Citrus Sinensis ID: 008621
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 559 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S702 | 559 | Aspartokinase 3, chloropl | yes | no | 0.962 | 0.962 | 0.754 | 0.0 | |
| O23653 | 544 | Aspartokinase 2, chloropl | no | no | 0.933 | 0.959 | 0.775 | 0.0 | |
| Q9LYU8 | 569 | Aspartokinase 1, chloropl | no | no | 0.878 | 0.862 | 0.797 | 0.0 | |
| Q57991 | 473 | Probable aspartokinase OS | yes | no | 0.796 | 0.940 | 0.363 | 2e-74 | |
| P08660 | 449 | Lysine-sensitive aspartok | N/A | no | 0.767 | 0.955 | 0.347 | 4e-51 | |
| P00561 | 820 | Bifunctional aspartokinas | N/A | no | 0.801 | 0.546 | 0.319 | 1e-50 | |
| O60163 | 519 | Probable aspartokinase OS | yes | no | 0.783 | 0.843 | 0.292 | 3e-50 | |
| P27725 | 819 | Bifunctional aspartokinas | N/A | no | 0.792 | 0.540 | 0.293 | 3e-46 | |
| O81852 | 916 | Bifunctional aspartokinas | no | no | 0.853 | 0.520 | 0.280 | 9e-45 | |
| P10869 | 527 | Aspartokinase OS=Saccharo | yes | no | 0.781 | 0.829 | 0.275 | 1e-44 |
| >sp|Q9S702|AK3_ARATH Aspartokinase 3, chloroplastic OS=Arabidopsis thaliana GN=AK3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/546 (75%), Positives = 470/546 (86%), Gaps = 8/546 (1%)
Query: 1 MANTMQFSSI----IQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSC 56
MA +MQF + + NS + S + F+ VSS+ +V SC LRV+C
Sbjct: 1 MAASMQFYGVKTPELALNSKRIE-FSSKGLNFSALVSSARVFSRNVDRSCKNIA-LRVTC 58
Query: 57 EGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIV 116
E R++++ERK SE ++++EK+LTCVMKFGGSS+ASAERM +VA+LILSFP+E+PV+V
Sbjct: 59 EAGRVELLERKASETFKLNKTEKKLTCVMKFGGSSVASAERMIQVAKLILSFPDEKPVVV 118
Query: 117 LSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEEL 176
LSAM KTTNKLL+AGEKAV CGVTN+ I+ELS++K+LH RT ELG++ ++IA HLE L
Sbjct: 119 LSAMAKTTNKLLMAGEKAVCCGVTNVDTIEELSYIKELHIRTAHELGVETAVIAEHLEGL 178
Query: 177 EQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236
EQLLKG+AM+KELT RSRDYLVSFGECMSTR+FAAYLNKIG KARQYDAF+IG ITTDDF
Sbjct: 179 EQLLKGVAMMKELTLRSRDYLVSFGECMSTRLFAAYLNKIGHKARQYDAFEIGIITTDDF 238
Query: 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGK 296
TNADILEATYPAV+K+L GDW + A+P+VTGFLGK WR+CA+TTLGRGGSDLTATTIGK
Sbjct: 239 TNADILEATYPAVSKKLLGDWSKENALPVVTGFLGKGWRSCAVTTLGRGGSDLTATTIGK 298
Query: 297 ALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREG 356
ALGL+EIQVWKDVDGVLTCDPNI+ A+PVP+LTFDEAAELAYFGAQVLHP SMRPAREG
Sbjct: 299 ALGLREIQVWKDVDGVLTCDPNIYCGAQPVPHLTFDEAAELAYFGAQVLHPLSMRPAREG 358
Query: 357 DIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVF 416
+IPVRVKNSYNP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGFLAKVF
Sbjct: 359 NIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDITSTRMLGQYGFLAKVF 418
Query: 417 STFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHR 476
STFE LGISVDVVATSEVS+SLTLDPSK SRELIQ ELD VVEELEKIA+VNLL+HR
Sbjct: 419 STFEKLGISVDVVATSEVSISLTLDPSKFCSRELIQH--ELDQVVEELEKIAVVNLLRHR 476
Query: 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 536
SIISLIGNVQRSS ILEK FRVLR +G+NVQMISQGASKVNISLIVNDDEAE CV+ALH
Sbjct: 477 SIISLIGNVQRSSFILEKGFRVLRTNGINVQMISQGASKVNISLIVNDDEAEHCVKALHS 536
Query: 537 TFFESD 542
FFE+D
Sbjct: 537 AFFETD 542
|
Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: 4 |
| >sp|O23653|AK2_ARATH Aspartokinase 2, chloroplastic OS=Arabidopsis thaliana GN=AK2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/530 (77%), Positives = 463/530 (87%), Gaps = 8/530 (1%)
Query: 20 ALSWQRFAFAK---CVS----SSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENL 72
ALS +R FA C S SSS + V +SC G LRVSCE R+D+++RK+ E
Sbjct: 15 ALSSKRLEFASKGACFSVTLPSSSAVFRDVEHSCRNIG-LRVSCEALRVDLLQRKEPETC 73
Query: 73 GVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGE 132
+ K+LTCVMKFGGSS+ SAERM+EVA LILSFP+ERPVIVLSAMGKTTNKLL AGE
Sbjct: 74 DSSGTGKELTCVMKFGGSSVESAERMKEVANLILSFPDERPVIVLSAMGKTTNKLLKAGE 133
Query: 133 KAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPR 192
KAV+CGVTN+ I+ELSF+K+LH RT ELG++ ++I HLE L QLLKGI+M+KELT R
Sbjct: 134 KAVTCGVTNVESIEELSFIKELHLRTAHELGVETTVIEKHLEGLHQLLKGISMMKELTLR 193
Query: 193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKR 252
+RDYLVSFGECMSTR+F+AYLNKIG KARQYDAF+IGFITTDDFTNADILEATYPAV+K
Sbjct: 194 TRDYLVSFGECMSTRLFSAYLNKIGHKARQYDAFEIGFITTDDFTNADILEATYPAVSKT 253
Query: 253 LHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
L GDW + A+P+VTG+LGK WR+CAITTLGRGGSDLTATTIGKALGL+EIQVWKDVDGV
Sbjct: 254 LVGDWSKENAVPVVTGYLGKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGV 313
Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPG 372
LTCDPNI+P A+ VPYLTFDEAAELAYFGAQVLHP SMRPAR+GDIPVRVKNSYNP APG
Sbjct: 314 LTCDPNIYPGAQSVPYLTFDEAAELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAPG 373
Query: 373 TLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432
T+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGFLAKVF+TFEDLGISVDVVATS
Sbjct: 374 TVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYGFLAKVFTTFEDLGISVDVVATS 433
Query: 433 EVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLIL 492
EVS+SLTLDP+KLW RELIQ+ +ELD++VEELEKIA+V LLQ RSIISLIGNVQ+SSLIL
Sbjct: 434 EVSISLTLDPAKLWGRELIQRVNELDNLVEELEKIAVVKLLQRRSIISLIGNVQKSSLIL 493
Query: 493 EKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542
EK F+V R +GVNVQMISQGASKVNISLIVND+EAEQCVRALH FFE+D
Sbjct: 494 EKVFQVFRSNGVNVQMISQGASKVNISLIVNDEEAEQCVRALHSAFFETD 543
|
Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q9LYU8|AK1_ARATH Aspartokinase 1, chloroplastic OS=Arabidopsis thaliana GN=AK1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/498 (79%), Positives = 443/498 (88%), Gaps = 7/498 (1%)
Query: 53 RVSCEGAR---IDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFP 109
+VS G+R V+E KK+E + + EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP
Sbjct: 56 KVSGSGSRNIVRAVLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFP 114
Query: 110 NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSII 169
E PVIVLSAMGKTTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I
Sbjct: 115 EESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVI 174
Query: 170 ATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229
T+LEELEQLLKGIAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IG
Sbjct: 175 LTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIG 234
Query: 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDL 289
FITTDDFTN DILEATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDL
Sbjct: 235 FITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDL 294
Query: 290 TATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349
TATTIGKALGL+EIQVWKDVDGVLTCDP I+ A PVPYLTFDEAAELAYFGAQVLHPQS
Sbjct: 295 TATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQS 354
Query: 350 MRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQY 409
MRPAREG+IPVRVKNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ
Sbjct: 355 MRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQV 414
Query: 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAI 469
GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ ELDHVVEELEKIA+
Sbjct: 415 GFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQ--ELDHVVEELEKIAV 472
Query: 470 VNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQ 529
VNLL+ R+IISLIGNVQ SSLILE+AF VL GVNVQMISQGASKVNIS IVN+ EAE
Sbjct: 473 VNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEG 532
Query: 530 CVRALHETFFES-DLANL 546
CV+ALH++FFES DL+ L
Sbjct: 533 CVQALHKSFFESGDLSEL 550
|
Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q57991|AK_METJA Probable aspartokinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0571 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 176/484 (36%), Positives = 287/484 (59%), Gaps = 39/484 (8%)
Query: 81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVL--SAMGKTTNKLLLAGEKAVSCG 138
+T VMKFGG+S+ S ER+R VA+++ E +V+ SAM + TN L+ ++A+
Sbjct: 1 MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALD-- 58
Query: 139 VTNISCI-DELSFVKDLHHRTVDELGID--------RSIIATHLEELEQLLKGIAMLKEL 189
V +I+ + D + F+++ H++ ++E I + II + +EELE++L G+A L EL
Sbjct: 59 VRDIAKVGDFIKFIREKHYKAIEE-AIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGEL 117
Query: 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI--LEATYP 247
TP+SRDY++SFGE +S+ I + + +G K+ + + G IT ++F +A + LE
Sbjct: 118 TPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE---- 173
Query: 248 AVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307
V +RL + + IP+VTGF+G ITTLGRGGSD +A IG L I++W
Sbjct: 174 -VKERLL-PLLKEGIIPVVTGFIG-TTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230
Query: 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN 367
DV GV T DP + P A+ +P L++ EA ELAYFGA+VLHP+++ PA E IP+ VKN++
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290
Query: 368 PNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD 427
P + GTLI +MS +++ +I +NV +++I M+G G A++F + ++V
Sbjct: 291 PESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVI 350
Query: 428 VVA--TSEVSLSLTLDPS------KLWSREL--IQQASELDHVVEELEKIAIVNLLQHRS 477
+++ +SE ++SL + K RE + S L++ + I V++ +
Sbjct: 351 LISQGSSETNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNL-----IRDVSVDKDVC 405
Query: 478 IISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 536
+IS++G R + I K F + SG N++MI+QG+S+VNIS ++++ + CVR LHE
Sbjct: 406 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHE 465
Query: 537 TFFE 540
F E
Sbjct: 466 KFIE 469
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
| >sp|P08660|AK3_ECOLI Lysine-sensitive aspartokinase 3 OS=Escherichia coli (strain K12) GN=lysC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 164/472 (34%), Positives = 253/472 (53%), Gaps = 43/472 (9%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS N R ++VLSA TN L+ A++ G+
Sbjct: 6 VSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLV-----ALAEGLEPGE 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE-----LTPRSRDYLV 198
++L ++++ ++ L I EE+E+LL+ I +L E +P D LV
Sbjct: 60 RFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDELV 115
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD-----ILEATYPAVAKRL 253
S GE MST +F L + V+A+ +D + T D F A+ + E + RL
Sbjct: 116 SHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPRL 174
Query: 254 HGDWITDLAIPIVTGFLG--KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
+ + I GF+G RT TTLGRGGSD TA + +AL + +W DV G
Sbjct: 175 NEGLV------ITQGFIGSENKGRT---TTLGRGGSDYTAALLAEALHASRVDIWTDVPG 225
Query: 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
+ T DP + AK + + F EAAE+A FGA+VLHP ++ PA DIPV V +S +P A
Sbjct: 226 IYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAG 285
Query: 372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431
GTL+ + + + ++ L+RN T+L + S ML GFLA+VF ISVD++ T
Sbjct: 286 GTLVCNKTE-NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT 344
Query: 432 SEVSLSLTL--DPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRS 488
SEVS++LTL S L+ Q+ ++ EL + V + + ++++LIGN + ++
Sbjct: 345 SEVSVALTLDTTGSTSTGDTLLTQS-----LLMELSALCRVEVEEGLALVALIGNDLSKA 399
Query: 489 SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540
+ ++ F VL N++MI GAS N+ +V ++AEQ V+ LH FE
Sbjct: 400 CGVGKEVFGVL--EPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449
|
Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
| >sp|P00561|AK1H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/472 (31%), Positives = 242/472 (51%), Gaps = 24/472 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSC--GVT 140
V+KFGG+S+A+AER VA+++ S + V VLSA K TN L+ EK +S +
Sbjct: 3 VLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALP 62
Query: 141 NISCIDELSFVKDLHHRTVDELGID----RSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
NIS + + F + L + G ++ + +++ +L GI++L +
Sbjct: 63 NISDAERI-FAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAA 121
Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--TNADILEATYPAVAKRLH 254
L+ GE MS I A L G D + + + + DI E+T A R+
Sbjct: 122 LICRGEKMSIAIMAGVLEARGHNVTVIDPVE-KLLAVGHYLESTVDIAESTRRIAASRIP 180
Query: 255 GDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
D + ++ GF + + LGR GSD +A + L ++W DVDGV T
Sbjct: 181 ADHMV-----LMAGFTAGNEKG-ELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYT 234
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTL 374
CDP P A+ + +++ EA EL+YFGA+VLHP+++ P + IP +KN+ NP APGTL
Sbjct: 235 CDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTL 294
Query: 375 IRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS 432
I SRD + + I N+ M + M G G A+VF+ ISV ++ ++S
Sbjct: 295 IGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSS 354
Query: 433 EVSLSLTLDPSK-LWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRS-SL 490
E S+S + S + + +Q+ L+ LE +A+ L +IIS++G+ R+
Sbjct: 355 EYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERL---AIISVVGDGMRTLRG 411
Query: 491 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542
I K F L R+ +N+ I+QG+S+ +IS++VN+D+A VR H+ F +D
Sbjct: 412 ISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTD 463
|
Escherichia coli (strain K12) (taxid: 83333) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|O60163|AK_SCHPO Probable aspartokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19F5.04 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 146/499 (29%), Positives = 249/499 (49%), Gaps = 61/499 (12%)
Query: 84 VMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGK------TTNKLLLAGEKAV 135
V KFGG+S+ + +VA+ LS +R +V SA TT +L+ A E A+
Sbjct: 17 VQKFGGTSVGKFPIKIAVDVAKEYLS--TKRVALVCSARSTDTKAEGTTTRLIRATEAAL 74
Query: 136 SCGVTNISCI------DELSFVKDLHHRTVDELGI-DRSIIATHLE--ELEQLLKGIAML 186
V ++ + D + +D + ++GI D I A H + ELEQ L I +L
Sbjct: 75 RPAVGSVHDLVRIIETDHVQAARDF----IQDVGIQDELIDAFHADCVELEQYLNAIRVL 130
Query: 187 KELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATY 246
E++PR+RD ++ GE +S R AA L G+ + D I D+ L+A++
Sbjct: 131 SEVSPRTRDLVIGMGERLSCRFMAAVLKDQGIDSEFIDMSHI----IDEQREWRNLDASF 186
Query: 247 PAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304
A +T + +P+VTGF G ++ +GRG +D A + L E+Q
Sbjct: 187 YAYLASQLASKVTAVGNKVPVVTGFFGMV-PGGLLSQIGRGYTDFCAALLAVGLNADELQ 245
Query: 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKN 364
+WK+VDG+ T DP P A+ +P +T +EAAEL Y+G++V+HP +M IP+R+KN
Sbjct: 246 IWKEVDGIFTADPRKVPTARLLPLITPEEAAELTYYGSEVIHPFTMSQVVHARIPIRIKN 305
Query: 365 SYNPNAPGTLIRR----------------------SRDMSKAVLTSIVLKRNVTMLDIVS 402
NP GT+I S ++ T++ +K + +++I S
Sbjct: 306 VGNPRGKGTVIFPDTISRHGSATPPHPPKIMPDDISASLANKGATAVTIKDTIMVINIQS 365
Query: 403 TRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVE 462
R + +GFLA +F+ + ++VD++ TSEV +S+ L +
Sbjct: 366 NRKISAHGFLASIFAILDKYKLAVDLITTSEVHVSMALYEE--------SDDGNMHEAFV 417
Query: 463 ELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLI 521
EL ++ +++L +I+SL+G R++ + F L + +N++MISQGAS++NIS +
Sbjct: 418 ELRRLGTLDILHGLAILSLVGKHMRNTTGYAGRMFCKLAEAQINIEMISQGASEINISCV 477
Query: 522 VNDDEAEQCVRALHETFFE 540
+++ A + + +H+ E
Sbjct: 478 IDEKMAVKALNVIHKELLE 496
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
| >sp|P27725|AK1H_SERMA Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 242/477 (50%), Gaps = 34/477 (7%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCG--VT 140
V+KFGG+S+A+AER VA+++ S + V VLSA K TN L+ +K V+ +
Sbjct: 3 VLKFGGTSVANAERFLRVADIMESNARQGQVATVLSAPAKITNHLVAMIDKTVAGQDILP 62
Query: 141 NISCIDEL------SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSR 194
N+S + + + L D L + ++ +L+Q+L G+++L +
Sbjct: 63 NMSDAERIFADLLSGLAQALPGFEYDRL---KGVVDQEFAQLKQVLHGVSLLGQCPDSVN 119
Query: 195 DYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--TNADILEATYPAVAKR 252
++ GE +S I G + + + + + DI E+T A
Sbjct: 120 AAIICRGEKLSIAIMEGVFRAKGYPVTVINPVE-KLLAQGHYLESTVDIAESTLRIAAAA 178
Query: 253 LHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
+ D I ++ GF + + LGR GSD +A + L ++W DVDGV
Sbjct: 179 IPADHIV-----LMAGFTAGNDKG-ELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGV 232
Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPG 372
TCDP P A+ + +++ EA EL+YFGA+VLHP+++ P + IP +KN+ NP APG
Sbjct: 233 YTCDPRTVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTSNPQAPG 292
Query: 373 TLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--A 430
TLI + + + I N+ M+++ M G G A+VF+ GISV ++ +
Sbjct: 293 TLIGKDSTDADMPVKGITNLNNMAMINVSGPGMKGMVGMAARVFAVMSRAGISVVLITQS 352
Query: 431 TSEVSLSLTLDPSKLW-SRELIQQASEL---DHVVEELEKIAIVNLLQHRSIISLIGNVQ 486
+SE S+S + +L +R +++ L D V++ L+ +++ +IIS++G+
Sbjct: 353 SSEYSISFCVPQGELQRARRALEEEFYLELKDGVLDPLD------VMERLAIISVVGDGM 406
Query: 487 RS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542
R+ I + F L R+ +N+ I+QG+S+ +IS++V++D A VR H+ F +D
Sbjct: 407 RTLRGISARFFSALARANINIVAIAQGSSERSISVVVSNDSATTGVRVSHQMLFNTD 463
|
Serratia marcescens (taxid: 615) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 150/534 (28%), Positives = 273/534 (51%), Gaps = 57/534 (10%)
Query: 43 RNSCGGRGGLRVSCE------GARIDVIERKKSENLGVDE---SEKQLTCVMKFGGSSLA 93
R + GG GGL + CE A + + NL VD+ + ++ V KFGG+ +
Sbjct: 43 RKTTGGGGGL-IRCELPDFHLSATATTVSGVSTVNL-VDQVQIPKGEMWSVHKFGGTCVG 100
Query: 94 SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153
+++R+R VAE+I++ +ER ++V+SAM K T+ + KA S + S + L V +
Sbjct: 101 NSQRIRNVAEVIINDNSERKLVVVSAMSKVTDMMYDLIRKAQS---RDDSYLSALEAVLE 157
Query: 154 LHHRTVDEL--GIDRSIIATHLEE----LEQLLKGIAMLKELTPRSRDYLVSFGECMSTR 207
H T +L G D + +HL L+ +L+ I + + D++ GE S +
Sbjct: 158 KHRLTARDLLDGDDLASFLSHLHNDISNLKAMLRAIYIAGHASESFSDFVAGHGELWSAQ 217
Query: 208 IFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW--ITDLAIPI 265
+ + + K G++ + D D+ + T+++ ++ + KRL W + I I
Sbjct: 218 MLSYVVRKTGLECKWMDTRDVLIVNP---TSSNQVDPDFGESEKRLD-KWFSLNPSKIII 273
Query: 266 VTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKP 325
TGF+ + TTL R GSD +A +G L +++ +W DVDGV + DP A
Sbjct: 274 ATGFIASTPQNIP-TTLKRDGSDFSAAIMGALLRARQVTIWTDVDGVYSADPRKVNEAVI 332
Query: 326 VPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI-RRSRDMSKA 384
+ L++ EA E++YFGA VLHP+++ P +IP+ ++N +N +APGT+I + D
Sbjct: 333 LQTLSYQEAWEMSYFGANVLHPRTIIPVMRYNIPIVIRNIFNLSAPGTIICQPPEDDYDL 392
Query: 385 VLTSIVLK----RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEVSLSL 438
LT+ V N+ ++++ T M G G + +F +D+G +V ++ A+SE S+
Sbjct: 393 KLTTPVKGFATIDNLALINVEGTGMAGVPGTASDIFGCVKDVGANVIMISQASSEHSVCF 452
Query: 439 TLDPSKLWSRELIQQASELDHVVEELE----------KIAIVNLLQHRSIISLIGNVQRS 488
+ P K E++ V E L +++ + ++ + SI++ +G S
Sbjct: 453 AV-PEK-----------EVNAVSEALRSRFSEALQAGRLSQIEVIPNCSILAAVGQKMAS 500
Query: 489 SLILE-KAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541
+ + F L ++ +NV+ ISQG S+ N+++++ +++ + +RA+H FF S
Sbjct: 501 TPGVSCTLFSALAKANINVRAISQGCSEYNVTVVIKREDSVKALRAVHSRFFLS 554
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|P10869|AK_YEAST Aspartokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOM3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/497 (27%), Positives = 245/497 (49%), Gaps = 60/497 (12%)
Query: 84 VMKFGGSSLASAERMREVAELILSF-----PNERPVIVLSAMGK------TTNKLLLAGE 132
V KFGG+S+ ++ V +++ + PN +V SA TT++LL
Sbjct: 16 VQKFGGTSVGKFP-VQIVDDIVKHYSKPDGPNNNVAVVCSARSSYTKAEGTTSRLL---- 70
Query: 133 KAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIAT-------HLEELEQLLKGIAM 185
K D + ++ H D ++ ++ A LE +++ L +
Sbjct: 71 KCCDLASQESEFQDIIEVIRQDHIDNADRFILNPALQAKLVDDTNKELELVKKYLNASKV 130
Query: 186 LKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEAT 245
L E++ R+ D ++S GE +S A N G KA+ D+ I DF+ + + +
Sbjct: 131 LGEVSSRTVDLVMSCGEKLSCLFMTALCNDRGCKAKY---VDLSHIVPSDFSASALDNSF 187
Query: 246 YPAVAKRLHGDWITDLA-----IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGL 300
Y + + L ++ +P+ TGF G T + +GRG +DL A I A+
Sbjct: 188 YTFLVQALKEKLAPFVSAKERIVPVFTGFFGLV-PTGLLNGVGRGYTDLCAALIAVAVNA 246
Query: 301 QEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 360
E+QVWK+VDG+ T DP P A+ + +T +EA+EL Y+G++V+HP +M IP+
Sbjct: 247 DELQVWKEVDGIFTADPRKVPEARLLDSVTPEEASELTYYGSEVIHPFTMEQVIRAKIPI 306
Query: 361 RVKNSYNPNAPGTLI--------------RRSRDMSKAVL-------TSIVLKRNVTMLD 399
R+KN NP GT+I ++S + T+I K ++ +++
Sbjct: 307 RIKNVQNPLGNGTIIYPDNVAKKGESTPPHPPENLSSSFYEKRKRGATAITTKNDIFVIN 366
Query: 400 IVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDH 459
I S + +GFLA++F+ + + VD+++TSEV +S+ L S + ++QA
Sbjct: 367 IHSNKKTLSHGFLAQIFTILDKYKLVVDLISTSEVHVSMALPIPDADSLKSLRQAE---- 422
Query: 460 VVEELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNI 518
E+L + V++ + SI+SL+G + + I F L G+N++MISQGA+++NI
Sbjct: 423 --EKLRILGSVDITKKLSIVSLVGKHMKQYIGIAGTMFTTLAEEGINIEMISQGANEINI 480
Query: 519 SLIVNDDEAEQCVRALH 535
S ++N+ ++ + ++ +H
Sbjct: 481 SCVINESDSIKALQCIH 497
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 559 | ||||||
| 225451597 | 567 | PREDICTED: aspartokinase 3, chloroplasti | 0.974 | 0.961 | 0.810 | 0.0 | |
| 255543571 | 556 | aspartate kinase, putative [Ricinus comm | 0.949 | 0.955 | 0.830 | 0.0 | |
| 224065286 | 486 | predicted protein [Populus trichocarpa] | 0.869 | 1.0 | 0.875 | 0.0 | |
| 224131436 | 487 | predicted protein [Populus trichocarpa] | 0.871 | 1.0 | 0.869 | 0.0 | |
| 356559490 | 567 | PREDICTED: aspartokinase 1, chloroplasti | 0.908 | 0.895 | 0.829 | 0.0 | |
| 296082278 | 479 | unnamed protein product [Vitis vinifera] | 0.844 | 0.985 | 0.875 | 0.0 | |
| 351726461 | 564 | precursor monofunctional aspartokinase [ | 0.908 | 0.900 | 0.821 | 0.0 | |
| 359473780 | 575 | PREDICTED: aspartokinase 1, chloroplasti | 0.996 | 0.968 | 0.765 | 0.0 | |
| 449452022 | 474 | PREDICTED: aspartokinase 2, chloroplasti | 0.844 | 0.995 | 0.875 | 0.0 | |
| 297807431 | 545 | lysine-sensitive aspartate kinase [Arabi | 0.919 | 0.943 | 0.788 | 0.0 |
| >gi|225451597|ref|XP_002275779.1| PREDICTED: aspartokinase 3, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/549 (81%), Positives = 488/549 (88%), Gaps = 4/549 (0%)
Query: 9 SIIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKK 68
++ + SLHCQ L QR F V+ SRLC SV++S + LRV C G IDV+E+ K
Sbjct: 16 AVSSRRSLHCQPLWSQRVDFTLSVAGGSRLCRSVKDS-SRKNVLRVCCSGGSIDVLEKSK 74
Query: 69 SENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLL 128
+EN D +QLT MKFGGSS+ASAERMREVA+LILSFPNERPVIVLSAMGKTTNKLL
Sbjct: 75 TENQTTDGVTEQLTIAMKFGGSSVASAERMREVADLILSFPNERPVIVLSAMGKTTNKLL 134
Query: 129 LAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE 188
LAGEKAVSCGV+N SCIDEL+F+K+LH RT DELG+D S+I+ HLEELEQLLKGIAM+KE
Sbjct: 135 LAGEKAVSCGVSNASCIDELTFIKELHLRTADELGVDSSVISAHLEELEQLLKGIAMMKE 194
Query: 189 LTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPA 248
LT R++DYLVSFGECMSTR+FAAY+NKIG KARQYDAFDIGFITTDDFTNADILEATYPA
Sbjct: 195 LTLRTKDYLVSFGECMSTRLFAAYMNKIGAKARQYDAFDIGFITTDDFTNADILEATYPA 254
Query: 249 VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308
VAKRL GDWI+D AIPIVTGFLGK WR+CA+TTLGRGGSDLTATT+GKALGL+EIQVWKD
Sbjct: 255 VAKRLLGDWISDPAIPIVTGFLGKGWRSCAVTTLGRGGSDLTATTLGKALGLREIQVWKD 314
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
VDGVLTCDPNI+ HAKPV YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN
Sbjct: 315 VDGVLTCDPNIYSHAKPVEYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNR 374
Query: 369 NAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV 428
NAPGTLI R+RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQ+GFLAKVFS FE+LGISVDV
Sbjct: 375 NAPGTLITRTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEELGISVDV 434
Query: 429 VATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRS 488
VATSEVS+SLTLDPSKLWSRELIQQ ELDHVVEELEKIA+VNLLQHRSIISLIGN+Q S
Sbjct: 435 VATSEVSISLTLDPSKLWSRELIQQ--ELDHVVEELEKIAVVNLLQHRSIISLIGNIQMS 492
Query: 489 SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLANLDC 548
SLILEKAF VLR GVNVQMISQGASKVNISLIVNDD+AE+CVRALH FFES L+ +D
Sbjct: 493 SLILEKAFHVLRTKGVNVQMISQGASKVNISLIVNDDQAEKCVRALHSAFFES-LSEVDR 551
Query: 549 VCGSENNSS 557
C S+N S+
Sbjct: 552 ECQSDNGST 560
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543571|ref|XP_002512848.1| aspartate kinase, putative [Ricinus communis] gi|223547859|gb|EEF49351.1| aspartate kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/542 (83%), Positives = 483/542 (89%), Gaps = 11/542 (2%)
Query: 10 IIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVR-NSCGGRGGLRVSCEGARIDVIERKK 68
+ K +L CQA FA + V SS L SV+ +SC R LRVSCEG IDV+ER K
Sbjct: 17 VFPKKALQCQAFG---FANSVAVPSSKGLFKSVKFSSCTSRV-LRVSCEGRNIDVLERNK 72
Query: 69 SENL--GVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK 126
SE+ G ESEKQ TCVMKFGGSSLASAERMREVA+LILSF +E P+IVLSAMGKTTNK
Sbjct: 73 SESSIDGNVESEKQFTCVMKFGGSSLASAERMREVADLILSFADETPIIVLSAMGKTTNK 132
Query: 127 LLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAML 186
LLLAGEKAV CGVTN++ IDELSF+K+LH RTV+EL +D+S++ATHLEELEQLL GIAM+
Sbjct: 133 LLLAGEKAVCCGVTNVNAIDELSFIKELHLRTVEELKVDKSVVATHLEELEQLLNGIAMM 192
Query: 187 KELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATY 246
KELTPR+RDYLVSFGECMSTRIFAAYLNKIG KARQYDAFD+G ITTDDFTNADILEATY
Sbjct: 193 KELTPRTRDYLVSFGECMSTRIFAAYLNKIGAKARQYDAFDMGIITTDDFTNADILEATY 252
Query: 247 PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVW 306
PAVAKRLHGDWI+D AIPIVTGFLGK WR+CAITTLGRGGSDLTATTIGKALGL+EIQVW
Sbjct: 253 PAVAKRLHGDWISDPAIPIVTGFLGKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVW 312
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
KDVDGVLTCDPNI+ A+PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY
Sbjct: 313 KDVDGVLTCDPNIYQRAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 372
Query: 367 NPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISV 426
NPNAPGTLI R+RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQ+GFLAKVFS FEDLGISV
Sbjct: 373 NPNAPGTLITRARDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISV 432
Query: 427 DVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQ 486
DVVATSEVS+SLTLDPSKLWSRELIQQASELDHV+EELEKIA+VNLLQHRSIISLIGNVQ
Sbjct: 433 DVVATSEVSISLTLDPSKLWSRELIQQASELDHVLEELEKIAVVNLLQHRSIISLIGNVQ 492
Query: 487 RSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLANL 546
RSSLILEK F VLR +GVNVQMISQGASKVNISLIVNDDEAEQCVR FF S A L
Sbjct: 493 RSSLILEKVFNVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVR----EFFPSHPARL 548
Query: 547 DC 548
C
Sbjct: 549 AC 550
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065286|ref|XP_002301756.1| predicted protein [Populus trichocarpa] gi|222843482|gb|EEE81029.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/490 (87%), Positives = 461/490 (94%), Gaps = 4/490 (0%)
Query: 53 RVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNER 112
+VSCE A +D++E K +N E+EK++TCVMKFGGSS+ASAERMREVAELILSFPNE
Sbjct: 1 KVSCEAASVDLLETNKIDN----EAEKKITCVMKFGGSSVASAERMREVAELILSFPNES 56
Query: 113 PVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATH 172
PVIVLSAMGKTTNKLLLAGEKAVSCGVTN+ I+ELSF+K+LH+RTV EL +D S+IA H
Sbjct: 57 PVIVLSAMGKTTNKLLLAGEKAVSCGVTNVDSIEELSFIKELHNRTVKELEVDESVIAKH 116
Query: 173 LEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232
LEELEQLLKGIAM+KELTPR+RDYLVSFGECMSTRIFAAY+NKIG KARQYDAF+IGFIT
Sbjct: 117 LEELEQLLKGIAMMKELTPRTRDYLVSFGECMSTRIFAAYMNKIGAKARQYDAFEIGFIT 176
Query: 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTAT 292
TDDFTNADILEATYPAVAK LHGDWI+D AIPIVTGFLGK WR+CAITTLGRGGSDLTAT
Sbjct: 177 TDDFTNADILEATYPAVAKSLHGDWISDPAIPIVTGFLGKGWRSCAITTLGRGGSDLTAT 236
Query: 293 TIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRP 352
TIGKALGL EIQVWKDVDGVLTCDPNI+PHA+PVPYLTFDEAAELAYFGAQVLHPQSMRP
Sbjct: 237 TIGKALGLSEIQVWKDVDGVLTCDPNIYPHAEPVPYLTFDEAAELAYFGAQVLHPQSMRP 296
Query: 353 AREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFL 412
ARE DIPVRVKNSYNPNAPGTLI R+RDMSKAVLTSIVLKRNVTMLDI STRMLGQ+GFL
Sbjct: 297 AREADIPVRVKNSYNPNAPGTLITRARDMSKAVLTSIVLKRNVTMLDIASTRMLGQFGFL 356
Query: 413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNL 472
AKVFSTFEDLGISVDVVATSEVS+SLTLDPSKLWSRELIQQASELDHVVEELEKIA+VNL
Sbjct: 357 AKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAVVNL 416
Query: 473 LQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVR 532
LQ RSIISLIGNVQRSSLILEKAF VLR GVNVQMISQGASKVNISLIVNDDEAEQCV+
Sbjct: 417 LQRRSIISLIGNVQRSSLILEKAFHVLRTLGVNVQMISQGASKVNISLIVNDDEAEQCVK 476
Query: 533 ALHETFFESD 542
+LH+ FFE+D
Sbjct: 477 SLHKAFFETD 486
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131436|ref|XP_002321084.1| predicted protein [Populus trichocarpa] gi|222861857|gb|EEE99399.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/491 (86%), Positives = 456/491 (92%), Gaps = 4/491 (0%)
Query: 52 LRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNE 111
L+VSCE A +DV+E K++N ++E QLTCVMKFGGSSLASAERMREVAELILSF NE
Sbjct: 1 LKVSCEAASVDVLEMNKTDN----QAETQLTCVMKFGGSSLASAERMREVAELILSFRNE 56
Query: 112 RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIAT 171
RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN+ I+ELS +K+LH T ELG+D S+IA
Sbjct: 57 RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNVESIEELSIIKELHLLTAKELGVDESVIAK 116
Query: 172 HLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231
HLEELEQLLKGIAM+KELTPR++DYLVSFGECMSTRIFAAY+NKIG KARQYDAF IGFI
Sbjct: 117 HLEELEQLLKGIAMMKELTPRTKDYLVSFGECMSTRIFAAYMNKIGAKARQYDAFKIGFI 176
Query: 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTA 291
TTDDFTNADILEATYPAVA+ LHGDWI D AIPIVTGFLGK WR+CAITTLGRGGSDLTA
Sbjct: 177 TTDDFTNADILEATYPAVAQSLHGDWIRDTAIPIVTGFLGKGWRSCAITTLGRGGSDLTA 236
Query: 292 TTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMR 351
TTIGKALGL+EIQVWKDVDGVLTCDPNI+PHA+PVPYLTFDEAAELAYFGAQVLHPQSMR
Sbjct: 237 TTIGKALGLREIQVWKDVDGVLTCDPNIYPHAEPVPYLTFDEAAELAYFGAQVLHPQSMR 296
Query: 352 PAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGF 411
PAREGDIPVRVKNSYN NAPGTLI R+RDMSKAVLTSIV+KRNVTMLDIVSTRMLGQ+GF
Sbjct: 297 PAREGDIPVRVKNSYNSNAPGTLITRTRDMSKAVLTSIVMKRNVTMLDIVSTRMLGQFGF 356
Query: 412 LAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVN 471
LAKVFS FEDLGISVDVVATSEVS+SLTLDPSKLWSRELIQQASELDHVVEELEKIA+VN
Sbjct: 357 LAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAVVN 416
Query: 472 LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCV 531
LLQHRSIISLIGNVQRSSLILEK F VL G+NVQMISQGASKVNISLIVNDDEAEQCV
Sbjct: 417 LLQHRSIISLIGNVQRSSLILEKVFNVLHIKGINVQMISQGASKVNISLIVNDDEAEQCV 476
Query: 532 RALHETFFESD 542
R+LH FFESD
Sbjct: 477 RSLHSAFFESD 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559490|ref|XP_003548032.1| PREDICTED: aspartokinase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/511 (82%), Positives = 461/511 (90%), Gaps = 3/511 (0%)
Query: 40 VSVRNSCGGRGGLRVS-CEGARI-DVIERKKSENLGVD-ESEKQLTCVMKFGGSSLASAE 96
V R G R V+ C+ + DVIE+ +EN V E E TCVMKFGGSS+ASAE
Sbjct: 39 VCARRVWGNRVAFNVTTCKASTTSDVIEKSVTENRVVSIEGETSFTCVMKFGGSSVASAE 98
Query: 97 RMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156
RM+EVA LILSFP ERP++VLSAMGKTTNKLLLAGEKAVSCGVTN+S I+EL F+KDLH
Sbjct: 99 RMKEVATLILSFPEERPIVVLSAMGKTTNKLLLAGEKAVSCGVTNVSSIEELCFIKDLHL 158
Query: 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKI 216
RTVD+LG+D S+IA HLEELEQLLKGIAM+KELT R++DYLVSFGECMSTRIFAAYLNKI
Sbjct: 159 RTVDQLGVDGSVIAKHLEELEQLLKGIAMMKELTKRTQDYLVSFGECMSTRIFAAYLNKI 218
Query: 217 GVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT 276
GVKARQYDAF+IGFITTDDFTNADILEATYPAVAKRLHGDW++D AI IVTGFLGKA ++
Sbjct: 219 GVKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLHGDWLSDPAIAIVTGFLGKAQKS 278
Query: 277 CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAE 336
CA+TTLGRGGSDLTAT IGKALGL EIQVWKDVDGVLTCDPNI+P A+PVPYLTFDEAAE
Sbjct: 279 CAVTTLGRGGSDLTATAIGKALGLPEIQVWKDVDGVLTCDPNIYPKAEPVPYLTFDEAAE 338
Query: 337 LAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVT 396
LAYFGAQVLHPQSMRPARE DIPVRVKNSYNP APGTLI ++RDMSKAVLTSIVLKRNVT
Sbjct: 339 LAYFGAQVLHPQSMRPARESDIPVRVKNSYNPKAPGTLITKARDMSKAVLTSIVLKRNVT 398
Query: 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASE 456
MLDIVSTRMLGQYGFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQASE
Sbjct: 399 MLDIVSTRMLGQYGFLAKVFSIFEELGISVDVVATSEVSVSLTLDPSKLWSRELIQQASE 458
Query: 457 LDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKV 516
LDHVVEELEKIA+VNLLQ+RSIISLIGNVQRSSLILEKAFRVLR G+ VQMISQGASKV
Sbjct: 459 LDHVVEELEKIAVVNLLQNRSIISLIGNVQRSSLILEKAFRVLRTLGITVQMISQGASKV 518
Query: 517 NISLIVNDDEAEQCVRALHETFFESDLANLD 547
NISL+VND EAEQCVRALH FFES+L+ L+
Sbjct: 519 NISLVVNDSEAEQCVRALHLAFFESELSELE 549
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082278|emb|CBI21283.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/473 (87%), Positives = 446/473 (94%), Gaps = 1/473 (0%)
Query: 85 MKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISC 144
MKFGGSS+ASAERMREVA+LILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGV+N SC
Sbjct: 1 MKFGGSSVASAERMREVADLILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVSNASC 60
Query: 145 IDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECM 204
IDEL+F+K+LH RT DELG+D S+I+ HLEELEQLLKGIAM+KELT R++DYLVSFGECM
Sbjct: 61 IDELTFIKELHLRTADELGVDSSVISAHLEELEQLLKGIAMMKELTLRTKDYLVSFGECM 120
Query: 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIP 264
STR+FAAY+NKIG KARQYDAFDIGFITTDDFTNADILEATYPAVAKRL GDWI+D AIP
Sbjct: 121 STRLFAAYMNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLLGDWISDPAIP 180
Query: 265 IVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAK 324
IVTGFLGK WR+CA+TTLGRGGSDLTATT+GKALGL+EIQVWKDVDGVLTCDPNI+ HAK
Sbjct: 181 IVTGFLGKGWRSCAVTTLGRGGSDLTATTLGKALGLREIQVWKDVDGVLTCDPNIYSHAK 240
Query: 325 PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA 384
PV YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN NAPGTLI R+RDMSKA
Sbjct: 241 PVEYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNRNAPGTLITRTRDMSKA 300
Query: 385 VLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444
VLTSIVLKRNVTMLDIVSTRMLGQ+GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSK
Sbjct: 301 VLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSK 360
Query: 445 LWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGV 504
LWSRELIQQASELDHVVEELEKIA+VNLLQHRSIISLIGN+Q SSLILEKAF VLR GV
Sbjct: 361 LWSRELIQQASELDHVVEELEKIAVVNLLQHRSIISLIGNIQMSSLILEKAFHVLRTKGV 420
Query: 505 NVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLANLDCVCGSENNSS 557
NVQMISQGASKVNISLIVNDD+AE+CVRALH FFES L+ +D C S+N S+
Sbjct: 421 NVQMISQGASKVNISLIVNDDQAEKCVRALHSAFFES-LSEVDRECQSDNGST 472
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351726461|ref|NP_001238151.1| precursor monofunctional aspartokinase [Glycine max] gi|5305740|gb|AAD41796.1| precursor monofunctional aspartokinase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/510 (82%), Positives = 458/510 (89%), Gaps = 2/510 (0%)
Query: 40 VSVRNSCGGRGGLRVS-CEGARIDVIERKKSENLGVD-ESEKQLTCVMKFGGSSLASAER 97
V R G R V+ C+ + DVIE+ +EN V E E TCVMKFGGSS+ASA+R
Sbjct: 41 VCARRVWGNRVAFSVTTCKASTSDVIEKNATENGMVSSEGETSFTCVMKFGGSSVASADR 100
Query: 98 MREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157
M+EVA LILSFP ERP++VLSAMGKTTNKLLLAGEKAVSCGV N+S I+EL F+KDLH R
Sbjct: 101 MKEVATLILSFPEERPIVVLSAMGKTTNKLLLAGEKAVSCGVINVSSIEELCFIKDLHLR 160
Query: 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIG 217
TVD+LG+D S+I+ HLEELEQLLKGIAM+KELT R++DYLVSFGECMSTRIFAAYLNKIG
Sbjct: 161 TVDQLGVDGSVISKHLEELEQLLKGIAMMKELTKRTQDYLVSFGECMSTRIFAAYLNKIG 220
Query: 218 VKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC 277
VKARQYDAF+IGFITTDDFTNADILEATYPAVAKRLHGDW++D AI IVTGFLGKA ++C
Sbjct: 221 VKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLHGDWLSDPAIAIVTGFLGKARKSC 280
Query: 278 AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAEL 337
A+TTLGRGGSDLTATTIGKALGL EIQVWKDVDGVLTCDPNI+P A+PVPYLTFDEAAEL
Sbjct: 281 AVTTLGRGGSDLTATTIGKALGLPEIQVWKDVDGVLTCDPNIYPKAEPVPYLTFDEAAEL 340
Query: 338 AYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397
AYFGAQVLHPQSMRPARE DIPVRVKNSYNP APGTLI ++RDMSKAVLTSIVLKRNVTM
Sbjct: 341 AYFGAQVLHPQSMRPARESDIPVRVKNSYNPKAPGTLITKARDMSKAVLTSIVLKRNVTM 400
Query: 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASEL 457
LDI STRMLGQYGFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQASEL
Sbjct: 401 LDIASTRMLGQYGFLAKVFSIFEELGISVDVVATSEVSVSLTLDPSKLWSRELIQQASEL 460
Query: 458 DHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVN 517
DHVVEELEKIA+VNLLQ+RSIISLIGNVQRSSLILE+ RVLR GV VQMISQGASKVN
Sbjct: 461 DHVVEELEKIAVVNLLQNRSIISLIGNVQRSSLILERLSRVLRTLGVTVQMISQGASKVN 520
Query: 518 ISLIVNDDEAEQCVRALHETFFESDLANLD 547
ISL+VND EAEQCVRALH FFES+L+ L+
Sbjct: 521 ISLVVNDSEAEQCVRALHSAFFESELSELE 550
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473780|ref|XP_002267220.2| PREDICTED: aspartokinase 1, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/568 (76%), Positives = 478/568 (84%), Gaps = 11/568 (1%)
Query: 1 MANTMQFSSI-----IQK---NSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGL 52
MA ++ FS + I+K + + S R F+ SSS L + + C R L
Sbjct: 1 MAGSVHFSGVRTPLLIKKACFSRFPSLSKSSNRIEFSASAISSSGLFAAFGDGCRRRV-L 59
Query: 53 RVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNER 112
RV C+ V+ + SEN D++ ++L CVMKFGGSSLASAERMREVA+L+L F +ER
Sbjct: 60 RVGCKKGVEAVLREEASENESSDDNVEKLACVMKFGGSSLASAERMREVADLVLQFRDER 119
Query: 113 PVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATH 172
PVIVLSAMGKTTN LLLAGEKAVSCGV+N S IDELS VK+LH RTV ELG+D S+I+ H
Sbjct: 120 PVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIDELSLVKELHLRTVQELGLDSSVISGH 179
Query: 173 LEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232
LEELEQLLKGIAM+KELT R+ DYLVSFGECMSTRIFAAYLNKIG KARQYDAFDIGFIT
Sbjct: 180 LEELEQLLKGIAMMKELTFRTTDYLVSFGECMSTRIFAAYLNKIGAKARQYDAFDIGFIT 239
Query: 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTAT 292
TDDFTNADILEATYPAVAKRL+ DWI D AIPIVTGFLGK W++ A+TTLGRGGSDLTAT
Sbjct: 240 TDDFTNADILEATYPAVAKRLYNDWINDPAIPIVTGFLGKGWKSGAVTTLGRGGSDLTAT 299
Query: 293 TIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRP 352
IG+ALGLQEIQVWKDVDGVLTCDP+I+P A PVPYLTFDEAAELAYFGAQVLHPQ+MRP
Sbjct: 300 AIGRALGLQEIQVWKDVDGVLTCDPSIYPRALPVPYLTFDEAAELAYFGAQVLHPQAMRP 359
Query: 353 AREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFL 412
ARE DIPVRVKNSYNP APGTLI ++RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQ+GFL
Sbjct: 360 ARESDIPVRVKNSYNPEAPGTLINKTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFL 419
Query: 413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNL 472
AKVFS FEDLGISVDVVATSEVS+SLTLDPSKLWSRELIQQASELDHVVEELEKIA+VNL
Sbjct: 420 AKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAVVNL 479
Query: 473 LQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVR 532
LQHRSIISLIGN+QRSSLILEKAF VLR GVNVQMISQGASKVNISLIVND EAEQCV+
Sbjct: 480 LQHRSIISLIGNIQRSSLILEKAFNVLRTIGVNVQMISQGASKVNISLIVNDSEAEQCVK 539
Query: 533 ALHETFFE-SDLANLDCVCGS-ENNSSL 558
ALH FFE DL L + G EN S+L
Sbjct: 540 ALHHAFFEIGDLFELMILDGGVENGSAL 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452022|ref|XP_004143759.1| PREDICTED: aspartokinase 2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/473 (87%), Positives = 439/473 (92%), Gaps = 1/473 (0%)
Query: 85 MKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISC 144
MKFGGSS+ASAERM EVAELI SFP ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN S
Sbjct: 1 MKFGGSSVASAERMMEVAELIRSFPEERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNASD 60
Query: 145 IDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECM 204
IDE+ F+K+LH +T DELG+DRSIIA HL+ELEQLLKGIAM+KELT R+RDYLVSFGECM
Sbjct: 61 IDEMKFIKELHLKTADELGVDRSIIANHLDELEQLLKGIAMMKELTLRTRDYLVSFGECM 120
Query: 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIP 264
STRIFAAYL +IGVKARQYDAF+IGFITTDDFTNADILEATYPAVAKRL GDW +D AIP
Sbjct: 121 STRIFAAYLIRIGVKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLLGDWNSDPAIP 180
Query: 265 IVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAK 324
IVTGFLGK WR+CA+TTLGRGGSDLTATTIGKALGL+EIQVWKDVDGVLTCDPNIH A+
Sbjct: 181 IVTGFLGKGWRSCAVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIHSGAE 240
Query: 325 PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA 384
PVP+LTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP APGTLI R+RDMSKA
Sbjct: 241 PVPFLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPQAPGTLITRNRDMSKA 300
Query: 385 VLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444
VLTSIVLKRNVTMLDIVSTRMLGQYGFLA+VF+ FEDLGISVDVVATSEVSLSLTLDPSK
Sbjct: 301 VLTSIVLKRNVTMLDIVSTRMLGQYGFLARVFAIFEDLGISVDVVATSEVSLSLTLDPSK 360
Query: 445 LWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGV 504
LWSRELIQQASELDHVVEELEKIA+V LLQHRSIISLIGNVQRSSLILEKAF VLR +GV
Sbjct: 361 LWSRELIQQASELDHVVEELEKIAVVKLLQHRSIISLIGNVQRSSLILEKAFHVLRTNGV 420
Query: 505 NVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLANLDCV-CGSENNS 556
NVQMISQGASKVNISLIVND+EAEQCVRALH FFE D L+ C S+N S
Sbjct: 421 NVQMISQGASKVNISLIVNDNEAEQCVRALHSAFFEIDGMKLNTEGCTSQNGS 473
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807431|ref|XP_002871599.1| lysine-sensitive aspartate kinase [Arabidopsis lyrata subsp. lyrata] gi|297317436|gb|EFH47858.1| lysine-sensitive aspartate kinase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/515 (78%), Positives = 458/515 (88%), Gaps = 1/515 (0%)
Query: 28 FAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKF 87
F+ + SSS + +V +SC LRVSCE R+D++ERK+ E + K+LTCVMKF
Sbjct: 31 FSVTLPSSSAVFRAVEHSCRNIA-LRVSCEDVRVDLLERKEHETCYSSATGKELTCVMKF 89
Query: 88 GGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDE 147
GGSS+ SAERM+EVA LILSFP+ERPVIVLSAMGKTTNKLL AGEKAV+CGVTN+ I+E
Sbjct: 90 GGSSVESAERMKEVANLILSFPDERPVIVLSAMGKTTNKLLKAGEKAVTCGVTNVESIEE 149
Query: 148 LSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTR 207
LSF+K+LH RT ELG++ ++I HLE L QLLKGI+M+KELT R+RDYLVSFGECMSTR
Sbjct: 150 LSFIKELHLRTALELGVETTVIEKHLEGLHQLLKGISMMKELTLRTRDYLVSFGECMSTR 209
Query: 208 IFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVT 267
+F+AYLNKIG KARQYDAF+IGFITTDDFTNADILEATYPAV+K L GDW + A+P+VT
Sbjct: 210 LFSAYLNKIGHKARQYDAFEIGFITTDDFTNADILEATYPAVSKTLVGDWSKENAVPVVT 269
Query: 268 GFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVP 327
GFLGK WR+CAITTLGRGGSDLTATTIGKALGL+EIQVWKDVDGVLTCDPNI+P A+ VP
Sbjct: 270 GFLGKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYPGAQSVP 329
Query: 328 YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLT 387
YLTFDEAAELAYFGAQVLHP SMRPAR+GDIPVRVKNSYNP APGT+I RSRDMSKAVLT
Sbjct: 330 YLTFDEAAELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAPGTVITRSRDMSKAVLT 389
Query: 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS 447
SIVLKRNVTMLDI STRMLGQYGFLAKVF+TFEDLGISVDVVATSEVS+SLTLDP+KLW
Sbjct: 390 SIVLKRNVTMLDIASTRMLGQYGFLAKVFTTFEDLGISVDVVATSEVSISLTLDPAKLWG 449
Query: 448 RELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQ 507
RELIQ+ +ELD++VEELEKIA+V LLQ RSIISLIGNVQ+SSLILEK F+VLR +GVNVQ
Sbjct: 450 RELIQRVNELDNLVEELEKIAVVKLLQRRSIISLIGNVQKSSLILEKVFQVLRSNGVNVQ 509
Query: 508 MISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542
MISQGASKVNISLIVND+EAEQCVRALH FFE+D
Sbjct: 510 MISQGASKVNISLIVNDEEAEQCVRALHSAFFETD 544
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 559 | ||||||
| TAIR|locus:2174708 | 544 | CARAB-AK-LYS [Arabidopsis thal | 0.880 | 0.904 | 0.806 | 3e-211 | |
| TAIR|locus:2078638 | 559 | AK3 "aspartate kinase 3" [Arab | 0.889 | 0.889 | 0.797 | 4.4e-210 | |
| TAIR|locus:2183896 | 569 | AK-LYS1 "aspartate kinase 1" [ | 0.878 | 0.862 | 0.797 | 5.6e-203 | |
| TIGR_CMR|SO_3986 | 451 | SO_3986 "aspartokinase III, ly | 0.783 | 0.971 | 0.342 | 3.6e-57 | |
| UNIPROTKB|P08660 | 449 | lysC "LysC" [Escherichia coli | 0.776 | 0.966 | 0.351 | 2.5e-56 | |
| UNIPROTKB|Q9KUW8 | 479 | VC_0391 "Aspartokinase" [Vibri | 0.783 | 0.914 | 0.331 | 3.4e-54 | |
| TIGR_CMR|VC_0391 | 479 | VC_0391 "aspartokinase III, ly | 0.783 | 0.914 | 0.331 | 3.4e-54 | |
| TIGR_CMR|CPS_2004 | 456 | CPS_2004 "aspartokinase III, l | 0.797 | 0.978 | 0.321 | 7e-54 | |
| UNIPROTKB|P00561 | 820 | thrA "ThrA" [Escherichia coli | 0.801 | 0.546 | 0.324 | 1.9e-51 | |
| UNIPROTKB|Q9KPK3 | 825 | VC_2364 "Aspartokinase I/homos | 0.799 | 0.541 | 0.309 | 1.6e-49 |
| TAIR|locus:2174708 CARAB-AK-LYS [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2042 (723.9 bits), Expect = 3.0e-211, P = 3.0e-211
Identities = 397/492 (80%), Positives = 446/492 (90%)
Query: 51 GLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPN 110
GLRVSCE R+D+++RK+ E + K+LTCVMKFGGSS+ SAERM+EVA LILSFP+
Sbjct: 52 GLRVSCEALRVDLLQRKEPETCDSSGTGKELTCVMKFGGSSVESAERMKEVANLILSFPD 111
Query: 111 ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIA 170
ERPVIVLSAMGKTTNKLL AGEKAV+CGVTN+ I+ELSF+K+LH RT ELG++ ++I
Sbjct: 112 ERPVIVLSAMGKTTNKLLKAGEKAVTCGVTNVESIEELSFIKELHLRTAHELGVETTVIE 171
Query: 171 THLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230
HLE L QLLKGI+M+KELT R+RDYLVSFGECMSTR+F+AYLNKIG KARQYDAF+IGF
Sbjct: 172 KHLEGLHQLLKGISMMKELTLRTRDYLVSFGECMSTRLFSAYLNKIGHKARQYDAFEIGF 231
Query: 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLT 290
ITTDDFTNADILEATYPAV+K L GDW + A+P+VTG+LGK WR+CAITTLGRGGSDLT
Sbjct: 232 ITTDDFTNADILEATYPAVSKTLVGDWSKENAVPVVTGYLGKGWRSCAITTLGRGGSDLT 291
Query: 291 ATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSM 350
ATTIGKALGL+EIQVWKDVDGVLTCDPNI+P A+ VPYLTFDEAAELAYFGAQVLHP SM
Sbjct: 292 ATTIGKALGLREIQVWKDVDGVLTCDPNIYPGAQSVPYLTFDEAAELAYFGAQVLHPLSM 351
Query: 351 RPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYG 410
RPAR+GDIPVRVKNSYNP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYG
Sbjct: 352 RPARDGDIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYG 411
Query: 411 FLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIV 470
FLAKVF+TFEDLGISVDVVATSEVS+SLTLDP+KLW RELIQ+ +ELD++VEELEKIA+V
Sbjct: 412 FLAKVFTTFEDLGISVDVVATSEVSISLTLDPAKLWGRELIQRVNELDNLVEELEKIAVV 471
Query: 471 NLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQC 530
LLQ RSIISLIGNVQ+SSLILEK F+V R +GVNVQMISQGASKVNISLIVND+EAEQC
Sbjct: 472 KLLQRRSIISLIGNVQKSSLILEKVFQVFRSNGVNVQMISQGASKVNISLIVNDEEAEQC 531
Query: 531 VRALHETFFESD 542
VRALH FFE+D
Sbjct: 532 VRALHSAFFETD 543
|
|
| TAIR|locus:2078638 AK3 "aspartate kinase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2031 (720.0 bits), Expect = 4.4e-210, P = 4.4e-210
Identities = 398/499 (79%), Positives = 448/499 (89%)
Query: 52 LRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNE 111
LRV+CE R++++ERK SE ++++EK+LTCVMKFGGSS+ASAERM +VA+LILSFP+E
Sbjct: 54 LRVTCEAGRVELLERKASETFKLNKTEKKLTCVMKFGGSSVASAERMIQVAKLILSFPDE 113
Query: 112 RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIAT 171
+PV+VLSAM KTTNKLL+AGEKAV CGVTN+ I+ELS++K+LH RT ELG++ ++IA
Sbjct: 114 KPVVVLSAMAKTTNKLLMAGEKAVCCGVTNVDTIEELSYIKELHIRTAHELGVETAVIAE 173
Query: 172 HLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231
HLE LEQLLKG+AM+KELT RSRDYLVSFGECMSTR+FAAYLNKIG KARQYDAF+IG I
Sbjct: 174 HLEGLEQLLKGVAMMKELTLRSRDYLVSFGECMSTRLFAAYLNKIGHKARQYDAFEIGII 233
Query: 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTA 291
TTDDFTNADILEATYPAV+K+L GDW + A+P+VTGFLGK WR+CA+TTLGRGGSDLTA
Sbjct: 234 TTDDFTNADILEATYPAVSKKLLGDWSKENALPVVTGFLGKGWRSCAVTTLGRGGSDLTA 293
Query: 292 TTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMR 351
TTIGKALGL+EIQVWKDVDGVLTCDPNI+ A+PVP+LTFDEAAELAYFGAQVLHP SMR
Sbjct: 294 TTIGKALGLREIQVWKDVDGVLTCDPNIYCGAQPVPHLTFDEAAELAYFGAQVLHPLSMR 353
Query: 352 PAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGF 411
PAREG+IPVRVKNSYNP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGF
Sbjct: 354 PAREGNIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDITSTRMLGQYGF 413
Query: 412 LAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVN 471
LAKVFSTFE LGISVDVVATSEVS+SLTLDPSK SRELIQ ELD VVEELEKIA+VN
Sbjct: 414 LAKVFSTFEKLGISVDVVATSEVSISLTLDPSKFCSRELIQH--ELDQVVEELEKIAVVN 471
Query: 472 LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCV 531
LL+HRSIISLIGNVQRSS ILEK FRVLR +G+NVQMISQGASKVNISLIVNDDEAE CV
Sbjct: 472 LLRHRSIISLIGNVQRSSFILEKGFRVLRTNGINVQMISQGASKVNISLIVNDDEAEHCV 531
Query: 532 RALHETFFESDLANLDCVC 550
+ALH FFE+D C
Sbjct: 532 KALHSAFFETDTCEAVSEC 550
|
|
| TAIR|locus:2183896 AK-LYS1 "aspartate kinase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1964 (696.4 bits), Expect = 5.6e-203, P = 5.6e-203
Identities = 397/498 (79%), Positives = 443/498 (88%)
Query: 53 RVSCEGARI---DVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFP 109
+VS G+R V+E KK+E + + EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP
Sbjct: 56 KVSGSGSRNIVRAVLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFP 114
Query: 110 NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSII 169
E PVIVLSAMGKTTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I
Sbjct: 115 EESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVI 174
Query: 170 ATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229
T+LEELEQLLKGIAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IG
Sbjct: 175 LTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIG 234
Query: 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDL 289
FITTDDFTN DILEATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDL
Sbjct: 235 FITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDL 294
Query: 290 TATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349
TATTIGKALGL+EIQVWKDVDGVLTCDP I+ A PVPYLTFDEAAELAYFGAQVLHPQS
Sbjct: 295 TATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQS 354
Query: 350 MRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQY 409
MRPAREG+IPVRVKNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ
Sbjct: 355 MRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQV 414
Query: 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAI 469
GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ ELDHVVEELEKIA+
Sbjct: 415 GFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQ--ELDHVVEELEKIAV 472
Query: 470 VNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQ 529
VNLL+ R+IISLIGNVQ SSLILE+AF VL GVNVQMISQGASKVNIS IVN+ EAE
Sbjct: 473 VNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEG 532
Query: 530 CVRALHETFFES-DLANL 546
CV+ALH++FFES DL+ L
Sbjct: 533 CVQALHKSFFESGDLSEL 550
|
|
| TIGR_CMR|SO_3986 SO_3986 "aspartokinase III, lysine-sensitive" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 159/464 (34%), Positives = 259/464 (55%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A M AE++L P+ R ++V+SA TN L+ +++++ +
Sbjct: 5 VAKFGGTSVADYGAMNRCAEIVLGNPDCR-LVVVSASSGVTNLLVELTQESIN----DDG 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE--LTPRSR---DYLV 198
+ L + + + +D+LG + A L++LL +A+L E ++ RS+ D L+
Sbjct: 60 RLQRLKQIAQIQYAILDKLGRPNDVAAA----LDKLLSRMAVLSEALVSARSKATMDELL 115
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-FTNADILEATYPAVAKRLHGDW 257
S GE S+ +FAA L + G + +D + + TD F A+ + A+ R H
Sbjct: 116 SLGEQCSSALFAAVLREKGANSSAFDVRRV--LRTDSHFGRAEP-QVEQIALLSREHLLP 172
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
+ + + GF+G A TTLGRGGSD +A + +AL +++W DV G+ T DP
Sbjct: 173 LLSEQVIVTQGFIG-ADEAGQTTTLGRGGSDYSAALLAEALTASAVEIWTDVAGIYTTDP 231
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
+ P+A P+ ++F+EAAE+A FGA+VLHP ++ PA I V V +S P GT IR
Sbjct: 232 RLAPNAHPIAEISFNEAAEMATFGAKVLHPATILPAVRQQIQVFVGSSKEPEKGGTWIRH 291
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
+ V ++ L+R+ T+L++ S +ML GFLA+ F+T ISVD++ TSEV++S
Sbjct: 292 QVE-DAPVFRAVALRRDQTLLNLHSLQMLHAQGFLAETFATLARHKISVDLITTSEVNVS 350
Query: 438 LTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAF 496
LTLD + + Q + +++EL + V + +++++IGN + ++ I + F
Sbjct: 351 LTLDKT---GSDSSGQGLLSEALLQELSQHCRVRVEDGLALVAIIGNRIATTAGICRRVF 407
Query: 497 RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540
VL NV+MI QGAS N+ ++V + EA Q V+ALHE FE
Sbjct: 408 EVLEPH--NVRMICQGASPHNLCVLVAESEAAQVVKALHENLFE 449
|
|
| UNIPROTKB|P08660 lysC "LysC" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 164/467 (35%), Positives = 252/467 (53%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS N R ++VLSA TN L+ E G+
Sbjct: 6 VSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLVALAE-----GLEPGE 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKEL-----TPRSRDYLV 198
++L ++++ ++ L I EE+E+LL+ I +L E +P D LV
Sbjct: 60 RFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDELV 115
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
S GE MST +F L + V+A+ +D + T D F A E A+A+ +
Sbjct: 116 SHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRA---EPDIAALAELAALQLL 171
Query: 259 TDL--AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
L + I GF+G + TTLGRGGSD TA + +AL + +W DV G+ T D
Sbjct: 172 PRLNEGLVITQGFIGSENKG-RTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD 230
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
P + AK + + F EAAE+A FGA+VLHP ++ PA DIPV V +S +P A GTL+
Sbjct: 231 PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVC 290
Query: 377 RSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSL 436
+ + + ++ L+RN T+L + S ML GFLA+VF ISVD++ TSEVS+
Sbjct: 291 NKTE-NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSV 349
Query: 437 SLTLDPSKLWSR--ELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILE 493
+LTLD + S L+ Q+ ++ EL + V + + ++++LIGN + ++ + +
Sbjct: 350 ALTLDTTGSTSTGDTLLTQS-----LLMELSALCRVEVEEGLALVALIGNDLSKACGVGK 404
Query: 494 KAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540
+ F VL N++MI GAS N+ +V ++AEQ V+ LH FE
Sbjct: 405 EVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449
|
|
| UNIPROTKB|Q9KUW8 VC_0391 "Aspartokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 155/467 (33%), Positives = 255/467 (54%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A+ E M + +I + P R ++V SA TN LL+ V+ +
Sbjct: 34 VAKFGGTSVANFEAMSRCSAIIENNPQTR-LVVSSACSGVTN-LLVELANGVASTERRQA 91
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKEL-----TPRSRDYLV 198
+ +L+ D+H+ +D+L D + + +E++ +L +A E + + D+LV
Sbjct: 92 ILQQLA---DIHYVIIDQLA-DPTRVE---KEVKAVLDSVASAAEAASFQSSKKLTDHLV 144
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-FTNADILEATYPAVAKRLHGDW 257
+ GE +ST I + + GV A ++D ++ + TDD + A+ +AK
Sbjct: 145 ACGELISTYILTQLMRERGVDAVRFDIREV--LRTDDHYGRAEPQLKEIAQLAKEKLVP- 201
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
+ + + + GF+G + TTLGRGGSD +A I +A+ +++W DV G+ + DP
Sbjct: 202 LCEQYVVVTQGFIGSDAQGNT-TTLGRGGSDYSAALIAEAVQASGLEIWTDVPGIYSTDP 260
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
I P A P+P ++F EA+E+A FGA++LHP ++ PA IPV V +S P GT IR+
Sbjct: 261 RIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFVGSSKEPEKGGTWIRK 320
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
+ S + ++ L+ N TM+ + S +M YGFLAKVF ISVD++ TSE+S+S
Sbjct: 321 QVE-SAPLYRALALRCNQTMVTLRSAQMFHAYGFLAKVFEILAKHKISVDLITTSEISVS 379
Query: 438 LTLDPSKLWSRELIQQASELDHVVE-ELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKA 495
LTLD + + A EL V ELE++ V + + +I+LIGN + S ++
Sbjct: 380 LTLDKT-----DTSGGAPELPEAVRAELEELCTVEVEYNLCLIALIGNKMKESRGYAKQV 434
Query: 496 FRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542
F VL N++MI GAS N+ ++++ ++Q V+ LH+ FE +
Sbjct: 435 FSVLE--DYNLRMICYGASAHNLCFLLHESVSKQAVQKLHKELFEQE 479
|
|
| TIGR_CMR|VC_0391 VC_0391 "aspartokinase III, lysine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 155/467 (33%), Positives = 255/467 (54%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A+ E M + +I + P R ++V SA TN LL+ V+ +
Sbjct: 34 VAKFGGTSVANFEAMSRCSAIIENNPQTR-LVVSSACSGVTN-LLVELANGVASTERRQA 91
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKEL-----TPRSRDYLV 198
+ +L+ D+H+ +D+L D + + +E++ +L +A E + + D+LV
Sbjct: 92 ILQQLA---DIHYVIIDQLA-DPTRVE---KEVKAVLDSVASAAEAASFQSSKKLTDHLV 144
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-FTNADILEATYPAVAKRLHGDW 257
+ GE +ST I + + GV A ++D ++ + TDD + A+ +AK
Sbjct: 145 ACGELISTYILTQLMRERGVDAVRFDIREV--LRTDDHYGRAEPQLKEIAQLAKEKLVP- 201
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
+ + + + GF+G + TTLGRGGSD +A I +A+ +++W DV G+ + DP
Sbjct: 202 LCEQYVVVTQGFIGSDAQGNT-TTLGRGGSDYSAALIAEAVQASGLEIWTDVPGIYSTDP 260
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
I P A P+P ++F EA+E+A FGA++LHP ++ PA IPV V +S P GT IR+
Sbjct: 261 RIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFVGSSKEPEKGGTWIRK 320
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
+ S + ++ L+ N TM+ + S +M YGFLAKVF ISVD++ TSE+S+S
Sbjct: 321 QVE-SAPLYRALALRCNQTMVTLRSAQMFHAYGFLAKVFEILAKHKISVDLITTSEISVS 379
Query: 438 LTLDPSKLWSRELIQQASELDHVVE-ELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKA 495
LTLD + + A EL V ELE++ V + + +I+LIGN + S ++
Sbjct: 380 LTLDKT-----DTSGGAPELPEAVRAELEELCTVEVEYNLCLIALIGNKMKESRGYAKQV 434
Query: 496 FRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542
F VL N++MI GAS N+ ++++ ++Q V+ LH+ FE +
Sbjct: 435 FSVLE--DYNLRMICYGASAHNLCFLLHESVSKQAVQKLHKELFEQE 479
|
|
| TIGR_CMR|CPS_2004 CPS_2004 "aspartokinase III, lysine-sensitive" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 151/469 (32%), Positives = 252/469 (53%)
Query: 76 ESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAV 135
+S LT V KFGG+S+A + M A +I + N ++V+SA TN L+ +K V
Sbjct: 5 QSTSSLT-VAKFGGTSVADYQAMLRCANIIKN-DNSNRLVVVSASSGVTNLLVRLSQKNV 62
Query: 136 SCGVTNISCIDELSFVKD--LHHRTVD-ELGIDRSIIATHLEELEQLLKGIAMLKELTPR 192
S + ++ + ++ H + D E +++ I + L+EL Q + L + + +
Sbjct: 63 SV-IEQKDIVENIRAIQVNITQHLSSDVEAQLNQEINSL-LDELTQ--HALTQLLQYSTK 118
Query: 193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAV-AK 251
+ D +++FGE S+RIFA L + + ++ + + T+ +++ + +
Sbjct: 119 TADAILAFGEQFSSRIFAQVLQSVDIPGEYFNVQQV--MKTNSLYGKAVVDLNQLSEQST 176
Query: 252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
+L + D I + GF+G+ + TTLGRGGSD +A + +AL + +W DV G
Sbjct: 177 QLLAPKLIDKVI-VTQGFIGQDSQGHT-TTLGRGGSDYSAALLAEALNGTNLSIWTDVVG 234
Query: 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
+ T DP I A+ + ++F EAAE+A FGA++LHP ++ PA +IPV V +S P
Sbjct: 235 IFTTDPRITDQARAIKEISFGEAAEMATFGAKILHPATLIPAMRRNIPVFVGSSKEPEKG 294
Query: 372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431
GT I++ D S SI L+R T++ + S ML GFLAKVF +S+D++ T
Sbjct: 295 GTQIKQKVD-SNPTYRSIALRREQTLVTVKSPAMLHASGFLAKVFGVLAKHELSIDLITT 353
Query: 432 SEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSL 490
SE+S++LT D ++ LI A VV ELE++ V++ S++++IGN + +
Sbjct: 354 SEISVALTFDNPSGSTQSLITNA-----VVAELEQLCEVSVEHGLSLVAVIGNGLTCAKG 408
Query: 491 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539
I + F + + VN+++I GAS N+ +VN+DEA V LH T F
Sbjct: 409 IGQSIFETI--NDVNIRLICHGASANNLCFLVNEDEANYVVEKLHNTLF 455
|
|
| UNIPROTKB|P00561 thrA "ThrA" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 538 (194.4 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 153/472 (32%), Positives = 243/472 (51%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVI-VLSAMGKTTNKLLLAGEKAVSC--GVT 140
V+KFGG+S+A+AER VA+++ S + V VLSA K TN L+ EK +S +
Sbjct: 3 VLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALP 62
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEE----LEQLLKGIAMLKELTPRSRDY 196
NIS + + F + L + G + + T +++ ++ +L GI++L +
Sbjct: 63 NISDAERI-FAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAA 121
Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--TNADILEATYPAVAKRLH 254
L+ GE MS I A L G D + + + + DI E+T A R+
Sbjct: 122 LICRGEKMSIAIMAGVLEARGHNVTVIDPVE-KLLAVGHYLESTVDIAESTRRIAASRIP 180
Query: 255 GDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
D + ++ GF + + LGR GSD +A + L ++W DVDGV T
Sbjct: 181 ADHMV-----LMAGFTAGNEKG-ELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYT 234
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTL 374
CDP P A+ + +++ EA EL+YFGA+VLHP+++ P + IP +KN+ NP APGTL
Sbjct: 235 CDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTL 294
Query: 375 IRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS 432
I SRD + + I N+ M + M G G A+VF+ ISV ++ ++S
Sbjct: 295 IGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSS 354
Query: 433 EVSLSLTLDPSKLWSRE-LIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSL- 490
E S+S + S E +Q+ L+ LE +A+ L +IIS++G+ R+
Sbjct: 355 EYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERL---AIISVVGDGMRTLRG 411
Query: 491 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542
I K F L R+ +N+ I+QG+S+ +IS++VN+D+A VR H+ F +D
Sbjct: 412 ISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTD 463
|
|
| UNIPROTKB|Q9KPK3 VC_2364 "Aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 1.6e-49, P = 1.6e-49
Identities = 146/471 (30%), Positives = 235/471 (49%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V+KFGGSSLA ER A++I + + V +VLSA GKTTNKL+ E A+ G
Sbjct: 9 VLKFGGSSLADPERFLRAADIIANNAQQEEVAVVLSAPGKTTNKLVAVIESALRQGEVEA 68
Query: 143 SCID-ELSFVKDLHHRTVDELGIDRSI----IATHLEELEQLLKGIAMLKELTPRSRDYL 197
++ E SF L +D S + + + +L Q + GI +L +
Sbjct: 69 QIVELESSFYALLDGIKAQLPNLDDSAYQQQVHSSMTQLRQFVHGITLLGMCPDNVNARI 128
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAV--AKRLHG 255
+S GE +S ++ A + G+ A D + ++ D LEA +R
Sbjct: 129 ISKGERVSIQLMKAVMEAKGLPANLVDP--VKYL----LAKGDHLEAMVDVEISTQRFRQ 182
Query: 256 DWITDLAIPIVTGFL-GKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
+ + I+ GF G A + LGR GSD +A + L ++W DVDGV
Sbjct: 183 APLPQQHVNIMPGFTAGNAQGE--LVCLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYN 240
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTL 374
CDP + A+ + L++ EA EL+YFGA VLHP+++ P + IP +KNS+NP GTL
Sbjct: 241 CDPRLVDDARLLKSLSYQEAMELSYFGASVLHPKTIAPIAQFQIPCLIKNSFNPQGAGTL 300
Query: 375 IRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS 432
I + K + I N+TM+++ M G G ++VF +S+ ++ ++S
Sbjct: 301 IGQDTGEDKLAIKGITTLSNLTMVNVSGPGMKGMVGMASRVFGAMSAADVSIVLITQSSS 360
Query: 433 EVSLSLTLDPS-KLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSL- 490
E S+S ++ K +++ + A EL+ LE + V+ + +II+L+G+ R+S
Sbjct: 361 EYSISFCIEAQHKALAQQALADAFELELKDGLLEPVEFVDNV---AIITLVGDGMRTSRG 417
Query: 491 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541
+ + F L VNV I+QG+S+ IS ++ DD+ + ++A HE F S
Sbjct: 418 VASQFFSSLAEVHVNVIAIAQGSSERAISAVIPDDKISEAIKACHENLFNS 468
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9S702 | AK3_ARATH | 2, ., 7, ., 2, ., 4 | 0.7545 | 0.9624 | 0.9624 | yes | no |
| Q9LYU8 | AK1_ARATH | 2, ., 7, ., 2, ., 4 | 0.7971 | 0.8783 | 0.8629 | no | no |
| O23653 | AK2_ARATH | 2, ., 7, ., 2, ., 4 | 0.7754 | 0.9338 | 0.9595 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.2 | 0.983 |
| 4th Layer | 2.7.2.4 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00037944001 | RecName- Full=Aspartokinase; EC=2.7.2.4; (569 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00030599001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (344 aa) | • | • | • | • | 0.970 | ||||
 | GSVIVG00017913001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (430 aa) | • | • | • | • | 0.947 | ||||
 | GSVIVG00026365001 | SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (363 aa) | • | • | • | 0.935 | |||||
 | GSVIVG00027272001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (403 aa) | • | • | 0.875 | ||||||
 | GSVIVG00017396001 | RecName- Full=Homoserine dehydrogenase; EC=1.1.1.3; (377 aa) | • | • | • | • | • | 0.872 | |||
 | GSVIVG00025551001 | RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa) | • | • | • | • | 0.869 | ||||
 | GSVIVG00024074001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (589 aa) | • | • | • | 0.839 | |||||
 | GSVIVG00012864001 | SubName- Full=Chromosome undetermined scaffold_408, whole genome shotgun sequence; (369 aa) | • | • | • | 0.810 | |||||
 | GSVIVG00016723001 | RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa) | • | 0.808 | |||||||
 | GSVIVG00032723001 | RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa) | • | 0.807 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 559 | |||
| PLN02551 | 521 | PLN02551, PLN02551, aspartokinase | 0.0 | |
| cd04244 | 298 | cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino | 1e-159 | |
| COG0527 | 447 | COG0527, LysC, Aspartokinases [Amino acid transpor | 1e-137 | |
| PRK06291 | 465 | PRK06291, PRK06291, aspartate kinase; Provisional | 1e-130 | |
| PRK09084 | 448 | PRK09084, PRK09084, aspartate kinase III; Validate | 1e-129 | |
| TIGR00657 | 441 | TIGR00657, asp_kinases, aspartate kinase | 1e-115 | |
| PRK09436 | 819 | PRK09436, thrA, bifunctional aspartokinase I/homos | 1e-105 | |
| cd04243 | 293 | cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino | 1e-101 | |
| TIGR00656 | 401 | TIGR00656, asp_kin_monofn, aspartate kinase, monof | 9e-97 | |
| cd04234 | 227 | cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa | 5e-91 | |
| cd04257 | 294 | cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina | 1e-84 | |
| PRK06635 | 404 | PRK06635, PRK06635, aspartate kinase; Reviewed | 3e-83 | |
| PRK09034 | 454 | PRK09034, PRK09034, aspartate kinase; Reviewed | 2e-81 | |
| cd04258 | 292 | cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami | 2e-78 | |
| PRK08961 | 861 | PRK08961, PRK08961, bifunctional aspartate kinase/ | 4e-77 | |
| cd04246 | 239 | cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino | 1e-66 | |
| PRK08210 | 403 | PRK08210, PRK08210, aspartate kinase I; Reviewed | 1e-61 | |
| cd04261 | 239 | cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino | 4e-61 | |
| cd04245 | 288 | cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami | 6e-61 | |
| cd02115 | 248 | cd02115, AAK, Amino Acid Kinases (AAK) superfamily | 4e-60 | |
| cd04260 | 244 | cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A | 9e-54 | |
| cd04259 | 295 | cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki | 2e-48 | |
| PRK07431 | 587 | PRK07431, PRK07431, aspartate kinase; Provisional | 7e-45 | |
| PRK09466 | 810 | PRK09466, metL, bifunctional aspartate kinase II/h | 4e-41 | |
| cd04933 | 78 | cd04933, ACT_AK1-AT_1, ACT domains located C-termi | 4e-41 | |
| PRK08373 | 341 | PRK08373, PRK08373, aspartate kinase; Validated | 6e-41 | |
| cd04247 | 306 | cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kina | 1e-40 | |
| PRK08841 | 392 | PRK08841, PRK08841, aspartate kinase; Validated | 1e-40 | |
| PRK05925 | 440 | PRK05925, PRK05925, aspartate kinase; Provisional | 3e-40 | |
| pfam00696 | 230 | pfam00696, AA_kinase, Amino acid kinase family | 2e-38 | |
| TIGR02078 | 327 | TIGR02078, AspKin_pair, Pyrococcus aspartate kinas | 5e-34 | |
| cd04918 | 65 | cd04918, ACT_AK1-AT_2, ACT domains located C-termi | 1e-32 | |
| cd04912 | 75 | cd04912, ACT_AKiii-LysC-EC-like_1, ACT domains loc | 4e-26 | |
| PRK09181 | 475 | PRK09181, PRK09181, aspartate kinase; Validated | 8e-26 | |
| cd04892 | 65 | cd04892, ACT_AK-like_2, ACT domains C-terminal to | 9e-19 | |
| cd04248 | 304 | cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Aci | 9e-17 | |
| cd04890 | 62 | cd04890, ACT_AK-like_1, ACT domains found C-termin | 2e-15 | |
| cd04932 | 75 | cd04932, ACT_AKiii-LysC-EC_1, ACT domains located | 2e-13 | |
| cd04868 | 60 | cd04868, ACT_AK-like, ACT domains C-terminal to th | 2e-12 | |
| cd04917 | 64 | cd04917, ACT_AKiii-LysC-EC_2, ACT domains located | 3e-12 | |
| cd04924 | 66 | cd04924, ACT_AK-Arch_2, ACT domains of a monofunct | 1e-10 | |
| cd04916 | 66 | cd04916, ACT_AKiii-YclM-BS_2, ACT domains located | 8e-10 | |
| cd04936 | 63 | cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of t | 4e-09 | |
| cd04919 | 66 | cd04919, ACT_AK-Hom3_2, ACT domains located C-term | 5e-09 | |
| cd04922 | 66 | cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the b | 6e-09 | |
| cd04923 | 63 | cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of t | 9e-09 | |
| cd04921 | 80 | cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of | 1e-08 | |
| cd04935 | 75 | cd04935, ACT_AKiii-DAPDC_1, ACT domains of a bifun | 3e-08 | |
| cd04868 | 60 | cd04868, ACT_AK-like, ACT domains C-terminal to th | 7e-08 | |
| cd04915 | 66 | cd04915, ACT_AK-Ectoine_2, ACT domains located C-t | 7e-07 | |
| PRK07431 | 587 | PRK07431, PRK07431, aspartate kinase; Provisional | 9e-07 | |
| cd04254 | 231 | cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t | 6e-06 | |
| cd04239 | 229 | cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase | 8e-06 | |
| TIGR00657 | 441 | TIGR00657, asp_kinases, aspartate kinase | 2e-05 | |
| COG0528 | 238 | COG0528, PyrH, Uridylate kinase [Nucleotide transp | 2e-05 | |
| PRK00358 | 231 | PRK00358, pyrH, uridylate kinase; Provisional | 4e-05 | |
| cd04934 | 73 | cd04934, ACT_AK-Hom3_1, CT domains located C-termi | 5e-05 | |
| TIGR02075 | 232 | TIGR02075, pyrH_bact, uridylate kinase | 6e-05 | |
| cd04920 | 63 | cd04920, ACT_AKiii-DAPDC_2, ACT domains of a bifun | 1e-04 | |
| PRK07431 | 587 | PRK07431, PRK07431, aspartate kinase; Provisional | 2e-04 | |
| cd04923 | 63 | cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of t | 3e-04 | |
| TIGR00656 | 401 | TIGR00656, asp_kin_monofn, aspartate kinase, monof | 6e-04 | |
| cd04936 | 63 | cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of t | 9e-04 |
| >gnl|CDD|178166 PLN02551, PLN02551, aspartokinase | Back alignment and domain information |
|---|
Score = 990 bits (2562), Expect = 0.0
Identities = 419/512 (81%), Positives = 451/512 (88%), Gaps = 2/512 (0%)
Query: 31 CVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGS 90
S LRV+C R++ + SE +EKQLT VMKFGGS
Sbjct: 2 VPVGGGSARRRSVGSSCRNIVLRVNCSAGRVEALVEAPSETRQGGGTEKQLTVVMKFGGS 61
Query: 91 SLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150
S+ASAERMREVA+LILSFP+ERPV+VLSAMGKTTN LLLAGEKAVSCGVTN+S I+ELS
Sbjct: 62 SVASAERMREVADLILSFPDERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEELSA 121
Query: 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFA 210
+++LH RT DELG+D S++ L+ELEQLLKGIAM+KELTPR+RDYLVSFGE MSTRIFA
Sbjct: 122 IRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFA 181
Query: 211 AYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFL 270
AYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI D A+P+VTGFL
Sbjct: 182 AYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFL 241
Query: 271 GKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330
GK W+T AITTLGRGGSDLTATTIGKALGL+EIQVWKDVDGVLTCDP I+P+A PVPYLT
Sbjct: 242 GKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLT 301
Query: 331 FDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV 390
FDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP APGTLI ++RDMSKAVLTSIV
Sbjct: 302 FDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPGTLITKTRDMSKAVLTSIV 361
Query: 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSREL 450
LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVS+SLTLDPSKLWSREL
Sbjct: 362 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSREL 421
Query: 451 IQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMIS 510
IQQ ELDH+VEELEKIA+VNLLQ RSIISLIGNVQRSSLILEK FRVLR +GVNVQMIS
Sbjct: 422 IQQ--ELDHLVEELEKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS 479
Query: 511 QGASKVNISLIVNDDEAEQCVRALHETFFESD 542
QGASKVNISLIVNDDEAEQCVRALH FFE D
Sbjct: 480 QGASKVNISLIVNDDEAEQCVRALHSAFFEGD 511
|
Length = 521 |
| >gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
|---|
Score = 454 bits (1170), Expect = e-159
Identities = 163/300 (54%), Positives = 198/300 (66%), Gaps = 7/300 (2%)
Query: 82 TCVMKFGGSSLASAERMREVAELIL-SFPNERPVIVLSAMGKTTNKLLLAGEKAVS---C 137
VMKFGG+S+ SAER+R VA+L+ V+V+SAMG T++LLLA E AVS
Sbjct: 1 RLVMKFGGTSVGSAERIRHVADLVGTYAEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIA 60
Query: 138 GVTNISCIDELSFVKDLHHRTVDELGI-DRSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
GV + I L +K DE SII + LEELE+LL GIA L ELTPRSRDY
Sbjct: 61 GVKDFIEILRLRHIKAAKEAISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDY 120
Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD 256
+VSFGE +S IF+A L +G+KAR D + G IT D+F NA L ATY V KRL
Sbjct: 121 IVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPM 180
Query: 257 WITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
D IP+VTGF+G AITTLGRGGSD +AT IG AL EI +WKDVDGV+T D
Sbjct: 181 L-EDGKIPVVTGFIGAT-EDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTAD 238
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
P I P A+ +P L++ EA ELAYFGA+VLHP+++ PA E IPVRVKN++NP APGTLI
Sbjct: 239 PRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT 298
|
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298 |
| >gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 404 bits (1040), Expect = e-137
Identities = 164/463 (35%), Positives = 256/463 (55%), Gaps = 23/463 (4%)
Query: 83 CVMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVT 140
V KFGG+S+A AER+ VA+++ E + V+V+SAMG T+ L+ E A S
Sbjct: 4 IVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRD- 62
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
+D+ + + I + + E +++L GIA+L E++PR RD L+S
Sbjct: 63 ----AVAEQRHRDIASELILDPFIAARLAEV-IAEFKKVLLGIALLGEVSPRERDELLSL 117
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL-EATYPAVAKRLHGDWIT 259
GE +S + AA LN +GV AR D G T + NA IL E + + + L
Sbjct: 118 GERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEG--- 174
Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
+P+V GF G TTLGRGGSD +A + ALG E+++W DVDGV T DP I
Sbjct: 175 --KVPVVAGFQGIN-EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRI 231
Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR 379
P A+ +P ++++EA ELAY GA+VLHP+++ PA IP+R+KN++NP+APGTLI
Sbjct: 232 VPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPGTLITAET 291
Query: 380 DMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLT 439
+ + V+ I L NV ++ + M G GF A+VF + GI+VD++ S +S++
Sbjct: 292 ESDEPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVSIS 351
Query: 440 LDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAFRV 498
+ + ++ L EL V + +++S++G RS+ + + F+
Sbjct: 352 FTVPESDAPRALR---ALLEEKLELLAEVEVE--EGLALVSIVGAGMRSNPGVAARIFQA 406
Query: 499 LRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541
L +N+ MIS +S+++IS +V++ +AE+ VRALHE FF
Sbjct: 407 LAEENINIIMIS--SSEISISFVVDEKDAEKAVRALHEAFFLG 447
|
Length = 447 |
| >gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 388 bits (999), Expect = e-130
Identities = 179/469 (38%), Positives = 285/469 (60%), Gaps = 25/469 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
VMKFGG+S+ ER+R VA+L+ + +E V+V+SAM T+ LL E+A+ +
Sbjct: 4 VMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVR--D 61
Query: 142 ISCIDEL-SFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELTPRS 193
I+ + + + +++ H++ ++E D I + +EELE+ L G++ L ELTPRS
Sbjct: 62 IAKVKDFIADLRERHYKAIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRS 121
Query: 194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL 253
RDY++SFGE +S I + L +G+K+ + G IT +F NA L TY V +RL
Sbjct: 122 RDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERL 181
Query: 254 HGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313
+ + IP+VTGF+G ITTLGRGGSD +A IG AL EI +W DVDGV+
Sbjct: 182 EPL-LKEGVIPVVTGFIG-ETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVM 239
Query: 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGT 373
T DP I P A+ +P +++ EA EL+YFGA+VLHP+++ PA E IPVRVKN++NP PGT
Sbjct: 240 TTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGT 299
Query: 374 LIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--T 431
LI + SK V+ ++ L +NV +++I M+G G A++FS + G++V +++ +
Sbjct: 300 LITSDSESSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS 359
Query: 432 SEVSLSLTLDPSKLWSRELIQQASEL-DHVVEELEKIAIVNLLQHRSIISLIGNVQRSSL 490
SE ++SL +D + L + L E + +V ++ V +++++G +
Sbjct: 360 SESNISLVVDEADL-EKALKALRREFGEGLVRDVTFDKDVC------VVAVVGAGMAGTP 412
Query: 491 -ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538
+ + F L SG+N++MISQG+S+VNIS +V++++ E+ V+ LH+ F
Sbjct: 413 GVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEF 461
|
Length = 465 |
| >gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated | Back alignment and domain information |
|---|
Score = 384 bits (989), Expect = e-129
Identities = 169/477 (35%), Positives = 253/477 (53%), Gaps = 50/477 (10%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS PN ++VLSA TN L+ E A G ++
Sbjct: 3 VAKFGGTSVADFDAMNRSADIVLSNPN-TRLVVLSASAGVTNLLVALAEGAEP-GDERLA 60
Query: 144 CIDELSFVKDLHHRTVDELGIDRSI---IATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
+DE ++ + + +D LG + I LE + L + ++ +P D LVS
Sbjct: 61 LLDE---IRQIQYAILDRLGDPNVVREEIERLLENITVLAEAASL--ATSPALTDELVSH 115
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA-----DILEATYPAVAKRLHG 255
GE MST +F L + GV+A +D + T D F A + E + L
Sbjct: 116 GELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGRAEPDVAALAELAQEQLLPLL-- 172
Query: 256 DWITDLAIPIVTGFLG--KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313
+ + GF+G + RT TTLGRGGSD +A + +AL +++W DV G+
Sbjct: 173 ----AEGVVVTQGFIGSDEKGRT---TTLGRGGSDYSAALLAEALNASRVEIWTDVPGIY 225
Query: 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGT 373
T DP I P AK + ++F+EAAE+A FGA+VLHP ++ PA +IPV V +S +P A GT
Sbjct: 226 TTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGT 285
Query: 374 LIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE 433
I + +I L+RN T+L + S ML GFLA+VF ISVD++ TSE
Sbjct: 286 WICNDTENPPLF-RAIALRRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTSE 344
Query: 434 VSLSLTLD-------PSKLWSRELIQQASELDHV-VEELEKIAIVNLLQHRSIISLIGN- 484
VS+SLTLD L ++ L+ + S+L V VEE L ++++LIGN
Sbjct: 345 VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCRVEVEE-------GL----ALVALIGNN 393
Query: 485 VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541
+ ++ + ++ F VL N++MI GAS N+ +V + +AEQ V+ALH+ FE
Sbjct: 394 LSKACGVAKRVFGVL--EPFNIRMICYGASSHNLCFLVPESDAEQVVQALHQNLFEG 448
|
Length = 448 |
| >gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase | Back alignment and domain information |
|---|
Score = 347 bits (893), Expect = e-115
Identities = 164/464 (35%), Positives = 255/464 (54%), Gaps = 33/464 (7%)
Query: 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ +AER+R VA+++L + V+V+SAM T+ L+ E+A
Sbjct: 4 VQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPS-- 61
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
+ L +++ H ++R I EEL++LL +L E PR D ++SFG
Sbjct: 62 ---KEFLEKIREKH-----IEILERLIPQAIAEELKRLLDAELVL-EEKPREMDRILSFG 112
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA-DILEATYPAVAKRLHGDWITD 260
E +S + +A L ++GVKA + G +T +F A I+E + L
Sbjct: 113 ERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEG---- 168
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
IP+V GF G A TTLGRGGSD TA + AL E +++ DVDG+ T DP I
Sbjct: 169 -IIPVVAGFQG-ATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIV 226
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD 380
P A+ + ++++E ELA FGA+VLHP+++ PA IP+ VK+++NP APGTLI S
Sbjct: 227 PDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLIVASTK 286
Query: 381 -MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLS 437
M + ++ + L RN + + M G GFLA+VF + GI+VD++ +SE S+S
Sbjct: 287 EMEEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGINVDLITQSSSETSIS 345
Query: 438 LTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAF 496
T+D +E QA L L ++ V + + + +SL+G +S+ + K F
Sbjct: 346 FTVD------KEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVASKIF 399
Query: 497 RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540
L ++G+N++MIS S++NIS +V++ +AE+ VR LH FE
Sbjct: 400 EALAQNGINIEMISS--SEINISFVVDEKDAEKAVRLLHNALFE 441
|
Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441 |
| >gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Score = 334 bits (860), Expect = e-105
Identities = 150/475 (31%), Positives = 244/475 (51%), Gaps = 30/475 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILS-FPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V+KFGG+S+A+AER VA++I S E+ +VLSA K TN L+ EKA
Sbjct: 3 VLKFGGTSVANAERFLRVADIIESNARQEQVAVVLSAPAKVTNHLVAMIEKAA----KGD 58
Query: 143 SCIDELSFVKDLHHRTVDEL-----GIDRS----IIATHLEELEQLLKGIAMLKELTPRS 193
E+ + + H +D L G D + + +L+ +L GI++L E
Sbjct: 59 DAYPEILDAERIFHELLDGLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSV 118
Query: 194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEAT--YPAVAK 251
++S GE +S I AA L G D + + D LE+T +
Sbjct: 119 NAAIISRGERLSIAIMAAVLEARGHDVTVIDPRE--LLLAD----GHYLESTVDIAESTR 172
Query: 252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
R+ +I + ++ GF + TLGR GSD +A + L ++W DVDG
Sbjct: 173 RIAASFIPADHVILMPGFTAGN-EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDG 231
Query: 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
V T DP + P A+ + L++ EA EL+YFGA+VLHP+++ P + IP +KN++NP AP
Sbjct: 232 VYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAP 291
Query: 372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV-- 429
GTLI D + I N+ M ++ M G G ++VF+ GISV ++
Sbjct: 292 GTLIGAESDEDSLPVKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQ 351
Query: 430 ATSEVSLSLTLDPSKL-WSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRS 488
++SE S+S + S ++ +++ L+ LE + + L +IIS++G+ R+
Sbjct: 352 SSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENL---AIISVVGDGMRT 408
Query: 489 SL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542
I K F L R+ +N+ I+QG+S+ +IS+++++D+A + +RA H++FF SD
Sbjct: 409 HPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQSFFLSD 463
|
Length = 819 |
| >gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 306 bits (787), Expect = e-101
Identities = 115/299 (38%), Positives = 180/299 (60%), Gaps = 16/299 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V+KFGG+S+ASAER+R VA++I S + ++V+SA+G TN+L+ E A S
Sbjct: 3 VLKFGGTSVASAERIRRVADIIKSRASSPVLVVVSALGGVTNRLVALAELAASGDDAQAI 62
Query: 144 CIDELSFVKDLHHRTVDELGID------RSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
+ E+ ++ H + EL + + + LE L+ LL+GI +L EL+ ++R +
Sbjct: 63 VLQEI---RERHLDLIKELLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEV 119
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
+SFGE +S+R+ +AYL + G+ A DA ++ +T D F NA + +RL
Sbjct: 120 LSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDGFLNAVVD---LKLSKERLA-QL 174
Query: 258 ITDLA-IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
+ + + + GF+ TTLGRGGSD +A + L +E+++W DVDGV T D
Sbjct: 175 LAEHGKVVVTQGFIASN-EDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTAD 233
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
P P A+ + L++DEA ELAYFGA+VLHP++++PA +IP+ +KN++NP APGTLI
Sbjct: 234 PRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLI 292
|
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293 |
| >gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Score = 299 bits (768), Expect = 9e-97
Identities = 160/467 (34%), Positives = 235/467 (50%), Gaps = 78/467 (16%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ S ER++ A ++L E + V+V+SAM T+ L+ EKA+
Sbjct: 4 VQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIR----- 58
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
+TPR RD LVS G
Sbjct: 59 ---------------------------------------------DAITPRERDELVSHG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E +S+ +F+ L +GVKA D + G IT D+F NA I A +RL + +
Sbjct: 74 ERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDII---ATEERLL-PLLEEG 129
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
I +V GF G A TTLGRGGSD TA + AL + ++ DV GV T DP +
Sbjct: 130 IIVVVAGFQG-ATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVE 188
Query: 322 HAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM 381
AK + ++++EA ELA FGA+VLHP+++ PA +P+ V++S++P GTLI S +
Sbjct: 189 AAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE-EGTLITNSMEN 247
Query: 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLT 439
V I L++NVT + + MLG+ GFLA++F + I+VD+++ SE S+SLT
Sbjct: 248 PPLV-KGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLT 306
Query: 440 LDPSKLWS--RELIQQ--ASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRS-SLILEK 494
+D + R L Q A+ LD V E E +A V S++G + +
Sbjct: 307 VDETDADEAVRALKDQSGAAGLDRVEVE-EGLAKV---------SIVGAGMVGAPGVASE 356
Query: 495 AFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541
F L +N+ MI G+S+ NIS +V++ +AE+ VR LHE F ES
Sbjct: 357 IFSALEEKNINILMI--GSSETNISFLVDEKDAEKAVRKLHEVFEES 401
|
This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401 |
| >gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 5e-91
Identities = 115/296 (38%), Positives = 160/296 (54%), Gaps = 74/296 (25%)
Query: 83 CVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ASAER++ VA++I ++ R V+V+SAMG GVT+
Sbjct: 2 VVQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMG----------------GVTD 45
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
L +L L+SFG
Sbjct: 46 ---------------------------------LLIELA---------------LLLSFG 57
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL--HGDWIT 259
E +S R+ AA L G+KAR DA G T D+ A I+E +Y + + L G
Sbjct: 58 ERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGK--- 114
Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
+P+VTGF+G+ ITTLGRGGSD +A + ALG E+++W DVDG+ T DP I
Sbjct: 115 ---VPVVTGFIGRN-EDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170
Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
P A+ +P +++DEA ELAYFGA+VLHP+++ PAR+ +IP+RVKN++NP APGTLI
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLI 226
|
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227 |
| >gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 1e-84
Identities = 114/300 (38%), Positives = 175/300 (58%), Gaps = 17/300 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V+KFGG+SLA+AER+R VA++IL+ E+ +V+SA GK T+ LL E A S +
Sbjct: 3 VLKFGGTSLANAERIRRVADIILNAAKQEQVAVVVSAPGKVTDLLLELAELASS---GDD 59
Query: 143 SCIDELSFVKDLHHRTVDEL------GIDRSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
+ D L ++ H + EL S + LEEL+ LL+GI +L EL R
Sbjct: 60 AYEDILQELESKHLDLITELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAK 119
Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD 256
++SFGE +S R+ +A LN+ G+ A DA ++ +T + NA + +R+
Sbjct: 120 VLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDGGYLNAVVDIE---LSKERIK-A 174
Query: 257 WITDLA-IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315
W + + +VTGF+ TTLGR GSD +A + L ++++W DVDGV +
Sbjct: 175 WFSSNGKVIVVTGFIASN-PQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSA 233
Query: 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
DP A+ +P L++ EA EL+YFGA+VLHP++++P + +IP+ +KN++NP APGTLI
Sbjct: 234 DPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLI 293
|
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Length = 294 |
| >gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 3e-83
Identities = 143/467 (30%), Positives = 228/467 (48%), Gaps = 82/467 (17%)
Query: 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ ER++ VAE + + + V+V+SAMG TT
Sbjct: 5 VQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTT----------------- 47
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP----RSRDYL 197
DEL + + KE++P R D L
Sbjct: 48 ------------------DEL--------------------LDLAKEVSPLPDPRELDML 69
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL-HGD 256
+S GE +S + A L +GVKAR + + G IT A I + + + L GD
Sbjct: 70 LSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGD 129
Query: 257 WITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
+ +V GF G ITTLGRGGSD TA + AL E +++ DVDGV T D
Sbjct: 130 ------VVVVAGFQGVD-EDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTD 182
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
P I P A+ + ++++E ELA GA+VLHP+S+ A++ ++P+RV++S++ + PGTLI
Sbjct: 183 PRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS-DNPGTLIT 241
Query: 377 RSRD--MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEV 434
+ M + V+T I ++ + +V + + G A++F + I+VD++ + V
Sbjct: 242 GEEEEIMEQPVVTGIAFDKDEAKVTVV--GVPDKPGIAAQIFGALAEANINVDMIVQN-V 298
Query: 435 SLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSI--ISLIGNVQRS-SLI 491
S D + R+ +++A EL E ++I ++ I +S++G RS +
Sbjct: 299 SEDGKTDITFTVPRDDLEKALELLE--EVKDEIGAESVTYDDDIAKVSVVGVGMRSHPGV 356
Query: 492 LEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538
K F L G+N+QMIS S++ IS+++++ E VRALHE F
Sbjct: 357 AAKMFEALAEEGINIQMIS--TSEIKISVLIDEKYLELAVRALHEAF 401
|
Length = 404 |
| >gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 262 bits (671), Expect = 2e-81
Identities = 146/471 (30%), Positives = 238/471 (50%), Gaps = 31/471 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK------LLLAGEKAVSC 137
V+KFGGSSLASAE+ ++V ++ S P ER ++V+SA GK + LL+ +AV
Sbjct: 3 VVKFGGSSLASAEQFKKVLNIVKSDP-ERKIVVVSAPGKRFKEDTKVTDLLILYAEAV-- 59
Query: 138 GVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
+ D + + ELG+D I+ E LE L R D
Sbjct: 60 -LAGEDYEDIFEAIIARYAEIAKELGLDADILEKIEEILEHLANL---ASRNPDRLLDAF 115
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
+ GE ++ ++ AAYLN G+ AR D + G I TD+ NA +L +Y + K D
Sbjct: 116 KARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDE 175
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
L IP GF G + I T RGGSD+T + + + + + DVDG+ +P
Sbjct: 176 K--LVIP---GFFG-VTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANP 229
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
I + K + +T+ E EL+Y G V H +++ PA G IP+ +KN+ NP PGTLI
Sbjct: 230 RIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVP 289
Query: 378 SRD-MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSL 436
RD +K +T I + T + I M + GF KV ED GIS + + + L
Sbjct: 290 DRDNKNKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPSGIDDL 349
Query: 437 SLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQ---HRSIISLIGNVQRSSL-IL 492
S+ + +L + + + ++ E+++ + L+ +II ++G R ++ +
Sbjct: 350 SIIIRERQL-TPKKEDE------ILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVA 402
Query: 493 EKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDL 543
K + L + +N+QMI+QG+S+++I V +++AE+ V+A++ FF+ L
Sbjct: 403 AKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYNAFFKEVL 453
|
Length = 454 |
| >gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 2e-78
Identities = 116/301 (38%), Positives = 166/301 (55%), Gaps = 19/301 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A M A ++ S + ++V+SA TN L+ + A S I
Sbjct: 3 VAKFGGTSVADYAAMLRCAAIVKSDAS-VRLVVVSASAGVTNLLVALADAAES--GEEIE 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIA---THLEELEQLLKGIAMLKELTPRSRDYLVSF 200
I +L ++ +H ++ LG + A LEEL QL +G A+L EL+P SRD L+SF
Sbjct: 60 SIPQLHEIRAIHFAILNRLGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSF 119
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE MS+ +F+ L + GV A +D + T F A A+A+ +
Sbjct: 120 GERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGRAAPDL---NALAEL-AAKLLKP 174
Query: 261 LAIP--IVT-GFLGK--AWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315
L +VT GF+G RT TTLGRGGSD +A + +AL +E+Q+W DV G+ T
Sbjct: 175 LLAGTVVVTQGFIGSTEKGRT---TTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTT 231
Query: 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
DP I P A+ + ++F EAAE+A FGA+VLHP ++ PA +IPV V +S +P A GTLI
Sbjct: 232 DPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLI 291
Query: 376 R 376
Sbjct: 292 T 292
|
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292 |
| >gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Score = 260 bits (666), Expect = 4e-77
Identities = 134/470 (28%), Positives = 242/470 (51%), Gaps = 30/470 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V+KFGG+S++ R +A+++ E R ++V+SA+ +N+L E ++
Sbjct: 11 VLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNEL----EAIIAAAGAG 66
Query: 142 ISCIDELSFVKDLHHRTVDELGID-RSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
S ++ ++ H + ELG+D +++A L L++LL GI L + R + ++
Sbjct: 67 DS-ASRVAAIRQRHRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQ 125
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD--WI 258
GE +ST + AAYL G+ DA + ++ + Y +V+ + D
Sbjct: 126 GELLSTTLGAAYLEASGLDMGWLDAREW-LTALPQPNQSE--WSQYLSVSCQWQSDPALR 182
Query: 259 TDLA-----IPIVTGFLGK-AWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
A + I GF+ + A A+ LGRGGSD +A LG +++W DV G+
Sbjct: 183 ERFAAQPAQVLITQGFIARNADGGTAL--LGRGGSDTSAAYFAAKLGASRVEIWTDVPGM 240
Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPG 372
+ +P P A+ + L +DEA E+A GA+VLHP+S++P R+ IP+ + ++ P+ G
Sbjct: 241 FSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSG 300
Query: 373 TLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432
T I + V +I K + ++ + + M Q GFLA VF+ F+ G+SVD++++S
Sbjct: 301 TSIDGDAEPVPGV-KAISRKNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISSS 359
Query: 433 EVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLI- 491
E +++++LDPS E + L + +L +I V ++ + +SL+G RS L
Sbjct: 360 ETNVTVSLDPS-----ENLVNTDVLAALSADLSQICRVKIIVPCAAVSLVGRGMRSLLHK 414
Query: 492 LEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541
L A+ V +ISQ ++ +N++ ++++ +A+ + LH ES
Sbjct: 415 LGPAWATFGAE--RVHLISQASNDLNLTFVIDESDADGLLPRLHAELIES 462
|
Length = 861 |
| >gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 1e-66
Identities = 101/296 (34%), Positives = 149/296 (50%), Gaps = 64/296 (21%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLL-LAGEKAVSCGVT 140
V KFGG+S+A ER++ VAE I + + V+V+SAMG TT++L+ LA K VS
Sbjct: 3 VQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLA--KEVS---- 56
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
+PR D L+S
Sbjct: 57 ----------------------------------------------PRPSPRELDMLLST 70
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLH-GDWIT 259
GE +S + A LN++G+KA + G +T D NA I++ + + L GD
Sbjct: 71 GEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGD--- 127
Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
+ +V GF G ITTLGRGGSD TA + AL +++ DVDGV T DP I
Sbjct: 128 ---VVVVAGFQG-VNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRI 183
Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
P A+ + +++DE E+A GA+VLHP+S+ A++ ++P+RV++S++ N PGTLI
Sbjct: 184 VPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN-PGTLI 238
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239 |
| >gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 1e-61
Identities = 131/473 (27%), Positives = 227/473 (47%), Gaps = 95/473 (20%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGK-----TTNKLLLAGEKAVS 136
V KFGG+S+++ ER + I E + V+V+SAMG+ T+ LL
Sbjct: 5 VQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLL-------- 56
Query: 137 CGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
S V + E++ R +D
Sbjct: 57 ------------SLVGEEF-------------------------------SEISKREQDL 73
Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD 256
L+S GE +S+ +F+ LN+ G+KA G IT D+FTNA I+E R+ +
Sbjct: 74 LMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVN----PDRIL-E 128
Query: 257 WITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
+ + + +V GF G ITTLGRGGSD TA +G AL + + ++ DVDG++T D
Sbjct: 129 ALEEGDVVVVAGFQGVT-ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTAD 187
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI- 375
P I A+ + ++++E ++AY GA+V+HP+++ A + +IP+R++++Y+ ++PGTLI
Sbjct: 188 PRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYS-DSPGTLIT 246
Query: 376 -----RRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV-- 428
+ D+ + ++T I NVT + + + Y +VF + GISVD
Sbjct: 247 SLGDAKGGIDVEERLITGIAHVSNVTQIKVKAKE--NAYDLQQEVFKALAEAGISVDFIN 304
Query: 429 VATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAI-VNLLQHRSIISLIGNVQR 487
+ +EV ++ S E ++A E+ LE + + ++ ++ + +S++G
Sbjct: 305 IFPTEVVFTV--------SDEDSEKAKEI------LENLGLKPSVRENCAKVSIVGAGMA 350
Query: 488 S-SLILEKAFRVLRRSGVNVQMISQGA-SKVNISLIVNDDEAEQCVRALHETF 538
++ K L G+ I Q A S I ++V +++ E+ V ALH+ F
Sbjct: 351 GVPGVMAKIVTALSEEGIE---ILQSADSHTTIWVLVKEEDMEKAVNALHDAF 400
|
Length = 403 |
| >gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 4e-61
Identities = 98/299 (32%), Positives = 143/299 (47%), Gaps = 70/299 (23%)
Query: 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLL-LAGEKAVSCGVT 140
V KFGG+S+AS ER++ VAE I + V+V+SAMG TT++L+ LA K +S
Sbjct: 3 VQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELA--KEIS---- 56
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
R D L+S
Sbjct: 57 ----------------------------------------------PRPPARELDVLLST 70
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE +S + A LN++G+KA + G +T A I++ + D I +
Sbjct: 71 GEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIID---------IDPDRIRE 121
Query: 261 L----AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
L + IV GF G ITTLGRGGSD +A + ALG +++ DVDGV T D
Sbjct: 122 LLEEGDVVIVAGFQGIN-EDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTAD 180
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
P I P A+ + +++DE E+A GA+VLHP+S+ A++ +P+RV +S++ PGTLI
Sbjct: 181 PRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE-PGTLI 238
|
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239 |
| >gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
|---|
Score = 202 bits (517), Expect = 6e-61
Identities = 98/298 (32%), Positives = 148/298 (49%), Gaps = 19/298 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK------LLLAGEKAVSC 137
V+KFGGSSLASAE+ ++V ++ + P R ++V+SA GK LL+ +AV
Sbjct: 3 VVKFGGSSLASAEQFQKVKAIVKADPE-RKIVVVSAPGKRFKDDTKVTDLLILYAEAV-- 59
Query: 138 GVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
+ + D + DELG+ SI+ E LE L D L
Sbjct: 60 -LAGEDTESIFEAIVDRYAEIADELGLPMSILEEIAEILENLANL---DYANPDYLLDAL 115
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
+ GE ++ ++ AAYLN G+ AR D G + TD+ NA IL +Y + K
Sbjct: 116 KARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKK-----L 170
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
++ GF G + + I T RGGSD+T + + + + DVDG+ +P
Sbjct: 171 RDSDEKLVIPGFYGYS-KNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANP 229
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
I + KP+ +T+ E EL+Y G V H +++ PA E IP+ +KN+ +P APGTLI
Sbjct: 230 RIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLI 287
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. Length = 288 |
| >gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 4e-60
Identities = 99/302 (32%), Positives = 134/302 (44%), Gaps = 64/302 (21%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V+KFGGSS++S ER+R +A +++ +E R V+V A + T++LL GE
Sbjct: 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL------- 53
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
G A +T R D L + G
Sbjct: 54 ----------------------------------------GYARGLRITDRETDALAAMG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E MS + AA L + G+KA D GF + + I RL
Sbjct: 74 EGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKI----TKVSTDRLKSLLENG- 128
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
+PI++GF G + TLGRGGSD TA + AL + + DVDGV T DP P
Sbjct: 129 ILPILSGFGGTDEK--ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVP 186
Query: 322 HAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN--------PNAPGT 373
AK + LT++EAAELAY GA VL P++ PA IPVR+ N+ N P+ GT
Sbjct: 187 DAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGALALFTPDGGGT 246
Query: 374 LI 375
LI
Sbjct: 247 LI 248
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248 |
| >gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 9e-54
Identities = 86/294 (29%), Positives = 150/294 (51%), Gaps = 55/294 (18%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+++ ER +VA+ + +E +PV+V+SAMG
Sbjct: 3 VQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMG-------------------- 42
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
R D D L L+ +++PR D L+S G
Sbjct: 43 ---------------RKGDPYATD---------TLINLVYAEN--SDISPRELDLLMSCG 76
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E +S + + L G+KA G +T D+++NA I++ V + + +
Sbjct: 77 EIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIK-----VNPKKILSALKEG 131
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
+ +V GF G +TTLGRGGSD TA +G AL + ++++ DVDG++T DP + P
Sbjct: 132 DVVVVAGFQG-VTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVP 190
Query: 322 HAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
+A+ + ++++E ++A+ GA+V+HP+++ A + +IP+R++++ + N PGTLI
Sbjct: 191 NARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN-PGTLI 243
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244 |
| >gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 2e-48
Identities = 97/301 (32%), Positives = 158/301 (52%), Gaps = 18/301 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V+KFGG+S++S R +A+L N +P+IV SA+ +NKL ++A+ +
Sbjct: 3 VLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHS 62
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRS-IIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
+ ++ H ++L +D ++A L +L++ L GI++LK+ +PR+R +++
Sbjct: 63 -----LFNAIQSRHLNLAEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLAL 117
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD--WI 258
GE MSTR+ AAYL G+K + DA ++ T A + + D
Sbjct: 118 GELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGGET--MNYLSARCESEYADALLQ 174
Query: 259 TDLA----IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
LA + I GF+ + LGRGGSD +A L ++W DV G+ T
Sbjct: 175 KRLADGAQLIITQGFIARNAHG-ETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFT 233
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTL 374
+P+ PHA+ + L +DEA E+A GA+VLHP+ + PAR +IP+ V+++ P GTL
Sbjct: 234 ANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTL 293
Query: 375 I 375
I
Sbjct: 294 I 294
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 295 |
| >gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 7e-45
Identities = 129/484 (26%), Positives = 214/484 (44%), Gaps = 108/484 (22%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ S ER++ VA+ I V+V+SAMGKTT
Sbjct: 5 VQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTT----------------- 47
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
+EL +L K I+ R D L+S G
Sbjct: 48 --------------------------------DELVKLAKEIS--SNPPRREMDMLLSTG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E +S + + L+++G A +G +T + A ILE + + L +
Sbjct: 74 EQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVV-- 131
Query: 262 AIPIVTGFLG-KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
+V GF G ITTLGRGGSD +A + ALG +++ DV GVLT DP +
Sbjct: 132 ---VVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLV 188
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI--RRS 378
P A+ + ++ DE ELA GA VLHP+++ AR +P+ V++S++ +APGTL+
Sbjct: 189 PEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS-DAPGTLVTSPPP 247
Query: 379 RDMSKAVLTSIVLKRNVTMLDIVSTR----MLG---QYGFLAKVFSTFEDLGISVDV--- 428
R S L + L + V +++ + +L + G A++F G++VD+
Sbjct: 248 RPRS---LGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQ 304
Query: 429 -------------VATSEVSLSLTLDPSKLWSRELIQQASELDHVVEE-LEKIAIVNLLQ 474
VA +E+ + + + + + +VE + K++I
Sbjct: 305 SIHEGNSNDIAFTVAENELKKAEAV------AEAIAPALGGAEVLVETNVAKLSISGA-- 356
Query: 475 HRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRAL 534
G + R I K F L +G+N++MIS S+V +S +++ ++ ++ +RA+
Sbjct: 357 --------GMMGRPG-IAAKMFDTLAEAGINIRMIS--TSEVKVSCVIDAEDGDKALRAV 405
Query: 535 HETF 538
E F
Sbjct: 406 CEAF 409
|
Length = 587 |
| >gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 4e-41
Identities = 104/326 (31%), Positives = 159/326 (48%), Gaps = 32/326 (9%)
Query: 86 KFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCI 145
KFGGSSLA A+ R VA ++ + ++V+SA GKTTN+L+ + + + ++
Sbjct: 16 KFGGSSLADAKCYRRVAGILAEYSQPDDLVVVSAAGKTTNQLISWLKLSQTDRLSAHQVQ 75
Query: 146 DEL-SFVKDLHHRTVDEL---GIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
L + +DL ++ L RS+++ + +LE+L + + +V G
Sbjct: 76 QTLRRYQQDL----IEGLLPAEQARSLLSRLISDLERLAALLD--GGINDAQYAEVVGHG 129
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEA-TYPAVAKRL--HGDWI 258
E S R+ AA LN+ G+ A DA F+ + + E +YP + + L H
Sbjct: 130 EVWSARLMAALLNQQGLPAAWLDARS--FLRAERAAQPQVDEGLSYPLLQQLLAQHPGKR 187
Query: 259 TDLAIPIVTGFLGK--AWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
+VTGF+ + A T LGR GSD +AT IG G++ + +W DV GV + D
Sbjct: 188 L-----VVTGFISRNEAGETV---LLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSAD 239
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
P A +P L DEA+ELA A VLH ++++P DI ++++ SY P T I
Sbjct: 240 PRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIE 299
Query: 377 RSRDMSKAVLTSIVLKRNVTMLDIVS 402
R VL S R VT LD V
Sbjct: 300 R-------VLASGTGARIVTSLDDVC 318
|
Length = 810 |
| >gnl|CDD|153205 cd04933, ACT_AK1-AT_1, ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 4e-41
Identities = 71/80 (88%), Positives = 73/80 (91%), Gaps = 2/80 (2%)
Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQA 454
VTMLDI STRMLGQYGFLAKVFS FE LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ
Sbjct: 1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATSEVSISLTLDPSKLWSRELIQQ- 59
Query: 455 SELDHVVEELEKIAIVNLLQ 474
ELDHVVEELEK A+VNLL
Sbjct: 60 -ELDHVVEELEKDAVVNLLV 78
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 78 |
| >gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 6e-41
Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 30/282 (10%)
Query: 84 VMKFGGSSLASAERMREVAELILS-FPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V+KFGGSS+ E EL+ V+V+SA+ T+KLL E + I
Sbjct: 7 VVKFGGSSVRYD--FEEALELVKYLSEENEVVVVVSALKGVTDKLLKLAETFDKEALEEI 64
Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRS-RDYLVSFG 201
++H LGID I++ +L++L +L + RDY++SFG
Sbjct: 65 E---------EIHEEFAKRLGIDLEILSPYLKKL------FNSRPDLPSEALRDYILSFG 109
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI-LEATYPAVAKRLHGDWITD 260
E +S +FA L G+K + D ++I F NA I ++ + V K L + +
Sbjct: 110 ERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNAFIDIKKSKRNV-KIL-YELLER 166
Query: 261 LAIPIVTGFLG--KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
+P+V GF+G +R TLGRGGSD +A +G L + + + DV+G+ T DP
Sbjct: 167 GRVPVVPGFIGNLNGFRA----TLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPK 222
Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 360
+ P A+ +PYL++DEA A G + LH +++ P +G IP+
Sbjct: 223 LVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPV-KGKIPI 263
|
Length = 341 |
| >gnl|CDD|239780 cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 1e-40
Identities = 97/308 (31%), Positives = 155/308 (50%), Gaps = 24/308 (7%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE-RPVIVLSAMGK------TTNKLLLAGEKAVS 136
V KFGG+S+ +++ ++ + +V SA TTN+LL A ++A+
Sbjct: 4 VQKFGGTSVGKFP-DNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALD 62
Query: 137 CGVTNISCIDELSFVKDLHHRTVDELGIDRSI-------IATHLEELEQLLKGIAMLKEL 189
I E ++ H + + + I E L + L+ +L E+
Sbjct: 63 AQEKAFHDIVED--IRSDHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEI 120
Query: 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAV 249
+PR++D ++S GE +S R AA L GV A D+ I DF+ + + Y +
Sbjct: 121 SPRTKDLVISTGEKLSCRFMAAVLRDRGVDAE---YVDLSHIVDLDFSIEALDQTFYDEL 177
Query: 250 AKRLHGDWITDLA--IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307
A+ L G+ IT +P+VTGF G ++ +GRG +DL A L E+Q+WK
Sbjct: 178 AQVL-GEKITACENRVPVVTGFFGNV-PGGLLSQIGRGYTDLCAALCAVGLNADELQIWK 235
Query: 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN 367
+VDG+ T DP P A+ +P +T +EAAEL Y+G++V+HP +M + IP+R+KN N
Sbjct: 236 EVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVEN 295
Query: 368 PNAPGTLI 375
P GT+I
Sbjct: 296 PRGEGTVI 303
|
Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Length = 306 |
| >gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 1e-40
Identities = 126/464 (27%), Positives = 210/464 (45%), Gaps = 101/464 (21%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ S ER++ VAE I+ N+ + V+V+SAM TN+LL
Sbjct: 5 VQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLL------------- 51
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
L + VD + T R D L+S G
Sbjct: 52 -----------GLAKQ-VDSVP--------------------------TARELDVLLSAG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E +S + A LNK+G AR +T + +A I K + IT+L
Sbjct: 74 EQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATI---------KHIDTSTITEL 124
Query: 262 A----IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
I IV GF G+ ITTLGRGGSD TA + AL E Q++ DVDGV TCDP
Sbjct: 125 LEQDQIVIVAGFQGRN-ENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
+ +A+ + + F +A GA+VLH S++ A + +P+RV +S+ GTLI+
Sbjct: 184 RVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVGE-GTLIKG 242
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISV-DVVATSEVSL 436
+ I L+R++ ++++ S L + + LGI V +V+ ++
Sbjct: 243 EAGTQA--VCGIALQRDLALIEVESES-------LPSLTKQCQMLGIEVWNVIEEAD--- 290
Query: 437 SLTLDPSKLWSRELIQQAS--ELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEK 494
++ +I+Q + +L V + +KI + S+++L+G ++ ++E
Sbjct: 291 ---------RAQIVIKQDACAKLKLVFD--DKIRNSESV---SLLTLVGL--EANGMVEH 334
Query: 495 AFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538
A +L ++G++V+ S L+++ ++ LH+T+
Sbjct: 335 ACNLLAQNGIDVRQCSTEPQSS--MLVLDPANVDRAANILHKTY 376
|
Length = 392 |
| >gnl|CDD|235646 PRK05925, PRK05925, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 3e-40
Identities = 127/463 (27%), Positives = 213/463 (46%), Gaps = 41/463 (8%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERP-VIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V KFGG+SL +AE +R V ++I E+P +V+SA+ T+ L C ++
Sbjct: 5 VYKFGGTSLGTAESIRRVCDIICK---EKPSFVVVSAVAGVTDLLEEF------CRLSKG 55
Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGE 202
+++ H ELGI+ S+ + E LE ++E++ + +++ GE
Sbjct: 56 KREALTEKIREKHEEIAKELGIEFSL-SPWWERLEHFED----VEEISSEDQARILAIGE 110
Query: 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW----I 258
+S + AY + +A + I TDD L A P +A + W +
Sbjct: 111 DISASLICAYCCTYVLPLEFLEARQV--ILTDD----QYLRAV-PDLA-LMQTAWHELAL 162
Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
+ AI I+ GF+G A + T LGRGGSD +A+ I + +E++++ DV+G+ T DP
Sbjct: 163 QEDAIYIMQGFIG-ANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPK 221
Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
I A+ +P L+F+E LA FGA+VLHP ++P IP+ V ++++ GT I S
Sbjct: 222 IIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYAS 281
Query: 379 RDMS--KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSL 436
+ + ++ LK+N L V LG L V LGI +V + +
Sbjct: 282 DKEVSYEPRIKALSLKQN-QALWSVDYNSLGLVR-LEDVLGILRSLGIVPGLVMAQNLGV 339
Query: 437 SLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAF 496
T+D + E Q H+ + L V+ ++I++IG S ++
Sbjct: 340 YFTIDDDDISE-EYPQ------HLTDALSAFGTVSCEGPLALITMIGAKLASWKVVRTFT 392
Query: 497 RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539
LR V Q S + ++L+VN++ A LH +
Sbjct: 393 EKLRGYQTPVFCWCQ--SDMALNLVVNEELAVAVTELLHNDYV 433
|
Length = 440 |
| >gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-38
Identities = 84/289 (29%), Positives = 120/289 (41%), Gaps = 66/289 (22%)
Query: 82 TCVMKFGGSSLASAERMREVAELILSFPNE-RPVIVLSAMGKTTNKLLLAGEKAVSCGVT 140
V+K GGSSL + ++ +AE I V+V+S G T+KLL A
Sbjct: 2 RIVIKLGGSSLTDKDEIKRLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYGIEAG---- 57
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
H L ++ + A +VS
Sbjct: 58 -----------FVRHTAGATGLVLEAQLAAELN---------------------RIVVSL 85
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE + R A L+ G+ A + D D I ++LEA
Sbjct: 86 GERLGARAVALLLSDGGLPAVRLDLVDTEAI-------KELLEAGV-------------- 124
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
+P++TGF G+ T TTLGRG SD A + +ALG ++ + DVDGV T DP +
Sbjct: 125 --VPVITGFGGEN-DTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKN 181
Query: 321 PHAKPVPYLTFDEAAELA-----YFGAQVLHPQSMRPAREGDIPVRVKN 364
P AK +P L++DEA EL G +V HP +++ AR G IPV + N
Sbjct: 182 PDAKLIPELSYDEAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230
|
This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230 |
| >gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 5e-34
Identities = 90/281 (32%), Positives = 139/281 (49%), Gaps = 33/281 (11%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVL-SAMGKTTNKLLLAGEKAVSCGVTNI 142
V+KFGGSS+ A E EL+ S E+ VIV+ SA+ T+ L+ I
Sbjct: 3 VVKFGGSSVRYA--FEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTFDKSAALEI 60
Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRS-RDYLVSFG 201
+++ ELG+D +I++ +L+EL +L + RDY++S G
Sbjct: 61 E---------EIYEEFAKELGVDLNILSPYLKELFNP-------PDLPKEALRDYILSLG 104
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA--DILEATYPAVAKRLHGDWIT 259
E +S IFA G+ + D +DI F DF NA DI ++ A K L+ + +
Sbjct: 105 ERLSAVIFAE-----GINGKVVDPWDI-FFAKGDFGNAFIDIKKSKRNA--KILY-EVLE 155
Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
IP++ GF G TLGRGGSD +A +G L + + + DV+G+ T DP +
Sbjct: 156 SGKIPVIPGFYGN--LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKL 213
Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 360
P A+ +PYL+++E A G + L ++ A+E IPV
Sbjct: 214 VPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPV 254
|
This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between [Amino acid biosynthesis, Aspartate family]. Length = 327 |
| >gnl|CDD|153190 cd04918, ACT_AK1-AT_2, ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-32
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 476 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
RSIISLIGNVQRSSLILE+AF VL GVNVQMISQGASKVNISLIVND EAE CV+ALH
Sbjct: 1 RSIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALH 60
Query: 536 ETFFE 540
++FFE
Sbjct: 61 KSFFE 65
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 65 |
| >gnl|CDD|153184 cd04912, ACT_AKiii-LysC-EC-like_1, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-26
Identities = 40/80 (50%), Positives = 57/80 (71%), Gaps = 5/80 (6%)
Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQA 454
+T+L+I S RMLG +GFLAKVF F G+SVD+++TSEVS+SLTLDP+K S +L
Sbjct: 1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSEVSVSLTLDPTKNLSDQL---- 56
Query: 455 SELDHVVEELEKIAIVNLLQ 474
LD +V++L +I V + +
Sbjct: 57 -LLDALVKDLSQIGDVEVEE 75
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75 |
| >gnl|CDD|236396 PRK09181, PRK09181, aspartate kinase; Validated | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-26
Identities = 124/496 (25%), Positives = 210/496 (42%), Gaps = 70/496 (14%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPN--ERP---VIVLSAMGKTTNKLLLAGEKAVSCG 138
V K GG+S++ V + I+ P E + V+SA G T+ LL +K G
Sbjct: 6 VEKIGGTSMS---AFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTD-ALLEHKKTGEPG 61
Query: 139 V-------TNISCIDELSFVKD---LHHRTVDELGIDRS----IIATHLEELEQLLKGIA 184
V + + + L V+ + + G+D + I +EE L +
Sbjct: 62 VYALFAKANDEAWREALEAVEQRMLAINAELFADGLDLARADKFIRERIEEARACLIDLQ 121
Query: 185 --------MLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236
L E R+ L S GE S A L GV AR D G+ D
Sbjct: 122 RLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDL--TGWDDDDPL 179
Query: 237 TNADILEATYPAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCA---ITTLGRGGSDLTA 291
T + ++ + + D+ +PIVTG+ C + T RG S++T
Sbjct: 180 TLDERIKKAFKDI----------DVTKELPIVTGYAK-----CKEGLMRTFDRGYSEMTF 224
Query: 292 TTIGKALGLQEIQVWKDVDGVLTCDPNI--HPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349
+ I G E + K+ + + DP + P+ +D A +LA G + +HP++
Sbjct: 225 SRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKA 283
Query: 350 MRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQY 409
+ R+ IP+R+KN++ P PGTLI + + + I V L++ M+G+
Sbjct: 284 AKGLRQAGIPLRIKNTFEPEHPGTLITKDYVSEQPRVEIIAGSDKVFALEVFDQDMVGED 343
Query: 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKI-- 467
G+ ++ +S AT+ +++ L S L V+ ELEK
Sbjct: 344 GYDLEILEILTRHKVSYISKATNANTITHYLWGS----------LKTLKRVIAELEKRYP 393
Query: 468 -AIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDE 526
A V ++ +I+S IG+ +L KA + L +G+NV + Q +VN+ +V++D+
Sbjct: 394 NAEVT-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDD 452
Query: 527 AEQCVRALHETFFESD 542
E+ + ALHE E+
Sbjct: 453 YEKAICALHEALVENH 468
|
Length = 475 |
| >gnl|CDD|153164 cd04892, ACT_AK-like_2, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 9e-19
Identities = 27/65 (41%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 477 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
+++S++G R + + + F L +G+N+ MISQG+S+VNIS +V++D+A++ V+ALH
Sbjct: 1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALH 60
Query: 536 ETFFE 540
E FF
Sbjct: 61 EEFFL 65
|
This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different AK isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are AKs with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 65 |
| >gnl|CDD|239781 cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 9e-17
Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 53/323 (16%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNER---PVIVLSAMGKTTNKLLLAGEKAVSCGV- 139
V K GG+S+++ V + I+ P+ V V+SA TN LL +K + G+
Sbjct: 3 VEKIGGTSMSAFG---AVLDNIILKPDSDLYGRVFVVSAYSGVTN-ALLEHKKTGAPGIY 58
Query: 140 -----TNISCIDELSFVKD-LH--HRTVDELGIDR----SIIATHLEELEQLLKGIAM-- 185
+ + + LS +K + + ++G+D + I +++ L +A
Sbjct: 59 QHFVDADEAWREALSALKQAMLKINEAFADIGLDVEQADAFIGARIQDARACLHDLARLC 118
Query: 186 ------LKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239
L E +R+ L S GE S A L GV AR D G+ + D T
Sbjct: 119 SSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDL--SGWRDSGDMTLD 176
Query: 240 DILEATYPAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCA---ITTLGRGGSDLTATTI 294
+ + + + D +PIVTG+ CA + RG S++T + I
Sbjct: 177 ERISEAFRDI----------DPRDELPIVTGYAK-----CAEGLMREFDRGYSEMTFSRI 221
Query: 295 GKALGLQEIQVWKDVDGVLTCDPNI--HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRP 352
G E + K+ + + DP + A+P+ +D A +LA G + +HP++ +
Sbjct: 222 AVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKG 280
Query: 353 AREGDIPVRVKNSYNPNAPGTLI 375
R+ IP+RVKN++ P+ PGTLI
Sbjct: 281 LRQAGIPLRVKNTFEPDHPGTLI 303
|
Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. Length = 304 |
| >gnl|CDD|153162 cd04890, ACT_AK-like_1, ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-15
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQAS 455
T ++I M G+ GFL K+F E GISVD++ TSE S++L LD S L
Sbjct: 1 TAIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPTSENSVTLYLDDSLL--------PK 52
Query: 456 ELDHVVEELE 465
+L ++ ELE
Sbjct: 53 KLKRLLAELE 62
|
This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 62 |
| >gnl|CDD|153204 cd04932, ACT_AKiii-LysC-EC_1, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-13
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQAS 455
T++ + S ML GFLAKVF ISVD++ TSE+S++LTLD + S +L+ QA
Sbjct: 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTSEISVALTLDNTGSTSDQLLTQA- 60
Query: 456 ELDHVVEELEKIAIVNL 472
+++EL +I V +
Sbjct: 61 ----LLKELSQICDVKV 73
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75 |
| >gnl|CDD|153140 cd04868, ACT_AK-like, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 2e-12
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 477 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
+ +S++G R + + K F L +G+NV MISQ S+VNIS V++ + E+ V+ALH
Sbjct: 1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH 60
|
This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are aspartokinases with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this AK family CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 60 |
| >gnl|CDD|153189 cd04917, ACT_AKiii-LysC-EC_2, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-12
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 477 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
++++LIGN + ++ + ++ F L +NV+MI GAS N+ +V +++ ++ V+ LH
Sbjct: 2 ALVALIGNDISETAGVEKRIFDALE--DINVRMICYGASNHNLCFLVKEEDKDEVVQRLH 59
Query: 536 ETFFE 540
FE
Sbjct: 60 SRLFE 64
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 64 |
| >gnl|CDD|153196 cd04924, ACT_AK-Arch_2, ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2) | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-10
Identities = 22/62 (35%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 478 IISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 536
+++++G+ R + + + F L ++G+NV MISQG+S+ NIS +V +D+ V+A+H+
Sbjct: 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHD 62
Query: 537 TF 538
F
Sbjct: 63 EF 64
|
Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66 |
| >gnl|CDD|153188 cd04916, ACT_AKiii-YclM-BS_2, ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-10
Identities = 19/65 (29%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 477 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
++I ++G ++++ + +A L ++G+N++MI+QG+S+++I + V++++A++ V+A++
Sbjct: 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIY 61
Query: 536 ETFFE 540
E FF
Sbjct: 62 EEFFN 66
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66 |
| >gnl|CDD|153208 cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 4e-09
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 479 ISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 537
+S++G RS + K F L +G+N++MIS S++ IS ++++D+AE+ VRALHE
Sbjct: 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS--TSEIKISCLIDEDDAEKAVRALHEA 60
Query: 538 F 538
F
Sbjct: 61 F 61
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the AKs of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single AKs found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis strain 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans AKs are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the second ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the second ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria AKs are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the second and fourth cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63 |
| >gnl|CDD|153191 cd04919, ACT_AK-Hom3_2, ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3 | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-09
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 477 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
+I+SL+G ++ + I + F L +N++MISQGAS++NIS ++++ +A + + +H
Sbjct: 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIH 61
Query: 536 ETFFE 540
E
Sbjct: 62 TNLLE 66
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66 |
| >gnl|CDD|153194 cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-09
Identities = 23/65 (35%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 477 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
SI++L+G+ + + F L ++ VN++ I+QG+S+ NIS ++++D+A + +RA+H
Sbjct: 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVH 61
Query: 536 ETFFE 540
E FF
Sbjct: 62 ERFFL 66
|
This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66 |
| >gnl|CDD|153195 cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 9e-09
Identities = 26/61 (42%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Query: 479 ISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 537
+S++G RS + K F+ L +G+N++MIS S++ IS +V++D+AE+ VRALHE
Sbjct: 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS--TSEIKISCLVDEDDAEKAVRALHEA 60
Query: 538 F 538
F
Sbjct: 61 F 61
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63 |
| >gnl|CDD|153193 cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-08
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 496 FRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538
F L R+G+NV +ISQ +S+ +IS +V++ +A++ + AL E F
Sbjct: 22 FSALARAGINVILISQASSEHSISFVVDESDADKALEALEEEF 64
|
This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Also included in this CD is the first of two ACT domains of a tetrameric, monofunctional, threonine-sensitive, AK found in Methanococcus jannaschii and other related archaeal species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 80 |
| >gnl|CDD|153207 cd04935, ACT_AKiii-DAPDC_1, ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-08
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQA 454
+ ++ + + M Q GFLA VF+ F+ G+SVD+V+TSE +++++LDP
Sbjct: 1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTSETNVTVSLDPD-----PNGLDP 55
Query: 455 SELDHVVEELEKIAIVNLL 473
LD ++++L +I V ++
Sbjct: 56 DVLDALLDDLNQICRVKII 74
|
This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75 |
| >gnl|CDD|153140 cd04868, ACT_AK-like, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 7e-08
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSKL 445
+ IV M G G AK+FS + GI+VD+++ S EV++S T+D S L
Sbjct: 1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDL 52
|
This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are aspartokinases with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this AK family CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 60 |
| >gnl|CDD|153187 cd04915, ACT_AK-Ectoine_2, ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-07
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 536
+I+S+IG + +L + L +G+ Q V++ +V+ D+ + ++ALH
Sbjct: 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHA 62
Query: 537 TFFE 540
E
Sbjct: 63 ALVE 66
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66 |
| >gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSR 448
++++ NV L I M+G+ G AK+F T + GI++ +++TSEV +S +D ++ +
Sbjct: 342 VLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVID-AEDGDK 400
Query: 449 ---------ELIQQASELDHVVEELEKIAI--VNLLQHRSIISLIGNVQRSSLILEKAFR 497
EL E++ ++ + V L ++++ +++ NV + F
Sbjct: 401 ALRAVCEAFELEDSQIEINPTASGQDEPEVRGVALDRNQAQLAIR-NVPDRPGMAASIFG 459
Query: 498 VLRRSGVNVQMI--SQGASKV---NISLIVNDDEAEQCVRALHE 536
L + ++V MI SQ +IS V ++ E + L E
Sbjct: 460 ALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRE 503
|
Length = 587 |
| >gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
VDGV DP +P+AK +LT+DE G +V+ + R+ ++P+ V +
Sbjct: 156 TKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GLKVMDATAFTLCRDNNLPIVV---F 209
Query: 367 NPNAPGTLIR 376
N N PG L++
Sbjct: 210 NINEPGNLLK 219
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231 |
| >gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 8e-06
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
+VDGV DP +P AK +++DE + G +V+ ++ R IP+ V +
Sbjct: 154 TNVDGVYDADPKKNPDAKKYDRISYDELLKK---GLKVMDATALTLCRRNKIPIIV---F 207
Query: 367 NPNAPGTLIR 376
N PG L+R
Sbjct: 208 NGLKPGNLLR 217
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229 |
| >gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 20/87 (22%), Positives = 47/87 (54%)
Query: 462 EELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLI 521
E + ++L ++++ +++ G + L + F L +G+NV +I+Q +S+ +IS
Sbjct: 288 MEEPIVKGLSLDRNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSISFT 347
Query: 522 VNDDEAEQCVRALHETFFESDLANLDC 548
V+ ++A+Q L S L++++
Sbjct: 348 VDKEDADQAKTLLKSELNLSALSSVEV 374
|
Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441 |
| >gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
VDGV DP P AK LT+DE ++ +V+ P + AR+ IP+ V +
Sbjct: 162 NKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGL---KVMDPTAFSLARDNGIPIIV---F 215
Query: 367 NPNAPGTLIR 376
N N PG L R
Sbjct: 216 NINKPGNLKR 225
|
Length = 238 |
| >gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 4e-05
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
+VDGV DP P AK LT+DE E +V+ ++ AR+ IP+ V +
Sbjct: 156 TNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL---KVMDATAISLARDNKIPIIV---F 209
Query: 367 NPNAPGTLIR 376
N N PG L R
Sbjct: 210 NMNKPGNLKR 219
|
Length = 231 |
| >gnl|CDD|153206 cd04934, ACT_AK-Hom3_1, CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 5e-05
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQA 454
+ +++I S + +GFLA++F+ + +SVD+++TSEV +S+ L +
Sbjct: 1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLISTSEVHVSMAL-------HMENAED 53
Query: 455 SELDHVVEELEKIAIVNLL 473
+ LD V++L+K+ V++L
Sbjct: 54 TNLDAAVKDLQKLGTVDIL 72
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73 |
| >gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
+VDGV T DP + AK +T++EA + +V+ + AR+ ++P+ V +
Sbjct: 157 TNVDGVYTADPKKNKDAKKYDTITYNEALKK---NLKVMDLTAFALARDNNLPIVV---F 210
Query: 367 NPNAPGTLIR 376
N + PG L +
Sbjct: 211 NIDKPGALKK 220
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232 |
| >gnl|CDD|153192 cd04920, ACT_AKiii-DAPDC_2, ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 1e-04
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 477 SIISLIGNVQRSSLI-LEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
+ +SL+G RS L L A V + V ++SQ A+ +N++ +V++D+A+ LH
Sbjct: 1 AAVSLVGRGIRSLLHKLGPALEVFGKK--PVHLVSQAANDLNLTFVVDEDQADGLCARLH 58
Query: 536 ETFFE 540
E
Sbjct: 59 FQLIE 63
|
This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63 |
| >gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVV--EELEKI 467
G A +F + ISVD++ S+ D ++ S + ++ E V E +++
Sbjct: 452 GMAASIFGALAEANISVDMIVQSQ---RCRSDGTRDISFTVPKEDREAAQKVLRELAKQL 508
Query: 468 AIVNLLQHRSI--ISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVND 524
+ +I +S++G + + + FR L +G+N++MI+ S++ S +V +
Sbjct: 509 PGAEVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--TSEIRTSCVVAE 566
Query: 525 DEAEQCVRALHETF 538
D+ + ++A+H+ F
Sbjct: 567 DDGVKALQAVHQAF 580
|
Length = 587 |
| >gnl|CDD|153195 cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 3e-04
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 400 IVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
IV M G AK+F + GI++++++TSE+ +S
Sbjct: 5 IVGAGMRSHPGVAAKMFKALAEAGINIEMISTSEIKIS 42
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63 |
| >gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 479 ISLIGNVQRSSL----------ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE 528
I+L NV R ++ L + F L +NV +ISQ S+ +ISL V++ +A+
Sbjct: 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLTVDETDAD 313
Query: 529 QCVRALHETFFESDLANLD 547
+ VRAL + + L ++
Sbjct: 314 EAVRALKDQSGAAGLDRVE 332
|
This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401 |
| >gnl|CDD|153208 cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 9e-04
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 400 IVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLD 441
IV M G AK+F + GI++++++TSE+ +S +D
Sbjct: 5 IVGAGMRSHPGVAAKMFEALAEAGINIEMISTSEIKISCLID 46
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the AKs of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single AKs found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis strain 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans AKs are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the second ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the second ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria AKs are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the second and fourth cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 559 | |||
| KOG0456 | 559 | consensus Aspartate kinase [Amino acid transport a | 100.0 | |
| PLN02551 | 521 | aspartokinase | 100.0 | |
| COG0527 | 447 | LysC Aspartokinases [Amino acid transport and meta | 100.0 | |
| PRK09084 | 448 | aspartate kinase III; Validated | 100.0 | |
| PRK09034 | 454 | aspartate kinase; Reviewed | 100.0 | |
| PRK06291 | 465 | aspartate kinase; Provisional | 100.0 | |
| PRK09181 | 475 | aspartate kinase; Validated | 100.0 | |
| PRK05925 | 440 | aspartate kinase; Provisional | 100.0 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 100.0 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 100.0 | |
| PRK08961 | 861 | bifunctional aspartate kinase/diaminopimelate deca | 100.0 | |
| TIGR00657 | 441 | asp_kinases aspartate kinase. The Lys-sensitive en | 100.0 | |
| PRK08841 | 392 | aspartate kinase; Validated | 100.0 | |
| TIGR00656 | 401 | asp_kin_monofn aspartate kinase, monofunctional cl | 100.0 | |
| PRK08210 | 403 | aspartate kinase I; Reviewed | 100.0 | |
| PRK07431 | 587 | aspartate kinase; Provisional | 100.0 | |
| PRK06635 | 404 | aspartate kinase; Reviewed | 100.0 | |
| cd04245 | 288 | AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki | 100.0 | |
| cd04258 | 292 | AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki | 100.0 | |
| cd04244 | 298 | AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina | 100.0 | |
| cd04257 | 294 | AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa | 100.0 | |
| cd04243 | 293 | AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina | 100.0 | |
| cd04259 | 295 | AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super | 100.0 | |
| cd04247 | 306 | AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa | 100.0 | |
| PRK08373 | 341 | aspartate kinase; Validated | 100.0 | |
| TIGR02078 | 327 | AspKin_pair Pyrococcus aspartate kinase subunit, p | 100.0 | |
| cd04248 | 304 | AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S | 100.0 | |
| cd04261 | 239 | AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina | 100.0 | |
| cd04234 | 227 | AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK) | 100.0 | |
| cd04246 | 239 | AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina | 100.0 | |
| cd04260 | 244 | AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase | 100.0 | |
| cd02115 | 248 | AAK Amino Acid Kinases (AAK) superfamily, catalyti | 100.0 | |
| PRK12314 | 266 | gamma-glutamyl kinase; Provisional | 100.0 | |
| PF00696 | 242 | AA_kinase: Amino acid kinase family Match to Gluta | 99.98 | |
| cd04242 | 251 | AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K | 99.97 | |
| PRK00358 | 231 | pyrH uridylate kinase; Provisional | 99.97 | |
| PRK14557 | 247 | pyrH uridylate kinase; Provisional | 99.97 | |
| cd04239 | 229 | AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik | 99.97 | |
| PRK14558 | 231 | pyrH uridylate kinase; Provisional | 99.96 | |
| cd04254 | 231 | AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi | 99.96 | |
| TIGR02075 | 233 | pyrH_bact uridylate kinase. This protein, also cal | 99.96 | |
| PRK13402 | 368 | gamma-glutamyl kinase; Provisional | 99.96 | |
| cd04253 | 221 | AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP | 99.95 | |
| cd04249 | 252 | AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina | 99.94 | |
| TIGR02076 | 221 | pyrH_arch uridylate kinase, putative. This family | 99.94 | |
| cd04250 | 279 | AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase | 99.94 | |
| PRK05429 | 372 | gamma-glutamyl kinase; Provisional | 99.94 | |
| PRK00942 | 283 | acetylglutamate kinase; Provisional | 99.94 | |
| TIGR00761 | 231 | argB acetylglutamate kinase. This model describes | 99.94 | |
| TIGR01027 | 363 | proB glutamate 5-kinase. Bacterial ProB proteins h | 99.93 | |
| PLN02418 | 718 | delta-1-pyrroline-5-carboxylate synthase | 99.93 | |
| cd04238 | 256 | AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate | 99.93 | |
| PRK14058 | 268 | acetylglutamate/acetylaminoadipate kinase; Provisi | 99.92 | |
| PRK14556 | 249 | pyrH uridylate kinase; Provisional | 99.91 | |
| cd04241 | 252 | AAK_FomA-like AAK_FomA-like: This CD includes a fo | 99.9 | |
| PLN02512 | 309 | acetylglutamate kinase | 99.9 | |
| COG0528 | 238 | PyrH Uridylate kinase [Nucleotide transport and me | 99.9 | |
| COG0548 | 265 | ArgB Acetylglutamate kinase [Amino acid transport | 99.89 | |
| CHL00202 | 284 | argB acetylglutamate kinase; Provisional | 99.88 | |
| cd04251 | 257 | AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina | 99.87 | |
| cd04255 | 262 | AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th | 99.86 | |
| cd04256 | 284 | AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase | 99.85 | |
| TIGR01092 | 715 | P5CS delta l-pyrroline-5-carboxylate synthetase. T | 99.84 | |
| COG0263 | 369 | ProB Glutamate 5-kinase [Amino acid transport and | 99.83 | |
| PTZ00489 | 264 | glutamate 5-kinase; Provisional | 99.83 | |
| TIGR01890 | 429 | N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi | 99.75 | |
| cd04236 | 271 | AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA | 99.73 | |
| cd04237 | 280 | AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) | 99.73 | |
| PRK12353 | 314 | putative amino acid kinase; Reviewed | 99.7 | |
| PRK05279 | 441 | N-acetylglutamate synthase; Validated | 99.7 | |
| cd04252 | 248 | AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam | 99.69 | |
| PRK07431 | 587 | aspartate kinase; Provisional | 99.68 | |
| PLN02825 | 515 | amino-acid N-acetyltransferase | 99.66 | |
| PRK12352 | 316 | putative carbamate kinase; Reviewed | 99.64 | |
| cd04240 | 203 | AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin | 99.62 | |
| TIGR00746 | 310 | arcC carbamate kinase. The seed alignment for this | 99.61 | |
| cd04235 | 308 | AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot | 99.55 | |
| PRK12686 | 312 | carbamate kinase; Reviewed | 99.5 | |
| PRK04531 | 398 | acetylglutamate kinase; Provisional | 99.44 | |
| cd04915 | 66 | ACT_AK-Ectoine_2 ACT domains located C-terminal to | 99.42 | |
| cd04918 | 65 | ACT_AK1-AT_2 ACT domains located C-terminal to the | 99.42 | |
| PRK12454 | 313 | carbamate kinase-like carbamoyl phosphate syntheta | 99.42 | |
| COG1608 | 252 | Predicted archaeal kinase [General function predic | 99.42 | |
| KOG1154 | 285 | consensus Gamma-glutamyl kinase [Amino acid transp | 99.4 | |
| PRK12354 | 307 | carbamate kinase; Reviewed | 99.37 | |
| cd04937 | 64 | ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela | 99.24 | |
| cd04920 | 63 | ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AK | 99.24 | |
| cd04917 | 64 | ACT_AKiii-LysC-EC_2 ACT domains located C-terminal | 99.23 | |
| cd04919 | 66 | ACT_AK-Hom3_2 ACT domains located C-terminal to th | 99.23 | |
| cd04922 | 66 | ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona | 99.21 | |
| PRK09411 | 297 | carbamate kinase; Reviewed | 99.21 | |
| cd04916 | 66 | ACT_AKiii-YclM-BS_2 ACT domains located C-terminal | 99.11 | |
| cd04924 | 66 | ACT_AK-Arch_2 ACT domains of a monofunctional aspa | 99.01 | |
| PF13840 | 65 | ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2 | 98.97 | |
| cd04933 | 78 | ACT_AK1-AT_1 ACT domains located C-terminal to the | 98.83 | |
| COG2054 | 212 | Uncharacterized archaeal kinase related to asparto | 98.77 | |
| cd04892 | 65 | ACT_AK-like_2 ACT domains C-terminal to the cataly | 98.73 | |
| cd04923 | 63 | ACT_AK-LysC-DapG-like_2 ACT domains of the lysine- | 98.73 | |
| cd04921 | 80 | ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc | 98.73 | |
| cd04936 | 63 | ACT_AKii-LysC-BS-like_2 ACT domains of the lysine- | 98.71 | |
| cd04932 | 75 | ACT_AKiii-LysC-EC_1 ACT domains located C-terminal | 98.71 | |
| cd04934 | 73 | ACT_AK-Hom3_1 CT domains located C-terminal to the | 98.67 | |
| cd04935 | 75 | ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK | 98.59 | |
| COG0549 | 312 | ArcC Carbamate kinase [Amino acid transport and me | 98.45 | |
| cd04868 | 60 | ACT_AK-like ACT domains C-terminal to the catalyti | 98.43 | |
| cd04912 | 75 | ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter | 98.43 | |
| TIGR00656 | 401 | asp_kin_monofn aspartate kinase, monofunctional cl | 98.39 | |
| cd04890 | 62 | ACT_AK-like_1 ACT domains found C-terminal to the | 98.33 | |
| PRK06291 | 465 | aspartate kinase; Provisional | 98.33 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 98.2 | |
| cd04937 | 64 | ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela | 98.17 | |
| cd04912 | 75 | ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter | 98.17 | |
| cd04891 | 61 | ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- | 98.03 | |
| cd04933 | 78 | ACT_AK1-AT_1 ACT domains located C-terminal to the | 98.01 | |
| PF13840 | 65 | ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2 | 98.01 | |
| cd04913 | 75 | ACT_AKii-LysC-BS-like_1 ACT domains of the lysine- | 98.01 | |
| cd04919 | 66 | ACT_AK-Hom3_2 ACT domains located C-terminal to th | 97.98 | |
| cd04922 | 66 | ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona | 97.93 | |
| cd04890 | 62 | ACT_AK-like_1 ACT domains found C-terminal to the | 97.93 | |
| cd04934 | 73 | ACT_AK-Hom3_1 CT domains located C-terminal to the | 97.91 | |
| COG0527 | 447 | LysC Aspartokinases [Amino acid transport and meta | 97.87 | |
| cd04932 | 75 | ACT_AKiii-LysC-EC_1 ACT domains located C-terminal | 97.85 | |
| PRK06635 | 404 | aspartate kinase; Reviewed | 97.82 | |
| cd04911 | 76 | ACT_AKiii-YclM-BS_1 ACT domains located C-terminal | 97.77 | |
| cd04924 | 66 | ACT_AK-Arch_2 ACT domains of a monofunctional aspa | 97.72 | |
| cd04936 | 63 | ACT_AKii-LysC-BS-like_2 ACT domains of the lysine- | 97.7 | |
| cd04923 | 63 | ACT_AK-LysC-DapG-like_2 ACT domains of the lysine- | 97.68 | |
| cd04935 | 75 | ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK | 97.66 | |
| cd04918 | 65 | ACT_AK1-AT_2 ACT domains located C-terminal to the | 97.64 | |
| cd04916 | 66 | ACT_AKiii-YclM-BS_2 ACT domains located C-terminal | 97.63 | |
| TIGR00657 | 441 | asp_kinases aspartate kinase. The Lys-sensitive en | 97.6 | |
| cd04915 | 66 | ACT_AK-Ectoine_2 ACT domains located C-terminal to | 97.59 | |
| cd04868 | 60 | ACT_AK-like ACT domains C-terminal to the catalyti | 97.53 | |
| cd04920 | 63 | ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AK | 97.41 | |
| cd04892 | 65 | ACT_AK-like_2 ACT domains C-terminal to the cataly | 97.35 | |
| cd04921 | 80 | ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc | 97.22 | |
| PLN02551 | 521 | aspartokinase | 97.22 | |
| PRK09034 | 454 | aspartate kinase; Reviewed | 97.2 | |
| PRK09181 | 475 | aspartate kinase; Validated | 97.18 | |
| cd04910 | 71 | ACT_AK-Ectoine_1 ACT domains located C-terminal to | 97.14 | |
| cd04917 | 64 | ACT_AKiii-LysC-EC_2 ACT domains located C-terminal | 97.0 | |
| cd04914 | 67 | ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela | 96.98 | |
| cd04914 | 67 | ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela | 96.95 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 96.85 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 96.84 | |
| PRK09084 | 448 | aspartate kinase III; Validated | 96.83 | |
| PRK05925 | 440 | aspartate kinase; Provisional | 96.76 | |
| KOG2436 | 520 | consensus Acetylglutamate kinase/acetylglutamate s | 96.7 | |
| PRK08210 | 403 | aspartate kinase I; Reviewed | 96.6 | |
| cd04891 | 61 | ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- | 96.48 | |
| PRK08841 | 392 | aspartate kinase; Validated | 96.35 | |
| cd04910 | 71 | ACT_AK-Ectoine_1 ACT domains located C-terminal to | 96.14 | |
| PRK08961 | 861 | bifunctional aspartate kinase/diaminopimelate deca | 96.13 | |
| COG3603 | 128 | Uncharacterized conserved protein [Function unknow | 96.07 | |
| cd04913 | 75 | ACT_AKii-LysC-BS-like_1 ACT domains of the lysine- | 95.95 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 95.76 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 94.51 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 93.83 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 93.6 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 93.51 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 92.93 | |
| cd04911 | 76 | ACT_AKiii-YclM-BS_1 ACT domains located C-terminal | 92.87 | |
| KOG0456 | 559 | consensus Aspartate kinase [Amino acid transport a | 92.21 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 91.47 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 90.75 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 89.98 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 89.67 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 89.61 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 88.46 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 87.95 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 87.56 | |
| COG4492 | 150 | PheB ACT domain-containing protein [General functi | 86.39 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 86.23 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 85.72 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 85.6 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 84.83 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 84.34 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 81.2 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 80.65 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 80.12 |
| >KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-111 Score=849.79 Aligned_cols=550 Identities=70% Similarity=0.998 Sum_probs=518.6
Q ss_pred Cccccccccccccccccc---ccccccccccccccccccceecccCCCcccceeEeeccccchhhhccccccccccCcCC
Q 008621 2 ANTMQFSSIIQKNSLHCQ---ALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESE 78 (559)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (559)
++++|++|+.+++..-.+ +..+++.+|+.-.+++.+.++ .++||++ ++|++|+..++...+++.+++....+ +
T Consensus 1 ~a~~~~~~~~~~~l~l~~~r~~~~~~~~~f~~~~~~~~~~~~--~~s~~~i-~~~~~~~~~r~~l~~~k~~e~~~s~g-~ 76 (559)
T KOG0456|consen 1 MASTQVYGVKTPRLALTSKRLEFSSKGVDFSTLKKSSLPIGR--GSSCRNI-SLRVSCEAVRVVLLERKNPETDPSNG-E 76 (559)
T ss_pred CCceeEEeecCCCcccccccccccccCccchhhccccccccC--Cccceec-eeeeeeeeeeEeeecccCcccCccCC-C
Confidence 468999999776555332 556778888887777765555 5667777 89999999999999999888865555 7
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 79 KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
+..|+|+|||||||++++++..++..+..+++++++||+|||+++|+.|+..++++..|+..+.+..++++.|++.|++.
T Consensus 77 k~~~~V~KFGGsSV~s~~~~i~v~~l~~~~~~e~~~vV~SA~sk~Tna~~ta~~~~~~c~va~~~sie~l~iIke~Hi~t 156 (559)
T KOG0456|consen 77 KGLTCVMKFGGSSVGSAERMIEVAVLILYFPDERPVVVLSAMSKTTNALLTAGEKAVCCGVANVESIEELSIIKELHIRT 156 (559)
T ss_pred cceEEEEecCCccccccchhhhhhHHHHhcCCCCeEEEEEccccchhhhhhhhhheecccccCcchHHHHHHHHHHHHhh
Confidence 88899999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
+++|+.++..+.++++.|+++|+|+++++|.++|++|+++||||++|+++|++||+..|++|.++|..++++++.++|.+
T Consensus 157 a~e~~~d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~ 236 (559)
T KOG0456|consen 157 AHELIVDPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTN 236 (559)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCC
Q 008621 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (559)
Q Consensus 239 a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (559)
+++.+.+++.+.+.+...|...+.|||++||.|+.++.|..+++||||||++|+.||.+||++++++|+|||||+|+|||
T Consensus 237 ~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~ 316 (559)
T KOG0456|consen 237 DDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPR 316 (559)
T ss_pred hhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCc
Confidence 99999999888888877887788999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEeeecCeEEE
Q 008621 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTML 398 (559)
Q Consensus 319 ~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~~~~ialI 398 (559)
++|.|+++|.+|++||.||+|||++|+||-+|+|+++.+|||||+|++||.++||.|.+++++++...|+|+.++|++++
T Consensus 317 ~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~~~GTvI~~d~~m~k~~~TsI~lK~nv~ml 396 (559)
T KOG0456|consen 317 IYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPTAPGTVITPDRDMSKAGLTSIVLKRNVTML 396 (559)
T ss_pred cCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCCCCceEeccchhhhhccceEEEEeccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred EEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeE
Q 008621 399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSI 478 (559)
Q Consensus 399 tV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~ai 478 (559)
.|.+++|+++.||++++|.+|+++||+||.+++||.+||+++++++.|++|++++ +++++.++|++++.+++.++.|+
T Consensus 397 dI~Str~l~q~GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~--~l~~a~eeL~ki~~vdll~~~sI 474 (559)
T KOG0456|consen 397 DIASTRMLGQHGFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQG--ELDQAVEELEKIAVVDLLKGRSI 474 (559)
T ss_pred EecccchhhhhhHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHh--hHHHHHHHHHHhhhhhhhccchH
Confidence 9999999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred EEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC-ccccccccccCCCCCC
Q 008621 479 ISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES-DLANLDCVCGSENNSS 557 (559)
Q Consensus 479 ISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~-~~~~~~~~~~~~~~~~ 557 (559)
||+||+|+++.+++.|.|..|+++||||+||+||+|++|||++|+++++++++++||.+||+. +..|+..++...++.+
T Consensus 475 iSLiGnvq~ss~i~~rmF~~l~e~giNvqMISQGAskvNIS~ivne~ea~k~v~~lH~~~~e~~~~~e~~~q~~~~~~~~ 554 (559)
T KOG0456|consen 475 ISLIGNVQNSSGILERMFCVLAENGINVQMISQGASKVNISCIVNEKEAEKCVQALHKAFFETLDLHEVPSQASMGVEKP 554 (559)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHhcCcceeeeccccccceEEEEEChHHHHHHHHHHHHHHcCCCCccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998 8888888887776654
|
|
| >PLN02551 aspartokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-103 Score=858.86 Aligned_cols=499 Identities=84% Similarity=1.207 Sum_probs=450.9
Q ss_pred cccCCCcccceeEeeccccchhhhccccccccccCcCCCcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 008621 41 SVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAM 120 (559)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~ 120 (559)
+...++.+++.+++.|..+......+..++..........+++|+|||||||+|+++|++|+++|....+.++|||||||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVvSA~ 91 (521)
T PLN02551 12 RSVGSSCRNIVLRVNCSAGRVEALVEAPSETRQGGGTEKQLTVVMKFGGSSVASAERMREVADLILSFPDERPVVVLSAM 91 (521)
T ss_pred ccccccchhHHHHhhhhhhhhHhhhhcccccccccccccCceEEEEECCCccCCHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 33444444457888887777666666666665666667778899999999999999999999999987666799999999
Q ss_pred CcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhh
Q 008621 121 GKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200 (559)
Q Consensus 121 g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~ 200 (559)
+|+||.|+++++.+..++..+.++.+.++.++++|.+++++|+.+...+..++++|+++++++.++++++++.+|+|+|+
T Consensus 92 ~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~ 171 (521)
T PLN02551 92 GKTTNNLLLAGEKAVSCGVTNVSEIEELSAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSF 171 (521)
T ss_pred CCchHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhH
Confidence 99999999998888766554455677899999999999999998888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCcee
Q 008621 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAIT 280 (559)
Q Consensus 201 GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~ 280 (559)
||++|+.||+++|+++|++|.++|++++||+|+++|+++++.+.+++++.+.+...|.+.+.|||+|||+|.++++|++|
T Consensus 172 GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~t 251 (521)
T PLN02551 172 GERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAIT 251 (521)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEE
Confidence 99999999999999999999999999999999999999999877888888877665555678999999999982279999
Q ss_pred eecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCE
Q 008621 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 360 (559)
Q Consensus 281 tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv 360 (559)
|||||||||||+++|++|+|++|+||||||||||+|||++|+|+++++|||+||.||+|+||+||||+|++||++++|||
T Consensus 252 tLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi 331 (521)
T PLN02551 252 TLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 331 (521)
T ss_pred ecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCeEEecCCCCccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEe
Q 008621 361 RVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTL 440 (559)
Q Consensus 361 ~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v 440 (559)
+|+|+|+|+.+||+|++..++++..||+|+.++|+++|+|.+.+|++.+||++++|+.|+++||+|+||++|+.+|+|++
T Consensus 332 ~vknt~~p~~~GT~I~~~~~~~~~~v~~It~~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssSe~sIs~~v 411 (521)
T PLN02551 332 RVKNSYNPTAPGTLITKTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSISLTL 411 (521)
T ss_pred EEEecCCCCCCCcEEecccccCCCcccceecCCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEeccCCEEEEEE
Confidence 99999999999999988765555679999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEE
Q 008621 441 DPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISL 520 (559)
Q Consensus 441 ~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~ 520 (559)
+.++.+..+.+++ .++.+..+|+++..+.+.+++++||+||+|+..+++++|+|++|+++||||+||+||+|+++|||
T Consensus 412 ~~~~~~~~~~i~~--~l~~l~~el~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~ 489 (521)
T PLN02551 412 DPSKLWSRELIQQ--ELDHLVEELEKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISL 489 (521)
T ss_pred ehhHhhhhhhHHH--HHHHHHHHhhcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEE
Confidence 9887654444443 45566777877778999999999999999878899999999999999999999999999999999
Q ss_pred EEecccHHHHHHHHHHHhccC
Q 008621 521 IVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 521 vV~~~d~~kAv~~LH~~f~~~ 541 (559)
+|+++|.++|+++||++||..
T Consensus 490 vV~~~d~~~Av~aLH~~Ff~~ 510 (521)
T PLN02551 490 IVNDDEAEQCVRALHSAFFEG 510 (521)
T ss_pred EEeHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999986
|
|
| >COG0527 LysC Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-93 Score=759.75 Aligned_cols=439 Identities=38% Similarity=0.624 Sum_probs=382.1
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCCC--CCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~--~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
|.|+|+|||||||+|+++|++++++|.+..+ .++|||+||||++||.|+++++.+..... ... .++|.+
T Consensus 1 m~~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~-------~~~--~~~~~~ 71 (447)
T COG0527 1 MRLIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRD-------AVA--EQRHRD 71 (447)
T ss_pred CceEEEEeCCcccCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccc-------hhH--HHHHHH
Confidence 3489999999999999999999999998653 67899999999999999999886543221 111 667777
Q ss_pred HHHhcCCCHH---HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 158 TVDELGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 158 ~~~~L~~~~~---~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
++.++..++. .+.....+++..+.++..+++.+++.+|+|+|+||++|+.||+++|+++|++|.+++++++++.+++
T Consensus 72 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~ 151 (447)
T COG0527 72 IASELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDS 151 (447)
T ss_pred HHHHHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecC
Confidence 7777765542 2344444447778888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
.|+++.+....+.+. +. .+++.+.|||||||+|.+ ++|++||||||||||||++||++|+|++|+||||||||||
T Consensus 152 ~~~~a~i~~~~~~~~---l~-~~~~~~~v~Vv~GF~G~~-~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~T 226 (447)
T COG0527 152 NHGNARILDEDSERR---LL-RLLEEGKVPVVAGFQGIN-EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYT 226 (447)
T ss_pred cccccccchhhhhhh---HH-HHhcCCcEEEecCceeec-CCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCcc
Confidence 999999877665541 22 235678999999999999 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEeeecC
Q 008621 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRN 394 (559)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~~~~ 394 (559)
+|||+||+|++|++|||+||+||+++|||||||+|++|++++|||++|+|+|+|+.+||+|........+.+++|+..++
T Consensus 227 aDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~~~~~v~gIa~~~~ 306 (447)
T COG0527 227 ADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPGTLITAETESDEPVVKGIALDDN 306 (447)
T ss_pred CCCCCCCcceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcCCcEEEEecCCCCCCceEEecCCcCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999986544468999999999
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec--CceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeec
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNL 472 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS--e~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~ 472 (559)
+++|++.+..|.+.+||++++|..|+++||+|++|.++ +.+++|+++.++... +.+ .+.....+.. ..+.+
T Consensus 307 ~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~--a~~---~l~~~~~~~~--~~v~~ 379 (447)
T COG0527 307 VALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPR--ALR---ALLEEKLELL--AEVEV 379 (447)
T ss_pred eEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHH--HHH---HHHHHHhhhc--ceEEe
Confidence 99999999999999999999999999999999999766 788999999876432 111 2222222221 16788
Q ss_pred ccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008621 473 LQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 473 ~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 541 (559)
.+++|+|++||. |...||+++++|++|++++|||.||+ +|++||||+|++++.++|+++||++|+.+
T Consensus 380 ~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--sSe~~Is~vV~~~~~~~av~~LH~~~~~~ 447 (447)
T COG0527 380 EEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--SSEISISFVVDEKDAEKAVRALHEAFFLG 447 (447)
T ss_pred eCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--cCCceEEEEEccHHHHHHHHHHHHHHhcC
Confidence 899999999997 88899999999999999999999999 59999999999999999999999999863
|
|
| >PRK09084 aspartate kinase III; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-88 Score=734.87 Aligned_cols=440 Identities=36% Similarity=0.545 Sum_probs=392.5
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHHh
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (559)
|+|+|||||||+|++++++|+++|... +.+++||||||||+||.|+++++.+..+ .++.+.++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~e~i~~v~~ii~~~-~~~~vvVVSA~~~~Td~L~~~~~~~~~~----~~~~~~~~~i~~~h~~~~~~ 75 (448)
T PRK09084 1 LVVAKFGGTSVADFDAMNRSADIVLSN-PNTRLVVLSASAGVTNLLVALAEGAEPG----DERLALLDEIRQIQYAILDR 75 (448)
T ss_pred CEEEEECccCcCCHHHHHHHHHHHhcC-CCCEEEEEcCCCCchHHHHHHHHHHHcC----ccHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999863 5678999999999999999998876542 35778899999999999999
Q ss_pred cCCCH---HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 162 LGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 162 L~~~~---~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
|..+. ..+.+.+++|+++++++.. +.+++.+|+|+|+||++|+.+++++|+++|++|.++|++++ ++|+++|++
T Consensus 76 l~~~~~~~~~i~~~~~~l~~l~~~~~~--~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~-i~t~~~~~~ 152 (448)
T PRK09084 76 LGDPNVVREEIERLLENITVLAEAASL--ATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGR 152 (448)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhhhh--cCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHe-EEecCCCCc
Confidence 97654 3588899999999998866 77889999999999999999999999999999999999998 899999999
Q ss_pred ceeeecc-hHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCC
Q 008621 239 ADILEAT-YPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (559)
Q Consensus 239 a~i~~~~-~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (559)
+++.... ...+.+.+.+ +++.+ |||++||+|.+ .+|++||||||||||+|+++|++|+|+++++|||||||||+||
T Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~-v~Vv~Gf~g~~-~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP 229 (448)
T PRK09084 153 AEPDVAALAELAQEQLLP-LLAEG-VVVTQGFIGSD-EKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDP 229 (448)
T ss_pred ccccHHHHHHHHHHHHHH-hhcCC-cEEecCeeecC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCC
Confidence 8874433 2333344433 34566 99999999999 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEeeecCeEE
Q 008621 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397 (559)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~~~~ial 397 (559)
|++|+|+++++|||+||.||+++|++++||+|++|++++|||++|+|+++|+.+||+|..... ....||+|+.++|+++
T Consensus 230 ~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~-~~~~v~~it~~~~i~l 308 (448)
T PRK09084 230 RIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE-NPPLFRAIALRRNQTL 308 (448)
T ss_pred CCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC-CCCeeEEEEeeCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999987643 3347999999999999
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhh--HHHHHHHHHHHHHHHHHhhhceeecccc
Q 008621 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS--RELIQQASELDHVVEELEKIAIVNLLQH 475 (559)
Q Consensus 398 ItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~--~~~~~~~~~l~~~~~~L~~~~~v~~~~~ 475 (559)
|+|.+.+|.+.+|+++++|+.|++++|+|+|+++|+.+|+|++++++... ... ..+++..+++.+..+.+.++
T Consensus 309 Itv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~sse~sIs~~i~~~~~~~~~~~~-----~~~~l~~el~~~~~i~~~~~ 383 (448)
T PRK09084 309 LTLHSLNMLHARGFLAEVFGILARHKISVDLITTSEVSVSLTLDTTGSTSTGDTL-----LTQALLTELSQLCRVEVEEG 383 (448)
T ss_pred EEEecCCCCccccHHHHHHHHHHHcCCeEEEEeccCcEEEEEEechhhhhhhhHH-----HHHHHHHHHhcCCeEEEECC
Confidence 99999999999999999999999999999999999999999999876321 111 12345666766678888899
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
+++|++||. |...||+++|+|++|++ +||.||+||+|+++|||+|+++|.++|+++||++||.
T Consensus 384 va~IsvvG~gm~~~~gv~arif~aL~~--~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH~~f~~ 447 (448)
T PRK09084 384 LALVALIGNNLSKACGVAKRVFGVLEP--FNIRMICYGASSHNLCFLVPESDAEQVVQALHQNLFE 447 (448)
T ss_pred eEEEEEECCCcccCcChHHHHHHHHHh--CCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHHHHHhc
Confidence 999999997 78899999999999974 6999999999999999999999999999999999985
|
|
| >PRK09034 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-88 Score=733.32 Aligned_cols=440 Identities=32% Similarity=0.482 Sum_probs=390.9
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCc-------ccHHHHHhhHhhhhcCcCcchhhhHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~-------~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (559)
|+|+|||||||+|++++++|+++|... .++++||||||+| +||.|+++++.+.+. .++.+.++.++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVVSA~~~~~~~~~~~Td~L~~~~~~~~~~----~~~~~~~~~~~~~ 75 (454)
T PRK09034 1 MKVVKFGGSSLASAEQFKKVLNIVKSD-PERKIVVVSAPGKRFKEDTKVTDLLILYAEAVLAG----EDYEDIFEAIIAR 75 (454)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHhcc-CCCEEEEEcCCcCCCCCccChHHHHHHHHHHHhcC----CcHHHHHHHHHHH
Confidence 689999999999999999999999864 4578999999986 999999988876542 3567789999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
|..++++|+.+.+.++.+.++|+++...+ .+.+++.+|+|+|+||++|+.+|+++|+++|+++.++|++++|++|++
T Consensus 76 ~~~~~~~L~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~ 152 (454)
T PRK09034 76 YAEIAKELGLDADILEKIEEILEHLANLA---SRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTD 152 (454)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecC
Confidence 99999999888777777777777776543 467889999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
+|+++.+...++.++.+. ...+.|||+|||+|.+ .+|+++|||||||||||+++|++|+|++++||||||||||
T Consensus 153 ~~~~a~i~~~~~~~~~~~-----~~~~~v~Vv~GFig~~-~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~t 226 (454)
T PRK09034 153 EPGNAQVLPESYDNLKKL-----RDRDEKLVIPGFFGVT-KDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYA 226 (454)
T ss_pred CcCceeEcHhhHHHHHHH-----HhcCCEEEecCccccC-CCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCc
Confidence 999988866666544432 2356799999999999 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCc-cceeeEEeeec
Q 008621 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS-KAVLTSIVLKR 393 (559)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~-~~~It~Is~~~ 393 (559)
+|||++|+|+++++|||+||.||+++|++||||+|++||+++|||++|+|+++|+++||+|....+.. +..||+|+.++
T Consensus 227 aDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~~~GT~I~~~~~~~~~~~Vk~It~~~ 306 (454)
T PRK09034 227 ANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVPDRDNKNKNPITGIAGDK 306 (454)
T ss_pred CCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCEEEEcCCCCCCCccEEEeccccCccccceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999998764322 24799999999
Q ss_pred CeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhh---hcee
Q 008621 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEK---IAIV 470 (559)
Q Consensus 394 ~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~---~~~v 470 (559)
|+++|++.+.+|.+.+|+++++|+.|+++||+|+|+++++.+++|++++++.... .+..+..++++ ...+
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ss~~sis~~v~~~~~~~a-------~~~~l~~el~~~~~~~~I 379 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPSGIDDLSIIIRERQLTPK-------KEDEILAEIKQELNPDEL 379 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEcCCCcEEEEEEeHHHhhHH-------HHHHHHHHHHHhhCCceE
Confidence 9999999988899999999999999999999999999999999999987754310 01233444442 3568
Q ss_pred ecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008621 471 NLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542 (559)
Q Consensus 471 ~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 542 (559)
.+.+++++|++||. |...+++++++|++|+++||||.||+|+.|+.+|+|+|++++.+++++.||++||..+
T Consensus 380 ~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH~~f~~~~ 452 (454)
T PRK09034 380 EIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYNAFFKEV 452 (454)
T ss_pred EEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHHHHHhccc
Confidence 88899999999997 7788999999999999999999999999999999999999999999999999999754
|
|
| >PRK06291 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-87 Score=724.44 Aligned_cols=450 Identities=39% Similarity=0.667 Sum_probs=402.5
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
|++|+|||||||+|++++++++++|... .+.+++||||||+|+||.|+++++.+... ...+++.+.++.++++|..+
T Consensus 1 ~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 79 (465)
T PRK06291 1 MRLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDV-RDIAKVKDFIADLRERHYKA 79 (465)
T ss_pred CcEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999964 34678999999999999999988765331 11245778899999999999
Q ss_pred HHhcCCCH-------HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 159 VDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 159 ~~~L~~~~-------~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
+++|..++ ..++..+++|+++++++..+++++++.+|+|+|+||++|+.|++++|+++|++|.++++++++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~ 159 (465)
T PRK06291 80 IEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGII 159 (465)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEE
Confidence 99997543 24788899999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
|+++|+++.+.+.++.++.+.+.. +++.+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++||||||
T Consensus 160 t~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~vpVv~Gfig~~-~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~G 237 (465)
T PRK06291 160 TDSNFGNARPLPKTYERVKERLEP-LLKEGVIPVVTGFIGET-EEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDG 237 (465)
T ss_pred ecCCCCceeechhhHHHHHHHHHH-HhhcCcEEEEeCcEEcC-CCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCC
Confidence 999999888766677777766654 46788999999999998 5899999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEee
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVL 391 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~ 391 (559)
|||+||+++|+|+++++|+|+||.+|+++|++++||+|++|++++|||++|+|+++|+++||+|.+...+....|++|+.
T Consensus 238 i~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~~~~~V~~It~ 317 (465)
T PRK06291 238 VMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSESSKRVVKAVTL 317 (465)
T ss_pred CCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccccCcccceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998765444457999999
Q ss_pred ecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhh--h
Q 008621 392 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEK--I 467 (559)
Q Consensus 392 ~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~--~ 467 (559)
++++++|++.+.+|.+.+|+++++|+.|+++||+|+|++ +++.+++|+++.++... + +..+.+++.. .
T Consensus 318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~--a------v~~L~~~~~~~~~ 389 (465)
T PRK06291 318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEK--A------LKALRREFGEGLV 389 (465)
T ss_pred eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHH--H------HHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998 57899999999865421 1 1222222332 4
Q ss_pred ceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008621 468 AIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 468 ~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 541 (559)
..+++.+++++|++||. |...+|+++|+|++|+++||||.||+||+|+++|||+|+++|.++|+++||++|+..
T Consensus 390 ~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~~f~~~ 464 (465)
T PRK06291 390 RDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEFILG 464 (465)
T ss_pred cceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHHHhccC
Confidence 56888999999999997 788999999999999999999999999999999999999999999999999999753
|
|
| >PRK09181 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-85 Score=712.06 Aligned_cols=435 Identities=28% Similarity=0.377 Sum_probs=363.4
Q ss_pred CcceEEEEeCccccCCHHHHHHHHH-HHHcCC----CCCcEEEEcCCCcccHHHHHhhHhh-------hhcCcCcchhhh
Q 008621 79 KQLTCVMKFGGSSLASAERMREVAE-LILSFP----NERPVIVLSAMGKTTNKLLLAGEKA-------VSCGVTNISCID 146 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~~~~~~va~-iI~~~~----~~~~vVVVSA~g~~Td~L~~~~~~~-------~~~~~~~~~~~~ 146 (559)
+|+.+|+||||||| +++++|.+ |+.... ..+.+||||||||+||.|+++.+.+ ...+ ..+++.+
T Consensus 1 ~~~~~V~KFGGtSv---~~~~~v~~~iv~~~~~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~-~~~~~~~ 76 (475)
T PRK09181 1 MMMHTVEKIGGTSM---SAFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTDALLEHKKTGEPGVYALFAKA-NDEAWRE 76 (475)
T ss_pred CCceEEEEECCCcH---HHHHHHHhheEeccccccCCCCeEEEEeCCCcchHHHHHhHhhcchhHHHHHHHh-cCccHHH
Confidence 46689999999999 45666766 444331 2578999999999999999866411 1110 1346778
Q ss_pred HHHHHHHHHHHHHHhcCCCH-------HH-------HHHHHHHHHHHHH-hhhhccCCCHHHHHHHHhhhHHHHHHHHHH
Q 008621 147 ELSFVKDLHHRTVDELGIDR-------SI-------IATHLEELEQLLK-GIAMLKELTPRSRDYLVSFGECMSTRIFAA 211 (559)
Q Consensus 147 ~l~~i~~~~~~~~~~L~~~~-------~~-------i~~~~~~l~~~l~-~i~~~~~~~~~~~d~ils~GE~lsa~ll~~ 211 (559)
.++.++++|..++++|..+. +. +..++.++++++. ++.++++++++.+|+|+|+||++|+.||+.
T Consensus 77 ~l~~i~~~~~~i~~~L~~~~~~~~~~~~~i~~~~~~~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~ 156 (475)
T PRK09181 77 ALEAVEQRMLAINAELFADGLDLARADKFIRERIEEARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTAL 156 (475)
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHH
Confidence 89999999999999997432 12 3667777777777 888899999999999999999999999999
Q ss_pred HHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHH
Q 008621 212 YLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTA 291 (559)
Q Consensus 212 ~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tA 291 (559)
+|+++|++|.++|+..+ ..++ +.. ..+++.+.+.. |...+.|||+|||++ + ++|++||||||||||||
T Consensus 157 ~L~~~Gi~a~~ld~~~~--~~~~------~~~-~~~~i~~~l~~-~~~~~~v~Vv~GF~~-~-~~G~itTLGRGGSDyTA 224 (475)
T PRK09181 157 LLQNRGVNARFVDLTGW--DDDD------PLT-LDERIKKAFKD-IDVTKELPIVTGYAK-C-KEGLMRTFDRGYSEMTF 224 (475)
T ss_pred HHHhCCCCeEEeccccc--cCCc------ccc-hHHHHHHHHhh-hccCCcEEEecCCcC-C-CCCCEEecCCChHHHHH
Confidence 99999999999987543 1111 111 23445544432 223567999999975 5 47999999999999999
Q ss_pred HHHHHHcCcCcEEEeeCCcccccCCCCCC--CCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC
Q 008621 292 TTIGKALGLQEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN 369 (559)
Q Consensus 292 a~lA~~L~A~~l~i~TDV~GV~taDP~~v--~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (559)
++||++|+|++|+|||||+ |||+|||++ |+|++|++|||+||.||+++||+||||+|++||+++|||++|+|+|+|+
T Consensus 225 ailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~ 303 (475)
T PRK09181 225 SRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPE 303 (475)
T ss_pred HHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC
Confidence 9999999999999999997 999999999 6999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCCCccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHH
Q 008621 370 APGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRE 449 (559)
Q Consensus 370 ~~GT~I~~~~~~~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~ 449 (559)
.+||+|.+...+....+++|+.++++++|++.+.+|.+.+|+++++|+.|++++|+|+++++++.+++|+++.+ ..
T Consensus 304 ~~GT~I~~~~~~~~~~ik~It~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ss~~sis~~v~~~-~~--- 379 (475)
T PRK09181 304 HPGTLITKDYVSEQPRVEIIAGSDKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKATNANTITHYLWGS-LK--- 379 (475)
T ss_pred CCCeEEecCcccccccceeEeccCCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEEecCcEEEEEEcCC-hH---
Confidence 99999987543344568999999999999999999999999999999999999999999999999999999876 11
Q ss_pred HHHHHHHHHHHHHHHhh---hceeecccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEeccc
Q 008621 450 LIQQASELDHVVEELEK---IAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDE 526 (559)
Q Consensus 450 ~~~~~~~l~~~~~~L~~---~~~v~~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d 526 (559)
.+++++++|++ ...+.. +++|+|++||..+..+|+++|+|++|+++|||+.||+||+|+++||++|+++|
T Consensus 380 ------~~~~~~~~L~~~~~~~~i~~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d 452 (475)
T PRK09181 380 ------TLKRVIAELEKRYPNAEVTV-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDD 452 (475)
T ss_pred ------HHHHHHHHHHHhcCCceEEE-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHH
Confidence 12233334442 134664 89999999998335899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 008621 527 AEQCVRALHETFFES 541 (559)
Q Consensus 527 ~~kAv~~LH~~f~~~ 541 (559)
.++|+++||++||..
T Consensus 453 ~~~Av~~lH~~f~~~ 467 (475)
T PRK09181 453 YEKAICALHEALVEN 467 (475)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999854
|
|
| >PRK05925 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-84 Score=693.01 Aligned_cols=436 Identities=26% Similarity=0.387 Sum_probs=378.0
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
|.|+|+|||||||+|++++++++++|... .+++||||||+|+||.|+++++.+. ....+.++.++++|..++
T Consensus 1 ~~~~V~KFGGtSv~~~e~i~~v~~ii~~~--~~~vVVvSA~~~~Td~L~~~~~~a~------~~~~~~~~~i~~~~~~~~ 72 (440)
T PRK05925 1 MAPLVYKFGGTSLGTAESIRRVCDIICKE--KPSFVVVSAVAGVTDLLEEFCRLSK------GKREALTEKIREKHEEIA 72 (440)
T ss_pred CCcEEEEECccccCCHHHHHHHHHHHhcC--CCEEEEECCCCCCHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999863 5689999999999999999877542 224567899999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCc
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (559)
++|..+. .+.+++++|++++. .++++++.+|+++|+||++|+.|++++|+++|++|.++|++++ ++|+++|+++
T Consensus 73 ~~l~~~~-~~~~~~~~L~~~~~----~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a 146 (440)
T PRK05925 73 KELGIEF-SLSPWWERLEHFED----VEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRA 146 (440)
T ss_pred HHhhcch-hhhHHHHHHHHHHH----hCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHh-EeecCCcccc
Confidence 9997643 25566777777765 4677889999999999999999999999999999999999998 8999999988
Q ss_pred eeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCC
Q 008621 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (559)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (559)
+++ .+.+.+.+....++++.|||+|||+|.+ ++|+++|||||||||+|+++|.+|+|++++||||||||||+||++
T Consensus 147 ~~~---~~~~~~~~~~~~~~~~~v~Vv~GF~g~~-~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~ 222 (440)
T PRK05925 147 VPD---LALMQTAWHELALQEDAIYIMQGFIGAN-SSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKI 222 (440)
T ss_pred ccC---HHHHHHHHHHhhccCCcEEEecCcceeC-CCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCC
Confidence 873 2233344443334566899999999999 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCC--CccceeeEEeeecCeEE
Q 008621 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--MSKAVLTSIVLKRNVTM 397 (559)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--~~~~~It~Is~~~~ial 397 (559)
+|+|++|++++|+||.||+++|++++||++++||+++|||++|+|+++|+++||+|.+..+ .+...||+|+.++|+++
T Consensus 223 ~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~~~GT~i~~~~~~~~~~~~ik~It~~~~~~~ 302 (440)
T PRK05925 223 IKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEVSYEPRIKALSLKQNQAL 302 (440)
T ss_pred CCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCcEEEecCCCCCCCccEEecCCccccCCCceEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999987532 33446999999999999
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeeccccee
Q 008621 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRS 477 (559)
Q Consensus 398 ItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~a 477 (559)
+++.+. ....++++++|+.|+++||+++++++++.+++|+++.++... . .+..+..+++.+..+++.+++|
T Consensus 303 i~v~~~--~~~~~~~~~if~~l~~~~I~vd~i~s~~~sis~~i~~~~~~~-~------~~~~l~~~l~~~~~i~~~~~~a 373 (440)
T PRK05925 303 WSVDYN--SLGLVRLEDVLGILRSLGIVPGLVMAQNLGVYFTIDDDDISE-E------YPQHLTDALSAFGTVSCEGPLA 373 (440)
T ss_pred EEEecC--CcchhHHHHHHHHHHHcCCcEEEEeccCCEEEEEEechhccH-H------HHHHHHHHhcCCceEEEECCEE
Confidence 999753 235788999999999999999999877899999999765321 1 2333455566667788899999
Q ss_pred EEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCccc
Q 008621 478 IISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLA 544 (559)
Q Consensus 478 iISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~~~~ 544 (559)
+||+||..+..+++++++|.+|++.|||+.+++| |+.+|||+|+++|.++|+++||++||.++|+
T Consensus 374 ~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~--s~~~is~vV~~~d~~~av~~LH~~f~~~~~~ 438 (440)
T PRK05925 374 LITMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQ--SDMALNLVVNEELAVAVTELLHNDYVKQKFS 438 (440)
T ss_pred EEEEeCCCcccccHHHHHHHHHhhCCCCEEEEEC--CCceEEEEEehHHHHHHHHHHHHHHhccccc
Confidence 9999998333488999999999999999999988 6679999999999999999999999999886
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-83 Score=726.94 Aligned_cols=439 Identities=24% Similarity=0.358 Sum_probs=370.1
Q ss_pred CCcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 78 EKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 78 ~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
..|.|+|+|||||||+|++++++|+++|....+.+++||||||+|+||.|+++++.+... ...+.+.++.++++|.+
T Consensus 8 ~~M~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVVSA~~~~Td~L~~~~~~~~~~---~~~~~~~l~~i~~~h~~ 84 (810)
T PRK09466 8 GAMGRQLHKFGGSSLADAKCYRRVAGILAEYSQPDDLVVVSAAGKTTNQLISWLKLSQTD---RLSAHQVQQTLRRYQQD 84 (810)
T ss_pred ccceeEEEEECccccCCHHHHHHHHHHHhhhccCCEEEEEcCCCCCHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHH
Confidence 567899999999999999999999999997655568999999999999999988765321 23456778999999999
Q ss_pred HHHhcCCCHH------HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 158 TVDELGIDRS------IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 158 ~~~~L~~~~~------~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
++++|..+.. .+.+.+++|++++. ++++++.+|+|+|+||+||+.||+++|+++|+++.++|++++ +
T Consensus 85 ~~~~L~~~~~~~~~~~~i~~~~~~l~~~l~-----~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~--i 157 (810)
T PRK09466 85 LIEGLLPAEQARSLLSRLISDLERLAALLD-----GGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSF--L 157 (810)
T ss_pred HHHHhhcchhhhHHHHHHHHHHHHHHHHhh-----ccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHh--e
Confidence 9999976432 25556666666665 478889999999999999999999999999999999999995 5
Q ss_pred EecCCCCceee-ecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 232 TTDDFTNADIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 232 t~~~~~~a~i~-~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
+++++.++++. ..+.+++.+.+.. ..+.+||+|||+|.+ ++|++||||||||||||+++|++|+|++|+||||||
T Consensus 158 ~~~~~~~~~i~~~~~~~~l~~~~~~---~~~~v~Vv~GF~g~~-~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~ 233 (810)
T PRK09466 158 RAERAAQPQVDEGLSYPLLQQLLAQ---HPGKRLVVTGFISRN-EAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVA 233 (810)
T ss_pred ecCCCCCcccchhhhHHHHHHHHhc---cCCeEEEeeCccccC-CCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 55555556653 2344444443321 134799999999999 589999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEe
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV 390 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is 390 (559)
||||+|||++|+|++|++|||+||.||+++||+||||+|++|++++||||+|+|+|+|+.+||+|..... ....+++|+
T Consensus 234 Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~-~~~~v~~It 312 (810)
T PRK09466 234 GVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA-SGTGARIVT 312 (810)
T ss_pred ccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc-cccceeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999986422 233589999
Q ss_pred eecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe--cCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhc
Q 008621 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIA 468 (559)
Q Consensus 391 ~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist--Se~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~ 468 (559)
.++++++|++.+.++.+.+|+++++|+.|++++|+++|+++ ++.+++|+++.++.. .+...++++....
T Consensus 313 ~~~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~---------~~~~~l~~~~~~~ 383 (810)
T PRK09466 313 SLDDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVAD---------SALKLLDDAALPG 383 (810)
T ss_pred ccCCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHH---------HHHHHHHhhcCCC
Confidence 99999999999887788899999999999999999999964 456799999755321 1122222332346
Q ss_pred eeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008621 469 IVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542 (559)
Q Consensus 469 ~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 542 (559)
.+.+.+++|+||+||. |.+.+|+++|+|++|.+.+|++ +++++|+.||||+|+++|.++|+++||++||...
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~i--i~~~~s~~sis~vV~~~d~~~av~~LH~~f~~~~ 456 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEF--IWQSEDGLSLVAVLRQGPTESLIQGLHQSLFRAE 456 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcE--EEEeCCCcEEEEEEehHHHHHHHHHHHHHHhCcC
Confidence 7888899999999997 7889999999999999886665 5556699999999999999999999999999763
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-81 Score=715.97 Aligned_cols=445 Identities=32% Similarity=0.510 Sum_probs=388.3
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (559)
|+|+|||||||++++++++++++|.... ..++|||||||+|+||.|+++++.+.+. +.++...++.++++|. +++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vVVVSA~~~vTd~L~~~~~~~~~~---~~~~~~~~~~~~~~h~-~~~ 76 (819)
T PRK09436 1 MRVLKFGGTSVANAERFLRVADIIESNARQEQVAVVLSAPAKVTNHLVAMIEKAAKG---DDAYPEILDAERIFHE-LLD 76 (819)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHhhcccCCEEEEEcCCcCcHHHHHHHHHHHhcC---CchHHHHHHHHHHHHH-HHH
Confidence 6899999999999999999999999753 3678999999999999999998876542 1345667888888884 333
Q ss_pred hc---CCC------HHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 161 EL---GID------RSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 161 ~L---~~~------~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
.| ... .+.+.+.+++|++++++++++++++++.+|+|+|+||+||+.||+++|+++|++|.++|++++ ++
T Consensus 77 ~l~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~ 155 (819)
T PRK09436 77 GLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPREL-LL 155 (819)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHe-EE
Confidence 33 111 135888999999999999999999999999999999999999999999999999999999998 88
Q ss_pred EecCCCCceee-ecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 232 TTDDFTNADIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 232 t~~~~~~a~i~-~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
|++.|+++.+. +...+.+++. +.+.+.|||+|||+|.+ .+|+++||||||||++|+++|.+|+|+++++|||||
T Consensus 156 t~~~~~~~~~~~~~~~~~i~~~----~~~~~~v~Vv~Gfig~~-~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVd 230 (819)
T PRK09436 156 ADGHYLESTVDIAESTRRIAAS----FIPADHVILMPGFTAGN-EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVD 230 (819)
T ss_pred ecCCCCCceechHhhHHHHHHH----HhcCCcEEEecCcccCC-CCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCC
Confidence 88888888873 3344444433 23457899999999998 589999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEe
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV 390 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is 390 (559)
||||+||+++|+|++|++|||+||.+|+++|++++||+|++||+++|||++|+|+++|+.+||+|+...++....|++|+
T Consensus 231 Gvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~~~~~~Vk~It 310 (819)
T PRK09436 231 GVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESDEDSLPVKGIS 310 (819)
T ss_pred ceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCCCCceEEEecCcccccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999876544455799999
Q ss_pred eecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCchhhHHHHHHHHHHHH-HHHHHh--
Q 008621 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWSRELIQQASELDH-VVEELE-- 465 (559)
Q Consensus 391 ~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~~~~~~~~~~~~l~~-~~~~L~-- 465 (559)
.++|+++|++.+.+|.+.+|+++++|+.|+++||+|+|++ +|+.+++|+++.++... +++ .+++ +..++.
T Consensus 311 ~~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~--av~---~L~~~f~~el~~~ 385 (819)
T PRK09436 311 NLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAK--AKR---ALEEEFALELKEG 385 (819)
T ss_pred EeCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHH--HHH---HHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999998 56899999999876432 111 1222 112332
Q ss_pred hhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008621 466 KIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 466 ~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 541 (559)
.+..+++.+++++|++||. |...+++++|+|++|.++||||+||+||+|+++|||+|+++|.++|+++||++|+..
T Consensus 386 ~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~~f~~~ 462 (819)
T PRK09436 386 LLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQSFFLS 462 (819)
T ss_pred CcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHHHHhcc
Confidence 2456888899999999997 888999999999999999999999999999999999999999999999999999876
|
|
| >PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-79 Score=710.48 Aligned_cols=449 Identities=27% Similarity=0.469 Sum_probs=389.5
Q ss_pred CCcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHH
Q 008621 78 EKQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (559)
Q Consensus 78 ~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 155 (559)
..|.|+|+|||||||+|++++++++++|... .+++++||||||+|+||+|+++++.+.+ .++.+.++.++++|
T Consensus 5 ~~~~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~-----~~~~~~~~~i~~~~ 79 (861)
T PRK08961 5 STDRWVVLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGA-----GDSASRVAAIRQRH 79 (861)
T ss_pred CCCCcEEEEECccccCCHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhc-----cCHHHHHHHHHHHH
Confidence 3478899999999999999999999999864 2467899999999999999998765432 34678899999999
Q ss_pred HHHHHhcCCCHH-HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 156 HRTVDELGIDRS-IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 156 ~~~~~~L~~~~~-~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
..++++|+.+.+ .+.+.+++|+++++++..+++.+++.+|+++|+||++|+.||+++|+++|+++.++|++++ +++++
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-~~~~~ 158 (861)
T PRK08961 80 RELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREW-LTALP 158 (861)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHh-EeecC
Confidence 999999976643 6889999999999999999999999999999999999999999999999999999999998 55655
Q ss_pred C-CC--Cceeeecch-HHHHHHHhhchhcCC-cEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 235 D-FT--NADILEATY-PAVAKRLHGDWITDL-AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 235 ~-~~--~a~i~~~~~-~~i~~~l~~~l~~~~-~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+ +. ......... ......+...+++.+ .|||+|||+|.+ .+|++|||||||||++|+++|.+|+|+++++||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~-~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv 237 (861)
T PRK08961 159 QPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARN-ADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDV 237 (861)
T ss_pred ccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeC-CCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCC
Confidence 2 21 122211110 112222332233444 599999999999 58999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSI 389 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~I 389 (559)
|||||+||+++|+|+++++|||+||.||+++|++|+||+|++||+++|||++|+|+++|+.+||+|..+. +....||+|
T Consensus 238 ~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~-~~~~~v~~I 316 (861)
T PRK08961 238 PGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDA-EPVPGVKAI 316 (861)
T ss_pred CccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCC-CCCCcceeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999998754 334579999
Q ss_pred eeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchh-hHHHHHHHHHHHHHHHHHhhhc
Q 008621 390 VLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW-SRELIQQASELDHVVEELEKIA 468 (559)
Q Consensus 390 s~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~-~~~~~~~~~~l~~~~~~L~~~~ 468 (559)
+.++|+++|++.+.+|.+.+||++++|+.|++++|+|+||++|+.+++|++++.+.. ..+ .++.+..+++.+.
T Consensus 317 t~~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~sse~sis~~i~~~~~~~~~~------~~~~l~~~l~~~~ 390 (861)
T PRK08961 317 SRKNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISSSETNVTVSLDPSENLVNTD------VLAALSADLSQIC 390 (861)
T ss_pred EEECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEEcCCCEEEEEEccccccchHH------HHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999886532 111 2344555666667
Q ss_pred eeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008621 469 IVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542 (559)
Q Consensus 469 ~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 542 (559)
.+.+.+++|+||+||. |...+|+++|+|++|++. +|.+++||+|+++|||+|+++|.++|++.||++||..+
T Consensus 391 ~i~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~--~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~~f~~~~ 463 (861)
T PRK08961 391 RVKIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAE--RVHLISQASNDLNLTFVIDESDADGLLPRLHAELIESG 463 (861)
T ss_pred cEEEeCCeEEEEEeCCCcccCcChHHHHHHHHhhc--CeEEEECCCccccEEEEEeHHHHHHHHHHHHHHHhcCC
Confidence 7888899999999997 888999999999999874 67889999999999999999999999999999999874
|
|
| >TIGR00657 asp_kinases aspartate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-76 Score=640.58 Aligned_cols=434 Identities=36% Similarity=0.583 Sum_probs=370.1
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
+|+|+|||||||+|++++++++++|.... +.+++||||||+|+||.|+++++.+... ...+.++.++++|.++
T Consensus 1 ~~~V~KFGGssv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~-----~~~~~~~~i~~~~~~~ 75 (441)
T TIGR00657 1 ALIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPG-----PSKEFLEKIREKHIEI 75 (441)
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHH
Confidence 47899999999999999999999999743 4578999999999999999988766432 1256789999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
+++|. +. ...++++++.+.+.. ...+++.+|+++|+||++|+.+++++|+++|++++++++.+.+++++++|++
T Consensus 76 ~~~l~-~~----~~~~~~~~~~~~~~~-~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~ 149 (441)
T TIGR00657 76 LERLI-PQ----AIAEELKRLLDAELV-LEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGR 149 (441)
T ss_pred HHHhh-hH----HHHHHHHHHHHHHHh-hhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCc
Confidence 99997 32 233334444443321 1223678899999999999999999999999999999999999999998887
Q ss_pred ce-eeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCC
Q 008621 239 AD-ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (559)
Q Consensus 239 a~-i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (559)
+. +...+...+. .+++.+.|||++||+|.+ .+|+++++||||||++|+++|.+|+|+++++||||||||++||
T Consensus 150 ~~~~~~~~~~~l~-----~~l~~~~vpVv~G~~g~~-~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP 223 (441)
T TIGR00657 150 ARVIIEILTERLE-----PLLEEGIIPVVAGFQGAT-EKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDP 223 (441)
T ss_pred eeecHhhhHHHHH-----HHHhcCCEEEEeCcEeeC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence 65 3334443332 245678999999999998 4899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCC-CccceeeEEeeecCeE
Q 008621 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD-MSKAVLTSIVLKRNVT 396 (559)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~-~~~~~It~Is~~~~ia 396 (559)
+++|+++++++|||+||.+|+++|++++||+|++|+++++||++|+|+++|+.+||+|.+..+ +.+..+++|+.+++++
T Consensus 224 ~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~~~~~~~i~~It~~~~v~ 303 (441)
T TIGR00657 224 RIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLIVASTKEMEEPIVKGLSLDRNQA 303 (441)
T ss_pred CCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcCCeEEEecCCCCCCCceEEEeCCCccccCccceEEEeCCEE
Confidence 999999999999999999999999999999999999999999999999999999999987654 3445799999999999
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeeccc
Q 008621 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQ 474 (559)
Q Consensus 397 lItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~ 474 (559)
+|++.+.+|.+ +|+++++|+.|+++||++++++ +++.+|+|+++.++... +.+ .+.. ......+..+++.+
T Consensus 304 ~Isv~g~~~~~-~g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~--a~~---~L~~-~~~~~~~~~I~~~~ 376 (441)
T TIGR00657 304 RVTVSGLGMKG-PGFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQ--AKT---LLKS-ELNLSALSSVEVEK 376 (441)
T ss_pred EEEEECCCCCC-ccHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHH--HHH---HHHH-HHHhcCcceEEEcC
Confidence 99999988888 9999999999999999999997 45789999998765321 111 1111 11122345688899
Q ss_pred ceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 475 HRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 475 ~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
++++|+++|. |...|++++++|++|+++||||.||++ |+.+|+|+|+++|.++|+++||++|++
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~--se~~Is~vV~~~d~~~a~~~Lh~~f~~ 441 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISS--SEINISFVVDEKDAEKAVRLLHNALFE 441 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEe--cCCcEEEEEeHHHHHHHHHHHHHHhhC
Confidence 9999999997 778899999999999999999999996 789999999999999999999999974
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. |
| >PRK08841 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=607.43 Aligned_cols=378 Identities=30% Similarity=0.452 Sum_probs=329.7
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
|.|+|+|||||||+|++++++++++|... .+.+++||||||+++||.|++++...
T Consensus 1 m~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~----------------------- 57 (392)
T PRK08841 1 MPLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQV----------------------- 57 (392)
T ss_pred CCeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhh-----------------------
Confidence 46899999999999999999999999964 34678999999999999998753210
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (559)
. +..+++.+|.++|+||++|+.|++++|+++|+++.+++++|.++++++.+.
T Consensus 58 -----~-----------------------~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~ 109 (392)
T PRK08841 58 -----D-----------------------SVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHN 109 (392)
T ss_pred -----c-----------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCC
Confidence 0 112466789999999999999999999999999999999998899988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCC
Q 008621 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (559)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (559)
++++...+...+.+ +++.+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++|||||||||+||
T Consensus 110 ~~~i~~~~~~~i~~-----ll~~~~vpVv~Gf~g~~-~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP 183 (392)
T PRK08841 110 DATIKHIDTSTITE-----LLEQDQIVIVAGFQGRN-ENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183 (392)
T ss_pred CceechhhHHHHHH-----HHhCCCEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCC
Confidence 78776555443332 34678899999999999 4899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEeeecCeEE
Q 008621 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397 (559)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~~~~ial 397 (559)
+++|+|+++++|+|+||.||+++|++||||+|++|++++|||++|+|+++| .+||+|.... ....||+|+.++|+++
T Consensus 184 ~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~-~~GT~I~~~~--~~~~i~~i~~~~~~~~ 260 (392)
T PRK08841 184 RVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV-GEGTLIKGEA--GTQAVCGIALQRDLAL 260 (392)
T ss_pred CCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCC-CCCeEEEecc--CCCcEEEEEEeCCeEE
Confidence 999999999999999999999999999999999999999999999999997 6899997642 3447999999999999
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeeccccee
Q 008621 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRS 477 (559)
Q Consensus 398 ItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~a 477 (559)
|++.+. .++++|+.|+++||+++++++++.+++|+++..++ +.+...+ ...+...++++
T Consensus 261 i~v~~~-------~~~~i~~~l~~~~i~v~~i~~~~~~~~~~v~~~~~------------~~~~~~~--~~~i~~~~~~a 319 (392)
T PRK08841 261 IEVESE-------SLPSLTKQCQMLGIEVWNVIEEADRAQIVIKQDAC------------AKLKLVF--DDKIRNSESVS 319 (392)
T ss_pred EEeccc-------hHHHHHHHHHHcCCCEEEEEecCCcEEEEECHHHH------------HHHHHhC--cccEEEeCCEE
Confidence 999752 46899999999999999999999999999986432 1111111 12467778999
Q ss_pred EEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008621 478 IISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542 (559)
Q Consensus 478 iISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 542 (559)
+|++||.. .||+++|+|++|.+++||+.++++ |+++|||+|+++|.++|+++||++|+..+
T Consensus 320 ~vsvVG~~--~~gv~~~~~~aL~~~~I~i~~i~~--s~~~is~vv~~~~~~~av~~lH~~f~~~~ 380 (392)
T PRK08841 320 LLTLVGLE--ANGMVEHACNLLAQNGIDVRQCST--EPQSSMLVLDPANVDRAANILHKTYVTSE 380 (392)
T ss_pred EEEEECCC--ChHHHHHHHHHHHhCCCCEEEEEC--CCcEEEEEEeHHHHHHHHHHHHHHHcCCc
Confidence 99999973 389999999999999999999998 78999999999999999999999999874
|
|
| >TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=597.12 Aligned_cols=394 Identities=36% Similarity=0.586 Sum_probs=343.3
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
+++|+|||||+|++++.+++++++|... .+.+++|||||++++||.|+++++...
T Consensus 1 ~~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~----------------------- 57 (401)
T TIGR00656 1 ELIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAI----------------------- 57 (401)
T ss_pred CcEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHh-----------------------
Confidence 4689999999999999999999999864 346889999999999999987643110
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
-...++..+|+++++||++|+.+++++|+++|+++.++++.+.+++|++++++
T Consensus 58 ---------------------------~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~ 110 (401)
T TIGR00656 58 ---------------------------RDAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGN 110 (401)
T ss_pred ---------------------------ccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCc
Confidence 01235677899999999999999999999999999999999999999998888
Q ss_pred ceeeecch-HHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCC
Q 008621 239 ADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (559)
Q Consensus 239 a~i~~~~~-~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (559)
+++.+... ..+.+ +++.+.|||++||+|.+ .+|+++|+||||||++|+++|.+|+|+++++|||||||||+||
T Consensus 111 ~~~~~~~~~~~l~~-----~l~~~~vpVi~g~~~~~-~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP 184 (401)
T TIGR00656 111 AKIDIIATEERLLP-----LLEEGIIVVVAGFQGAT-EKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDP 184 (401)
T ss_pred eEeeecchHHHHHH-----HHhCCCEEEecCcceeC-CCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence 87766554 33332 35678999999999998 4899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEeeecCeEE
Q 008621 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397 (559)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~~~~ial 397 (559)
+++|+|+++++|||+||.+|+++|++++||+|++||++++||++|+|+++|+ +||+|.+... ..+.+++|+.++|+++
T Consensus 185 ~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~-~gT~I~~~~~-~~~~v~~I~~~~~va~ 262 (401)
T TIGR00656 185 RVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE-EGTLITNSME-NPPLVKGIALRKNVTR 262 (401)
T ss_pred CCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC-CCeEEEeCcc-cCCceEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999999998 8999987532 2236999999999999
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe--cCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccc
Q 008621 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQH 475 (559)
Q Consensus 398 ItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist--Se~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~ 475 (559)
|++.+.+|.+.+|+++++|+.|++++|+++++++ |+.+++|+++.++... +.+ .+++..... ....+.+.++
T Consensus 263 vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~--a~~---~L~~~~~~~-~~~~i~~~~~ 336 (401)
T TIGR00656 263 VTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLTVDETDADE--AVR---ALKDQSGAA-GLDRVEVEEG 336 (401)
T ss_pred EEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHH--HHH---HHHHHHHhc-CCceEEEeCC
Confidence 9999999999999999999999999999999998 7899999998765321 111 122211111 1245778899
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
+++|++||. |...||+++++|++|+++|||+.+++ +|+.+++|+|+++|.++|+++||++||.
T Consensus 337 ~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~s~~~is~vv~~~d~~~av~~Lh~~f~~ 400 (401)
T TIGR00656 337 LAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--SSETNISFLVDEKDAEKAVRKLHEVFEE 400 (401)
T ss_pred eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEeHHHHHHHHHHHHHHHcc
Confidence 999999997 78899999999999999999999987 5899999999999999999999999985
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. |
| >PRK08210 aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-68 Score=570.38 Aligned_cols=388 Identities=31% Similarity=0.519 Sum_probs=333.7
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCc-----ccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGK-----TTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~-----~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
|.++|+|||||++.|++.++++++.|... .+.+++||+||||+ +|+.|+..+...
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~------------------ 62 (403)
T PRK08210 1 MKIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEE------------------ 62 (403)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHh------------------
Confidence 56899999999999999999999998863 24578999999977 588876543210
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (559)
....+++.+|.++++||.+|+.+++++|+++|+++.++++++.+++|
T Consensus 63 ---------------------------------~~~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t 109 (403)
T PRK08210 63 ---------------------------------FSEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIIT 109 (403)
T ss_pred ---------------------------------ccCCChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEc
Confidence 01235677888999999999999999999999999999999988999
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccc
Q 008621 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (559)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (559)
+++++++++...+...+.+ +++.+.|||++||+|.+ .+|+++|+||||||++|+++|.+|+|++++||||||||
T Consensus 110 ~~~~~~~~v~~~~~~~l~~-----~l~~~~vpVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV 183 (403)
T PRK08210 110 DDNFTNAKIIEVNPDRILE-----ALEEGDVVVVAGFQGVT-ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGI 183 (403)
T ss_pred cCCCCceeeehhhHHHHHH-----HHhcCCEEEeeCeeecC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9988877775555443332 34678999999999998 58999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCC------Ccccee
Q 008621 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD------MSKAVL 386 (559)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~------~~~~~I 386 (559)
|++||+++|++++|++|||+||.+|+++|++|+||+|++||+++|||++|+|+++| .+||+|.+..+ +....|
T Consensus 184 ~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~-~~gT~I~~~~~~~~~~~~~~~~v 262 (403)
T PRK08210 184 MTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSD-SPGTLITSLGDAKGGIDVEERLI 262 (403)
T ss_pred CcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEEEecCCC-cCCcEEEecCccccccccccCce
Confidence 99999999999999999999999999999999999999999999999999999985 46999987632 234579
Q ss_pred eEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhh
Q 008621 387 TSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEK 466 (559)
Q Consensus 387 t~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~ 466 (559)
|+|+.++|+++|++.+..+ .+|+++++|+.|+++||+|++++++..+++|+++.++.. .+..++.++.
T Consensus 263 ~~It~~~~i~~isv~~~~~--~~g~la~If~~L~~~~I~i~~i~~~~~~is~~v~~~~~~---------~a~~~l~~~~- 330 (403)
T PRK08210 263 TGIAHVSNVTQIKVKAKEN--AYDLQQEVFKALAEAGISVDFINIFPTEVVFTVSDEDSE---------KAKEILENLG- 330 (403)
T ss_pred EEEEEcCCcEEEEEecCCC--cchHHHHHHHHHHHcCCeEEEEEecCceEEEEEcHHHHH---------HHHHHHHHhC-
Confidence 9999999999999986543 499999999999999999999998888999999865431 1222333332
Q ss_pred hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 467 IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 467 ~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
..+.+.+++++|+++|. |...||+++|+|++|+++|||+.++++ |+++++|+|+++|.++|+++||++|+.
T Consensus 331 -~~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~--s~~~is~vv~~~~~~~a~~~Lh~~f~~ 402 (403)
T PRK08210 331 -LKPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD--SHTTIWVLVKEEDMEKAVNALHDAFEL 402 (403)
T ss_pred -CcEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec--CCCEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 14777889999999997 888999999999999999999988766 899999999999999999999999964
|
|
| >PRK07431 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=590.70 Aligned_cols=395 Identities=30% Similarity=0.478 Sum_probs=340.4
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
|+|+|+|||||||+|++.+++++++|.... +.+++||+||+|++||+|++++...
T Consensus 1 m~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~----------------------- 57 (587)
T PRK07431 1 MALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEI----------------------- 57 (587)
T ss_pred CCeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHh-----------------------
Confidence 568999999999999999999999999643 4578999999999999998653210
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (559)
.++.+...+|+++++||++|+.+++.+|+++|+++++++++++++++++.++
T Consensus 58 ----------------------------t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~ 109 (587)
T PRK07431 58 ----------------------------SSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHG 109 (587)
T ss_pred ----------------------------ccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCC
Confidence 1233567789999999999999999999999999999999999899988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccC-CCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCC
Q 008621 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW-RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (559)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~-~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (559)
.+++...+.+.+.+ +++.+.|||++||+|.+. .+|+++|+||||||++|+++|.+|+|+++++|||||||||+|
T Consensus 110 ~~~i~~~~~~~l~~-----~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~D 184 (587)
T PRK07431 110 RARILEIKTDRIQR-----HLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTD 184 (587)
T ss_pred ceeeeeccHHHHHH-----HHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCC
Confidence 78877666554443 346789999999999753 238899999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCc--------cceeeE
Q 008621 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS--------KAVLTS 388 (559)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~--------~~~It~ 388 (559)
|+++|+|++|++|+|+|+.+|+++|+++|||+|++|++++|||++|+|++ |+.+||+|.+..+.. ...+++
T Consensus 185 P~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~-~~~~GT~i~~~~~~~~~~~~~~~~~~i~g 263 (587)
T PRK07431 185 PRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSW-SDAPGTLVTSPPPRPRSLGGLELGKPVDG 263 (587)
T ss_pred CCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCC-CCCCCeEEEeCCcccccccchhcccccce
Confidence 99999999999999999999999999999999999999999999999999 466899998764321 346899
Q ss_pred EeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-----CceeEEEeCCCchhhHHHHHHHHHHHHHHHH
Q 008621 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQQASELDHVVEE 463 (559)
Q Consensus 389 Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-----e~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~ 463 (559)
++..++++++++. ++.+.+||++++|+.|+++||+|+|++++ ..+++|+++.++... ..+ .++.+..+
T Consensus 264 i~~~~~~a~itl~--~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~--~~~---~l~~l~~~ 336 (587)
T PRK07431 264 VELDEDQAKVALL--RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENELKK--AEA---VAEAIAPA 336 (587)
T ss_pred EEEecCceEEEEe--cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHHHH--HHH---HHHHHHHH
Confidence 9999999999996 57889999999999999999999999863 278999998766432 111 23333333
Q ss_pred HhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008621 464 LEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 464 L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 541 (559)
+.. ..+++.+++++|+++|. |...+|+++|+|++|++++|||.+|+ +|+++|||+|+++|+++|++.||++|+..
T Consensus 337 ~~~-~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe~~Is~vv~~~d~~~av~~Lh~~f~~~ 412 (587)
T PRK07431 337 LGG-AEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEVKVSCVIDAEDGDKALRAVCEAFELE 412 (587)
T ss_pred cCC-CcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEcHHHHHHHHHHHHHHhccC
Confidence 332 56888899999999997 88899999999999999999999999 49999999999999999999999999765
|
|
| >PRK06635 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-67 Score=560.06 Aligned_cols=393 Identities=33% Similarity=0.543 Sum_probs=340.6
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
|+++|+|||||+|.|++.++++++.|.... +.+++|||||++++||+|++..+...
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~---------------------- 58 (404)
T PRK06635 1 MALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVS---------------------- 58 (404)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhc----------------------
Confidence 568999999999999999999999999743 45789999999999999987532100
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (559)
...++..+|+++++||++|+.+++.+|+++|+++++++++|++++++++|+
T Consensus 59 -----------------------------~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~ 109 (404)
T PRK06635 59 -----------------------------PLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHG 109 (404)
T ss_pred -----------------------------cCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCC
Confidence 011456778999999999999999999999999999999999899988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCC
Q 008621 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (559)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (559)
++++...+...+.+ +++.+.|||++||+|.+ .+|.++|+||||||++|+++|.+|+|+++++||||||||++||
T Consensus 110 ~~~~~~~~~~~l~~-----~l~~~~ipVi~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP 183 (404)
T PRK06635 110 KARITDIDPSRIRE-----ALDEGDVVVVAGFQGVD-EDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDP 183 (404)
T ss_pred ceEeeecCHHHHHH-----HHhCCCEEEecCccEeC-CCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCC
Confidence 88876666554443 34678999999999999 4899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCC--CccceeeEEeeecCe
Q 008621 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--MSKAVLTSIVLKRNV 395 (559)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--~~~~~It~Is~~~~i 395 (559)
+++|+++++++++|+|+.+|+++|++++||+|++|++++|||++|+|+++| .+||+|..... +.+..+++|+..+++
T Consensus 184 ~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~-~~gT~i~~~~~~~~~~~~i~~I~~~~~v 262 (404)
T PRK06635 184 RIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSD-NPGTLITGEEEEIMEQPVVTGIAFDKDE 262 (404)
T ss_pred CCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCC-CCCCEEeeCCccccccCceEEEEecCCe
Confidence 999999999999999999999999999999999999999999999999998 68999987643 345579999999999
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-----CceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhcee
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIV 470 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-----e~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v 470 (559)
++|++.+ |.+.+|+++++|+.|+++||++++++++ +.+++|+++.++... +.+ .+++...++ .+..+
T Consensus 263 ~~Isv~g--~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~--a~~---~L~~~~~~~-~~~~i 334 (404)
T PRK06635 263 AKVTVVG--VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEK--ALE---LLEEVKDEI-GAESV 334 (404)
T ss_pred EEEEECC--CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHH--HHH---HHHHHHHHc-CcceE
Confidence 9999987 8889999999999999999999999886 467999998765321 111 222211111 23458
Q ss_pred ecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 471 NLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 471 ~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
++.+++++|+++|. +...||+++++|++|+++||||.++++ |+.+++|+|+++|.++|++.||++|+.
T Consensus 335 ~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~s--s~~~is~vv~~~d~~~a~~~Lh~~f~~ 403 (404)
T PRK06635 335 TYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIST--SEIKISVLIDEKYLELAVRALHEAFGL 403 (404)
T ss_pred EEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEe--cCCeEEEEEcHHHHHHHHHHHHHHHCC
Confidence 88899999999996 888899999999999999999999986 789999999999999999999999953
|
|
| >cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-66 Score=528.38 Aligned_cols=281 Identities=35% Similarity=0.514 Sum_probs=250.4
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCC-------cccHHHHHhhHhhhhcCcCcchhhhHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMG-------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g-------~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (559)
|.|+|||||||+|+++|++++++|... .++++||||||+ |+||.|+++++.+.+. .++.+.++.++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVvSA~~~~~~~~~~vTd~L~~~~~~~~~~----~~~~~~~~~i~~~ 75 (288)
T cd04245 1 MKVVKFGGSSLASAEQFQKVKAIVKAD-PERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLAG----EDTESIFEAIVDR 75 (288)
T ss_pred CEEEEECcCccCCHHHHHHHHHHHHhc-CCCEEEEEcCCCCCCCchhhHHHHHHHHHHHHhcC----cchHHHHHHHHHH
Confidence 589999999999999999999999965 467899999998 5999999988766442 2456789999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
|.+++++|..+.+.+.++.+.++++.+. ....+++.+|+|+|+||++|+.+|+.+|++.|+++.++|++++|++|++
T Consensus 76 h~~~~~~L~~~~~~~~~i~~~~~~l~~~---~~~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~ 152 (288)
T cd04245 76 YAEIADELGLPMSILEEIAEILENLANL---DYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTD 152 (288)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecC
Confidence 9999999987766555555555555542 2356789999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
+|+++.+...+..++.+.+ +.+.|||++||+|.+ .+|+++|||||||||+|+++|++|+|+++++|||||||||
T Consensus 153 ~~~~a~~~~~~~~~~~~~~-----~~~~v~Vv~Gf~g~~-~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvyt 226 (288)
T cd04245 153 EPGNAQILPESYQKIKKLR-----DSDEKLVIPGFYGYS-KNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYA 226 (288)
T ss_pred CccccccchhhHHHHHHHH-----hCCCEEEEeCccccC-CCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceEC
Confidence 9999888666665554433 457899999999999 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
+|||++|+|+++++|||+||.||+++|++||||+|+.|++++||||+|+|+++|+.+||+|.
T Consensus 227 aDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~~~GT~I~ 288 (288)
T cd04245 227 ANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLIV 288 (288)
T ss_pred CCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999999999999999999984
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. |
| >cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-66 Score=528.60 Aligned_cols=288 Identities=39% Similarity=0.558 Sum_probs=260.2
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHHh
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (559)
|+|+|||||||+|++++++++++|... ++++|||||||+|+||.|+++++.+.++.. .++...++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vVVVSA~~~vTd~L~~~~~~~~~~~~--~~~~~~l~~l~~~h~~~~~~ 77 (292)
T cd04258 1 MVVAKFGGTSVADYAAMLRCAAIVKSD-ASVRLVVVSASAGVTNLLVALADAAESGEE--IESIPQLHEIRAIHFAILNR 77 (292)
T ss_pred CEEEEECccccCCHHHHHHHHHHHhcc-CCCEEEEEeCCCCchHHHHHHHHHHhcCCc--chhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999875 567899999999999999999887655321 23455799999999999999
Q ss_pred cCCCHH---HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 162 LGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 162 L~~~~~---~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
|..+.+ .+...+++|+++++++.++++++++.+|+|+|+||++|+.+++++|+++|+++.++|++++ ++|+++|++
T Consensus 78 L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~ 156 (292)
T cd04258 78 LGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGR 156 (292)
T ss_pred hhcchhHHHHHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHe-EEecCCCcc
Confidence 987754 5888999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred ceeeecc-hHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCC
Q 008621 239 ADILEAT-YPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (559)
Q Consensus 239 a~i~~~~-~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (559)
++++... ..++.+.+.. + .++.|||+|||+|.+ .+|++|||||||||++|+++|.+|+|+++++|||||||||+||
T Consensus 157 a~~~~~~~~~~~~~~~~~-~-~~~~v~Vv~Gf~g~~-~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP 233 (292)
T cd04258 157 AAPDLNALAELAAKLLKP-L-LAGTVVVTQGFIGST-EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDP 233 (292)
T ss_pred ccccHHHHHHHHHHHHHH-h-hcCCEEEECCccccC-CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCC
Confidence 8875433 3344443332 2 356899999999999 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
+++|+|++++.|||+||.||+++|++|+||+|+.|+++++|||+|+|+++|+++||+|+
T Consensus 234 ~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~~~GT~I~ 292 (292)
T cd04258 234 RICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLIT 292 (292)
T ss_pred CCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999999999999999985
|
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. |
| >cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-66 Score=528.70 Aligned_cols=290 Identities=55% Similarity=0.830 Sum_probs=265.3
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcC-CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHHh
Q 008621 83 CVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (559)
Q Consensus 83 ~V~KFGGsSl~~~~~~~~va~iI~~~-~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (559)
+|+|||||||+|++++++++++|... .+++++||||||+|+||.|+++++.+.... ..++.+.++.++++|..++++
T Consensus 2 ~V~KFGGtSv~~~~~~~~v~~iI~~~~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~--~~~~~~~l~~i~~~h~~~~~~ 79 (298)
T cd04244 2 LVMKFGGTSVGSAERIRHVADLVGTYAEGHEVVVVVSAMGGVTDRLLLAAEAAVSGR--IAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHhhcCCCEEEEEeCCCCcHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999974 346889999999999999999887664321 235677899999999999999
Q ss_pred cCCCH------HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC
Q 008621 162 LGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (559)
Q Consensus 162 L~~~~------~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (559)
|..+. +.++.++++|+++++++..+++++++.+|+++|+||++|+.|++++|+++|++|.++++++++++|+++
T Consensus 80 l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~ 159 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDN 159 (298)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCc
Confidence 98753 458899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccC
Q 008621 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (559)
Q Consensus 236 ~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta 315 (559)
++++.+...+..++.+.+.. +++.+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|++++||||||||||+
T Consensus 160 ~~~a~~~~~~~~~i~~~l~~-ll~~~~vpVv~Gfig~~-~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~ 237 (298)
T cd04244 160 FGNARPLPATYERVRKRLLP-MLEDGKIPVVTGFIGAT-EDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTA 237 (298)
T ss_pred ccccccchhHHHHHHHHHHH-HhhcCCEEEEeCccccC-CCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 88877665566677776654 46778999999999998 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
||+.+|+|+++++|||+||.||+++|++|+||+|++||+++|||++|+|+++|+.+||+|+
T Consensus 238 dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~~~GT~I~ 298 (298)
T cd04244 238 DPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT 298 (298)
T ss_pred CCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCCCCCCEeC
Confidence 9999999999999999999999999999999999999999999999999999999999995
|
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. |
| >cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-65 Score=521.83 Aligned_cols=286 Identities=39% Similarity=0.617 Sum_probs=258.5
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (559)
|.|+|||||||+|+++|++++++|.... +.+++||||||+|+||.|+++++.+.+.. ..+...++.++++|..+++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vvVvSA~~gvTd~L~~~~~~~~~~~---~~~~~~l~~i~~~h~~~~~ 77 (294)
T cd04257 1 MKVLKFGGTSLANAERIRRVADIILNAAKQEQVAVVVSAPGKVTDLLLELAELASSGD---DAYEDILQELESKHLDLIT 77 (294)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCcHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999753 46789999999999999999988765422 2356679999999999999
Q ss_pred hcCCCH------HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 161 ELGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 161 ~L~~~~------~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
+|..+. +.|.+.+++|+++++++..+++++++.+|+|+|+||+||+.||+++|+++|+++.++|++++ ++|++
T Consensus 78 ~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~ 156 (294)
T cd04257 78 ELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDG 156 (294)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecC
Confidence 997653 35888999999999999999999999999999999999999999999999999999999996 89998
Q ss_pred CCCCceeee-cchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccc
Q 008621 235 DFTNADILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (559)
Q Consensus 235 ~~~~a~i~~-~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (559)
+|+++.+.. .+.+++.+.+. ..+.|||++||+|.+ .+|++|||||||||++|+++|.+|+|++++|||||||||
T Consensus 157 ~~~~a~~~~~~~~~~l~~~~~----~~~~v~Vv~Gfig~~-~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvy 231 (294)
T cd04257 157 GYLNAVVDIELSKERIKAWFS----SNGKVIVVTGFIASN-PQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVY 231 (294)
T ss_pred CCCceEechHhhHHHHHHHHh----cCCCEEEecCcccCC-CCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccC
Confidence 999888854 34454544332 227899999999998 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
|+||+.+|+|+++++|||+||.+|+++|++++||+|+.|++++|||++|+|+++|+.+||+|+
T Consensus 232 t~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~~~GT~I~ 294 (294)
T cd04257 232 SADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLIS 294 (294)
T ss_pred CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999999999985
|
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act |
| >cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=518.19 Aligned_cols=285 Identities=40% Similarity=0.644 Sum_probs=257.1
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHHh
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (559)
|+|+|||||||+|+++|++++++|....+.+++||||||+|+||.|+++++.+.+.. ..+...++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~vvVvSA~~gvTd~L~~~~~~a~~~~---~~~~~~l~~i~~~h~~~~~~ 77 (293)
T cd04243 1 MKVLKFGGTSVASAERIRRVADIIKSRASSPVLVVVSALGGVTNRLVALAELAASGD---DAQAIVLQEIRERHLDLIKE 77 (293)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCCCcHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999975456889999999999999999988765432 23444699999999999999
Q ss_pred cCCCHH------HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC
Q 008621 162 LGIDRS------IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (559)
Q Consensus 162 L~~~~~------~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (559)
|..+.. .+...+++|+++++++.++++++++.+|+|+|+||+||+.|++++|+++|+++.++|++++ +++++.
T Consensus 78 L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~ 156 (293)
T cd04243 78 LLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDG 156 (293)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHe-EEecCC
Confidence 987643 4888999999999999999999999999999999999999999999999999999999997 888888
Q ss_pred CCCceeeecc-hHHHHHHHhhchhcC-CcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccc
Q 008621 236 FTNADILEAT-YPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (559)
Q Consensus 236 ~~~a~i~~~~-~~~i~~~l~~~l~~~-~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (559)
++++.+.... ...+.+. ++. +.|||++||+|.+ .+|+++||||||||++|+++|.+|+|+++++||||||||
T Consensus 157 ~~~~~~~~~~s~~~~~~~-----~~~~~~v~Vv~Gfig~~-~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiy 230 (293)
T cd04243 157 FLNAVVDLKLSKERLAQL-----LAEHGKVVVTQGFIASN-EDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVY 230 (293)
T ss_pred CCcchhhhHHHHHHHHHH-----HhcCCCEEEecCccccC-CCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccC
Confidence 8887764432 3333332 233 7899999999999 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
|+||+++|+|++|++|+|+||.+|+++|++++||+|++|++++|||++|+|+++|+.+||+|+
T Consensus 231 t~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~~~GT~I~ 293 (293)
T cd04243 231 TADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLIS 293 (293)
T ss_pred CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999999999985
|
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK- |
| >cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=517.68 Aligned_cols=284 Identities=34% Similarity=0.550 Sum_probs=253.2
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
|+|+|||||||+|++++++++++|.... +++++||||||+|+||.|+++++.+.. ..+.+.++.+.++|.+++
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~-----~~~~~~l~~i~~~~~~~~ 75 (295)
T cd04259 1 WVVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALL-----DEHHSLFNAIQSRHLNLA 75 (295)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhc-----cChHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998642 357899999999999999998876643 125667999999999999
Q ss_pred HhcCCCH-HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 160 DELGIDR-SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 160 ~~L~~~~-~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
++|+.+. ..++..+++|+++++++.++++++++.+|+|+|+||+||+.||+++|+++|+++.++|++++ +++++++++
T Consensus 76 ~~L~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~~~~~~~~ 154 (295)
T cd04259 76 EQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGG 154 (295)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHh-eeecccccc
Confidence 9998654 36889999999999999999999999999999999999999999999999999999999998 777777754
Q ss_pred c-------eee-ecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 239 A-------DIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 239 a-------~i~-~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
+ ++. +.+..++.+.+ .+.+.|||+|||+|.+ .+|++|||||||||++|+++|.+|+|+++++|||||
T Consensus 155 ~~~~~~~a~v~~~~~~~~l~~~l----~~~~~v~Vv~GFig~~-~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~ 229 (295)
T cd04259 155 ETMNYLSARCESEYADALLQKRL----ADGAQLIITQGFIARN-AHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVP 229 (295)
T ss_pred cccccccceehhhhhHHHHHHHH----hcCCceeEeCCceeeC-CCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 3 331 22334444333 2235799999999999 589999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
||||+||+.+|+|+++++|||+||.+|+++|++++||+|++|++++|||++|+|+++|+.+||+|+
T Consensus 230 Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~~~GT~I~ 295 (295)
T cd04259 230 GLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTLIT 295 (295)
T ss_pred ccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCCCCCcEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. |
| >cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=517.99 Aligned_cols=288 Identities=32% Similarity=0.500 Sum_probs=246.2
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCC------cccHHHHHhhHhhhhcCcCcchhhhHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMG------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g------~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~ 153 (559)
|+|+|||||||+|++ ++++++|... .+.+++||||||+ |+||.|+++++.+.... ..++.+.++.+++
T Consensus 2 ~~V~KFGGtSv~~~~--~~v~~~i~~~~~~~~~~vVVvSA~~~~~~~~gvTd~L~~~~~~a~~~~--~~~~~~~l~~i~~ 77 (306)
T cd04247 2 WVVQKFGGTSVGKFP--DNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALDAQ--EKAFHDIVEDIRS 77 (306)
T ss_pred CEEEEeCchhhccHH--HHHHHHHHhhhccCCceEEEEeccccCCCccChHHHHHHHHHHHHhhc--cccHHHHHHHHHH
Confidence 789999999999984 7999866642 2457899999998 99999999988765321 2467788999999
Q ss_pred HHHHHHHhcCCCH-------HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEeccc
Q 008621 154 LHHRTVDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAF 226 (559)
Q Consensus 154 ~~~~~~~~L~~~~-------~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~ 226 (559)
+|.+++++|..+. +.+++.+++|++++.++.++++++++.+|+|+|+||+||+.||+++|+++|+++.++|++
T Consensus 78 ~h~~~~~~L~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~ 157 (306)
T cd04247 78 DHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLS 157 (306)
T ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHH
Confidence 9999999997653 247788999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCceeeecchHHHHHHHhhchhc-CCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEE
Q 008621 227 DIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (559)
Q Consensus 227 ~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~-~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i 305 (559)
++ +.++.. ...........+.+.+...+.+ ++.|||+|||+|.+ .+|++||||||||||+|+++|.+|+|++++|
T Consensus 158 ~~-i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~-~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i 233 (306)
T cd04247 158 HI-VDLDFS--IEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNV-PGGLLSQIGRGYTDLCAALCAVGLNADELQI 233 (306)
T ss_pred Hh-eecCCC--ccccccchhHHHHHHHHHHhhccCCceEEeeccEecC-CCCCeEEeCCCchHHHHHHHHHHcCCCEEEE
Confidence 96 444332 1111111112233333332222 46799999999998 5899999999999999999999999999999
Q ss_pred eeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEec
Q 008621 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377 (559)
Q Consensus 306 ~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~ 377 (559)
|||||||||+||+++|+|++|++|||+||.||+++|++||||+|++||+++||||+|+|+|+|+++||+|.+
T Consensus 234 ~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~~~GT~I~~ 305 (306)
T cd04247 234 WKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVIYP 305 (306)
T ss_pred eecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCCCCCcEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976
|
Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. |
| >PRK08373 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-61 Score=498.30 Aligned_cols=323 Identities=29% Similarity=0.467 Sum_probs=268.4
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
.+|+|+|||||||++ ++++++++|.... +++++||||||+|+||.|+++++.+ ..+.++.++++|.++
T Consensus 3 ~~m~V~KFGGsSv~~--~~~~v~~ii~~~~~~~~vvVVVSA~~gvTd~L~~l~~~~---------~~~~l~~i~~~h~~~ 71 (341)
T PRK08373 3 EKMIVVKFGGSSVRY--DFEEALELVKYLSEENEVVVVVSALKGVTDKLLKLAETF---------DKEALEEIEEIHEEF 71 (341)
T ss_pred CCCEEEEECCcchHh--HHHHHHHHHHHHhcCCCEEEEecCCchHHHHHHHHHHHH---------hHHHHHHHHHHHHHH
Confidence 467999999999998 5999999998533 4578999999999999999987643 245789999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
+++|+.+.. .+.++|++.++.+..+ .+++.+|+|+|+||++|+.+++.+|+++|+++.+++++++ +.|+++|++
T Consensus 72 ~~~L~~~~~---~~~~~l~~~~~~~~~~--~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~ 145 (341)
T PRK08373 72 AKRLGIDLE---ILSPYLKKLFNSRPDL--PSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGN 145 (341)
T ss_pred HHHhccchh---hHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccc
Confidence 999987653 3445566666543322 3578899999999999999999999999999999999998 888888988
Q ss_pred ceeeec-chHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCC
Q 008621 239 ADILEA-TYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (559)
Q Consensus 239 a~i~~~-~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (559)
+++... +..++ +.+. .+++.+.|||++||+| + .+|.++|||||||||+|+++|++|+|++++||||||||||+||
T Consensus 146 a~i~~~~s~~~~-~~l~-~~l~~g~VpVv~Gf~g-~-~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP 221 (341)
T PRK08373 146 AFIDIKKSKRNV-KILY-ELLERGRVPVVPGFIG-N-LNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADP 221 (341)
T ss_pred eeechhhhhhhH-HHHH-HHHhCCcEEEEeCCcc-C-CCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCC
Confidence 887322 11222 2233 2457889999999999 7 4899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEeeecCeEE
Q 008621 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397 (559)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~~~~ial 397 (559)
+++|+|+++++|||+||.||+++|++++||+|++|+++ |||++|+|+|+| .+||+|.+... ....++++ +.+|.+.
T Consensus 222 ~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~Ipi~v~~t~~~-~~GT~I~~~~~-~~~~~~~~-~~~~~~~ 297 (341)
T PRK08373 222 KLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-KIPIIFGRTRDW-RMGTLVSNESS-GMPILVHK-VGEEHAE 297 (341)
T ss_pred CCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-CCcEEEecCCCC-CCCcEEecCCC-CCceEEEE-ecCCEEE
Confidence 99999999999999999999999999999999999999 999999999999 58999987643 23568898 8999999
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCc
Q 008621 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444 (559)
Q Consensus 398 ItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~ 444 (559)
|++.+. ...+++ . .+.-++..+.+.+++++
T Consensus 298 i~~~~~--~~~~~~-------------~--~~~~~~~~~~~~~~~~~ 327 (341)
T PRK08373 298 ILVVGV--EEEIGY-------------P--VYEEGEFWFKIKVPKEE 327 (341)
T ss_pred EEEecc--CCCCCC-------------C--ceecCCceEEEecCHHH
Confidence 999852 222321 1 24456677888887653
|
|
| >TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-58 Score=473.15 Aligned_cols=288 Identities=31% Similarity=0.467 Sum_probs=244.4
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (559)
|+|+|||||||+++ +++++++|.... +.+++||||||+|+||.|+++++.+ ..+.++.++++|.++++
T Consensus 1 m~V~KFGGsSv~~~--~~~v~~ii~~~~~~~~~vVVVSA~~gvTd~L~~~~~~~---------~~~~l~~i~~~h~~~~~ 69 (327)
T TIGR02078 1 MIVVKFGGSSVRYA--FEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTF---------DKSAALEIEEIYEEFAK 69 (327)
T ss_pred CEEEEECCcchHHH--HHHHHHHHHHHhcCCCEEEEeCCCcchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 58999999999986 999999998643 4578999999999999999976421 13568899999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCce
Q 008621 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (559)
Q Consensus 161 ~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~ 240 (559)
+|+.+.+.+.+.++++.+. .. -.++..+|+|+|+||++|+.|+++ |+++.+++++++ ++|++.|+++.
T Consensus 70 ~L~~~~~~~~~~l~~~~~~---~~---l~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~-i~t~~~~~~a~ 137 (327)
T TIGR02078 70 ELGVDLNILSPYLKELFNP---PD---LPKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDI-FFAKGDFGNAF 137 (327)
T ss_pred HhccchhhhHHHHHHHHhh---hc---cCChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHH-hccCCcCCcee
Confidence 9998765555555555443 11 235678999999999999999986 899999999998 88888999988
Q ss_pred eee-cchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCC
Q 008621 241 ILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (559)
Q Consensus 241 i~~-~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (559)
++. .+..++.. +. .+++.+.|||++||+| + .+|.++||||||||++|+++|.+|+|+++++|||||||||+||++
T Consensus 138 ~~~~~~~~~~~~-l~-~~l~~g~IpVv~Gf~~-~-~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~ 213 (327)
T TIGR02078 138 IDIKKSKRNAKI-LY-EVLESGKIPVIPGFYG-N-LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKL 213 (327)
T ss_pred echhhhHhhHHH-HH-HHHhCCcEEEEeCCcc-C-CCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCc
Confidence 753 33333332 33 2356789999999999 7 489999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEeeecC-eEEE
Q 008621 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRN-VTML 398 (559)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~~~~-ialI 398 (559)
+|+|++++++||+||.+++++|++++||+|++|++++|||++|+|+++|+ +||+|+...+. ...|++++. +++|
T Consensus 214 v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~-~GT~I~~~~~~----~~~i~~~~~~i~~v 288 (327)
T TIGR02078 214 VPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR-MGTLISNRSSG----MPLMVYKDGELLVV 288 (327)
T ss_pred CCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC-CCcEEecCCCC----CcEEEEccCcEEEE
Confidence 99999999999999999999999999999999999999999999999996 89999875422 345888888 9999
Q ss_pred EEE
Q 008621 399 DIV 401 (559)
Q Consensus 399 tV~ 401 (559)
.+.
T Consensus 289 ~~~ 291 (327)
T TIGR02078 289 NVR 291 (327)
T ss_pred EEe
Confidence 984
|
This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between. |
| >cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-58 Score=464.47 Aligned_cols=279 Identities=28% Similarity=0.392 Sum_probs=224.9
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCCC--CCcEEEEcCCCcccHHHHHhhHhh---hhcCc--CcchhhhHHHHHHHHH
Q 008621 83 CVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKA---VSCGV--TNISCIDELSFVKDLH 155 (559)
Q Consensus 83 ~V~KFGGsSl~~~~~~~~va~iI~~~~~--~~~vVVVSA~g~~Td~L~~~~~~~---~~~~~--~~~~~~~~l~~i~~~~ 155 (559)
.|+|||||||++.+.++. ++|..... .++|+||||++|+||.|++.-+.. +...+ .+..|.+.|+.+.++|
T Consensus 2 ~V~K~GGTSms~~~~~~d--~i~~~~~~~~~~rv~VVSA~~gvT~~Lle~k~t~~~gv~~~~~~~~~~~~~al~~~~~~~ 79 (304)
T cd04248 2 TVEKIGGTSMSAFGAVLD--NIILKPDSDLYGRVFVVSAYSGVTNALLEHKKTGAPGIYQHFVDADEAWREALSALKQAM 79 (304)
T ss_pred ceeeecCcccccHHHHhh--hHhcCCcccCccEEEEEECCccchHHHHHhhhcCCcchhHHHhcCchHHHHHHHHHHHHH
Confidence 699999999999998888 66663222 368999999999999999731110 00001 1244788899999999
Q ss_pred HHHHHhcCCCH-------HHHH-------HHHHHHHHHH-HhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCce
Q 008621 156 HRTVDELGIDR-------SIIA-------THLEELEQLL-KGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKA 220 (559)
Q Consensus 156 ~~~~~~L~~~~-------~~i~-------~~~~~l~~~l-~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a 220 (559)
..+..+|..++ +++. .++.++.+++ .|+..+++++++.+|+|+|+||++|+.+++.+|+++|++|
T Consensus 80 ~~~~~~l~~~~~~~~~a~~~i~~r~~~~~~~l~~~~~~~~~g~~~l~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A 159 (304)
T cd04248 80 LKINEAFADIGLDVEQADAFIGARIQDARACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNA 159 (304)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCe
Confidence 88887776441 2233 3444555555 5788889999999999999999999999999999999999
Q ss_pred EEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCc
Q 008621 221 RQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGL 300 (559)
Q Consensus 221 ~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A 300 (559)
.++|...+ ...+.+. ....+.+.+.. +...+.|||+|||.+ + .+|+++|||||||||||++||++|+|
T Consensus 160 ~~vD~~~~--~~~~~~t-------~~~~i~~~~~~-~~~~~~v~IvtGF~~-~-~~G~itTLGRGGSDyTAs~iAa~l~A 227 (304)
T cd04248 160 RFVDLSGW--RDSGDMT-------LDERISEAFRD-IDPRDELPIVTGYAK-C-AEGLMREFDRGYSEMTFSRIAVLTGA 227 (304)
T ss_pred EEECcccc--cccCCCC-------cHHHHHHHHHh-hccCCcEEEeCCccC-C-CCCCEEEcCCCcHHHHHHHHHHHcCC
Confidence 99887654 1111111 12344444443 223567999999954 6 48999999999999999999999999
Q ss_pred CcEEEeeCCcccccCCCCCC--CCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 301 QEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 301 ~~l~i~TDV~GV~taDP~~v--~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
++++|||||+ |||+|||+| ++|++|++|||+||.||+++|++||||+|++|++++||||+|+|+|+|+++||+|+
T Consensus 228 ~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P~~~GTlIt 304 (304)
T cd04248 228 SEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGTLIT 304 (304)
T ss_pred CEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCCCCCCceeC
Confidence 9999999996 999999999 68999999999999999999999999999999999999999999999999999995
|
Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. |
| >cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=381.53 Aligned_cols=237 Identities=38% Similarity=0.607 Sum_probs=211.1
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
++|+||||+++.|++.++++++.|.... +.+++||+||+++.|++|++......
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------------------------ 56 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------------------------ 56 (239)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------------------------
Confidence 4799999999999999999999998753 45789999999999999987532110
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCc
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (559)
+..+.+.+|.++++||++|+.+++++|+++|++++++++.|+++++.++|+++
T Consensus 57 ---------------------------~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~ 109 (239)
T cd04261 57 ---------------------------PRPPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKA 109 (239)
T ss_pred ---------------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcc
Confidence 12245677889999999999999999999999999999999988998888777
Q ss_pred eeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCC
Q 008621 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (559)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (559)
++...+...+.+ +++.+.|||++||+|.+ .+|.++++|||+||++|+++|.+|+|+++++||||||||++||+.
T Consensus 110 ~i~~~~~~~l~~-----ll~~~~ipVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~ 183 (239)
T cd04261 110 RIIDIDPDRIRE-----LLEEGDVVIVAGFQGIN-EDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRI 183 (239)
T ss_pred eechhhHHHHHH-----HHHcCCeEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCC
Confidence 775555443332 35678999999999999 489999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
+|+++++++|+|+|+.+|+++|++++||+|++|++++|||++|+|+++|+ +||+|+
T Consensus 184 ~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~-~gt~i~ 239 (239)
T cd04261 184 VPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE-PGTLIT 239 (239)
T ss_pred CCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC-CCcEeC
Confidence 99999999999999999999999999999999999999999999999999 999985
|
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and |
| >cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=379.68 Aligned_cols=225 Identities=49% Similarity=0.860 Sum_probs=198.7
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcC-CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~-~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (559)
|+|+||||||+++++.+++++++|... .+.++|||+||++++|+.|++++
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~t~~l~~~~----------------------------- 51 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMGGVTDLLIELA----------------------------- 51 (227)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhhcCCCEEEEEcCCCcccHHHHHHH-----------------------------
Confidence 689999999999999999999999975 24578999999999999986530
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCce
Q 008621 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (559)
Q Consensus 161 ~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~ 240 (559)
.++++||.+|+.+++++|+++|+++.+++++++++.+++.+...+
T Consensus 52 -----------------------------------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~ 96 (227)
T cd04234 52 -----------------------------------LLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAAR 96 (227)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhh
Confidence 578999999999999999999999999999998555544323333
Q ss_pred eeecchHHHHHHHhhchhcC-CcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCC
Q 008621 241 ILEATYPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (559)
Q Consensus 241 i~~~~~~~i~~~l~~~l~~~-~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (559)
+...+...+. .+++. +.|||++||+|.+ ++|.++++||||||++|+++|.+|+|+++++|||||||||+||+.
T Consensus 97 ~~~~~~~~l~-----~~l~~~~~vpVv~g~i~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~ 170 (227)
T cd04234 97 IIEISYERLK-----ELLAEIGKVPVVTGFIGRN-EDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170 (227)
T ss_pred HHHHHHHHHH-----HHHhhCCCEEEecCceecC-CCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCC
Confidence 3333333332 23566 8999999999999 489999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
+|+++++++++|+|+.+|+++|+++|||+|+++++++|||++|+|+++|+.+||+|+
T Consensus 171 ~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~~~gT~I~ 227 (227)
T cd04234 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT 227 (227)
T ss_pred CCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999984
|
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd |
| >cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-47 Score=378.22 Aligned_cols=237 Identities=39% Similarity=0.629 Sum_probs=210.5
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
|+|+|||||++.|++.++++++.|.... +.+++||+||+++.+++|++......
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~------------------------ 56 (239)
T cd04246 1 IIVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVS------------------------ 56 (239)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhc------------------------
Confidence 6899999999999999999999998753 46789999999999999987532100
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCc
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (559)
...+...+|.++++||++|+.+++++|+++|++++++++.+.++++.++|+++
T Consensus 57 ---------------------------~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~ 109 (239)
T cd04246 57 ---------------------------PRPSPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNA 109 (239)
T ss_pred ---------------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCce
Confidence 01245677889999999999999999999999999999999888988888877
Q ss_pred eeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCC
Q 008621 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (559)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (559)
++...+...+. .+++++.|||++||+|.+ .+|.++++||||||++|+++|.+|+|+++++||||||||++||+.
T Consensus 110 ~~~~~~~~~l~-----~ll~~g~ipVi~g~~~~~-~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~ 183 (239)
T cd04246 110 RIIDIDPKRIL-----EALEEGDVVVVAGFQGVN-EDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRI 183 (239)
T ss_pred eechhhHHHHH-----HHHhcCCEEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCC
Confidence 77555444333 235678999999999998 489999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
+|+++++++|+|+|+.+|+++|++++||+|++|++++|||++|+|+++|+ +||+|+
T Consensus 184 ~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~-~gt~i~ 239 (239)
T cd04246 184 VPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN-PGTLIT 239 (239)
T ss_pred CCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC-CCcEeC
Confidence 99999999999999999999999999999999999999999999999999 999985
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati |
| >cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=376.57 Aligned_cols=237 Identities=34% Similarity=0.604 Sum_probs=207.4
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcc-----cHHHHHhhHhhhhcCcCcchhhhHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKT-----TNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~-----Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (559)
++|+|||||++.|++.++++++.|.... +.+++||+||+|+. |+.|.+...
T Consensus 1 ~~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~---------------------- 58 (244)
T cd04260 1 IIVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVY---------------------- 58 (244)
T ss_pred CEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHH----------------------
Confidence 3799999999999999999999999753 34789999998773 555443210
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
..+ ...++..+|.++++||.+++.+++++|+++|+++.++++.+.++++.+
T Consensus 59 ------~~~-----------------------~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~ 109 (244)
T cd04260 59 ------AEN-----------------------SDISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDD 109 (244)
T ss_pred ------hhc-----------------------CCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecC
Confidence 000 123567789999999999999999999999999999999999999999
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
+++++++...+...+.+ +++.+.|||++||+|.++ +|+++++||||||++|+++|.+|+|+++++||||||||+
T Consensus 110 ~~~~~~v~~~~~~~l~~-----ll~~g~VPVv~g~~~~~~-~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~ 183 (244)
T cd04260 110 NYSNAKIIKVNPKKILS-----ALKEGDVVVVAGFQGVTE-DGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMT 183 (244)
T ss_pred CCCceeeeccCHHHHHH-----HHhCCCEEEecCCcccCC-CCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCc
Confidence 88877766555554432 356789999999999994 899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEe
Q 008621 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (559)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (559)
+||+.+|++++|++|+|+|+.+|+++|++++||+|++++++++||++|+|+++|+ +||+|+
T Consensus 184 ~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~-~gt~i~ 244 (244)
T cd04260 184 ADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN-PGTLIT 244 (244)
T ss_pred CCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC-CCCEeC
Confidence 9999999999999999999999999999999999999999999999999999998 999985
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet |
| >cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=304.46 Aligned_cols=237 Identities=40% Similarity=0.606 Sum_probs=199.1
Q ss_pred EEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHHh
Q 008621 84 VMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (559)
Q Consensus 84 V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (559)
|+|||||++.+.+.++++++.|.... +.++|+|+||+++.|+.+.+.....
T Consensus 1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~--------------------------- 53 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL--------------------------- 53 (248)
T ss_pred CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhh---------------------------
Confidence 78999999999999999999999752 4578999999999999987653210
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC-ce
Q 008621 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN-AD 240 (559)
Q Consensus 162 L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~-a~ 240 (559)
.+..+ ...+....+.++++||.+++.++.++|+++|+++.++++.++.+.+. +++. ..
T Consensus 54 ----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~-~~~~~g~ 112 (248)
T cd02115 54 ----------------GYARG----LRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASP-NQGHVGK 112 (248)
T ss_pred ----------------hhhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeC-CCCCccc
Confidence 00011 23467788999999999999999999999999999999999855544 4443 44
Q ss_pred eeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCC
Q 008621 241 ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320 (559)
Q Consensus 241 i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v 320 (559)
+...+...+.+ +++.+.|||++||.+.+. + +..+++|++||++|+.+|.+|+|+++++||||||||++||+++
T Consensus 113 ~~~~~~~~l~~-----~l~~~~ipVv~g~~~~~~-~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~ 185 (248)
T cd02115 113 ITKVSTDRLKS-----LLENGILPILSGFGGTDE-K-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKV 185 (248)
T ss_pred ceeeCHHHHHH-----HHhCCcEEEecCeEeccC-C-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcC
Confidence 45555554443 346789999999988763 4 6788999999999999999999999999999999999999999
Q ss_pred CCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCC--------CCCCCeEE
Q 008621 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN--------PNAPGTLI 375 (559)
Q Consensus 321 ~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~--------p~~~GT~I 375 (559)
|++++|++|+|+|+.++++.|+.++||+++.++.++++|++|.|+++ +++.||+|
T Consensus 186 ~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~I 248 (248)
T cd02115 186 PDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGALALFTPDGGGTLI 248 (248)
T ss_pred CcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999988 56677765
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. |
| >PRK12314 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=277.68 Aligned_cols=227 Identities=22% Similarity=0.311 Sum_probs=181.2
Q ss_pred CcceEEEEeCccccC------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 79 KQLTCVMKFGGSSLA------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~------~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
.|+++|+||||||+. +.++++++++.|.... +.++|+|+||+++.+..++....
T Consensus 8 ~~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~------------------ 69 (266)
T PRK12314 8 NAKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDK------------------ 69 (266)
T ss_pred hCCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeecccc------------------
Confidence 367899999999999 7899999999998643 34567788998888876654210
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
...+...++.+++.||.+++.++..+|+++|+++ +|+ +
T Consensus 70 ------------------------------------~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~-l 107 (266)
T PRK12314 70 ------------------------------------RPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVV-----AQI-L 107 (266)
T ss_pred ------------------------------------CCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEE-E
Confidence 0012234688999999999999999999999974 666 8
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeec----CCcchhHHHHHHHHcCcCcEEEe
Q 008621 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG----RGGSDLTATTIGKALGLQEIQVW 306 (559)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlg----RgGSD~tAa~lA~~L~A~~l~i~ 306 (559)
+|.++|.+.+.. .+..+.+. .|++.|.|||+.+ ++.+++.+ ||++|++|++||.+|+|+.++||
T Consensus 108 lT~~~~~~~~~~----~~~~~~l~-~ll~~g~IPVv~~-------nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liil 175 (266)
T PRK12314 108 LTRDDFDSPKSR----ANVKNTFE-SLLELGILPIVNE-------NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIIL 175 (266)
T ss_pred EecccccchHHH----HHHHHHHH-HHHHCCCEEEEcC-------CCCeeeccccceecchHHHHHHHHHHhCCCEEEEE
Confidence 888888766542 23333343 3567899999943 45566666 89999999999999999999999
Q ss_pred eCCcccccCCCCCCCCCccccccCH--HHHHHHHHc-------CCCcchHhHHHHHHhCCCCEEEecCCCCC--------
Q 008621 307 KDVDGVLTCDPNIHPHAKPVPYLTF--DEAAELAYF-------GAQVLHPQSMRPAREGDIPVRVKNSYNPN-------- 369 (559)
Q Consensus 307 TDV~GV~taDP~~v~~a~~i~~ls~--~Ea~eLa~~-------Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~-------- 369 (559)
|||||||++||+.+|+|++|+.++| .|..+++.. |..+.|++++..+.+.|+|++|.|+++|+
T Consensus 176 TDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g 255 (266)
T PRK12314 176 SDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEG 255 (266)
T ss_pred eCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcC
Confidence 9999999999999999999999997 666666543 45677889999999999999999988773
Q ss_pred -CCCeEEec
Q 008621 370 -APGTLIRR 377 (559)
Q Consensus 370 -~~GT~I~~ 377 (559)
..||+|.+
T Consensus 256 ~~~GT~i~~ 264 (266)
T PRK12314 256 ESIGTLFAP 264 (266)
T ss_pred CCCceEEcc
Confidence 46999865
|
|
| >PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.6e-33 Score=275.71 Aligned_cols=233 Identities=35% Similarity=0.455 Sum_probs=179.6
Q ss_pred ceEEEEeCccccCCH--HHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASA--ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~--~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
+++|+|||||++.+. + ++++++.|.... ...++|||||+|+.+|.+++........ .. ..+|..
T Consensus 1 k~~ViK~GGs~l~~~~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~-------~~-----~~r~~~ 67 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKF-------VD-----GSRVTD 67 (242)
T ss_dssp SEEEEEE-HHGHSSHSHH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSE-------ET-----HHCHBH
T ss_pred CeEEEEECchhhCCchHH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCccc-------ch-----hhhhhh
Confidence 579999999999998 7 999999998643 3466799999999999998763211100 00 001111
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (559)
....+.. -.....+|.+ ....|.+++.|+.+++.++...+.+.|+.+...++.
T Consensus 68 ~~~~~~~----~~~~~~~l~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 120 (242)
T PF00696_consen 68 IETGLII----TMAAAAELNR------------DALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDAR----------- 120 (242)
T ss_dssp HHHHHHH----HHHHHHHHHH------------HHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEESS-----------
T ss_pred hhhhHHH----HHHHhhcccc------------chhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhhh-----------
Confidence 1000000 0001111111 467788999999999999999999988877666543
Q ss_pred CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCC
Q 008621 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (559)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (559)
..+...+.+ +++++.|||++||.+.+ .+|++++++++++|++|+.||.+|+|+++++||||||||++||
T Consensus 121 -----~~~~~~i~~-----~l~~~~ipVv~g~~~~~-~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP 189 (242)
T PF00696_consen 121 -----EVDKEAIRE-----LLEQGIIPVVSGFAGID-DDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADP 189 (242)
T ss_dssp -----EEHHHHHHH-----HHHTTSEEEEESEEEEE-TTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSST
T ss_pred -----hhHHHHHHH-----HHHCCCEEEEeCCcccC-CCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCC
Confidence 112233332 34578999999999888 4899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHH------HcCCCcchHhHHHHHHhCCCCEEEec
Q 008621 318 NIHPHAKPVPYLTFDEAAELA------YFGAQVLHPQSMRPAREGDIPVRVKN 364 (559)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa------~~Ga~vlhp~a~~~a~~~~Ipv~I~n 364 (559)
+.+|+++++++|+|+|+.+|+ +.|++++||.|+++++++++|++|.|
T Consensus 190 ~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 190 RIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp TTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 999999999999999999999 89999999999999999999999986
|
In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A .... |
| >cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=266.76 Aligned_cols=221 Identities=24% Similarity=0.395 Sum_probs=174.7
Q ss_pred EEEEeCccccCCHH------HHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHH
Q 008621 83 CVMKFGGSSLASAE------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (559)
Q Consensus 83 ~V~KFGGsSl~~~~------~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (559)
+|+|||||++.+.+ .++++++.|.+.. +.+.|+|+||+++.+...+..
T Consensus 2 iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~------------------------ 57 (251)
T cd04242 2 IVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGL------------------------ 57 (251)
T ss_pred EEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhcc------------------------
Confidence 79999999999876 9999999998643 345677888877766321110
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
.. +......++.++++||..++.+++.+|+++|+++ +++ ++|++
T Consensus 58 ----------~~--------------------~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~-----~q~-l~t~~ 101 (251)
T cd04242 58 ----------EK--------------------RPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKV-----AQI-LLTRD 101 (251)
T ss_pred ----------Cc--------------------CCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEE-EEehh
Confidence 00 0001234578999999999999999999999996 344 67877
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceee--ecCCcchhHHHHHHHHcCcCcEEEeeCCccc
Q 008621 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (559)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~t--lgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (559)
+|.++.. +.+..+.+ ..|++.+.|||+.+ +|.+++ ++||++|++|+.+|.+|+|++++||||||||
T Consensus 102 ~~~~~~~----~~~~~~~i-~~ll~~g~iPVv~~-------~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGv 169 (251)
T cd04242 102 DFEDRKR----YLNARNTL-ETLLELGVIPIINE-------NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGL 169 (251)
T ss_pred HhcchHH----HHHHHHHH-HHHHHCCCEEEEcC-------CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEE
Confidence 7765542 22222333 34567899999943 355655 8999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccC--HHHHHHHH-----HcCCCcchH--hHHHHHHhCCCCEEEecCCCCC---------CCCeE
Q 008621 313 LTCDPNIHPHAKPVPYLT--FDEAAELA-----YFGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------APGTL 374 (559)
Q Consensus 313 ~taDP~~v~~a~~i~~ls--~~Ea~eLa-----~~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~ 374 (559)
|++||+.+|++++|++++ ++|+.+++ .+|..+||| +++..+.++|+|++|.|++.|+ ..||+
T Consensus 170 y~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~ 249 (251)
T cd04242 170 YDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTL 249 (251)
T ss_pred EeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeE
Confidence 999999999999999999 99999996 678999999 6899999999999999998774 46777
Q ss_pred E
Q 008621 375 I 375 (559)
Q Consensus 375 I 375 (559)
|
T Consensus 250 i 250 (251)
T cd04242 250 F 250 (251)
T ss_pred e
Confidence 6
|
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir |
| >PRK00358 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=252.51 Aligned_cols=212 Identities=25% Similarity=0.364 Sum_probs=161.2
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 81 ~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
+++|+|||||++. +.+.++++++.|.+.. +.++++|+|+ |.....+.
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gG-G~~a~~~~----------------------- 56 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGG-GNIFRGYI----------------------- 56 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHHHH-----------------------
Confidence 3689999999997 6789999999999753 2355666663 32211110
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
.. .++ .+....|++.+.++++|+.+++.+|+.+|+++..+++.+.+.+
T Consensus 57 -----~~--~~~-------------------------~~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~ 104 (231)
T PRK00358 57 -----GA--AAG-------------------------MDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQV 104 (231)
T ss_pred -----Hh--hcC-------------------------CChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccc
Confidence 00 011 1223457788889999999999999999999987776554333
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
+. .+ .. +.+. .+++++.|||++||.+.. + +.||++|+++|.+|+|+++++||||||
T Consensus 105 ~~-~~--------~~----~~~~-~~l~~g~vPVv~g~~~~~---~-------~ssD~~A~~lA~~l~A~~li~~tdVdG 160 (231)
T PRK00358 105 AE-PY--------IR----RRAI-RHLEKGRVVIFAAGTGNP---F-------FTTDTAAALRAEEIGADVLLKATNVDG 160 (231)
T ss_pred cC-cc--------cH----HHHH-HHHHCCCEEEEECCCCCC---C-------CCchHHHHHHHHHcCCCEEEEeeCcCc
Confidence 21 10 11 2233 345788999999875421 1 238999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEE
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI 375 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I 375 (559)
||++||+.+|+|++|++++|+|+.++ |++++||+++++|.++|+|++|.|+++|+ ..||+|
T Consensus 161 Vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 230 (231)
T PRK00358 161 VYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLV 230 (231)
T ss_pred eEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEe
Confidence 99999999999999999999998777 99999999999999999999999998874 357776
|
|
| >PRK14557 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=252.20 Aligned_cols=218 Identities=24% Similarity=0.312 Sum_probs=169.5
Q ss_pred cceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~-------~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
.+.+|+||||+++.+ .++++++++.|.... +.+++||||| | |.+..-
T Consensus 4 ~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGg-G---n~~rg~-------------------- 59 (247)
T PRK14557 4 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-G---NIFRGH-------------------- 59 (247)
T ss_pred ccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECC-c---HHHHHH--------------------
Confidence 457999999999987 789999999998642 3567888887 3 444310
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
.++.++. +....|++.++||++|+.+++.+|++. ++++.++
T Consensus 60 -------~a~~~~~-------------------------~~~~~D~ig~~g~~lna~ll~~~l~~~-------~~~~~~i 100 (247)
T PRK14557 60 -------LAEEWGI-------------------------DRVEADNIGTLGTIINSLMLRGVLTSK-------TNKEVRV 100 (247)
T ss_pred -------HHHhcCC-------------------------ChHHHHHHHHHHHHHHHHHHHHHHHhh-------hCCceeE
Confidence 0111221 234569999999999999999999984 4556678
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEee-CC
Q 008621 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DV 309 (559)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~T-DV 309 (559)
+|+..+.... ..... .++.+. +++|.|||++||+|.. ..+ +|++|+++|..++|+.+++|| ||
T Consensus 101 ~t~~~~~~~~-~~~~~----~~~~~~-l~~g~VvV~~G~~g~~----~~s------tD~lAallA~~l~Ad~li~~ttdV 164 (247)
T PRK14557 101 MTSIPFNAVA-EPYIR----LRAVHH-LDNGYIVIFGGGNGQP----FVT------TDYPSVQRAIEMNSDAILVAKQGV 164 (247)
T ss_pred Eecccccccc-chhhH----HHHHHH-HhCCCEEEEECCcCCC----ccC------hHHHHHHHHHHhCCCEEEEecCCc
Confidence 8877665321 11111 223332 4678899999998842 233 899999999999999999995 99
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEecCC
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRSR 379 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~~ 379 (559)
|||||+||+.+|+|++|++++|+|+. +.+.++|||+|+++|.++|||++|.|+.+|+ ..||+|.+..
T Consensus 165 dGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 165 DGVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA 240 (247)
T ss_pred CEeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence 99999999999999999999999884 5688999999999999999999999998874 4799998654
|
|
| >cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=252.31 Aligned_cols=210 Identities=25% Similarity=0.357 Sum_probs=163.9
Q ss_pred EEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHH
Q 008621 83 CVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (559)
Q Consensus 83 ~V~KFGGsSl~~------~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (559)
+|+|||||++.+ .+.++++++.|.+.. +.++++|+|| |...+.....
T Consensus 2 iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~gg-G~~a~~~~~~------------------------ 56 (229)
T cd04239 2 IVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGG-GNIARGYIAA------------------------ 56 (229)
T ss_pred EEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-ChHHhhHHHh------------------------
Confidence 799999999988 799999999998642 2355666665 4433332110
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
.+ ..++...|++.+.||++|+.+|+.+|+++|+++..+++.+++.++.
T Consensus 57 ------~~-------------------------~~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~- 104 (229)
T cd04239 57 ------AR-------------------------GMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE- 104 (229)
T ss_pred ------hc-------------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc-
Confidence 00 0123346888899999999999999999999999999887532211
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
. .+.. .+. .+++.+.|||++||.|.. . +.||++|+++|.+|+|+++++||||||||+
T Consensus 105 ~--------~~~~----~l~-~~l~~g~ipVi~g~~g~~--~--------~~sD~~A~~lA~~l~a~~li~~tdVdGvy~ 161 (229)
T cd04239 105 P--------YIRR----RAI-RHLEKGRIVIFGGGTGNP--G--------FTTDTAAALRAEEIGADVLLKATNVDGVYD 161 (229)
T ss_pred c--------ccHH----HHH-HHHhCCCEEEEeCccCCC--C--------CCcHHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 0 1222 222 245688999999997643 1 239999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEE
Q 008621 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI 375 (559)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I 375 (559)
+||+.+|+|++|++++|+|+.+++. +++||.+++++.+.|+|++|.|+++|+ ..||+|
T Consensus 162 ~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 228 (229)
T cd04239 162 ADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLI 228 (229)
T ss_pred CCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEe
Confidence 9999999999999999999998875 899999999999999999999998874 357776
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als |
| >PRK14558 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-29 Score=248.12 Aligned_cols=212 Identities=23% Similarity=0.321 Sum_probs=160.8
Q ss_pred eEEEEeCccccCCH-------HHHHHHHHHHHcCCC-CCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHH
Q 008621 82 TCVMKFGGSSLASA-------ERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (559)
Q Consensus 82 ~~V~KFGGsSl~~~-------~~~~~va~iI~~~~~-~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~ 153 (559)
.+|.|+|||.+.+. +.++++++.|++..+ ...+|+|++.|.+-. +..
T Consensus 2 riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~-----g~~-------------------- 56 (231)
T PRK14558 2 RVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFR-----GVE-------------------- 56 (231)
T ss_pred eEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHH-----HHh--------------------
Confidence 47999999999643 678999999887532 334544443343210 100
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEe
Q 008621 154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (559)
Q Consensus 154 ~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~ 233 (559)
+ ...++...|.+.++||+||+.+++.+|.++|+++.++++ +.+.
T Consensus 57 --------~------------------------~~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~----~~~~ 100 (231)
T PRK14558 57 --------L------------------------KELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQ----IVNL 100 (231)
T ss_pred --------c------------------------cCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecc----cccc
Confidence 0 112445678899999999999999999999999999885 2222
Q ss_pred cCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccc
Q 008621 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (559)
Q Consensus 234 ~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (559)
.+ +...+.. .+.. +++.+.|||++||.+.. .+.+|++|+++|..|+|+++++||||||||
T Consensus 101 ~~-----~~~~~~~----~i~~-ll~~g~vpV~~G~~~~~----------~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy 160 (231)
T PRK14558 101 PS-----VEPINYD----DIEL-YFRAGYIVIFAGGTSNP----------FFTTDTAAALRAVEMKADILIKATKVDGIY 160 (231)
T ss_pred ch-----hhhhhHH----HHHH-HHHCCCEEEEECCCCCC----------CCCcHHHHHHHHHHcCCCEEEEEecCCeeE
Confidence 11 1112222 2332 35678999999986521 123899999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEec
Q 008621 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
++||+.+|+|+++++++|+|+.++ |++++||+++++|+++|||++|.|+++|. ..||+|.+
T Consensus 161 ~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 161 DKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred ccCCCCCCCCeEcccccHHHHHHc---CcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 999999999999999999999887 88999999999999999999999998874 35777754
|
|
| >cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=250.17 Aligned_cols=213 Identities=24% Similarity=0.327 Sum_probs=163.8
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 81 ~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
+++|+|||||++. +.+.++++++.|++.. +.++|||+|| |..... .. +
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGg-G~~~~~-~~----~----------------- 57 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGG-GNIFRG-AS----A----------------- 57 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-Cccccc-ch----h-----------------
Confidence 4689999999996 7899999999999643 3467788887 422100 00 0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
..++. .....|++.++||++|+.+++.+|+++|+++.++++.+...+
T Consensus 58 --------~~~~~-------------------------~~~~~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~ 104 (231)
T cd04254 58 --------AEAGM-------------------------DRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGV 104 (231)
T ss_pred --------hhcCC-------------------------CchhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhh
Confidence 00111 111246787889999999999999999999999999875222
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
+ ...+... +. .+++++.|||++||.|.. .. .+|++|+++|.+|+|+++++||||||
T Consensus 105 ~---------~~~~~~~----l~-~~l~~g~ipV~~g~~G~~----~~------~~D~~a~~lA~~l~a~~l~~~tdVdG 160 (231)
T cd04254 105 A---------EPYIRRR----AI-RHLEKGRVVIFAGGTGNP----FF------TTDTAAALRAIEINADVILKATKVDG 160 (231)
T ss_pred h---------cccCHHH----HH-HHHHCCCEEEEECCcCCC----CC------CcHHHHHHHHHHcCCCEEEEEeCCCE
Confidence 1 0112222 22 235678999999987632 11 28999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
||++||+.+|+++++++++|+|+.+ .|++++||+++++|.++|||++|.|+++|+ ..||+|+
T Consensus 161 vy~~dp~~~~~a~~i~~i~~~~~~~---~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 161 VYDADPKKNPNAKRYDHLTYDEVLS---KGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred EEecCCCCCCCcEEeeEecHHHHHh---cchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 9999999999999999999999876 488999999999999999999999998874 4677763
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be |
| >TIGR02075 pyrH_bact uridylate kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=239.36 Aligned_cols=213 Identities=24% Similarity=0.347 Sum_probs=162.6
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 81 ~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
+++|+|||||++. +.+.++++++.|.+.. +.+.|+|+|| | +.+....
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~-G---s~~~~~~-------------------- 57 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGG-G---NIFRGVS-------------------- 57 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-C---HHHHHHH--------------------
Confidence 4689999999998 5788999999998643 2355666666 3 2221110
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
+++++. +....|++.++++++++.+|+.+|+++|+++..+++.+.+ .
T Consensus 58 -------a~~~~~-------------------------~~~~~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~-~ 104 (233)
T TIGR02075 58 -------AKELGI-------------------------DRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMP-Q 104 (233)
T ss_pred -------HHhcCC-------------------------CCccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCC-C
Confidence 111211 1112478889999999999999999999999999987753 1
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeC-Cc
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VD 310 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TD-V~ 310 (559)
+...+ +. +.+.+ +++.|.|||++||.|.. ...+|++|+++|..|+|+.+++||| ||
T Consensus 105 ~~~~~--------~~----~~i~~-ll~~g~VpV~~g~~g~~----------~~s~D~~a~~lA~~l~a~~li~~td~Vd 161 (233)
T TIGR02075 105 ICESY--------IR----RKAIK-HLEKGKVVIFSGGTGNP----------FFTTDTAAALRAIEINADVILKGTNGVD 161 (233)
T ss_pred Ccccc--------CH----HHHHH-HHHCCCEEEEECCCCCC----------CCCchHHHHHHHHHcCCCEEEEeecccC
Confidence 11111 11 22333 45788899999986632 1128999999999999999999999 99
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
|||++||+.+|+++++++++|+|+.++ |++++||+++++|.++|||++|.|+++|+ ..||+|+
T Consensus 162 Gvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 162 GVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred eEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 999999999999999999999998765 88899999999999999999999988774 4677763
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. |
| >PRK13402 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-28 Score=252.65 Aligned_cols=226 Identities=19% Similarity=0.309 Sum_probs=174.2
Q ss_pred CcceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCC--CcccHHHHHhhHhhhhcCcCcchhhhHH
Q 008621 79 KQLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAM--GKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~------~~~~~~va~iI~~~~--~~~~vVVVSA~--g~~Td~L~~~~~~~~~~~~~~~~~~~~l 148 (559)
.++++|+||||++|.+ .+.+.++++.|.... +.++|+|+|++ .|. +.|
T Consensus 4 ~~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~-~~l--------------------- 61 (368)
T PRK13402 4 NWKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGY-HKL--------------------- 61 (368)
T ss_pred CCcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCc-ccc---------------------
Confidence 4578999999999985 589999999998643 34567777764 222 111
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccce
Q 008621 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI 228 (559)
Q Consensus 149 ~~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~ 228 (559)
+.. .......++.+.+.||.++..++..+|+++|+++. |+
T Consensus 62 --------------~~~---------------------~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~a-----qv 101 (368)
T PRK13402 62 --------------GFI---------------------DRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAA-----QL 101 (368)
T ss_pred --------------CCC---------------------CCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEE-----EE
Confidence 000 00012345788999999999999999999999983 44
Q ss_pred EEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceee--ecCCcchhHHHHHHHHcCcCcEEEe
Q 008621 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVW 306 (559)
Q Consensus 229 ~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~t--lgRgGSD~tAa~lA~~L~A~~l~i~ 306 (559)
++|.+++.+.+ .+.++++.+.. |++.+.|||+.. ++.+++ ++||+||++|+++|.+++|+.++||
T Consensus 102 -LlT~~d~~~~~----~y~n~~~~l~~-LL~~g~IPIine-------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~Liil 168 (368)
T PRK13402 102 -LLTHGDLRDRE----RYINIRNTINV-LLERGILPIINE-------NDAVTTDRLKVGDNDNLSAMVAALADADTLIIL 168 (368)
T ss_pred -EEecchhhhHH----HHHHHHHHHHH-HHHCCcEEEEeC-------CCcEeecccccCChHHHHHHHHHHhCCCEEEEE
Confidence 66766654322 24445555543 568899999942 233444 8899999999999999999999999
Q ss_pred eCCcccccCCCCCCCCCccccccCH--HHHHHHH-----HcCCCcchH--hHHHHHHhCCCCEEEecCCCCC--------
Q 008621 307 KDVDGVLTCDPNIHPHAKPVPYLTF--DEAAELA-----YFGAQVLHP--QSMRPAREGDIPVRVKNSYNPN-------- 369 (559)
Q Consensus 307 TDV~GV~taDP~~v~~a~~i~~ls~--~Ea~eLa-----~~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~-------- 369 (559)
|||||||++||+.+|+|++|+++++ +|+.+++ .+|..+|+| +++..|.++|+|++|.|+.+|+
T Consensus 169 TDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g 248 (368)
T PRK13402 169 SDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKG 248 (368)
T ss_pred ecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcC
Confidence 9999999999999999999999997 7787776 468899999 5899999999999999998873
Q ss_pred -CCCeEEecCC
Q 008621 370 -APGTLIRRSR 379 (559)
Q Consensus 370 -~~GT~I~~~~ 379 (559)
..||+|.+..
T Consensus 249 ~~~GT~i~~~~ 259 (368)
T PRK13402 249 QNPGTYFTPEE 259 (368)
T ss_pred CCCceEEecCC
Confidence 4699997643
|
|
| >cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-27 Score=232.05 Aligned_cols=202 Identities=22% Similarity=0.301 Sum_probs=159.7
Q ss_pred EEEEeCccccCC---HHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 83 ~V~KFGGsSl~~---~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
+|+|||||++.+ .+.++++++.|++..+.+++|+|+++|..++.+.+.++
T Consensus 2 iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~~~~iiiV~GgG~~a~~~~~~~~--------------------------- 54 (221)
T cd04253 2 IVISLGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGRLAREYISVAR--------------------------- 54 (221)
T ss_pred EEEEeccceeCCCCChHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHH---------------------------
Confidence 699999999988 69999999999975434456677788887777654321
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCc
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (559)
+++. +....|++...++++|+.+++.+|+ .|++++.++
T Consensus 55 -~~~~-------------------------~~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~~--------------- 92 (221)
T cd04253 55 -KLGA-------------------------SEAFLDEIGIMATRLNARLLIAALG-DAYPPVPTS--------------- 92 (221)
T ss_pred -HcCC-------------------------CHHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCCC---------------
Confidence 1211 2234577888899999999998887 777664431
Q ss_pred eeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCC
Q 008621 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (559)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (559)
...+. + +++.+.|||++||++ +.+ +|++|+++|..|+|+.+++||||||||++||+.
T Consensus 93 ------~~~~~----~-~l~~g~vpv~~G~~~-----~~s-------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~ 149 (221)
T cd04253 93 ------YEEAL----E-AMFTGKIVVMGGTEP-----GQS-------TDAVAALLAERLGADLLINATNVDGVYSKDPRK 149 (221)
T ss_pred ------HHHHH----H-HHHcCCeEEEECCCC-----CCc-------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCC
Confidence 11122 2 245788999999864 222 799999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHc-----CC-CcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 320 HPHAKPVPYLTFDEAAELAYF-----GA-QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~-----Ga-~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
+|+|++|++++++|+.+++.. |+ .++|+.+++++.++++|++|.|+.+|+ ..||+|.
T Consensus 150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I~ 221 (221)
T cd04253 150 DPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTIIE 221 (221)
T ss_pred CCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 999999999999999999876 55 689999999999999999999988774 3577763
|
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi |
| >cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=233.35 Aligned_cols=224 Identities=18% Similarity=0.286 Sum_probs=172.3
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHH
Q 008621 83 CVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (559)
Q Consensus 83 ~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (559)
.|+|||||++.+++.++++++.|.... ...++|+|||+|+.+|.|++....
T Consensus 1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~--------------------------- 53 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNF--------------------------- 53 (252)
T ss_pred CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCC---------------------------
Confidence 489999999999989999999998642 346789999999999998864221
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHh-hhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC-
Q 008621 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVS-FGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN- 238 (559)
Q Consensus 161 ~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils-~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~- 238 (559)
++ ++.++++. .++...+.+.. .++++|..++++++ ++|++++++++.+.++++.++++.
T Consensus 54 ----~~-----------~~~~g~rv---t~~~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~ 114 (252)
T cd04249 54 ----PS-----------EKKNGLRV---TPKEQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPE 114 (252)
T ss_pred ----CC-----------EEECCEec---CCHHHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCC
Confidence 00 01122222 24455566544 47899999888765 899999999999998998875542
Q ss_pred ----ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 239 ----ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 239 ----a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
+++...+.+.++. +++.|.|||++| +|.+ .+|++++++ +|++|+.+|.+|+|+ +++||||||||+
T Consensus 115 ~~~~G~v~~i~~~~l~~-----ll~~g~ipVi~~-~g~~-~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~ 183 (252)
T cd04249 115 LGAVGKATANDPSLLND-----LLKAGFLPIISS-IGAD-DQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLD 183 (252)
T ss_pred CCcccceEEEcHHHHHH-----HHHCCCEEEECC-CEEC-CCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCC
Confidence 4555555543333 356889999997 6888 489999998 999999999999999 789999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCC-----CcchHhHHHHHHhCCCCEEEecCCCCC
Q 008621 315 CDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPN 369 (559)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (559)
.|| ++|++++++|+.++...|. ...++.|++.+.+.+++++|.|...|+
T Consensus 184 ~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~ 237 (252)
T cd04249 184 ADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPE 237 (252)
T ss_pred CCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 876 5799999999999987653 344556888888888999999887663
|
There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). |
| >TIGR02076 pyrH_arch uridylate kinase, putative | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=227.26 Aligned_cols=202 Identities=24% Similarity=0.257 Sum_probs=156.6
Q ss_pred EEEEeCccccCC---HHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 83 ~V~KFGGsSl~~---~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
+|+|||||++.+ .+.++++++.|++..+.+++|+|+++|..++.+++.+
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~~a~~~~~~~---------------------------- 52 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGKTARRYIGVA---------------------------- 52 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcHHHHHHHHHH----------------------------
Confidence 489999999988 6999999999997543345666666666665554332
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCc
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (559)
++++. +....|++...++++|+.++...|+..+++++..+..+
T Consensus 53 ~~~~~-------------------------~~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~~~~------------ 95 (221)
T TIGR02076 53 RELGA-------------------------SETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENFEE------------ 95 (221)
T ss_pred HHcCC-------------------------CHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCCHHH------------
Confidence 11211 23455788888999999999999988888765433111
Q ss_pred eeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCC
Q 008621 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (559)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (559)
..+ .+..+.+||++||++ |. .+|++|+++|.+|+|+.+++||||||||++||+.
T Consensus 96 ---------~~~-----~l~~g~ipv~~G~~~-----~~-------s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~ 149 (221)
T TIGR02076 96 ---------ALE-----AMSLGKIVVMGGTHP-----GH-------TTDAVAALLAEFSKADLLINATNVDGVYDKDPKK 149 (221)
T ss_pred ---------HHH-----HHHcCCEEEEcCCCC-----CC-------CcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCC
Confidence 111 135678999999862 32 2799999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHH---cCCC---cchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEE
Q 008621 320 HPHAKPVPYLTFDEAAELAY---FGAQ---VLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI 375 (559)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~---~Ga~---vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I 375 (559)
+|+|++|++++++|+.+++. +|.. .+|+.+++++.+.++|++|.|+.+|+ ..||+|
T Consensus 150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 220 (221)
T TIGR02076 150 DPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220 (221)
T ss_pred CCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence 99999999999999999987 3333 67999999999999999999988774 357776
|
This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. |
| >cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=237.57 Aligned_cols=230 Identities=20% Similarity=0.282 Sum_probs=172.8
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
.++|+|||||++.+++.++.+++.|... .+.++|+|++|++.+++.+.+.+..
T Consensus 15 ~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~------------------------- 69 (279)
T cd04250 15 KTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIE------------------------- 69 (279)
T ss_pred CEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCC-------------------------
Confidence 5799999999999998888888888743 2346788888877777776554221
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
. .+.++++.+.+.+.+..+++++ | ++|..+ ++.|++.|++++++++.+.++++++.++.
T Consensus 70 -------~-----------~~~~g~r~t~~~~~~~~~~~~~-g-~ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~ 128 (279)
T cd04250 70 -------S-----------EFVNGLRVTDEETMEIVEMVLV-G-KVNKEI-VSLINRAGGKAVGLSGKDGNLIKAKKKDA 128 (279)
T ss_pred -------C-----------EeECCeecCCHHHHHHHHHHHc-C-chHHHH-HHHHHHcCCCcceeecCCCCEEEEEECcc
Confidence 0 0111222222212233344555 7 689886 78899999999999999998999876652
Q ss_pred ------------ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEe
Q 008621 239 ------------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVW 306 (559)
Q Consensus 239 ------------a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~ 306 (559)
+++...+...+. .+++.+.|||++| ++.+ ..|++++++ +|.+|+.+|.+|+|+++++|
T Consensus 129 ~~~~~~~~~~~~g~i~~i~~~~i~-----~ll~~g~IPVi~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~A~~li~l 198 (279)
T cd04250 129 TVIEEIIDLGFVGEVTEVNPELLE-----TLLEAGYIPVIAP-VGVG-EDGETYNIN---ADTAAGAIAAALKAEKLILL 198 (279)
T ss_pred cccCCCcccCcccceEEEcHHHHH-----HHHHCCCeEEEcC-CccC-CCCcEEEeC---HHHHHHHHHHHhCCCEEEEE
Confidence 344444544333 3457889999999 6877 478888887 99999999999999999999
Q ss_pred eCCcccccCCCCCCCCCccccccCHHHHHHHHHc--CCCcchHh--HHHHHHhCCCC-EEEecCCCCC
Q 008621 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF--GAQVLHPQ--SMRPAREGDIP-VRVKNSYNPN 369 (559)
Q Consensus 307 TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~--Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~ 369 (559)
|||||||++||+ ++++|++++++|+.++++. +...|.++ ++..+.+.|++ ++|.|+.+|+
T Consensus 199 tdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~ 263 (279)
T cd04250 199 TDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPH 263 (279)
T ss_pred ECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 999999999984 4899999999999999865 34678775 66666777886 9999987774
|
In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A |
| >PRK05429 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=243.11 Aligned_cols=228 Identities=23% Similarity=0.365 Sum_probs=169.6
Q ss_pred cceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 80 QLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~------~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
|+++|+|||||++.+ .+.++++++.|.... +.++|+|+|++-+....
T Consensus 8 ~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGai~~g~~------------------------- 62 (372)
T PRK05429 8 ARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGAVAAGRE------------------------- 62 (372)
T ss_pred CCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccHhhhhHh-------------------------
Confidence 567999999999986 889999999998754 23555666542111110
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
.++... +......++.+.+.||..+++++..+|+++|+++..+ ++
T Consensus 63 ---------~l~l~~--------------------~~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~qi------l~ 107 (372)
T PRK05429 63 ---------RLGLPE--------------------RPKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQI------LL 107 (372)
T ss_pred ---------hcCCCC--------------------CCCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEEE------Ee
Confidence 011110 0012234578889999999999999999999997553 56
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCce--eeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI--TTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~--~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
|.+++.+.. .+-+..+.+ ..|++.+.|||+.+ ++.+ ..+++|++|++|+++|.+|+|+.++|||||
T Consensus 108 t~~d~~~~~----~~ln~~~~i-~~Ll~~g~IPVi~~-------nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDV 175 (372)
T PRK05429 108 TRDDLEDRE----RYLNARNTL-RTLLELGVVPIINE-------NDTVATDEIKFGDNDTLSALVANLVEADLLILLTDV 175 (372)
T ss_pred ehhHhhhhh----HhhhHHHHH-HHHHHCCCEEEEcC-------CCccceecccccChHHHHHHHHHHcCCCEEEEecCC
Confidence 665553211 111222333 34567899999953 2222 237899999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchH--hHHHHHHhCCCCEEEecCCCCC---------CC
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------AP 371 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~--~Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~ 371 (559)
||||++||+.+|++++|+++++ +|+.+++. +|..+|+| +++..+.++|++++|.|+.+|+ ..
T Consensus 176 dGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~ 255 (372)
T PRK05429 176 DGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAV 255 (372)
T ss_pred CeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCC
Confidence 9999999999999999999998 67888863 68889999 6899999999999999988773 47
Q ss_pred CeEEecCC
Q 008621 372 GTLIRRSR 379 (559)
Q Consensus 372 GT~I~~~~ 379 (559)
||+|.+..
T Consensus 256 GT~i~~~~ 263 (372)
T PRK05429 256 GTLFLPQE 263 (372)
T ss_pred CEEEeeCC
Confidence 99998653
|
|
| >PRK00942 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-26 Score=233.98 Aligned_cols=237 Identities=23% Similarity=0.322 Sum_probs=175.3
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~-~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
++++|+||||+++.+.+.+..+++.|....+ ..++||||++|+.++.+++...
T Consensus 23 ~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g-------------------------- 76 (283)
T PRK00942 23 GKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLG-------------------------- 76 (283)
T ss_pred CCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCC--------------------------
Confidence 4679999999999999999999988885322 2346888999999999876311
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC--
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-- 236 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~-- 236 (559)
... ++.++++.+.+.+....+++++ | +++..++ ++|+++|+++.++++.+.++++++++
T Consensus 77 -----~~~-----------~~~~g~~~t~~~~l~~~~~a~~-G-~l~~~i~-~~L~~~Gv~a~~l~~~~~~~~ta~~~~~ 137 (283)
T PRK00942 77 -----IES-----------EFVNGLRVTDAETMEVVEMVLA-G-KVNKELV-SLINKHGGKAVGLSGKDGGLITAKKLEE 137 (283)
T ss_pred -----CCc-----------EeeCCEecCCHHHHHHHHHHHc-C-chHHHHH-HHHHhCCCCccceeeccCCEEEEEECCC
Confidence 000 0112222211111122345555 7 7787766 78999999999999999999998765
Q ss_pred ----C-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 237 ----T-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 237 ----~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
+ .+++...+...+.+ +++.|.|||++| +|.+. +|++++++ +|++|+.||.+|+|+++++||||||
T Consensus 138 ~~~~~~~g~i~~i~~~~l~~-----ll~~g~vpVv~~-~~~~~-~g~~~~l~---~D~~A~~lA~~l~A~~li~~tdv~G 207 (283)
T PRK00942 138 DEDLGFVGEVTPVNPALLEA-----LLEAGYIPVISP-IGVGE-DGETYNIN---ADTAAGAIAAALGAEKLILLTDVPG 207 (283)
T ss_pred CCCCccccceEEECHHHHHH-----HHHCCCEEEEcC-cEECC-CCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCcc
Confidence 2 14454555443332 357889999997 68884 79999997 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchHh--HHHHHHhCCC-CEEEecCCCCC----------CCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDI-PVRVKNSYNPN----------APGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga--~vlhp~--a~~~a~~~~I-pv~I~n~~~p~----------~~GT~I~ 376 (559)
||++ +++++++++++|+.+++..|. ..|.|+ ++..+.+.|+ +++|.|+.+|+ +.||+|.
T Consensus 208 v~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~ 281 (283)
T PRK00942 208 VLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIV 281 (283)
T ss_pred cccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEe
Confidence 9986 478999999999999988642 566665 5556667787 59999876654 3688887
Q ss_pred c
Q 008621 377 R 377 (559)
Q Consensus 377 ~ 377 (559)
+
T Consensus 282 ~ 282 (283)
T PRK00942 282 P 282 (283)
T ss_pred c
Confidence 5
|
|
| >TIGR00761 argB acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=226.90 Aligned_cols=215 Identities=19% Similarity=0.275 Sum_probs=160.6
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (559)
++|+|||||++.++ ++++++.|.... ...++|+||++|+.+|.+++.....
T Consensus 1 ~~ViK~GGs~l~~~--~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~-------------------------- 52 (231)
T TIGR00761 1 TIVIKIGGAAISDL--LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIP-------------------------- 52 (231)
T ss_pred CEEEEEChHHHhcc--HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCC--------------------------
Confidence 47999999999986 889999888643 2334678899999999987643210
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCC--
Q 008621 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT-- 237 (559)
Q Consensus 161 ~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~-- 237 (559)
. ++.++++. .++...+.+ .+++++++..+++ +|+++|++++++++.+.++++..++.
T Consensus 53 -----~-----------~~~~g~r~---t~~~~~~~~~~~~~g~~~~~i~~-~L~~~G~~a~~l~~~~~~~it~~~~~~~ 112 (231)
T TIGR00761 53 -----P-----------EFKNGLRV---TDKETLEVVEMVLIGQVNKELVA-LLNKHGINAIGLTGGDGQLFTARSLDKE 112 (231)
T ss_pred -----C-----------EecCCCcc---CCHHHHHHHHHHHhcchHHHHHH-HHHhCCCCcccccCCCCCEEEEEECCCc
Confidence 0 00111111 122332222 2235588888775 89999999999999998888876543
Q ss_pred ----CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccc
Q 008621 238 ----NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (559)
Q Consensus 238 ----~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (559)
.+++...+.+.+++ +++.+.|||++| +|.+ .+|++++++ +|++|+.||.+|+|++++|||||||||
T Consensus 113 ~~~~~g~i~~i~~~~i~~-----~l~~g~IPVi~~-~~~~-~~g~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~ 182 (231)
T TIGR00761 113 DLGYVGEIKKVNKALLEA-----LLKAGYIPVISS-LALT-AEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGIL 182 (231)
T ss_pred cCCcccceEEEcHHHHHH-----HHHCCCeEEECC-CccC-CCCcEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCee
Confidence 23454555444433 356789999999 5877 479999998 999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC
Q 008621 314 TCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP 359 (559)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip 359 (559)
++||+ ++|++|+++|+.++++.| ...|.|| ++..+.+.|++
T Consensus 183 ~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~ 227 (231)
T TIGR00761 183 NGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVK 227 (231)
T ss_pred cCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCC
Confidence 99984 689999999999999877 4788886 66677788886
|
This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model. |
| >TIGR01027 proB glutamate 5-kinase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=235.74 Aligned_cols=225 Identities=22% Similarity=0.382 Sum_probs=166.2
Q ss_pred eEEEEeCccccCCHH------HHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHH
Q 008621 82 TCVMKFGGSSLASAE------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~------~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~ 153 (559)
++|+|||||++.+.+ .++++++.|.... +.++|+|+|++ +.-.+
T Consensus 2 riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~--~~~g~-------------------------- 53 (363)
T TIGR01027 2 RIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGA--IAAGF-------------------------- 53 (363)
T ss_pred eEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcH--HhcCc--------------------------
Confidence 589999999999754 4899999988653 23455666543 21000
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEe
Q 008621 154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (559)
Q Consensus 154 ~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~ 233 (559)
..++... +..+...++.+.+.|+..+..++...|.++|+++ .++ ++|.
T Consensus 54 ------~~lg~~~--------------------~~~~l~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~-----aqi-llt~ 101 (363)
T TIGR01027 54 ------EALGLPE--------------------RPKTLAEKQALAAVGQVRLMQLYEQLFSQYGIKV-----AQI-LLTR 101 (363)
T ss_pred ------cccCCCC--------------------CccchHHHHHHHHhChHHHHHHHHHHHHHcCCeE-----EEE-EEec
Confidence 0011110 0112234577899999999999999999999996 333 6777
Q ss_pred cCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCce--eeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI--TTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 234 ~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~--~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
++|.+.. .+.+....+. .|++.+.|||+.- ++.+ +.+++|++|++|+++|.+++|+.++|||||||
T Consensus 102 ~d~~~~~----~~lna~~~i~-~Ll~~g~iPVi~e-------nd~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdG 169 (363)
T TIGR01027 102 ADFSDRE----RYLNARNTLE-ALLELGVVPIINE-------NDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDG 169 (363)
T ss_pred cchhhHH----HHHHHHHHHH-HHHhCCCEEEEeC-------CCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 7665432 2223333333 4567889999941 2222 45889999999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHH--HHHHHH-----HcCCCcchHh--HHHHHHhCCCCEEEecCCCCC---------CCCe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFD--EAAELA-----YFGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN---------APGT 373 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~--Ea~eLa-----~~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~GT 373 (559)
||++||+.+|+|++|+++++. +..+++ .+|..+|+|| ++..+.++|+|++|.|+++|+ ..||
T Consensus 170 Vy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT 249 (363)
T TIGR01027 170 LYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGT 249 (363)
T ss_pred ccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcE
Confidence 999999999999999999974 455665 4788899998 899999999999999998774 4699
Q ss_pred EEecC
Q 008621 374 LIRRS 378 (559)
Q Consensus 374 ~I~~~ 378 (559)
+|.+.
T Consensus 250 ~i~~~ 254 (363)
T TIGR01027 250 LFHAQ 254 (363)
T ss_pred EEeeC
Confidence 99764
|
Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family. |
| >PLN02418 delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=252.16 Aligned_cols=239 Identities=18% Similarity=0.247 Sum_probs=178.3
Q ss_pred CcceEEEEeCccccCCHH------HHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 79 KQLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~~------~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
.|+++|+|||||||.+.+ ++++++++|... .+.++|+|+||+.+.|+.++.+.+..
T Consensus 14 ~~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~---------------- 77 (718)
T PLN02418 14 DVKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLV---------------- 77 (718)
T ss_pred hCCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhh----------------
Confidence 367899999999999988 999999999864 24568999999999999988754311
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
+++..+ + .+......+..++|+||++++.+++.+|+++|++ ++|+ +
T Consensus 78 ---------~~~~~~-----------------~--~~~~~~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~-----~~qi-l 123 (718)
T PLN02418 78 ---------NSSFAD-----------------L--QKPQMELDGKACAAVGQSELMALYDTLFSQLDVT-----ASQL-L 123 (718)
T ss_pred ---------hccccc-----------------C--CCCcchHHHHHHHHhhHHHHHHHHHHHHHHcCCe-----EEEE-E
Confidence 111000 0 0000111223789999999999999999999994 4666 8
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecC---------CcchhHHHHHHHHcCcC
Q 008621 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---------GGSDLTATTIGKALGLQ 301 (559)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgR---------gGSD~tAa~lA~~L~A~ 301 (559)
+|+++|.+.+. +.+..+.+. .|++.|.|||+.| ++.+++..+ |++|++|+++|.+++|+
T Consensus 124 lT~~~~~~~~~----~~~~~~~l~-~ll~~g~iPVv~~-------nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad 191 (718)
T PLN02418 124 VTDSDFRDPDF----RKQLSETVE-SLLDLRVIPIFNE-------NDAVSTRRAPYEDSSGIFWDNDSLAALLALELKAD 191 (718)
T ss_pred ecHhHhcchhH----hHhHHHHHH-HHHHCCCEEEEcC-------CCCccccccccccccCeecCcHHHHHHHHHHcCCC
Confidence 88888876543 233344444 3567889999955 344444422 26999999999999999
Q ss_pred cEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHH------cCCCcchH--hHHHHHHhCCCCEEEecCCCCC----
Q 008621 302 EIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY------FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---- 369 (559)
Q Consensus 302 ~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~------~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---- 369 (559)
.++|||||||||++||+ .|++++|++++..+...... .|...|.| +++..+.++|++++|.|+..|+
T Consensus 192 ~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~ 270 (718)
T PLN02418 192 LLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRK 270 (718)
T ss_pred EEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHHCCCcEEEeCCCCcchHHH
Confidence 99999999999999998 59999999998765433222 24678998 4888999999999999987764
Q ss_pred -----CCCeEEecCCC
Q 008621 370 -----APGTLIRRSRD 380 (559)
Q Consensus 370 -----~~GT~I~~~~~ 380 (559)
..||+|.+...
T Consensus 271 ~l~g~~~GT~i~~~~~ 286 (718)
T PLN02418 271 VLRGERVGTLFHQDAH 286 (718)
T ss_pred HhcCCCCceEeccccc
Confidence 47999987543
|
|
| >cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=223.65 Aligned_cols=222 Identities=22% Similarity=0.287 Sum_probs=165.1
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHHh
Q 008621 83 CVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (559)
Q Consensus 83 ~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (559)
+|+||||+++.+++.++++++.|.... ...++|||+++|+.+|.+++......+
T Consensus 1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~------------------------- 55 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESE------------------------- 55 (256)
T ss_pred CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCE-------------------------
Confidence 489999999999999999999888532 233566669999999998865321100
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhccCCCHH---HHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC--
Q 008621 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPR---SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-- 236 (559)
Q Consensus 162 L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~---~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~-- 236 (559)
+.++++ ..+++ ..++.++ | ++|..+ +++|+++|++++++++.+.++++++.+
T Consensus 56 -----------------~~~~~r---~t~~~~l~~~~~a~~-g-~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~ 112 (256)
T cd04238 56 -----------------FVNGLR---VTDKETMEIVEMVLA-G-KVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEE 112 (256)
T ss_pred -----------------eECCee---cCCHHHHHHHHHHHc-C-chHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCC
Confidence 001111 11222 2234444 7 888886 788999999999999999889988653
Q ss_pred -----C-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 237 -----T-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 237 -----~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
+ .+++...+...+.. +++.+.|||++| ++.+ ..|++++++ +|++|+.+|.+|+|+++++|||||
T Consensus 113 ~~~~~~~~g~i~~i~~~~l~~-----ll~~g~ipVv~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~ 182 (256)
T cd04238 113 KDIDLGFVGEVTEVNPELLET-----LLEAGYIPVIAP-IAVD-EDGETYNVN---ADTAAGAIAAALKAEKLILLTDVP 182 (256)
T ss_pred CCCCcccccceEEECHHHHHH-----HHHCCCEEEECC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence 2 14454555544432 357889999998 6877 479999998 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCC-CEEEecCCCC
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNP 368 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p 368 (559)
|||++ +++++++++++|+.+++..+ ...|.|+ ++..+.+.++ +++|.|+..|
T Consensus 183 Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~ 239 (256)
T cd04238 183 GVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVP 239 (256)
T ss_pred cccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 99987 27899999999999998643 3567775 5555666666 5999998766
|
Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=218.84 Aligned_cols=173 Identities=18% Similarity=0.251 Sum_probs=139.6
Q ss_pred CHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec----------------CCCC-ceeeecchHHHHH
Q 008621 190 TPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD----------------DFTN-ADILEATYPAVAK 251 (559)
Q Consensus 190 ~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~----------------~~~~-a~i~~~~~~~i~~ 251 (559)
+++..+.+ .++| ++|..+++ +|+++|++|+++++.+.++++.+ +++. +++...+.+.+..
T Consensus 67 ~~~~l~~~~~a~~-~ln~~lv~-~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ 144 (268)
T PRK14058 67 DRETLEVFIMAMA-LINKQLVE-RLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKL 144 (268)
T ss_pred CHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHH
Confidence 56666664 5889 99999885 89999999999999998777643 1221 4455555544433
Q ss_pred HHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCH
Q 008621 252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF 331 (559)
Q Consensus 252 ~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~ 331 (559)
+++.+.|||++|+ +.+ .+|+.++++ +|++|+.+|.+|+|++++|||||||||++||+ ++++|+++++
T Consensus 145 -----ll~~g~iPVi~~~-~~~-~~g~~~~i~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~ 211 (268)
T PRK14058 145 -----LLKAGYLPVVAPP-ALS-EEGEPLNVD---GDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITP 211 (268)
T ss_pred -----HHHCCCEEEEeCc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCH
Confidence 4578899999996 555 478888887 99999999999999999999999999999994 5789999999
Q ss_pred HHHHHHHHcCCCcchHh--HHHHHHhCCC-CEEEecCCCCC-------CCCeEEec
Q 008621 332 DEAAELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN-------APGTLIRR 377 (559)
Q Consensus 332 ~Ea~eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~-------~~GT~I~~ 377 (559)
+|+.++..+....|.|| ++..+.+.|+ +++|.|..+|+ +.||+|.+
T Consensus 212 ~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~GT~I~~ 267 (268)
T PRK14058 212 EEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGEGTVIVN 267 (268)
T ss_pred HHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCCceEEec
Confidence 99999988777889986 6677778899 79999987774 36999875
|
|
| >PRK14556 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=205.72 Aligned_cols=214 Identities=21% Similarity=0.293 Sum_probs=163.3
Q ss_pred ceEEEEeCccccCC-------HHHHHHHHHHHHcCCC--CCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 81 LTCVMKFGGSSLAS-------AERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 81 ~~~V~KFGGsSl~~-------~~~~~~va~iI~~~~~--~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
+.+|.|.+|..+.. ++.++++++.|+...+ .+..||| ++|.+-.-.
T Consensus 16 ~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVv-GGGni~Rg~------------------------ 70 (249)
T PRK14556 16 KRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVV-GGGNILRGG------------------------ 70 (249)
T ss_pred CEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEE-CCCHHHhCc------------------------
Confidence 46899999999974 4789999999988543 4555666 455443220
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
...++ ...+....|++...+.++|+.++..+|++.|++++.+++-..
T Consensus 71 -------~~~~~-----------------------~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~--- 117 (249)
T PRK14556 71 -------RANFG-----------------------NKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGV--- 117 (249)
T ss_pred -------hhhcc-----------------------CCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeecccc---
Confidence 00000 012345679999999999999999999999999988887432
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
..+ +++. ++.+ ..+. +++|.|+|++|+.|.. ..+ +|++|+++|..++|+.+++||||||
T Consensus 118 --~~~--~e~~--~~~~----~~~~-l~~g~vvi~~gg~G~p----~~S------tD~lAallA~~l~Ad~Lii~TdVDG 176 (249)
T PRK14556 118 --DGL--LKVA--SAHE----FNQE-LAKGRVLIFAGGTGNP----FVT------TDTTASLRAVEIGADALLKATTVNG 176 (249)
T ss_pred --CcC--CCCC--CHHH----HHHH-HhCCCEEEEECCCCCC----cCC------cHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 111 2221 3322 3332 4678899989987732 233 8999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
|||+||+.+|+|+++++++|+|+.+ .+.+++++.++++++++|||++|.|..+|+ ..||+|.
T Consensus 177 VYd~DP~~~p~A~~i~~I~~~e~~~---~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~ 247 (249)
T PRK14556 177 VYDKDPNKYSDAKRFDKVTFSEVVS---KELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVT 247 (249)
T ss_pred cCCCCCCCCCCceEeeEEchhhhcc---cchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEE
Confidence 9999999999999999999998876 366899999999999999999999988773 4688875
|
|
| >cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=203.46 Aligned_cols=148 Identities=21% Similarity=0.253 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeee
Q 008621 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (559)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tl 282 (559)
+++.. +.++|.++|+++.++++.++ +.+. ..++...+...+. .+++.|.|||++|+.+.+. +|.+.++
T Consensus 80 ~ln~~-~~~~l~~~g~~a~~l~~~~~-~~~~----~g~~~~~~~~~l~-----~ll~~g~iPVi~~~~~~~~-~~~~~~~ 147 (252)
T cd04241 80 ELNSI-VVDALLEAGVPAVSVPPSSF-FVTE----NGRIVSFDLEVIK-----ELLDRGFVPVLHGDVVLDE-GGGITIL 147 (252)
T ss_pred HHHHH-HHHHHHHCCCCeEEEChHHe-EEec----CCeeeeecHHHHH-----HHHhCCCEEEEcCCeEecC-CCCeEEe
Confidence 66664 66789999999999999996 3332 2344444443333 2457899999999887773 6777778
Q ss_pred cCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHc-------CCCcchHh--HHHHH
Q 008621 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF-------GAQVLHPQ--SMRPA 353 (559)
Q Consensus 283 gRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~-------Ga~vlhp~--a~~~a 353 (559)
+ +|++|+.+|.+|+|+++++||||||||++|| |++++|++++++|+.++... +...|.|| ++..+
T Consensus 148 ~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a 221 (252)
T cd04241 148 S---GDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLEL 221 (252)
T ss_pred C---hHHHHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHH
Confidence 7 9999999999999999999999999999999 89999999999998888652 34578886 67777
Q ss_pred HhCCCCEEEecCCCC
Q 008621 354 REGDIPVRVKNSYNP 368 (559)
Q Consensus 354 ~~~~Ipv~I~n~~~p 368 (559)
.++|++++|.|..+|
T Consensus 222 ~~~Gv~v~I~~g~~~ 236 (252)
T cd04241 222 ARRGIEVYIFNGDKP 236 (252)
T ss_pred HhcCCeEEEEeCCCH
Confidence 789999999998776
|
Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >PLN02512 acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=209.29 Aligned_cols=235 Identities=21% Similarity=0.307 Sum_probs=165.4
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
+++|.||||+++.+++..+.+.+.|.... +.++|+| +++|...+.+++.
T Consensus 48 ~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlV-HGgG~~i~~~~~~---------------------------- 98 (309)
T PLN02512 48 KTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLV-HGGGPEINSWLKK---------------------------- 98 (309)
T ss_pred CeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEE-ECCcHHHHHHHHH----------------------------
Confidence 67999999999998776666666665422 2344555 4555555554432
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH-h-hhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-S-FGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~il-s-~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (559)
++.++ ++.+|++.+ ++...+.+. . .| .++..+. ++|+++|++++++++.+.++++.+.+
T Consensus 99 ---~gi~~-----------~~~~G~rvT---~~~~lei~~~~l~g-~ln~~lv-~~L~~~Gv~av~l~g~d~~~i~a~~~ 159 (309)
T PLN02512 99 ---VGIEP-----------QFKNGLRVT---DAETMEVVEMVLVG-KVNKSLV-SLINKAGGTAVGLSGKDGRLLRARPS 159 (309)
T ss_pred ---cCCCC-----------cCCCCCcCC---CHHHHHHHHHHHhh-HHHHHHH-HHHHHcCCCeEEeehhhCCEEEEEEc
Confidence 11111 122333332 333333331 1 24 5676654 67999999999999999889988765
Q ss_pred CC-------ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 237 TN-------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 237 ~~-------a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
.+ +++...+...++ .+++.+.|||++|+ +.+ ..|+.++++ +|++|+.||.+|+|+++++||||
T Consensus 160 ~~~~~~~~~G~i~~v~~~~i~-----~lL~~g~IPVi~~~-~~d-~~g~~~~i~---~D~~A~~lA~~L~Ad~li~lTdV 229 (309)
T PLN02512 160 PNSADLGFVGEVTRVDPTVLR-----PLVDDGHIPVIATV-AAD-EDGQAYNIN---ADTAAGEIAAALGAEKLILLTDV 229 (309)
T ss_pred CcCccccccceeeecCHHHHH-----HHHhCCCEEEEeCc-eEC-CCCCEeccC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 32 344444444333 34578899999995 777 478888886 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (559)
||||++|| +++++|++++++|+.++...| ...|.|| ++..+.+.|++ ++|.|...|+ ..||+
T Consensus 230 ~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~ 306 (309)
T PLN02512 230 AGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTM 306 (309)
T ss_pred cceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeE
Confidence 99999875 358899999999999998544 4688886 55566778996 8998876652 35777
Q ss_pred Ee
Q 008621 375 IR 376 (559)
Q Consensus 375 I~ 376 (559)
|.
T Consensus 307 I~ 308 (309)
T PLN02512 307 IT 308 (309)
T ss_pred Ee
Confidence 75
|
|
| >COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=195.57 Aligned_cols=214 Identities=23% Similarity=0.360 Sum_probs=165.6
Q ss_pred ceEEEEeCccccCC-------HHHHHHHHHHHHcCCC-CCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 81 LTCVMKFGGSSLAS-------AERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 81 ~~~V~KFGGsSl~~-------~~~~~~va~iI~~~~~-~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
+.+|.|+||+.+.. ++.++++|+.|++..+ +..|.||-++|++-.......
T Consensus 6 ~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~--------------------- 64 (238)
T COG0528 6 MRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAA--------------------- 64 (238)
T ss_pred EEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHH---------------------
Confidence 56999999999974 6899999999998653 345545556676654443211
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (559)
.|. +....|++..++.++|+.+|...|++.|++++.+++...+.+.
T Consensus 65 ---------~g~-------------------------~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~~ 110 (238)
T COG0528 65 ---------AGM-------------------------DRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVA 110 (238)
T ss_pred ---------cCC-------------------------chhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCcccc
Confidence 011 3456689999999999999999999999999988875542111
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeC-Ccc
Q 008621 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDG 311 (559)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TD-V~G 311 (559)
.. .++. +..++ ++++.|+|.+|-.|. + |.+ +|++|++.|..++||-+..-|+ |||
T Consensus 111 -e~--------~~~~----~A~~~-l~~grVvIf~gGtg~--P-~fT-------TDt~AALrA~ei~ad~ll~atn~VDG 166 (238)
T COG0528 111 -EP--------YSRR----EAIRH-LEKGRVVIFGGGTGN--P-GFT-------TDTAAALRAEEIEADVLLKATNKVDG 166 (238)
T ss_pred -Cc--------cCHH----HHHHH-HHcCCEEEEeCCCCC--C-CCc-------hHHHHHHHHHHhCCcEEEEeccCCCc
Confidence 11 1222 22222 467899999884442 1 555 6999999999999999999995 999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
||++||+++|+|+++++|||+|+.+. +.+||+|.|+..+++++||++|.|.++|. +.||+|.
T Consensus 167 VY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~ 237 (238)
T COG0528 167 VYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE 237 (238)
T ss_pred eeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence 99999999999999999999998887 47999999999999999999999977764 4667664
|
|
| >COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=202.19 Aligned_cols=230 Identities=22% Similarity=0.304 Sum_probs=176.1
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
+++.|.|+||+.+.+.+.+..+++.|..+. +.++|||+.+..-+++.|-+.
T Consensus 2 ~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~--------------------------- 54 (265)
T COG0548 2 GKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKL--------------------------- 54 (265)
T ss_pred CceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHc---------------------------
Confidence 578999999999999999999999877643 457765554444444444332
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC-
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF- 236 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~- 236 (559)
+.++ ++.+|++++.+.+.....+++ +-.++..|. +.|+..|.+++++++.|.++++....
T Consensus 55 -----gie~-----------~f~~glRvTd~~tlevv~mvl--~G~vNk~iv-a~l~~~g~~avGlsg~Dg~li~A~~~~ 115 (265)
T COG0548 55 -----GIEP-----------EFVKGLRVTDAETLEVVEMVL--GGTVNKEIV-ARLSKHGGQAVGLSGVDGNLVTAKKLD 115 (265)
T ss_pred -----CCCC-----------eeeCCEEcCCHHHHHHHHHHH--HHHHHHHHH-HHHHHhCCcceeeeecCCCEEEEEEcc
Confidence 2332 356666666544444444444 446787755 56999999999999999889987633
Q ss_pred -------CC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeC
Q 008621 237 -------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308 (559)
Q Consensus 237 -------~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TD 308 (559)
+. +++..+++..+ ..+++++.|||+++ +|.+ .+|++.|++ +|++|+.+|.+|+|++++++||
T Consensus 116 ~~~~id~g~vG~i~~Vn~~~i-----~~ll~~~~IpViap-ia~~-~~G~~~Nvn---aD~~A~~iA~aLkAekLi~ltd 185 (265)
T COG0548 116 VDDGVDLGYVGEIRKVNPELI-----ERLLDNGAIPVIAP-IAVD-EDGETLNVN---ADTAAGALAAALKAEKLILLTD 185 (265)
T ss_pred cccccccceeeeEEEECHHHH-----HHHHhCCCceEEec-ceEC-CCCcEEeeC---HHHHHHHHHHHcCCCeEEEEeC
Confidence 32 35555665433 34567899999999 7888 489999999 9999999999999999999999
Q ss_pred CcccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC
Q 008621 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN 369 (559)
Q Consensus 309 V~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~ 369 (559)
|+|||+.+|+. ..+++++.+|+.+|...| ...|.|+ ++..|.+.|++ ++|.|+..|.
T Consensus 186 v~Gvl~~~~~~----s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~ 247 (265)
T COG0548 186 VPGVLDDKGDP----SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRVPH 247 (265)
T ss_pred CcccccCCCCc----eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcc
Confidence 99999988752 689999999999999988 5788886 77888899995 9999887663
|
|
| >CHL00202 argB acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-22 Score=201.87 Aligned_cols=234 Identities=18% Similarity=0.252 Sum_probs=166.8
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
++.|.|+||+.+.++...+.+++.|.... ...++|+|++.|..-+.+++.
T Consensus 24 ~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~----------------------------- 74 (284)
T CHL00202 24 RIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQ----------------------------- 74 (284)
T ss_pred CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHH-----------------------------
Confidence 57999999999988766667777776542 233455556666544444321
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHh--hhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC-
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVS--FGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF- 236 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils--~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~- 236 (559)
++.++ ++++|++.+ ++...+.+.. .| .++..+. ++|++.|++++++++.+.++++...+
T Consensus 75 --~g~~~-----------~~~~G~rvT---~~~~l~~~~~~l~g-~ln~~lv-~~L~~~Gv~av~l~~~d~~~i~a~~~~ 136 (284)
T CHL00202 75 --LNISP-----------KFWNGIRVT---DKVTMEIVEMVLAG-KVNKDLV-GSINANGGKAVGLCGKDANLIVARASD 136 (284)
T ss_pred --CCCCC-----------EeECCcccC---CHHHHHHHHHHHhh-HHHHHHH-HHHHhCCCCeeeeeeccCCEEEEEeCC
Confidence 12221 123455443 3444443321 24 5677755 56899999999999999888886543
Q ss_pred ----CC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 237 ----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 237 ----~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
+. +++...+...+. .+++.|.|||++|+ |.+ ..|++++++ +|++|+.+|.+|+|++++|||||||
T Consensus 137 ~~d~~~~G~i~~v~~~~i~-----~ll~~g~iPVi~~~-~~~-~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~G 206 (284)
T CHL00202 137 KKDLGLVGEIQQVDPQLID-----MLLEKNYIPVIASV-AAD-HDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPG 206 (284)
T ss_pred CcccccceeEEecCHHHHH-----HHHHCCCEEEECCC-ccC-CCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChh
Confidence 22 455555554443 34578899999995 777 479999998 9999999999999999999999999
Q ss_pred cccC--CCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CCCeE
Q 008621 312 VLTC--DPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (559)
Q Consensus 312 V~ta--DP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (559)
||++ || .+++++++++|+.++...| ...|.|| ++..+.++|++ ++|.|..+|+ +.||+
T Consensus 207 v~~~~~d~-----~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~ 281 (284)
T CHL00202 207 ILADINDP-----NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSM 281 (284)
T ss_pred hcCCCCCC-----CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceE
Confidence 9984 34 3799999999999998775 3688886 66667788987 7998887664 35888
Q ss_pred Ee
Q 008621 375 IR 376 (559)
Q Consensus 375 I~ 376 (559)
|.
T Consensus 282 i~ 283 (284)
T CHL00202 282 LV 283 (284)
T ss_pred Ee
Confidence 74
|
|
| >cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC) | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-21 Score=192.30 Aligned_cols=221 Identities=20% Similarity=0.293 Sum_probs=159.8
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHHhc
Q 008621 83 CVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL 162 (559)
Q Consensus 83 ~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~L 162 (559)
+|.||||+.+.+. +++++.|... +. ++|+|+++|...+.+++. +
T Consensus 1 ~VIKlGGs~l~~~---~~~~~~i~~l-g~-~~VlVHGgg~~i~~~~~~-------------------------------~ 44 (257)
T cd04251 1 IVVKIGGSVVSDL---DKVIDDIANF-GE-RLIVVHGGGNYVNEYLKR-------------------------------L 44 (257)
T ss_pred CEEEEChHHhhCh---HHHHHHHHHc-CC-CEEEECCCHHHHHHHHHH-------------------------------c
Confidence 4899999999864 5677777765 33 477778888766665542 1
Q ss_pred CCCHHHHHHHHHHHHHHHH---hhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC---
Q 008621 163 GIDRSIIATHLEELEQLLK---GIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--- 236 (559)
Q Consensus 163 ~~~~~~i~~~~~~l~~~l~---~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~--- 236 (559)
++++. +++ |+. .+-.+++..+.+....+.+|..+++ +|+++|+++.++++++.++++.+.+
T Consensus 45 gi~~~-----------~~~~~~G~~-~Rvt~~~~l~~~~~a~~~ln~~iv~-~L~~~Gi~a~~l~~~~~~~~~~~~~~~~ 111 (257)
T cd04251 45 GVEPK-----------FVTSPSGIR-SRYTDKETLEVFVMVMGLINKKIVA-RLHSLGVKAVGLTGLDGRLLEAKRKEIV 111 (257)
T ss_pred CCCcE-----------EEeCCCCCc-cccCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceecccccCCEEEEEEeecc
Confidence 11110 110 110 0123456666665444899999765 8999999999999999877765532
Q ss_pred -------------C-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCc
Q 008621 237 -------------T-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQE 302 (559)
Q Consensus 237 -------------~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~ 302 (559)
+ .+++...+.+.++ .+++.+.|||++|| +.+ .+|++++++ +|++|+.+|.+|+|++
T Consensus 112 ~~~~~~~~~~~d~~~~G~v~~v~~~~i~-----~ll~~g~vpVi~~~-~~~-~~G~~~~i~---~D~~A~~lA~~L~A~~ 181 (257)
T cd04251 112 RVNERGRKMIIRGGYTGKVEKVNSDLIE-----ALLDAGYLPVVSPV-AYS-EEGEPLNVD---GDRAAAAIAAALKAER 181 (257)
T ss_pred cccccCcccccCCcceEEEEEEcHHHHH-----HHHhCCCeEEEeCc-EEC-CCCcEEecC---HHHHHHHHHHHcCCCE
Confidence 1 0244444544333 34578899999986 445 379999997 9999999999999999
Q ss_pred EEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHh--HHHHHHhCCC-CEEEecCCCCC
Q 008621 303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN 369 (559)
Q Consensus 303 l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~ 369 (559)
++|||||||||++ ++++++++++|+.++...-...|.|| ++..+.+.|+ .++|.+...|+
T Consensus 182 li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~ 244 (257)
T cd04251 182 LILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADS 244 (257)
T ss_pred EEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence 9999999999963 78999999999999986656678775 7777778888 48898887764
|
This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK). |
| >cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=188.34 Aligned_cols=212 Identities=21% Similarity=0.282 Sum_probs=146.2
Q ss_pred ceEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~--~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
.++|.|+|||.+.+ .+.++++++.|++..+...+++|++.|.......+ .
T Consensus 31 ~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~~~~vilV~GGG~~~r~~~~----------------------------~ 82 (262)
T cd04255 31 DLNVVKIGGQSIIDRGAEAVLPLVEEIVALRPEHKLLILTGGGTRARHVYS----------------------------I 82 (262)
T ss_pred CcEEEEeccceecCCcHHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHH----------------------------H
Confidence 35999999999954 67899999999876544456555554432211111 1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
...++. +....|++...-.++++.++...|...|+++. +..
T Consensus 83 ~~~~g~-------------------------~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i----------~~~---- 123 (262)
T cd04255 83 GLDLGM-------------------------PTGVLAKLGASVSEQNAEMLATLLAKHGGSKV----------GHG---- 123 (262)
T ss_pred HHHcCC-------------------------CchHHHHHHHHHHHHHHHHHHHHHHHcCCCcc----------ccc----
Confidence 112222 12233444433456777777777888888652 111
Q ss_pred ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCc------chhHHHHHHHHcCcCcEEEeeCCccc
Q 008621 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG------SDLTATTIGKALGLQEIQVWKDVDGV 312 (559)
Q Consensus 239 a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgG------SD~tAa~lA~~L~A~~l~i~TDV~GV 312 (559)
+... +. .+++.+.|||+.|+.+.+ ..++++|+| +|++|+++|.+|+|+.+++|||||||
T Consensus 124 ------~~~~----l~-~lL~~g~vPVi~g~~~~~----~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGV 188 (262)
T cd04255 124 ------DLLQ----LP-TFLKAGRAPVISGMPPYG----LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGL 188 (262)
T ss_pred ------cHHH----HH-HHHHCCCeEEEeCCcCCC----eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCee
Confidence 1111 22 235789999999987543 345667666 99999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCC--CCEEEecCCCCC---------CCCeEE
Q 008621 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGD--IPVRVKNSYNPN---------APGTLI 375 (559)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~--Ipv~I~n~~~p~---------~~GT~I 375 (559)
|++||+.+|+|++|++++++|+.++.. +..+|...+...++..+ +|++|.|+.+|+ ..||+|
T Consensus 189 y~~dP~~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i 261 (262)
T cd04255 189 YTADPKKNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII 261 (262)
T ss_pred ECCCCCCCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEe
Confidence 999999999999999999999888752 22346666665555333 699999988774 357776
|
The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-20 Score=189.44 Aligned_cols=245 Identities=16% Similarity=0.205 Sum_probs=165.3
Q ss_pred cceEEEEeCccccCCH-------HHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 80 QLTCVMKFGGSSLASA-------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~-------~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
.+.+|.|+|||++.+. +.+.++++.|.... +.+.|+|.|+....--..+.....
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~----------------- 70 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEIL----------------- 70 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccc-----------------
Confidence 4679999999999653 56788888888642 234444766554433222211000
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhcc-CCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceE
Q 008621 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLK-ELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (559)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~-~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (559)
+... .++..+|..... ..+...+..+.+.|+..-..++...|..+|+++ .|+
T Consensus 71 -----------~~~~----------~~~~~~g~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~- 123 (284)
T cd04256 71 -----------LSSS----------MRQTLKSGQLKDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITV-----AQV- 123 (284)
T ss_pred -----------cccc----------hhhhcccccccCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcH-----HHe-
Confidence 0000 000111111111 112233466788999999999999999999875 676
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccC-----CCCceeeecCCcchhHHHHHHHHcCcCcEE
Q 008621 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW-----RTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (559)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~-----~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~ 304 (559)
++|.++|.+.+. +.+..+.+. .|++.|.|||+.|+=+... .+|+.. ...+++|+.|+++|.+++|+.++
T Consensus 124 llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~-~~i~d~D~lAa~lA~~l~Ad~Li 197 (284)
T cd04256 124 LVTKPDFYDEQT----RRNLNGTLE-ELLRLNIIPIINTNDAVSPPPEPDEDLQGV-ISIKDNDSLAARLAVELKADLLI 197 (284)
T ss_pred eeeccccccHHH----HHHHHHHHH-HHHHCCCEEEEeCCCccccccccccccccc-ccccChHHHHHHHHHHcCCCEEE
Confidence 888888887652 334444444 4578899999976311110 011111 12357999999999999999999
Q ss_pred EeeCCcccccCCCCCCCCCccccccCHHHHHHHHH-----cCCCcchHh--HHHHHHhCCCCEEEecCCCCC--------
Q 008621 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-----FGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN-------- 369 (559)
Q Consensus 305 i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~-----~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~-------- 369 (559)
++|||||||++||+ .|++++|++++..|..++++ .|...|.|| ++..+.++|++++|.|+.+|+
T Consensus 198 ~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G 276 (284)
T cd04256 198 LLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEG 276 (284)
T ss_pred EEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcC
Confidence 99999999999997 69999999999988766643 356789985 888899999999999987763
Q ss_pred -CCCeEE
Q 008621 370 -APGTLI 375 (559)
Q Consensus 370 -~~GT~I 375 (559)
..||+|
T Consensus 277 ~~~GT~~ 283 (284)
T cd04256 277 KKVGTFF 283 (284)
T ss_pred CCCCEEe
Confidence 467876
|
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. |
| >TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-20 Score=210.90 Aligned_cols=236 Identities=17% Similarity=0.282 Sum_probs=167.3
Q ss_pred cceEEEEeCccccCCHH------HHHHHHHHHHcC--CCCCcEEEEc---CCCcccHHHHHhhHhhhhcCcCcchhhhHH
Q 008621 80 QLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLS---AMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~------~~~~va~iI~~~--~~~~~vVVVS---A~g~~Td~L~~~~~~~~~~~~~~~~~~~~l 148 (559)
.+.+|.|||||++.+.+ .+.++++.|... .+.+.|+|+| |+|..+..+.+....
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~--------------- 71 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNS--------------- 71 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccc---------------
Confidence 46799999999998754 899999998864 2346677788 666666544322100
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccce
Q 008621 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI 228 (559)
Q Consensus 149 ~~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~ 228 (559)
+.. ...+..+...+..+.+.|+..-..++...|..+++.+ .|+
T Consensus 72 --------------~~~------------------~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~i~~-----aQ~ 114 (715)
T TIGR01092 72 --------------SFA------------------DLQKPQPELDGKACAAVGQSGLMALYETMFTQLDITA-----AQI 114 (715)
T ss_pred --------------ccc------------------ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----EEE
Confidence 000 0001112233444567777766677777777777764 666
Q ss_pred EEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCc---------chhHHHHHHHHcC
Q 008621 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG---------SDLTATTIGKALG 299 (559)
Q Consensus 229 ~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgG---------SD~tAa~lA~~L~ 299 (559)
++|.++|.+.+. +.+..+.+. .|++.|.|||+.| +|.+++.+++| +|++|+++|.+|+
T Consensus 115 -Llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVin~-------nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~ 181 (715)
T TIGR01092 115 -LVTDLDFRDEQF----RRQLNETVH-ELLRMNVVPVVNE-------NDAVSTRAAPYSDSQGIFWDNDSLAALLALELK 181 (715)
T ss_pred -EechhhcccHHH----HHHHHHHHH-HHHHCCCEEEEcC-------CCcccccccccccccceecchHHHHHHHHHHcC
Confidence 888888776543 233344444 4568899999954 45666666654 7999999999999
Q ss_pred cCcEEEeeCCcccccCCCCCCCCCccccccCHHHHH-HHHH-----cCCCcchH--hHHHHHHhCCCCEEEecCCCCC--
Q 008621 300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA-ELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN-- 369 (559)
Q Consensus 300 A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~-eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~-- 369 (559)
|+.+++||||||||++||+ .|++++|++++..+.. ++.+ .+...|.| +++..+.++|++++|.|+.+|+
T Consensus 182 Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l 260 (715)
T TIGR01092 182 ADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNI 260 (715)
T ss_pred CCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchH
Confidence 9999999999999999996 6999999999876554 3322 34567888 5888999999999999987763
Q ss_pred -------CCCeEEecCCCC
Q 008621 370 -------APGTLIRRSRDM 381 (559)
Q Consensus 370 -------~~GT~I~~~~~~ 381 (559)
..||+|.+...|
T Consensus 261 ~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 261 TKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred HHHhcCCCCceEecccchh
Confidence 469999876544
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. |
| >COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=183.33 Aligned_cols=230 Identities=21% Similarity=0.391 Sum_probs=176.5
Q ss_pred CcceEEEEeCccccCC------HHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 79 KQLTCVMKFGGSSLAS------AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~------~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
+.+.+|.|+|-|++.+ .+.+..+++.|.... ..+.||+||.+. +. ++.
T Consensus 5 ~~~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGA-ia-----aG~------------------- 59 (369)
T COG0263 5 SARRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGA-IA-----AGR------------------- 59 (369)
T ss_pred cceEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccch-hh-----hCh-------------------
Confidence 4567999999999975 467777777777653 345666666422 21 100
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
..|+.+. +......+..+.+.|+..-+..+...|..+|++. .|+ ++
T Consensus 60 --------~~Lg~~~--------------------rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v-----~Qi-LL 105 (369)
T COG0263 60 --------TRLGLPK--------------------RPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKV-----GQI-LL 105 (369)
T ss_pred --------hhcCCCC--------------------CCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCee-----eEE-Ee
Confidence 1233221 1223355677889999999999999999999986 455 78
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceee--ecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~t--lgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
|.+++.+.+ .|.+.+..+.. |++.|.|||| || |+.+.+ +-.|+||..++++|...+||.++++||+
T Consensus 106 Tr~D~~~r~----ry~Nar~Tl~~-Ll~~gvVPII------NE-NDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDi 173 (369)
T COG0263 106 TRDDFSDRR----RYLNARNTLSA-LLELGVVPII------NE-NDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDI 173 (369)
T ss_pred ehhhhhhHH----HHHHHHHHHHH-HHHCCceeee------cC-CCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEcc
Confidence 887776543 56667777765 5789999999 74 776644 7799999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchHh--HHHHHHhCCCCEEEecCCCCC---------CC
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN---------AP 371 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~--~Ea~eLa~-----~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~ 371 (559)
||+||+|||.+|+|++|++++- .|...++. +|...|.-| |.+.|.++|+|+.|.|+.+|+ ..
T Consensus 174 DGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~ 253 (369)
T COG0263 174 DGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAV 253 (369)
T ss_pred CcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCC
Confidence 9999999999999999999874 46666765 466788865 999999999999999999875 57
Q ss_pred CeEEecCC
Q 008621 372 GTLIRRSR 379 (559)
Q Consensus 372 GT~I~~~~ 379 (559)
||++.+..
T Consensus 254 GT~F~~~~ 261 (369)
T COG0263 254 GTLFEPQA 261 (369)
T ss_pred ccEEecCC
Confidence 99998654
|
|
| >PTZ00489 glutamate 5-kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-19 Score=178.83 Aligned_cols=228 Identities=18% Similarity=0.233 Sum_probs=156.6
Q ss_pred cceEEEEeCccccCCH-----HHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASA-----ERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~-----~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (559)
.+.+|.|+|||.+.+. +.+..+++++....+.+.||+||.++ +.--...
T Consensus 8 ~~riVIKlG~Svit~~~~~~~~~~~~l~~~i~~l~~~~~vilVssGa-va~g~~~------------------------- 61 (264)
T PTZ00489 8 VKRIVVKVGSSILVDNQEIAAHRIEALCRFIADLQTKYEVILVTSGA-VAAGYTK------------------------- 61 (264)
T ss_pred CCEEEEEeccceeeCCCCcCHHHHHHHHHHHHHHhcCCeEEEEecCh-HhcChhh-------------------------
Confidence 4568999999999653 55888888887754445566666322 3211100
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
++.. +. ....+..+.+.|+..-..++...|.++|+++. |+ ++|..
T Consensus 62 -------~~~~---------------------~~-~~~~~qa~aaiGq~~L~~~y~~~f~~~~~~~a-----qi-Llt~~ 106 (264)
T PTZ00489 62 -------KEMD---------------------KS-YVPNKQALASMGQPLLMHMYYTELQKHGILCA-----QM-LLAAY 106 (264)
T ss_pred -------cCCC---------------------cc-ccHHHHHHHHhCHHHHHHHHHHHHHhCCCeEE-----Ee-eeecc
Confidence 0100 00 11234556678987788889999999999873 33 46665
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
++.+.. .+.+..+.+. .|++.|.|||+.|.-. . ..++ +-.|++|..|+++|..++|+.++|+|||||||+
T Consensus 107 d~~~~~----~~~n~~~~l~-~lL~~g~VPIinend~-~-~~~e---~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~ 176 (264)
T PTZ00489 107 DLDSRK----RTINAHNTIE-VLISHKVIPIINENDA-T-ALHE---LVFGDNDRLSALVAHHFKADLLVILSDIDGYYT 176 (264)
T ss_pred ccccch----hhHHHHHHHH-HHHHCCCEEEECCCCC-c-ccce---eEeCChHHHHHHHHHHhCCCEEEEeeccCeeEc
Confidence 554321 2233344444 3568899999977211 1 1122 235679999999999999999999999999999
Q ss_pred CCCCCCCCCcc---ccccCHHHHHHHH----HcCCCcchHh--HHHHHHhCCCCEEEecCCCCC-----------CCCeE
Q 008621 315 CDPNIHPHAKP---VPYLTFDEAAELA----YFGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN-----------APGTL 374 (559)
Q Consensus 315 aDP~~v~~a~~---i~~ls~~Ea~eLa----~~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~-----------~~GT~ 374 (559)
+||+..|+|++ ++++++++..... ..|...|.+| ++..+.++|++++|.|+.+|+ ..||+
T Consensus 177 ~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~ 256 (264)
T PTZ00489 177 ENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTL 256 (264)
T ss_pred CCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceE
Confidence 99999999998 7888987764432 2355678775 888999999999999987763 25898
Q ss_pred EecC
Q 008621 375 IRRS 378 (559)
Q Consensus 375 I~~~ 378 (559)
|.+.
T Consensus 257 ~~~~ 260 (264)
T PTZ00489 257 FYPR 260 (264)
T ss_pred Eeec
Confidence 8654
|
|
| >TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=178.01 Aligned_cols=235 Identities=14% Similarity=0.164 Sum_probs=160.5
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~~~-~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
++.|.|+||+.+.++ .+..+++.|..... ..++|+|++.|..-+++++
T Consensus 18 ~~~ViK~GG~~~~~~-~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~------------------------------ 66 (429)
T TIGR01890 18 KTFVVGLGGELVEGG-NLGNIVADIALLHSLGVRLVLVHGARPQIERILA------------------------------ 66 (429)
T ss_pred CEEEEEEChhhccCc-cHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHH------------------------------
Confidence 679999999999875 34677777765432 3345566666655444432
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceE-----EecccceEEEEec
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKAR-----QYDAFDIGFITTD 234 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~-----~l~~~~~~iit~~ 234 (559)
.+++++ ++++|++++.+.+.....++ .| .+|..|.+ .|++. +++. .+.+.|.++++..
T Consensus 67 -~~g~~~-----------~~~~G~RvT~~~~l~~~~~~--~g-~vn~~l~~-~l~~~-~~~~~~~~~~l~~~dg~~~~a~ 129 (429)
T TIGR01890 67 -ARGRTP-----------HYHRGLRVTDEASLEQAQQA--AG-TLRLAIEA-RLSMS-LSNTPMAGSRLPVVSGNFVTAR 129 (429)
T ss_pred -HcCCCc-----------eeeCCcccCCHHHHHHHHHH--hC-hHHHHHHH-HHHhc-CCcccccccCceEccceEEEEE
Confidence 123332 34567666543333333332 45 66766554 56665 4443 3666676677643
Q ss_pred C--------CCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEE
Q 008621 235 D--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (559)
Q Consensus 235 ~--------~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i 305 (559)
. ++. +++..++.+.++ .+++.|.+||+++ +|.+ .+|+.++++ +|..|+.||.+|+|+++++
T Consensus 130 ~~~~~~~~~~g~~G~v~~v~~~~l~-----~ll~~g~ipvi~p-i~~~-~~g~~~nvn---aD~~A~~lA~al~a~kli~ 199 (429)
T TIGR01890 130 PIGVIEGVDYEHTGVIRKIDTEGIR-----RQLDAGSIVLLSP-LGHS-PTGETFNLD---MEDVATSVAISLKADKLIY 199 (429)
T ss_pred ECCCCcCccccccceEEEEcHHHHH-----HHHHCCCeEEECC-cccC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEE
Confidence 2 332 456666665444 3457889999998 7888 489999999 9999999999999999999
Q ss_pred eeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCc-chHh--HHHHHHhCCC-CEEEecCCCC----------CCC
Q 008621 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQV-LHPQ--SMRPAREGDI-PVRVKNSYNP----------NAP 371 (559)
Q Consensus 306 ~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~v-lhp~--a~~~a~~~~I-pv~I~n~~~p----------~~~ 371 (559)
+|||||||+. +.++|++|+.+|+.++....... +.|+ ++.-+.+.|+ +++|.|+..| ++.
T Consensus 200 ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~ 273 (429)
T TIGR01890 200 FTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGI 273 (429)
T ss_pred EeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCC
Confidence 9999999963 36799999999999987643333 4676 6666778886 5999987655 347
Q ss_pred CeEEecCC
Q 008621 372 GTLIRRSR 379 (559)
Q Consensus 372 GT~I~~~~ 379 (559)
||+|..+.
T Consensus 274 GT~i~~d~ 281 (429)
T TIGR01890 274 GTSISKEA 281 (429)
T ss_pred cceEeccc
Confidence 99998653
|
This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. |
| >cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=160.62 Aligned_cols=207 Identities=11% Similarity=0.087 Sum_probs=153.3
Q ss_pred CCcceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHH
Q 008621 78 EKQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (559)
Q Consensus 78 ~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 155 (559)
..++..|.|+||+.+.+++.+..++..+.-.. +-++|+|+.++..++..|. . .
T Consensus 33 ~~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~---~----~------------------ 87 (271)
T cd04236 33 DWPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS---D----L------------------ 87 (271)
T ss_pred CCCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc---C----C------------------
Confidence 56788999999999999999999999888653 4577777755544433332 0 0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec-
Q 008621 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (559)
Q Consensus 156 ~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (559)
......+++. ..+.. +...|++.|++++++.+.. .+++..
T Consensus 88 ----------------------------------~~~~~~~v~~---~~n~~-Lv~~L~~~G~~A~gl~g~~-~~i~a~~ 128 (271)
T cd04236 88 ----------------------------------ELQAARSRLV---KDCKT-LVEALQANSAAAHPLFSGE-SVLQAEE 128 (271)
T ss_pred ----------------------------------cchheehhHH---HHHHH-HHHHHHhCCCCeeeecCcc-ceEEEEE
Confidence 0000112222 34555 4467899999999999874 466543
Q ss_pred --CCCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 235 --DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 235 --~~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
+++. +++..++...++. +++.|.|||++| +|.+ .+|++.+++ +|..|+.+|.+|+|++++++||++|
T Consensus 129 ~~d~g~vG~V~~Vd~~~I~~-----lL~~g~IPVisp-lg~~-~~G~~~NiN---aD~~A~~lA~aL~A~KLIfltd~~G 198 (271)
T cd04236 129 PEPGASKGPSVSVDTELLQW-----CLGSGHIPLVCP-IGET-SSGRSVSLD---SSEVTTAIAKALQPIKVIFLNRSGG 198 (271)
T ss_pred cccCCccceEEEECHHHHHH-----HHhCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 2222 4566666654443 457899999999 8888 489999999 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCH-HHHHHHHHcCC--Ccc---hHh--HHHHHHhCCCCEEEec
Q 008621 312 VLTCDPNIHPHAKPVPYLTF-DEAAELAYFGA--QVL---HPQ--SMRPAREGDIPVRVKN 364 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~-~Ea~eLa~~Ga--~vl---hp~--a~~~a~~~~Ipv~I~n 364 (559)
||+. +.++|++|+. +|..+|...|. ..| -|+ ++.-+...+..++|.+
T Consensus 199 V~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~ 253 (271)
T cd04236 199 LRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS 253 (271)
T ss_pred eECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC
Confidence 9963 2578999995 99999998865 566 453 6777788999999987
|
Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF). |
| >cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=162.76 Aligned_cols=223 Identities=19% Similarity=0.240 Sum_probs=147.8
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
++++|.|+||+.+.++ .++.+++.|.... +.++|+| ++.|..-+++++.
T Consensus 18 ~~~~VIKlGG~ai~~~-~l~~~~~~ia~l~~~g~~~ViV-HGggp~i~~~~~~--------------------------- 68 (280)
T cd04237 18 GKTFVIAFGGEAVAHP-NFDNIVHDIALLHSLGIRLVLV-HGARPQIDQRLAE--------------------------- 68 (280)
T ss_pred CCEEEEEEChHHhcCc-hHHHHHHHHHHHHHCCCcEEEE-eCCCHHHHHHHHH---------------------------
Confidence 3579999999999774 4566777666543 2344555 5555544433321
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecc-----cceEEE
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDA-----FDIGFI 231 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~-----~~~~ii 231 (559)
++.++ ++++|++.+ ++...+.+ .++|+. +.. +.+.|+. |++++.+.+ .+..++
T Consensus 69 ----~gi~~-----------~~~~G~RvT---~~~~l~~~~~~~g~v-~~~-l~~~l~~-~~~a~~~~~~~~~~~~~~~v 127 (280)
T cd04237 69 ----RGLEP-----------RYHRGLRIT---DAAALECVKEAAGAV-RLE-IEALLSM-GLPNSPMAGARIRVVSGNFV 127 (280)
T ss_pred ----cCCCc-----------cccCCcCcC---CHHHHHHHHHHHHHH-HHH-HHHHHHh-hccccCcCCCceEEecCeEE
Confidence 12221 234454443 33444333 235644 666 4555655 888875543 232233
Q ss_pred EecCC--------C-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCc
Q 008621 232 TTDDF--------T-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQE 302 (559)
Q Consensus 232 t~~~~--------~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~ 302 (559)
..... + .+++...+...+. .+++.|.+||+++ +|.+ .+|+.++++ +|..|+.||.+|+|++
T Consensus 128 ~~~~~~~~~~~~~g~~G~v~~v~~~~i~-----~lL~~g~ipv~~~-~g~~-~~g~~lnvn---aD~~A~~LA~~L~a~k 197 (280)
T cd04237 128 TARPLGVVDGVDFGHTGEVRRIDADAIR-----RQLDQGSIVLLSP-LGYS-PTGEVFNLS---MEDVATAVAIALKADK 197 (280)
T ss_pred EEEECCcccCceEeeeccEEEEcHHHHH-----HHHHCCCEEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHHcCCCE
Confidence 33221 1 1334444444333 3467889999988 6777 479999998 8999999999999999
Q ss_pred EEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCC---CcchHh--HHHHHHhCCC-CEEEecCCCC
Q 008621 303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA---QVLHPQ--SMRPAREGDI-PVRVKNSYNP 368 (559)
Q Consensus 303 l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga---~vlhp~--a~~~a~~~~I-pv~I~n~~~p 368 (559)
++|.|||||||++ +++++++++.+|+.++...|. ..|.|| ++..+.+.|+ +++|.+...|
T Consensus 198 lv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~ 263 (280)
T cd04237 198 LIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAED 263 (280)
T ss_pred EEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 9999999999973 368999999999999998764 679997 6666678899 6999988666
|
Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >PRK12353 putative amino acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=162.73 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=89.7
Q ss_pred HhhchhcCCcEEEEcCC--CcccCCCCceeeec-CCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCcccccc
Q 008621 253 LHGDWITDLAIPIVTGF--LGKAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329 (559)
Q Consensus 253 l~~~l~~~~~ipVv~Gf--ig~~~~~G~~~tlg-RgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~l 329 (559)
..+.|++.|.|||++|. ++....++.+.+.. .+.+|..|+++|.+|+|+.++++|||||||++||+ |++++|+++
T Consensus 177 ~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~~--~~a~~i~~i 254 (314)
T PRK12353 177 AIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFGK--PNQKKLDEV 254 (314)
T ss_pred HHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCCC--CCCeECcCc
Confidence 33345688999999976 22211234332211 45689999999999999999999999999997663 899999999
Q ss_pred CHHHHHHHHH---cCCCcchHh--HH-HHH-HhCCCCEEEecCCCC-----CCCCeEEec
Q 008621 330 TFDEAAELAY---FGAQVLHPQ--SM-RPA-REGDIPVRVKNSYNP-----NAPGTLIRR 377 (559)
Q Consensus 330 s~~Ea~eLa~---~Ga~vlhp~--a~-~~a-~~~~Ipv~I~n~~~p-----~~~GT~I~~ 377 (559)
+++|+.++.. .+...|.|| ++ +.+ .+.+++++|.|..+. ...||+|.+
T Consensus 255 ~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~~GT~i~~ 314 (314)
T PRK12353 255 TVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGKAGTVIVK 314 (314)
T ss_pred CHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCCCCeEecC
Confidence 9999999875 345678886 44 445 478999999873211 126888853
|
|
| >PRK05279 N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-16 Score=168.61 Aligned_cols=233 Identities=19% Similarity=0.247 Sum_probs=154.3
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~~~-~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
+++|.|+||+.+.+++ ++++++.|..... ..++|+|++.|..-+++++.
T Consensus 26 ~~~VIk~GG~~l~~~~-~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~----------------------------- 75 (441)
T PRK05279 26 KTFVIMLGGEAIAHGN-FSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAA----------------------------- 75 (441)
T ss_pred CEEEEEECchhccChh-HHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHH-----------------------------
Confidence 5799999999998753 5677777766432 23444555555544443321
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccce-----EEEEe
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDI-----GFITT 233 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~-----~iit~ 233 (559)
++.++ ++++|++++. +...+.+ ...| .++..+ .+.|+ .|++++++.+..+ .+++.
T Consensus 76 --~g~~~-----------~~~~G~RvT~---~~~l~~~~~~~g-~v~~~l-~~~l~-~g~~a~~~~~~~~~~~~~~~~~~ 136 (441)
T PRK05279 76 --RGIEP-----------RYHKGLRVTD---AAALECVKQAAG-ELRLDI-EARLS-MGLPNTPMAGAHIRVVSGNFVTA 136 (441)
T ss_pred --cCCCc-----------eecCCcccCC---HHHHHHHHHHHH-HHHHHH-HHHHh-ccCCCCcccCCcceEeeccEEEE
Confidence 22222 2345555543 3333333 2346 778775 55565 4999877654332 22222
Q ss_pred cC--------CCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEE
Q 008621 234 DD--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (559)
Q Consensus 234 ~~--------~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~ 304 (559)
.. ++. +++...+...+. .+++.|.|||+++ +|.+ .+|++.+++ +|..|+.||.+|+|++++
T Consensus 137 ~~~~~~~~~~~g~~G~v~~v~~~~i~-----~ll~~g~ipV~~~-i~~~-~~g~~~ni~---~D~~a~~lA~~l~a~~lv 206 (441)
T PRK05279 137 RPLGVDDGVDYQHTGEVRRIDAEAIR-----RQLDSGAIVLLSP-LGYS-PTGESFNLT---MEEVATQVAIALKADKLI 206 (441)
T ss_pred EECCCCCCccccceeeEEEEeHHHHH-----HHHHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 21 221 334444444333 3467889999976 7777 479999998 999999999999999999
Q ss_pred EeeCCcccccCCCCCCCCCccccccCHHHHHHHHH---cC--CCcchHh--HHHHHHhCCC-CEEEecCCCCC-------
Q 008621 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY---FG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNPN------- 369 (559)
Q Consensus 305 i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~---~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p~------- 369 (559)
++|||||||++ ++++|++++.+|+.++.. .| ...|-|| ++..+.+.|+ +++|.+...|+
T Consensus 207 ~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~ 280 (441)
T PRK05279 207 FFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELF 280 (441)
T ss_pred EEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHh
Confidence 99999999953 478999999999998876 44 3678886 5556667799 69998876552
Q ss_pred ---CCCeEEecC
Q 008621 370 ---APGTLIRRS 378 (559)
Q Consensus 370 ---~~GT~I~~~ 378 (559)
+.||.|...
T Consensus 281 ~~~g~GT~i~~~ 292 (441)
T PRK05279 281 TRDGIGTMIVME 292 (441)
T ss_pred cCCCCceEEecC
Confidence 479999875
|
|
| >cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP) | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-16 Score=154.75 Aligned_cols=212 Identities=17% Similarity=0.274 Sum_probs=144.0
Q ss_pred EEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHHh
Q 008621 84 VMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (559)
Q Consensus 84 V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (559)
|.|+||+.+.+. +.++++.|.... +.++ |+|++.|..-+.+++ +
T Consensus 2 ViKiGG~~~~~~--l~~~~~di~~l~~~g~~~-VlVHGgg~~i~~~~~-------------------------------~ 47 (248)
T cd04252 2 VIKVGGAIIEDD--LDELAASLSFLQHVGLYP-IVVHGAGPQLNEELE-------------------------------A 47 (248)
T ss_pred EEEEChhhhhcc--HHHHHHHHHHHHHCCCcE-EEEeCCCHHHHHHHH-------------------------------H
Confidence 899999999874 677877777643 3355 555555554444432 1
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEe-----cC
Q 008621 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT-----DD 235 (559)
Q Consensus 162 L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~-----~~ 235 (559)
++.++ ++.+|++++ ++...+.+ .+++ .++..+++ .|+++|++++++.+. +++. .+
T Consensus 48 ~gi~~-----------~~~~g~RvT---~~~~l~~v~~al~-~vn~~iv~-~l~~~g~~a~~l~~~---~~~a~~~~~~d 108 (248)
T cd04252 48 AGVEP-----------EYVDGLRVT---DPETLAVARKVFL-EENLKLVE-ALERNGARARPITSG---VFEAEYLDKDK 108 (248)
T ss_pred cCCCc-----------EeeCCcccC---CHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCcccccCc---eEEEEECcCcc
Confidence 22222 233444333 34444443 3456 77887665 599999999999875 3333 23
Q ss_pred CCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 236 FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 236 ~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
|+. +++...+.+.++. +++.|.|||++| +|.+ .+|++.+++ +|..|+.+|.+|+|+++++.|||||||+
T Consensus 109 ~g~~G~v~~i~~~~i~~-----~L~~g~IPVi~p-~~~~-~~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~ 178 (248)
T cd04252 109 YGLVGKITGVNKAPIEA-----AIRAGYLPILTS-LAET-PSGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLD 178 (248)
T ss_pred CCccCceeeECHHHHHH-----HHHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCC
Confidence 432 4555556554443 457899999998 6777 479999999 9999999999999999999999999996
Q ss_pred CCCCCCCCCccccccCH-HHHHHHHHcCC--CcchHh--HHHHHHhC---CCCEEEec
Q 008621 315 CDPNIHPHAKPVPYLTF-DEAAELAYFGA--QVLHPQ--SMRPAREG---DIPVRVKN 364 (559)
Q Consensus 315 aDP~~v~~a~~i~~ls~-~Ea~eLa~~Ga--~vlhp~--a~~~a~~~---~Ipv~I~n 364 (559)
. +.+++++++. ++..++...|. ..|.|| ++..+.+. ...++|.+
T Consensus 179 ~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~ 230 (248)
T cd04252 179 G------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS 230 (248)
T ss_pred C------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4 3678999997 47778877653 567776 44455554 34577765
|
The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th |
| >PRK07431 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-16 Score=173.90 Aligned_cols=146 Identities=25% Similarity=0.400 Sum_probs=124.4
Q ss_pred ccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-------CceeEEEeCCCchhhHHHHHHH
Q 008621 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWSRELIQQA 454 (559)
Q Consensus 382 ~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-------e~sIs~~v~~~~~~~~~~~~~~ 454 (559)
++..+++|+.++|+++|++. .+.+.+|+++++|+.|+++||+++|++++ ..+++|+++.+++..
T Consensus 426 ~~~~v~gIa~~~~~~~i~l~--~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~------- 496 (587)
T PRK07431 426 DEPEVRGVALDRNQAQLAIR--NVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREA------- 496 (587)
T ss_pred CCCcEEEEEccCCEEEEEEC--CCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHH-------
Confidence 34579999999999999996 57889999999999999999999999874 367999998875431
Q ss_pred HHHHHHHHHHhh---hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHH
Q 008621 455 SELDHVVEELEK---IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQC 530 (559)
Q Consensus 455 ~~l~~~~~~L~~---~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kA 530 (559)
...+++++++ ...+.+.+++|+||+||. |...||+++|+|++|+++||++.++++ |+++|+|+|++++.++|
T Consensus 497 --~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~--S~~~Is~vV~~~~~~~a 572 (587)
T PRK07431 497 --AQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIAT--SEIRTSCVVAEDDGVKA 572 (587)
T ss_pred --HHHHHHHHHHhcCCceEEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeec--cceEEEEEEeHHHHHHH
Confidence 2223333432 244677899999999997 778999999999999999999999986 99999999999999999
Q ss_pred HHHHHHHhcc
Q 008621 531 VRALHETFFE 540 (559)
Q Consensus 531 v~~LH~~f~~ 540 (559)
+++||++|..
T Consensus 573 v~~Lh~~f~~ 582 (587)
T PRK07431 573 LQAVHQAFGL 582 (587)
T ss_pred HHHHHHHhcc
Confidence 9999999943
|
|
| >PLN02825 amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=162.51 Aligned_cols=197 Identities=14% Similarity=0.167 Sum_probs=138.4
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
.++.|.||||+.+.++ .+..++..|.... +.++|+|+.+...++..|-+.
T Consensus 17 gktfVIk~gG~~l~~~-~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~--------------------------- 68 (515)
T PLN02825 17 GSTFVVVISGEVVAGP-HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAER--------------------------- 68 (515)
T ss_pred CCEEEEEECchhhcCc-hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHc---------------------------
Confidence 4679999999999887 6888888877643 445565554444444444322
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHH--------HHHHcCCce----EEecc
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAA--------YLNKIGVKA----RQYDA 225 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~--------~L~~~Gi~a----~~l~~ 225 (559)
++++ ++.+|++++++ ...+.+.-..-.++..|.+. .|++.|+++ ..+.+
T Consensus 69 -----gi~~-----------~f~~G~RVTd~---~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~ 129 (515)
T PLN02825 69 -----GREP-----------KYVGAYRITDS---AALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSV 129 (515)
T ss_pred -----CCCc-----------eeeCCcccCCH---HHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEe
Confidence 2222 24455555543 33332222222556666654 589999999 78888
Q ss_pred cceEEEEecC--------CCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHH
Q 008621 226 FDIGFITTDD--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGK 296 (559)
Q Consensus 226 ~~~~iit~~~--------~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~ 296 (559)
.+..+++..+ |+. +++..++...++. +++.|.|||+++ +|.+ .+|++.|++ +|..|+.+|.
T Consensus 130 ~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~-----~L~~g~Ipvisp-lg~s-~~Ge~~Nin---aD~vA~avA~ 199 (515)
T PLN02825 130 ASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKE-----RLDSNCIVLLSN-LGYS-SSGEVLNCN---TYEVATACAL 199 (515)
T ss_pred ccCcEEEEEECCCCcCccccceeeEEEEcHHHHHH-----HHhCCCeEEECC-ceEC-CCCCEEeeC---HHHHHHHHHH
Confidence 8877888753 333 4566666654443 457899999999 7988 589999999 9999999999
Q ss_pred HcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHc
Q 008621 297 ALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF 340 (559)
Q Consensus 297 ~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~ 340 (559)
+|+|++++++||++ +++. +.+++++|+.+|+.+|...
T Consensus 200 aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~ 236 (515)
T PLN02825 200 AIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRK 236 (515)
T ss_pred HcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHh
Confidence 99999999999977 5542 3578999999999998754
|
|
| >PRK12352 putative carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=153.75 Aligned_cols=239 Identities=15% Similarity=0.144 Sum_probs=147.4
Q ss_pred cceEEEEeCccccCCH----------HHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhH
Q 008621 80 QLTCVMKFGGSSLASA----------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDE 147 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~----------~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~ 147 (559)
++++|.||||..+.+. +.++++++.|.... +.++|+|+.+...+.+.|.+.....
T Consensus 2 ~k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~------------- 68 (316)
T PRK12352 2 KELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAH------------- 68 (316)
T ss_pred CcEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCccc-------------
Confidence 3589999999999761 46677777776643 4566666655555666655432110
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCce-------
Q 008621 148 LSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKA------- 220 (559)
Q Consensus 148 l~~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a------- 220 (559)
++ ++++.+... ..........|-.+++.|. ..|.+.|.++
T Consensus 69 ------------------------------~~-~g~rvt~~~-~~v~~~~g~i~~~i~~~L~-~~l~~~g~~~~~~vvt~ 115 (316)
T PRK12352 69 ------------------------------ER-EGLPLTPLA-NCVADTQGGIGYLIQQALN-NRLARHGEKKAVTVVTQ 115 (316)
T ss_pred ------------------------------cc-CCCCCCCHH-HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCeeEEEEE
Confidence 01 122211110 1111223344667777754 5688878664
Q ss_pred EEecccceEEEEecC--------------------CCC----ce-----------eeecchHHHHHHHhhchhcCCcEEE
Q 008621 221 RQYDAFDIGFITTDD--------------------FTN----AD-----------ILEATYPAVAKRLHGDWITDLAIPI 265 (559)
Q Consensus 221 ~~l~~~~~~iit~~~--------------------~~~----a~-----------i~~~~~~~i~~~l~~~l~~~~~ipV 265 (559)
+.+++.|..|+...+ ++. .+ +..++. .+.+.|++++.|+|
T Consensus 116 v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~rrvv~sp~pv~~V~~-----~~I~~ll~~g~iVi 190 (316)
T PRK12352 116 VEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGYRRVVASPEPKRIVEA-----PAIKALIQQGFVVI 190 (316)
T ss_pred EEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCeEEecCCCCCceEEcH-----HHHHHHHHCCCEEE
Confidence 667777665542211 100 00 222333 34444567888944
Q ss_pred Ec-----CCCcccCCCCc----eeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHH
Q 008621 266 VT-----GFLGKAWRTCA----ITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAE 336 (559)
Q Consensus 266 v~-----Gfig~~~~~G~----~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~e 336 (559)
.+ + ++.+ ..|+ ..+.+ .|+.|+.+|.+|+|++++|+|||+|||.++|+ |++++|++++.+|+.+
T Consensus 191 ~~ggggiP-v~~~-~~g~~~n~~~nIn---aD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~~~~li~~lt~~e~~~ 263 (316)
T PRK12352 191 GAGGGGIP-VVRT-DAGDYQSVDAVID---KDLSTALLAREIHADILVITTGVEKVCIHFGK--PQQQALDRVDIATMTR 263 (316)
T ss_pred ecCCCCCC-EEeC-CCCCccCceeeec---HHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--CCcccccccCHHHHHH
Confidence 43 2 2222 1233 34466 89999999999999999999999999987764 6788999999999999
Q ss_pred HHHcC---CCcchHh---HHHHHHhCCCCEEEecCCC------CCCCCeEEec
Q 008621 337 LAYFG---AQVLHPQ---SMRPAREGDIPVRVKNSYN------PNAPGTLIRR 377 (559)
Q Consensus 337 La~~G---a~vlhp~---a~~~a~~~~Ipv~I~n~~~------p~~~GT~I~~ 377 (559)
+...| ...|-|| |++.+.+...+++|.+... .+ .||+|.+
T Consensus 264 li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 264 YMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGE-TGTHIIK 315 (316)
T ss_pred HHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcchHHHHHHHcCC-CCeEEEe
Confidence 98754 3578885 4444554555799986321 22 6888864
|
|
| >cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=141.86 Aligned_cols=97 Identities=23% Similarity=0.204 Sum_probs=77.5
Q ss_pred hcCCcEEEEcCCCc---ccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHH
Q 008621 258 ITDLAIPIVTGFLG---KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEA 334 (559)
Q Consensus 258 ~~~~~ipVv~Gfig---~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea 334 (559)
+..+.+||+.++-- .+ ..++..++. +|..|+.+|..|+|+.+++.|||||||++| ++++++++++|+
T Consensus 88 ~~~g~ipV~~P~~~~~~~~-~~~~~~~~t---tD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~ 157 (203)
T cd04240 88 LERGKIAILLPYRLLLDTD-PLPHSWEVT---SDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAEL 157 (203)
T ss_pred HHCCCcEEEeCchhhcccC-CCCcccccC---HHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHh
Confidence 35788999988521 12 133444455 999999999999999999999999999865 889999999876
Q ss_pred HHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC
Q 008621 335 AELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN 369 (559)
Q Consensus 335 ~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (559)
.+ ..++++-+.+.+.+.++|++|.|..+|+
T Consensus 158 ~~-----~~~id~~~~~~~~~~gi~v~I~~g~~~~ 187 (203)
T cd04240 158 LG-----ETSVDPAFPRLLTKYGIRCYVVNGDDPE 187 (203)
T ss_pred CC-----CCeehhhHHHHHHhCCCeEEEECCCCcc
Confidence 53 5677776777789999999999988773
|
Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. |
| >TIGR00746 arcC carbamate kinase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=148.29 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=115.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHH----HcCCceEEecc-cceEEEEecC--CCCce-ee-----ec----------------
Q 008621 194 RDYLVSFGECMSTRIFAAYLN----KIGVKARQYDA-FDIGFITTDD--FTNAD-IL-----EA---------------- 244 (559)
Q Consensus 194 ~d~ils~GE~lsa~ll~~~L~----~~Gi~a~~l~~-~~~~iit~~~--~~~a~-i~-----~~---------------- 244 (559)
+|.+.+.|+-+-+.++..+|+ ++|++...... .|. +++.++ |.++. +. +.
T Consensus 74 ~~~~~A~~qg~lg~~~~~~l~~~l~~~g~~~~v~~~vtqv-~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d 152 (310)
T TIGR00746 74 LDVLGAMSQGMIGYMLQQALNNELPKRGMEKPVATVLTQT-IVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKED 152 (310)
T ss_pred chHHHHhhHHHHHHHHHHHHHHHHHhcCCCccceEEEEEE-EECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeec
Confidence 577777788777787877777 88866533221 232 455444 33221 10 00
Q ss_pred ------------ch-HHHHHHHhhchhcCCcEEEEcCCCc--c-cCCCCceeee-cCCcchhHHHHHHHHcCcCcEEEee
Q 008621 245 ------------TY-PAVAKRLHGDWITDLAIPIVTGFLG--K-AWRTCAITTL-GRGGSDLTATTIGKALGLQEIQVWK 307 (559)
Q Consensus 245 ------------~~-~~i~~~l~~~l~~~~~ipVv~Gfig--~-~~~~G~~~tl-gRgGSD~tAa~lA~~L~A~~l~i~T 307 (559)
.+ ..+.....+.|++.|.++|.+|.-| . + .+|.+.+. -.+.+|.+|+++|..|+||.++++|
T Consensus 153 ~~~~~rrvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~-e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLT 231 (310)
T TIGR00746 153 AGRGWRRVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVL-EGAELKGVEAVIDKDLASEKLAEEVNADILVILT 231 (310)
T ss_pred CCCcceEeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEe-cCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEe
Confidence 00 0011123334567887666665322 2 3 24443211 1256999999999999999999999
Q ss_pred CCcccccCCCCCCCCCccccccCHHHHHHHHH---cCCCcchHh---HHHHHHhCCCCEEEecCCC------CCCCCeEE
Q 008621 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY---FGAQVLHPQ---SMRPAREGDIPVRVKNSYN------PNAPGTLI 375 (559)
Q Consensus 308 DV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~---~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~------p~~~GT~I 375 (559)
||||||+++ ..|++++|++++++|+.++.. ++...|.|| |++.+.+.+++++|.|..+ .+ .||+|
T Consensus 232 DVdGVy~~~--~~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I 308 (310)
T TIGR00746 232 DVDAVYINY--GKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRV 308 (310)
T ss_pred CCCceeCCC--CCCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEE
Confidence 999999964 348899999999999999974 456788885 4466677788999986321 23 68888
Q ss_pred ec
Q 008621 376 RR 377 (559)
Q Consensus 376 ~~ 377 (559)
.+
T Consensus 309 ~~ 310 (310)
T TIGR00746 309 TK 310 (310)
T ss_pred eC
Confidence 53
|
The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff. |
| >cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=141.37 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=89.1
Q ss_pred hhchhcCCcEEEEcCCCcccC--CCCceeeec-CCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccC
Q 008621 254 HGDWITDLAIPIVTGFLGKAW--RTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (559)
Q Consensus 254 ~~~l~~~~~ipVv~Gfig~~~--~~G~~~tlg-RgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls 330 (559)
.+.|+++|.|||+.|--|... .+|...+.. ...+|++|+++|..|+|+.++++|||||||+++| .|++++|++++
T Consensus 174 I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~i~~Is 251 (308)
T cd04235 174 IKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKALEQVT 251 (308)
T ss_pred HHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeEcCCcC
Confidence 334568899999987421110 123322211 2457999999999999999999999999999655 38999999999
Q ss_pred HHHHHHHHH---cCCCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeEE
Q 008621 331 FDEAAELAY---FGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLI 375 (559)
Q Consensus 331 ~~Ea~eLa~---~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I 375 (559)
++|+.++.. ++...|+|| |++.+.+.+.+++|.+..+. ...||+|
T Consensus 252 ~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~~~~i~~aL~G~~GT~I 307 (308)
T cd04235 252 VEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITSLENAEAALEGKAGTVI 307 (308)
T ss_pred HHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECCHHHHHHHHCCCCCeEE
Confidence 999999985 567899998 77788877889999763210 1258876
|
Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK). |
| >PRK12686 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.6e-13 Score=136.29 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=88.1
Q ss_pred HhhchhcCCcEEEEcCCCc---ccCCCCceeeec-CCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccc
Q 008621 253 LHGDWITDLAIPIVTGFLG---KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPY 328 (559)
Q Consensus 253 l~~~l~~~~~ipVv~Gfig---~~~~~G~~~tlg-RgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ 328 (559)
..+.|++.|.|||.+|--| .+ .+|...... .+.+|..|++||.+|+|+.++|+|||||||+ ||. .|++++|++
T Consensus 175 ~I~~Ll~~G~IpI~~GgggIPVv~-~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~-~~~-~p~ak~I~~ 251 (312)
T PRK12686 175 TIRTLVDGGNIVIACGGGGIPVIR-DDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI-NFN-KPNQQKLDD 251 (312)
T ss_pred HHHHHHHCCCEEEEeCCCCCCeEe-cCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc-CCC-CCCCeECCc
Confidence 3344568899999876522 12 245444432 4568999999999999999999999999999 455 488999999
Q ss_pred cCHHHHHHHHHc---CCCcchHh--HHHHHHh--CCCCEEEecCCCC-----CCCCeEEe
Q 008621 329 LTFDEAAELAYF---GAQVLHPQ--SMRPARE--GDIPVRVKNSYNP-----NAPGTLIR 376 (559)
Q Consensus 329 ls~~Ea~eLa~~---Ga~vlhp~--a~~~a~~--~~Ipv~I~n~~~p-----~~~GT~I~ 376 (559)
++.+|+.++... +...|.|| ++..+.+ .+.+++|.+..+. ...||+|.
T Consensus 252 I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~~GT~I~ 311 (312)
T PRK12686 252 ITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITSLEQAKEALAGNAGTHIT 311 (312)
T ss_pred cCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCCCCeEEe
Confidence 999999999754 45779997 4444443 3678888873221 12688885
|
|
| >PRK04531 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=139.48 Aligned_cols=110 Identities=21% Similarity=0.343 Sum_probs=81.3
Q ss_pred hcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCH-HHHHH
Q 008621 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF-DEAAE 336 (559)
Q Consensus 258 ~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~-~Ea~e 336 (559)
++.|.|||+++ +|.+ .+|++.+++ +|..|+.||.+|+|++++++|||+|||+.| .+++++|+. +|...
T Consensus 126 L~~g~IPVlsp-lg~~-~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~e~~~ 194 (398)
T PRK04531 126 LRAGSIPVIAS-LGET-PSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLSTEYDH 194 (398)
T ss_pred HHCCCEEEEeC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHHHHHHH
Confidence 46899999998 5777 479999999 999999999999999999999999999743 678999996 57777
Q ss_pred HHHcCC--CcchHh--HHHHHHhCCCC-EEEecCCCC----------CCCCeEEecCC
Q 008621 337 LAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAPGTLIRRSR 379 (559)
Q Consensus 337 La~~Ga--~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~GT~I~~~~ 379 (559)
|...|. ..|.|+ ++..+.+ ++| +++.....| ++.||+|....
T Consensus 195 l~~~~~vtgGM~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~ 251 (398)
T PRK04531 195 LMQQPWINGGMKLKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRGE 251 (398)
T ss_pred HHhcCCCCccHHHHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecCC
Confidence 765442 467775 4444443 333 333222223 35799998743
|
|
| >cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-13 Score=106.76 Aligned_cols=64 Identities=23% Similarity=0.511 Sum_probs=61.2
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
+++|++||. | ..+++++|+|++|.++||+++||+||+|+++||++|+++|.++|+++||++||+
T Consensus 2 ~a~VsvVG~gm-~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f~~ 66 (66)
T cd04915 2 VAIVSVIGRDL-STPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAALVE 66 (66)
T ss_pred EEEEEEECCCC-CcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHHhC
Confidence 689999997 6 589999999999999999999999999999999999999999999999999984
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas |
| >cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-13 Score=106.89 Aligned_cols=64 Identities=84% Similarity=1.138 Sum_probs=61.2
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
++|++||.+++.+++++|+|++|+++||++.||+||+|+++++|+|+++|.++|++.||++||.
T Consensus 2 a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~f~~ 65 (65)
T cd04918 2 SIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFFE 65 (65)
T ss_pred cEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHhC
Confidence 7899999977778999999999999999999999999999999999999999999999999974
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-11 Score=126.06 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=87.4
Q ss_pred hchhcCCcEEEEcCCCc---ccCCCCceeeec-CCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccC
Q 008621 255 GDWITDLAIPIVTGFLG---KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (559)
Q Consensus 255 ~~l~~~~~ipVv~Gfig---~~~~~G~~~tlg-RgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls 330 (559)
+.|++.|.|||++|.-| .+ .+|++.++. -...|.+|+++|..|+||.++|+|||||||++ |+ .|++++|++++
T Consensus 179 ~~LLe~G~IvI~~GgGGiPV~~-~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i~~It 255 (313)
T PRK12454 179 KALVENGFIVIASGGGGIPVIE-EDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPLDKVT 255 (313)
T ss_pred HHHHHCCCEEEEeCCCccceEc-CCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEccccC
Confidence 34568899999997521 23 256554432 24579999999999999999999999999986 43 47899999999
Q ss_pred HHHHHHHHHc---CCCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeEEe
Q 008621 331 FDEAAELAYF---GAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR 376 (559)
Q Consensus 331 ~~Ea~eLa~~---Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~ 376 (559)
++|+.++... +...|-|| |++.+.+.+.+++|.+..+. ...||+|.
T Consensus 256 ~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~~GT~I~ 312 (313)
T PRK12454 256 VEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIASLEKAVEALEGKTGTRII 312 (313)
T ss_pred HHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECchHHHHHHHCCCCCeEeC
Confidence 9999988753 45678885 44556666678998753220 12688885
|
|
| >COG1608 Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-11 Score=119.12 Aligned_cols=156 Identities=21% Similarity=0.190 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeee
Q 008621 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (559)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tl 282 (559)
.++.. ++..|.+.|++++..-|... .+. ++++.......+. .+++.+.|||+.|-+-.+..+| ...+
T Consensus 81 ~L~~~-V~~~l~~~Gv~av~~~P~s~--~~~----~gr~~~~~l~~i~-----~~l~~gfvPvl~GDVv~d~~~g-~~Ii 147 (252)
T COG1608 81 ELNSI-VVDALLDAGVRAVSVVPISF--STF----NGRILYTYLEAIK-----DALEKGFVPVLYGDVVPDDDNG-YEII 147 (252)
T ss_pred HHHHH-HHHHHHhcCCccccccCcce--eec----CCceeechHHHHH-----HHHHcCCEeeeecceEEcCCCc-eEEE
Confidence 34444 66789999999987666553 221 2233221122222 2357899999999877664223 3334
Q ss_pred cCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcC-C---Ccch--HhHHHHHHhC
Q 008621 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG-A---QVLH--PQSMRPAREG 356 (559)
Q Consensus 283 gRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G-a---~vlh--p~a~~~a~~~ 356 (559)
. .|-.+..||..|+++++.+.|||||||+.||..+|+++.++++...+ .+...+ . ..|- -+++..+.+.
T Consensus 148 S---GDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~--~~~gs~~~DVTGGi~~Kl~~~~~~~~~ 222 (252)
T COG1608 148 S---GDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRV--ALGGSGGTDVTGGIAKKLEALLEIARY 222 (252)
T ss_pred e---ccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhh--hhcCcCcccchhhHHHHHHHHHHHHhc
Confidence 3 59999999999999999999999999999999999999988876542 221112 1 1233 3466667778
Q ss_pred CCCEEEecCCCCC---------CCCeEEe
Q 008621 357 DIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 357 ~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
+-++++.|+..|+ ..||+|.
T Consensus 223 ~~~vyi~ng~~~~ni~~~l~G~~vGT~I~ 251 (252)
T COG1608 223 GKEVYIFNGNKPENIYRALRGENVGTRID 251 (252)
T ss_pred CceEEEECCCCHHHHHHHhcCCCCceEec
Confidence 8889999988764 5788885
|
|
| >KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-12 Score=123.54 Aligned_cols=156 Identities=15% Similarity=0.263 Sum_probs=116.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCC
Q 008621 196 YLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWR 275 (559)
Q Consensus 196 ~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~ 275 (559)
.+.+.|+.=-..++-..|.++|+.. .|+ ++|..++.+. ..+.++...+.+ |+.-+.|||+ |+
T Consensus 91 A~AAvGQ~~Lmalye~lF~Qy~~~i-----AQv-LvT~~Di~d~----~~r~Nl~~Ti~e-LL~m~viPIv------Ne- 152 (285)
T KOG1154|consen 91 ACAAVGQSGLMALYETLFTQYGITI-----AQV-LVTRNDILDE----QQRKNLQNTISE-LLSMNVIPIV------NE- 152 (285)
T ss_pred HHHHhCcchHHHHHHHHHHHhccch-----hee-eecCcchhhH----HHHHHHHHHHHH-HHhCCceeee------cC-
Confidence 4566677666677888899999976 455 7776665433 356677777665 5678999999 53
Q ss_pred CCcee--eecCCc---chhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHH-H-----HHHcCCCc
Q 008621 276 TCAIT--TLGRGG---SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA-E-----LAYFGAQV 344 (559)
Q Consensus 276 ~G~~~--tlgRgG---SD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~-e-----La~~Ga~v 344 (559)
|+.+. -..+|. ||..|+++|+.++||.++++|||||+||..|. ...+++++..+..+.. + -+..|...
T Consensus 153 NDavs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd-~~~~~li~~~~~~~~~v~~tfG~~SkvGtGG 231 (285)
T KOG1154|consen 153 NDAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPD-ADPSKLIHTFSPGDPQVSTTFGSKSKVGTGG 231 (285)
T ss_pred CCccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCC-CCcceeeeeeccCCCCCccccCccCccCcCc
Confidence 44432 255677 99999999999999999999999999995554 3457788887766554 2 23345668
Q ss_pred chHh--HHHHHHhCCCCEEEecCCCCCC
Q 008621 345 LHPQ--SMRPAREGDIPVRVKNSYNPNA 370 (559)
Q Consensus 345 lhp~--a~~~a~~~~Ipv~I~n~~~p~~ 370 (559)
|..| |..-|...|+++.|.|+..|+.
T Consensus 232 M~tKv~AA~~A~~~Gv~viI~~g~~p~~ 259 (285)
T KOG1154|consen 232 METKVKAAVNALNAGVSVIITNGDAPEN 259 (285)
T ss_pred chhhHHHHHHHhcCCceEEEeCCCChHH
Confidence 8764 8889999999999999999975
|
|
| >PRK12354 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=127.54 Aligned_cols=123 Identities=20% Similarity=0.135 Sum_probs=88.3
Q ss_pred HhhchhcCCcEEEEcCCCccc---CCCCceeeec-CCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccc
Q 008621 253 LHGDWITDLAIPIVTGFLGKA---WRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPY 328 (559)
Q Consensus 253 l~~~l~~~~~ipVv~Gfig~~---~~~G~~~tlg-RgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ 328 (559)
..+.|++.+.|||.+|.=|.. ...|...... ..++|.+|++||..|+|+.++|+|||||||++++ .|++++|++
T Consensus 167 ~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i~~ 244 (307)
T PRK12354 167 PIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAIAQ 244 (307)
T ss_pred HHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeECCC
Confidence 333456788988876432221 0123332221 4579999999999999999999999999999754 478999999
Q ss_pred cCHHHHHHHHHcCCCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeEEecC
Q 008621 329 LTFDEAAELAYFGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIRRS 378 (559)
Q Consensus 329 ls~~Ea~eLa~~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~~ 378 (559)
++++|+.++ .++...|-|| |++.+.+.+.+++|.+..+. ...||+|.+.
T Consensus 245 it~~e~~~~-~f~~GgM~pKV~AA~~~~~~gg~~viI~~~~~l~~al~G~~GT~I~~~ 301 (307)
T PRK12354 245 ATPDELREL-GFAAGSMGPKVEAACEFVRATGKIAGIGSLEDIQAILAGEAGTRISPE 301 (307)
T ss_pred CCHHHHHhh-CCCcCChHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCCceEEecC
Confidence 999999998 6788899997 44555666768888642210 1269999764
|
|
| >cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-11 Score=96.65 Aligned_cols=62 Identities=26% Similarity=0.501 Sum_probs=58.8
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
+++|+++|. |...+|+++|+|++|.++||++.++++ |+++|+|+|++++.++|+++||++|+
T Consensus 1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~--Se~~is~~v~~~~~~~av~~Lh~~f~ 63 (64)
T cd04937 1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD--SHTTISCLVSEDDVKEAVNALHEAFE 63 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc--CccEEEEEEcHHHHHHHHHHHHHHhc
Confidence 478999997 888999999999999999999998887 89999999999999999999999996
|
This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th |
| >cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=96.97 Aligned_cols=62 Identities=27% Similarity=0.501 Sum_probs=57.0
Q ss_pred eEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 477 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 477 aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
|+||+||. |...+++++|+|++|.+. +|.++++|+|+++|||+|+++|.++++++||++||+
T Consensus 1 a~VsvVG~g~~~~~gv~~~~~~~L~~~--~i~~i~~~~s~~~is~vv~~~d~~~av~~LH~~f~~ 63 (63)
T cd04920 1 AAVSLVGRGIRSLLHKLGPALEVFGKK--PVHLVSQAANDLNLTFVVDEDQADGLCARLHFQLIE 63 (63)
T ss_pred CEEEEECCCcccCccHHHHHHHHHhcC--CceEEEEeCCCCeEEEEEeHHHHHHHHHHHHHHHhC
Confidence 58999997 778999999999999764 677799999999999999999999999999999984
|
This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-11 Score=96.16 Aligned_cols=63 Identities=32% Similarity=0.657 Sum_probs=59.1
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
+++|++||. +...+++++|+|++|+ ++++.+++||+|+++++|+|+++|.++++++||++||.
T Consensus 1 ~alIsvvG~~~~~~~~v~~~i~~~L~--~i~i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~f~~ 64 (64)
T cd04917 1 LALVALIGNDISETAGVEKRIFDALE--DINVRMICYGASNHNLCFLVKEEDKDEVVQRLHSRLFE 64 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHH--hCCeEEEEEecCccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 489999997 7788999999999996 58999999999999999999999999999999999984
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-11 Score=95.88 Aligned_cols=65 Identities=32% Similarity=0.589 Sum_probs=61.7
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
+++|+++|. +...+++.+++|++|++.||++.||+|+.|+.+++|++++++.+++++.||++||+
T Consensus 1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~~a~~~lh~~~~~ 66 (66)
T cd04919 1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIHTNLLE 66 (66)
T ss_pred CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHhC
Confidence 479999997 77889999999999999999999999999999999999999999999999999984
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.2e-11 Score=94.47 Aligned_cols=65 Identities=35% Similarity=0.651 Sum_probs=61.5
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
+++|+++|. +...+++.+++|++|+++||++.|++|+.|+.+++|++++++.++++++||++||+
T Consensus 1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~~ 66 (66)
T cd04922 1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFFL 66 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 479999997 77889999999999999999999999998999999999999999999999999984
|
This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa |
| >PRK09411 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=8e-10 Score=112.76 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=85.4
Q ss_pred hhchhcCCcEEEEcCC--Cc--ccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCcccccc
Q 008621 254 HGDWITDLAIPIVTGF--LG--KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329 (559)
Q Consensus 254 ~~~l~~~~~ipVv~Gf--ig--~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~l 329 (559)
.+.|++.|.|||.+|. ++ .+ .+|...+++ .|.+|+.||.+|+|+.++|+|||||||..++ .|++++|+++
T Consensus 169 I~~Ll~~G~IVI~~gGGGIPV~~~-~~G~e~vID---kD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~i 242 (297)
T PRK09411 169 IELLLKEGHVVICSGGGGVPVTED-GAGSEAVID---KDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHA 242 (297)
T ss_pred HHHHHHCCCEEEecCCCCCCeEEc-CCCeEEecC---HHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCc
Confidence 3345678899888743 22 22 234444455 8999999999999999999999999998653 5788999999
Q ss_pred CHHHHHHHHHcCCCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeEEe
Q 008621 330 TFDEAAELAYFGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR 376 (559)
Q Consensus 330 s~~Ea~eLa~~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~ 376 (559)
+.+|+.++.. ....|.|| |++.+...+.+++|.+..+. ...||+|.
T Consensus 243 t~~e~~~~~~-~~GgM~pKVeAA~~~v~~~g~~a~I~~l~~~~~~l~G~~GT~I~ 296 (297)
T PRK09411 243 TPDELAPFAK-ADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCIS 296 (297)
T ss_pred CHHHHHHhcc-CCCCcHHHHHHHHHHHHhCCCeEEECChhHHHHHHCCCCCeEEe
Confidence 9999977765 45669997 55667777889999653220 12588874
|
|
| >cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-10 Score=90.36 Aligned_cols=65 Identities=29% Similarity=0.614 Sum_probs=61.3
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
+++|+++|. +...+++.+++|++|++.||++.|++|+.++.+++|+|+++|.+++++.||++||+
T Consensus 1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 478999997 77889999999999999999999999998999999999999999999999999984
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=86.55 Aligned_cols=64 Identities=33% Similarity=0.620 Sum_probs=60.3
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
+++|+++|. +...+++.+++|+.|++.+|++.|++|+.++.+++|+++++|.+++++.||++|.
T Consensus 1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh~~~~ 65 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEFG 65 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHhc
Confidence 479999997 7788999999999999999999999999899999999999999999999999984
|
Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=85.79 Aligned_cols=62 Identities=34% Similarity=0.580 Sum_probs=56.6
Q ss_pred cccceeEEEEEee-ccc-cchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHH
Q 008621 472 LLQHRSIISLIGN-VQR-SSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 536 (559)
Q Consensus 472 ~~~~~aiISIVG~-~~~-~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~ 536 (559)
..+++++|+++|. +.. .||+++++|++|+++||||++++ |+.+++++|++++.++|+++||+
T Consensus 2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is---S~~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS---SEISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE---ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE---EeeeEEEEEeHHHHHHHHHHhcC
Confidence 3578999999998 655 89999999999999999999999 79999999999999999999996
|
|
| >cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=83.14 Aligned_cols=75 Identities=92% Similarity=1.237 Sum_probs=64.0
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceee
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVN 471 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~ 471 (559)
+++|+|.+.++.+.+|+++++|+.|+++||++|||++++.+++|+++.++.+....+.. +++.+..+|++++.++
T Consensus 1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~qs~~sISftV~~sd~~~~~~~~~--~l~~~~~~~~~~~~~~ 75 (78)
T cd04933 1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATSEVSISLTLDPSKLWSRELIQQ--ELDHVVEELEKDAVVN 75 (78)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEecCCEEEEEEEhhhhhhhhhHHH--HHHHHHHHHHHcCeEE
Confidence 36899999999999999999999999999999999999999999999988764444443 6778888888876554
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-07 Score=86.54 Aligned_cols=83 Identities=28% Similarity=0.328 Sum_probs=72.4
Q ss_pred chhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCC
Q 008621 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366 (559)
Q Consensus 287 SD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~ 366 (559)
||..+..+|+.++|.++++.|||||||+.+|. ++++++|+..|... |-..++|-+-..+.+.++.++|.|+.
T Consensus 118 SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k~~m~~~Vvng~ 189 (212)
T COG2054 118 SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVKYKMNCRVVNGK 189 (212)
T ss_pred ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHHcCCceEEECCC
Confidence 99999999999999999999999999998874 58899888665543 77899999999999999999999999
Q ss_pred CCC----------CCCeEEec
Q 008621 367 NPN----------APGTLIRR 377 (559)
Q Consensus 367 ~p~----------~~GT~I~~ 377 (559)
+|+ .+||+|.+
T Consensus 190 ~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 190 EPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred CHHHHHHHHhccccceEEEeC
Confidence 885 36777754
|
|
| >cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=76.33 Aligned_cols=64 Identities=41% Similarity=0.776 Sum_probs=59.3
Q ss_pred eEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 477 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 477 aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
++|+++|. +...+++.+++|+.|++.+|++.+++|+.++.+++|++++++.+++++.||++|+.
T Consensus 1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~~~~~~~l~~~~~~ 65 (65)
T cd04892 1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALHEEFFL 65 (65)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHHHHHHHHHHHHHhC
Confidence 57999997 77889999999999999999999999987889999999999999999999999873
|
This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an |
| >cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-08 Score=76.62 Aligned_cols=61 Identities=39% Similarity=0.707 Sum_probs=56.6
Q ss_pred eEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008621 477 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 477 aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
++|+++|. +...+++.+++|++|.+++|++.++++ ++.+++|+|++++.+++++.||++|+
T Consensus 1 ~~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~~~~~~~~~l~~~l~ 62 (63)
T cd04923 1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST--SEIKISCLVDEDDAEKAVRALHEAFE 62 (63)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc--cCCeEEEEEeHHHHHHHHHHHHHHhc
Confidence 47899996 777899999999999999999999987 68999999999999999999999996
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-08 Score=81.16 Aligned_cols=66 Identities=32% Similarity=0.526 Sum_probs=61.6
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 541 (559)
+++|+++|. +...+++.+++|++|++.+|++.|++|++++.+++|+++.++.+++++.||++|+..
T Consensus 1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~~~~~~~l~~~~~~~ 67 (80)
T cd04921 1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADKALEALEEEFALE 67 (80)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHHhh
Confidence 478999996 778899999999999999999999999999999999999999999999999999654
|
This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat |
| >cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Probab=98.71 E-value=5e-08 Score=76.20 Aligned_cols=61 Identities=38% Similarity=0.693 Sum_probs=56.5
Q ss_pred eEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008621 477 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 477 aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
++|+++|. +...+++.+++|+.|++.+|++.++++ ++.+++|+|+++|.+++++.||++|+
T Consensus 1 ~~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~d~~~~~~~l~~~~~ 62 (63)
T cd04936 1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST--SEIKISCLIDEDDAEKAVRALHEAFE 62 (63)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc--cCceEEEEEeHHHHHHHHHHHHHHhc
Confidence 47899997 777899999999999999999999986 67999999999999999999999996
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu |
| >cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.9e-08 Score=79.06 Aligned_cols=72 Identities=40% Similarity=0.551 Sum_probs=59.0
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHH-HHHHHHhhhceeec
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELD-HVVEELEKIAIVNL 472 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~-~~~~~L~~~~~v~~ 472 (559)
+++|+|.+.++.+.+|+++++|+.|+++||+||||++++.+++|+++.++....+ .+. .+..+|++++.+.+
T Consensus 1 ~~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~s~~~iSftv~~~d~~~~~------~~~~~l~~~l~~~~~v~~ 73 (75)
T cd04932 1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTSEISVALTLDNTGSTSDQ------LLTQALLKELSQICDVKV 73 (75)
T ss_pred CEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEeecCCEEEEEEeccccchhH------HHHHHHHHHHHhccEEEe
Confidence 4688998888999999999999999999999999999999999999987643211 343 57778888776654
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=77.94 Aligned_cols=71 Identities=31% Similarity=0.550 Sum_probs=59.6
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeec
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNL 472 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~ 472 (559)
+++|+|.+.+|.+.+|+++++|+.|+++||++||+++++.+++|+++.+++.. +.++.+.++|++++.+++
T Consensus 1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~s~~~isftv~~~~~~~-------~~l~~l~~el~~~~~v~~ 71 (73)
T cd04934 1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLISTSEVHVSMALHMENAED-------TNLDAAVKDLQKLGTVDI 71 (73)
T ss_pred CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEeCCCEEEEEEehhhcCh-------HHHHHHHHHHHHheEEEe
Confidence 46889999999999999999999999999999999999999999999875421 145567778887666654
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro |
| >cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-07 Score=75.83 Aligned_cols=72 Identities=35% Similarity=0.625 Sum_probs=59.2
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchh-hHHHHHHHHHHHHHHHHHhhhceeec
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW-SRELIQQASELDHVVEELEKIAIVNL 472 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~-~~~~~~~~~~l~~~~~~L~~~~~v~~ 472 (559)
+++|++.+.++.+.+|+++++|+.|+++||++||+++++.+++|++++++.+ ..+ .++.+.++|++++.+++
T Consensus 1 ~~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~s~~~isftv~~~~~~~~~~------~~~~l~~el~~~~~v~~ 73 (75)
T cd04935 1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTSETNVTVSLDPDPNGLDPD------VLDALLDDLNQICRVKI 73 (75)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEeCCCEEEEEEeCcccccchH------HHHHHHHHHHhceEEEE
Confidence 4689999999999999999999999999999999999999999999987621 111 35567778887665553
|
This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-05 Score=79.98 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=86.5
Q ss_pred HHhhchhcCCcEEEEcCCCcccCCCCceeeecCCc----------chhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCC
Q 008621 252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG----------SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321 (559)
Q Consensus 252 ~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgG----------SD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~ 321 (559)
...+.|+++|.++|..|-= |-+ +...++ =|+++++||..++||.++|+||||+||-.--+ |
T Consensus 175 ~~Ik~L~~~g~vVI~~GGG------GIP-Vv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p 245 (312)
T COG0549 175 EAIKALLESGHVVIAAGGG------GIP-VVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGK--P 245 (312)
T ss_pred HHHHHHHhCCCEEEEeCCC------Ccc-eEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCC--c
Confidence 3445567888888887621 211 121111 49999999999999999999999999986533 6
Q ss_pred CCccccccCHHHHHHHHHc---CCCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeEEe
Q 008621 322 HAKPVPYLTFDEAAELAYF---GAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR 376 (559)
Q Consensus 322 ~a~~i~~ls~~Ea~eLa~~---Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~ 376 (559)
+-+.|.+++.+|+.++... ...-|-|| |+..+...|-+..|.+--+- ...||.|.
T Consensus 246 ~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~GT~I~ 311 (312)
T COG0549 246 NQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKAGTVIV 311 (312)
T ss_pred cchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCCCcEec
Confidence 7889999999999988764 45789997 77888888888998763331 24688875
|
|
| >cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.6e-07 Score=68.17 Aligned_cols=59 Identities=39% Similarity=0.646 Sum_probs=54.4
Q ss_pred eEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 477 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 477 aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
++|+++|. +...+++.+++|+.|++++|++.+++++.++.+++|+++.++.+++++.||
T Consensus 1 ~~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~~~~~~~~~~~lh 60 (60)
T cd04868 1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH 60 (60)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEeHHHHHHHHHHhC
Confidence 47899997 667899999999999999999999999887899999999999999999987
|
This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am |
| >cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=71.95 Aligned_cols=72 Identities=56% Similarity=0.789 Sum_probs=58.4
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceee
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVN 471 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~ 471 (559)
+++|++.+.++.+.+|+.+++|+.|+++||+++++++|+.+++|+++.++.... + ..++.+.++|+++..++
T Consensus 1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s~~~is~~v~~~~~~~~---~--~~~~~~~~~l~~~~~~~ 72 (75)
T cd04912 1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSEVSVSLTLDPTKNLSD---Q--LLLDALVKDLSQIGDVE 72 (75)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcCCcEEEEEEEchhhccc---h--HHHHHHHHHHHhCCEEE
Confidence 468999999999999999999999999999999999999999999998764210 0 14556777887755554
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD |
| >TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=93.58 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCce-eEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-cccc
Q 008621 411 FLAKVFSTFEDLGISVDVVATSEVS-LSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRS 488 (559)
Q Consensus 411 ~larIf~~L~~~gI~Vd~IstSe~s-Is~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~ 488 (559)
+..+-+....+++|++....+.... -+...+.. ..-..+..++..+++++|+++|. |.+.
T Consensus 212 ~~~~a~~~a~~~~i~i~i~~~~~~~~gT~I~~~~------------------~~~~~v~~I~~~~~va~vsv~g~~~~~~ 273 (401)
T TIGR00656 212 LHPRTVEPAMRSGVPIEVRSSFDPEEGTLITNSM------------------ENPPLVKGIALRKNVTRVTVHGLGMLGK 273 (401)
T ss_pred cCHHHHHHHHHCCCeEEEEECCCCCCCeEEEeCc------------------ccCCceEEEEEECCEEEEEEecCCCCCC
Confidence 3466778889999999877654322 22222110 00012456888899999999996 8888
Q ss_pred chHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008621 489 SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 489 ~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 541 (559)
+|+++++|++|++++|++.+++|++|+.+++|+|+++|.+++++.||+.|...
T Consensus 274 ~g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 274 RGFLARIFGALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQSGAA 326 (401)
T ss_pred ccHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998443
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. |
| >cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-06 Score=67.95 Aligned_cols=49 Identities=47% Similarity=0.692 Sum_probs=45.5
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 397 lItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
.|++.+.+|.+.+|+.+++|+.|++++|+++++++++.+++|+++.++.
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t~~~~is~~v~~~~~ 50 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPTSENSVTLYLDDSLL 50 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEecCCCEEEEEEehhhh
Confidence 5788999999999999999999999999999999999999999987653
|
This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel |
| >PRK06291 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-06 Score=95.93 Aligned_cols=113 Identities=29% Similarity=0.410 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCc--eeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccc
Q 008621 411 FLAKVFSTFEDLGISVDVVATSEV--SLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQR 487 (559)
Q Consensus 411 ~larIf~~L~~~gI~Vd~IstSe~--sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~ 487 (559)
+-.+-+....++||++....+.+. .-++..+.... . . ..+..|+..+++++|+++|. |..
T Consensus 271 ~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~------------~----~-~~V~~It~~~~valIsI~g~~m~~ 333 (465)
T PRK06291 271 LHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSES------------S----K-RVVKAVTLIKNVALINISGAGMVG 333 (465)
T ss_pred cCHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccc------------c----C-cccceEEeeCCEEEEEEeCCCCCC
Confidence 345667778899999887765331 22333221110 0 0 12467888999999999997 778
Q ss_pred cchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 488 SSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 488 ~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
.+++++++|++|+++||+|.||+|++|+.+++|+|++++.+++++.||++|..
T Consensus 334 ~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~av~~L~~~~~~ 386 (465)
T PRK06291 334 VPGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEKALKALRREFGE 386 (465)
T ss_pred CccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999875
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.4e-06 Score=98.59 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCc--eeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccc
Q 008621 411 FLAKVFSTFEDLGISVDVVATSEV--SLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQR 487 (559)
Q Consensus 411 ~larIf~~L~~~gI~Vd~IstSe~--sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~ 487 (559)
+-.+-+....++||++....+.+. .-++.....+. +-..+..++..+++++|+++|. |..
T Consensus 265 lhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~~-----------------~~~~Vk~It~~~dvalIsV~G~gm~~ 327 (819)
T PRK09436 265 LHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESDE-----------------DSLPVKGISNLNNMAMFNVSGPGMKG 327 (819)
T ss_pred chHHHHHHHHHCCceEEEccCCCCCCCceEEEecCcc-----------------cccccceEEEeCCEEEEEEEcCCCCC
Confidence 345667788899999888765432 12222221100 0012456888899999999997 888
Q ss_pred cchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008621 488 SSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 488 ~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
.+++++|+|++|+++||++.||+|++|+.+|+|+|++++.+++++.||++|.
T Consensus 328 ~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~ 379 (819)
T PRK09436 328 MVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFA 379 (819)
T ss_pred CcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999985
|
|
| >cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.2e-06 Score=65.03 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=47.3
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+++|++.|.+|...+|+++|+|+.|++.||++.++++|+.+++|++++++.
T Consensus 1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~Se~~is~~v~~~~~ 51 (64)
T cd04937 1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADSHTTISCLVSEDDV 51 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcCccEEEEEEcHHHH
Confidence 468999999999999999999999999999999999999999999987653
|
This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th |
| >cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.5e-06 Score=66.53 Aligned_cols=63 Identities=22% Similarity=0.416 Sum_probs=54.0
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH---HHHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA---EQCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~---~kAv~~LH~~f~~ 540 (559)
+++|+++|. +...+++++++|++|++++|++.++++ |+.++||+|++++. +..++.|-++|-.
T Consensus 1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~--s~~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST--SEVSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc--CCcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 478999997 778899999999999999999999987 78999999999986 4566666666654
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD |
| >cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.9e-05 Score=60.53 Aligned_cols=57 Identities=28% Similarity=0.461 Sum_probs=50.0
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCc---eEEEEEEecccHHHHHHHH
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASK---VNISLIVNDDEAEQCVRAL 534 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe---~sIs~vV~~~d~~kAv~~L 534 (559)
++|+++|. .+.+++++++|+.|.+++|++.+++|+.+. .+++|.+++++.+++++.|
T Consensus 1 ~~v~v~~~-~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~~~~~~~~~~l 60 (61)
T cd04891 1 AQVTIKGV-PDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLEKALAIL 60 (61)
T ss_pred CEEEEecC-CCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeHHHHHHHHHHh
Confidence 36788884 566899999999999999999999998766 8899999999999988765
|
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.7e-05 Score=64.48 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=53.9
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHH------HHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE------QCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~------kAv~~LH~~f~~ 540 (559)
+++|+|.+. +...+|+++++|+.|+++||++.||+| ++.++||.+++++.. .+++.|-.+|-.
T Consensus 1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 368899997 778899999999999999999999998 679999999999984 577777766644
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.5e-05 Score=62.38 Aligned_cols=53 Identities=25% Similarity=0.429 Sum_probs=47.8
Q ss_pred ecCeEEEEEEecCccc-hhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 392 KRNVTMLDIVSTRMLG-QYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 392 ~~~ialItV~~~~m~~-~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
.++++.|+|.+.+|.. .+|+++++|+.|+++||++.+++ |+.++++.|+.+++
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-S~~~~~ilV~~~~~ 56 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-SEISISILVKEEDL 56 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-ESSEEEEEEEGGGH
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-EeeeEEEEEeHHHH
Confidence 5789999999998866 99999999999999999999999 99999999998764
|
|
| >cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=2e-05 Score=63.20 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=53.4
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCC---ceEEEEEEecccHHHHHHHHHHHh
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGAS---KVNISLIVNDDEAEQCVRALHETF 538 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaS---e~sIs~vV~~~d~~kAv~~LH~~f 538 (559)
++|+++|. ...+++++++|+.|.++||++.+++|+.+ +.+++|++++++.+++++.||+..
T Consensus 2 ~~v~v~~~-~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~~d~~~~~~~l~~~~ 65 (75)
T cd04913 2 AKITLRGV-PDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLEKLK 65 (75)
T ss_pred eEEEECCC-CCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecHHHHHHHHHHHHHHH
Confidence 67888884 55689999999999999999999999766 357999999999999999999954
|
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee |
| >cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3 | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.8e-05 Score=61.49 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=45.4
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe--cCceeEEEeCCCc
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSK 444 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist--Se~sIs~~v~~~~ 444 (559)
+++|++.|.++.+.+++.+++|+.|+++||+++|+++ ++.+++|++++++
T Consensus 1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~ 52 (66)
T cd04919 1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKD 52 (66)
T ss_pred CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHH
Confidence 4689999999999999999999999999999999975 6789999998765
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.9e-05 Score=60.49 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=45.3
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe--cCceeEEEeCCCc
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSK 444 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist--Se~sIs~~v~~~~ 444 (559)
+++|++.|.++.+.+++.+++|+.|+++||+++|+++ ++.+++|++++++
T Consensus 1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~ 52 (66)
T cd04922 1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDD 52 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHH
Confidence 4689999999999999999999999999999999975 6789999998765
|
This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa |
| >cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.2e-05 Score=59.96 Aligned_cols=59 Identities=20% Similarity=0.412 Sum_probs=52.3
Q ss_pred EEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHh
Q 008621 478 IISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538 (559)
Q Consensus 478 iISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f 538 (559)
.|++.|. |...+++.+++|+.|++++|++.+|++ ++.+++|+++.++.++.++.|-+++
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEehhhhhHHHHHHHHhh
Confidence 5788886 778899999999999999999999988 6799999999999888888877654
|
This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel |
| >cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.4e-05 Score=62.42 Aligned_cols=62 Identities=24% Similarity=0.362 Sum_probs=53.6
Q ss_pred eEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHH-HHHHHHHHhcc
Q 008621 477 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQ-CVRALHETFFE 540 (559)
Q Consensus 477 aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~k-Av~~LH~~f~~ 540 (559)
++|.+.+. |...+|+++++|+.|+++|||+.||+| ++.+++|.++.++.+. .++.|.++|-.
T Consensus 2 ~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~--s~~~isftv~~~~~~~~~l~~l~~el~~ 65 (73)
T cd04934 2 LVINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST--SEVHVSMALHMENAEDTNLDAAVKDLQK 65 (73)
T ss_pred EEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEehhhcChHHHHHHHHHHHH
Confidence 67889997 788899999999999999999999998 6699999999987654 77777777654
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro |
| >COG0527 LysC Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=9e-05 Score=80.78 Aligned_cols=114 Identities=23% Similarity=0.303 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCce--eEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccc
Q 008621 411 FLAKVFSTFEDLGISVDVVATSEVS--LSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQR 487 (559)
Q Consensus 411 ~larIf~~L~~~gI~Vd~IstSe~s--Is~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~ 487 (559)
+..+-++...+++|++..-++.... =++........ . ..+..|+..+++++|++.|. |..
T Consensus 257 LHprav~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~~----------------~-~~v~gIa~~~~~~~i~v~~~~~~~ 319 (447)
T COG0527 257 LHPRAVEPAMRSGIPLRIKNTFNPDAPGTLITAETESD----------------E-PVVKGIALDDNVALITVSGPGMNG 319 (447)
T ss_pred cCHHHHHHHHhcCCcEEEEecCCCCCCceEEecCCcCC----------------C-CceEEEEeCCCeEEEEEEccCccc
Confidence 4577788899999999888765543 45555432100 0 12346888899999999997 777
Q ss_pred cchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008621 488 SSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 488 ~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 541 (559)
.+|+++++|..|+++||++.+|.|+.++.+++|.+++++.+++.+.||+++...
T Consensus 320 ~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~ 373 (447)
T COG0527 320 MVGFAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLEL 373 (447)
T ss_pred cccHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhh
Confidence 889999999999999999999999999999999999999999999999999854
|
|
| >cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.3e-05 Score=61.49 Aligned_cols=61 Identities=20% Similarity=0.422 Sum_probs=49.7
Q ss_pred eEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHH--HHHH-HHHHHhc
Q 008621 477 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE--QCVR-ALHETFF 539 (559)
Q Consensus 477 aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~--kAv~-~LH~~f~ 539 (559)
++|++.|. +...+|+++++|+.|+++||+|.||+| ++.++||.++.++.. ++++ +|-.+|-
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~--s~~~iSftv~~~d~~~~~~~~~~l~~~l~ 66 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT--SEISVALTLDNTGSTSDQLLTQALLKELS 66 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee--cCCEEEEEEeccccchhHHHHHHHHHHHH
Confidence 67889776 677899999999999999999999998 669999999999843 3554 5555443
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK06635 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.6e-05 Score=82.33 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEec-CceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEeeccccc
Q 008621 411 FLAKVFSTFEDLGISVDVVATS-EVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSS 489 (559)
Q Consensus 411 ~larIf~~L~~~gI~Vd~IstS-e~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~~~~~~ 489 (559)
+..+.++.+.+.++++....+. +...++....... ..+ -..+..+...+++++|+++| +.+.+
T Consensus 211 ~~~~a~~~~~~~~i~~~i~~~~~~~~gT~i~~~~~~----------~~~-----~~~i~~I~~~~~v~~Isv~g-~~~~~ 274 (404)
T PRK06635 211 LHPRSVEYAKKYNVPLRVRSSFSDNPGTLITGEEEE----------IME-----QPVVTGIAFDKDEAKVTVVG-VPDKP 274 (404)
T ss_pred cCHHHHHHHHHcCceEEEEcCCCCCCCCEEeeCCcc----------ccc-----cCceEEEEecCCeEEEEECC-CCCCc
Confidence 4466788899999998877542 3344444432210 000 00134577889999999999 88889
Q ss_pred hHHHHHHHHHHhCCCcEEEEEecCCc---eEEEEEEecccHHHHHHHHHHH
Q 008621 490 LILEKAFRVLRRSGVNVQMISQGASK---VNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 490 gv~~ri~~~L~~~~InI~~IsqgaSe---~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
|+++++|++|++.|||+.+++|+.++ .+++|++++++.++++++||+.
T Consensus 275 g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~ 325 (404)
T PRK06635 275 GIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEV 325 (404)
T ss_pred cHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHH
Confidence 99999999999999999999998766 8999999999999999999993
|
|
| >cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.2e-05 Score=61.84 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=52.5
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhh
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEK 466 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~ 466 (559)
+.|++....|....||..|++++|+++||+++++.++.+++|++++++++... .++.++.+++.
T Consensus 2 ~~I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~PSGID~~Siii~~~~~~~~-------~~~~i~~~i~~ 65 (76)
T cd04911 2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHMPSGIDDISIIIRDNQLTDE-------KEQKILAEIKE 65 (76)
T ss_pred ceEehhHhhccchhcHHHHHHHHHHHcCCCEeeecCCCccEEEEEEccccchh-------hHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999998866421 23445556654
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=57.29 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=45.2
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe--cCceeEEEeCCCch
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKL 445 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist--Se~sIs~~v~~~~~ 445 (559)
+++|++.|.++...+++.+++|+.|+++||+++|+++ ++.+++|+++.++.
T Consensus 1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~ 53 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDG 53 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHH
Confidence 4689999999999999999999999999999999974 56889999987653
|
Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=56.45 Aligned_cols=49 Identities=29% Similarity=0.521 Sum_probs=44.5
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 397 lItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+|++.+.++.+.+++.+++|+.|++++|+++++++++.+++|+++.++.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s~~~is~~v~~~d~ 50 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTSEIKISCLIDEDDA 50 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEccCceEEEEEeHHHH
Confidence 5788888888899999999999999999999999889999999987653
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu |
| >cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=56.18 Aligned_cols=49 Identities=29% Similarity=0.514 Sum_probs=44.5
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 397 lItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+|++.+.++.+.++++.++|+.|++++|+++++++++.+++|+++.++.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s~~~is~~v~~~~~ 50 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTSEIKISCLVDEDDA 50 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEccCCeEEEEEeHHHH
Confidence 6788888888889999999999999999999999999999999987653
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00025 Score=58.28 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=50.7
Q ss_pred eEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH--H-HHHHHHHHHhc
Q 008621 477 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA--E-QCVRALHETFF 539 (559)
Q Consensus 477 aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~--~-kAv~~LH~~f~ 539 (559)
++|++.+. +...+++++++|++|++++|++.||+| ++.+++|.++.++. . +.++.|-+++-
T Consensus 2 ~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~~~~~~~~~~~~~~l~~el~ 66 (75)
T cd04935 2 RLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLDPDPNGLDPDVLDALLDDLN 66 (75)
T ss_pred EEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEeCcccccchHHHHHHHHHHH
Confidence 67889997 777899999999999999999999998 66999999999982 3 36666655554
|
This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00019 Score=57.08 Aligned_cols=49 Identities=18% Similarity=0.421 Sum_probs=43.4
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCch
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~ 445 (559)
++|++.|. +...+|+++++|+.|++.||++.|++ +|+.+++|.+++++.
T Consensus 2 a~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~ 52 (65)
T cd04918 2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEA 52 (65)
T ss_pred cEEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHH
Confidence 47889998 77789999999999999999999998 778899999987653
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00024 Score=55.89 Aligned_cols=51 Identities=18% Similarity=0.371 Sum_probs=45.3
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe--cCceeEEEeCCCch
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKL 445 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist--Se~sIs~~v~~~~~ 445 (559)
+++|++.|.++...+++.+++|+.|++.||+++|+++ ++.+++|+++.++.
T Consensus 1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~ 53 (66)
T cd04916 1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDA 53 (66)
T ss_pred CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHH
Confidence 4688999999999999999999999999999999985 56889999987653
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR00657 asp_kinases aspartate kinase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=79.18 Aligned_cols=109 Identities=22% Similarity=0.336 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCc--eeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccc
Q 008621 411 FLAKVFSTFEDLGISVDVVATSEV--SLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQR 487 (559)
Q Consensus 411 ~larIf~~L~~~gI~Vd~IstSe~--sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~ 487 (559)
+..+.+....+++|++....+... .-+...+... .. +-..+..++..+++++|++.|. +..
T Consensus 251 ~~~~a~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~-----------~~-----~~~~i~~It~~~~v~~Isv~g~~~~~ 314 (441)
T TIGR00657 251 LHPRTLEPAMRAKIPIVVKSTFNPEAPGTLIVASTK-----------EM-----EEPIVKGLSLDRNQARVTVSGLGMKG 314 (441)
T ss_pred cCHHHHHHHHHcCCeEEEecCCCCCCCceEEEeCCC-----------cc-----ccCccceEEEeCCEEEEEEECCCCCC
Confidence 345667788899999887764321 1222222110 00 0012456888899999999997 655
Q ss_pred cchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHH
Q 008621 488 SSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 536 (559)
Q Consensus 488 ~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~ 536 (559)
+|+++++|++|++++|+|.+|+|++|+.+++|+|++++.+++++.|..
T Consensus 315 -~g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~ 362 (441)
T TIGR00657 315 -PGFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKS 362 (441)
T ss_pred -ccHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888744
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. |
| >cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00032 Score=56.10 Aligned_cols=50 Identities=16% Similarity=0.348 Sum_probs=44.2
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe--cCceeEEEeCCCch
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKL 445 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist--Se~sIs~~v~~~~~ 445 (559)
+++|++.|.+|. .+|+.+++|+.|.+.||++.|+++ |+.+++|.+++++.
T Consensus 2 ~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~ 53 (66)
T cd04915 2 VAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDY 53 (66)
T ss_pred EEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHH
Confidence 678999999994 899999999999999999999987 45899999987653
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas |
| >cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0003 Score=53.21 Aligned_cols=48 Identities=42% Similarity=0.657 Sum_probs=42.6
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC--ceeEEEeCCCc
Q 008621 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE--VSLSLTLDPSK 444 (559)
Q Consensus 397 lItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe--~sIs~~v~~~~ 444 (559)
+|++.+..|.+.+++++++|+.|++++|++++++++. .+++|+++.++
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~~~~ 51 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESD 51 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEeHHH
Confidence 6788888888889999999999999999999999876 78999998653
|
This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am |
| >cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0005 Score=54.40 Aligned_cols=50 Identities=12% Similarity=0.229 Sum_probs=45.3
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
++|++.|.+|...+|+++++|+.|++.+|++.+..+|+.+++|.++.++.
T Consensus 1 a~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s~~~is~vv~~~d~ 50 (63)
T cd04920 1 AAVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAANDLNLTFVVDEDQA 50 (63)
T ss_pred CEEEEECCCcccCccHHHHHHHHHhcCCceEEEEeCCCCeEEEEEeHHHH
Confidence 47899999999999999999999999999988888999999999987653
|
This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00075 Score=52.07 Aligned_cols=49 Identities=27% Similarity=0.570 Sum_probs=43.1
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec--CceeEEEeCCCc
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSK 444 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS--e~sIs~~v~~~~ 444 (559)
++|++.|.++.+.+++.+++|+.|++++|++++++++ +.+++|+++.++
T Consensus 1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~ 51 (65)
T cd04892 1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDD 51 (65)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHH
Confidence 3688888889899999999999999999999999874 488999998764
|
This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an |
| >cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=53.98 Aligned_cols=51 Identities=35% Similarity=0.565 Sum_probs=44.9
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe--cCceeEEEeCCCch
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKL 445 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist--Se~sIs~~v~~~~~ 445 (559)
+++|++.|.++.+.+++..++|+.|++++|+++|+++ ++.+++|+++.++.
T Consensus 1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~ 53 (80)
T cd04921 1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDA 53 (80)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHH
Confidence 4688999989999999999999999999999999985 45789999987654
|
This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat |
| >PLN02551 aspartokinase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=72.15 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=72.8
Q ss_pred CcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCcc---------------ceeeEEeeecCeEEEEEEecCccc
Q 008621 343 QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK---------------AVLTSIVLKRNVTMLDIVSTRMLG 407 (559)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~---------------~~It~Is~~~~ialItV~~~~m~~ 407 (559)
..+..+-+..+.++||+|....+.. .. =+......+... ..+..|...+++++|++.|. |..
T Consensus 380 ~g~~arvf~~l~~~~I~Vd~IssSe-~s-Is~~v~~~~~~~~~~i~~~l~~l~~el~~~~~V~v~~~vAiISvVG~-~~~ 456 (521)
T PLN02551 380 YGFLAKVFSTFEDLGISVDVVATSE-VS-ISLTLDPSKLWSRELIQQELDHLVEELEKIAVVNLLQGRSIISLIGN-VQR 456 (521)
T ss_pred ccHHHHHHHHHHHcCCcEEEEeccC-CE-EEEEEehhHhhhhhhHHHHHHHHHHHhhcCCeEEEeCCEEEEEEEcc-CCC
Confidence 3455667888899999987765432 11 111111111000 01346888899999999998 788
Q ss_pred hhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCch
Q 008621 408 QYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (559)
Q Consensus 408 ~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~ 445 (559)
.+|+++++|+.|+++||+|.||+ +|+.+|+|+|++++.
T Consensus 457 ~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~ 496 (521)
T PLN02551 457 SSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEA 496 (521)
T ss_pred CccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHH
Confidence 99999999999999999999998 678999999988754
|
|
| >PRK09034 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=72.95 Aligned_cols=98 Identities=14% Similarity=0.250 Sum_probs=72.3
Q ss_pred hHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCc-------------cceeeEEeeecCeEEEEEEecCccchhhHH
Q 008621 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS-------------KAVLTSIVLKRNVTMLDIVSTRMLGQYGFL 412 (559)
Q Consensus 346 hp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~-------------~~~It~Is~~~~ialItV~~~~m~~~~g~l 412 (559)
-.+-+..+.++||++...++.. .. =+...+..+.. ...+.+|+..+++++|++.|.+|.+.+|++
T Consensus 325 ~a~if~~la~~~I~Vd~i~ss~-~s-is~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~gv~ 402 (454)
T PRK09034 325 GRKVLQILEDHGISYEHMPSGI-DD-LSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVA 402 (454)
T ss_pred HHHHHHHHHHcCCeEEEEcCCC-cE-EEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCccHH
Confidence 3456778889999877764211 11 11222211110 012468999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCch
Q 008621 413 AKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (559)
Q Consensus 413 arIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~ 445 (559)
+++|+.|+++||+|+|++ +|+.+++|++++++.
T Consensus 403 arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~ 437 (454)
T PRK09034 403 AKITKALAEANINIQMINQGSSEISIMFGVKNEDA 437 (454)
T ss_pred HHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHH
Confidence 999999999999999998 578999999987653
|
|
| >PRK09181 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0028 Score=69.92 Aligned_cols=111 Identities=12% Similarity=0.103 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCc--eeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccc
Q 008621 411 FLAKVFSTFEDLGISVDVVATSEV--SLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQR 487 (559)
Q Consensus 411 ~larIf~~L~~~gI~Vd~IstSe~--sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~ 487 (559)
+..+-++...+++|++...++... .=++....... .-..+..|+..+++++|++.|. |..
T Consensus 279 LHp~ti~pa~~~~Ipi~V~nt~~p~~~GT~I~~~~~~-----------------~~~~ik~It~~~~~~~i~i~~~~~~~ 341 (475)
T PRK09181 279 IHPKAAKGLRQAGIPLRIKNTFEPEHPGTLITKDYVS-----------------EQPRVEIIAGSDKVFALEVFDQDMVG 341 (475)
T ss_pred cCHHHHHHHHHcCCeEEEecCCCCCCCCeEEecCccc-----------------ccccceeEeccCCEEEEEEcCCCCCC
Confidence 456778889999999987765432 22333221100 0011346777889999999996 778
Q ss_pred cchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecc-c-HHHHHHHHHHHhcc
Q 008621 488 SSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDD-E-AEQCVRALHETFFE 540 (559)
Q Consensus 488 ~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~-d-~~kAv~~LH~~f~~ 540 (559)
.+|+++++|+.|++.+|+|.++++ |+.++||+++.+ + .+++++.|+++|-.
T Consensus 342 ~~g~~~~if~~l~~~~i~v~~i~s--s~~sis~~v~~~~~~~~~~~~~L~~~~~~ 394 (475)
T PRK09181 342 EDGYDLEILEILTRHKVSYISKAT--NANTITHYLWGSLKTLKRVIAELEKRYPN 394 (475)
T ss_pred cchHHHHHHHHHHHcCCeEEEEEe--cCcEEEEEEcCChHHHHHHHHHHHHhcCC
Confidence 899999999999999999999987 688999999988 3 67889999988853
|
|
| >cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0026 Score=51.68 Aligned_cols=61 Identities=18% Similarity=0.345 Sum_probs=51.2
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhh
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEK 466 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~ 466 (559)
..|.+.+.+|.|.+|+..+||+.|+++++++.+..++.++|+.++..+.- .++++..+|++
T Consensus 2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k----------~~~r~~~~Le~ 62 (71)
T cd04910 2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNANTITHYLAGSLK----------TIKRLTEDLEN 62 (71)
T ss_pred eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHH----------HHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999976531 34556666654
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase |
| >cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0028 Score=49.96 Aligned_cols=48 Identities=17% Similarity=0.427 Sum_probs=40.8
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCc
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSK 444 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~ 444 (559)
+++|++.|.+|.+.++.++++|+.|++ +++.+++ +++.+++|.+++++
T Consensus 1 ~alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~~s~~~is~~V~~~~ 50 (64)
T cd04917 1 LALVALIGNDISETAGVEKRIFDALED--INVRMICYGASNHNLCFLVKEED 50 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEecCccEEEEEEeHHH
Confidence 468999999999999999999999976 6666665 67789999998765
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=51.63 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=39.2
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+.++|.+. ...+|+++++|+.|+++||++|||+.+..+++|+++.++.
T Consensus 2 ~~vtv~~~--~~~~~~~a~if~~La~~~InvDmI~~~~~~isFtv~~~d~ 49 (67)
T cd04914 2 TQIKVKAK--DNENDLQQRVFKALANAGISVDLINVSPEEVIFTVDGEVA 49 (67)
T ss_pred eEEEEecC--CCCccHHHHHHHHHHHcCCcEEEEEecCCCEEEEEchhhH
Confidence 46677753 4568999999999999999999997655579999998764
|
This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and |
| >cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.004 Score=49.90 Aligned_cols=56 Identities=20% Similarity=0.402 Sum_probs=45.2
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
+.|++.|.- ..+++++++|+.|++++|++.||++. ++ +++|.++.++.+++.+.|-
T Consensus 2 ~~vtv~~~~-~~~~~~a~if~~La~~~InvDmI~~~-~~-~isFtv~~~d~~~~~~il~ 57 (67)
T cd04914 2 TQIKVKAKD-NENDLQQRVFKALANAGISVDLINVS-PE-EVIFTVDGEVAEKAVDILE 57 (67)
T ss_pred eEEEEecCC-CCccHHHHHHHHHHHcCCcEEEEEec-CC-CEEEEEchhhHHHHHHHHH
Confidence 567777742 34789999999999999999999876 33 7999999999998865543
|
This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and |
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0068 Score=71.03 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCce--eEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccc
Q 008621 411 FLAKVFSTFEDLGISVDVVATSEVS--LSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQR 487 (559)
Q Consensus 411 ~larIf~~L~~~gI~Vd~IstSe~s--Is~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~ 487 (559)
+..+-++...+++|++..-++.... =++...... . -.....|+..+++++|++.|. +..
T Consensus 268 lHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~-----------~-------~~~v~~It~~~~v~~i~i~~~~~~g 329 (810)
T PRK09466 268 LHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA-----------S-------GTGARIVTSLDDVCLIELQVPASHD 329 (810)
T ss_pred cCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc-----------c-------ccceeeeeccCCEEEEEEecCCcCC
Confidence 4567788889999998877654321 223322110 0 001234677789999999986 667
Q ss_pred cchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHh
Q 008621 488 SSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538 (559)
Q Consensus 488 ~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f 538 (559)
.+++++++|+.|++++|++.+|+|++++.+++|.++.++.+++.+.|++..
T Consensus 330 ~~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~~~~~~l~~~~ 380 (810)
T PRK09466 330 FKLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVADSALKLLDDAA 380 (810)
T ss_pred cchHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHHHHHHHHHhhc
Confidence 789999999999999999999999999999999999999999999998864
|
|
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.051 Score=48.06 Aligned_cols=119 Identities=19% Similarity=0.316 Sum_probs=84.1
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE---ecCce-eEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeec
Q 008621 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA---TSEVS-LSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNL 472 (559)
Q Consensus 397 lItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is---tSe~s-Is~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~ 472 (559)
.|++. ..+.||=++.+.+.|.++|||+...+ +++.. +.+.+++.+ +..+++++- ..+
T Consensus 5 QISvF---lENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d-----------~A~~~Lee~----gF~- 65 (142)
T COG4747 5 QISVF---LENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD-----------EAHSVLEEA----GFT- 65 (142)
T ss_pred EEEEE---ecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChH-----------HHHHHHHHC----CcE-
Confidence 34554 34678889999999999999999886 55554 567787654 222333322 122
Q ss_pred ccceeEEEEEe-eccccchHHHHHHHHHHhCCCcEEEEEe-cCCceEEEEEEecccHHHHHHHHHHH
Q 008621 473 LQHRSIISLIG-NVQRSSLILEKAFRVLRRSGVNVQMISQ-GASKVNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 473 ~~~~aiISIVG-~~~~~~gv~~ri~~~L~~~~InI~~Isq-gaSe~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
+..=.+++ +|...||-+.++..+|..++||+.-|-. -.....-.++++-+|.+++.++|.+.
T Consensus 66 ---Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~ 129 (142)
T COG4747 66 ---VRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDA 129 (142)
T ss_pred ---EEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHc
Confidence 12335666 4888999999999999999999864211 11346677889999999999999886
|
|
| >PRK09084 aspartate kinase III; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0033 Score=68.94 Aligned_cols=107 Identities=15% Similarity=0.215 Sum_probs=75.6
Q ss_pred HHHHHHHHHhCCCcEEEEEecCc--eeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-cccc
Q 008621 412 LAKVFSTFEDLGISVDVVATSEV--SLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRS 488 (559)
Q Consensus 412 larIf~~L~~~gI~Vd~IstSe~--sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~ 488 (559)
..+-+....+++|++....+.+. .-++..+... .-..+..|+..+++++|++-|. |...
T Consensus 258 h~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~------------------~~~~v~~it~~~~i~lItv~~~~~~~~ 319 (448)
T PRK09084 258 HPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE------------------NPPLFRAIALRRNQTLLTLHSLNMLHA 319 (448)
T ss_pred CHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC------------------CCCeeEEEEeeCCEEEEEEecCCCCcc
Confidence 34556677888998887764321 1233322110 0012456888899999999996 7788
Q ss_pred chHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH-HHHHHHHHHHh
Q 008621 489 SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA-EQCVRALHETF 538 (559)
Q Consensus 489 ~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~-~kAv~~LH~~f 538 (559)
+|+++++|+.|++++|+|.||++ |+.+|+|.+++++. .++...+++++
T Consensus 320 ~g~~a~if~~l~~~~I~Vd~I~s--se~sIs~~i~~~~~~~~~~~~~~~~l 368 (448)
T PRK09084 320 RGFLAEVFGILARHKISVDLITT--SEVSVSLTLDTTGSTSTGDTLLTQAL 368 (448)
T ss_pred ccHHHHHHHHHHHcCCeEEEEec--cCcEEEEEEechhhhhhhhHHHHHHH
Confidence 99999999999999999999997 78999999999884 33443444443
|
|
| >PRK05925 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.012 Score=64.38 Aligned_cols=96 Identities=9% Similarity=0.149 Sum_probs=71.0
Q ss_pred HhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCcc----------ceeeEEeeecCeEEEEEEecCccchhhHHHHHH
Q 008621 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK----------AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVF 416 (559)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~----------~~It~Is~~~~ialItV~~~~m~~~~g~larIf 416 (559)
.+-++.+.++||++.+.++.. ... +...+..+... ..+..|...+++++|++.|.+|.+ +++.+++|
T Consensus 316 ~~if~~l~~~~I~vd~i~s~~-~si-s~~i~~~~~~~~~~~~l~~~l~~~~~i~~~~~~a~VsvVG~gm~~-~~v~~~~~ 392 (440)
T PRK05925 316 EDVLGILRSLGIVPGLVMAQN-LGV-YFTIDDDDISEEYPQHLTDALSAFGTVSCEGPLALITMIGAKLAS-WKVVRTFT 392 (440)
T ss_pred HHHHHHHHHcCCcEEEEeccC-CEE-EEEEechhccHHHHHHHHHHhcCCceEEEECCEEEEEEeCCCccc-ccHHHHHH
Confidence 467889999999985554331 111 11122111101 123457788999999999999987 78999999
Q ss_pred HHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 417 STFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 417 ~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+.|++.||++.++++|+.+|+|.|+.++.
T Consensus 393 ~aL~~~~Ini~~i~~s~~~is~vV~~~d~ 421 (440)
T PRK05925 393 EKLRGYQTPVFCWCQSDMALNLVVNEELA 421 (440)
T ss_pred HHHhhCCCCEEEEECCCceEEEEEehHHH
Confidence 99999999999999999999999987753
|
|
| >KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0078 Score=65.21 Aligned_cols=123 Identities=16% Similarity=0.226 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCceEEecccceE--EEEec--------CCCC-ceeeecchHHHHHHHhhchhcCCcEEEEc
Q 008621 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIG--FITTD--------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVT 267 (559)
Q Consensus 199 s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~--iit~~--------~~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~ 267 (559)
-+||.--. +...|++.|-.++..++...- +++.+ +|+. .++...+.+++. .+++.|.+|+++
T Consensus 170 ~~~E~n~~--lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~-----~l~~~G~mp~L~ 242 (520)
T KOG2436|consen 170 VSLEANLN--LVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIR-----HLLDAGSMPLLR 242 (520)
T ss_pred chhhhhhH--HHHHHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhh-----hhhhCCCchheh
Confidence 34666433 345689999888887765421 23433 2222 233334444443 345688999998
Q ss_pred CCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHH
Q 008621 268 GFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY 339 (559)
Q Consensus 268 Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~ 339 (559)
- .+.+ .+|+++|.+ +|..|+.+|.+|+++.+++.+|+.=+...+ .+.++.++.+|...+..
T Consensus 243 s-la~T-aSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~g~~l~e~------ge~~S~l~l~~e~~~l~ 303 (520)
T KOG2436|consen 243 S-LAAT-ASGQVLNVN---ADEVAGELALALGPDKLILLMDKGRILKEN------GEDISSLILQEEDAGLR 303 (520)
T ss_pred h-hccc-CccceEEee---HHHHhhHHHhccCcceeEEecccccccccC------cccccccccchhHhhhh
Confidence 8 6767 489999999 999999999999999999999972233333 45567777777666554
|
|
| >PRK08210 aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0066 Score=65.67 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=75.3
Q ss_pred CcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCcc--ce---e-eEEeeecCeEEEEEEecCccchhhHHHHHH
Q 008621 343 QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK--AV---L-TSIVLKRNVTMLDIVSTRMLGQYGFLAKVF 416 (559)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~--~~---I-t~Is~~~~ialItV~~~~m~~~~g~larIf 416 (559)
+.+..+-+..+.++||++...+... + .++......+..+ .. . ..+...+++++|++.|.+|.+.+|+++++|
T Consensus 283 ~g~la~If~~L~~~~I~i~~i~~~~-~-~is~~v~~~~~~~a~~~l~~~~~~v~~~~~~a~isvvG~~~~~~~g~~~~i~ 360 (403)
T PRK08210 283 YDLQQEVFKALAEAGISVDFINIFP-T-EVVFTVSDEDSEKAKEILENLGLKPSVRENCAKVSIVGAGMAGVPGVMAKIV 360 (403)
T ss_pred chHHHHHHHHHHHcCCeEEEEEecC-c-eEEEEEcHHHHHHHHHHHHHhCCcEEEeCCcEEEEEEcCCcCCCccHHHHHH
Confidence 3455567788899999988765442 2 3444433221110 00 0 146678999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEecCceeEEEeCCCc
Q 008621 417 STFEDLGISVDVVATSEVSLSLTLDPSK 444 (559)
Q Consensus 417 ~~L~~~gI~Vd~IstSe~sIs~~v~~~~ 444 (559)
+.|+++||++.++++|+.+++|.++.++
T Consensus 361 ~aL~~~~I~i~~~~~s~~~is~vv~~~~ 388 (403)
T PRK08210 361 TALSEEGIEILQSADSHTTIWVLVKEED 388 (403)
T ss_pred HHHHhCCCCEEEEecCCCEEEEEEcHHH
Confidence 9999999999999999999999998765
|
|
| >cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.01 Score=45.12 Aligned_cols=46 Identities=30% Similarity=0.484 Sum_probs=37.5
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC-----ceeEEEeCCCc
Q 008621 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSK 444 (559)
Q Consensus 397 lItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe-----~sIs~~v~~~~ 444 (559)
+|++.+ +.+.+|+++++|+.|.++||++++++++. .+++|++++++
T Consensus 2 ~v~v~~--~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~~~ 52 (61)
T cd04891 2 QVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSD 52 (61)
T ss_pred EEEEec--CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeHHH
Confidence 466654 56789999999999999999999998753 56889997654
|
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK08841 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.012 Score=63.38 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=67.8
Q ss_pred HhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCc---cceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCC
Q 008621 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS---KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLG 423 (559)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~---~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~g 423 (559)
++.+..+.++||++....... ..=+.+.+..+.. ......+...+++++|++.|.+ .+|+.+++|+.|.+++
T Consensus 269 ~~i~~~l~~~~i~v~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~~~~a~vsvVG~~---~~gv~~~~~~aL~~~~ 343 (392)
T PRK08841 269 PSLTKQCQMLGIEVWNVIEEA--DRAQIVIKQDACAKLKLVFDDKIRNSESVSLLTLVGLE---ANGMVEHACNLLAQNG 343 (392)
T ss_pred HHHHHHHHHcCCCEEEEEecC--CcEEEEECHHHHHHHHHhCcccEEEeCCEEEEEEECCC---ChHHHHHHHHHHHhCC
Confidence 456677888999977765322 1112222222111 1112246778999999999975 4899999999999999
Q ss_pred CcEEEEEecCceeEEEeCCCch
Q 008621 424 ISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 424 I~Vd~IstSe~sIs~~v~~~~~ 445 (559)
|++.++++|+.+|+|.++.++.
T Consensus 344 I~i~~i~~s~~~is~vv~~~~~ 365 (392)
T PRK08841 344 IDVRQCSTEPQSSMLVLDPANV 365 (392)
T ss_pred CCEEEEECCCcEEEEEEeHHHH
Confidence 9999999999999999987653
|
|
| >cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.023 Score=46.24 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=55.4
Q ss_pred EEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 478 IISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 478 iISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
.|-+-+. |...+|+..++|+.|+++++++.+..+.+.++++++..+.+..+++++.|.+.|-.
T Consensus 3 alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p~ 66 (71)
T cd04910 3 ALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFPN 66 (71)
T ss_pred EEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCcc
Confidence 4556675 77888999999999999999999999998999999888888999999999998853
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase |
| >PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.014 Score=69.18 Aligned_cols=108 Identities=16% Similarity=0.244 Sum_probs=80.0
Q ss_pred HHHHHHHHHhCCCcEEEEEecCc--eeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-cccc
Q 008621 412 LAKVFSTFEDLGISVDVVATSEV--SLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRS 488 (559)
Q Consensus 412 larIf~~L~~~gI~Vd~IstSe~--sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~ 488 (559)
-.+-++...++||++....+... .=++..... . .-..+..|+..+|+++|++-|. |...
T Consensus 274 ~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~--~----------------~~~~v~~It~~~~v~lItv~~~~~~~~ 335 (861)
T PRK08961 274 HPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDA--E----------------PVPGVKAISRKNGIVLVSMETIGMWQQ 335 (861)
T ss_pred CHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCC--C----------------CCCcceeEEEECCEEEEEEecCCcccc
Confidence 35566778899999887765332 112222111 0 0012456888899999999996 7788
Q ss_pred chHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH---HHHHHHHHHHhc
Q 008621 489 SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA---EQCVRALHETFF 539 (559)
Q Consensus 489 ~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~---~kAv~~LH~~f~ 539 (559)
+++++++|+.|++++|+|.||++ |+.+++|.+++.+. +++++.|..+|-
T Consensus 336 ~g~~a~if~~la~~~I~Vd~I~s--se~sis~~i~~~~~~~~~~~~~~l~~~l~ 387 (861)
T PRK08961 336 VGFLADVFTLFKKHGLSVDLISS--SETNVTVSLDPSENLVNTDVLAALSADLS 387 (861)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEc--CCCEEEEEEccccccchHHHHHHHHHHHh
Confidence 99999999999999999999987 78999999999875 367777777764
|
|
| >COG3603 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.025 Score=49.93 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=57.7
Q ss_pred ceeecccceeEEEEEeec-cccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008621 468 AIVNLLQHRSIISLIGNV-QRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 468 ~~v~~~~~~aiISIVG~~-~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
..|+...+-+...+-|.. -.-+|+++.+.+.|+++||.|+.+|+-..+. ++|+++|.++|+++|.++
T Consensus 55 ~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStydtDh---iLVr~~dLekAv~~L~ea 122 (128)
T COG3603 55 DVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYDTDH---ILVREEDLEKAVKALEEA 122 (128)
T ss_pred cceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEeccCce---EEEehhhHHHHHHHHHHc
Confidence 356677788889999963 3568999999999999999999999976666 799999999999999865
|
|
| >cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.03 Score=44.50 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=38.5
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC-----ceeEEEeCCCch
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSKL 445 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe-----~sIs~~v~~~~~ 445 (559)
++|++.+ +.+.+|+++++|+.|+++||+++++.++. .+++|+++.++.
T Consensus 2 ~~v~v~~--~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~~d~ 54 (75)
T cd04913 2 AKITLRG--VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDL 54 (75)
T ss_pred eEEEECC--CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecHHHH
Confidence 5677754 56789999999999999999999998642 368899987653
|
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee |
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.028 Score=43.75 Aligned_cols=54 Identities=28% Similarity=0.424 Sum_probs=44.9
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc-----eEEEEEEecccHHHHHHHHHHHh
Q 008621 485 VQRSSLILEKAFRVLRRSGVNVQMISQGASK-----VNISLIVNDDEAEQCVRALHETF 538 (559)
Q Consensus 485 ~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe-----~sIs~vV~~~d~~kAv~~LH~~f 538 (559)
+.+.||+++++++.|+++|+||..+.+..+. ..+.+..+..+.+++++.|++.+
T Consensus 7 ~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 7 VPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALP 65 (66)
T ss_dssp EETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHccc
Confidence 4578999999999999999999998887664 34666677888899999998753
|
ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C .... |
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.23 Score=39.91 Aligned_cols=55 Identities=24% Similarity=0.422 Sum_probs=40.8
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEec---C--ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhc
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATS---E--VSLSLTLDPSKLWSRELIQQASELDHVVEELEKIA 468 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstS---e--~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~ 468 (559)
.+.+|.++++++.|+++|++++++.++ + ..++|+++-++.. ..++.+++.|+++.
T Consensus 8 ~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~--------~~l~~l~~~L~~i~ 67 (76)
T cd04888 8 EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN--------GDIDELLEELREID 67 (76)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH--------HHHHHHHHHHhcCC
Confidence 467999999999999999999999753 2 4578888765531 14666777777644
|
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.1 Score=43.43 Aligned_cols=107 Identities=7% Similarity=0.111 Sum_probs=69.4
Q ss_pred cCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe----cCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhh-
Q 008621 393 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKI- 467 (559)
Q Consensus 393 ~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist----Se~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~- 467 (559)
.+..+|++.|. ++||+.+++.+.|+++|.|+.-..+ ++....+.+..... ... .++..+..+...
T Consensus 6 ~~~lviTviG~---DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~-~~~------~le~~L~~l~~~~ 75 (190)
T PRK11589 6 QHYLVITALGA---DRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWN-AIT------LIESTLPLKGAEL 75 (190)
T ss_pred ccEEEEEEEcC---CCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChh-HHH------HHHHHHHhhhhhc
Confidence 35567888875 6899999999999999999887653 35566666644321 111 233333333211
Q ss_pred -ceeec-------ccc---eeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEe
Q 008621 468 -AIVNL-------LQH---RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQ 511 (559)
Q Consensus 468 -~~v~~-------~~~---~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isq 511 (559)
-.+.+ ... -..|+++| ...||++.++.+.|++.||||.-.++
T Consensus 76 ~L~i~v~~~~~~~~~~~~~~~~v~v~G--~DrPGIV~~vT~~la~~~iNI~~L~T 128 (190)
T PRK11589 76 DLLIVMKRTTARPRPAMPATVWVQVEV--ADSPHLIERFTALFDSHHMNIAELVS 128 (190)
T ss_pred CeEEEEEeccccccccCCceEEEEEEE--CCCCCHHHHHHHHHHHcCCChhheEE
Confidence 01111 011 14677777 46899999999999999999986544
|
|
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.16 Score=42.92 Aligned_cols=62 Identities=27% Similarity=0.360 Sum_probs=49.0
Q ss_pred eeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecC--CceEEEEEEecccHHHHHHHHHHHhc
Q 008621 476 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA--SKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 476 ~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqga--Se~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
.++|+++| +..||+.+.++.+|+++|+||.-|+|.- .--++.++|+-.....-...+.++|-
T Consensus 3 ~avITV~G--kDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~ 66 (90)
T COG3830 3 RAVITVIG--KDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELA 66 (90)
T ss_pred eEEEEEEc--CCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHH
Confidence 57899999 4678999999999999999999999865 34467777887766666666666654
|
|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.49 Score=37.91 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=44.4
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEecC---CceEEEEEEecccHHHHHHHHHHHhc
Q 008621 486 QRSSLILEKAFRVLRRSGVNVQMISQGA---SKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 486 ~~~~gv~~ri~~~L~~~~InI~~Isqga---Se~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
...||.++++++.|++.++|+.++++.. ....++|.++..+.+..++.|.+.+-
T Consensus 8 ~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~ 64 (76)
T cd04888 8 EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELR 64 (76)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHh
Confidence 4568999999999999999999998843 23568899998888877777777765
|
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.8 Score=42.60 Aligned_cols=63 Identities=19% Similarity=0.428 Sum_probs=44.1
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC-----ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhc
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSKLWSRELIQQASELDHVVEELEKIA 468 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe-----~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~ 468 (559)
.+.+.+. +.+.+|.++++++.|+++|+|++.+.++. .+++|+++-++.. ..++.++..|+.+.
T Consensus 69 ~vtL~i~---l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~--------~~L~~Li~~L~~i~ 136 (147)
T PRK04435 69 IITLSLL---LEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME--------GDIDELLEKLRNLD 136 (147)
T ss_pred EEEEEEE---EecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH--------HHHHHHHHHHHcCC
Confidence 3344554 34679999999999999999999997532 4578888765431 14666777776633
|
|
| >cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.33 Score=40.02 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=45.4
Q ss_pred EEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH-----HHHHHHHHHHhcc
Q 008621 479 ISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA-----EQCVRALHETFFE 540 (559)
Q Consensus 479 ISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~-----~kAv~~LH~~f~~ 540 (559)
|.+--. |....|+..|+++.|+++||++..+.+ +.-++|+++++++. ++.++.|++++..
T Consensus 4 I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~PS--GID~~Siii~~~~~~~~~~~~i~~~i~~~~~p 69 (76)
T cd04911 4 IYISKYLMNREVGFGRKLLSILEDNGISYEHMPS--GIDDISIIIRDNQLTDEKEQKILAEIKEELHP 69 (76)
T ss_pred EehhHhhccchhcHHHHHHHHHHHcCCCEeeecC--CCccEEEEEEccccchhhHHHHHHHHHHhcCC
Confidence 333344 556689999999999999999999987 46668899999944 3456677776544
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.4 Score=50.79 Aligned_cols=70 Identities=17% Similarity=0.373 Sum_probs=59.7
Q ss_pred ceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHH--HHH-HHHHHHhc
Q 008621 468 AIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE--QCV-RALHETFF 539 (559)
Q Consensus 468 ~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~--kAv-~~LH~~f~ 539 (559)
..|...+|+.++-|-.. |....|+++++|..|.+.||.|..|++ ||.+||+-.+..+.. +.+ +.||+.+.
T Consensus 385 TsI~lK~nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDvvaT--SEV~iSltL~~~~~~sreliq~~l~~a~e 458 (559)
T KOG0456|consen 385 TSIVLKRNVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVAT--SEVSISLTLDPSKLDSRELIQGELDQAVE 458 (559)
T ss_pred eEEEEeccEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEEe--eeEEEEEecChhhhhhHHHHHhhHHHHHH
Confidence 45777899999999997 888899999999999999999999998 899999999888665 333 67777664
|
|
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.78 Score=35.38 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=24.4
Q ss_pred ccchhhHHHHHHHHHHhCCCcEEEEEe
Q 008621 405 MLGQYGFLAKVFSTFEDLGISVDVVAT 431 (559)
Q Consensus 405 m~~~~g~larIf~~L~~~gI~Vd~Ist 431 (559)
+.+.||.++++++.|+++|+|+..+.+
T Consensus 7 ~~drpG~l~~v~~~la~~~inI~~~~~ 33 (66)
T PF01842_consen 7 VPDRPGILADVTEILADHGINIDSISQ 33 (66)
T ss_dssp EETSTTHHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHeEE
Confidence 457899999999999999999999864
|
ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C .... |
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.75 Score=36.24 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008621 485 VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 485 ~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
+.+.||.++++...|.++|+||.-+.....+....+.+..++.+++.+.|-+.
T Consensus 8 v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~ 60 (66)
T cd04908 8 LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEA 60 (66)
T ss_pred EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHC
Confidence 56789999999999999999997544322322466666667777888887654
|
Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains. |
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Probab=89.98 E-value=1 Score=32.02 Aligned_cols=49 Identities=31% Similarity=0.509 Sum_probs=38.1
Q ss_pred ccchHHHHHHHHHHhCCCcEEEEEecCC----ceEEEEEEecc-cHHHHHHHHH
Q 008621 487 RSSLILEKAFRVLRRSGVNVQMISQGAS----KVNISLIVNDD-EAEQCVRALH 535 (559)
Q Consensus 487 ~~~gv~~ri~~~L~~~~InI~~IsqgaS----e~sIs~vV~~~-d~~kAv~~LH 535 (559)
..++.+.++++.|.+.++++..+.+... ...+++.++.. +.+.+++.|+
T Consensus 7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 60 (60)
T cd02116 7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEALE 60 (60)
T ss_pred CCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHhC
Confidence 3578999999999999999999887543 36688888887 6666666553
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p |
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.1 Score=37.68 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=39.6
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEecC------ceeEEEeC-CCchhhHHHHHHHHHHHHHHHHHhhh
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLD-PSKLWSRELIQQASELDHVVEELEKI 467 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstSe------~sIs~~v~-~~~~~~~~~~~~~~~l~~~~~~L~~~ 467 (559)
.+.||+++|+...|.+.|+|++.++.++ ..++++++ .++ ..++++.++|++.
T Consensus 10 eN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~----------~~ieqI~kQL~Kl 68 (84)
T PRK13562 10 ADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD----------TSLHILIKKLKQQ 68 (84)
T ss_pred ECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH----------HHHHHHHHHHhCC
Confidence 3689999999999999999999997543 46788886 432 1456677778763
|
|
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
Probab=89.61 E-value=1.1 Score=36.99 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=39.1
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEecC------ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQASELDHVVEELEKI 467 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstSe------~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~ 467 (559)
.+.||+++|+...|.+.|+|++.++.++ ..+++++..++ ..++++.++|++.
T Consensus 10 ~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~----------~~i~qi~kQL~KL 67 (76)
T PRK06737 10 HNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE----------NEATLLVSQLKKL 67 (76)
T ss_pred ecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH----------HHHHHHHHHHhCC
Confidence 3689999999999999999999997542 34677765442 1466677788774
|
|
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.46 E-value=2.4 Score=35.00 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=39.1
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEecC------ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQASELDHVVEELEKI 467 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstSe------~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~ 467 (559)
.+.||+++|+...|.+.|+|++.++.++ ..+++++..+. .++.+.++|++.
T Consensus 11 ~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~-----------~i~ql~kQL~KL 67 (76)
T PRK11152 11 RFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASER-----------PIDLLSSQLNKL 67 (76)
T ss_pred ECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCc-----------hHHHHHHHHhcC
Confidence 3689999999999999999999997433 46788886321 456677788763
|
|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
Probab=87.95 E-value=2.3 Score=34.67 Aligned_cols=58 Identities=19% Similarity=0.340 Sum_probs=38.3
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecC--CceEEEEEEecccHHHHHHHHHHHh
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA--SKVNISLIVNDDEAEQCVRALHETF 538 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqga--Se~sIs~vV~~~d~~kAv~~LH~~f 538 (559)
-+|+++|. ..||+++.++.+|++.|.|+.-+.|.. ..-++.+.|+-. +.....|.++|
T Consensus 3 ~vItv~G~--DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--~~~~~~l~~~L 62 (76)
T PF13740_consen 3 LVITVVGP--DRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--EDSLERLESAL 62 (76)
T ss_dssp EEEEEEEE----TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--HHHHHHHHHHH
T ss_pred EEEEEEec--CCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--cccHHHHHHHH
Confidence 46888884 579999999999999999998766544 444555555555 33444555544
|
|
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.56 E-value=1.7 Score=37.46 Aligned_cols=51 Identities=16% Similarity=0.337 Sum_probs=38.5
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEecC------ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQASELDHVVEELEKI 467 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstSe------~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~ 467 (559)
.+.||+++|+...|++.|.|++.++.++ ..+++++..++ .++++.++|++.
T Consensus 16 ~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~-----------~i~Qi~kQL~KL 72 (96)
T PRK08178 16 RNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQ-----------RLEQMISQIEKL 72 (96)
T ss_pred ECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCch-----------HHHHHHHHHhCC
Confidence 3689999999999999999999996432 45777776321 456677788763
|
|
| >COG4492 PheB ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.39 E-value=5.8 Score=36.06 Aligned_cols=65 Identities=20% Similarity=0.432 Sum_probs=48.5
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEec-----CceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEE
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIIS 480 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstS-----e~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiIS 480 (559)
....|.++++++.+++.++||.-|.|+ -.++++.++.+.... ..+.++.+|++ .++++.|-
T Consensus 80 edr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~--------~V~~ii~kl~k------~e~V~kVe 145 (150)
T COG4492 80 EDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEK--------DVDKIIEKLRK------VEGVEKVE 145 (150)
T ss_pred hhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhh--------hHHHHHHHHhc------ccceeEEE
Confidence 467899999999999999999998754 356788887664321 56677777766 44667777
Q ss_pred EEee
Q 008621 481 LIGN 484 (559)
Q Consensus 481 IVG~ 484 (559)
++|.
T Consensus 146 ivgs 149 (150)
T COG4492 146 IVGS 149 (150)
T ss_pred Eeec
Confidence 7773
|
|
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
Probab=86.23 E-value=2.6 Score=31.75 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc-eEEEEEEecccHHHHHHHH
Q 008621 485 VQRSSLILEKAFRVLRRSGVNVQMISQGASK-VNISLIVNDDEAEQCVRAL 534 (559)
Q Consensus 485 ~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe-~sIs~vV~~~d~~kAv~~L 534 (559)
+...||.++++.+.|.++|+||..+.....+ ..-.+.+.-++.++|.+.|
T Consensus 5 ~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 5 VENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred eCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 4567999999999999999999654433322 2333444555577777765
|
Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A |
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=2.7 Score=35.38 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=40.1
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEecCCce----EEEEEEe-cccH--HHHHHHHHHH
Q 008621 486 QRSSLILEKAFRVLRRSGVNVQMISQGASKV----NISLIVN-DDEA--EQCVRALHET 537 (559)
Q Consensus 486 ~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~----sIs~vV~-~~d~--~kAv~~LH~~ 537 (559)
.+.||++.|+...+.+.|+||..++.|.++. .+++++. .++. ++..+.|++-
T Consensus 10 eN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 10 ADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQ 68 (84)
T ss_pred ECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCC
Confidence 5679999999999999999999999998765 5888886 4432 3555555543
|
|
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=85.60 E-value=19 Score=34.07 Aligned_cols=90 Identities=10% Similarity=0.218 Sum_probs=56.1
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEecC------ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhce---ee-----
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAI---VN----- 471 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstSe------~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~---v~----- 471 (559)
.+.||.++++...|+++|+|++.++.++ ..+++.++.++- .++++.++|++.-. +.
T Consensus 10 eN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~----------~i~qi~kQl~KLidV~~V~~~~~~ 79 (161)
T PRK11895 10 ENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQ----------VIEQITKQLNKLIDVLKVVDLTEE 79 (161)
T ss_pred cCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHH----------HHHHHHHHHhccccEEEEEecCCc
Confidence 4789999999999999999999876332 236777765421 45566777776321 11
Q ss_pred --cccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEE
Q 008621 472 --LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMI 509 (559)
Q Consensus 472 --~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~I 509 (559)
+.+.++++-+...-.. -..+++...-.+-+|.-+
T Consensus 80 ~~v~rEl~LiKv~~~~~~----r~~i~~i~~~f~a~ivdv 115 (161)
T PRK11895 80 AHVERELALVKVRASGEN----RAEILRLADIFRAKIVDV 115 (161)
T ss_pred chhheEEEEEEEECCccc----HHHHHHHHHHhCCEEEEe
Confidence 1234677766653211 235555555555666555
|
|
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
Probab=84.83 E-value=20 Score=33.72 Aligned_cols=90 Identities=11% Similarity=0.200 Sum_probs=55.3
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEecC------ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhce---ee-----
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAI---VN----- 471 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstSe------~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~---v~----- 471 (559)
.+.||.++++...|.++|+|++.+..++ ..+++.++.++ . .++++.++|++.-. +.
T Consensus 9 en~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~----~------~i~qi~kQl~Kli~V~~V~~~~~~ 78 (157)
T TIGR00119 9 ENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDD----K------VLEQITKQLNKLVDVIKVSDLTES 78 (157)
T ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCH----H------HHHHHHHHHhcCccEEEEEecCCC
Confidence 4689999999999999999999875332 23677776532 1 45556667776321 11
Q ss_pred --cccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEE
Q 008621 472 --LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMI 509 (559)
Q Consensus 472 --~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~I 509 (559)
+.+.+++|-+...- .--..+++...-.+-+|.-+
T Consensus 79 ~~v~rEl~LiKv~~~~----~~r~~i~~i~~~f~a~ivdv 114 (157)
T TIGR00119 79 AIVERELCLVKVSAPG----EGRDEIIRLTNIFRGRIVDV 114 (157)
T ss_pred cceeeEEEEEEEECCc----cCHHHHHHHHHHhCCEEEEe
Confidence 12345666665532 12245556655555565554
|
acetohydroxyacid synthase is a synonym. |
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.34 E-value=6.5 Score=36.52 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=42.5
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCC---ceEEEEEEecccHHHHHHHHHHHhc
Q 008621 485 VQRSSLILEKAFRVLRRSGVNVQMISQGAS---KVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 485 ~~~~~gv~~ri~~~L~~~~InI~~IsqgaS---e~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
+...||+++++++.+++.|+||..|+|... ..+++|-++..+.+..++.|=+.+-
T Consensus 76 l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~ 133 (147)
T PRK04435 76 LEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLR 133 (147)
T ss_pred EecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHH
Confidence 445689999999999999999999998542 2457888888877756666655553
|
|
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
Probab=81.20 E-value=3.8 Score=32.36 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=36.6
Q ss_pred chhhHHHHHHHHHHhCCCcEEEEEecC------ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 008621 407 GQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQASELDHVVEELEKI 467 (559)
Q Consensus 407 ~~~g~larIf~~L~~~gI~Vd~IstSe------~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~ 467 (559)
+.||.+.|+...|.+.|++++.++.++ ..++++++.++- .++.+.++|++.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~----------~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDR----------EIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CC----------HHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCch----------hHHHHHHHHhcc
Confidence 368999999999999999999986432 457777766331 455677777764
|
|
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
Probab=80.65 E-value=8.5 Score=36.88 Aligned_cols=57 Identities=23% Similarity=0.407 Sum_probs=41.5
Q ss_pred EEEEeeccccchHHHHHHHHHHhCCCcEEEEEecC----CceEEEEEEeccc--HHHHHHHHHHH
Q 008621 479 ISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA----SKVNISLIVNDDE--AEQCVRALHET 537 (559)
Q Consensus 479 ISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqga----Se~sIs~vV~~~d--~~kAv~~LH~~ 537 (559)
+++++ .+.||++.|+...|++.|+||..++.+. ....++++++.++ .++..+.|++-
T Consensus 5 isvlv--~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KL 67 (174)
T CHL00100 5 LSVLV--EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKL 67 (174)
T ss_pred EEEEE--eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHH
Confidence 44554 4689999999999999999999988765 3445888898762 34444444443
|
|
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
Probab=80.12 E-value=5.9 Score=30.33 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc--eEEEEEEecccHHHHHHHHHHH
Q 008621 485 VQRSSLILEKAFRVLRRSGVNVQMISQGASK--VNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 485 ~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe--~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
+...||.++++.+.|+++|+||..+.+.... ....+.+.-++.+++.+.|-+.
T Consensus 6 ~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~~ 60 (65)
T cd04882 6 VPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQER 60 (65)
T ss_pred eCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHHC
Confidence 4578999999999999999999766543222 2233444444577777766543
|
Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 559 | ||||
| 2cdq_A | 510 | Crystal Structure Of Arabidopsis Thaliana Aspartate | 0.0 | ||
| 3c1n_C | 473 | Crystal Structure Of Allosteric Inhibition Threonin | 2e-75 | ||
| 2hmf_A | 469 | Structure Of A Threonine Sensitive Aspartokinase Fr | 4e-75 | ||
| 2j0x_A | 449 | Crystal Structure Of E. Coli Aspartokinase Iii In C | 2e-52 | ||
| 3tvi_A | 446 | Crystal Structure Of Clostridium Acetobutylicum Asp | 2e-43 | ||
| 3ab4_A | 421 | Crystal Structure Of Feedback Inhibition Resistant | 1e-37 | ||
| 3aaw_A | 421 | Crystal Structure Of Aspartate Kinase From Coryneba | 2e-37 | ||
| 3l76_A | 600 | Crystal Structure Of Aspartate Kinase From Synechoc | 7e-24 | ||
| 3mah_A | 157 | A Putative C-Terminal Regulatory Domain Of Aspartat | 1e-10 | ||
| 4go5_X | 200 | The Regulatory Subunit Of Aspartate Kinase From Myc | 8e-07 | ||
| 3s1t_A | 181 | Structure Of The Regulatory Domain Of Aspartokinase | 4e-05 | ||
| 2dt9_A | 167 | Crystal Structure Of The Regulatory Subunit Of Aspa | 5e-05 | ||
| 3ab4_B | 178 | Crystal Structure Of Feedback Inhibition Resistant | 2e-04 | ||
| 2dtj_A | 178 | Crystal Structure Of Regulatory Subunit Of Aspartat | 3e-04 |
| >pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase Complexed With Lysine And S-Adenosylmethionine Length = 510 | Back alignment and structure |
|
| >pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473 | Back alignment and structure |
|
| >pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469 | Back alignment and structure |
|
| >pdb|2J0X|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex With Lysine And Aspartate (T-State) Length = 449 | Back alignment and structure |
|
| >pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate Kinase (Caak): An Important Allosteric Enzyme For Industrial Amino Acids Production Length = 446 | Back alignment and structure |
|
| >pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421 | Back alignment and structure |
|
| >pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421 | Back alignment and structure |
|
| >pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis Length = 600 | Back alignment and structure |
|
| >pdb|3MAH|A Chain A, A Putative C-Terminal Regulatory Domain Of Aspartate Kinase From Porphyromonas Gingivalis W83 Length = 157 | Back alignment and structure |
|
| >pdb|4GO5|X Chain X, The Regulatory Subunit Of Aspartate Kinase From Mycobacterium Tuberculosis Length = 200 | Back alignment and structure |
|
| >pdb|3S1T|A Chain A, Structure Of The Regulatory Domain Of Aspartokinase (Rv3709c; Ak-Beta) In Complex With Threonine From Mycobacterium Tuberculosis Length = 181 | Back alignment and structure |
|
| >pdb|2DT9|A Chain A, Crystal Structure Of The Regulatory Subunit Of Aspartate Kinase From Thermus Flavus Length = 167 | Back alignment and structure |
|
| >pdb|3AB4|B Chain B, Crystal Structure Of Feedback Inhibition Resistant Mutant Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 178 | Back alignment and structure |
|
| >pdb|2DTJ|A Chain A, Crystal Structure Of Regulatory Subunit Of Aspartate Kinase From Corynebacterium Glutamicum Length = 178 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510 | Back alignment and structure |
|---|
Score = 590 bits (1522), Expect = 0.0
Identities = 390/489 (79%), Positives = 434/489 (88%), Gaps = 3/489 (0%)
Query: 54 VSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERP 113
+ V+E KK+E + + EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP E P
Sbjct: 1 MGSRNIVRAVLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESP 59
Query: 114 VIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHL 173
VIVLSAMGKTTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I T+L
Sbjct: 60 VIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVILTYL 119
Query: 174 EELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233
EELEQLLKGIAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IGFITT
Sbjct: 120 EELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITT 179
Query: 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATT 293
DDFTN DILEATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDLTATT
Sbjct: 180 DDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATT 239
Query: 294 IGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPA 353
IGKALGL+EIQVWKDVDGVLTCDP I+ A PVPYLTFDEAAELAYFGAQVLHPQSMRPA
Sbjct: 240 IGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPA 299
Query: 354 REGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLA 413
REG+IPVRVKNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ GFLA
Sbjct: 300 REGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLA 359
Query: 414 KVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLL 473
KVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ ELDHVVEELEKIA+VNLL
Sbjct: 360 KVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQ--ELDHVVEELEKIAVVNLL 417
Query: 474 QHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRA 533
+ R+IISLIGNVQ SSLILE+AF VL GVNVQMISQGASKVNIS IVN+ EAE CV+A
Sbjct: 418 KGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQA 477
Query: 534 LHETFFESD 542
LH++FFES
Sbjct: 478 LHKSFFESG 486
|
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 479 ISLIGNVQRSSL-----ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRA 533
++++ ++ + + L K F + G++V +++ S+V+ISL ++ +
Sbjct: 341 VTML-DIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELI 397
Query: 534 LHETF-FESDLANLDCV 549
E +L + V
Sbjct: 398 QQELDHVVEELEKIAVV 414
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449 | Back alignment and structure |
|---|
Score = 507 bits (1308), Expect = e-177
Identities = 157/463 (33%), Positives = 242/463 (52%), Gaps = 25/463 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS N ++VLSA TN L+ E
Sbjct: 6 VSKFGGTSVADFDAMNRSADIVLSDAN-VRLVVLSASAGITNLLVALAEGLE-----PGE 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE-----LTPRSRDYLV 198
++L ++++ ++ L I EE+E+LL+ I +L E +P D LV
Sbjct: 60 RFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDELV 115
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
S GE MST +F L + V+A+ +D + T D F A+ A +A +
Sbjct: 116 SHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPRL 174
Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
+ + I GF+G + TTLGRGGSD TA + +AL + +W DV G+ T DP
Sbjct: 175 NE-GLVITQGFIG-SENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 232
Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
+ AK + + F EAAE+A FGA+VLHP ++ PA DIPV V +S +P A GTL+
Sbjct: 233 VVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNK 292
Query: 379 RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSL 438
+ ++ L+RN T+L + S ML GFLA+VF ISVD++ TSEVS++L
Sbjct: 293 TENPPLF-RALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVAL 351
Query: 439 TLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIG-NVQRSSLILEKAFR 497
TLD + S ++ EL + V + + ++++LIG ++ ++ + ++ F
Sbjct: 352 TLDTTGSTSTG---DTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFG 408
Query: 498 VLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540
VL N++MI GAS N+ +V ++AEQ V+ LH FE
Sbjct: 409 VL--EPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446 | Back alignment and structure |
|---|
Score = 484 bits (1248), Expect = e-168
Identities = 130/472 (27%), Positives = 224/472 (47%), Gaps = 41/472 (8%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG---VT 140
V KFGGSSLA + + ++V +I S N R I+ SA GK TNK + C
Sbjct: 6 VTKFGGSSLADSNQFKKVKGIIDSDAN-RKYIIPSAPGKRTNKDYKITDLLYLCNAHVKN 64
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
I D + + V EL ID I LE++ K I S DY S
Sbjct: 65 GIPFDDVFKLISQRYTEIVSELNIDMDI----AYYLEKVKKNIE-----NGASSDYAASR 115
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE ++ I A YLN + A + I D + + +Y + +++
Sbjct: 116 GEYLNGVILAKYLNAEFIDAAE-------VIFFDK-SGCFDEKKSYEKIKEKVLSC---- 163
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
++ GF G + + T RGGSD+T + I + + W DV G L DP I
Sbjct: 164 -NKAVIPGFYG-SSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIV 221
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR--RS 378
+ K + +++ E EL+Y GA VLH +++ P ++ IP+ +KN+ P+ PGTLI
Sbjct: 222 ENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTH 281
Query: 379 RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSL 438
++++ +T I K+N T++ I + + GF K+ S E G+S + + + S+SL
Sbjct: 282 KEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGVDSVSL 341
Query: 439 TLDPSKLWSRELIQQASELDHVVEELEK---IAIVNLLQHRSIISLIG-NVQRSSLILEK 494
++ KL + D ++EE++K + + + ++++ +G + ++ I K
Sbjct: 342 VIEDCKL--------DGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKGIANK 393
Query: 495 AFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLANL 546
F L + VN++MI QG+S++N+ + V + E+ V++++ F E +
Sbjct: 394 IFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIYNAFNEGHHHHH 445
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 2e-79
Identities = 139/474 (29%), Positives = 221/474 (46%), Gaps = 92/474 (19%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V K+GGSSL SAER+R VAE I++ V+V SAMG TT
Sbjct: 5 VQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTT----------------- 47
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP----RSRDYL 197
DEL + + + P R D L
Sbjct: 48 ------------------DEL--------------------LELAAAVNPVPPAREMDML 69
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
++ GE +S + A + +G +A+ + G +TT+ NA I++ T V + L
Sbjct: 70 LTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALDEG- 128
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
I IV GF G T +TTLGRGGSD TA + AL +++ DVDGV T DP
Sbjct: 129 ----KICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADP 184
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
I P+A+ + L+F+E ELA G+++L +S+ AR ++P+RV++SY+ N PGTLI
Sbjct: 185 RIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIAG 243
Query: 378 SR---DMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV----- 429
S + +AVLT + ++ + ++ + + G AKVF D I++D+V
Sbjct: 244 SMEDIPVEEAVLTGVATDKSEAKVTVL--GISDKPGEAAKVFRALADAEINIDMVLQNVF 301
Query: 430 --ATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSI--ISLIGNV 485
++ T R ++A E+ + + + N+L + +SL+G
Sbjct: 302 SVEDGTTDITFTC------PRSDGRRAMEI--LKKLQVQGNWTNVLYDDQVGKVSLVGAG 353
Query: 486 QRS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538
+S + + LR VN+++IS S++ IS+++ +D+ + RALHE F
Sbjct: 354 MKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQF 405
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 1e-71
Identities = 118/500 (23%), Positives = 208/500 (41%), Gaps = 101/500 (20%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ + ER++ VA+ I V+V+SAMGK+T
Sbjct: 5 VQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKST----------------- 47
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP----RSRDYL 197
D L + + ++++P R D L
Sbjct: 48 ------------------DVL--------------------VDLAQQISPNPCRREMDML 69
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL-HGD 256
+S GE +S + + L +I A +G +T + + A ILE + L G
Sbjct: 70 LSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGK 129
Query: 257 WITDLAIPIVTGFLG-KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315
+ +V GF G + ITTLGRGGSD +A + AL +++ DV G+LT
Sbjct: 130 ------VVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTT 183
Query: 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
DP + P A+ + +T DE ELA GA+VLHP+++ AR IP+ V++S++ + PGT +
Sbjct: 184 DPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-DEPGTKV 242
Query: 376 RRSRD--------MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD 427
+ + + + ++ R+ + G +K+F + +D
Sbjct: 243 VAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALL--RVPDRPGVASKLFRDIAQQQVDID 300
Query: 428 VV-----ATSEVSLSLTLDPSKLWSRELIQQASE-LDHVVEEL----EKIAIVNLLQHRS 477
++ + ++ T+ ++L+ A + L E ++ +
Sbjct: 301 LIIQSIHDGNSNDIAFTV------VKDLLNTAEAVTSAIAPALRSYPEADQEAEIIVEKG 354
Query: 478 I--ISLIGNVQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRAL 534
I I++ G I K F+ L GVN++MIS S+V +S +++ +A++ + AL
Sbjct: 355 IAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIST--SEVKVSCVIDQRDADRAIAAL 412
Query: 535 HETFFESDLANLDCVCGSEN 554
F + + S
Sbjct: 413 SNAFGVTLSPPKNQTDTSHL 432
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 32/195 (16%), Positives = 78/195 (40%), Gaps = 15/195 (7%)
Query: 352 PAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGF 411
R+ D + ++ ++ + + L ++ + I + + G
Sbjct: 401 DQRDADRAIAALSNAFGVTLSPPKNQTDTSHLPAVRGVALDQDQAQIAIR--HVPDRPGM 458
Query: 412 LAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS----RELIQQASELDHVVEEL-EK 466
A++F+ + ISVD++ S+ P + + QA +++ L +
Sbjct: 459 AAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEA---ILQPLIKD 515
Query: 467 IAIVNLLQHRSI--ISLIGNVQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVN 523
++ +++I +S++G+ + F L + +N++MI+ S++ IS +V
Sbjct: 516 WLDAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSEIKISCVVP 573
Query: 524 DDEAEQCVRALHETF 538
D ++A H F
Sbjct: 574 QDRGVDALKAAHSAF 588
|
| >3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 1e-50
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
S D K + ++ K +T++ + S+ L + F+ K+F FE VD+VATSEV +S
Sbjct: 1 SLDTEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVS 60
Query: 438 LTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAF 496
LT+D K L +V L I V + + II ++G+++ ++ +
Sbjct: 61 LTIDNDK-----------NLPDIVRALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARII 109
Query: 497 RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542
L GV V+MIS G S N+S++V ++ ++ + AL F S
Sbjct: 110 NAL--KGVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNSR 153
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 3e-13
Identities = 75/449 (16%), Positives = 145/449 (32%), Gaps = 130/449 (28%)
Query: 97 RMREVAELILSFPNERPV--IVLSAM---GKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151
R++ +L + RP +++ + GKT +A + +S V +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VALDVCLSYKV-------QCKMD 181
Query: 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIA-MLKELTPRSRDYLVSFGECMSTRIFA 210
+ + ++ LE L++LL I + S + +
Sbjct: 182 FKIFWLNLKNCNSPETV----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS------IQ 231
Query: 211 AYLNKIGVKARQY-DAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGF 269
A L ++ +K++ Y + + + NA A F
Sbjct: 232 AELRRL-LKSKPYENCLLV----LLNVQNAKAWNA------------------------F 262
Query: 270 LGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329
C L TT + QV + T ++ H+ L
Sbjct: 263 NLS----C--KIL--------LTT-------RFKQVTDFLSAATTTHISLDHHSMT---L 298
Query: 330 TFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP---GTLIR-------RSR 379
T DE L + L RP D+P V + NP IR +
Sbjct: 299 TPDEVKSL--L-LKYLD---CRP---QDLPREVLTT-NPRRLSIIAESIRDGLATWDNWK 348
Query: 380 DMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGI---SVDVVATSEVSL 436
++ LT+I ++ ++ +L+ R + F+ L + S + + + L
Sbjct: 349 HVNCDKLTTI-IESSLNVLEPAEYRKM------------FDRLSVFPPSAHI--PTIL-L 392
Query: 437 SLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAF 496
SL +W ++I+ ++ VV +L K ++V S IS+ + + +
Sbjct: 393 SL------IWF-DVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENE 442
Query: 497 RVLRRSGVNVQMISQGASKVNISLIVNDD 525
L RS V+ I + ++ D
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 7e-08
Identities = 58/356 (16%), Positives = 110/356 (30%), Gaps = 74/356 (20%)
Query: 226 FDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRG 285
F+ G + DIL A + D+ I++ I +
Sbjct: 9 FETGEH---QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--------KEEIDHIIMS 57
Query: 286 GSDLTAT--TIGKALGLQEIQVWKDVDGVLTCDPN-------IH--PHAKPVPYLTFDEA 334
++ T L QE V K V+ VL N I + + E
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVL--RINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 335 AELAYFGAQVLHPQSMRPAREGDIPVRVKN---SYNPNAPGTLIRRSRDMS---KAVLTS 388
+ Y QV ++ R ++++ P LI + K +
Sbjct: 116 RDRLYNDNQVFAKYNVS--RLQPY-LKLRQALLELRPA-KNVLI---DGVLGSGKTWVAL 168
Query: 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLG--ISVDVVATSEVSLSLTLDPSKLW 446
V S ++ + F K+F + +L S + V L +DP+
Sbjct: 169 DVCL---------SYKVQCKMDF--KIF--WLNLKNCNSPETVLEMLQKLLYQIDPN--- 212
Query: 447 SRELIQQASELDHVVEELEKIAIVNLLQHRS-IISLI--GNVQRSSLILEKAF----RVL 499
+S + + + + + LL+ + L+ NVQ + AF ++L
Sbjct: 213 WTSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKIL 269
Query: 500 ---RRSGVNVQMISQGASKV---NISLIVNDDEAEQ-CVRALHETFFESDLANLDC 548
R V + + + + + S+ + DE + ++ L DL
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDLPREVL 323
|
| >2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} Length = 167 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 2e-11
Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 372 GTLIRRSRDMSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV 428
+M +A +T I +N + + + + G ++ D I VD+
Sbjct: 2 NATFEEDDNMERAAVTGIAFDKNQARINVRGVPD-----KPGVAYQILGAVADANIEVDM 56
Query: 429 V-----ATSEVSLSLTLDPSKLWSRELIQQASELDHVVEEL-EKIAIVNLLQHRSI--IS 480
+ + S T+ R +Q E ++ E + I ++ ++ +S
Sbjct: 57 IIQNVGSEGTTDFSFTV------PRGDYKQTLE---ILSERQDSIGAASIDGDDTVCKVS 107
Query: 481 LIGNVQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538
+G RS + K FR L G+N+QMIS S++ +S+++++ E R LH+ F
Sbjct: 108 AVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLIDEKYMELATRVLHKAF 164
|
| >3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} Length = 181 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 8e-11
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 30/172 (17%)
Query: 381 MSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV-------A 430
+LT + R+ VT++ + G+ AKVF D +++D+V
Sbjct: 2 SEDPILTGVAHDRSEAKVTIVGLPD-----IPGYAAKVFRAVADADVNIDMVLQNVSKVE 56
Query: 431 TSEVSLSLTLDPSKLWSRELIQQASELDHVVEEL-EKIAIVNLLQHRSI--ISLIGNVQR 487
+ ++ T SR++ A E ++ L +I LL I +SLIG R
Sbjct: 57 DGKTDITFTC------SRDVGPAAVE---KLDSLRNEIGFSQLLYDDHIGKVSLIGAGMR 107
Query: 488 S-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538
S + L GVN+++IS S++ IS++ D E ++ V ALHE F
Sbjct: 108 SHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAF 157
|
| >2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* Length = 178 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-10
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 381 MSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV-------A 430
M +AVLT + ++ VT+L I + G AKVF D I++D+V
Sbjct: 1 MEEAVLTGVATDKSEAKVTVLGISD-----KPGEAAKVFRALADAEINIDMVLQNVSSVE 55
Query: 431 TSEVSLSLTLDPSKLWSRELIQQASELDHVVEEL-EKIAIVNLLQHRSI--ISLIGNVQR 487
++ T R ++A E ++++L + N+L + +SL+G +
Sbjct: 56 DGTTDITFTC------PRSDGRRAME---ILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK 106
Query: 488 S-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538
S + + LR VN+++IS S++ IS+++ +D+ + RALHE F
Sbjct: 107 SHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQF 156
|
| >2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A Length = 167 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-10
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 21/139 (15%)
Query: 410 GFLAKVFSTFEDLGISVDVV-------ATSEVSLSLTLDPSKLWSRELIQQASELDHVVE 462
G AKVF + GI+VD++ S ++ T+ ++ Q+A E +E
Sbjct: 29 GIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTV------KKDFAQEALE---ALE 79
Query: 463 ELEKIAIVNLLQHRSI--ISLIGNVQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNIS 519
+ + I +S++G S + K F+ + +G N++MI+ S+V IS
Sbjct: 80 PVLAEIGGEAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVRIS 137
Query: 520 LIVNDDEAEQCVRALHETF 538
+I+ + AE +RA+H+ F
Sbjct: 138 VIIPAEYAEAALRAVHQAF 156
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 16/105 (15%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
+ A + +A + + V +VDGV DP I+ K +P+LT + ++ V
Sbjct: 119 TAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQA 178
Query: 347 -------PQSMRPAREGDIPVRVKNSYNPNA---------PGTLI 375
P +++ I V V N N ++I
Sbjct: 179 GTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSII 223
|
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 8e-08
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
+D AT +G I VDG+ DPN AK + L++++A +V+
Sbjct: 144 TDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMD 200
Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
++ A++ +P+ V N G L++
Sbjct: 201 DTAISLAKDNKLPIVV---CNMFKKGNLLQ 227
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 14/103 (13%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAEL------AYF 340
+D TA + + + +VDGV + DP A L+ + E+
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175
Query: 341 GAQVLHPQSMRPAREGDIPVRVKNSYNPN--------APGTLI 375
V+ + + I V N A GT+I
Sbjct: 176 TNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVI 218
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 3e-07
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 11/129 (8%)
Query: 263 IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI--H 320
+ + F + + +D A + A G + + ++VDG+ T DPN
Sbjct: 146 AVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDR 205
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA---------P 371
A+ +P + + A+ + V+V N P
Sbjct: 206 GQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHV 265
Query: 372 GTLIRRSRD 380
GTLIR
Sbjct: 266 GTLIRTGVR 274
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 35/195 (17%)
Query: 195 DYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLH 254
L S + + L K G+ ++ + A
Sbjct: 100 AQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAE------------VNAVVFS 147
Query: 255 GDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
G L + + +RT D + + G +++ KD DG+ T
Sbjct: 148 GMPPYKLWMRPAAEGVIPPYRT-----------DAGCFLLAEQFGCKQMIFVKDEDGLYT 196
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAR--EGDIPVRVKNSYNPNA-- 370
+P A +P ++ DE +L + + + V+V N P
Sbjct: 197 ANPKTSKDATFIPRISVDEMKAKG-LHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLT 255
Query: 371 -------PGTLIRRS 378
GT+I S
Sbjct: 256 RALAGEHVGTIITAS 270
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 6e-07
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQ------VLHPQSMRPAREGDIPV 360
+VDGV T DP P AK + + +E E+ G + V+ P + + I
Sbjct: 159 TNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKT 218
Query: 361 RVKNSYNPNA---------PGTLI 375
V + GT I
Sbjct: 219 IVIGKEDAKDLFRVIKGDHNGTTI 242
|
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-06
Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 47/234 (20%)
Query: 160 DELGIDRSIIATHLEELEQLLK----------------GIAMLKELTPRSR-DYLVSFGE 202
++G+D ++A ++ +++ G + + R+R DY+ G
Sbjct: 65 GQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGT 124
Query: 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLA 262
M++ +L K G+ R A + + E P A R
Sbjct: 125 VMNSLALQDFLEKEGIVTRVQTAITM----------GQVAEPYLPLRAVRHLEK------ 168
Query: 263 IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPH 322
G+ A L +D TA +G + + K VDGV DP ++P
Sbjct: 169 --------GRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPE 220
Query: 323 AKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
A+ + ++ E + G +V + + +P+ V +N G + R
Sbjct: 221 AELLTAVSHREVLDR---GLRVADATAFSLCMDNGMPILV---FNLLTDGNIAR 268
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
+D A +G + VDGV DP H A LT+DE G +V+
Sbjct: 145 TDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMD 201
Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
+ AR+ D+P+R+ + + PG L+R
Sbjct: 202 TAAFALARDSDLPLRI---FGMSEPGVLLR 228
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 287 SDLTATTIGKALGLQEIQVWKD-VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
+D A I + K+ VDGV DP I+P+A+ ++TF+ A +V+
Sbjct: 159 TDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVM 215
Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
++ +E +I + V +N + P ++
Sbjct: 216 DATALALCQENNINLLV---FNIDKPNAIVD 243
|
| >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 287 SDLTATTIGKALGLQEIQVWKD-VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
+D TA + I + K+ VDGV DP +A LT E + G +++
Sbjct: 143 TDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIM 199
Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
+ + + DI + V +N N G + R
Sbjct: 200 DATASTLSMDNDIDLVV---FNMNEAGNIQR 227
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
+D TA G + + VDGV CDP +P AK L++ E + +V+
Sbjct: 144 TDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMD 200
Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
+ AR+ +P+RV +N PG L +
Sbjct: 201 LSAFTLARDHGMPIRV---FNMGKPGALRQ 227
|
| >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
+D A G + + +VDGV T DP P A +TFDEA +V+
Sbjct: 143 TDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMD 199
Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
+ RE + + V + G+L R
Sbjct: 200 ATAFALCRERKLNIVV---FGIAKEGSLKR 226
|
| >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 287 SDLTATTIGKALGLQEIQVWKD-VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
+D + + I V K VDGV T DP + AK L +++ QV+
Sbjct: 149 TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVM 205
Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
++ AR+ ++P V +N + PG + R
Sbjct: 206 DQAALLLARDYNLPAHV---FNFDEPGVMRR 233
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 559 | |||
| 2cdq_A | 510 | Aspartokinase; aspartate kinase, amino acid metabo | 100.0 | |
| 3tvi_A | 446 | Aspartokinase; structural genomics, ACT domains, r | 100.0 | |
| 2j0w_A | 449 | Lysine-sensitive aspartokinase 3; feedback inhibit | 100.0 | |
| 3c1m_A | 473 | Probable aspartokinase; allosteric inhibition, thr | 100.0 | |
| 3l76_A | 600 | Aspartokinase; allostery, ACT domains, kinase tran | 100.0 | |
| 3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibit | 100.0 | |
| 2j4j_A | 226 | Uridylate kinase; transferase, nucleoside monophos | 99.97 | |
| 1ybd_A | 239 | Uridylate kinase; alpha/beta/alpha fold, hexamer, | 99.97 | |
| 2a1f_A | 247 | Uridylate kinase; PYRH, structural genomics, PSI, | 99.97 | |
| 2jjx_A | 255 | Uridylate kinase, UMP kinase; structural genomics, | 99.97 | |
| 1gs5_A | 258 | Acetylglutamate kinase; carbamate kinase, amino ac | 99.97 | |
| 2ap9_A | 299 | NAG kinase, acetylglutamate kinase, AGK; structura | 99.96 | |
| 4a7w_A | 240 | Uridylate kinase; transferase; HET: GTP; 1.80A {He | 99.96 | |
| 1z9d_A | 252 | Uridylate kinase, UK, UMP kinase; structural genom | 99.96 | |
| 3ek6_A | 243 | Uridylate kinase; UMPK unique GTP B site, alloster | 99.96 | |
| 2j5v_A | 367 | Glutamate 5-kinase; proline biosynthesis, gamma gl | 99.95 | |
| 3nwy_A | 281 | Uridylate kinase; allosterically activated form, A | 99.95 | |
| 2brx_A | 244 | Uridylate kinase; UMP kinase, amino acid kinase, p | 99.95 | |
| 2ogx_A | 276 | Molybdenum storage protein subunit alpha; open alp | 99.95 | |
| 2ij9_A | 219 | Uridylate kinase; structural genomics, protein str | 99.95 | |
| 2va1_A | 256 | Uridylate kinase; UMPK, transferase, pyrimidine bi | 99.95 | |
| 2rd5_A | 298 | Acetylglutamate kinase-like protein; protein-prote | 99.94 | |
| 2bty_A | 282 | Acetylglutamate kinase; N-acetyl-L-glutamate kinas | 99.94 | |
| 2egx_A | 269 | Putative acetylglutamate kinase; struc genomics, N | 99.94 | |
| 2ako_A | 251 | Glutamate 5-kinase; structural genomics, PSI, prot | 99.94 | |
| 2v5h_A | 321 | Acetylglutamate kinase; amino-acid biosynthesis, t | 99.93 | |
| 3mah_A | 157 | Aspartokinase; aspartate kinase, structural genomi | 99.93 | |
| 2ogx_B | 270 | Molybdenum storage protein subunit beta; open alph | 99.93 | |
| 3ll9_A | 269 | Isopentenyl phosphate kinase; mevalonate biosynthe | 99.93 | |
| 3d40_A | 286 | FOMA protein; fosfomycin, antibiotic resistance, k | 99.93 | |
| 4go7_X | 200 | Aspartokinase; transferase; 2.00A {Mycobacterium t | 99.93 | |
| 3l86_A | 279 | Acetylglutamate kinase; ARGB, amino-acid biosynthe | 99.93 | |
| 2buf_A | 300 | Acetylglutamate kinase; acetyglutamate kinase, ADP | 99.93 | |
| 1e19_A | 314 | Carbamate kinase-like carbamoylphosphate synthetas | 99.92 | |
| 3s1t_A | 181 | Aspartokinase; ACT domain, threonine binding, regu | 99.9 | |
| 3ll5_A | 249 | Gamma-glutamyl kinase related protein; alternate m | 99.9 | |
| 2dt9_A | 167 | Aspartokinase; protein-ligand complex, regulatory | 99.89 | |
| 2re1_A | 167 | Aspartokinase, alpha and beta subunits; structural | 99.87 | |
| 2dtj_A | 178 | Aspartokinase; protein-ligand complex, regulatory | 99.86 | |
| 3d2m_A | 456 | Putative acetylglutamate synthase; protein-COA-Glu | 99.86 | |
| 3zzh_A | 307 | Acetylglutamate kinase; transferase, arginine bios | 99.86 | |
| 2we5_A | 310 | Carbamate kinase 1; arginine catabolism, arginine | 99.85 | |
| 2e9y_A | 316 | Carbamate kinase; transferase, structural genomics | 99.84 | |
| 4ab7_A | 464 | Protein Arg5,6, mitochondrial; transferase, argini | 99.83 | |
| 3s6g_A | 460 | N-acetylglutamate kinase / N-acetylglutamate SYNT; | 99.83 | |
| 3k4o_A | 266 | Isopentenyl phosphate kinase; small molecule kinas | 99.83 | |
| 3l76_A | 600 | Aspartokinase; allostery, ACT domains, kinase tran | 99.82 | |
| 3s6k_A | 467 | Acetylglutamate kinase; synthase, transferase; 2.8 | 99.76 | |
| 4axs_A | 332 | Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm | 99.65 | |
| 3kzf_A | 317 | Carbamate kinase; arginine dihydrolase pathway, gi | 99.6 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 99.12 | |
| 2dtj_A | 178 | Aspartokinase; protein-ligand complex, regulatory | 98.64 | |
| 3c1m_A | 473 | Probable aspartokinase; allosteric inhibition, thr | 98.34 | |
| 4go7_X | 200 | Aspartokinase; transferase; 2.00A {Mycobacterium t | 98.27 | |
| 2dt9_A | 167 | Aspartokinase; protein-ligand complex, regulatory | 98.26 | |
| 2re1_A | 167 | Aspartokinase, alpha and beta subunits; structural | 98.2 | |
| 3mah_A | 157 | Aspartokinase; aspartate kinase, structural genomi | 98.07 | |
| 3s1t_A | 181 | Aspartokinase; ACT domain, threonine binding, regu | 98.04 | |
| 3tvi_A | 446 | Aspartokinase; structural genomics, ACT domains, r | 97.52 | |
| 3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibit | 97.43 | |
| 2cdq_A | 510 | Aspartokinase; aspartate kinase, amino acid metabo | 97.0 | |
| 2j0w_A | 449 | Lysine-sensitive aspartokinase 3; feedback inhibit | 96.35 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 96.28 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 94.84 | |
| 1zhv_A | 134 | Hypothetical protein ATU0741; NESG, ATR8, structur | 94.22 | |
| 1zvp_A | 133 | Hypothetical protein VC0802; structural genomics, | 94.12 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 93.86 | |
| 3p96_A | 415 | Phosphoserine phosphatase SERB; ssgcid, structural | 85.42 |
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-95 Score=794.22 Aligned_cols=495 Identities=79% Similarity=1.142 Sum_probs=429.4
Q ss_pred cchhhhccccccccccCcCCCcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcC
Q 008621 59 ARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG 138 (559)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~ 138 (559)
...+++++++.|+ .+..+.+++|+|+|||||||+|++++++|+++|....+++++||||||||+||.|+++++.+..++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~V~KFGGTSva~~e~i~~va~iI~~~~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~ 84 (510)
T 2cdq_A 6 IVRAVLEEKKTEA-ITEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCG 84 (510)
T ss_dssp --------------------CCCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcccchhh-hhccCCCCCeEEEEECCcccCCHHHHHHHHHHHHhccCCCEEEEEcCCCCCchHHHHHHHHHhhcc
Confidence 3456777664443 345567888999999999999999999999999875557899999999999999999988765543
Q ss_pred cCcchhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Q 008621 139 VTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGV 218 (559)
Q Consensus 139 ~~~~~~~~~l~~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi 218 (559)
....++.+.++.++++|..++++|+.+.+.++..+++|++++.++....+.+++.+|+++|+||++|+.+++++|+++|+
T Consensus 85 ~~~~~~~~~~~~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi 164 (510)
T 2cdq_A 85 VSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGV 164 (510)
T ss_dssp TTTGGGCHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 33445566899999999999999998888899999999999999998999999999999999999999999999999999
Q ss_pred ceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCC-CCceeeecCCcchhHHHHHHHH
Q 008621 219 KARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWR-TCAITTLGRGGSDLTATTIGKA 297 (559)
Q Consensus 219 ~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~-~G~~~tlgRgGSD~tAa~lA~~ 297 (559)
+|++++++|++++|+++|+++++.+.++.++.+.+...|++.+.|||++||+|.+ + +|.++||||||||++|+++|.+
T Consensus 165 ~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~-~~~g~ittlgrGgsD~tAa~lA~~ 243 (510)
T 2cdq_A 165 KARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKG-WKTGAVTTLGRGGSDLTATTIGKA 243 (510)
T ss_dssp CEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEE-TTTCCEEECCTTHHHHHHHHHHHH
T ss_pred CEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccC-CCCCceEEeCCCChHHHHHHHHHH
Confidence 9999999999999999999888876666667777765556788999999999998 6 8999999999999999999999
Q ss_pred cCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEec
Q 008621 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377 (559)
Q Consensus 298 L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~ 377 (559)
|+|++|++|||||||||+|||++|+|++|++|||+|+.||+++|++||||+|++||+++|||++|+|+++|+.+||+|.+
T Consensus 244 l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~ 323 (510)
T 2cdq_A 244 LGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITK 323 (510)
T ss_dssp HTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEES
T ss_pred cCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHH
Q 008621 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASEL 457 (559)
Q Consensus 378 ~~~~~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l 457 (559)
...+....|++|+.++++++|+|.+.+|.+.+||++++|+.|+++||+|+||++|+.+|||+++.++....+..+ ..+
T Consensus 324 ~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~sse~sis~~v~~~~~~~~~~~~--~~l 401 (510)
T 2cdq_A 324 TRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQ--QEL 401 (510)
T ss_dssp CCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGSSSCCCH--HHH
T ss_pred cccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeCCCeEEEEEechHhhhhhHHH--HHH
Confidence 654455579999999999999999999999999999999999999999999999999999999987643210011 146
Q ss_pred HHHHHHHhhhceeecccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008621 458 DHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 458 ~~~~~~L~~~~~v~~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
+.+..+++.+..+.+.+++|+||+||.|...+|+++|+|++|+++||||+||+||+|+++|||+|+++|.++|+++||++
T Consensus 402 ~~~~~el~~~~~v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH~~ 481 (510)
T 2cdq_A 402 DHVVEELEKIAVVNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKS 481 (510)
T ss_dssp HHHHHHHTTTSEEEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHHHH
Confidence 66777887777899899999999999966789999999999999999999999999999999999999999999999999
Q ss_pred hccC-ccccccccccCCCCCC
Q 008621 538 FFES-DLANLDCVCGSENNSS 557 (559)
Q Consensus 538 f~~~-~~~~~~~~~~~~~~~~ 557 (559)
||.. +.++....+...+|+.
T Consensus 482 f~~~~~~~~~~~~~~~~~~~~ 502 (510)
T 2cdq_A 482 FFESGDLSELLIQPRLGNGSP 502 (510)
T ss_dssp HHSSCCCCCCCCCCCC-----
T ss_pred HhcCCcceeeeeeccCCCCcc
Confidence 9987 6888888888889885
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-87 Score=717.51 Aligned_cols=427 Identities=30% Similarity=0.479 Sum_probs=363.1
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCc-------ccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~-------~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
.+|+|+|||||||+|+++|++|+++|... +++++|||||||+ +||.|+++++.+..+ .++.+.++.++
T Consensus 2 ~~m~V~KFGGtSva~~e~i~~Va~iI~~~-~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~----~~~~~~~~~i~ 76 (446)
T 3tvi_A 2 LKIVVTKFGGSSLADSNQFKKVKGIIDSD-ANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNG----IPFDDVFKLIS 76 (446)
T ss_dssp --CEEEEECGGGGSSHHHHHHHHHHHTTC-TTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTT----CCCHHHHHHHH
T ss_pred CccEEEEeCccccCCHHHHHHHHHHHHhc-CCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcC----ccHHHHHHHHH
Confidence 46899999999999999999999999874 4678999999995 999999998877543 34678899999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (559)
++|..++++|+.+.+.. ++++++++.+. ..+.+|+|+|+||+||+.||+++| ++.+++++++++.+
T Consensus 77 ~~~~~i~~~L~~~~~~~----~~l~~~~~~l~-----~~~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~ 142 (446)
T 3tvi_A 77 QRYTEIVSELNIDMDIA----YYLEKVKKNIE-----NGASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFD 142 (446)
T ss_dssp HHHHHHHHHHTCCSCHH----HHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBC
T ss_pred HHHHHHHHHhcccHHHH----HHHHHHHHHHh-----cCccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeC
Confidence 99999999998775432 33333333321 126789999999999999999997 58999999985554
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccc
Q 008621 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (559)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (559)
+ +++.+.+.++..+.+ +++.+.|||++||+|.+ ++|.++||||||||++|+++|.+|+|+++++|||||||
T Consensus 143 ~---~~~~~~~~~~~~l~~-----~l~~~~v~Vv~Gf~g~~-~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGv 213 (446)
T 3tvi_A 143 K---SGCFDEKKSYEKIKE-----KVLSCNKAVIPGFYGSS-FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGF 213 (446)
T ss_dssp C-----CBCHHHHHHHHHH-----HTTTCSSEECCCSEEEC-TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred C---CCceehHhhHHHHHH-----HHhcCCeEEeeCceecC-CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 4 445555555544432 35678999999999999 48999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccc--eeeEEe
Q 008621 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA--VLTSIV 390 (559)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~--~It~Is 390 (559)
||+|||++|+|++|+++||+|+.||+++|++||||+|++||+++|||++|+|+++|+.+||+|.+.....+. .|++|+
T Consensus 214 yt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa 293 (446)
T 3tvi_A 214 LMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIA 293 (446)
T ss_dssp BSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEE
T ss_pred CCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999987654433 799999
Q ss_pred eecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhh---h
Q 008621 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEK---I 467 (559)
Q Consensus 391 ~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~---~ 467 (559)
.++|+++|++.+.+|.+.+||++++|+.|++++|+|+||++++.+++|+++++++.. .+..++++++. .
T Consensus 294 ~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~~~~is~~V~~~d~~~--------~~~~~~~el~~~~~~ 365 (446)
T 3tvi_A 294 GKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGVDSVSLVIEDCKLDG--------KCDKIIEEIKKQCNP 365 (446)
T ss_dssp EEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEETTEEEEEEEHHHHTT--------THHHHHHHHHHHSCC
T ss_pred ecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecCCCEEEEEEecchHHH--------HHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999998765421 12334444543 3
Q ss_pred ceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008621 468 AIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542 (559)
Q Consensus 468 ~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 542 (559)
..+++.+++|+||+||. |...||+++|+|++|+++||||+||+||+|+++|||+|+++|.++|+++||++||+..
T Consensus 366 ~~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aLH~~ff~~~ 441 (446)
T 3tvi_A 366 DSIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIYNAFNEGH 441 (446)
T ss_dssp SEEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHHHHHHC---
T ss_pred CcEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHHHHHHhccc
Confidence 56888899999999997 8889999999999999999999999999999999999999999999999999999873
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-86 Score=717.89 Aligned_cols=444 Identities=35% Similarity=0.513 Sum_probs=386.4
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 79 KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
||+|+|+|||||||+|++++++|+++|... .++++||||||||+||.|+++++.+. ...+.+.++.++++|.++
T Consensus 1 mm~~~V~KFGGTSv~~~e~i~~va~ii~~~-~~~~vVVvSA~g~~Td~L~~~~~~~~-----~~~~~~~i~~i~~~~~~i 74 (449)
T 2j0w_A 1 MSEIVVSKFGGTSVADFDAMNRSADIVLSD-ANVRLVVLSASAGITNLLVALAEGLE-----PGERFEKLDAIRNIQFAI 74 (449)
T ss_dssp --CCEEEEECSGGGSSHHHHHHHHHHHTSC-TTEEEEEECCCTTHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEECCccCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCchHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHH
Confidence 477999999999999999999999999764 34789999999999999999876531 123555688999999999
Q ss_pred HHhcCCCHH---HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC
Q 008621 159 VDELGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (559)
Q Consensus 159 ~~~L~~~~~---~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (559)
+++|..+.. .++..+++| +.+.++..+.+ +++.+|+++|+||++|+.+++.+|+++|+++++++++|+ ++|+++
T Consensus 75 ~~~l~~~~~~~~~i~~~~~~l-~~l~~~~~~~~-~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~ 151 (449)
T 2j0w_A 75 LERLRYPNVIREEIERLLENI-TVLAEAAALAT-SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDR 151 (449)
T ss_dssp HTTSSSTHHHHHHHHHHHHHH-HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSC
T ss_pred HHHhcccHHHHHHHHHHHHHH-HHHhhhhccCc-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCC
Confidence 999987643 477888888 55677766655 599999999999999999999999999999999999999 889889
Q ss_pred CCCceeeecch-HHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 236 FTNADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 236 ~~~a~i~~~~~-~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
|+++++..... .+..+.+. .|++. .|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++||||||||+
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~-~l~~~-~IpVv~Gf~g~~-~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~ 228 (449)
T 2j0w_A 152 FGRAEPDIAALAELAALQLL-PRLNE-GLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYT 228 (449)
T ss_dssp TTSCCBCHHHHHHHHHHHTH-HHHHH-SEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEES
T ss_pred CCCccccHhHhHHHHHHHHH-HHhcC-CEEEEeCCeeeC-CCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCc
Confidence 99887754332 22333332 33433 499999999999 4899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEeeecC
Q 008621 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRN 394 (559)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~~~~ 394 (559)
+|||++|+|++|+++||+|+.+|+++|+|||||+|++||+++|||++|+|+++|+.+||+|.+... ....||+|+.++|
T Consensus 229 ~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~~~GT~I~~~~~-~~~~v~gIa~~~~ 307 (449)
T 2j0w_A 229 TDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTE-NPPLFRALALRRN 307 (449)
T ss_dssp SCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCCS-SCCSEEEEEEEEE
T ss_pred CCCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCCCCeeEEecccc-cccccccceeeCC
Confidence 999999999999999999999999999999999999999999999999999999999999998642 3457999999999
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeeccc
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQ 474 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~ 474 (559)
+++|+|.+.+|.+.+||++++|+.|++++|+|+||++|+.+++|++++++.+..... ..++++..+|+.+..+++.+
T Consensus 308 ~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss~~sis~~v~~~~~~~~~~~---~~~~~~~~el~~~~~v~~~~ 384 (449)
T 2j0w_A 308 QTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTSTGDT---LLTQSLLMELSALCRVEVEE 384 (449)
T ss_dssp EEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEETTEEEEEECCCCCSSTTCC---SSCHHHHHHHHHHSCEEEEE
T ss_pred EEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeCCCeEEEEEeccccchhhHH---HHHHHHHHHhccCCeEEEeC
Confidence 999999999999999999999999999999999999999999999998653110000 02445566777667788899
Q ss_pred ceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 475 HRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 475 ~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
++|+||+||. |...+|+++|+|++|++ |||+||+||+|+++|||+|+++|.++|+++||++||.
T Consensus 385 ~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~~~Av~~lh~~f~~ 449 (449)
T 2j0w_A 385 GLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449 (449)
T ss_dssp EEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred CeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 9999999997 88899999999999964 9999999999999999999999999999999999983
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-72 Score=628.82 Aligned_cols=395 Identities=28% Similarity=0.425 Sum_probs=338.4
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
|+++|+|||||||+|++++++++++|.... +.+++||+||||++||.|++++...
T Consensus 1 m~~iViK~GGssl~~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~----------------------- 57 (600)
T 3l76_A 1 MALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQI----------------------- 57 (600)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHH-----------------------
T ss_pred CceEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhh-----------------------
Confidence 568999999999999999999999998753 4678999999999999998754311
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (559)
. ...+++.+|+++++||++|+.+++.+|+++|+++++++++|+++++++.++
T Consensus 58 -----~-----------------------~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~ 109 (600)
T 3l76_A 58 -----S-----------------------PNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHS 109 (600)
T ss_dssp -----C-----------------------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC----
T ss_pred -----c-----------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCC
Confidence 0 123577889999999999999999999999999999999999999988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCC--ceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccC
Q 008621 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC--AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (559)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G--~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta 315 (559)
++++...++..+.+ +++.+.|||++||+|.++ +| .++||||||||++|+++|.+|+|++|+|||||||||++
T Consensus 110 ~~~~~~~~~~~i~~-----ll~~g~IpVv~Gf~g~~~-~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~ 183 (600)
T 3l76_A 110 RARILEIRPDRLEH-----HLREGKVVVVAGFQGISS-VEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTT 183 (600)
T ss_dssp ---CCEEEECCHHH-----HHTTTCEEEEECEEEC-----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSS
T ss_pred CceeccccHHHHHH-----HHhCCCEEEEECCeecCC-CCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCC
Confidence 88877666554443 246789999999999994 89 89999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCC--------Cccceee
Q 008621 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--------MSKAVLT 387 (559)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--------~~~~~It 387 (559)
|||++|+|++|+++||+|+.+|+++|+++|||+|++||+++|||++|+|+++| .+||+|.+... +....|+
T Consensus 184 dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~-~~GT~I~~~~~~~~~~~~~~~~~~v~ 262 (600)
T 3l76_A 184 DPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD-EPGTKVVAPPVQNRSLVGLEIAKAVD 262 (600)
T ss_dssp CTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC-SCCEEEECCCCCSCCCCCCBSSCSCC
T ss_pred CCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC-CCCeEEecCCccccccccccccCcce
Confidence 99999999999999999999999999999999999999999999999999985 79999998653 2345799
Q ss_pred EEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC-----ceeEEEeCCCchhhHHHHHHHHHHHHHHH
Q 008621 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSKLWSRELIQQASELDHVVE 462 (559)
Q Consensus 388 ~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe-----~sIs~~v~~~~~~~~~~~~~~~~l~~~~~ 462 (559)
+|+.++|+++|++. +|.+.+||++++|+.|++++|+||||+++. .+++|+++.+++.. + .. .++++..
T Consensus 263 gi~~~~~~~~i~i~--~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~--a-~~--~l~~~~~ 335 (600)
T 3l76_A 263 GVEYDADQAKVALL--RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNT--A-EA--VTSAIAP 335 (600)
T ss_dssp EEEEECCCEEEEEE--EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHH--H-HH--HHHHHGG
T ss_pred EEEeeCCEEEEEEe--CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHH--H-HH--HHHHHHH
Confidence 99999999999998 688999999999999999999999999876 68999999886532 1 11 2333334
Q ss_pred HHh------hhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 463 ELE------KIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 463 ~L~------~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
+++ ....+.+.+++|+|++||. |...||+++|+|++|++++|||.||++ |+++||++|+++|.++|+++||
T Consensus 336 el~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~ist--Se~~Is~vI~~~d~~~Av~aLh 413 (600)
T 3l76_A 336 ALRSYPEADQEAEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIST--SEVKVSCVIDQRDADRAIAALS 413 (600)
T ss_dssp GGSSSTTCSSSSEEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHH
T ss_pred HhhccccccCcceeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEec--CCCEEEEEEcHHHHHHHHHHHH
Confidence 442 3457888899999999997 888999999999999999999999995 8999999999999999999999
Q ss_pred HHhccC
Q 008621 536 ETFFES 541 (559)
Q Consensus 536 ~~f~~~ 541 (559)
++|+..
T Consensus 414 ~~f~~~ 419 (600)
T 3l76_A 414 NAFGVT 419 (600)
T ss_dssp HHTTCC
T ss_pred Hhhccc
Confidence 999986
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-72 Score=599.12 Aligned_cols=394 Identities=34% Similarity=0.490 Sum_probs=313.3
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
|+++|+|||||||++++++++++++|... .+.++|||+||+|+.||.|++.....
T Consensus 1 m~~iViK~GGssl~~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~----------------------- 57 (421)
T 3ab4_A 1 MALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAV----------------------- 57 (421)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHH-----------------------
T ss_pred CCeEEEEEChhHhCCHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhh-----------------------
Confidence 57899999999999999999999999874 34578999999999999998753210
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (559)
....+++.+|+++++||++|+.+++++|+++|+++.+++++|+++++++.|+
T Consensus 58 ----------------------------~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~ 109 (421)
T 3ab4_A 58 ----------------------------NPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHG 109 (421)
T ss_dssp ----------------------------CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------
T ss_pred ----------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCC
Confidence 0123578899999999999999999999999999999999999899988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCC-CceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCC
Q 008621 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT-CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (559)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~-G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (559)
++++...+...+.+ +++++.|||++||+|.+ ++ |+++||||||||++|+++|.+|+|++|+|||||||||++|
T Consensus 110 ~~~v~~~~~~~i~~-----~l~~g~ipVv~g~~g~~-~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~d 183 (421)
T 3ab4_A 110 NARIVDVTPGRVRE-----ALDEGKICIVAGFQGVN-KETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTAD 183 (421)
T ss_dssp ------CCHHHHHH-----HHHTTCEEEC-------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSC
T ss_pred CeeechhhHHHHHH-----HHhCCCEEEEeCCcCcC-CCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCC
Confidence 88877766655543 34678999999999999 48 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecC-CC--CccceeeEEeeec
Q 008621 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS-RD--MSKAVLTSIVLKR 393 (559)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~-~~--~~~~~It~Is~~~ 393 (559)
||++|++++|++|||+|+.||+++|++++||+|+++|.++|||++|+|+++| ++||+|.+. .. +....|++|+.++
T Consensus 184 Pr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~ 262 (421)
T 3ab4_A 184 PRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDK 262 (421)
T ss_dssp TTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEEC
T ss_pred CCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeC
Confidence 9999999999999999999999999999999999999999999999999999 799999976 32 2445699999999
Q ss_pred CeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe--cC-----ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhh
Q 008621 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SE-----VSLSLTLDPSKLWSRELIQQASELDHVVEELEK 466 (559)
Q Consensus 394 ~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist--Se-----~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~ 466 (559)
|+++|+|.+ +.+.+|+++++|+.|+++||+|+||++ ++ .+++|+++.++... ..+ .++++..++.
T Consensus 263 ~~~~i~v~~--~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~--a~~---~l~~~~~~~~- 334 (421)
T 3ab4_A 263 SEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRR--AME---ILKKLQVQGN- 334 (421)
T ss_dssp SEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHH--HHH---HHHHHHTTTT-
T ss_pred CEEEEEEec--cCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHH--HHH---HHHHHHHHcC-
Confidence 999999996 778899999999999999999999963 43 58999999876432 111 2333333333
Q ss_pred hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008621 467 IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 467 ~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 541 (559)
...+.+.+++|+|++||. |...||+++|+|++|+++||||.||+. |+.+||++|+++|.++|+++||++|+..
T Consensus 335 ~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~--Se~~is~vV~~~d~~~Av~~Lh~~f~~~ 408 (421)
T 3ab4_A 335 WTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIST--SEIRISVLIREDDLDAAARALHEQFQLG 408 (421)
T ss_dssp CSEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEE--ETTEEEEEEEGGGHHHHHHHHHHHTTCC
T ss_pred CceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEc--CCCeEEEEEeHHHHHHHHHHHHHHHhcC
Confidence 356888899999999997 888999999999999999999999985 8999999999999999999999999975
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=256.46 Aligned_cols=205 Identities=18% Similarity=0.221 Sum_probs=160.7
Q ss_pred ceEEEEeCccccC--CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLA--SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (559)
Q Consensus 81 ~~~V~KFGGsSl~--~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (559)
+++|+|||||++. +++.++++++.|.... +.++|+|+|| |.+++.++++
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~~i~~l~~~g~~vvlV~gg-G~~~~~~~~~-------------------------- 53 (226)
T 2j4j_A 1 MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGG-GSTARRYIKL-------------------------- 53 (226)
T ss_dssp CEEEEEECTHHHHTCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHHH--------------------------
T ss_pred CeEEEEeccccccCCCHHHHHHHHHHHHHHHhCCCeEEEEECc-chHhchhHHH--------------------------
Confidence 4689999999999 8999999999998742 3455666654 5565554332
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC
Q 008621 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (559)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (559)
+++++. ++...|.+.++|+.+++.|++.+|+++|+++ +
T Consensus 54 --~~~~g~-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~------------ 91 (226)
T 2j4j_A 54 --AREIGI-------------------------GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH---V------------ 91 (226)
T ss_dssp --HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC---C------------
T ss_pred --HHHhCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC---C------------
Confidence 233332 2345677888999999999999999999854 1
Q ss_pred CCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCC
Q 008621 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (559)
Q Consensus 237 ~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (559)
..++..+. .+++.+.|||++| | + + .++||++|+++|.+|+|++++|||||||||++|
T Consensus 92 ------~~~~~~i~-----~ll~~g~ipVi~g--g-~-~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~d 148 (226)
T 2j4j_A 92 ------PQSLEEFI-----QDWSHGKVVVTGG--F-Q-P--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKD 148 (226)
T ss_dssp ------CSSHHHHH-----HHHTTSSBEEECC--C-S-T--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSC
T ss_pred ------cCCHHHHH-----HHHHCCCEEEEcC--C-C-C--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCC
Confidence 12333332 2357899999998 3 2 2 355999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHc-CCC------cchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEec
Q 008621 317 PNIHPHAKPVPYLTFDEAAELAYF-GAQ------VLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~-Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
|+.+|++++|++++|+|+.+++.. |++ ++||+++.+|.++|+|++|.|+++|+ ..||+|.+
T Consensus 149 P~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 149 PRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp TTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred CCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 999999999999999999999654 666 99999999999999999999988774 46899864
|
| >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=255.49 Aligned_cols=215 Identities=21% Similarity=0.295 Sum_probs=165.3
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 80 ~~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
++++|.||||+++. +.+.++++++.|.... +.++|+|+|+ |...+.+.
T Consensus 7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~Gg-G~~~~g~~---------------------- 63 (239)
T 1ybd_A 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGG-GNIFRGVS---------------------- 63 (239)
T ss_dssp CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHH----------------------
T ss_pred CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-cHHHhchh----------------------
Confidence 57899999999998 4689999999998753 2345556554 42211110
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
+..++.+ ++..|.+.++|+.+++.++..+|++.|+++.++++.+.+.
T Consensus 64 --------~~~~~~~-------------------------~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~ 110 (239)
T 1ybd_A 64 --------AQAGSMD-------------------------RATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQ 110 (239)
T ss_dssp --------HHHTTSC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSS
T ss_pred --------HHHcCCC-------------------------CccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccc
Confidence 1223322 2334566778999999999999999999999999877533
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
+.. +| .+ . ... .+++.|.|||++||.|. .+++||++|+++|.+|+|++++||||||
T Consensus 111 ~~~-~~-------~~-~----~~~-~ll~~g~ipVv~g~~g~----------~~~~~D~~Aa~lA~~l~Ad~liilTdVd 166 (239)
T 1ybd_A 111 IAE-TY-------AR-P----KAI-QYLEEGKVVIFAAGTGN----------PFFTTDTAAALRGAEMNCDVMLKATNVD 166 (239)
T ss_dssp SCE-EC-------CH-H----HHH-HHHHTTCEEEEESTTSS----------TTCCHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred ccc-ch-------hH-H----HHH-HHHhCCcEEEEECCccC----------CCCCcHHHHHHHHHhcCCCEEEEeeCCC
Confidence 221 11 11 1 122 24578999999986442 1356999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEec
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
|||++||+.+|+|++|++++|+|+.++ |+++|||+++++|.++|+|++|.|+++|+ ..||+|.+
T Consensus 167 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 167 GVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp SCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred ccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 999999999999999999999998874 88999999999999999999999998874 46888863
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=255.75 Aligned_cols=216 Identities=21% Similarity=0.266 Sum_probs=160.7
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 80 ~~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
++++|+||||+++. +.+.++++++.|.... +.++|+|+|+ |.+.+.+.
T Consensus 8 ~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGg-G~~~~~~~---------------------- 64 (247)
T 2a1f_A 8 YKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGG-GNLFRGAK---------------------- 64 (247)
T ss_dssp CSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCCHH----------------------
T ss_pred ccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-ChHhcchh----------------------
Confidence 67899999999999 5689999999998753 2344555554 55543321
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
+.+++. +++..|.+.++|+++++.++..+|++.|+++.++++.+.+.
T Consensus 65 --------~~~~g~-------------------------~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~ 111 (247)
T 2a1f_A 65 --------LAKAGM-------------------------NRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNG 111 (247)
T ss_dssp --------HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred --------HHHcCC-------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccc
Confidence 112222 23344667788999999999999999999999999877532
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
+.+ .| ...+ +. .+++.+.|||++|+. |. .++++|++|+++|.+|+|++++||||||
T Consensus 112 ~~~-~~--------~~~~----~~-~ll~~g~ipVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~liilTDVd 167 (247)
T 2a1f_A 112 ICD-TY--------NWSE----AI-KMLREKRVVIFSAGT------GN----PFFTTDSTACLRGIEIEADVVLKATKVD 167 (247)
T ss_dssp TSE-EC--------CHHH----HH-HHHHTTCEEEEESTT------SC----SSCCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred ccc-hh--------hHHH----HH-HHHhCCCEEEEeCCc------CC----CCCCcHHHHHHHHHhCCCCEEEEEeCCC
Confidence 211 11 1122 22 345789999999843 22 2456999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEecC
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS 378 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (559)
|||++||+.+|++++|++++|+|+.++ |+++|||+++.+|.+.|+|++|.|+++|+ ..||+|...
T Consensus 168 Gvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 168 GVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp SCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred cccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 999999999999999999999999874 89999999999999999999999998763 579998764
|
| >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=255.79 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=164.8
Q ss_pred CcceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHH
Q 008621 79 KQLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~-------~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~ 149 (559)
..+++|+||||+++.+ .+.++++++.|.... +.++|+|+|| |...+.+.
T Consensus 11 ~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~Gg-G~~~~~~~--------------------- 68 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-GNIFRGHL--------------------- 68 (255)
T ss_dssp BCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCHHH---------------------
T ss_pred cCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECc-hHHHhhhH---------------------
Confidence 3467999999999995 789999999998743 3456777776 55544331
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHH-cCCceEEecccce
Q 008621 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNK-IGVKARQYDAFDI 228 (559)
Q Consensus 150 ~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~-~Gi~a~~l~~~~~ 228 (559)
++.++.+.. +....+++. ..+++.||+.+|++ .|+++.++++.+.
T Consensus 69 ---------~~~~g~~~~----------------------~~~~~~~~~---~~~~~~ll~~~l~~~~Gi~a~~l~~~~~ 114 (255)
T 2jjx_A 69 ---------AEEWGIDRV----------------------EADNIGTLG---TIINSLMLRGVLTSKTNKEVRVMTSIPF 114 (255)
T ss_dssp ---------HHHTTCCHH----------------------HHHHHHHHH---HHHHHHHHHHHHHHHCSSCEEEEESSCC
T ss_pred ---------HHHcCCCCC----------------------ChHHHhHHH---HHHHHHHHHHHHHhhcCCceEEecHHHc
Confidence 112232210 011123333 36899989999999 9999999999886
Q ss_pred EEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEee-
Q 008621 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK- 307 (559)
Q Consensus 229 ~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~T- 307 (559)
+++++ ..+... +. .+++.|.|||++| | + .++.++ +|++|+++|.+|+|++++|||
T Consensus 115 ~~v~~---------~~~~~~----~~-~lL~~g~IpVi~g--g-~-g~~~vt------tD~~Aa~lA~~l~Ad~liilT~ 170 (255)
T 2jjx_A 115 NAVAE---------PYIRLR----AV-HHLDNGYIVIFGG--G-N-GQPFVT------TDYPSVQRAIEMNSDAILVAKQ 170 (255)
T ss_dssp CSSSE---------ECCHHH----HH-HHHHTTCEEEEES--T-T-SCSSCC------SHHHHHHHHHHHTCSEEEEEES
T ss_pred CcccC---------cccHHH----HH-HHHhCCcEEEEeC--C-C-CCCccc------hHHHHHHHHHhcCCCEEEEEeC
Confidence 43322 112222 22 2457899999998 3 2 123332 699999999999999999999
Q ss_pred CCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEecC
Q 008621 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS 378 (559)
Q Consensus 308 DV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (559)
||||||++||+++|++++|++|+|+|+.++ |.++|||.|++++.+.|+|++|.|+++|+ ..||+|.++
T Consensus 171 DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 171 GVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp SCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred CcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 999999999999999999999999988875 99999999999999999999999999984 689999874
|
| >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=254.99 Aligned_cols=234 Identities=18% Similarity=0.258 Sum_probs=178.3
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
|+++|+|||||++.+++.++++++.|... ...+++|||||+|+.||.|++....... ..
T Consensus 2 m~~~ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~-------~~------------ 62 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVK-------KK------------ 62 (258)
T ss_dssp CCCEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCC-------EE------------
T ss_pred CccEEEEEChhHhCChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcc-------ee------------
Confidence 56799999999999999999999999764 2356799999999999999875321100 00
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (559)
++++ ..+....+.+ ..+++.+|+.+++ .|++.|+++.++++.+.+++++.+.
T Consensus 63 -----------------------~glr---~t~~~~l~~~~~~l~~~~n~~l~~-~l~~~G~~a~~l~~~~~~~~~~~~~ 115 (258)
T 1gs5_A 63 -----------------------NGLR---VTPADQIDIITGALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVTQL 115 (258)
T ss_dssp -----------------------TTEE---CBCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEEEC
T ss_pred -----------------------CCEe---eCCHHHHHHHHHHHhccchHHHHH-HHHHCCCCeEEEeecCCCEEEEEEc
Confidence 0000 0011111111 2346689998886 5799999999999999888887532
Q ss_pred C----C-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 237 T----N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 237 ~----~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
. . +++...+...+.. +++++.|||++|| |.+ .+|++++++ +|++|+.+|.+|+|+ +++||||||
T Consensus 116 ~~d~~~~g~~~~~~~~~i~~-----ll~~g~ipVi~~~-g~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad-li~ltdV~G 184 (258)
T 1gs5_A 116 DEELGHVGLAQPGSPKLINS-----LLENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGAD-LILLSDVSG 184 (258)
T ss_dssp CGGGBSBEEEEECCCHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCE-EEEEESSSS
T ss_pred CCCCCCcCceeEECHHHHHH-----HHHCCCEEEEeCC-cCC-CCCcEEEec---HHHHHHHHHHHhCCc-EEEEeCCCc
Confidence 2 1 2344445544432 3578999999998 777 589999996 999999999999999 999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCC-----CcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
||++| +++|++++|+|+.+++..|. ++.|+.|++++.+.++|++|.|+++|+ ..||+|.
T Consensus 185 v~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 185 ILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp CBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred eECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 99986 57899999999999987655 677788999999999999999988763 5688885
|
| >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=256.33 Aligned_cols=240 Identities=20% Similarity=0.267 Sum_probs=184.3
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
++++|+||||+++.+++.++++++.|.... ....+|||+++|..++.+++...
T Consensus 25 ~k~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~-------------------------- 78 (299)
T 2ap9_A 25 GKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLG-------------------------- 78 (299)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC--------------------------
Confidence 467999999999999999999999988753 23345555567777777765321
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (559)
.+. ++.+++ +..++...|.+ ++.|+ ++.. +..+|++.|++++++++.+.+++++..+
T Consensus 79 -----~~~-----------~~~~g~---R~t~~~~l~~~~~~~~G~-l~~~-l~~~L~~~g~~av~lt~~d~~~~~~~~~ 137 (299)
T 2ap9_A 79 -----IEG-----------DFKGGF---RVTTPEVLDVARMVLFGQ-VGRE-LVNLINAHGPYAVGITGEDAQLFTAVRR 137 (299)
T ss_dssp -----CCC-----------CCSSSS---CCBCHHHHHHHHHHHHHT-HHHH-HHHHHTTSSSCEEEEETTGGGCEEEEEC
T ss_pred -----Ccc-----------cccCCc---ccCCHHHHHHHHHHHhhH-HHHH-HHHHHHhCCCCceEechhHCCEEEEEec
Confidence 100 001111 22345555554 34687 5666 6889999999999999999888876543
Q ss_pred C------------CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEE
Q 008621 237 T------------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (559)
Q Consensus 237 ~------------~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~ 304 (559)
+ .+++...+...+.+ +++.|.|||++|| |.+ ..|+.++++ +|++|+++|.+|+|++++
T Consensus 138 ~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVv~~v-~~~-~~G~~~~l~---~D~~Aa~lA~~l~Ad~li 207 (299)
T 2ap9_A 138 SVTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVSTL-APD-ADGVVHNIN---ADTAAAAVAEALGAEKLL 207 (299)
T ss_dssp CBCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEESE-EEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEE
T ss_pred ccccccccCCCCcceeEEEecHHHHHH-----HHhCCCeEEECCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 2 12333344443332 4578999999997 877 479999996 999999999999999999
Q ss_pred EeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CC
Q 008621 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------AP 371 (559)
Q Consensus 305 i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~ 371 (559)
|||||||||++||+ ++++|++|+|+|+.+++.+|...|+|| ++..+.+.|+| ++|.|+++|+ +.
T Consensus 208 ilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~ 284 (299)
T 2ap9_A 208 MLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGT 284 (299)
T ss_dssp EEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCC
T ss_pred EEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCC
Confidence 99999999999998 589999999999999999999999997 88899999999 9999998875 46
Q ss_pred CeEEecCC
Q 008621 372 GTLIRRSR 379 (559)
Q Consensus 372 GT~I~~~~ 379 (559)
||+|.+..
T Consensus 285 GT~i~~~~ 292 (299)
T 2ap9_A 285 GTKVVRGE 292 (299)
T ss_dssp SEEEECCC
T ss_pred cEEEecCC
Confidence 99998754
|
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-29 Score=246.10 Aligned_cols=213 Identities=22% Similarity=0.289 Sum_probs=160.3
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 80 ~~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
++++|.||||+++. |++.++++++.|.... +.++|+|+|+ |.+.+.+...
T Consensus 7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gG-G~~~~g~~~~-------------------- 65 (240)
T 4a7w_A 7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGG-GNIIRGVSAA-------------------- 65 (240)
T ss_dssp CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTTC--------------------------
T ss_pred CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-cHHHhHhHHH--------------------
Confidence 56899999999998 7899999999998753 3455666655 5555332210
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceE
Q 008621 151 VKDLHHRTVDELG-IDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (559)
Q Consensus 151 i~~~~~~~~~~L~-~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (559)
.+| . .....|++-...+.+|+.+++.+|+++|++++.+++.+++
T Consensus 66 ----------~~G~~-------------------------~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~ 110 (240)
T 4a7w_A 66 ----------QGGII-------------------------RRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIK 110 (240)
T ss_dssp -------------CC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCT
T ss_pred ----------hcCCC-------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcC
Confidence 011 1 1112233322456789999999999999999999988863
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
..+ + ..+...+. .+++++.|||++|+.|. . .+.+|++|+++|.+|+|+.+++||||
T Consensus 111 ~~~-------~--~~~~~~i~-----~lL~~g~ipVi~~~~g~------~----~~~~D~~Aa~lA~~l~Ad~li~lTdV 166 (240)
T 4a7w_A 111 EIC-------E--SYIYRKAI-----RHLEKGRVVIFGAGTGN------P----FFTTDTAATLRAIEIGSDLIIKATKV 166 (240)
T ss_dssp TTS-------E--ECCHHHHH-----HHHHTTCEEEEESTTSC------T----TSCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ccc-------C--cCcHHHHH-----HHHHCCCEEEEeCCCCC------C----CCChHHHHHHHHHHcCCCEEEEccCC
Confidence 211 1 12333332 23578999999996442 1 13499999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC----------CCCeEE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN----------APGTLI 375 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I 375 (559)
||||++||+++|+|+++++++|+|+.++ |.++|||+|+.+|.++|+|++|.|+++|+ +.||.|
T Consensus 167 dGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 167 DGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp SSEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred CceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 9999999999999999999999998774 89999999999999999999999999874 458876
|
| >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=247.32 Aligned_cols=218 Identities=20% Similarity=0.233 Sum_probs=167.3
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 80 ~~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
++++|+||||+++. +.+.++++++.|.... ....+|||++.|...+.+.
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~----------------------- 63 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP----------------------- 63 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-----------------------
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-----------------------
Confidence 46899999999999 4689999999998753 2334555554465544431
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
+++++.+ ++..|.+..+++.+++.++..+|.+.|+++.++++.+.+.+
T Consensus 64 -------~~~lg~~-------------------------~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~ 111 (252)
T 1z9d_A 64 -------AADAGMD-------------------------RVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNV 111 (252)
T ss_dssp -------HHHHTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTT
T ss_pred -------HHHcCCC-------------------------CCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccc
Confidence 0112222 22234556678899999999999999999999988765322
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEee-CCc
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DVD 310 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~T-DV~ 310 (559)
++ .| .+ . .+ ..+++.|.|||++|+. |. .++++|++|+.+|.+|+|++|+||| |||
T Consensus 112 ~~-~~-------~~-~----~~-~~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilT~DVd 167 (252)
T 1z9d_A 112 AE-PY-------IR-G----RA-LRHLEKNRIVVFGAGI------GS----PYFSTDTTAALRAAEIEADAILMAKNGVD 167 (252)
T ss_dssp BE-EC-------CH-H----HH-HHHHHTTCEEEEESTT------SC----TTCCHHHHHHHHHHHTTCSEEEEEESSCC
T ss_pred cC-cc-------hH-H----HH-HHHHhCCCEEEEeCCc------CC----CCCChHHHHHHHHHhcCCCEEEEecCCCC
Confidence 11 11 11 2 22 2346789999999843 31 3567999999999999999999999 999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEecCC
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRSR 379 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~~ 379 (559)
|||++||+.+|++++|++|+|+|+.+ +|+++||++++.+|.+.|+|++|.|+++|+ ..||+|.+..
T Consensus 168 Gvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 242 (252)
T 1z9d_A 168 GVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV 242 (252)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred eeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence 99999999999999999999999876 588999999999999999999999998885 6799998764
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=242.10 Aligned_cols=215 Identities=21% Similarity=0.278 Sum_probs=163.9
Q ss_pred cceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~-------~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
++++|.|+||+++.+ .+.++++++.|.... +.++++|+|+ |.+..... .
T Consensus 9 ~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gG-G~~~~~~~-~-------------------- 66 (243)
T 3ek6_A 9 YRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGG-GNIFRGAG-L-------------------- 66 (243)
T ss_dssp CSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECS-TTTSCSTT-T--------------------
T ss_pred CcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHHHH-H--------------------
Confidence 467999999999986 689999999998753 3455666664 44321110 0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
..++.+ ....|++.....++|+.++..+|++.|++++.+++.+++.
T Consensus 67 ---------~~~g~~-------------------------~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~ 112 (243)
T 3ek6_A 67 ---------AASGMD-------------------------RVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKIND 112 (243)
T ss_dssp ---------SCSSSC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTT
T ss_pred ---------HHcCCC-------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCc
Confidence 012221 2223444344568999999999999999999999988643
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
+++ + .+...+ . .++++|.|||++|+.| . .++++|++|+++|.+|+|+.|++|||||
T Consensus 113 v~~-~--------~~~~~~----~-~lL~~g~IpVv~~~~g------~----~~~~~D~~Aa~lA~~l~Ad~li~lTdVd 168 (243)
T 3ek6_A 113 VCE-D--------FIRRRA----I-RHLEKGRIAIFAAGTG------N----PFFTTDSGAALRAIEIGADLLLKATKVD 168 (243)
T ss_dssp TBE-E--------CCHHHH----H-HHHHTTCEEEEESTTS------S----TTCCHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred ccC-c--------CCHHHH----H-HHHHCCcEEEEECCCC------C----CcCChHHHHHHHHHHcCCCEEEEEeCCC
Confidence 322 1 122222 2 2457899999999543 2 1356999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEec
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
|||++||+++|+|+++++++|+|+.+ .|.++||++|++.|.++|+|++|.|+++|+ ..||+|.+
T Consensus 169 Gvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 169 GVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred ccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 99999999999999999999999877 488999999999999999999999998874 57999976
|
| >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=256.59 Aligned_cols=228 Identities=20% Similarity=0.296 Sum_probs=141.4
Q ss_pred cceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 80 QLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~------~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
.+++|.||||+++.+ .+.++++++.|.... +.++|+|+|++ +.--+.
T Consensus 4 ~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg--i~~g~~----------------------- 58 (367)
T 2j5v_A 4 SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA--IAAGRE----------------------- 58 (367)
T ss_dssp CCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH--HHHHHH-----------------------
T ss_pred CCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH--HHHHHH-----------------------
Confidence 367999999999998 589999999988753 33555555543 211111
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
.|+.+. +..+....+++++.||...+.++..+|+++|+++. ++ ++
T Consensus 59 ---------~lg~~~--------------------~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~-----qv-ll 103 (367)
T 2j5v_A 59 ---------HLGYPE--------------------LPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVG-----QM-LL 103 (367)
T ss_dssp ---------HHTSCC--------------------CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEE-----EE-EE
T ss_pred ---------HcCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceE-----EE-EE
Confidence 122111 12234567778899999999999999999999985 33 55
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceee--ecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~t--lgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+.++|.+. ..+.+..+.+. .|++.|.|||+.+ +|.+.+ +.+|+||++|+++|.+|+|+.++|||||
T Consensus 104 t~~d~~~~----~r~~n~~~~i~-~LL~~g~IPIv~e-------nd~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDV 171 (367)
T 2j5v_A 104 TRADMEDR----ERFLNARDTLR-ALLDNNVVPVINE-------NDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQ 171 (367)
T ss_dssp CGGGGSSH----HHHHHHHHHHH-HHHHTTCEEEEEE-------CTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC
T ss_pred ecccccCc----eEEEhHHHHHH-HHHHCCCEEEECC-------CCceecccccCCCHHHHHHHHHHhcCCCEEEEeecC
Confidence 66655432 12222223343 3568899999953 233444 7799999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchH--hHHHHHHhCCCCEEEecCCCCC---------CC
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------AP 371 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~--~Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~ 371 (559)
||||++||+.+|++++|+++++ +|+.+++. +|.++||| +++.+|.++|+|++|.|+++|+ ..
T Consensus 172 dGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~ 251 (367)
T 2j5v_A 172 KGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISV 251 (367)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCC
T ss_pred CceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCC
Confidence 9999999999999999999999 99999976 48899999 5899999999999999999986 78
Q ss_pred CeEEecCC
Q 008621 372 GTLIRRSR 379 (559)
Q Consensus 372 GT~I~~~~ 379 (559)
||+|.+..
T Consensus 252 GT~i~~~~ 259 (367)
T 2j5v_A 252 GTLFHAQA 259 (367)
T ss_dssp SEEECCCS
T ss_pred cEEEEcCc
Confidence 99998753
|
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-28 Score=244.54 Aligned_cols=215 Identities=21% Similarity=0.326 Sum_probs=157.5
Q ss_pred cceEEEEeCccccC------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 80 QLTCVMKFGGSSLA------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 80 ~~~~V~KFGGsSl~------~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
.+++|+|+||+++. +.+.++++++.|.... ....|||||+.|.+...+...
T Consensus 50 ~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~---------------------- 107 (281)
T 3nwy_A 50 YSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQ---------------------- 107 (281)
T ss_dssp CSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTT----------------------
T ss_pred CcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHH----------------------
Confidence 56799999999998 5789999999998753 233444444335444332100
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (559)
.++. .....|++..+++++|+.++...|++.|++++.+.+.+.+.++
T Consensus 108 --------~~gl-------------------------~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~ 154 (281)
T 3nwy_A 108 --------QLGM-------------------------ERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVA 154 (281)
T ss_dssp --------TTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGGGS
T ss_pred --------hcCC-------------------------CccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccccc
Confidence 0111 2223455656688999999999999999999888876654333
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccc
Q 008621 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (559)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (559)
+.|. + .+... ++++|.|||+.|+.| . .++++|++|+++|.+|+||.+++|||||||
T Consensus 155 -~~~~-------~-----~~~l~-lL~~g~IpVv~g~~g------~----~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGV 210 (281)
T 3nwy_A 155 -EPYL-------P-----LRAVR-HLEKGRVVIFGAGMG------L----PYFSTDTTAAQRALEIGADVVLMAKAVDGV 210 (281)
T ss_dssp -EECC-------H-----HHHHH-HHHTTCEEEEESTTS------S----TTCCHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred -cccc-------h-----HHHHH-HHHcCCeEEEECCCC------C----CCCCHHHHHHHHHHHcCCCEEEEeeccCcc
Confidence 1221 1 12222 457899999998533 2 136799999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
|++||+.+|+|++|++++|+|+.+ .|.+++|++|+..|.+.|+|++|.|+++|+ ..||+|.
T Consensus 211 y~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 211 FAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp BCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred ccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999755 588999999999999999999999998874 5788885
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=238.66 Aligned_cols=207 Identities=20% Similarity=0.248 Sum_probs=158.2
Q ss_pred cceEEEEeCccccC----CHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (559)
Q Consensus 80 ~~~~V~KFGGsSl~----~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 155 (559)
.+++|+||||+++. +.+.++++++.|....+...+|+|++.|..++.++..
T Consensus 19 ~k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~g~~vViV~GgG~~~~~~~~~------------------------- 73 (244)
T 2brx_A 19 HMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEV------------------------- 73 (244)
T ss_dssp CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHHH-------------------------
T ss_pred ccEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhCCCeEEEEECccHHHhchHHH-------------------------
Confidence 46799999999999 7799999999998753233455555445555554321
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC
Q 008621 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (559)
Q Consensus 156 ~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (559)
+++++. +....+.+.+.|+.+++.|++.+|+++|+++ +
T Consensus 74 ---~~~~gl-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~-------- 111 (244)
T 2brx_A 74 ---AEKFNS-------------------------SETFKDFIGIQITRANAMLLIAALREKAYPV------V-------- 111 (244)
T ss_dssp ---HHTTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C--------
T ss_pred ---HHHcCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C--------
Confidence 222332 3355667777799999999998999999754 0
Q ss_pred CCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccC
Q 008621 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (559)
Q Consensus 236 ~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta 315 (559)
..+...+. .+++.+.|||++| |. + .+.+|++|+++|.+|+|++++|||||||||++
T Consensus 112 -------~~~~~~i~-----~lL~~g~IpVi~g--g~--~--------~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~ 167 (244)
T 2brx_A 112 -------VEDFWEAW-----KAVQLKKIPVMGG--TH--P--------GHTTDAVAALLAEFLKADLLVVITNVDGVYTA 167 (244)
T ss_dssp -------BCSHHHHH-----HHHHTTCBCEECC--CS--T--------TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSS
T ss_pred -------cCCHHHHH-----HHHhCCCEEEEcC--CC--C--------CCCchHHHHHHHHHcCCCEEEEEeCCCccCCC
Confidence 01222222 2457899999988 31 1 23499999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHc-CC-----CcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEec
Q 008621 316 DPNIHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
||+.+|++++|++++|+|+.+++.. |. .++++.|++++.+.++|++|.|+++|+ ..||+|.+
T Consensus 168 dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 168 DPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 244 (244)
T ss_dssp CTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred CCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence 9999999999999999999999654 55 889999999999999999999877653 46888853
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=241.14 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=162.6
Q ss_pred eEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 82 ~~V~KFGGsSl~~--~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
++|+||||| +.+ .+.++++++.|........+|+||+.|...+.++++.
T Consensus 41 ~iVIKiGGs-l~~~~~~~l~~l~~~I~~l~~G~~vVlV~GGg~~~~~~~~~~---------------------------- 91 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVG---------------------------- 91 (276)
T ss_dssp EEEEEECHH-HHTTTHHHHHHHHHHHHHHTTTCEEEEEECCTHHHHHHHHHH----------------------------
T ss_pred eEEEEEChh-hcCCCHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhcc----------------------------
Confidence 899999999 888 6899999999987543334444454444444333210
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCc
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (559)
.+.+. +....+.+...++.++..+++.+++..|++++.+.
T Consensus 92 ~~~gl-------------------------~~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~--------------- 131 (276)
T 2ogx_A 92 LDLGL-------------------------PVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHP--------------- 131 (276)
T ss_dssp HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHH---------------
T ss_pred CcCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc---------------
Confidence 01221 23455666666789999999888888888653211
Q ss_pred eeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCce-eeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCC
Q 008621 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI-TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (559)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~-~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (559)
...+.+. .+++.|.|||++||.+.+. .+.+ ..+.+++||++|+++|.+|+|+.+++||||||||++||+
T Consensus 132 --------~~~~~i~-~lL~~g~IpVi~~~~~~~~-~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~ 201 (276)
T 2ogx_A 132 --------TVADQLA-IHLSATRAVVGSAFPPYHH-HEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPN 201 (276)
T ss_dssp --------HHHHHHH-HHHHHSSEEEEESSCTTGG-GCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTT
T ss_pred --------ChHHHHH-HHHhCCCEEEEcCCccccc-ccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCC
Confidence 0112232 2457789999999977652 1221 233567799999999999999999999999999999999
Q ss_pred --CCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHH--hCCCCEEEecCCCC---------CCCCeEEecC
Q 008621 319 --IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAR--EGDIPVRVKNSYNP---------NAPGTLIRRS 378 (559)
Q Consensus 319 --~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~--~~~Ipv~I~n~~~p---------~~~GT~I~~~ 378 (559)
.+|++++|++++++|+.+++ |.++|||++..++. +.++|++|.|+++| +..||+|.+.
T Consensus 202 ~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 202 GPDRGQARFLPETSATDLAKSE--GPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp STTGGGCCEESEEEHHHHHTSC--SCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred ccCCCCCeEcceeCHHHHHHHh--CcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 89999999999999999887 89999999999988 66889999999988 5689999865
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=230.59 Aligned_cols=202 Identities=21% Similarity=0.290 Sum_probs=155.3
Q ss_pred ceEEEEeCccccCC-HHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLAS-AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~-~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
+++|+||||+++.+ .+.++++++.|.... +.++|+|+|+ |..++.++...
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~i~~l~~g~~vvlV~gg-G~~~~~~~~~~--------------------------- 52 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGG-GKLAREYIKSA--------------------------- 52 (219)
T ss_dssp CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECC-HHHHHHHHHHH---------------------------
T ss_pred CeEEEEeChhhhCChHHHHHHHHHHHHHHcCCCEEEEEECc-chHhcchHHHH---------------------------
Confidence 46899999999999 899999999998643 3455666655 77887765432
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
++++. ++...|.+.+.++.+++.|++.+|+.. +. +
T Consensus 53 -~~~g~-------------------------~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~-------~----------- 87 (219)
T 2ij9_A 53 -RELGA-------------------------SETFCDYIGIAATRLNAMLLISAIPSA-AK-------K----------- 87 (219)
T ss_dssp -HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHCTTB-CS-------S-----------
T ss_pred -HHcCC-------------------------CccchHHHHHHHHHHHHHHHHHHHHHh-cC-------C-----------
Confidence 22332 345567777778899999998876553 11 0
Q ss_pred ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCC
Q 008621 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (559)
Q Consensus 239 a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (559)
...+...+. .+++.+.|||++| |. . .|++|++|+.+|.+|+|+.+++||||||||++||+
T Consensus 88 ---~~~~~~~i~-----~ll~~g~ipVi~~--g~------~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~ 147 (219)
T 2ij9_A 88 ---VPVDFMEAE-----ELSKLYRVVVMGG--TF------P----GHTTDATAALLAEFIKADVFINATNVDGVYSADPK 147 (219)
T ss_dssp ---CCSSHHHHH-----HHHTTCSEEEECC--CS------S----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCS
T ss_pred ---CcCCHHHHH-----HHHHCCCEEEEeC--CC------C----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCC
Confidence 112333332 2467899999988 31 1 23599999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHc-CC-----CcchHhHHHHHHhCCCCEEEecCCCC---------CCCCeEEe
Q 008621 319 IHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIR 376 (559)
Q Consensus 319 ~v~~a~~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~ 376 (559)
.+|++++|++++|+|+.+++.. |+ .++|+.|++++.+.++|++|.|+ +| +..||+|.
T Consensus 148 ~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 148 SDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp SSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred CCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 9999999999999999999765 55 89999999999999999999998 65 35688874
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=233.63 Aligned_cols=215 Identities=21% Similarity=0.247 Sum_probs=152.7
Q ss_pred cceEEEEeCccccCC-------HHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~-------~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
++++|.||||+++.+ .+.++++++.|........+|+|++.|...+.+.
T Consensus 24 ~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~------------------------ 79 (256)
T 2va1_A 24 KQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSI------------------------ 79 (256)
T ss_dssp CSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHH------------------------
T ss_pred cCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccch------------------------
Confidence 467999999999994 5789999998887533334555554466655542
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (559)
++.++.+. ...|....++..+++.++..+|++.|++++.+.+.+.
T Consensus 80 ------~~~~g~~~-------------------------~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~---- 124 (256)
T 2va1_A 80 ------AKELDMDR-------------------------NLADNMGMMATIINGLALENALNHLNVNTIVLSAIKC---- 124 (256)
T ss_dssp ------HHHTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCC----
T ss_pred ------HHHcCCCC-------------------------CchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeec----
Confidence 11223221 1122333445588899889999999999988876542
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeC-Ccc
Q 008621 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDG 311 (559)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TD-V~G 311 (559)
+.+.+.. .+ .... .|++.|.|||++|+. |. .++++|++|+++|.+|+|++++|||| |||
T Consensus 125 -~~~~~~~---~~-----~~~~-~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdG 184 (256)
T 2va1_A 125 -DKLVHES---SA-----NNIK-KAIEKEQVMIFVAGT------GF----PYFTTDSCAAIRAAETESSIILMGKNGVDG 184 (256)
T ss_dssp -TTTCEEC---CH-----HHHH-HHHHTTCEEEEESTT------SS----SSCCHHHHHHHHHHHHTCSEEEEEESSCCS
T ss_pred -ccccchh---hH-----HHHH-HHHhCCcEEEEECCC------CC----CCCChhHHHHHHHHhCCCCEEEEeecccCe
Confidence 2332211 11 1222 356789999998832 32 35779999999999999999999999 999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
||++||+.+|++++|++++++|+.++ |.++||++++..|.+.|+|++|.|+++|+ ..||+|.
T Consensus 185 Vy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 185 VYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp BCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred EEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99999999999999999999999888 56888999999999999999999998773 4588875
|
| >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-27 Score=241.44 Aligned_cols=238 Identities=16% Similarity=0.257 Sum_probs=174.6
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
++++|+||||+++.+++.++++++.|.... ....+|||+++|...+.+++...
T Consensus 36 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~-------------------------- 89 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLN-------------------------- 89 (298)
T ss_dssp TCEEEEEECTHHHHCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT--------------------------
T ss_pred CCEEEEEECchhhCChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcC--------------------------
Confidence 367999999999999999999999887653 23334445556666676654321
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC-
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~- 235 (559)
.+. ++.++++ ..++...|.+ ++.|+. +. .++..|++.|++++++++.+.+++++.+
T Consensus 90 -----~~~-----------~~~~g~R---~t~~~~l~~~~~~~~G~~-n~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 148 (298)
T 2rd5_A 90 -----IPA-----------EFRDGLR---VTDATTMEIVSMVLVGKV-NK-NLVSLINAAGATAVGLSGHDGRLLTARPV 148 (298)
T ss_dssp -----CCC-----------CEETTEE---CBCHHHHHHHHHHHHHTH-HH-HHHHHHHHTTSCEEEEETTGGGCEEEEEC
T ss_pred -----CCc-----------cccCCcc---cCCHHHHHHHHHHHhchH-HH-HHHHHHHhCCCCccccChHHCCEEEEEeC
Confidence 100 0011111 2234444443 225754 54 4778899999999999998877777654
Q ss_pred -----CCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 236 -----FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 236 -----~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
++. +++...+...+++ ++++|.|||++|+ +.+ ..|+.++++ +|++|+++|.+|+|++++|||||
T Consensus 149 ~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~v-~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTdV 218 (298)
T 2rd5_A 149 PNSAQLGFVGEVARVDPSVLRP-----LVDYGYIPVIASV-AAD-DSGQAYNIN---ADTVAGELAAALGAEKLILLTDV 218 (298)
T ss_dssp TTHHHHBSEEEEEEECGGGHHH-----HHHTTCEEEEESE-EEC-TTSCEEEEC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CccccCCcceEEEEECHHHHHH-----HHhCCCEEEEcCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 333 2443444443432 3568999999996 777 478899896 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (559)
||||++||+ | +++|++|+++|+.+++..| ...|+|| ++..+.++|+| ++|.|+..|+ ..||+
T Consensus 219 dGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~ 295 (298)
T 2rd5_A 219 AGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTM 295 (298)
T ss_dssp SSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEE
T ss_pred cCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceE
Confidence 999999998 4 9999999999999998864 4679986 88889999999 9999987764 35788
Q ss_pred Eec
Q 008621 375 IRR 377 (559)
Q Consensus 375 I~~ 377 (559)
|.+
T Consensus 296 i~~ 298 (298)
T 2rd5_A 296 ITG 298 (298)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
|
| >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-27 Score=237.68 Aligned_cols=235 Identities=23% Similarity=0.282 Sum_probs=171.9
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
++++|+||||+++.+++.++++++.|.... ....+|||+++|..++.+++...
T Consensus 21 ~~~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~-------------------------- 74 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLG-------------------------- 74 (282)
T ss_dssp TCEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC--------------------------
Confidence 367999999999999999999999888753 23345555557777777664321
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec--
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~-- 234 (559)
.+. ++.+++ +..++...|.+ +..|+. +. .+...|++.|++++.+++.+.+++++.
T Consensus 75 -----~~~-----------~~~~g~---r~t~~~~l~~~~~~~~G~~-~~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 133 (282)
T 2bty_A 75 -----IEP-----------VFKNGH---RVTDEKTMEIVEMVLVGKI-NK-EIVMNLNLHGGRAVGICGKDSKLIVAEKE 133 (282)
T ss_dssp -----CCC-----------CBSSSS---BCBCHHHHHHHHHHHHHTH-HH-HHHHHHHTTTCCEEEEETTGGGSEEEEEC
T ss_pred -----CCc-----------cccCCc---ccCCHHHHHHHHHHHhhHH-HH-HHHHHHHhCCCCceecChhhCCEEEEecC
Confidence 000 001111 12234444432 225765 54 477899999999999998877666654
Q ss_pred ----CCCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 235 ----~~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+++. +++...+...+.+ +++.|.|||++|| +.+ ..|+.++++ +|++|+++|.+|+|++++|||||
T Consensus 134 ~~~~d~g~~g~v~~~~~~~i~~-----ll~~g~IpVi~~v-~~~-~~G~~~~~~---~D~~Aa~lA~~l~Ad~liilTDV 203 (282)
T 2bty_A 134 TKHGDIGYVGKVKKVNPEILHA-----LIENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDV 203 (282)
T ss_dssp CTTCCCBSBEEEEEECTHHHHH-----HHHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CcccCCCcceEEEEecHHHHHH-----HHHCCCEEEECCC-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 3443 3444455443332 3568999999997 777 478888886 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchH--hHHHHHHhCCCC-EEEecCCCCC----------CCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHP--QSMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga--~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (559)
||||++ | ++|++++|+|+.+++..|. ..|.| +++..+.++|+| ++|.|+..|+ ..||+
T Consensus 204 dGvy~~-~------~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~ 276 (282)
T 2bty_A 204 DGVLKD-G------KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTM 276 (282)
T ss_dssp SSCEET-T------EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEE
T ss_pred CCeecC-c------hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceE
Confidence 999997 3 8999999999999998754 45765 589999999998 9999987764 47999
Q ss_pred EecC
Q 008621 375 IRRS 378 (559)
Q Consensus 375 I~~~ 378 (559)
|.+.
T Consensus 277 i~~~ 280 (282)
T 2bty_A 277 IKEL 280 (282)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 9764
|
| >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=232.60 Aligned_cols=215 Identities=18% Similarity=0.208 Sum_probs=153.8
Q ss_pred ceEEEEeCccccC-----CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHH
Q 008621 81 LTCVMKFGGSSLA-----SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (559)
Q Consensus 81 ~~~V~KFGGsSl~-----~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (559)
+++|+||||+++. +.+.++++++.|.... ..++|+|+|+ | +...+.+
T Consensus 2 k~iViKlGGs~l~~~~~~~~~~~~~~~~~i~~l~~~~~vVlVhgG-g-~~~~~~~------------------------- 54 (251)
T 2ako_A 2 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSA-A-ISAGHTK------------------------- 54 (251)
T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECC-H-HHHHHHH-------------------------
T ss_pred CEEEEEeCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECC-H-HHHHHHH-------------------------
Confidence 5699999999999 8899999999988752 2344455443 3 3222211
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
++.+. ......+.+.+.|+....+++..+|+++|+++..+ .++.+
T Consensus 55 -------~g~~~----------------------~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i------~~~~~ 99 (251)
T 2ako_A 55 -------LDIDR----------------------KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGK 99 (251)
T ss_dssp -------CCCCS----------------------SSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTG
T ss_pred -------hCCcc----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE------Eeccc
Confidence 12111 01223467888999999999999999999997632 34444
Q ss_pred CCCCceeeecchHHHHH-HHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccc
Q 008621 235 DFTNADILEATYPAVAK-RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (559)
Q Consensus 235 ~~~~a~i~~~~~~~i~~-~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (559)
+|... + ..+.. .....+++.|.|||++|+-+.. .++. .+|++|++|+++|.+|+|++++|||||||||
T Consensus 100 ~~~~~-~-----~~~~~~~~i~~ll~~g~ipVi~~~d~v~--~~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy 168 (251)
T 2ako_A 100 DFDSR-K-----ATKHAKNAIDMMINLGILPIINENDATA--IEEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFY 168 (251)
T ss_dssp GGGCH-H-----HHHHHHHHHHHHHHTTCEEEEEECTTTC--CHHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCB
T ss_pred hhcCc-c-----eEehHHHHHHHHHHCCCEEEEeCCCcee--ecce---eecCchHHHHHHHHhcCCCEEEEEeCCCcee
Confidence 44221 1 11211 2333456889999998752221 1222 4678999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHH--HHHHHHH-----cCCCcchH--hHHHHHHhCCCCEEEecCCCC
Q 008621 314 TCDPNIHPHAKPVPYLTFD--EAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNP 368 (559)
Q Consensus 314 taDP~~v~~a~~i~~ls~~--Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p 368 (559)
++||+++|++++|+++|++ |+.+++. +|...|+| +++.++.++|+|++|.|+++|
T Consensus 169 ~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~ 232 (251)
T 2ako_A 169 DKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDL 232 (251)
T ss_dssp SSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred eCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence 9999999999999999999 9999976 67786765 599999999999999998776
|
| >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-26 Score=235.54 Aligned_cols=238 Identities=19% Similarity=0.297 Sum_probs=175.0
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
++++|+||||+++.+++.++++++.|.... +.++|||+|+ |...+.+++.
T Consensus 49 ~k~iVIKlGGs~l~~~~~~~~l~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~--------------------------- 100 (321)
T 2v5h_A 49 GRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGG-GPEINAWLGR--------------------------- 100 (321)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHHH---------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHH---------------------------
Confidence 467999999999999999999998887643 3355555554 5555555432
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec-
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (559)
++.+. ++.+|+ +..++...|.+ ++.|+. +.. +...|+.+|++++.+++.+.+++++.
T Consensus 101 ----~g~~~-----------~~~~g~---Rvt~~~~l~~~~~~~~G~i-n~~-l~~~L~~~g~~a~gl~~~~a~~l~a~~ 160 (321)
T 2v5h_A 101 ----VGIEP-----------QFHNGL---RVTDADTMEVVEMVLVGRV-NKD-IVSRINTTGGRAVGFCGTDGRLVLARP 160 (321)
T ss_dssp ----TTCCC-----------CBSSSS---BCBCHHHHHHHHHHHHHTH-HHH-HHHHHHHHTCCEEEECTTGGGSEEEEE
T ss_pred ----cCCCc-----------cccCCc---ccCCHHHHHHHHHHHhChH-HHH-HHHHHHhCCCCeeeeChhhccEEEeec
Confidence 11111 001111 11234555554 335744 654 77789999999999998876667664
Q ss_pred ----CCCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 235 ----~~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+++. .++...+...+.+ +++.|.|||+++ ++.+ ..|+..+++ +|++|+++|.+|+|++|+|+|||
T Consensus 161 ~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTDV 230 (321)
T 2v5h_A 161 HDQEGIGFVGEVNSVNSEVIEP-----LLERGYIPVISS-VAAD-ENGQSFNIN---ADTVAGEIAAALNAEKLILLTDT 230 (321)
T ss_dssp CSSCSSBSBEEEEEECGGGTHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEEESS
T ss_pred CCCccccccceeEEecHHHHHH-----HHHCCCeEEEeC-ceEC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEEeeCC
Confidence 4554 3444444443332 357899999996 5777 478776555 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--hHHHHHHhCCCC-EEEecCCCCC----------CCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (559)
||||++||+ ++++|++|+++|+.+++..| +++|+| +++..+.++|+| ++|.|+..|+ ..||+
T Consensus 231 dGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~ 307 (321)
T 2v5h_A 231 RGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTM 307 (321)
T ss_dssp SSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEE
T ss_pred CceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceE
Confidence 999999998 69999999999999998864 678998 488999999999 9999987664 57999
Q ss_pred EecC
Q 008621 375 IRRS 378 (559)
Q Consensus 375 I~~~ 378 (559)
|.+.
T Consensus 308 I~~~ 311 (321)
T 2v5h_A 308 IVGS 311 (321)
T ss_dssp EECC
T ss_pred EECC
Confidence 9865
|
| >3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=212.62 Aligned_cols=148 Identities=32% Similarity=0.488 Sum_probs=129.6
Q ss_pred CccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHH
Q 008621 381 MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHV 460 (559)
Q Consensus 381 ~~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~ 460 (559)
+++..|++|+.++|+++|++.+.+|.+.+|+++++|+.|+++||+|+||++++.+++|++++++ .+.++
T Consensus 4 ~~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~s~~~Isf~v~~~~-----------~~~~i 72 (157)
T 3mah_A 4 TEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDK-----------NLPDI 72 (157)
T ss_dssp ---CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEECCSSEEEEEESCCT-----------THHHH
T ss_pred CCCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEecCCEEEEEECChH-----------HHHHH
Confidence 4456799999999999999999999999999999999999999999999999999999999764 13345
Q ss_pred HHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008621 461 VEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 461 ~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
+++++....+++.+++++|++||. |...||+++|+|++|+ +|||.||+||+|+.+|+|+|+++|.++|+++||++|+
T Consensus 73 l~~l~~~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh~~f~ 150 (157)
T 3mah_A 73 VRALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLF 150 (157)
T ss_dssp HHHHTTTEEEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHHHHHH
T ss_pred HHHHhccCeEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHHHHHh
Confidence 567776678888999999999997 8889999999999999 9999999999999999999999999999999999999
Q ss_pred cC
Q 008621 540 ES 541 (559)
Q Consensus 540 ~~ 541 (559)
..
T Consensus 151 ~~ 152 (157)
T 3mah_A 151 NS 152 (157)
T ss_dssp C-
T ss_pred cc
Confidence 76
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=225.15 Aligned_cols=216 Identities=17% Similarity=0.240 Sum_probs=153.2
Q ss_pred eEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 82 ~~V~KFGGsSl~~--~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
++|.||||+++.+ .+.++++++.|....+...+|+|++.|...+.+.+++
T Consensus 38 ~iVIKlGGs~l~~~~~~~~~~la~~I~~l~~~~~vVlVhGGg~~~~~~~~~~---------------------------- 89 (270)
T 2ogx_B 38 ATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIA---------------------------- 89 (270)
T ss_dssp EEEEEECTTTTGGGCHHHHHHHHHHHHHHTTTCEEEEEECCCHHHHHHHHHH----------------------------
T ss_pred eEEEEechHHhCCCCHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHH----------------------------
Confidence 8999999999997 5899999999987543244444454454443332211
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCc
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (559)
.+++.+.. ........+.| ++..++...|+++|++. +|..++
T Consensus 90 ~~~g~~~~-----------------------~~~~~~~~a~G--~~~l~~~~~l~~~G~~~----------vt~~d~--- 131 (270)
T 2ogx_B 90 AGLGLPAG-----------------------VLAQLGSSVAD--QNAAMLGQLLAKHGIPV----------VGGAGL--- 131 (270)
T ss_dssp HHTTCCHH-----------------------HHHHHHHHHHH--HHHHHHHHHHGGGTCCB----------CCSSTT---
T ss_pred HhcCCChH-----------------------HHHHHHHHHHH--HHHHHHHHHHHhcCCce----------ecHhhH---
Confidence 11222110 11112234445 45666788888899872 222222
Q ss_pred eeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecC---CcchhHHHHHHHHcCcCcEEEeeCCcccccCC
Q 008621 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (559)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgR---gGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (559)
..+. .+++.+.|||++||.|.+...+.+ +.|+ +++|++|+++|.+|+|+.+++||||||||++|
T Consensus 132 -------~~i~-----~lL~~g~ipVi~g~~g~~~~~~~~-~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~d 198 (270)
T 2ogx_B 132 -------SAVP-----LSLAEVNAVVFSGMPPYKLWMRPA-AEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTAN 198 (270)
T ss_dssp -------CHHH-----HHCTTCCEEEEECSCTTGGGCCCC-SSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSC
T ss_pred -------HHHH-----HHHhCCCEEEEeCCcccccccccc-ccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCC
Confidence 1122 246789999999998765212222 3443 88999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHh--CCCCEEEecCCCCC---------CCCeEEec
Q 008621 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARE--GDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~--~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
|+.+|++++|++++|+|+.+++..| .++|+.....+.. .++|++|.|+++|+ ..||+|.+
T Consensus 199 P~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 199 PKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp SSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred CCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 9999999999999999999998755 6888877766665 57899999998885 67999975
|
| >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=225.95 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCC--Ccee
Q 008621 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT--CAIT 280 (559)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~--G~~~ 280 (559)
.+++. +.++|+++|++++++++.+.++++. +++...+...+.. +++++.|||++||++.+ .+ |+++
T Consensus 89 ~ln~~-l~~~L~~~G~~a~~l~g~~~~~~~~-----g~v~~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~~~g~~~ 156 (269)
T 3ll9_A 89 KLNSH-VCDALLAEGIPAVSMQPSAFIRAHA-----GRISHADISLIRS-----YLEEGMVPVVYGDVVLD-SDRRLKFS 156 (269)
T ss_dssp HHHHH-HHHHHHHTTCCEEECCGGGTEEEET-----TEEEEECCHHHHH-----HHHTTCEEEEECEEEEB-SCTTTSEE
T ss_pred HHHHH-HHHHHHHCCCcEEEEcchHcCeEec-----CeeeeecHHHHHH-----HHHCCCEEEECCCEEec-ccccCcce
Confidence 67775 6788999999999999999876652 4555555544433 35789999999999988 47 8888
Q ss_pred eecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHH-----cCCCcchHh--HHHHH
Q 008621 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-----FGAQVLHPQ--SMRPA 353 (559)
Q Consensus 281 tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~-----~Ga~vlhp~--a~~~a 353 (559)
+++ +|++|+++|.+|+|+++++||||||||++||+++|++++|++++++|+.++.. ++...|.|| ++..+
T Consensus 157 ~~~---~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a 233 (269)
T 3ll9_A 157 VIS---GDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLL 233 (269)
T ss_dssp EEC---HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHH
T ss_pred ecc---hHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHH
Confidence 887 99999999999999999999999999999999999999999999999987753 345678886 66677
Q ss_pred HhCCCCEEEecCCCCC---------CC-CeEEe
Q 008621 354 REGDIPVRVKNSYNPN---------AP-GTLIR 376 (559)
Q Consensus 354 ~~~~Ipv~I~n~~~p~---------~~-GT~I~ 376 (559)
.+.|+|++|.|...|+ .. ||+|.
T Consensus 234 ~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 234 AEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp HHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 7899999999987774 45 88886
|
| >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-26 Score=234.62 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=156.9
Q ss_pred cceEEEEeCccccCCHH--------HHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHH
Q 008621 80 QLTCVMKFGGSSLASAE--------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~--------~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~ 149 (559)
++++|+||||+++.+++ .++++++.|.... +.+++||||++|...+.+++...
T Consensus 23 ~~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~~----------------- 85 (286)
T 3d40_A 23 PDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHD----------------- 85 (286)
T ss_dssp CSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC--------------------------
T ss_pred CCEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHcC-----------------
Confidence 34799999999999864 8999998888753 22257777999988887754211
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceE
Q 008621 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (559)
Q Consensus 150 ~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (559)
.+ .+.. +..++.|+......+..+|+++|+++..+.+.+..
T Consensus 86 --------------~~---------------------~~~~----~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~ 126 (286)
T 3d40_A 86 --------------ST---------------------HAFS----LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMC 126 (286)
T ss_dssp --------------------------------------CCT----THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTE
T ss_pred --------------CC---------------------cccc----hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCC
Confidence 00 0111 12344454455667889999999999999988875
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHH-cCcCcEEEeeC
Q 008621 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA-LGLQEIQVWKD 308 (559)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~-L~A~~l~i~TD 308 (559)
+ |.+ + +.......+.. +++.|.|||++||++.+ .+|+. .++++|++|+++|.+ |+|++|+||||
T Consensus 127 ~-t~d--g---~~~~~~~~i~~-----lL~~g~IpVi~gd~~~~-~~g~~---~~~~~D~~Aa~lA~~~l~Ad~LiilTD 191 (286)
T 3d40_A 127 T-LRN--G---IPQLRSEVLRD-----VLDHGALPVLAGDALFD-EHGKL---WAFSSDRVPEVLLPMVEGRLRVVTLTD 191 (286)
T ss_dssp E-EET--T---EEEECCSHHHH-----HHHTTCEEEEECEEEEB-TTSCE---EEECGGGHHHHTTTTCCSCEEEEEEES
T ss_pred c-ccC--C---eEEehHHHHHH-----HHHCcCEEEEcCCeEEc-CCCCE---EeeCHHHHHHHHHHhhCCCCEEEEecC
Confidence 4 443 1 32333332332 35789999999988887 46775 455699999999999 99999999999
Q ss_pred CcccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchH--hHHHHHHhCCCCEEEecCCCCCCCCeEE
Q 008621 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHP--QSMRPAREGDIPVRVKNSYNPNAPGTLI 375 (559)
Q Consensus 309 V~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~--------~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~~~GT~I 375 (559)
|||||++||+ ++++|++|++.|+.+|.. ++..+|+| +++..+.+.|+|++|.|+++|+....++
T Consensus 192 VdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~ 265 (286)
T 3d40_A 192 VDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLT 265 (286)
T ss_dssp SSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGG
T ss_pred CCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHh
Confidence 9999999999 899999999998777632 46689999 5899999999999999998876443333
|
| >4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=216.67 Aligned_cols=166 Identities=25% Similarity=0.379 Sum_probs=129.9
Q ss_pred CCCeEEecCCCCccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC-------ceeEEEeCC
Q 008621 370 APGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-------VSLSLTLDP 442 (559)
Q Consensus 370 ~~GT~I~~~~~~~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe-------~sIs~~v~~ 442 (559)
+.+++|.....|+++.||||++++|+++|+|.+ |.+.||+++++|+.|+++||+||||+|+. ..++|+++.
T Consensus 10 ~s~~iv~e~~~mE~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 10 HSSGLVPRGNHMEDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp ----------CCCSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred ccCceEeCCCccccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 456777777778888999999999999999984 89999999999999999999999998653 357899987
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEE
Q 008621 443 SKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLI 521 (559)
Q Consensus 443 ~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~v 521 (559)
++.... .+ .++.+..++. ...+.+.+++++||+||. |...||+++|+|++|+++||||+||++ |+++||++
T Consensus 88 ~d~~~~--~~---~l~~~~~~~~-~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIst--SEi~IS~v 159 (200)
T 4go7_X 88 DVGPAA--VE---KLDSLRNEIG-FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--SEIRISVL 159 (200)
T ss_dssp GGHHHH--HH---HHHTTHHHHC-CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEE--CSSEEEEE
T ss_pred hhHHHH--HH---HHHHHHhhhc-eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEc--cCCEEEEE
Confidence 764321 11 2333333332 356888899999999998 888999999999999999999999995 99999999
Q ss_pred EecccHHHHHHHHHHHhccCcccc
Q 008621 522 VNDDEAEQCVRALHETFFESDLAN 545 (559)
Q Consensus 522 V~~~d~~kAv~~LH~~f~~~~~~~ 545 (559)
|+++|.++|+++||++|+++...+
T Consensus 160 V~~~d~~~Av~aLH~~F~L~~~~~ 183 (200)
T 4go7_X 160 CRDTELDKAVVALHEAFGLGGDEE 183 (200)
T ss_dssp EEGGGHHHHHHHHHHHHTC----C
T ss_pred EeHHHHHHHHHHHHHHhCCCCCce
Confidence 999999999999999999875433
|
| >3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=227.62 Aligned_cols=233 Identities=16% Similarity=0.227 Sum_probs=168.4
Q ss_pred CcCCCcceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 75 DESEKQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 75 ~~~~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
..+.+++++|.||||+++.+. ++++++.|.... +.++|+|+|++..++..|.+++
T Consensus 31 ~~~~m~k~iVIKiGGs~l~~~--~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg--------------------- 87 (279)
T 3l86_A 31 GRGSMKDIIVIKIGGVASQQL--SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQ--------------------- 87 (279)
T ss_dssp ----CCCEEEEEECTTGGGSC--CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT---------------------
T ss_pred ccccCCceEEEEEChHHHHhH--HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcC---------------------
Confidence 344455689999999999873 566666666532 3466777776555665554432
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH--hhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~il--s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
.++ ++.+|+++. +++..+.+- ..| .++ ..+.+.|++.|+++..+++.+.++
T Consensus 88 -----------~~~-----------~~~~G~Rvt---d~~~l~~v~~~l~G-~ln-~~i~~~L~~~G~~a~~l~g~dg~l 140 (279)
T 3l86_A 88 -----------VPV-----------KKINGLRVT---SKDDMVLVSHALLD-LVG-KNLQEKLRQAGVSCQQLKSDIKHV 140 (279)
T ss_dssp -----------CCC-----------CEETTEECB---CHHHHHHHHHHHHH-TTH-HHHHHHHHHTTCCEEECSGGGGGT
T ss_pred -----------CCC-----------ccCCCcccC---cHHHHHHHHHHHHH-HHH-HHHHHHHHhCCCCEEEEecCcCCE
Confidence 111 011122221 233333331 123 223 447788999999999999999989
Q ss_pred EEecCC-----CC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEE
Q 008621 231 ITTDDF-----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (559)
Q Consensus 231 it~~~~-----~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~ 304 (559)
+|.+++ ++ +++..++...++. +++.|.|||++| ++.+ .+|+.++++ +|++|+.+|.+|+|++|+
T Consensus 141 lta~~~~~~d~g~vG~i~~v~~~~i~~-----lL~~g~IPVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~Li 210 (279)
T 3l86_A 141 VAADYLDKDTYGYVGDVTHINKRVIEE-----FLENRQIPILAS-LGYS-KEGDMLNIN---ADYLATAVAVALAADKLI 210 (279)
T ss_dssp EEEEESCHHHHBSBEEEEEECHHHHHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEE
T ss_pred EEeeccCccccCcccccchhhHHHHHH-----HHhCCcEEEECC-cEEC-CCCCEeecC---HHHHHHHHHHHcCCCEEE
Confidence 998744 44 5666666554443 357899999999 8888 479999887 999999999999999999
Q ss_pred EeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--hHHHHHHhCCCC-EEEecCCCCCCCCeEEec
Q 008621 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPNAPGTLIRR 377 (559)
Q Consensus 305 i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~~~GT~I~~ 377 (559)
|||||||||+ ++++|++++++|+.+++..| ...|.| +++..|.+.|+| ++|.|+|.. ||+|..
T Consensus 211 ilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~---GT~i~~ 278 (279)
T 3l86_A 211 LMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLT---GTLITA 278 (279)
T ss_dssp EECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEESSSSC---SEEEEC
T ss_pred EEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEeccCCC---CeEEec
Confidence 9999999994 47899999999999998754 467888 588999999999 999999985 999975
|
| >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=224.96 Aligned_cols=235 Identities=20% Similarity=0.304 Sum_probs=172.7
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
++++|.||||+++.+++.++.+++.|.... +.++|+|+|+ |...+.+++..
T Consensus 26 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~~-------------------------- 78 (300)
T 2buf_A 26 GKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGG-GPQIGDLLKRL-------------------------- 78 (300)
T ss_dssp TCEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCeEEEEECC-cHHHHHHHHHc--------------------------
Confidence 467999999999999988999998887653 3455556555 65555554321
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (559)
+.+. ++.+|++ ..++...|.+ ++.|+. ...+...|+++|++++.+++.+.+++++.+
T Consensus 79 -----g~~~-----------~~~~g~r---vt~~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~ 137 (300)
T 2buf_A 79 -----SIES-----------HFIDGMR---VTDAATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKK 137 (300)
T ss_dssp -----TCCC-----------CBSSSSB---CBCHHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEE
T ss_pred -----CCCc-----------cccCCee---cCCHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeee
Confidence 1110 0111111 1234555554 335765 566888899999999999988777776542
Q ss_pred -----------------CCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHH
Q 008621 236 -----------------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA 297 (559)
Q Consensus 236 -----------------~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~ 297 (559)
++. .++...+...+. .+++.|.|||+++ ++.+ ..|+.++++ +|++|+++|.+
T Consensus 138 ~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~-----~lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~ 207 (300)
T 2buf_A 138 LTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLN-----MLVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEA 207 (300)
T ss_dssp CCCCCC--------CCCCBSBEEEEEECHHHHH-----HHHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHH
T ss_pred ccccccchhhcccccccCCcceeEEEECHHHHH-----HHHHCCCEEEEcC-ceeC-CCCCEEEEC---HHHHHHHHHHH
Confidence 322 233334443332 2457899999996 5777 478888886 99999999999
Q ss_pred cCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--hHHHHHHhCCCC-EEEecCCCCC---
Q 008621 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPN--- 369 (559)
Q Consensus 298 L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~--- 369 (559)
|+|+.+++||||||||++ ++++|++++++|+.+++..| .++|+| +++..+.++|+| ++|.|+..|+
T Consensus 208 l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll 281 (300)
T 2buf_A 208 LKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVL 281 (300)
T ss_dssp HTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHH
T ss_pred cCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHH
Confidence 999999999999999997 38899999999999998875 588999 588999999999 9999977664
Q ss_pred -------CCCeEEecC
Q 008621 370 -------APGTLIRRS 378 (559)
Q Consensus 370 -------~~GT~I~~~ 378 (559)
..||+|.+.
T Consensus 282 ~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 282 LEIFTDSGVGTLISNR 297 (300)
T ss_dssp HHHSSTTCCSEEEECC
T ss_pred HHHhcCCCCceEEEeC
Confidence 579999864
|
| >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-25 Score=227.94 Aligned_cols=239 Identities=15% Similarity=0.118 Sum_probs=163.8
Q ss_pred CcceEEEEeCccccC--CH--------HHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhh
Q 008621 79 KQLTCVMKFGGSSLA--SA--------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCID 146 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~--~~--------~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~ 146 (559)
|++++|+||||+++. +. +.++++++.|.... +.++|+|+|++..+++.|.+.....
T Consensus 1 m~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~------------ 68 (314)
T 1e19_A 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQ------------ 68 (314)
T ss_dssp -CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH------------
T ss_pred CCCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcc------------
Confidence 356899999999999 54 58888998888653 3467788887777888776643210
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH--hhhH---HHHHHHHHHHHHHcCCce-
Q 008621 147 ELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGE---CMSTRIFAAYLNKIGVKA- 220 (559)
Q Consensus 147 ~l~~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~il--s~GE---~lsa~ll~~~L~~~Gi~a- 220 (559)
++ + .+. ++..+.+. ..|+ .+ ..++...|++.|+++
T Consensus 69 -------------------------------~~-~---~~~---~~~l~~~~a~~~G~i~~~l-~~~l~~~l~~~gi~a~ 109 (314)
T 1e19_A 69 -------------------------------AT-Y---GIP---AQPMDVAGAMSQGWIGYMI-QQALKNELRKRGMEKK 109 (314)
T ss_dssp -------------------------------HH-H---CCC---CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCCC
T ss_pred -------------------------------cc-C---CCC---hhHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCCchh
Confidence 00 0 011 11223332 2243 55 566778899999987
Q ss_pred -------EEecccce----------EEEEecC-------C------------CCce-----eeecchHHHHHHHhhchhc
Q 008621 221 -------RQYDAFDI----------GFITTDD-------F------------TNAD-----ILEATYPAVAKRLHGDWIT 259 (559)
Q Consensus 221 -------~~l~~~~~----------~iit~~~-------~------------~~a~-----i~~~~~~~i~~~l~~~l~~ 259 (559)
+.+++.|. ++++.++ + .+.. +...+...+ ..|++
T Consensus 110 ~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i-----~~lL~ 184 (314)
T 1e19_A 110 VVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETI-----KKLVE 184 (314)
T ss_dssp EEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHH-----HHHHH
T ss_pred hhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHH-----HHHHH
Confidence 56676662 3343110 1 1110 222233322 23467
Q ss_pred CCcEEEEcCCCcccC-CCCceeeecC---CcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHH
Q 008621 260 DLAIPIVTGFLGKAW-RTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA 335 (559)
Q Consensus 260 ~~~ipVv~Gfig~~~-~~G~~~tlgR---gGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~ 335 (559)
.|.|||++||.|... .+.+. ++|+ +++|++|+++|.+|+|++|++||||||||++|| .|++++|++++++|+.
T Consensus 185 ~g~IpV~~Gg~giPi~~~~d~-~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~~ 261 (314)
T 1e19_A 185 RGVIVIASGGGGVPVILEDGE-IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELR 261 (314)
T ss_dssp TTCEEECSGGGCEEEEEETTE-EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHH
T ss_pred CCCEEEEeCCCccCeEECCCC-cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHHH
Confidence 899999998644321 01122 5664 889999999999999999999999999999999 4899999999999999
Q ss_pred HHHHcCC---CcchHh---HHHHHHhCCCCEEEec------CCCCCCCCeEEec
Q 008621 336 ELAYFGA---QVLHPQ---SMRPAREGDIPVRVKN------SYNPNAPGTLIRR 377 (559)
Q Consensus 336 eLa~~Ga---~vlhp~---a~~~a~~~~Ipv~I~n------~~~p~~~GT~I~~ 377 (559)
+++..|. ..|+|| |++.+.+.++|++|.| .++. ..||+|.+
T Consensus 262 ~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 262 KYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp HHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred HHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence 9988654 689998 7777888999999987 3333 47999863
|
| >3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=197.71 Aligned_cols=152 Identities=26% Similarity=0.384 Sum_probs=129.2
Q ss_pred ccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec--C-----ceeEEEeCCCchhhHHHHHHH
Q 008621 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--E-----VSLSLTLDPSKLWSRELIQQA 454 (559)
Q Consensus 382 ~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS--e-----~sIs~~v~~~~~~~~~~~~~~ 454 (559)
+++.|++|+.++|+++|+|.+ |.+.+|+++++|+.|+++||+|+||+++ + .+++|+++.++... +.+
T Consensus 3 e~~~V~gIa~~~~~~~Iti~~--~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~--a~~-- 76 (181)
T 3s1t_A 3 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVE-- 76 (181)
T ss_dssp -CCEEEEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHH--HHH--
T ss_pred CCCcEEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHH--HHH--
Confidence 346799999999999999995 8899999999999999999999999863 2 47999999887532 111
Q ss_pred HHHHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHH
Q 008621 455 SELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRA 533 (559)
Q Consensus 455 ~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~ 533 (559)
.++++..++ ....+++.+++|+|++||. |...||+++|+|++|+++||||.||++ |+.+||++|+++|.++|+++
T Consensus 77 -~L~~~~~el-~~~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Ist--Sei~Is~vV~~~d~~~Av~a 152 (181)
T 3s1t_A 77 -KLDSLRNEI-GFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--SEIRISVLCRDTELDKAVVA 152 (181)
T ss_dssp -HHHHTHHHH-CCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE--ETTEEEEEEEGGGHHHHHHH
T ss_pred -HHHHHHHhc-CcceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEc--CCCEEEEEEeHHHHHHHHHH
Confidence 233333444 2467888899999999997 888999999999999999999999995 89999999999999999999
Q ss_pred HHHHhccCcc
Q 008621 534 LHETFFESDL 543 (559)
Q Consensus 534 LH~~f~~~~~ 543 (559)
||++|+..+.
T Consensus 153 LH~~f~l~~~ 162 (181)
T 3s1t_A 153 LHEAFGLGGD 162 (181)
T ss_dssp HHHHHTCCC-
T ss_pred HHHHHcCCCC
Confidence 9999998754
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=207.92 Aligned_cols=224 Identities=15% Similarity=0.173 Sum_probs=150.0
Q ss_pred CcceEEEEeCccccCCH--------HHHHHHHHHHHcCCCCCcE-EEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHH
Q 008621 79 KQLTCVMKFGGSSLASA--------ERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~--------~~~~~va~iI~~~~~~~~v-VVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~ 149 (559)
+|+++|.||||+++.++ +.++++++.|.. +.++| +|+++ |...+.+++.
T Consensus 2 ~~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~--G~~vv~lVhGG-G~~~~~~~~~------------------- 59 (249)
T 3ll5_A 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG--IEDLVCVVHGG-GSFGHIKAME------------------- 59 (249)
T ss_dssp --CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT--CTTEEEEEECC-GGGTHHHHHH-------------------
T ss_pred CceEEEEEECccEEecCcccccchHHHHHHHHHHHhc--CCceEEEEECc-cHHHHHHHHH-------------------
Confidence 36789999999999886 489999999986 55666 67666 6555553321
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceE
Q 008621 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (559)
Q Consensus 150 ~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (559)
++.++.... .+ -.+ .+..+..++ .+|+.++ .+|++.|+++.++++.+++
T Consensus 60 ------------~gi~~~~~~--~d-----~~g--------l~~t~~~~~---~ln~~~v-~~l~~~G~~a~~l~~~~~~ 108 (249)
T 3ll5_A 60 ------------FGLPGPKNP--RS-----SIG--------YSIVHRDME---NLDLMVI-DAMIEMGMRPISVPISALR 108 (249)
T ss_dssp ------------HTCSEECCH--HH-----HHH--------HHHHHHHHH---HHHHHHH-HHHHHTTCCEEECCGGGSC
T ss_pred ------------hCCCcCCCc--cc-----ccc--------HHHHHHHHH---HHHHHHH-HHHHHCCCcEEEEcHHHcc
Confidence 111110000 00 000 111222222 7788877 7899999999999998864
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+ .+++ +...+. .++++|.|||++|+++.+ .+|..++++ +|++|+.+|.+|+|+.+++||||
T Consensus 109 ~-------~g~v---~~~~i~-----~ll~~g~ipVi~~~~~~~-~~~~~~~~~---~D~~Aa~lA~~l~Ad~li~ltdv 169 (249)
T 3ll5_A 109 Y-------DGRF---DYTPLI-----RYIDAGFVPVSYGDVYIK-DEHSYGIYS---GDDIMADMAELLKPDVAVFLTDV 169 (249)
T ss_dssp B-------SSSB---CCHHHH-----HHHHTTCEEEEECEEEEE-ETTEEEEEC---HHHHHHHHHHHHCCSEEEEEESS
T ss_pred c-------ccEE---cHHHHH-----HHHHCCCEEEECCCEEEc-CCCceeeec---HHHHHHHHHHhcCCCEEEEEeCC
Confidence 3 1233 222222 245789999999988766 356665555 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHH--HcCCCcchHh--HHHHH-HhCCCCEEEecCCCCC--------CC-CeEE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELA--YFGAQVLHPQ--SMRPA-REGDIPVRVKNSYNPN--------AP-GTLI 375 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa--~~Ga~vlhp~--a~~~a-~~~~Ipv~I~n~~~p~--------~~-GT~I 375 (559)
||||++||+.+|++++++++. ++...+. .++...|.|| ++..+ .+.|++++|.|..+|+ .. ||+|
T Consensus 170 dGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~l~g~~~~GT~i 248 (249)
T 3ll5_A 170 DGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVI 248 (249)
T ss_dssp SSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCEEEEETTSGGGGGGTTSTTCCSEEE
T ss_pred CccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChhHHHHhCCCCCCCEEe
Confidence 999999999999999999995 2222222 2455678886 45555 8899999999976653 34 7776
|
| >2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=191.43 Aligned_cols=148 Identities=24% Similarity=0.412 Sum_probs=127.1
Q ss_pred ceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-------CceeEEEeCCCchhhHHHHHHHHH
Q 008621 384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWSRELIQQASE 456 (559)
Q Consensus 384 ~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-------e~sIs~~v~~~~~~~~~~~~~~~~ 456 (559)
..|++|+.++++++|++.+ +.+.+|+++++|+.|+++||+|+|++++ +.+++|+++.++.+. +.+ .
T Consensus 5 ~~v~gIa~~~~~a~Itv~g--~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~--a~~---~ 77 (167)
T 2dt9_A 5 KAVTGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQE--ALE---A 77 (167)
T ss_dssp CCEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHH--HHH---H
T ss_pred CceeEEEEeCCEEEEEEec--CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHH--HHH---H
Confidence 4699999999999999996 6788999999999999999999999877 568999998876532 111 3
Q ss_pred HHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 457 LDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 457 l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
++++..++. + .+.+.+++++|++||. |...||+++|+|++|+++||||+||++ |+.+||++|+++|.++|+++||
T Consensus 78 L~~~~~~~~-~-~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~--Se~~is~vv~~~d~~~Av~~Lh 153 (167)
T 2dt9_A 78 LEPVLAEIG-G-EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT--SEVRISVIIPAEYAEAALRAVH 153 (167)
T ss_dssp HHHHHHHHC-C-EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHhC-C-cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc--cCCEEEEEEeHHHHHHHHHHHH
Confidence 455555665 3 7888899999999997 888999999999999999999999985 8999999999999999999999
Q ss_pred HHhccCc
Q 008621 536 ETFFESD 542 (559)
Q Consensus 536 ~~f~~~~ 542 (559)
++|+.+.
T Consensus 154 ~~f~~~~ 160 (167)
T 2dt9_A 154 QAFELDK 160 (167)
T ss_dssp HHTC---
T ss_pred HHHcCCc
Confidence 9999764
|
| >2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=183.15 Aligned_cols=149 Identities=21% Similarity=0.369 Sum_probs=124.6
Q ss_pred ccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-----CceeEEEeCCCchhhHHHHHHHHH
Q 008621 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQQASE 456 (559)
Q Consensus 382 ~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-----e~sIs~~v~~~~~~~~~~~~~~~~ 456 (559)
+...|+||+.++|+++|+|.+ |.+.+|+++++|+.|+++||+|++++++ +.+++|+++.++.+. +.+ .
T Consensus 12 ~~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~--a~~---~ 84 (167)
T 2re1_A 12 ERAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQ--TLE---I 84 (167)
T ss_dssp ---CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHH--HHH---H
T ss_pred cCCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHH--HHH---H
Confidence 445799999999999999997 8899999999999999999999999987 678999999876421 100 1
Q ss_pred HHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 457 LDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 457 l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
++.+..++. ...+...+++++|+++|. |...||+++|+|++|+++||||.+++. |+.+++++|+++|.++|+++||
T Consensus 85 l~~~~~~l~-~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ist--se~~is~vv~~~d~~~av~~Lh 161 (167)
T 2re1_A 85 LSERQDSIG-AASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIST--SEIKVSVLIDEKYMELATRVLH 161 (167)
T ss_dssp HHHSSTTTT-CSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHcC-CceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEc--ccCEEEEEEeHHHHHHHHHHHH
Confidence 222222222 345777889999999997 888999999999999999999999984 9999999999999999999999
Q ss_pred HHhcc
Q 008621 536 ETFFE 540 (559)
Q Consensus 536 ~~f~~ 540 (559)
++|+.
T Consensus 162 ~~f~l 166 (167)
T 2re1_A 162 KAFNL 166 (167)
T ss_dssp HHTTC
T ss_pred HHhcC
Confidence 99985
|
| >2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=184.56 Aligned_cols=146 Identities=25% Similarity=0.388 Sum_probs=123.7
Q ss_pred cceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-------CceeEEEeCCCchhhHHHHHHHH
Q 008621 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWSRELIQQAS 455 (559)
Q Consensus 383 ~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-------e~sIs~~v~~~~~~~~~~~~~~~ 455 (559)
+..|+||+.++|+++|+|.+ +.+.+|+++++|+.|+++||+|++++++ +.+|+|+++.++.+.
T Consensus 3 ~~~V~gIa~~~~~~~Itv~~--~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~-------- 72 (178)
T 2dtj_A 3 EAVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRR-------- 72 (178)
T ss_dssp -CEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHH--------
T ss_pred CCcEEEEEecCCEEEEEEec--CCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHH--------
Confidence 34799999999999999985 5788999999999999999999999877 677999998655321
Q ss_pred HHHHHHHHHhh---hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHH
Q 008621 456 ELDHVVEELEK---IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCV 531 (559)
Q Consensus 456 ~l~~~~~~L~~---~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv 531 (559)
...+++++.. ...+++.+++++|++||. |...||+++|+|++|+++||||.||+ +|+.+|+|+|+++|.++|+
T Consensus 73 -a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV~~~d~~~Av 149 (178)
T 2dtj_A 73 -AMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAA 149 (178)
T ss_dssp -HHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHH
T ss_pred -HHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHH
Confidence 1222332221 345788899999999997 88899999999999999999999998 4899999999999999999
Q ss_pred HHHHHHhccC
Q 008621 532 RALHETFFES 541 (559)
Q Consensus 532 ~~LH~~f~~~ 541 (559)
++||++|+..
T Consensus 150 ~~Lh~~F~l~ 159 (178)
T 2dtj_A 150 RALHEQFQLG 159 (178)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHccC
Confidence 9999999975
|
| >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=209.26 Aligned_cols=234 Identities=18% Similarity=0.139 Sum_probs=166.5
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
++++|+||||+++.+++ ++++++.|.... ....+|+|+++|..++.+++..
T Consensus 43 ~~~iViK~GG~~l~~~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~--------------------------- 94 (456)
T 3d2m_A 43 GTTLVAGIDGRLLEGGT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQ--------------------------- 94 (456)
T ss_dssp TCEEEEEECGGGGTSTH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTT---------------------------
T ss_pred CCEEEEEEChHHhcCch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHC---------------------------
Confidence 46799999999999876 888888887642 2334555666776666654321
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCce----EEecccceEEEEe
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKA----RQYDAFDIGFITT 233 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a----~~l~~~~~~iit~ 233 (559)
+... ++.+|++ ..++...+.+ .+.| .++..+ .+.|+ .|+++ +.+++.+.++++.
T Consensus 95 ----~~~~-----------~~~~g~r---~t~~~~l~~~~~~~G-~~~~~l-~~~l~-~g~~~~~~~~~l~~~~~~~~~~ 153 (456)
T 3d2m_A 95 ----GRTP-----------HYCRGLR---VTDETSLGQAQQFAG-TVRSRF-EAALC-GSVSGFARAPSVPLVSGNFLTA 153 (456)
T ss_dssp ----TCCC-----------CCGGGCC---CBCHHHHHHHHHHHH-HHHHHH-HHHHH-TC--------CCCEECCSCEEE
T ss_pred ----CCCC-----------EeeCCee---cCCHHHHHHHHHHHh-HHHHHH-HHHHh-cccccCCCccceeeccCcEEEE
Confidence 1110 0112221 2245555555 3346 566655 55788 99998 8888888778876
Q ss_pred cCC--------CC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEE
Q 008621 234 DDF--------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (559)
Q Consensus 234 ~~~--------~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~ 304 (559)
... +. +++...+...+. .+++.|.|||++|+ +.+ .+|++++++ +|++|+.+|.+|+|+.|+
T Consensus 154 ~~~~~~~~~d~g~~g~v~~v~~~~i~-----~lL~~g~ipIi~~~-~~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad~li 223 (456)
T 3d2m_A 154 RPIGVIDGTDMEYAGVIRKTDTAALR-----FQLDAGNIVWMPPL-GHS-YGGKTFNLD---MVQAAASVAVSLQAEKLV 223 (456)
T ss_dssp EECCEETTEECBTBEEEEEECHHHHH-----HHHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCSEEE
T ss_pred EEcccccCcccCceeeEEEECHHHHH-----HHHHCCCeEEECCc-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 543 22 344445544333 24578999999995 666 479988887 999999999999999999
Q ss_pred EeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchH--hHHHHHHhCCCC-EEEecCCCC----------CCC
Q 008621 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHP--QSMRPAREGDIP-VRVKNSYNP----------NAP 371 (559)
Q Consensus 305 i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp--~a~~~a~~~~Ip-v~I~n~~~p----------~~~ 371 (559)
|+|||||||++ ++++|++++++|+.+++..|...|.| +++..+.+.|++ ++|.|...| +..
T Consensus 224 ~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~ 297 (456)
T 3d2m_A 224 YLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGI 297 (456)
T ss_dssp EEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCS
T ss_pred EEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCC
Confidence 99999999986 58899999999999999888889999 588888999996 999987554 356
Q ss_pred CeEEecC
Q 008621 372 GTLIRRS 378 (559)
Q Consensus 372 GT~I~~~ 378 (559)
||+|.+.
T Consensus 298 GT~i~~~ 304 (456)
T 3d2m_A 298 GTSIAKE 304 (456)
T ss_dssp SEEEECC
T ss_pred ceeeecc
Confidence 9999864
|
| >3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=200.85 Aligned_cols=233 Identities=20% Similarity=0.333 Sum_probs=165.8
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHH
Q 008621 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (559)
.++++|+||||+.+.+ .++++++.|... .+.++|||+++ |...+.+++.
T Consensus 47 ~~~~iViK~GGsv~~~--~~~~~~~dI~~l~~~G~~~VvVHGg-G~~i~~~l~~-------------------------- 97 (307)
T 3zzh_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLHGT-GPQVNGRLEA-------------------------- 97 (307)
T ss_dssp CSCCEEEEECHHHHHH--SHHHHHHHHHHHHHBTCCEEEEECC-HHHHHHHHHH--------------------------
T ss_pred CCCEEEEEEChHHhhc--hHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHH--------------------------
Confidence 5678999999986653 478888888764 24566666654 5555555432
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec-
Q 008621 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (559)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (559)
++.++ ++.+|++++ +++..|.+ ..+| .+|..| ++.|++.|++|+++++ ++++..
T Consensus 98 -----~gi~~-----------~~~~G~RvT---d~~~l~vv~m~~~-~vn~~l-v~~L~~~G~~Av~l~g---g~~~a~~ 153 (307)
T 3zzh_A 98 -----QGIEP-----------DYIDGIRIT---DEHTMAVVRKCFL-EQNLKL-VTALEQLGVRARPITS---GVFTADY 153 (307)
T ss_dssp -----TTCCC-----------CEETTEECB---CHHHHHHHHHHHH-HHHHHH-HHHHHHTTCCEEEECS---SSEEEEE
T ss_pred -----cCCCc-----------cccCCeecC---CHHHHHHHHHHHH-HHHHHH-HHHHHhCCCCeeEEcC---CcEEEEe
Confidence 22221 123444433 45666655 3467 578776 5789999999999987 345554
Q ss_pred ----CCC-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 235 ----DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 235 ----~~~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+|+ .+++..++...+.. ++++|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++|+|+|||
T Consensus 154 ~~~~d~g~~G~i~~v~~~~i~~-----lL~~g~IpVi~~~-g~~-~~G~~~~i~---~D~~A~~lA~~L~Ad~Li~lTdV 223 (307)
T 3zzh_A 154 LDKDKYKLVGNIKSVTKEPIEA-----SIKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (307)
T ss_dssp SCHHHHBSBEEEEEECCHHHHH-----HHHHTCEEEECCC-EEC-TTCBEEBCC---HHHHHHHHHHHHCCSEEEEECSS
T ss_pred cCccccCccccccccCHHHHHH-----HHHCCCEEEEeCC-eEC-CCCcEEecC---HHHHHHHHHHhCCCCEEEEEeCC
Confidence 344 36777777765554 3467899999996 777 479998887 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHh--HHHHHHhC---CCCEEEecCC-------CCCCCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNSY-------NPNAPGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~~-------~p~~~GT~ 374 (559)
||||++ |++++|++++++| +.++...| ...|.|| +++.|.+. +.+++|.+.. ..+..||+
T Consensus 224 ~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~ 298 (307)
T 3zzh_A 224 GGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTM 298 (307)
T ss_dssp CSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEE
T ss_pred cceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEE
Confidence 999986 5789999999976 66777653 4578887 33444443 8899998732 23568999
Q ss_pred EecCC
Q 008621 375 IRRSR 379 (559)
Q Consensus 375 I~~~~ 379 (559)
|.+..
T Consensus 299 I~~~~ 303 (307)
T 3zzh_A 299 IRRGY 303 (307)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 98753
|
| >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=197.17 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=90.9
Q ss_pred hhcCCcEEEEcCCCcccC----CCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHH
Q 008621 257 WITDLAIPIVTGFLGKAW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (559)
Q Consensus 257 l~~~~~ipVv~Gfig~~~----~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~ 332 (559)
|++.|.|||+.||.|... ..|+..++ .+|++|+.+|.+|+||.|+|+|||||||+ || ..|++++|++++++
T Consensus 178 lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i~~~ 252 (310)
T 2we5_A 178 LIKNDIITISCGGGGIPVVGQELKGVEAVI---DKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNVTVA 252 (310)
T ss_dssp HHHTTCEEECCGGGCEEEETTTTEECCCCC---CHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEEEHH
T ss_pred HHHCCCEEEEECCCCCCCcCCCCCCcEeec---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEEcHH
Confidence 467899999998765331 12333334 49999999999999999999999999999 88 48899999999999
Q ss_pred HHHHHHHcC---CCcchHh--HHHHHHhCCC--CEEEec------CCCCCCCCeEEe
Q 008621 333 EAAELAYFG---AQVLHPQ--SMRPAREGDI--PVRVKN------SYNPNAPGTLIR 376 (559)
Q Consensus 333 Ea~eLa~~G---a~vlhp~--a~~~a~~~~I--pv~I~n------~~~p~~~GT~I~ 376 (559)
|+.+++..| ...|.|| ++..+.+.|+ +++|.| .+..+..||+|.
T Consensus 253 e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 253 ELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp HHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred HHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence 999998754 3668886 6677778888 899964 233345788885
|
| >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=196.74 Aligned_cols=235 Identities=13% Similarity=0.110 Sum_probs=156.9
Q ss_pred CcceEEEEeCccccC--CH--------HHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhH
Q 008621 79 KQLTCVMKFGGSSLA--SA--------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDE 147 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~--~~--------~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~ 147 (559)
+++++|.||||+++. +. +.++++++.|.... ....+|+||++|...+.+++....
T Consensus 3 ~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~-------------- 68 (316)
T 2e9y_A 3 SGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEA-------------- 68 (316)
T ss_dssp -CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHT--------------
T ss_pred CCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCC--------------
Confidence 456799999999999 64 68889998888753 234566778888877766542110
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhH---HHHHHHHHHHHHHcCCce--
Q 008621 148 LSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGE---CMSTRIFAAYLNKIGVKA-- 220 (559)
Q Consensus 148 l~~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE---~lsa~ll~~~L~~~Gi~a-- 220 (559)
.. +..++...|.+ .+.|+ .++ ..+...|.+.|+++
T Consensus 69 -----------------~~--------------------~~t~~~~l~~~~~~~~G~i~~~l~-~~l~~~l~~~g~~a~~ 110 (316)
T 2e9y_A 69 -----------------LP--------------------PERPRQPLYIATAMTQAWIGLLLK-HSLEEELRRRGLNVLV 110 (316)
T ss_dssp -----------------SC--------------------TTSCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCCCC
T ss_pred -----------------CC--------------------CCCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhcCCCccc
Confidence 00 00011222222 22343 456 46888899999998
Q ss_pred ------EEecccce----------EEEEe---------cCC---CC------------ceeeecchHHHHHHHhhchhcC
Q 008621 221 ------RQYDAFDI----------GFITT---------DDF---TN------------ADILEATYPAVAKRLHGDWITD 260 (559)
Q Consensus 221 ------~~l~~~~~----------~iit~---------~~~---~~------------a~i~~~~~~~i~~~l~~~l~~~ 260 (559)
+.+++.|. ++++. ..| ++ ..+...+...+. .|++.
T Consensus 111 ~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~-----~lL~~ 185 (316)
T 2e9y_A 111 PVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIA-----EASAE 185 (316)
T ss_dssp CEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHH-----HHHHH
T ss_pred cceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHH-----HHHHC
Confidence 78887773 23320 001 11 001223333232 34577
Q ss_pred CcEEEEcCCCcc----cCCCCce----eeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHH
Q 008621 261 LAIPIVTGFLGK----AWRTCAI----TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (559)
Q Consensus 261 ~~ipVv~Gfig~----~~~~G~~----~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~ 332 (559)
|.|||++|+.|. + ++|.. .++ ++|++|+++|.+|+||.|+|+|||||||+ ||+ .|++++|++++++
T Consensus 186 g~IpI~~g~~g~pv~~~-~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~ 259 (316)
T 2e9y_A 186 SPAVVALGGGGVPVVER-PGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAAS 259 (316)
T ss_dssp CSEEEECGGGCEEEEEC-TTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHH
T ss_pred CCEEEEECCCCCCeeEC-CCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHH
Confidence 999999976443 4 35532 223 59999999999999999999999999999 885 7999999999999
Q ss_pred HHHHHHHc---CCCcchHh--HHHHHHhCCC-CEEEecC------CCCCCCCeEEec
Q 008621 333 EAAELAYF---GAQVLHPQ--SMRPAREGDI-PVRVKNS------YNPNAPGTLIRR 377 (559)
Q Consensus 333 Ea~eLa~~---Ga~vlhp~--a~~~a~~~~I-pv~I~n~------~~p~~~GT~I~~ 377 (559)
|+.+++.. +...|.|| ++..+.++|+ +++|.|. +.. ..||+|.+
T Consensus 260 e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 260 ELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp HHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence 99999874 34568886 5666778899 8999752 122 57999874
|
| >4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-21 Score=203.90 Aligned_cols=232 Identities=20% Similarity=0.344 Sum_probs=165.5
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHH
Q 008621 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (559)
+++++|+|+||+.+.+ .++++++.|... .+.++|||+ ++|...+.+++.
T Consensus 47 ~~~~iVIK~GGsv~~~--~l~~la~dI~~l~~~G~~~VvVH-GgG~~i~~~l~~-------------------------- 97 (464)
T 4ab7_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLH-GTGPQVNGRLEA-------------------------- 97 (464)
T ss_dssp --CCEEEEECHHHHHH--CHHHHHHHHHHHHHTTCCCEEEE-CCCHHHHHHHHH--------------------------
T ss_pred CCceEEEEECHHHhhc--hHHHHHHHHHHHHHCCCeEEEEE-CCcHHHHHHHHH--------------------------
Confidence 3678999999997754 478888887753 245666655 667666666542
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec-
Q 008621 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (559)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (559)
++.++ ++.+|++++ ++...+.+ +.+| .++.. +++.|++.|++|+++++ ++++.+
T Consensus 98 -----~gi~~-----------~f~~G~RvT---d~~tl~vv~mv~~-~vn~~-lv~~L~~~G~~Avglsg---g~~~a~~ 153 (464)
T 4ab7_A 98 -----QGIEP-----------DYIDGIRIT---DEHTMAVVRKCFL-EQNLK-LVTALEQLGVRARPITS---GVFTADY 153 (464)
T ss_dssp -----TTCCC-----------CEETTEECB---CHHHHHHHHHHHH-HHHHH-HHHHHHHTTCCEEEECS---SSEEEEE
T ss_pred -----cCCCc-----------cccCCeecC---CHHHHHHHHHHHH-HHHHH-HHHHHHhCCCCeEEECC---CcEEEEe
Confidence 22222 133455444 34444443 2346 57866 56789999999999987 345554
Q ss_pred ----CCC-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 235 ----DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 235 ----~~~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+++ .+++..++...+.. +++.|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++|+++|||
T Consensus 154 ~~~~d~g~vG~I~~v~~~~I~~-----lL~~G~IPVi~~~-g~~-~~G~~~ni~---~D~~Aa~lA~~L~Ad~Li~lTdV 223 (464)
T 4ab7_A 154 LDKDKYKLVGNIKSVTKEPIEA-----SIKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (464)
T ss_dssp SCTTTTBSBEEEEEECCHHHHH-----HHHTTCEEEEESE-EEC-TTCBEEECC---HHHHHHHHHHHHCCSEEEEEESS
T ss_pred cCccccCCcCcccccCHHHHHH-----HHHCCcEEEEcCC-cCC-CCCCEEEec---HHHHHHHHHHHcCCCEEEEEecc
Confidence 344 36777777765543 3568999999996 777 479999887 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHh--HHHHHHhC---CCCEEEecC-------CCCCCCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNS-------YNPNAPGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~-------~~p~~~GT~ 374 (559)
||||++ |++++|++|+++| +.+|...| ...|.|| +++.|.+. +.+++|.+. |..++.||+
T Consensus 224 ~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~ 298 (464)
T 4ab7_A 224 GGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTM 298 (464)
T ss_dssp CSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEE
T ss_pred cccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcccCcEEEEecChHHHHHHhcCCCCceE
Confidence 999986 4689999999986 56676643 4578887 45556554 788999863 234568999
Q ss_pred EecC
Q 008621 375 IRRS 378 (559)
Q Consensus 375 I~~~ 378 (559)
|.+.
T Consensus 299 I~~~ 302 (464)
T 4ab7_A 299 IRRG 302 (464)
T ss_dssp EECC
T ss_pred EecC
Confidence 9876
|
| >3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=202.82 Aligned_cols=236 Identities=13% Similarity=0.170 Sum_probs=166.1
Q ss_pred CCcceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHH
Q 008621 78 EKQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (559)
Q Consensus 78 ~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 155 (559)
.+++++|+||||+.+. +.++++++.|.... +.++|||++|+..+++.|.+.+
T Consensus 56 ~~~~~iViK~GGsv~~--~~l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~g------------------------ 109 (460)
T 3s6g_A 56 DQERFAVIKVGGAVIQ--DDLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAAD------------------------ 109 (460)
T ss_dssp CGGGSEEEEECHHHHH--HCHHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHS------------------------
T ss_pred CCCCEEEEEEChHHhh--hHHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcC------------------------
Confidence 3467899999998543 34788888887642 4678888877555555443322
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccce--EEEEe
Q 008621 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFITT 233 (559)
Q Consensus 156 ~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~--~iit~ 233 (559)
.++ ++.+|++++.+.+.....+++ | .+|..|++ +|++.|++|+++.+..+ ..++.
T Consensus 110 --------i~~-----------~f~~G~RvTd~~~l~vv~~~l--g-~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~~ 166 (460)
T 3s6g_A 110 --------IPT-----------ERVDGLRVTRDEAMPIIRDTL--T-QANLALVD-AIRDAGGRAAAVPRGVFEADIVDA 166 (460)
T ss_dssp --------CCC-----------CCCSSSCCBCTTTHHHHHHHH--H-HHHHHHHH-HHHHTTCCEEEECSSSEEEEESCT
T ss_pred --------CCc-----------cccCCccCCCHHHHHHHHHHH--H-HHHHHHHH-HHHhCCCCceEEecCeEEEEEecC
Confidence 111 133455555444444444444 6 78988776 79999999999998432 11112
Q ss_pred cCCCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccc
Q 008621 234 DDFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (559)
Q Consensus 234 ~~~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (559)
.+|+. +++..++...+.. +++.|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++++++||||||
T Consensus 167 ~d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p~-g~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~Gv 236 (460)
T 3s6g_A 167 DKLGRVGEPRHIHLDLVGS-----AARAGQAAILACL-GET-PDGTLVNIN---ADVAVRALVHALQPYKVVFLTGTGGL 236 (460)
T ss_dssp TTTBSEEEEEEECCHHHHH-----HHHTTCEEEEECE-EEC-TTCCEEEEC---HHHHHHHHHHHHCCSEEEEECSSCSC
T ss_pred cccCccCcceEEcHHHHHH-----HHHCCcEEEEECc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 24553 6777777765544 3568999999985 777 479999897 99999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHH-HHHHHHHcC--CCcchHh--HHHHHHhCCCCEEEecCCCC----------CCCCeEEec
Q 008621 313 LTCDPNIHPHAKPVPYLTFD-EAAELAYFG--AQVLHPQ--SMRPAREGDIPVRVKNSYNP----------NAPGTLIRR 377 (559)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~-Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ipv~I~n~~~p----------~~~GT~I~~ 377 (559)
|+. ++++|++++.. |+.+|...| ...|.|| ++..+.+...++++.+...| ++.||+|.+
T Consensus 237 ~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~ 310 (460)
T 3s6g_A 237 LDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRR 310 (460)
T ss_dssp BCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEEC
T ss_pred cCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEc
Confidence 984 47899999996 888887753 4577886 55566664334666655444 467999987
Q ss_pred C
Q 008621 378 S 378 (559)
Q Consensus 378 ~ 378 (559)
.
T Consensus 311 ~ 311 (460)
T 3s6g_A 311 G 311 (460)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=187.62 Aligned_cols=151 Identities=15% Similarity=0.077 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeee
Q 008621 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (559)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tl 282 (559)
.+++. +.++|+++|+++.++++.++++.+.+ ...+...+. .+++++.|||++||++.+. .|++.++
T Consensus 98 ~ln~~-l~~~l~~~G~~a~~l~~~d~~~~~~g-------~~v~~~~i~-----~lL~~g~ipVi~~~~~~~~-~g~~~~~ 163 (266)
T 3k4o_A 98 RFNNI-IIDTLQSYDIPAVSIQPSSFVVFGDK-------LIFDTSAIK-----EMLKRNLVPVIHGDIVIDD-KNGYRII 163 (266)
T ss_dssp HHHHH-HHHHHHTTTCCEEEECGGGTCEESSS-------CBCCCHHHH-----HHHHTTCEEEEECEEEEES-SSCEEEE
T ss_pred HHHHH-HHHHHHHCCCcEEEeeHHHcCcccCc-------eEecHHHHH-----HHHHCCCEEEEeCCEEEcC-CCCeeee
Confidence 47777 67889999999999999998666532 112333232 2357899999999988873 6666544
Q ss_pred cCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchHhHHHHHH
Q 008621 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHPQSMRPAR 354 (559)
Q Consensus 283 gRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~--------~Ga~vlhp~a~~~a~ 354 (559)
+ +|++|+++|.+|+|+++++|||||||| +||++ +++++.+|+.++.. ++...|.||-.....
T Consensus 164 ~---~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~------i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~ 233 (266)
T 3k4o_A 164 S---GDDIVPYLANELKADLILYATDVDGVL-IDNKP------IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRK 233 (266)
T ss_dssp C---HHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSB------CSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHcCCCEEEEEecCCeEE-eCCee------cCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHH
Confidence 4 999999999999999999999999999 88865 45555444444432 344568887332222
Q ss_pred hCCCCEEEecCCCCC---------CCCeEEecC
Q 008621 355 EGDIPVRVKNSYNPN---------APGTLIRRS 378 (559)
Q Consensus 355 ~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (559)
-.. +++|.|...|+ ..||+|.+.
T Consensus 234 a~~-~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 234 NKC-RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp TTC-EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred Hhc-CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 223 99999987763 579999863
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=201.51 Aligned_cols=148 Identities=19% Similarity=0.341 Sum_probs=127.1
Q ss_pred ccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC----------ceeEEEeCCCchhhHHHH
Q 008621 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE----------VSLSLTLDPSKLWSRELI 451 (559)
Q Consensus 382 ~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe----------~sIs~~v~~~~~~~~~~~ 451 (559)
....|+||++++|++.|++.+ +.+.+|+.+++|+.|+++||+||||.++. .+++|+++++++..
T Consensus 431 ~~~~v~Gia~~~~~a~i~i~~--~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~---- 504 (600)
T 3l76_A 431 HLPAVRGVALDQDQAQIAIRH--VPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQ---- 504 (600)
T ss_dssp -CCSCCEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHH----
T ss_pred ccCceEEEEeeCCEEEEEEec--CCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHH----
Confidence 445799999999999999984 88999999999999999999999997651 37999998776431
Q ss_pred HHHHHHHHHHHHHhh---hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH
Q 008621 452 QQASELDHVVEELEK---IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA 527 (559)
Q Consensus 452 ~~~~~l~~~~~~L~~---~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~ 527 (559)
...+++++.. ...+.+.+++|+||+||. |...||+++|+|++|+++||||.||++ ||++||++|+++|.
T Consensus 505 -----a~~~l~~~~~~~~~~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mist--SEi~Is~vV~~~~~ 577 (600)
T 3l76_A 505 -----AEAILQPLIKDWLDAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIAT--SEIKISCVVPQDRG 577 (600)
T ss_dssp -----HHHHHHHHTTTSTTCEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEE--CSSEEEEEEEGGGH
T ss_pred -----HHHHHHHHHHhcCCceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEc--CCceEEEEEeHHHH
Confidence 2223333332 246888899999999997 889999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHHHhccCc
Q 008621 528 EQCVRALHETFFESD 542 (559)
Q Consensus 528 ~kAv~~LH~~f~~~~ 542 (559)
++|+++||++|+.++
T Consensus 578 ~~Av~alh~~F~l~~ 592 (600)
T 3l76_A 578 VDALKAAHSAFNLAG 592 (600)
T ss_dssp HHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999999764
|
| >3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-20 Score=198.09 Aligned_cols=235 Identities=17% Similarity=0.284 Sum_probs=162.0
Q ss_pred CCcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHH
Q 008621 78 EKQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (559)
Q Consensus 78 ~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 155 (559)
++++++|+||||+.+.+ .++.+++.|... .+.++|||++|+..+++.|.+.
T Consensus 59 ~~~~~iViK~GG~v~~~--~l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~------------------------- 111 (467)
T 3s6k_A 59 DAKRFAVVKVGGAVLRD--DLEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAA------------------------- 111 (467)
T ss_dssp CSTTSCCCCCCHHHHTT--CCHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTT-------------------------
T ss_pred CCCcEEEEEEChHHhhh--HHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHc-------------------------
Confidence 45678999999996554 368888887764 2457787777655444433222
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH-hhhHHHHHHHHHHHHHHcCCceEEecccce--EEEE
Q 008621 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFIT 232 (559)
Q Consensus 156 ~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~il-s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~--~iit 232 (559)
+.++ ++.+|+++ .+++..+.+. .+| .++..|++ +|++.|++|+++.+..+ ..++
T Consensus 112 -------gi~~-----------~f~~G~Rv---Td~~~l~vv~~~~g-~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~ 168 (467)
T 3s6k_A 112 -------GIEK-----------QTVNGLRV---TSPHALAIVRKVFQ-ASNLKLVE-ALQQNGARATSITGGVFEAEYLN 168 (467)
T ss_dssp -------SCCC-----------CCCSSSCC---BCHHHHHHHHHHHH-HHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSC
T ss_pred -------CCCc-----------cccCCccC---CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEcCccEEEEecc
Confidence 1111 12233332 2455666553 457 88988776 79999999999998442 2222
Q ss_pred ecCCC-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 233 TDDFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 233 ~~~~~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
..+|+ .++|..++...+.. +++.|.|||+++ +|.+ .+|++++++ +|++|+.+|.+|+|++|+|+|||||
T Consensus 169 ~~d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p-vg~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~G 238 (467)
T 3s6k_A 169 RDTYGLVGEVKAVNLAPIEA-----SLQAGSIPVITS-LGET-PSGQILNVN---ADFAANELVQELQPYKIIFLTGTGG 238 (467)
T ss_dssp SSSSBSBBCCCCBCCHHHHT-----HHHHTCBCCCCS-CCCC-SSSCCCBCC---HHHHHHHHHHHHCCSSCCCCCSSCS
T ss_pred CcccCccceEEEEcHHHHHH-----HHHCCCEEEEEC-ceEC-CCCcEEecC---HHHHHHHHHHhcCCCEEEEEecccc
Confidence 33555 36776666654443 456789999995 3555 368888887 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHH-HHHHHHHc--CCCcchHh--HHHHHHhCCCCEEEecCCCCC----------CCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFD-EAAELAYF--GAQVLHPQ--SMRPAREGDIPVRVKNSYNPN----------APGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~-Ea~eLa~~--Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I~ 376 (559)
||+.| +++|++++.. |+.++... +...|.|| ++..+.+...++++.+...|+ +.||+|.
T Consensus 239 v~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~ 312 (467)
T 3s6k_A 239 LLDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVR 312 (467)
T ss_dssp CCCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBC
T ss_pred eeCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEe
Confidence 99854 6789999985 77777764 34678886 666666643357777766553 4689987
Q ss_pred cC
Q 008621 377 RS 378 (559)
Q Consensus 377 ~~ 378 (559)
+.
T Consensus 313 ~~ 314 (467)
T 3s6k_A 313 RG 314 (467)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=156.63 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=83.8
Q ss_pred hchhcCCcEEEEcCC--CcccC----CCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccc
Q 008621 255 GDWITDLAIPIVTGF--LGKAW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPY 328 (559)
Q Consensus 255 ~~l~~~~~ipVv~Gf--ig~~~----~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ 328 (559)
+.|++.+.|||..|. ++... ..|...+ +.+|++|+++|.+|+||.++|+|||||||+.+|+ |++++|++
T Consensus 197 ~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~v---id~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~~ 271 (332)
T 4axs_A 197 KQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGV---IDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALKT 271 (332)
T ss_dssp HHHHHTTCEEECCGGGCEEEEESSSCEEECSSC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECSS
T ss_pred HHhhcCCeEEEecccCCCCccccCCcccCceee---echHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhccc
Confidence 345678888777542 11110 0122333 3499999999999999999999999999998886 78999999
Q ss_pred cCHHHHHHHHHcC---CCcchHh--HHHHHHhCC--CCEEEecCCCC-----CCCCeEEe
Q 008621 329 LTFDEAAELAYFG---AQVLHPQ--SMRPAREGD--IPVRVKNSYNP-----NAPGTLIR 376 (559)
Q Consensus 329 ls~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~--Ipv~I~n~~~p-----~~~GT~I~ 376 (559)
+|.+|+.++...| ...|-|| |...+.+.+ .+..|.+..+. ...||+|.
T Consensus 272 it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~~GT~Iv 331 (332)
T 4axs_A 272 VDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKII 331 (332)
T ss_dssp CBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTSSSEEEB
T ss_pred CCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCCCCcEEe
Confidence 9999999998754 5679997 555556654 45667543221 13699886
|
| >3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.4e-15 Score=149.37 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=93.5
Q ss_pred hhchhcCCcEEEEcCCCcccC--CCCcee-eecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccC
Q 008621 254 HGDWITDLAIPIVTGFLGKAW--RTCAIT-TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (559)
Q Consensus 254 ~~~l~~~~~ipVv~Gfig~~~--~~G~~~-tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls 330 (559)
.+.|+++|.|||++||.|... .++..+ +..++++|++|+.+|.+|+||.|+|+|||||||+ ||+ .|++++|++++
T Consensus 181 I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~~it 258 (317)
T 3kzf_A 181 IKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLEEIK 258 (317)
T ss_dssp HHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECCEEE
T ss_pred HHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECcCcC
Confidence 334568899999998777521 234343 3446779999999999999999999999999999 999 69999999999
Q ss_pred HHHHHHHHHcC---CCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeEEec
Q 008621 331 FDEAAELAYFG---AQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIRR 377 (559)
Q Consensus 331 ~~Ea~eLa~~G---a~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~ 377 (559)
++|+.++...| ...|.|| |+..+.+.+.+++|.|..+. ...||+|.+
T Consensus 259 ~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~~GT~I~~ 316 (317)
T 3kzf_A 259 LSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIK 316 (317)
T ss_dssp HHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTSSSEEEEC
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCCCCeEEec
Confidence 99999998643 4578886 44445567788999875322 126999875
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-09 Score=98.94 Aligned_cols=113 Identities=16% Similarity=0.273 Sum_probs=84.8
Q ss_pred ccchhhHHHHHHHHHHhCCCcEEEEEecC---ce-eEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEE
Q 008621 405 MLGQYGFLAKVFSTFEDLGISVDVVATSE---VS-LSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIIS 480 (559)
Q Consensus 405 m~~~~g~larIf~~L~~~gI~Vd~IstSe---~s-Is~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiIS 480 (559)
+.+.||.++++|+.|+++|||+++++++. .. ++|+.++.+ ...+++++. . . .....+
T Consensus 13 v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d~~-----------~a~~~L~~~---G-~----~v~~~s 73 (144)
T 2f06_A 13 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPD-----------KAYKALKDN---H-F----AVNITD 73 (144)
T ss_dssp ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHH-----------HHHHHHHHT---T-C----CEEEEE
T ss_pred ecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCCHH-----------HHHHHHHHc---C-C----eEeeee
Confidence 35689999999999999999999997542 23 457653211 122222222 1 1 123457
Q ss_pred EEe-eccccchHHHHHHHHHHhCCCcE-EEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008621 481 LIG-NVQRSSLILEKAFRVLRRSGVNV-QMISQGASKVNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 481 IVG-~~~~~~gv~~ri~~~L~~~~InI-~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
++| .|...||++++++++|+++|||| .+++.. ++...+++++.+|.++|+++||++
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~~d~~~A~~~L~~~ 131 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSNMDKCIEVLKEK 131 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEeCCHHHHHHHHHHc
Confidence 899 48899999999999999999999 566653 677889999999999999999997
|
| >2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-07 Score=87.80 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=81.1
Q ss_pred CcchHhHHHHHHhCCC--CEEEecCCCCCCCCeEEecCCC--------------CccceeeEEeeecCeEEEEEEecCcc
Q 008621 343 QVLHPQSMRPAREGDI--PVRVKNSYNPNAPGTLIRRSRD--------------MSKAVLTSIVLKRNVTMLDIVSTRML 406 (559)
Q Consensus 343 ~vlhp~a~~~a~~~~I--pv~I~n~~~p~~~GT~I~~~~~--------------~~~~~It~Is~~~~ialItV~~~~m~ 406 (559)
..+-.+-++++.++|| ++.+.|+++|+..+|.|+-.-. ......+.+...+++++|++.|.+|.
T Consensus 27 ~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~ 106 (178)
T 2dtj_A 27 PGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK 106 (178)
T ss_dssp TTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCT
T ss_pred ccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcc
Confidence 3344566888999995 5667788887766677652100 01112456888999999999999999
Q ss_pred chhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 407 ~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+.||+++++|+.|+++||||.|+++|+.+++|.|+.++.
T Consensus 107 ~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV~~~d~ 145 (178)
T 2dtj_A 107 SHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDL 145 (178)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred cCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHH
Confidence 999999999999999999999999999999999988764
|
| >4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-06 Score=82.59 Aligned_cols=60 Identities=15% Similarity=0.412 Sum_probs=56.2
Q ss_pred eeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 386 It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
...+...+++++|++.|.+|.+.||+.+|+|+.|++.|||+.||++||.+||+.|++++.
T Consensus 106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~ 165 (200)
T 4go7_X 106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTEL 165 (200)
T ss_dssp CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGH
T ss_pred eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHH
Confidence 446788899999999999999999999999999999999999999999999999998764
|
| >2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=81.56 Aligned_cols=69 Identities=30% Similarity=0.456 Sum_probs=62.9
Q ss_pred hceeecccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCC-----ceEEEEEEecccHHHHHHHHHH
Q 008621 467 IAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGAS-----KVNISLIVNDDEAEQCVRALHE 536 (559)
Q Consensus 467 ~~~v~~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaS-----e~sIs~vV~~~d~~kAv~~LH~ 536 (559)
+..|+..+++++|+++| +.+.||+++++|++|+++||||.||+|+.+ +.+++|+|++++.+++.+.|++
T Consensus 7 v~gIa~~~~~a~Itv~g-~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~ 80 (167)
T 2dt9_A 7 VTGVALDLDHAQIGLIG-IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEP 80 (167)
T ss_dssp EEEEEEECSEEEEEEEE-EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHH
T ss_pred eeEEEEeCCEEEEEEec-CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHH
Confidence 45688889999999999 566799999999999999999999999876 7899999999999999999987
|
| >2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.9e-06 Score=77.52 Aligned_cols=102 Identities=22% Similarity=0.276 Sum_probs=74.4
Q ss_pred CcchHhHHHHHHhCCCCEEEecCCCCCCCC----eEEecCCCC-----------ccceeeEEeeecCeEEEEEEecCccc
Q 008621 343 QVLHPQSMRPAREGDIPVRVKNSYNPNAPG----TLIRRSRDM-----------SKAVLTSIVLKRNVTMLDIVSTRMLG 407 (559)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~G----T~I~~~~~~-----------~~~~It~Is~~~~ialItV~~~~m~~ 407 (559)
..+-.+-+..+.++||++...+..... .| |.+.+..+. ..-.++.+...++++++++.|.+|.+
T Consensus 37 ~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~~ 115 (167)
T 2re1_A 37 PGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMRS 115 (167)
T ss_dssp TTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCTT
T ss_pred cCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcCC
Confidence 334445677888899987665433221 24 222222110 01124578889999999999999999
Q ss_pred hhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 408 QYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 408 ~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
.||+++++|+.|+++||+|.++++|+.+++|.++.++.
T Consensus 116 ~~Gv~a~i~~aL~~~~InI~~istse~~is~vv~~~d~ 153 (167)
T 2re1_A 116 HVGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYM 153 (167)
T ss_dssp CCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGH
T ss_pred CcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEEeHHHH
Confidence 99999999999999999999999999999999987654
|
| >3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.9e-06 Score=77.36 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=61.4
Q ss_pred hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEeccc-HHHHHHHHHH
Q 008621 467 IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDE-AEQCVRALHE 536 (559)
Q Consensus 467 ~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d-~~kAv~~LH~ 536 (559)
+..|+..+++++|++.|. |...||+++++|+.|+++||+|.||+| |+.+|+|.|++++ ++++++.|++
T Consensus 9 v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~--s~~~Isf~v~~~~~~~~il~~l~~ 78 (157)
T 3mah_A 9 IKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT--SEVGVSLTIDNDKNLPDIVRALSD 78 (157)
T ss_dssp CCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC--CSSEEEEEESCCTTHHHHHHHHTT
T ss_pred eEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe--cCCEEEEEECChHHHHHHHHHHhc
Confidence 456888899999999997 888999999999999999999999998 6889999999988 7788888876
|
| >3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.8e-06 Score=76.61 Aligned_cols=103 Identities=14% Similarity=0.258 Sum_probs=73.7
Q ss_pred CcchHhHHHHHHhCCCCEEEecCCCCCC-CC-eEE---ecCCCCcc-----------ceeeEEeeecCeEEEEEEecCcc
Q 008621 343 QVLHPQSMRPAREGDIPVRVKNSYNPNA-PG-TLI---RRSRDMSK-----------AVLTSIVLKRNVTMLDIVSTRML 406 (559)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~-~G-T~I---~~~~~~~~-----------~~It~Is~~~~ialItV~~~~m~ 406 (559)
..+-.+-+..+.++||++.......|+. .| +.| .+..+..+ -....|...+++++|++.|.+|.
T Consensus 28 ~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~gm~ 107 (181)
T 3s1t_A 28 PGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMR 107 (181)
T ss_dssp TTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEECCT
T ss_pred cCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEecccc
Confidence 3344455677778888765543222321 22 122 22221110 02346778899999999999999
Q ss_pred chhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 407 ~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+.||+++++|+.|+++|||+.|+++|+.+|+|.+++++.
T Consensus 108 ~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~ 146 (181)
T 3s1t_A 108 SHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTEL 146 (181)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred cCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHH
Confidence 999999999999999999999999999999999998764
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00019 Score=76.98 Aligned_cols=102 Identities=13% Similarity=0.194 Sum_probs=76.5
Q ss_pred CCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCc---c---------ceeeEEeeecCeEEEEEEecCccchh
Q 008621 342 AQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS---K---------AVLTSIVLKRNVTMLDIVSTRMLGQY 409 (559)
Q Consensus 342 a~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~---~---------~~It~Is~~~~ialItV~~~~m~~~~ 409 (559)
...+-.+-+..+.+++|++...++. . ..=|...+..+.. . -....|...+++++|++.|.+|.+.+
T Consensus 311 ~~g~~~~if~~l~~~~i~vd~i~~~-~-~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~ 388 (446)
T 3tvi_A 311 EVGFCRKILSILEMYGVSFEHMPSG-V-DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTK 388 (446)
T ss_dssp STTHHHHHHHHHHTTTCCEEEBCEE-T-TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCT
T ss_pred cHHHHHHHHHHHHHcCCcEEEEecC-C-CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCCh
Confidence 3445567788999999998876532 1 1112222221111 0 01246788899999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCch
Q 008621 410 GFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (559)
Q Consensus 410 g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~ 445 (559)
|+++++|+.|+++||||.||+ +|+.+|+|.|++++.
T Consensus 389 Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~ 426 (446)
T 3tvi_A 389 GIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDF 426 (446)
T ss_dssp THHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGH
T ss_pred hHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHH
Confidence 999999999999999999999 789999999998764
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00024 Score=75.76 Aligned_cols=101 Identities=17% Similarity=0.323 Sum_probs=74.5
Q ss_pred cchHhHHHHHHhCCCCEEEec--CCCCCCCC-e---EEecCCCCcc-----------ceeeEEeeecCeEEEEEEecCcc
Q 008621 344 VLHPQSMRPAREGDIPVRVKN--SYNPNAPG-T---LIRRSRDMSK-----------AVLTSIVLKRNVTMLDIVSTRML 406 (559)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n--~~~p~~~G-T---~I~~~~~~~~-----------~~It~Is~~~~ialItV~~~~m~ 406 (559)
.+-.+-++.+.++||++.... +.+ ...| + .+.+..+..+ -....+...++++++++.|.+|.
T Consensus 277 g~~~~If~~La~~~I~vd~I~q~~s~-~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~ 355 (421)
T 3ab4_A 277 GEAAKVFRALADAEINIDMVLQNVFS-VEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK 355 (421)
T ss_dssp THHHHHHHHHHHTTCCCEEEEECCCC---CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGT
T ss_pred cHHHHHHHHHHHcCCcEEEEEccCcc-ccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCcc
Confidence 333466888899999977653 221 0124 2 2223221100 01236778899999999999999
Q ss_pred chhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 407 ~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+.+|+++++|+.|+++||||.|+++|+.+++|.++.++.
T Consensus 356 ~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~~~d~ 394 (421)
T 3ab4_A 356 SHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDL 394 (421)
T ss_dssp SCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred cCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHH
Confidence 999999999999999999999999999999999998764
|
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=71.57 Aligned_cols=108 Identities=15% Similarity=0.245 Sum_probs=79.3
Q ss_pred HHHHHHHHhCCCcEEEEEecC--ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccccc
Q 008621 413 AKVFSTFEDLGISVDVVATSE--VSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSS 489 (559)
Q Consensus 413 arIf~~L~~~gI~Vd~IstSe--~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~ 489 (559)
.+..+...++||++...++.. ..=++..+.... +-..+..|...+++++|++.|. |...+
T Consensus 293 ~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~~~~~-----------------~~~~v~gIa~~~~~~~I~i~~~~m~~~~ 355 (510)
T 2cdq_A 293 PQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRDM-----------------TKSILTSIVLKRNVTMLDIASTRMLGQV 355 (510)
T ss_dssp HHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCCC-----------------TTCCEEEEEEEEEEEEEEEECGGGTTCT
T ss_pred HHHHHHHHHCCCeEEEEccCcCCCCCeEEeccccc-----------------cccccccccccCCeEEEEEEcCCCCCcc
Confidence 456666778999987666433 223444433210 0011456888899999999996 88889
Q ss_pred hHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH------HHHHHHHHHHhc
Q 008621 490 LILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA------EQCVRALHETFF 539 (559)
Q Consensus 490 gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~------~kAv~~LH~~f~ 539 (559)
|+++++|+.|++++|+|.||++ |+.+|||.|++++. .+.++.+.+++-
T Consensus 356 g~~~~if~~la~~~I~vd~I~s--se~sis~~v~~~~~~~~~~~~~~l~~~~~el~ 409 (510)
T 2cdq_A 356 GFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEELE 409 (510)
T ss_dssp THHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGGSSSCCCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCCcEEEEEe--CCCeEEEEEechHhhhhhHHHHHHHHHHHHhC
Confidence 9999999999999999999987 79999999998874 456666666554
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0025 Score=68.39 Aligned_cols=58 Identities=12% Similarity=0.316 Sum_probs=52.5
Q ss_pred eeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCch
Q 008621 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (559)
Q Consensus 386 It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~ 445 (559)
+..+...+++++|++.|.+|.+.+|+.+++|+.|++ |||.||+ +|+.+|+|.|++++.
T Consensus 377 ~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~ 436 (449)
T 2j0w_A 377 LCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDA 436 (449)
T ss_dssp HSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGH
T ss_pred CCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHH
Confidence 346788899999999999999999999999999965 9999999 889999999998864
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.14 Score=47.86 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=68.4
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec----CceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhcee
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----EVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIV 470 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS----e~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v 470 (559)
-..|+|.+. +.||+.+++...|+++|+||.-+.+. ...+.+.+.... ...+.++. .+..+..++.-...+
T Consensus 6 ~~~itv~~~---DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-~~~~~l~~--~L~~~~~~~~~~~~~ 79 (192)
T 1u8s_A 6 HLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-SNITRVET--TLPLLGQQHDLITMM 79 (192)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-HHHHHHHH--HHHHHHHHHTCEEEE
T ss_pred EEEEEEEcC---CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-CCHHHHHH--HHHHHHHhcCCEEEE
Confidence 356788764 58999999999999999999876432 233344443221 11122222 333333332211111
Q ss_pred ec--------ccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEec
Q 008621 471 NL--------LQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 512 (559)
Q Consensus 471 ~~--------~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqg 512 (559)
.- .....+|++.| ...||+++++.+.|++.|+||..+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~l~v~~--~D~~Gil~~v~~~l~~~~~nI~~~~~~ 127 (192)
T 1u8s_A 80 KRTSPHDHQTHAYTVEVYVES--DDKLGLTEKFTQFFAQRQIGMASLSAQ 127 (192)
T ss_dssp EEECCCCCCCCSEEEEEEEEE--SCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EeCCCCCCccCCceEEEEEEe--CCCccHHHHHHHHHHHcCCcHHHhhhh
Confidence 11 01346777777 458999999999999999999887664
|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.49 Score=44.47 Aligned_cols=108 Identities=10% Similarity=0.123 Sum_probs=70.1
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe----cCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhc-e
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIA-I 469 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist----Se~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~-~ 469 (559)
...|+|.+. .++|+.+++...|+++|.||.-..+ ....+.+.+......... .+..+.+.|.... .
T Consensus 5 ~~~ltv~~~---DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~------~~~~l~~~L~~~~~~ 75 (195)
T 2nyi_A 5 SFVVSVAGS---DRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKL------IQSALESALPGFQIS 75 (195)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHH------HHHHHHHHSTTCEEE
T ss_pred EEEEEEEeC---CCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchh------HHHHHHHHHHHHHHh
Confidence 356788874 6899999999999999999876532 223334444321110000 1233444454321 0
Q ss_pred --e---------ecccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecC
Q 008621 470 --V---------NLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA 513 (559)
Q Consensus 470 --v---------~~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqga 513 (559)
+ .......+|+|.|. ..||+++++.+.|+++|+||.-+.|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~iltv~g~--DrpGiva~Vt~~La~~g~nI~~~~~~t 128 (195)
T 2nyi_A 76 TRRASSVAERHVSPDTREYELYVEGP--DSEGIVEAVTAVLAKKGANIVELETET 128 (195)
T ss_dssp EEECCCC----CCTTEEEEEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cCCeEEEEeCCcCCCCcEEEEEEEeC--CCcCHHHHHHHHHHHcCCCEEEceeee
Confidence 1 11234578999983 589999999999999999999888753
|
| >1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.095 Score=46.73 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=69.0
Q ss_pred EEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCc
Q 008621 427 DVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVN 505 (559)
Q Consensus 427 d~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~In 505 (559)
..++..+..+|++++.+.+. ..+........+++.|. -..-.|+++.+...|+++||.
T Consensus 34 ~~is~t~eelSvV~~~~~~p---------------------~~~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIs 92 (134)
T 1zhv_A 34 VSITRTDDELSIVCLIDRIP---------------------QDVRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIG 92 (134)
T ss_dssp CEEEECSSCEEEEEEGGGSC---------------------TTSEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCC
T ss_pred EEEEEcCCeEEEEEehhhCc---------------------cCCccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCC
Confidence 34555666788888654210 11344567788999886 456789999999999999999
Q ss_pred EEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008621 506 VQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 506 I~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
+..|++-.++. ++|++++.++|+++|.+..+
T Consensus 93 if~iSty~tD~---IlVp~~~~~~Ai~aL~~~~~ 123 (134)
T 1zhv_A 93 IFVVSTFDGDH---LLVRSNDLEKTADLLANAGH 123 (134)
T ss_dssp CEEEECSSCEE---EEEEGGGHHHHHHHHHHTTC
T ss_pred eEEEEeccccE---EEEeHHHHHHHHHHHHHcCc
Confidence 99999876666 79999999999999998755
|
| >1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.14 Score=45.65 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=65.3
Q ss_pred EEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCc
Q 008621 427 DVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVN 505 (559)
Q Consensus 427 d~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~In 505 (559)
.++......+|++++.+.. . + ..+....+...|++.|. -..-.|+++.+...|+++||.
T Consensus 42 ~~i~~t~eelSvV~~~~~a------------~----~----~~l~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIs 101 (133)
T 1zvp_A 42 IATFREPEGLTLVLEAEKA------------Q----Q----AGLESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGIS 101 (133)
T ss_dssp SEEEEETTEEEEEEEHHHH------------H----H----TTCCCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCC
T ss_pred eEEEEcCCcEEEEEchHhc------------c----c----cCCccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCC
Confidence 3455566778888864311 0 1 12345667889999996 566789999999999999999
Q ss_pred EEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 506 VQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 506 I~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
+..|++...+. ++|++++.++|+++|.
T Consensus 102 if~iSty~tDh---IlVp~~~~~~A~~~L~ 128 (133)
T 1zvp_A 102 ANVIAGYYHDH---IFVQKEKAQQALQALG 128 (133)
T ss_dssp CEEEECSSCEE---EEEEGGGHHHHHHHHT
T ss_pred cEEEEeccccE---EEEehhHHHHHHHHHH
Confidence 99999876666 8999999999999885
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.14 Score=45.63 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=36.8
Q ss_pred EEEecCccchhhHHHHHHHHHHhCCCcE-EEEEe-cCceeEEEeCCCc
Q 008621 399 DIVSTRMLGQYGFLAKVFSTFEDLGISV-DVVAT-SEVSLSLTLDPSK 444 (559)
Q Consensus 399 tV~~~~m~~~~g~larIf~~L~~~gI~V-d~Ist-Se~sIs~~v~~~~ 444 (559)
++.+.+|.+.||.++++|+.|+++|||+ .++++ ++...++.++.++
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d 120 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN 120 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCC
Confidence 4555568899999999999999999999 45666 6777787776554
|
| >3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=85.42 E-value=10 Score=39.18 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=68.7
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC----ceeEEEeCCCchh-hHHHHHHHHHHHHHHHHHhhhce
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE----VSLSLTLDPSKLW-SRELIQQASELDHVVEELEKIAI 469 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe----~sIs~~v~~~~~~-~~~~~~~~~~l~~~~~~L~~~~~ 469 (559)
..+|++.+. .+||+.+++...|+++|+||.-+.+.. ....+.++-.... ..+.++. .+..+-+++.-...
T Consensus 12 ~~~lt~~g~---Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~~~~~ 86 (415)
T 3p96_A 12 SVLITVTGV---DQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRH--DVEAAIRKVGLDVS 86 (415)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHH--HHHHHHHHTTCEEE
T ss_pred eEEEEEEcC---CCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHH--HHHHHHHHcCeEEE
Confidence 357888875 689999999999999999998776432 2222222211110 1011221 33333333331111
Q ss_pred ee--------cccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEec
Q 008621 470 VN--------LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 512 (559)
Q Consensus 470 v~--------~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqg 512 (559)
+. ...+..++.++|.- .+++...++...+++.|+|+.-+..-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~llg~~-~~~~~~~~i~~~l~~~~~Ni~~l~~~ 136 (415)
T 3p96_A 87 IERSDDVPIIREPSTHTIFVLGRP-ITAAAFGAVAREVAALGVNIDLIRGV 136 (415)
T ss_dssp EEECSSSCSSCCCCSEEEEEEESS-CCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEECCcccccCCCCcEEEEEEeCC-CCHHHHHHHHHHHHHcCCCccceeec
Confidence 11 12356889999951 26789999999999999998865543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 559 | ||||
| d2cdqa1 | 304 | c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar | 4e-96 | |
| d2hmfa1 | 302 | c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja | 2e-69 | |
| d2j0wa1 | 292 | c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli | 3e-67 | |
| d2cdqa2 | 91 | d.58.18.10 (A:329-419) Aspartokinase {Thale cress | 2e-21 | |
| d2cdqa2 | 91 | d.58.18.10 (A:329-419) Aspartokinase {Thale cress | 2e-07 | |
| d2cdqa3 | 75 | d.58.18.10 (A:420-494) Aspartokinase {Thale cress | 3e-19 | |
| d2hmfa2 | 67 | d.58.18.10 (A:404-470) Aspartokinase {Methanococcu | 9e-17 | |
| d2hmfa2 | 67 | d.58.18.10 (A:404-470) Aspartokinase {Methanococcu | 5e-04 | |
| d2j0wa2 | 91 | d.58.18.10 (A:295-385) Aspartokinase {Escherichia | 1e-16 | |
| d2j0wa2 | 91 | d.58.18.10 (A:295-385) Aspartokinase {Escherichia | 5e-11 | |
| d2j0wa3 | 64 | d.58.18.10 (A:386-449) Aspartokinase {Escherichia | 1e-13 | |
| d2j0wa3 | 64 | d.58.18.10 (A:386-449) Aspartokinase {Escherichia | 0.002 | |
| d2hmfa3 | 100 | d.58.18.10 (A:304-403) Aspartokinase {Methanococcu | 3e-13 | |
| d2hmfa3 | 100 | d.58.18.10 (A:304-403) Aspartokinase {Methanococcu | 4e-07 | |
| d2a1fa1 | 236 | c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi | 7e-12 | |
| d1ybda1 | 236 | c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri | 7e-10 | |
| d2ij9a1 | 219 | c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog | 8e-10 | |
| d2brxa1 | 225 | c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc | 2e-06 | |
| d2brxa1 | 225 | c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc | 0.002 |
| >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 293 bits (750), Expect = 4e-96
Identities = 251/304 (82%), Positives = 278/304 (91%)
Query: 79 KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG 138
K +TCVMKFGGSS+ASAERM+EVA+LIL+FP E PVIVLSAMGKTTN LLLAGEKAVSCG
Sbjct: 1 KGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCG 60
Query: 139 VTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV 198
V+N S I+ELS +K+LH RTV EL ID S+I T+LEELEQLLKGIAM+KELT R+RDYLV
Sbjct: 61 VSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLV 120
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
SFGEC+STRIFAAYLN IGVKARQYDAF+IGFITTDDFTN DILEATYPAVAKRL+ DW+
Sbjct: 121 SFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWM 180
Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
D A+PIVTGFLGK W+T A+TTLGRGGSDLTATTIGKALGL+EIQVWKDVDGVLTCDP
Sbjct: 181 HDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPT 240
Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
I+ A PVPYLTFDEAAELAYFGAQVLHPQSMRPAREG+IPVRVKNSYNP APGT+I ++
Sbjct: 241 IYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKT 300
Query: 379 RDMS 382
RDM+
Sbjct: 301 RDMT 304
|
| >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 223 bits (570), Expect = 2e-69
Identities = 115/309 (37%), Positives = 178/309 (57%), Gaps = 17/309 (5%)
Query: 82 TCVMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGV 139
T VMKFGG+S+ S ER+R VA+++ E V+V+SAM + TN L+ ++A+
Sbjct: 1 TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR- 59
Query: 140 TNISCIDEL-SFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELTP 191
+I+ + + F+++ H++ ++E + II + +EELE++L G+A L ELTP
Sbjct: 60 -DIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTP 118
Query: 192 RSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAK 251
+SRDY++SFGE +S+ I + + +G K+ + + G IT ++F +A +
Sbjct: 119 KSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLL 178
Query: 252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
L + I V ITTLGRGGSD +A IG L I++W DV G
Sbjct: 179 PLLKE-----GIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSG 233
Query: 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
V T DP + P A+ +P L++ EA ELAYFGA+VLHP+++ PA E IP+ VKN++ P +
Sbjct: 234 VYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESE 293
Query: 372 GTLIRRSRD 380
GTLI +
Sbjct: 294 GTLITNDME 302
|
| >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 217 bits (554), Expect = 3e-67
Identities = 100/302 (33%), Positives = 151/302 (50%), Gaps = 18/302 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS N R ++VLSA TN L+ A++ G+
Sbjct: 4 VSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLV-----ALAEGLEPGE 57
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKG-----IAMLKELTPRSRDYLV 198
++L ++++ ++ L EE+E+LL+ A +P D LV
Sbjct: 58 RFEKLDAIRNIQFAILERLRYPNV----IREEIERLLENITVLAEAAALATSPALTDELV 113
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
S GE MST +F L + V+A+ +D + + A A +L
Sbjct: 114 SHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLN 173
Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
+ I GF+G + TTLGRGGSD TA + +AL + +W DV G+ T DP
Sbjct: 174 EG--LVITQGFIGSENKGR-TTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 230
Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
+ AK + + F EAAE+A FGA+VLHP ++ PA DIPV V +S +P A GTL+
Sbjct: 231 VVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNK 290
Query: 379 RD 380
+
Sbjct: 291 TE 292
|
| >d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 86.3 bits (214), Expect = 2e-21
Identities = 81/92 (88%), Positives = 87/92 (94%), Gaps = 2/92 (2%)
Query: 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDP 442
K++LTSIVLKRNVTMLDI STRMLGQ GFLAKVFS FE+LGISVDVVATSEVS+SLTLDP
Sbjct: 1 KSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDP 60
Query: 443 SKLWSRELIQQASELDHVVEELEKIAIVNLLQ 474
SKLWSRELIQQ ELDHVVEELEKIA+VNLL+
Sbjct: 61 SKLWSRELIQQ--ELDHVVEELEKIAVVNLLK 90
|
| >d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 46.7 bits (111), Expect = 2e-07
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 477 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
+++ + + L K F + G++V +++ S+V+ISL ++ +
Sbjct: 14 TMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELIQQ 71
Query: 536 ETF 538
E
Sbjct: 72 ELD 74
|
| >d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 80.2 bits (198), Expect = 3e-19
Identities = 52/67 (77%), Positives = 58/67 (86%)
Query: 476 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
R+IISLIGNVQ SSLILE+AF VL GVNVQMISQGASKVNIS IVN+ EAE CV+ALH
Sbjct: 1 RAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALH 60
Query: 536 ETFFESD 542
++FFES
Sbjct: 61 KSFFESG 67
|
| >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 67 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 72.4 bits (178), Expect = 9e-17
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 477 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
+IS++G R + I K F + SG N++MI+QG+S+VNIS ++++ + CVR LH
Sbjct: 2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLH 61
Query: 536 ETFFE 540
E F E
Sbjct: 62 EKFIE 66
|
| >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 67 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 36.6 bits (85), Expect = 5e-04
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445
V ++ +V M G G K+F+ + G ++ ++A +SEV++S +D L
Sbjct: 1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDL 53
|
| >d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 73.3 bits (180), Expect = 1e-16
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 385 VLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444
+ ++ L+RN T+L + S ML GFLA+VF ISVD++ TSEVS++LTLD +
Sbjct: 4 LFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTG 63
Query: 445 LWSRELIQQASELDHVVEELEKIAIVNL 472
++ EL + V +
Sbjct: 64 S---TSTGDTLLTQSLLMELSALCRVEV 88
|
| >d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 57.1 bits (138), Expect = 5e-11
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 477 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
++++L S L + F +L R ++V +I+ S+V+++L ++ + L
Sbjct: 15 TLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT--SEVSVALTLDTTGSTSTGDTLL 72
Query: 536 ETFFESDLANLDCV 549
+L+ L V
Sbjct: 73 TQSLLMELSALCRV 86
|
| >d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 64 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 63.6 bits (155), Expect = 1e-13
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 477 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535
++++LIGN + + ++ F VL N++MI GAS N+ +V ++AEQ V+ LH
Sbjct: 2 ALVALIGNDLSKACGVGKEVFGVL--EPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLH 59
Query: 536 ETFFE 540
FE
Sbjct: 60 SNLFE 64
|
| >d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 64 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 35.1 bits (81), Expect = 0.002
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445
++ ++ + G +VF E I + S +L +
Sbjct: 2 ALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDA 51
|
| >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 100 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 63.3 bits (154), Expect = 3e-13
Identities = 21/72 (29%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 470 VNLLQHRSIISLIG-NVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE 528
++ +++ ++I++ G + S + F+ L VNV +ISQG+S+ NISL+V++++ +
Sbjct: 9 ISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVD 68
Query: 529 QCVRALHETFFE 540
+ ++AL F +
Sbjct: 69 KALKALKREFGD 80
|
| >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 100 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 46.0 bits (109), Expect = 4e-07
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 381 MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEVSLSL 438
MS +++ +I +NV +++I M+G G A++F + ++V ++ +SE ++SL
Sbjct: 1 MSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISL 60
Query: 439 TLDPSKL 445
+ +
Sbjct: 61 VVSEEDV 67
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Score = 63.5 bits (153), Expect = 7e-12
Identities = 43/230 (18%), Positives = 71/230 (30%), Gaps = 29/230 (12%)
Query: 160 DELGIDRSIIATHLEELEQLLK-----GIAMLKELTPRSRDYLVSFGECMSTRIFAAYLN 214
D LGID +I+ E+++L++ + + R L G L
Sbjct: 21 DGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAK-LAKAGMNRVVGDHMGMLA 79
Query: 215 KIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW 274
+ D+ + + + +
Sbjct: 80 TVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLRE-----------KRVV 128
Query: 275 RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEA 334
A T +D TA G + + VDGV CDP +P AK L++ E
Sbjct: 129 IFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEV 188
Query: 335 AELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA---------PGTLI 375
+ +V+ + AR+ +P+RV N P A GT I
Sbjct: 189 IDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Score = 57.4 bits (137), Expect = 7e-10
Identities = 41/230 (17%), Positives = 68/230 (29%), Gaps = 29/230 (12%)
Query: 160 DELGIDRSIIATHLEELEQLLK-----GIAMLKELTPRSRDYLVSFGECMSTRIFAAYLN 214
D GI+ I + E+ +++K GI + R + +
Sbjct: 20 DPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMAT 79
Query: 215 KIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW 274
+ A + +G + +A+ I GK
Sbjct: 80 VMNALALKDAFETLGIK------ARVQSALSMQQIAETYARPKA------IQYLEEGKVV 127
Query: 275 RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEA 334
A T +D A G + + +VDGV T DP P A +TFDEA
Sbjct: 128 IFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEA 187
Query: 335 AELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA---------PGTLI 375
+V+ + RE + + V + GTL+
Sbjct: 188 LLK---NLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 234
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 56.8 bits (136), Expect = 8e-10
Identities = 34/223 (15%), Positives = 65/223 (29%), Gaps = 28/223 (12%)
Query: 167 SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAF 226
S+++ E++ + K I + + +V G+ I +A Y
Sbjct: 10 SVLSNESEKIREFAKTIESVAQQ--NQVFVVVGGGKLAREYIKSARELGASETFCDYIGI 67
Query: 227 DIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG 286
+ +A A V + + ++ G T
Sbjct: 68 AATRLNAMLLISAIPSAAKKVPVDFMEAEELSKLYRVVVMGG------------TFPGHT 115
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQ--- 343
+D TA + + + +VDGV + DP A L+ + E+ +
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175
Query: 344 ---VLHPQSMRPAREGDIPVRVKNSYNPN--------APGTLI 375
V+ + + I V N A GT+I
Sbjct: 176 TNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVI 218
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Score = 46.9 bits (110), Expect = 2e-06
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 15/103 (14%)
Query: 288 DLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHP 347
D A + + L + V +VDGV T DP P AK + + +E E+ G +
Sbjct: 121 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGS 180
Query: 348 QSM------RPAREGDIPVRVKNSYNPN---------APGTLI 375
S+ + I V + GT I
Sbjct: 181 SSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Score = 37.7 bits (86), Expect = 0.002
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 84 VMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGE 132
V GGS L + ++E+A + + V V+ GK K + E
Sbjct: 4 VFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAE 56
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 559 | |||
| d2cdqa1 | 304 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 100.0 | |
| d2j0wa1 | 292 | Aspartokinase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d2hmfa1 | 302 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 100.0 | |
| d2brxa1 | 225 | Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: | 99.96 | |
| d2a1fa1 | 236 | Uridylate kinase PyrH {Haemophilus influenzae [Tax | 99.94 | |
| d2ij9a1 | 219 | Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax | 99.92 | |
| d2akoa1 | 250 | Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1 | 99.91 | |
| d1ybda1 | 236 | Uridylate kinase PyrH {Neisseria meningitidis [Tax | 99.91 | |
| d1z9da1 | 238 | Uridylate kinase PyrH {Streptococcus pyogenes [Tax | 99.83 | |
| d2bufa1 | 300 | N-acetyl-l-glutamate kinase {Pseudomonas aeruginos | 99.8 | |
| d2ap9a1 | 291 | N-acetyl-l-glutamate kinase {Mycobacterium tubercu | 99.8 | |
| d2btya1 | 282 | N-acetyl-l-glutamate kinase {Thermotoga maritima [ | 99.79 | |
| d2hmfa2 | 67 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 99.64 | |
| d1e19a_ | 313 | Carbamate kinase {Archaeon Pyrococcus furiosus [Ta | 99.62 | |
| d2cdqa3 | 75 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 99.6 | |
| d1gs5a_ | 258 | N-acetyl-l-glutamate kinase {Escherichia coli [Tax | 99.56 | |
| d1b7ba_ | 307 | Carbamate kinase {Enterococcus faecium [TaxId: 135 | 99.55 | |
| d2hmfa3 | 100 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 99.51 | |
| d2j0wa3 | 64 | Aspartokinase {Escherichia coli [TaxId: 562]} | 99.46 | |
| d2cdqa2 | 91 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 99.35 | |
| d2j0wa2 | 91 | Aspartokinase {Escherichia coli [TaxId: 562]} | 99.18 | |
| d2hmfa3 | 100 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 99.1 | |
| d2j0wa2 | 91 | Aspartokinase {Escherichia coli [TaxId: 562]} | 99.03 | |
| d2cdqa2 | 91 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 98.9 | |
| d2hmfa2 | 67 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 98.52 | |
| d2cdqa3 | 75 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 98.12 | |
| d2j0wa3 | 64 | Aspartokinase {Escherichia coli [TaxId: 562]} | 98.0 | |
| d1zhva2 | 66 | Hypothetical protein Atu0741 {Agrobacterium tumefa | 95.7 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 93.6 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 93.29 | |
| d1zvpa2 | 64 | Hypothetical protein VC0802 {Vibrio cholerae [TaxI | 93.18 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 89.28 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 89.11 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 88.6 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 87.34 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 87.33 | |
| d1zhva2 | 66 | Hypothetical protein Atu0741 {Agrobacterium tumefa | 86.27 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 80.37 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 80.31 |
| >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.1e-76 Score=603.29 Aligned_cols=302 Identities=83% Similarity=1.264 Sum_probs=279.6
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
.+++|+|||||||+|++++++|+++|+...+.++|||||||||+||.|+++++.+.+.+..+..+.+.|+.++++|.+++
T Consensus 2 ~~~~V~KFGGTSv~~~~~i~~v~~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 81 (304)
T d2cdqa1 2 GITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTV 81 (304)
T ss_dssp CCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHHHHHHHHHHH
T ss_pred CCeEEEeeCccccCCHHHHHHHHHHHHhcCCCCcEEEEeCCCCChHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHH
Confidence 36689999999999999999999999987667889999999999999999999888777666667778999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCc
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (559)
++|..+.+.+.+.+++|+++++++..+++++++.+|+|+|+||+||+.|++++|+++|+++.++|+++++++|+++|+++
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~l~~i~~~~~~s~~~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a 161 (304)
T d2cdqa1 82 KELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNG 161 (304)
T ss_dssp HHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTC
T ss_pred HHhccchhHHHHHHHHHHHHHhhhccccccchhhHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccc
Confidence 99999988899999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred eeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCC
Q 008621 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (559)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~ 319 (559)
++...+.....++....+++++.|||+|||+|.+.++|+++|||||||||||+++|++|+|++++||||||||||+|||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~v~vv~Gfig~~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~ 241 (304)
T d2cdqa1 162 DILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTI 241 (304)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTT
T ss_pred cccccchhhhHHHHhhhhhccCcEEEeeccccccCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccc
Confidence 98776655554444444567789999999999863479999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCC
Q 008621 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM 381 (559)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~ 381 (559)
+|+|++|++|||+||+||+++||+||||+|++|+++++|||+|+|+|+|+.+||+|+++.++
T Consensus 242 v~~a~~i~~lsy~EA~ela~~GakvlHp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~~~ 303 (304)
T d2cdqa1 242 YKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRDM 303 (304)
T ss_dssp CTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCCC
T ss_pred cCCceEcCccCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999977543
|
| >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-71 Score=566.05 Aligned_cols=286 Identities=35% Similarity=0.518 Sum_probs=252.3
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHHh
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (559)
|+|+|||||||+|++++++|+++|.+. .++++||||||||+||.|+++++.+.++ +....++.++++|..++++
T Consensus 2 ~iV~KFGGTSv~~~~~i~~v~~ii~~~-~~~~vVVVSA~~gvTd~L~~~~~~~~~~-----~~~~~l~~i~~~h~~~~~~ 75 (292)
T d2j0wa1 2 IVVSKFGGTSVADFDAMNRSADIVLSD-ANVRLVVLSASAGITNLLVALAEGLEPG-----ERFEKLDAIRNIQFAILER 75 (292)
T ss_dssp CEEEEECSGGGSSHHHHHHHHHHHTSC-TTEEEEEECCCTTHHHHHHHHTTCCCHH-----HHHHHHHHHHHHHHHHHTT
T ss_pred eEEEeeCccccCCHHHHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHhhccC-----CCHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999864 3578999999999999999988765432 3456789999999999999
Q ss_pred cCCCH---HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 162 LGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 162 L~~~~---~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
+..+. +.++.++++|+.+++++.. +++++.+|+|+|+||+||+.|++++|+++|+++.++|++++ +++++.+++
T Consensus 76 l~~~~~~~~~l~~~~~~l~~l~~~~~~--~~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~-i~t~~~~~~ 152 (292)
T d2j0wa1 76 LRYPNVIREEIERLLENITVLAEAAAL--ATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGR 152 (292)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTTS
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhc--ccChHHHHHHHhhhHHHhHHHHHHHHHhcCCCccccchhhe-eecCCcccc
Confidence 97654 3577888888888887653 67999999999999999999999999999999999999998 888899998
Q ss_pred ceeeecch-HHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCC
Q 008621 239 ADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (559)
Q Consensus 239 a~i~~~~~-~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP 317 (559)
+.+..... .....++.+. .+. .+||+|||+|.+ ++|++||||||||||||+++|++|+|++++||||||||||+||
T Consensus 153 a~~~~~~~~~~~~~~~~~~-~~~-~i~Vv~GFig~~-~~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP 229 (292)
T d2j0wa1 153 AEPDIAALAELAALQLLPR-LNE-GLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDP 229 (292)
T ss_dssp CCBCHHHHHHHHHHHTHHH-HHH-SEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCT
T ss_pred ccchhhhhhhhhhhhhhhh-hcc-cccccccccccc-cCCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechh
Confidence 88754332 2233333332 223 589999999999 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCC
Q 008621 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR 379 (559)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~ 379 (559)
|++|+|++|++|||+||+||+++||+||||+|++|++++||||+|+|+|+|+.+||+|+++.
T Consensus 230 ~~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~ 291 (292)
T d2j0wa1 230 RVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKT 291 (292)
T ss_dssp TTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCC
T ss_pred hcCCCceEcceeCHHHHHHHHhCCccccCHHHHHHHHHcCCcEEEeeCCCCCCCCCeEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999754
|
| >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.9e-69 Score=550.80 Aligned_cols=291 Identities=41% Similarity=0.688 Sum_probs=263.2
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHHH
Q 008621 83 CVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (559)
Q Consensus 83 ~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (559)
.|+|||||||+|+++|++|+++|.+.. +.++|||||||||+||.|+++++.+..... .....+.++.++++|..+++
T Consensus 2 tV~KFGGTSvadae~i~~V~~II~~~~~~~~~~vVVVSA~ggvTn~L~~~~~~a~~~~~-~~~~~~~l~~i~~~h~~~i~ 80 (302)
T d2hmfa1 2 TVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRD-IAKVGDFIKFIREKHYKAIE 80 (302)
T ss_dssp EEEEECTGGGSSHHHHHHHHHHHHHHHHHCSCEEEEECCCTTHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEeCCCCChhHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999997643 357899999999999999999988765432 23456789999999999999
Q ss_pred hcCCCHH-------HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEe
Q 008621 161 ELGIDRS-------IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (559)
Q Consensus 161 ~L~~~~~-------~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~ 233 (559)
+|..+.+ .++..+++|+++++++..+++++++.+|+|+|+||+||+.||+++|+++|+++.++|+++++++++
T Consensus 81 ~l~~~~~~~~~~~~~i~~~l~~L~~~l~~~~~~~e~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~ 160 (302)
T d2hmfa1 81 EAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITD 160 (302)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEEC
T ss_pred HHhccHhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccC
Confidence 9986642 488889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccc
Q 008621 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (559)
Q Consensus 234 ~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (559)
+.++++.+...... +++.+ +++++.|||+|||+|.+ ++|+++|||||||||||+++|.+|+|++++|||||||||
T Consensus 161 ~~~~~a~~~~~~~~---~~l~~-~~~~~~v~Vv~GFig~~-~~G~~ttLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~ 235 (302)
T d2hmfa1 161 NNFGSARVKRLEVK---ERLLP-LLKEGIIPVVTGFIGTT-EEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVY 235 (302)
T ss_dssp SCTTSCCEEEECHH---HHHHH-HHHTTCEEEEESSEEEC-TTCCEEECCTTTHHHHHHHHHHHHTCSEEEEEESSSSCB
T ss_pred CccchhhhhhhhhH---HHHHH-HHhcCCeEEeecccccC-CCCCEEEEeccCcccHHHHHHHHhccHHHHHHhccchhc
Confidence 99999888654432 22332 24568899999999999 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCC
Q 008621 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR 379 (559)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~ 379 (559)
|+||+++|+|+++++|||+||.||+++|++||||+|+.||+++|||++|+|+|+|+.+||+|+++.
T Consensus 236 ~~dP~~~~~a~~~~~~~y~ea~eLa~~g~~v~h~~~~~~~~~~~i~i~v~~~~~~~~~gT~i~~~~ 301 (302)
T d2hmfa1 236 TTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDM 301 (302)
T ss_dssp SSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHTTCCEEEEETTSTTSCCEEEESCC
T ss_pred cchhhcCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHcCCCEEEeeCCCCCCCCCEEcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998753
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=2.2e-29 Score=245.83 Aligned_cols=206 Identities=21% Similarity=0.264 Sum_probs=154.3
Q ss_pred ceEEEEeCccccC----CHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (559)
Q Consensus 81 ~~~V~KFGGsSl~----~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (559)
|.+|+|||||++. +.+.++++++.|.+..+...+|||+++|.+++.+.+.
T Consensus 1 MrIViKiGGs~l~~~~~~~~~i~~l~~~I~~l~~~~~~viV~ggG~~~~~~~~~-------------------------- 54 (225)
T d2brxa1 1 MRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEV-------------------------- 54 (225)
T ss_dssp CEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHHH--------------------------
T ss_pred CeEEEEeehhhcCCCCCCHHHHHHHHHHHHHHHcCCcEEEEECccHHHHHHHHh--------------------------
Confidence 3478999999995 5678999999888754333344444556555444332
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC
Q 008621 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (559)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (559)
.+.++ .++...|++...++++++.++...|++.|++...-
T Consensus 55 --~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------- 94 (225)
T d2brxa1 55 --AEKFN-------------------------SSETFKDFIGIQITRANAMLLIAALREKAYPVVVE------------- 94 (225)
T ss_dssp --HHTTT-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSCBC-------------
T ss_pred --hhhcc-------------------------hhhHHHHHhhhhHHHHHHHHHHHHHHhhhcccccc-------------
Confidence 12222 23455677778899999999999999998874211
Q ss_pred CCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCC
Q 008621 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (559)
Q Consensus 237 ~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (559)
++....+ +++.+.|||+.+.. .+ +.||++|+++|..|+|++|+||||||||||+|
T Consensus 95 --------~~~~~~~-----~l~~~~ipv~~~~~-----~~-------~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~d 149 (225)
T d2brxa1 95 --------DFWEAWK-----AVQLKKIPVMGGTH-----PG-------HTTDAVAALLAEFLKADLLVVITNVDGVYTAD 149 (225)
T ss_dssp --------SHHHHHH-----HHHTTCBCEECCCS-----TT-------CCHHHHHHHHHHHTTCSEEEEECSSSSCBSSC
T ss_pred --------cHHHHHH-----HHHhcccccccCCC-----CC-------cchhHHHHHHHHHhCchhhhhhhhhhhhhhcc
Confidence 1111111 23567899986532 11 23899999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCC------cchHhHHHHHHhCCCCEEEecCCCC---------CCCCeEEec
Q 008621 317 PNIHPHAKPVPYLTFDEAAELAYFGAQ------VLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIRR 377 (559)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~~ 377 (559)
|+.+|+|++|++++|+|+.+++..|.. ++++.|++.|.++|||++|.|+++| +..||+|.|
T Consensus 150 P~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~~k~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P 225 (225)
T d2brxa1 150 PKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 225 (225)
T ss_dssp TTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred cccccccccceEEecchHHHHhccCccccCCCCcccHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence 999999999999999999999998765 6677899999999999999999887 568999975
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Probab=99.94 E-value=7.1e-26 Score=221.43 Aligned_cols=212 Identities=22% Similarity=0.234 Sum_probs=142.1
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCCC--CCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 81 LTCVMKFGGSSLA-------SAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 81 ~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~~--~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
+.+|+|||||||. +.++++++++.|.+..+ ...+||+|++++.....+...
T Consensus 6 kRIViKiGgs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vivVssg~~~~~~~~l~~~-------------------- 65 (236)
T d2a1fa1 6 KRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKA-------------------- 65 (236)
T ss_dssp SEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHT--------------------
T ss_pred cEEEEEEccceecCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecccccchhhhhhhc--------------------
Confidence 4699999999998 67899999999987532 355677777666554433210
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
..+....+..........+.+++..+.............
T Consensus 66 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 104 (236)
T d2a1fa1 66 ------------------------------------GMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF----- 104 (236)
T ss_dssp ------------------------------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS-----
T ss_pred ------------------------------------CCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhh-----
Confidence 001122222333344556666666666666554433221
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
............++.. ..+.+.++++.+. ..+.+|+||.+|+++|.+++|+.|+|||||||
T Consensus 105 ----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------~~~~~~dnD~laa~vA~~~~Ad~lii~TDVdG 165 (236)
T d2a1fa1 105 ----QLNGICDTYNWSEAIK-----MLREKRVVIFSAG----------TGNPFFTTDSTACLRGIEIEADVVLKATKVDG 165 (236)
T ss_dssp ----CCTTTSEECCHHHHHH-----HHHTTCEEEEEST----------TSCSSCCHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred ----hhhhhHHHhhhhhhhh-----hhhhccccccccc----------ccCCCCCCcHHHHHHHHHhchhHHHHhhcccc
Confidence 1111111112222211 1245566666431 12457789999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEE
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI 375 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I 375 (559)
|||+||+.+|+|+++++++|+|+.+ .|++++||+|++.|+++|||++|.|+++|+ ..||+|
T Consensus 166 vyt~dP~~~~~A~~i~~i~~~e~l~---~G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI 235 (236)
T d2a1fa1 166 VYDCDPAKNPDAKLYKNLSYAEVID---KELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235 (236)
T ss_dssp CBCC-------CCBCSEECHHHHHH---TTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEE
T ss_pred cccccccccccccccccccHHHHHh---cCCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCccee
Confidence 9999999999999999999998876 499999999999999999999999999984 579998
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=8.9e-25 Score=211.91 Aligned_cols=203 Identities=20% Similarity=0.264 Sum_probs=147.5
Q ss_pred ceEEEEeCccccCC-HHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLAS-AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~-~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
|.+|.|||||++.+ .++++++++.|.+.. +++.+||||+ |.+.+. |...
T Consensus 1 MrIViKiGgs~l~~~~~~i~~la~~i~~l~~~~~~vIVvsg-G~~ar~----------------------------~~~~ 51 (219)
T d2ij9a1 1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGG-GKLARE----------------------------YIKS 51 (219)
T ss_dssp CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECC-HHHHHH----------------------------HHHH
T ss_pred CEEEEEecccccCCcHHHHHHHHHHHHHHHcCCcEEEEECC-Cccccc----------------------------hhhh
Confidence 45899999999964 789999999998754 3466788886 222111 2223
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
..+++. ++...+++...+..+++.++...|...|.+..
T Consensus 52 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------- 89 (219)
T d2ij9a1 52 ARELGA-------------------------SETFCDYIGIAATRLNAMLLISAIPSAAKKVP----------------- 89 (219)
T ss_dssp HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHCTTBCSSCC-----------------
T ss_pred hhhcCc-------------------------cHHHHHHHHHHHHHhhHHHHHHHhhhccchhh-----------------
Confidence 333432 34455666666777888877776666554320
Q ss_pred ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCC
Q 008621 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (559)
Q Consensus 239 a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (559)
..+.+..+ +++.+.+||..|+++ ++.+|++|+++|..++||.|++|||||||||+||+
T Consensus 90 -----~~~~~~~~-----l~~~~~v~v~~~~~~------------~~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~ 147 (219)
T d2ij9a1 90 -----VDFMEAEE-----LSKLYRVVVMGGTFP------------GHTTDATAALLAEFIKADVFINATNVDGVYSADPK 147 (219)
T ss_dssp -----SSHHHHHH-----HHTTCSEEEECCCSS------------SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCS
T ss_pred -----HHHHHHHH-----HhccCCceEECCCCC------------CCcccHHHHHHHHHcCchHhhhccCcccccccccc
Confidence 11222221 245677998877543 23479999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHcCCC------cchHhHHHHHHhCCCCEEEecCCC--------CCCCCeEEe
Q 008621 319 IHPHAKPVPYLTFDEAAELAYFGAQ------VLHPQSMRPAREGDIPVRVKNSYN--------PNAPGTLIR 376 (559)
Q Consensus 319 ~v~~a~~i~~ls~~Ea~eLa~~Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~--------p~~~GT~I~ 376 (559)
.+|+|++|+++||+|+.+++..|.. ++++.|++.++++|||++|.|+.. .+..||+|+
T Consensus 148 ~~~~A~~i~~is~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~~~ni~~~l~Ge~vGT~Is 219 (219)
T d2ij9a1 148 SDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp SSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECCHHHHHHHHTTCCCSEEEC
T ss_pred cCcccccccccCHHHHHHHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCCCcHHHHHHCCCCCceEeC
Confidence 9999999999999999998765443 799999999999999999998742 245799884
|
| >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Glutamate 5-kinase species: Campylobacter jejuni [TaxId: 197]
Probab=99.91 E-value=3.1e-25 Score=219.37 Aligned_cols=216 Identities=17% Similarity=0.249 Sum_probs=152.2
Q ss_pred ceEEEEeCccccCC-----HHHHHHHHHHHHcCCC-CCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHH
Q 008621 81 LTCVMKFGGSSLAS-----AERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (559)
Q Consensus 81 ~~~V~KFGGsSl~~-----~~~~~~va~iI~~~~~-~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (559)
+.+|.|||||++.+ .++++++++.|++..+ .+.+||+|+++.. +..
T Consensus 1 krIViKlGGs~it~k~~~~~~~l~~~~~~I~~l~~~~~~vIV~gGa~~~-------G~~--------------------- 52 (250)
T d2akoa1 1 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSAAISA-------GHT--------------------- 52 (250)
T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECCHHHH-------HHH---------------------
T ss_pred CEEEEEeccCeeeCCCCcCHHHHHHHHHHHHHHHcCCeEEEEEcCcccc-------ccc---------------------
Confidence 35899999999975 5788899998876533 4556666653111 110
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
.++.. .......+.+.+.||..+..++..+|...|+.+... +++..
T Consensus 53 ------~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~------l~~~~ 98 (250)
T d2akoa1 53 ------KLDID----------------------RKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGK 98 (250)
T ss_dssp ------HCCCC----------------------SSSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTG
T ss_pred ------ccccc----------------------cchhhhhhhhhcccchhHHHHHHHHhhhcccccccc------ccccc
Confidence 01111 112233456678899999999999999999987442 33333
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 235 ~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
.+.... .+....+.+. .+++.+.+||+.|- ..+.+..+++|++|++|+++|..++|++|+++||||||||
T Consensus 99 ~~~~~~----~~~~~~~~~~-~~l~~~~ipv~~~~-----~~~~~~~~~~~~~D~~A~~lA~~~~a~~li~~tdVdGVyd 168 (250)
T d2akoa1 99 DFDSRK----ATKHAKNAID-MMINLGILPIINEN-----DATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYD 168 (250)
T ss_dssp GGGCHH----HHHHHHHHHH-HHHHTTCEEEEEEC-----TTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBS
T ss_pred chhhhh----hhhhhhHHHH-HHHHhCcccccccC-----ccccccccccccchhhHHHHHHhcccceeeeccCCCceee
Confidence 322221 1122222233 34578899998662 2356677889999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchHh--HHHHHHhCCCCEEEecCCCC
Q 008621 315 CDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHPQ--SMRPAREGDIPVRVKNSYNP 368 (559)
Q Consensus 315 aDP~~v~~a~~i~~ls~--~Ea~eLa~-----~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p 368 (559)
+||+.+|+|++|+++|| +|..+++. +|...|.|| ++..++++|||++|.|+++|
T Consensus 169 ~dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~~Kl~aa~~~~~~gi~v~I~nG~~~ 231 (250)
T d2akoa1 169 KNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDL 231 (250)
T ss_dssp SCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCcccccccchhhccccchHHhhhhcccCCCCCCCchHHHHHHHHHHHHCCCCEEEecCCCc
Confidence 99999999999999998 45544443 345678885 78899999999999999887
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Probab=99.91 E-value=2.3e-23 Score=202.72 Aligned_cols=214 Identities=20% Similarity=0.234 Sum_probs=146.9
Q ss_pred ceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 81 ~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
+.+|.|+|||+|. |.+.++++|+.|.+.. ..+.|++||.++.........
T Consensus 5 krIViKiGgs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vviVssG~~~~~~~~~~---------------------- 62 (236)
T d1ybda1 5 KRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQ---------------------- 62 (236)
T ss_dssp SEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH----------------------
T ss_pred CEEEEEECcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecccccccccccc----------------------
Confidence 4589999999997 5678999999998753 335555555433222111000
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (559)
. ...+.................++...+...+..........
T Consensus 63 --------~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 104 (236)
T d1ybda1 63 --------A-------------------------GSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALS----- 104 (236)
T ss_dssp --------H-------------------------TTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSC-----
T ss_pred --------c-------------------------cccccchhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh-----
Confidence 0 01112222333344455566666677777777765543321
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccc
Q 008621 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (559)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (559)
............+.. .++.+.++++..+ ..+.+|++|.+|+++|..++|+.++++||||||
T Consensus 105 ----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------~~~~~gdnD~laa~vA~~~~ad~liilTdVdGv 165 (236)
T d1ybda1 105 ----MQQIAETYARPKAIQ-----YLEEGKVVIFAAG----------TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGV 165 (236)
T ss_dssp ----BSSSCEECCHHHHHH-----HHHTTCEEEEEST----------TSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSC
T ss_pred ----hhhhhhhHHHHHHHh-----hhccCceeccccc----------cccccccchHHHHHHHHHhCccceeeccCccch
Confidence 111111112221211 1244566665331 124678899999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCC---------CCCCeEEe
Q 008621 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIR 376 (559)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~ 376 (559)
||.||+.+|+|+++++++|+|+.+ .|.++|+++|++.|+++|||++|.|+++| +..||+|.
T Consensus 166 y~~dP~~~~~a~~~~~~~~~e~~~---~g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh 235 (236)
T d1ybda1 166 YTADPKKDPSATRYETITFDEALL---KNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 235 (236)
T ss_dssp BSSCGGGCTTCCBCSEEEHHHHHH---TTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred hhccccccccceeeccccHHHHHh---cCchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence 999999999999999999998765 59999999999999999999999999998 56899985
|
| >d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.83 E-value=1.3e-19 Score=175.25 Aligned_cols=218 Identities=17% Similarity=0.166 Sum_probs=148.8
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 80 ~~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
|+.+|.|+|||++. +.+.++++++.|.+.. +...|++||.++..-......
T Consensus 4 ~krIViKiGgs~lt~~~~~~l~~~~l~~ia~~I~~l~~~g~~Vv~v~~g~~~~~~~~~~--------------------- 62 (238)
T d1z9da1 4 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAA--------------------- 62 (238)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHH---------------------
T ss_pred CCEEEEEECcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecccccccceecc---------------------
Confidence 46799999999996 5678999999998753 345566666544332111000
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
. ........++....+......+.+..+...|+..........
T Consensus 63 -------~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--- 105 (238)
T d1z9da1 63 -------D---------------------------AGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPM--- 105 (238)
T ss_dssp -------H---------------------------HTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCB---
T ss_pred -------c---------------------------cCCcchhHHHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhh---
Confidence 0 011233344455556677777788889999998765543221
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
.+ ... ..... ..+.. . ....+++..+.. .....+++|..|+++|..++|+.++++|||||
T Consensus 106 ---~~--~~~-~~~~~---~~i~~-~-~~~~~~~~~~~~---------~~~~~~~~d~~~~~~a~~~~a~~li~~tdVdG 165 (238)
T d1z9da1 106 ---QN--VAE-PYIRG---RALRH-L-EKNRIVVFGAGI---------GSPYFSTDTTAALRAAEIEADAILMAKNGVDG 165 (238)
T ss_dssp ---TT--TBE-ECCHH---HHHHH-H-HTTCEEEEESTT---------SCTTCCHHHHHHHHHHHTTCSEEEEEESSCCS
T ss_pred ---HH--HHh-hhhHH---HHHhh-h-ccccccceecce---------eccCCCCchHHHHHHHHHhhhhhhcccccccc
Confidence 11 110 01111 11111 1 122333332211 11223458899999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCC---------CCCCeEEecC
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIRRS 378 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~~~ 378 (559)
+|++||+..++|++++.+++.|..+ .|..+|+++|++.+.++|||++|.|+++| +..||+|+.+
T Consensus 166 vy~~~P~~~~~a~~~~~~~~~~~~~---~g~~~~k~~Aa~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~~ 238 (238)
T d1z9da1 166 VYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 238 (238)
T ss_dssp CBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred eecccccccccchhhccccccchhc---cCcchhHHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEeccC
Confidence 9999999999999999999987654 58999999999999999999999999998 5689999863
|
| >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.80 E-value=6.8e-19 Score=178.14 Aligned_cols=235 Identities=18% Similarity=0.292 Sum_probs=167.7
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
+++|.|+||+.+.+++.+..+++.|.... +.++|+|+++...+...|.+.+.
T Consensus 27 ktiVIKlGG~~l~~~~~~~~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~gi-------------------------- 80 (300)
T d2bufa1 27 KTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSI-------------------------- 80 (300)
T ss_dssp CEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTC--------------------------
T ss_pred CEEEEEEChHHhCChhHHHHHHHHHHHHHHcCCcEEEecChHHHHHHHHHhccc--------------------------
Confidence 77999999999999988888888777643 34555555544445544433221
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC--
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-- 235 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~-- 235 (559)
+. ++.++.+. .++...+.+ ..++..++..+. +.|++.|+++.++.+.+..++....
T Consensus 81 ------~~-----------~~~~g~Rv---T~~~~l~~~~~~~~g~vn~~lv-~~l~~~g~~a~~l~~~d~~~i~~~~~~ 139 (300)
T d2bufa1 81 ------ES-----------HFIDGMRV---TDAATMDVVEMVLGGQVNKDIV-NLINRHGGSAIGLTGKDAELIRAKKLT 139 (300)
T ss_dssp ------CC-----------CBSSSSBC---BCHHHHHHHHHHHHHTHHHHHH-HHHHHTTCCEEEEEETGGGCEEEEECC
T ss_pred ------Cc-----------eecCCccc---ccchhHHHHHHHHHhHHHHHHH-HHHHhcCCcccccCCCccceEEeeccc
Confidence 11 01222222 233333333 233445676655 5699999999999988876665422
Q ss_pred ---------------CCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcC
Q 008621 236 ---------------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALG 299 (559)
Q Consensus 236 ---------------~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~ 299 (559)
++. .++..++...+ ..+++.+.|||+++ +|.+ .+|+..+++ +|..|+.+|.+|+
T Consensus 140 ~~~~~~~~~~~~~id~g~~G~v~~v~~~~i-----~~ll~~g~Ipvis~-~~~~-~~G~~~nin---~D~~Aa~lA~~L~ 209 (300)
T d2bufa1 140 VTRQTPEMTKPEIIDIGHVGEVTGVNVGLL-----NMLVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEALK 209 (300)
T ss_dssp CCCC--------CCCCBSBEEEEEECHHHH-----HHHHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHHHT
T ss_pred ccccCcccccccccccCcccceeecchhHH-----HHHhcCCCeEEecc-cccC-cccchhccc---HHHHHHHHHHHcC
Confidence 221 23333444333 33467899999998 7888 489999998 9999999999999
Q ss_pred cCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchHh--HHHHHHhCCCC-EEEecCCCC------
Q 008621 300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNP------ 368 (559)
Q Consensus 300 A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga--~vlhp~--a~~~a~~~~Ip-v~I~n~~~p------ 368 (559)
|++++|+|||||||+.+ .+++++++.+|+.++...|. ..|-|| ++..|.++|++ ++|.|+..|
T Consensus 210 AdkLI~Ltdv~Gv~~~~------g~~~~~l~~~~~~~li~~~~i~gGM~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~e 283 (300)
T d2bufa1 210 AEKLMLLTNIAGLMDKQ------GQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLE 283 (300)
T ss_dssp CSEEEEEESSSCCBCTT------SCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHH
T ss_pred CCeEEEEcCCCccccCC------CcchhhccHHHHHHHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Confidence 99999999999999755 45789999999999998775 578886 66778899998 999987665
Q ss_pred ----CCCCeEEecC
Q 008621 369 ----NAPGTLIRRS 378 (559)
Q Consensus 369 ----~~~GT~I~~~ 378 (559)
++.||.|+++
T Consensus 284 Lft~~g~GT~I~~~ 297 (300)
T d2bufa1 284 IFTDSGVGTLISNR 297 (300)
T ss_dssp HSSTTCCSEEEECC
T ss_pred HcCCCCceeEEecC
Confidence 4579999875
|
| >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=7e-19 Score=177.15 Aligned_cols=237 Identities=21% Similarity=0.252 Sum_probs=166.3
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
+++|.|+||+.+.+++.++.+++.|.... +.++|+|.++.....+.|.+..... .
T Consensus 26 ktiVIKlGGsvl~~~~~~~~l~~dia~L~~~G~~vVlVhGg~~~i~~~l~~~~~~~---~-------------------- 82 (291)
T d2ap9a1 26 KVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEG---D-------------------- 82 (291)
T ss_dssp CEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCC---C--------------------
T ss_pred CEEEEEECcHHhcCHHHHHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHcCCCc---c--------------------
Confidence 67999999999999999999998888753 3355555444333444444332110 0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH-hhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec---
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD--- 234 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~il-s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~--- 234 (559)
+.++. +..++...+.+. ..++..+ ..+.+.+...|+.+..+.+.+.+++...
T Consensus 83 --------------------~~~~~---r~t~~~~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~ 138 (291)
T d2ap9a1 83 --------------------FKGGF---RVTTPEVLDVARMVLFGQVG-RELVNLINAHGPYAVGITGEDAQLFTAVRRS 138 (291)
T ss_dssp --------------------CSSSS---CCBCHHHHHHHHHHHHHTHH-HHHHHHHTTSSSCEEEEETTGGGCEEEEECC
T ss_pred --------------------ccccc---ccCcHHHHHHHHHhhhhHHH-HHHHHHHHhcCCccccchhhhcccccccccc
Confidence 01111 112344444442 3344444 4466779999999999887765554431
Q ss_pred --------CCCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEE
Q 008621 235 --------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (559)
Q Consensus 235 --------~~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i 305 (559)
+++. .++...+...+.. +++.+.|||+++ .|.+ .+|+..+++ +|.+|+.+|.+|+|+.|+|
T Consensus 139 ~~~~~~~~~~~~~G~v~~v~~~~I~~-----ll~~g~ipvi~~-~~~~-~~g~~~n~d---~D~lAa~lA~~l~AdkLI~ 208 (291)
T d2ap9a1 139 VTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVST-LAPD-ADGVVHNIN---ADTAAAAVAEALGAEKLLM 208 (291)
T ss_dssp BCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEES-EEEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEEE
T ss_pred cccccccccceeecccccchHHHHHH-----HHhcCCCcccCc-cccC-Ccccccccc---HHHHHHHHHHhcCCcEEEE
Confidence 1221 3344455544433 457899999999 4667 479998887 9999999999999999999
Q ss_pred eeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHh--HHHHHHhCCCC-EEEecCCCC----------CCCC
Q 008621 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAPG 372 (559)
Q Consensus 306 ~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~G 372 (559)
+|||||||+.+|+. ...++.++..|+.++...+...|.|| ++..|.+.|+| ++|.|+..| ++.|
T Consensus 209 LTdv~Gv~~~~~~~---~~~~~~~~~~~~~~~~~~~~gGM~~Kl~aA~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~G 285 (291)
T d2ap9a1 209 LTDIDGLYTRWPDR---DSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTG 285 (291)
T ss_dssp EESSSSEETTTTCT---TCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCS
T ss_pred eeccCccccccccc---ccccccCCHHHHHHHHhhhhCchHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCc
Confidence 99999999998864 45678899999999988888889986 66778889998 999987655 4589
Q ss_pred eEEec
Q 008621 373 TLIRR 377 (559)
Q Consensus 373 T~I~~ 377 (559)
|+|.+
T Consensus 286 T~I~r 290 (291)
T d2ap9a1 286 TKVVR 290 (291)
T ss_dssp EEEEC
T ss_pred eEEec
Confidence 99875
|
| >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=1.7e-18 Score=173.64 Aligned_cols=234 Identities=22% Similarity=0.268 Sum_probs=162.9
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
+.+|.|+||+.+.+++.++++++.|.... +.++|+|+++....+..|.+..... ..
T Consensus 22 k~iVIKlGgsvi~~~~~~~~l~~dIa~L~~~G~~iVlVhGg~~~~~~~l~~~~i~~---~~------------------- 79 (282)
T d2btya1 22 KTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEP---VF------------------- 79 (282)
T ss_dssp CEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCC---CB-------------------
T ss_pred CEEEEEECchHhCChhHHHHHHHHHHHHHHCCCeEEEEECCCccchhhHHHcCCcc---ee-------------------
Confidence 67999999999999999999999888653 3455555554444444443321100 00
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhh-hHHHHHHHHHHHHHHcCCceEEecccceEEEEec---
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF-GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD--- 234 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~-GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~--- 234 (559)
..+. +-.+....+.+... ...++ ..+...|++.|+++..+++.+.......
T Consensus 80 ---------------------~~~~---~~t~~~~~~~~~~~~~~~~n-~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~ 134 (282)
T d2btya1 80 ---------------------KNGH---RVTDEKTMEIVEMVLVGKIN-KEIVMNLNLHGGRAVGICGKDSKLIVAEKET 134 (282)
T ss_dssp ---------------------SSSS---BCBCHHHHHHHHHHHHHTHH-HHHHHHHHTTTCCEEEEETTGGGSEEEEECC
T ss_pred ---------------------ccCc---cccchhhHHHHHHHHhchhh-HHHHHHHHhcCCCeeeeeccccceeEecccc
Confidence 0000 11123333333222 22334 4456679999999999998775444432
Q ss_pred ---CCCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 235 ---~~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
+++. .++..++...+.. +++++.|||++++ |.+ .+|++.+++ +|.+|+.+|.+|+|++++++||||
T Consensus 135 ~~~d~~~~g~~~~v~~~~i~~-----lL~~~~ipvi~~~-~~~-~~g~~~nl~---~d~~aa~iA~~l~AdkLI~ltdv~ 204 (282)
T d2btya1 135 KHGDIGYVGKVKKVNPEILHA-----LIENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDVD 204 (282)
T ss_dssp TTCCCBSBEEEEEECTHHHHH-----HHHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESSS
T ss_pred ccccccccccccccChHHHHH-----HHhCCCceeecCc-ccC-Ccceeeecc---ccchhHHHhhhcCCceeEEecccc
Confidence 2222 4555566554443 3568899999995 666 489999887 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchHh--HHHHHHhCCCC-EEEecCCCC----------CCCCeEE
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAPGTLI 375 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga--~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~GT~I 375 (559)
|+|. +.+++++++.+|+.++...|. ..|-|| ++..|.++|+| ++|.|+..| ++.||+|
T Consensus 205 Gl~~-------d~~~i~~~~~~~~~~~~~~~~~tgGM~~Kl~aA~~A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I 277 (282)
T d2btya1 205 GVLK-------DGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI 277 (282)
T ss_dssp SCEE-------TTEECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEE
T ss_pred ceec-------CccccccCCHHHHHHHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEE
Confidence 9995 357899999999999987653 467775 77888999998 999987655 4579999
Q ss_pred ecC
Q 008621 376 RRS 378 (559)
Q Consensus 376 ~~~ 378 (559)
++.
T Consensus 278 ~~~ 280 (282)
T d2btya1 278 KEL 280 (282)
T ss_dssp CCC
T ss_pred EeC
Confidence 874
|
| >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=2.5e-16 Score=123.46 Aligned_cols=65 Identities=40% Similarity=0.729 Sum_probs=62.9
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
+|+|+++|. |.+.||+++|+|++|+++||||.||+||+|+++|+|+|+++|.++|+++||++||.
T Consensus 1 Va~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~~~Av~~Lh~~F~~ 66 (67)
T d2hmfa2 1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIE 66 (67)
T ss_dssp EEEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEEeHHHHHHHHHHHHHHHhc
Confidence 589999997 88999999999999999999999999999999999999999999999999999996
|
| >d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.62 E-value=5.7e-15 Score=149.57 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=85.5
Q ss_pred hcCCcEEEEcCCCc-------ccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccC
Q 008621 258 ITDLAIPIVTGFLG-------KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (559)
Q Consensus 258 ~~~~~ipVv~Gfig-------~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls 330 (559)
.+.+.+|++.+... .+ .+|+..+.+ +|..|+.+|.+++|+.++++|||||||+.+|+ ++++++++++
T Consensus 182 ~~~~~i~vl~~~~~~~v~~~~~~-~~G~~~nin---aD~lAa~vA~~l~Ad~LIlLTdv~Gv~~~~~~--~~~~~i~~l~ 255 (313)
T d1e19a_ 182 VERGVIVIASGGGGVPVILEDGE-IKGVEAVID---KDLAGEKLAEEVNADIFMILTDVNGAALYYGT--EKEQWLREVK 255 (313)
T ss_dssp HHTTCEEECSGGGCEEEEEETTE-EEECCCCCC---HHHHHHHHHHHTTCSEEEEEESSSSCEETTTS--TTCEECCEEE
T ss_pred cccchhhhhccCCCCCccccCCC-cCceEEecc---hhHHHHHHHHHHHHHHHHhccCCcceeccCCC--cccceeeeCC
Confidence 46778888865311 11 135666666 99999999999999999999999999998775 6789999999
Q ss_pred HHHHHHHHHcC---CCcchHh--HHHHHHhCCC-CEEEecCCCC-----CCCCeEEec
Q 008621 331 FDEAAELAYFG---AQVLHPQ--SMRPAREGDI-PVRVKNSYNP-----NAPGTLIRR 377 (559)
Q Consensus 331 ~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~I-pv~I~n~~~p-----~~~GT~I~~ 377 (559)
.+|+.++...| ...|-|| ++..|.+.|+ +++|.+..+. .+.||+|.|
T Consensus 256 ~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~~~~i~~~l~g~~GT~i~P 313 (313)
T d1e19a_ 256 VEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGKTGTQVLP 313 (313)
T ss_dssp HHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTTSSSEEEEC
T ss_pred HHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECChHHHHHHHCCCCCCEEcC
Confidence 99999998754 4569997 5555556665 6888653221 125999975
|
| >d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.60 E-value=4.3e-16 Score=124.77 Aligned_cols=70 Identities=77% Similarity=1.074 Sum_probs=65.4
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC-ccccc
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES-DLANL 546 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~-~~~~~ 546 (559)
|+||+||+|.+.||+++|+|++|+++||||.||+||+|+++|+|+|+++|.++|+++||++||.+ +.+++
T Consensus 2 a~IsvVG~~~~~~Giaarif~aL~~~~InV~mIsqg~se~~Is~vV~~~d~~~Av~~Lh~~f~~~~~~~~v 72 (75)
T d2cdqa3 2 AIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFESGDLSEL 72 (75)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHHSSCCCCCC
T ss_pred cEEEEECCCCCChhHHHHHHHHHHHcCCceEEEEcCccceEEEEEEeHHHHHHHHHHHHHHHhcCCCceeE
Confidence 79999999888999999999999999999999999999999999999999999999999999987 34443
|
| >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=3.1e-14 Score=138.09 Aligned_cols=236 Identities=15% Similarity=0.178 Sum_probs=153.6
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHH
Q 008621 79 KQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (559)
||+.+|.|||||++.|.+.++++++.|.... +.++|||||++|...+.+++..
T Consensus 1 Mm~~IVIKiGgs~lt~~~~~~~~~~~ia~l~~~g~~~vvvvhG~g~~~~~~~~~~------------------------- 55 (258)
T d1gs5a_ 1 MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGL------------------------- 55 (258)
T ss_dssp CCCCEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHH-------------------------
T ss_pred CCCCEEEEECchhccCHHHHHHHHHHHHHHHHCCCceEEEECCCchhhhcchhhh-------------------------
Confidence 5778999999999999999999999988743 3577899998877666654321
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC-
Q 008621 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (559)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~- 235 (559)
+..+. +..+. +..+......+...........+...+...|.++......+........
T Consensus 56 ------g~~~~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (258)
T d1gs5a_ 56 ------NLPVK-----------KKNGL---RVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQL 115 (258)
T ss_dssp ------TCCCC-----------EETTE---ECBCHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEECTTGGGCEEEEEC
T ss_pred ------ccccc-----------ccccc---chhhHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccccccccccc
Confidence 11000 00000 0111222222211111122234556788899998888766543332221
Q ss_pred ---CC-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 236 ---FT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 236 ---~~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
+. ...+.......+.. ++..+.+|++.++ +.+ .++...++. +|..|+.+|..++|+. .++||++|
T Consensus 116 ~~~~~~~~~~~~~~~~~i~~-----~~~~~~i~v~~~~-~~~-~~~~~~~~~---~~~~a~~~a~~l~a~~-~~~~~~~~ 184 (258)
T d1gs5a_ 116 DEELGHVGLAQPGSPKLINS-----LLENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGADL-ILLSDVSG 184 (258)
T ss_dssp CGGGBSBEEEEECCCHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCEE-EEEESSSS
T ss_pred cccccccccccccccchHHH-----HHhcccccccccc-ccc-cCCcEEEec---hhhhhhhHHHHHHhhh-hhhccccc
Confidence 11 13334444443332 2457889999985 445 367887777 9999999999999985 57899999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHc--CCCcchHh--HHHHHHhCCCC-EEEecCCCC---------CCCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYF--GAQVLHPQ--SMRPAREGDIP-VRVKNSYNP---------NAPGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~--Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p---------~~~GT~I~ 376 (559)
++..++. ..+.+...|...+... +...|-|| ++..|.+.|++ ++|.|+.+| ++.||+|.
T Consensus 185 ~~~~~~~------~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~ 257 (258)
T d1gs5a_ 185 ILDGKGQ------RIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp CBCTTSC------BCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred ccccccc------cccccchHHHHHHHhCCcccchHHHHHHHHHHHHHcCCCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence 9987654 4556677777666654 44678886 77888899996 999988766 45799985
|
| >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Enterococcus faecium [TaxId: 1352]
Probab=99.55 E-value=4.9e-14 Score=141.90 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=80.6
Q ss_pred hcCCcEEEEcCC-----CcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHH
Q 008621 258 ITDLAIPIVTGF-----LGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (559)
Q Consensus 258 ~~~~~ipVv~Gf-----ig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~ 332 (559)
+..+.+|+..+- .+.+ .+|+..+.+ +|..|+.+|.+|+|+.++++|||||||+.+|+ |+.+++++++.+
T Consensus 178 ~~~~~i~~~~~~~~~~~~~~~-~~g~~~nin---aD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~--~~~~~i~~l~~~ 251 (307)
T d1b7ba_ 178 IKNDIITISCGGGGIPVVGQE-LKGVEAVID---KDFASEKLAELVDADALVILTGVDYVCINYGK--PDEKQLTNVTVA 251 (307)
T ss_dssp HHTTEEEECSGGGCEEEETTT-TEECSCCCC---HHHHHHHHHHHHTCSEEEEECSSSSCEETTTS--TTCEECSEEEHH
T ss_pred hhcCceeeccCCccccccccC-CCCcEEecc---hhHHHHHHHHHhhhhheeeccccCceeeCCCc--ccccccccCCHH
Confidence 345667765331 1333 357777777 99999999999999999999999999999886 677889999999
Q ss_pred HHHHHHHcC---CCcchHh--HHHHHHhCCCC-EEEec
Q 008621 333 EAAELAYFG---AQVLHPQ--SMRPAREGDIP-VRVKN 364 (559)
Q Consensus 333 Ea~eLa~~G---a~vlhp~--a~~~a~~~~Ip-v~I~n 364 (559)
|+.+|...| ...|.|| ++..|.+.|++ ++|.+
T Consensus 252 e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~ 289 (307)
T d1b7ba_ 252 ELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIIT 289 (307)
T ss_dssp HHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEE
T ss_pred HHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEEC
Confidence 999998865 4569997 78888999996 55554
|
| >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=99.51 E-value=1.6e-14 Score=122.02 Aligned_cols=76 Identities=28% Similarity=0.505 Sum_probs=71.0
Q ss_pred hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008621 467 IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542 (559)
Q Consensus 467 ~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 542 (559)
+..|++.+|+++|+++|. |...||+++|+|++|+++||||.||+|++|+++|+|+|+++|.++|+++||++|+...
T Consensus 6 vk~I~~~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~Isf~V~~~d~~~a~~~L~~~f~~~~ 82 (100)
T d2hmfa3 6 VKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDFG 82 (100)
T ss_dssp CCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEECSTTHHHHHHHHHHHHCCC-
T ss_pred eeEEEecCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceEEEEEeHHHHHHHHHHHHHHHHhhc
Confidence 356888999999999996 8899999999999999999999999999999999999999999999999999998653
|
| >d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=2.4e-14 Score=111.03 Aligned_cols=63 Identities=37% Similarity=0.634 Sum_probs=58.9
Q ss_pred eeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 476 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 476 ~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
+|+||+||. |...||+++|+|++|+ ++||.+|+|++|+++|||+|+++|.++|+++||++||+
T Consensus 1 la~IsvvG~gm~~~~gi~arif~~L~--~~nI~~i~~~~Se~~is~vV~~~d~~~Av~aLh~~Ffe 64 (64)
T d2j0wa3 1 LALVALIGNDLSKACGVGKEVFGVLE--PFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 64 (64)
T ss_dssp EEEEEEEESSCTTSSSHHHHHHSSCT--TSCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCcccCccHHHHHHHHHh--hCCCeEEEEEcCccEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 589999997 8889999999999996 57888999999999999999999999999999999984
|
| >d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.35 E-value=7.8e-13 Score=109.55 Aligned_cols=89 Identities=81% Similarity=1.138 Sum_probs=71.1
Q ss_pred ceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHH
Q 008621 384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEE 463 (559)
Q Consensus 384 ~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~ 463 (559)
..+|+|+.++|+++|++.|.+|.+.||+++++|+.|+++||||+||++|+.+|+|++++++........ ..+..+.++
T Consensus 2 ~~v~~I~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~Se~~is~~v~~~~~~~a~~~~--~~~~~~~~e 79 (91)
T d2cdqa2 2 SILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQ--QELDHVVEE 79 (91)
T ss_dssp CCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGSSSCCCH--HHHHHHHHH
T ss_pred CceEEEEEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEecCCeEEEEEchhHHHHHHHHH--HHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999988764211111 123333444
Q ss_pred HhhhceeecccceeEEEEEe
Q 008621 464 LEKIAIVNLLQHRSIISLIG 483 (559)
Q Consensus 464 L~~~~~v~~~~~~aiISIVG 483 (559)
| ++++.|+|++
T Consensus 80 l---------~~ia~VsVv~ 90 (91)
T d2cdqa2 80 L---------EKIAVVNLLK 90 (91)
T ss_dssp H---------TTTSEEEEEE
T ss_pred H---------hCCceEEEee
Confidence 4 4567777765
|
| >d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=3.1e-12 Score=105.89 Aligned_cols=88 Identities=35% Similarity=0.463 Sum_probs=71.5
Q ss_pred cceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHH
Q 008621 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVE 462 (559)
Q Consensus 383 ~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~ 462 (559)
++++|+|+.++|+++|++.|.+|.+.+|+++++|+.|+++||+|+|+++|+.+|||+++.++.... .+. -..+.+..
T Consensus 2 ~p~vk~I~~~~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~Se~~is~~v~~~~~~~a--v~~-L~~~~~~~ 78 (91)
T d2j0wa2 2 PPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTST--GDT-LLTQSLLM 78 (91)
T ss_dssp CCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEETTEEEEEECCCCCSST--TCC-SSCHHHHH
T ss_pred CCcceEEEEeCCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEEccCcEEEEEEchhHHHHH--HHH-HHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999999999998765320 000 01234556
Q ss_pred HHhhhceeecc
Q 008621 463 ELEKIAIVNLL 473 (559)
Q Consensus 463 ~L~~~~~v~~~ 473 (559)
+|++++.|++.
T Consensus 79 eL~~~~~V~ve 89 (91)
T d2j0wa2 79 ELSALCRVEVE 89 (91)
T ss_dssp HHHHHSCEEEE
T ss_pred HHhccCcEEEe
Confidence 77777777654
|
| >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=99.10 E-value=3.1e-10 Score=95.29 Aligned_cols=65 Identities=23% Similarity=0.445 Sum_probs=60.3
Q ss_pred ccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCchh
Q 008621 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW 446 (559)
Q Consensus 382 ~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~~ 446 (559)
+...|++|++.+|+++|++.|.+|.+.||+++++|+.|+++||+|+||+ +|+.+|+|++++++..
T Consensus 2 ~~~~vk~I~~~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~Isf~V~~~d~~ 68 (100)
T d2hmfa3 2 SDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVD 68 (100)
T ss_dssp CSSSCCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEECSTTHH
T ss_pred CCCceeEEEecCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceEEEEEeHHHHH
Confidence 4567999999999999999999999999999999999999999999998 6789999999998753
|
| >d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.9e-12 Score=106.03 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=69.5
Q ss_pred ceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCcccc
Q 008621 468 AIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLAN 545 (559)
Q Consensus 468 ~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~~~~~ 545 (559)
..+.+.+++++|+++|. |...+|+++|+|++|+++||||.||++ |+.+|||+|+.++.++|+++||.+|+..++.+
T Consensus 6 k~I~~~~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~--Se~~is~~v~~~~~~~av~~L~~~~~~~eL~~ 82 (91)
T d2j0wa2 6 RALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT--SEVSVALTLDTTGSTSTGDTLLTQSLLMELSA 82 (91)
T ss_dssp EEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEE--ETTEEEEEECCCCCSSTTCCSSCHHHHHHHHH
T ss_pred eEEEEeCCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEEc--cCcEEEEEEchhHHHHHHHHHHHHHHHHHHhc
Confidence 45778899999999997 888999999999999999999999997 89999999999999999999999988765544
|
| >d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.90 E-value=1.5e-10 Score=95.59 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=64.5
Q ss_pred ceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 468 AIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 468 ~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
..|...+|+++|+++|. |...||+++++|++|+++||||.||+| |+.+|||.|++++..++.+.+|+.+..
T Consensus 5 ~~I~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~--Se~~is~~v~~~~~~~a~~~~~~~~~~ 76 (91)
T d2cdqa2 5 TSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHV 76 (91)
T ss_dssp EEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGGSSSCCCHHHHHHH
T ss_pred EEEEEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe--cCCeEEEEEchhHHHHHHHHHHHHHHH
Confidence 45778899999999996 899999999999999999999999998 899999999999999888888876653
|
| >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=98.52 E-value=1.1e-07 Score=73.43 Aligned_cols=51 Identities=29% Similarity=0.599 Sum_probs=47.9
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCch
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~ 445 (559)
+++|++.|.+|.+.+|+++|+|+.|+++||||.||+ +|+.+|+|++++++.
T Consensus 1 Va~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~ 53 (67)
T d2hmfa2 1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDL 53 (67)
T ss_dssp EEEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGH
T ss_pred CEEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEEeHHHH
Confidence 578999999999999999999999999999999998 688999999998875
|
| >d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.12 E-value=1.4e-06 Score=68.49 Aligned_cols=49 Identities=14% Similarity=0.391 Sum_probs=44.9
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCch
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~ 445 (559)
++|++.| +|...+|+++|+|+.|++.||+|+||+ +|+.+|+|++++++.
T Consensus 2 a~IsvVG-~~~~~~Giaarif~aL~~~~InV~mIsqg~se~~Is~vV~~~d~ 52 (75)
T d2cdqa3 2 AIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEA 52 (75)
T ss_dssp EEEEEEE-CGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHH
T ss_pred cEEEEEC-CCCCChhHHHHHHHHHHHcCCceEEEEcCccceEEEEEEeHHHH
Confidence 6889999 799999999999999999999999999 568999999987754
|
| >d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=2.7e-06 Score=64.72 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=46.2
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+++|++.|.+|.+.+|+.+|+|+.|++.+|++.+.++|+.+|+|+|++++.
T Consensus 1 la~IsvvG~gm~~~~gi~arif~~L~~~nI~~i~~~~Se~~is~vV~~~d~ 51 (64)
T d2j0wa3 1 LALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDA 51 (64)
T ss_dssp EEEEEEEESSCTTSSSHHHHHHSSCTTSCCCEEEESSCTTEEEEEEEGGGH
T ss_pred CeEEEEECCCcccCccHHHHHHHHHhhCCCeEEEEEcCccEEEEEEcHHHH
Confidence 578999999999999999999999998888777777999999999998865
|
| >d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Atu0741-like domain: Hypothetical protein Atu0741 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.70 E-value=0.013 Score=43.98 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=47.8
Q ss_pred EEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008621 478 IISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 478 iISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
.+.+.|. -....|+++++.+.|+++||++..+++-.++. ++|++++.++|++.|.++
T Consensus 4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~~D~---ilVp~~~~~~A~~~L~~~ 61 (66)
T d1zhva2 4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDH---LLVRSNDLEKTADLLANA 61 (66)
T ss_dssp EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEE---EEEEGGGHHHHHHHHHHT
T ss_pred EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEeeeccE---EEEEHHHHHHHHHHHHHc
Confidence 3566665 35678999999999999999999999865555 689999999999999764
|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=93.60 E-value=0.099 Score=39.37 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=40.8
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHh
Q 008621 485 VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 538 (559)
Q Consensus 485 ~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f 538 (559)
+.+.||-++++.+.|.++||||..+....+...=.+++.-+|.++|.+.|.++=
T Consensus 6 v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~~a~~~L~~~G 59 (71)
T d2f06a1 6 CPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEKK 59 (71)
T ss_dssp EESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHTT
T ss_pred ecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHHHHHHHHHHCC
Confidence 678899999999999999999975333222223345666678999999998763
|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=93.29 E-value=0.089 Score=39.62 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=41.6
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc-eEEEEEEecccHHHHHHHHHHHhc
Q 008621 485 VQRSSLILEKAFRVLRRSGVNVQMISQGASK-VNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 485 ~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe-~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
+.+.||.++++...|++.||||..++.+.++ ..++-+ --++.++|.+.|.+.=|
T Consensus 10 ~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Ri-iv~~~e~a~~~L~~~g~ 64 (70)
T d2f06a2 10 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG-IVSDPDKAYKALKDNHF 64 (70)
T ss_dssp ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEE-EESCHHHHHHHHHHTTC
T ss_pred EeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEE-EECChHHHHHHHHHCCC
Confidence 4578999999999999999999987766544 344433 34578999999987644
|
| >d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: VC0802-like domain: Hypothetical protein VC0802 species: Vibrio cholerae [TaxId: 666]
Probab=93.18 E-value=0.077 Score=39.14 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 487 RSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 487 ~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
...|+.+++.++|+++||++..|+.--.+. ++|++++.++|++.|.
T Consensus 15 e~VGl~A~is~~La~~~Is~nvis~~~hDh---ifVp~~~~~~Al~~L~ 60 (64)
T d1zvpa2 15 EAVGLTAAFATKLAEHGISANVIAGYYHDH---IFVQKEKAQQALQALG 60 (64)
T ss_dssp CCSCHHHHHHHHHHHTTCCCEEEECSSCEE---EEEEGGGHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHCCCCeEEEEeeccce---EEEchhhHHHHHHHHH
Confidence 456899999999999999999999855555 7999999999999885
|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Thermotoga maritima [TaxId: 2336]
Probab=89.28 E-value=0.56 Score=35.79 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=39.0
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEecC------ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQASELDHVVEELEKI 467 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstSe------~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~ 467 (559)
.+.||+++|+...|.+.|+|++.++.++ ..++++++.++- .++++.++|++.
T Consensus 11 ~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~----------~i~qi~kQl~Kl 68 (78)
T d2fgca2 11 HNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDK----------TIEQIEKQAYKL 68 (78)
T ss_dssp ECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTT----------HHHHHHHHHTTS
T ss_pred eCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHH----------HHHHHHHHHhCC
Confidence 3689999999999999999999987332 447777765431 355677788774
|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=89.11 E-value=0.55 Score=36.17 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=36.3
Q ss_pred eeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecC--CceEEEEEEecc
Q 008621 476 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA--SKVNISLIVNDD 525 (559)
Q Consensus 476 ~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqga--Se~sIs~vV~~~ 525 (559)
.-+|+++| ...||+++++...|++.|+||.-+.|.. ....+.+.|..+
T Consensus 5 ~~vitv~G--~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~ 54 (86)
T d1u8sa1 5 HLVITAVG--TDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS 54 (86)
T ss_dssp EEEEEEEE--ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEe--CCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC
Confidence 45788888 4679999999999999999998776544 344455555544
|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: SP0238-like domain: UPF0237 protein SP0238 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.60 E-value=0.69 Score=35.20 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=31.9
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCce
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKV 516 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~ 516 (559)
++|+++| ...||+++++...|++.|+||.-++|...+.
T Consensus 3 ~vitv~g--~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~ 40 (83)
T d1zpva1 3 AIITVVG--KDKSGIVAGVSGKIAELGLNIDDISQTVLDE 40 (83)
T ss_dssp EEEEEEE--SCCTTHHHHHHHHHHHTTCEEEEEEEEEETT
T ss_pred EEEEEEc--CCCCCHHHHHHHHHHHCCCeEEEEEeEEeCC
Confidence 5788888 4689999999999999999999888864433
|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Nitrosomonas europaea [TaxId: 915]
Probab=87.34 E-value=0.24 Score=37.81 Aligned_cols=52 Identities=17% Similarity=0.386 Sum_probs=39.2
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEecC------ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQASELDHVVEELEKI 467 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstSe------~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~ 467 (559)
.+.||+++|+...|.+.|+|++.++.++ ..++++++.++ + .++++.++|++.
T Consensus 10 eN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~----~------~i~qi~kQL~Kl 67 (77)
T d2pc6a2 10 ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD----E------IVEQITKQLNKL 67 (77)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH----H------HHHHHHHHHHHS
T ss_pred ECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCH----H------HHHHHHHHHhCC
Confidence 3689999999999999999999987432 45778876543 1 455677788774
|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Escherichia coli [TaxId: 562]
Probab=87.33 E-value=0.32 Score=36.99 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=39.0
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEecC------ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQASELDHVVEELEKI 467 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstSe------~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~ 467 (559)
.+.||+++|+...|.+.|+|++.++.++ ..+++++..++ + .++++.++|++.
T Consensus 9 ~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~----~------~i~qi~kQL~Kl 66 (76)
T d2f1fa1 9 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDE----K------VLEQIEKQLHKL 66 (76)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCH----H------HHHHHHHHHHHS
T ss_pred ECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCH----H------HHHHHHHHHhCC
Confidence 3689999999999999999999987432 34677776553 1 455677778774
|
| >d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Atu0741-like domain: Hypothetical protein Atu0741 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=86.27 E-value=1.1 Score=32.98 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=37.9
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCc
Q 008621 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444 (559)
Q Consensus 397 lItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~ 444 (559)
.+++.+..-++..|+++++.+.|+++||++..+++.....-| |+.++
T Consensus 4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~~D~il-Vp~~~ 50 (66)
T d1zhva2 4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLL-VRSND 50 (66)
T ss_dssp EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEEEE-EEGGG
T ss_pred EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEeeeccEEE-EEHHH
Confidence 467766656788999999999999999999999988777655 55543
|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=80.37 E-value=3.4 Score=30.39 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=30.6
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe---cCcee-EEEeC
Q 008621 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT---SEVSL-SLTLD 441 (559)
Q Consensus 398 ItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist---Se~sI-s~~v~ 441 (559)
++|. +.+.||.++++.+.|+++|||+..++. .+..+ .+.++
T Consensus 6 isV~---~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~ 50 (70)
T d2f06a2 6 LSIF---LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS 50 (70)
T ss_dssp EEEE---ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred EEEE---EeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence 4554 357899999999999999999999863 34444 34554
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.31 E-value=2.5 Score=31.69 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=38.0
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEec---CCc-eEEEEEEecccHHHHHHHHHHH
Q 008621 486 QRSSLILEKAFRVLRRSGVNVQMISQG---ASK-VNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 486 ~~~~gv~~ri~~~L~~~~InI~~Isqg---aSe-~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
.+.||+++++.+.|+++||||..+..+ ..+ .-+.+-+++.-.+++++.|.+-
T Consensus 11 ~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~~ 66 (78)
T d1ygya3 11 VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAA 66 (78)
T ss_dssp SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCCccHHHHHHHHcC
Confidence 467999999999999999999875432 222 2345556777777888877653
|