Citrus Sinensis ID: 008624
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 559 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WWW9 | 558 | D-xylose-proton symporter | yes | no | 0.944 | 0.946 | 0.724 | 0.0 | |
| Q6AWX0 | 503 | D-xylose-proton symporter | no | no | 0.774 | 0.860 | 0.633 | 1e-152 | |
| Q8L6Z8 | 503 | D-xylose-proton symporter | no | no | 0.813 | 0.904 | 0.564 | 1e-142 | |
| O52733 | 457 | D-xylose-proton symporter | yes | no | 0.751 | 0.919 | 0.343 | 9e-57 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.681 | 0.833 | 0.347 | 4e-53 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.711 | 0.863 | 0.337 | 3e-51 | |
| O34718 | 473 | Major myo-inositol transp | no | no | 0.715 | 0.845 | 0.320 | 3e-51 | |
| Q0WUU6 | 526 | Probable polyol transport | no | no | 0.767 | 0.815 | 0.313 | 1e-49 | |
| Q9XIH7 | 511 | Putative polyol transport | no | no | 0.724 | 0.792 | 0.309 | 4e-48 | |
| Q9XIH6 | 511 | Putative polyol transport | no | no | 0.765 | 0.837 | 0.293 | 1e-46 |
| >sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/545 (72%), Positives = 437/545 (80%), Gaps = 17/545 (3%)
Query: 1 MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLL 57
MAF S+ F L H P+ + F S P S LS + F+S L+
Sbjct: 1 MAFAVSVQSHFAIRALKRDHFKNPSPRT---FCSCFKSRPDSSYLSLKERTCFVSKPGLV 57
Query: 58 APKFNVKTRKSVGAQREYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 116
++ + E++ GE +S SDA E+FSWSSVILPF+FPALGGLLFGYD
Sbjct: 58 TTRYRHIFQVGAETGGEFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLFGYD 115
Query: 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 176
IGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+REL
Sbjct: 116 IGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRREL 175
Query: 177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 236
IIAAVLY LG+L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISL
Sbjct: 176 IIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISL 235
Query: 237 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 296
KELFIVLGILLG+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQ
Sbjct: 236 KELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQ 295
Query: 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356
GKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGP
Sbjct: 296 GKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGP 355
Query: 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 416
NLKA IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+A
Sbjct: 356 NLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVA 415
Query: 417 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476
VAKVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 416 VAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 475
Query: 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFS--------IKMVSTW 528
WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK F+ I +VS
Sbjct: 476 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLL 535
Query: 529 FMILL 533
F+IL+
Sbjct: 536 FVILV 540
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6AWX0|XYLL2_ARATH D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 539 bits (1388), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/436 (63%), Positives = 340/436 (77%), Gaps = 3/436 (0%)
Query: 80 EDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFN 139
E E I + E +S + ILPFLFPALGGLL+GY+IGATS ATISLQSP LSG +W+N
Sbjct: 28 EREPLIKENHVPENYSVVAAILPFLFPALGGLLYGYEIGATSCATISLQSPSLSGISWYN 87
Query: 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 199
LS+V +GLV SGSLYGAL GSI+ ++IAD +GR++ELI+AA+LY +GAL TA AP VL
Sbjct: 88 LSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYLVGALVTALAPTYSVL 147
Query: 200 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 259
++GR++YG+ +GLAMH AP+YIAET PS IRG L+SLKE FIVLG++ GY +GS +N
Sbjct: 148 IIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEFFIVLGMVGGYGIGSLTVNVH 207
Query: 260 GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP 319
GWRYMY S PLA++MGIGMW LP SPRWLLLR +QGKG+++ +E AI +L LR
Sbjct: 208 SGWRYMYATSVPLAVIMGIGMWWLPASPRWLLLRVIQGKGNVENQREAAIKSLCCLRGPA 267
Query: 320 PGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSV 379
D +E Q+ + L L ++ E E +F E+FQG LKA IIGGGLVLFQQITGQPSV
Sbjct: 268 FVDSAAE-QVNEILAEL--TFVGEDKEVTFGELFQGKCLKALIIGGGLVLFQQITGQPSV 324
Query: 380 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 439
LYYA ILQ+AGFSAA DATRVS+++G+ KL+MT +AV +D LGRRPLL+GGV G+ +S
Sbjct: 325 LYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRPLLLGGVGGMVVS 384
Query: 440 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 499
L LL +YY P+VAV ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RGRG+SLAVL
Sbjct: 385 LFLLGSYYLFFSASPVVAVVALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGLSLAVLV 444
Query: 500 NFGSNAIVTFAFSPLK 515
NFG+NA+VTFAFSPLK
Sbjct: 445 NFGANALVTFAFSPLK 460
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L6Z8|XYLL1_ARATH D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 504 bits (1298), Expect = e-142, Method: Compositional matrix adjust.
Identities = 264/468 (56%), Positives = 341/468 (72%), Gaps = 13/468 (2%)
Query: 74 EYSAGG---EDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSP 130
+ S+GG E E + + + E +S + I PFLFPALG LLFGY+IGATS A +SL+SP
Sbjct: 19 DSSSGGITAEKEPLLKENHSPENYSVLAAIPPFLFPALGALLFGYEIGATSCAIMSLKSP 78
Query: 131 ELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT 190
LSG +W++LS+V +G++ SGSLYGAL+GSI+ +S+AD +GR++ELI+AA LY +GA+ T
Sbjct: 79 TLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKELILAAFLYLVGAIVT 138
Query: 191 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYF 250
AP +L++GR+ YG+GIGL MH AP+YIAET PSQIRG +ISLKE VLG++ GY
Sbjct: 139 VVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQIRGRMISLKEFSTVLGMVGGYG 198
Query: 251 VGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAIS 310
+GS I + GWRYMY P ++MG GM LP SPRWLLLRA+QG+G+ + ++ AI
Sbjct: 199 IGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPRWLLLRALQGQGNGENLQQAAIR 258
Query: 311 ALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLF 370
+L +LR D +E Q+ + L L S E E +F E+F+G LKA I GGLVLF
Sbjct: 259 SLCRLRGSVIADSAAE-QVNEILAEL--SLVGEDKEATFGELFRGKCLKALTIAGGLVLF 315
Query: 371 QQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI 430
QQITGQPSVLYYA ILQ+AGFSAAADATR+S+++G+ KLVMT ++V +D +GRRPLL+
Sbjct: 316 QQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRPLLL 375
Query: 431 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRG 490
GV G+ +SL LL +YY P VAV+ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RG
Sbjct: 376 CGVSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLSFGPIGWLMISEIFPLKLRG 435
Query: 491 RGISLAVLTNFGSNAIVTFAFSPLK-------VFIHFSIKMVSTWFMI 531
RGISLAVL NFG+NA+VTFAFSPLK +F F + V + F I
Sbjct: 436 RGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFI 483
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 156/454 (34%), Positives = 244/454 (53%), Gaps = 34/454 (7%)
Query: 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 162
+ F ALGGLLFGYD G SGA + +Q NL + Q G VVS L GA+LG+ +
Sbjct: 10 YFFGALGGLLFGYDTGVISGAILFIQKQ-------MNLGSWQQGWVVSAVLLGAILGAAI 62
Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 222
+ +D GR++ L+++A+++ +GAL +A++P L++ R++ G+ +G A P Y+A
Sbjct: 63 IGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLA 122
Query: 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282
E PS RGT+ SL +L ++ GILL Y GWR+M G +A A L+ +G
Sbjct: 123 ELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIPAALLFLGGLI 182
Query: 283 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 342
LP SPR+L+ G L E + + + K + ++++ Q +VS
Sbjct: 183 LPESPRFLV-----KSGHLDEAR-HVLDTMNKHDQVAVNKEINDIQESAKIVS------- 229
Query: 343 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVS 402
G + E+F + IIG GL +FQQ+ G +VLYYA I GF +A A
Sbjct: 230 ----GGWSELFGKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGFGVSA-ALLAH 284
Query: 403 VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG---FPLVAVS 459
+ IG+F +++T IAVA +D + R+ ++ G G+ +SL ++S K GG +++V
Sbjct: 285 IGIGIFNVIVTAIAVAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQTAAIISVI 344
Query: 460 ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH 519
AL +Y+ + ++GP+ W+M+ E+FPL RG G S A + N+ +N IV+ F L F
Sbjct: 345 ALTVYIAFFSATWGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLDF-- 402
Query: 520 FSIKMVSTWFMILLFD--WLVQFCRSCWEQRTFS 551
F + + IL F W VQ + +E R S
Sbjct: 403 FGTGSLFIGYGILCFASIWFVQ--KKVFETRNRS 434
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Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 143/412 (34%), Positives = 218/412 (52%), Gaps = 31/412 (7%)
Query: 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 162
+ F ALGG L+GYD G SGA + ++ L+A GLVVS L GA+LGS
Sbjct: 10 YFFGALGGALYGYDTGVISGAILFMKKE-------LGLNAFTEGLVVSSLLVGAILGSGA 62
Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 222
+ D GRK+ ++ AA+L+ +G L A AP GV+++ R++ GL +G + PLY++
Sbjct: 63 AGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLS 122
Query: 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282
E P RG L SL +L I +GILL Y V +A WR+M GL+A +LL+ IG+
Sbjct: 123 ELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADA-EAWRWMLGLAAVPSLLLLIGILF 181
Query: 283 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 342
+P SPRWL +E K + I L KLR G K +++I D +
Sbjct: 182 MPESPRWLFTNG-------EESKAKKI--LEKLR----GTKDIDQEIHDI------KEAE 222
Query: 343 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVS 402
++ EG E+F A I G GL QQ G +++YYA + GF +A +
Sbjct: 223 KQDEGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILG-T 281
Query: 403 VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA---VS 459
V IG ++MT +A+ +D +GR+PLL+ G G+ +SL++L+ P + V
Sbjct: 282 VGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAASWTTVI 341
Query: 460 ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 511
L +++ + +S+GP+ W+M+ E+FPL RG G ++ L IV+ +
Sbjct: 342 CLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTY 393
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 148/439 (33%), Positives = 233/439 (53%), Gaps = 41/439 (9%)
Query: 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 162
+ F ALGGLL+GYD G SGA + + + L+ + GLVVS L GA+ GS L
Sbjct: 11 YFFGALGGLLYGYDTGVISGALLFINND-------IPLTTLTEGLVVSMLLLGAIFGSAL 63
Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 222
+ +D GR++ + + ++++ +GAL A++ +G+L+ R++ GL +G + P+Y++
Sbjct: 64 SGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLS 123
Query: 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282
E P++IRGTL ++ L IV GILL Y V ++ WR+M GL+A A+L+ IG+
Sbjct: 124 EMAPTKIRGTLGTMNNLMIVTGILLAYIV-NYLFTPFEAWRWMVGLAAVPAVLLLIGIAF 182
Query: 283 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 342
+P SPRWL+ R GS +E RR + IE L +K +
Sbjct: 183 MPESPRWLVKR-----GSEEE------------ARRIMNITHDPKDIEMELAEMKQGEAE 225
Query: 343 EKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV 401
+K + L V + ++ +IG GL +FQQ G +V+YYA I AG +A A
Sbjct: 226 KKE--TTLGVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALG- 282
Query: 402 SVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG---GFPLVAV 458
++ IG+ ++M A+ +D +GR+ LLI G GI LSL LS LG + V
Sbjct: 283 TMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSASTAWMTV 342
Query: 459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK--- 515
L +Y+ YQ ++GP+ W+++ E+FP + RG L +N IV+ F PL
Sbjct: 343 VFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVF-PLMLSA 401
Query: 516 -----VFIHFSIKMVSTWF 529
VF+ FS+ + ++F
Sbjct: 402 MGIAWVFMVFSVICLLSFF 420
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 138/430 (32%), Positives = 229/430 (53%), Gaps = 30/430 (6%)
Query: 90 NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVV 149
N++ S + L GGLLFGYD G +GA + P+ NL+A GLV
Sbjct: 2 NKQGNQMSFLRTIILVSTFGGLLFGYDTGVLNGALPYMGEPD-----QLNLNAFTEGLVT 56
Query: 150 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 209
S L+GA LG++ ++DF GR++ ++ AV++ + + +AP + V+++ R + G+
Sbjct: 57 SSLLFGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIA 116
Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG----WRYM 265
+G A P Y+AE P + RG +++ EL IV G LL + + +G WR+M
Sbjct: 117 VGGASVTVPAYLAEMSPVESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFM 176
Query: 266 YGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLS 325
+++ AL + GM +P SPRWL+ KG KE A+ L K+R +K +
Sbjct: 177 LVIASLPALFLFFGMIRMPESPRWLV-----SKGR----KEDALRVLKKIR----DEKRA 223
Query: 326 ERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI-IGGGLVLFQQITGQPSVLYYAG 384
++++ + K EK+ L V P ++ + IG G+ + QQITG S++YY
Sbjct: 224 AAELQEIEFAFKKEDQLEKATFKDLSV---PWVRRIVFIGLGIAIVQQITGVNSIMYYGT 280
Query: 385 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 444
IL+++GF A A ++ GV ++ T++ + + +GRRP+L+ G+ G +LLL+
Sbjct: 281 EILRNSGFQTEA-ALIGNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIG 339
Query: 445 AYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF 501
+ +L G P V +S + ++ Q + P++WLM+SEIFPLR RG G+ + V +
Sbjct: 340 IFSLVLEGSPALPYVVLSLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMGVTVFCLW 399
Query: 502 GSNAIVTFAF 511
N V+F F
Sbjct: 400 MVNFAVSFTF 409
|
Major myo-inositol uptake transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 145/462 (31%), Positives = 224/462 (48%), Gaps = 33/462 (7%)
Query: 59 PKFNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIG 118
P +V +K+ + + A R ++A N + V+ F +L +L GYD+G
Sbjct: 17 PAVSVGNKKNKYQRMDSDAEESQNHREAEARNSRTRKY--VMACAFFASLNNVLLGYDVG 74
Query: 119 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII 178
SGA + +Q ++ VQ +++ +L GS+ +D +GRK + +
Sbjct: 75 VMSGAVLFIQQD-------LKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMAL 127
Query: 179 AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKE 238
AA+++ GA A AP VL++GR L G+GIGL + AP+YIAE P+ RG S E
Sbjct: 128 AALVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPE 187
Query: 239 LFIVLGILLGYFVGSFQINAVG---GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV 295
+FI LGILLGY V ++ + + WR M + ++ +G + +P SPRWL++
Sbjct: 188 IFINLGILLGY-VSNYAFSGLSVHISWRIMLAVGILPSVFIGFALCVIPESPRWLVM--- 243
Query: 296 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG 355
KG + +E L K R D+ ER E + L +++T+ +
Sbjct: 244 --KGRVDSARE----VLMKTNERD--DEAEERLAE---IQLAAAHTEGSEDRPVWRELLS 292
Query: 356 PN---LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVM 412
P+ K I+G G+ FQQITG + +YY+ IL+ AG +V +GV K V
Sbjct: 293 PSPVVRKMLIVGFGIQCFQQITGIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVF 352
Query: 413 TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGC---YQ 469
A +D +GR+PLL G+ L L LS LG L ALL G +
Sbjct: 353 ILFATFLIDSVGRKPLLYVSTIGMTLCLFCLSFTLTFLGQGTLGITLALLFVCGNVAFFS 412
Query: 470 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 511
I GP+ W++ SEIFPLR R + +L + N + +V +F
Sbjct: 413 IGMGPVCWVLTSEIFPLRLRAQASALGAVGNRVCSGLVAMSF 454
|
Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIH7|PLT1_ARATH Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 224/440 (50%), Gaps = 35/440 (7%)
Query: 90 NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVV 149
N+ ++++ IL ++ ++ GYDIG SGA+I ++ LS VQL +++
Sbjct: 21 NRSRYAFACAILA----SMTSIILGYDIGVMSGASIFIKDD-------LKLSDVQLEILM 69
Query: 150 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 209
+L+GS +D+LGR+ +++A + GAL +A ++VGR + G+G
Sbjct: 70 GILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIG 129
Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF--QINAVGGWRYMYG 267
+G AM AP+Y AE P+ RG L S E+FI +GILLGY F ++ GWR+M G
Sbjct: 130 VGYAMMIAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLG 189
Query: 268 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKG-----SLQEYKEQAISALGKLRRRP--P 320
+ A ++ + IG+ ++P SPRWL+L+ G KE+AIS L ++R P
Sbjct: 190 VGAVPSVFLAIGVLAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDDIKRAVGIP 249
Query: 321 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG-GLVLFQQITGQPSV 379
D + D ++ + + + K L V P+++ +I G+ QQ +G +V
Sbjct: 250 DD------MTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAV 303
Query: 380 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 439
+ Y+ I AG + D +V +GV K + + VD GRR LL+ + G+ LS
Sbjct: 304 VLYSPTIFSKAGLKSKNDQLLATVAVGVVKTLFIVVGTCVVDRFGRRALLLTSMGGMFLS 363
Query: 440 LLLLSAYYKILGGFP--------LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 491
L L ++ P +AV+ ++ +V + I GP++W+ SEIFP+R R +
Sbjct: 364 LTALGTSLTVINRNPGQTLKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQ 423
Query: 492 GISLAVLTNFGSNAIVTFAF 511
G SL V+ N + I+ F
Sbjct: 424 GASLGVMLNRLMSGIIGMTF 443
|
Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIH6|PLT2_ARATH Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 138/470 (29%), Positives = 230/470 (48%), Gaps = 42/470 (8%)
Query: 90 NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVV 149
N+ F+++ IL ++ ++ GYDIG SGA I ++ LS VQL +++
Sbjct: 21 NRSRFAFACAILA----SMTSIILGYDIGVMSGAAIFIKDD-------LKLSDVQLEILM 69
Query: 150 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 209
+L+GS +D++GR+ +++A + GAL +A ++VGR + G+G
Sbjct: 70 GILNIYSLIGSGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIG 129
Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF--QINAVGGWRYMYG 267
+G AM AP+Y E P+ RG L S E+FI +GILLGY F ++ GWR+M G
Sbjct: 130 VGYAMMIAPVYTTEVAPASSRGFLSSFPEIFINIGILLGYVSNYFFAKLPEHIGWRFMLG 189
Query: 268 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKG-----SLQEYKEQAISALGKLRRRP--P 320
+ A ++ + IG+ ++P SPRWL+++ G KE+AIS L ++R P
Sbjct: 190 IGAVPSVFLAIGVLAMPESPRWLVMQGRLGDAFKVLDKTSNTKEEAISRLNDIKRAVGIP 249
Query: 321 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG-GLVLFQQITGQPSV 379
D + D ++ + + + K L V P+++ +I G+ QQ +G +V
Sbjct: 250 DD------MTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFSQQASGIDAV 303
Query: 380 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 439
+ Y+ I AG + D +V +GV K + + VD GRR LL+ + G+ S
Sbjct: 304 VLYSPTIFSRAGLKSKNDQLLATVAVGVVKTLFIVVGTCLVDRFGRRALLLTSMGGMFFS 363
Query: 440 LLLLSAYYKILGGFP--------LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 491
L L ++ P +AV+ ++ +V + + GP++W+ SEIFP+R R +
Sbjct: 364 LTALGTSLTVIDRNPGQTLKWAIGLAVTTVMTFVATFSLGAGPVTWVYASEIFPVRLRAQ 423
Query: 492 GISLAVLTNFGSNAIVTFAFSPLK-------VFIHFSIKMVSTWFMILLF 534
G SL V+ N + I+ F L F+ F+ V+ W F
Sbjct: 424 GASLGVMLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAVAAWVFFFTF 473
|
Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 559 | ||||||
| 356542274 | 560 | PREDICTED: D-xylose-proton symporter-lik | 0.901 | 0.9 | 0.766 | 0.0 | |
| 356538970 | 552 | PREDICTED: D-xylose-proton symporter-lik | 0.906 | 0.918 | 0.758 | 0.0 | |
| 388498682 | 563 | unknown [Lotus japonicus] | 0.849 | 0.843 | 0.782 | 0.0 | |
| 297796853 | 559 | hypothetical protein ARALYDRAFT_919128 [ | 0.949 | 0.949 | 0.727 | 0.0 | |
| 42568650 | 558 | D-xylose-proton symporter-like 3 [Arabid | 0.944 | 0.946 | 0.724 | 0.0 | |
| 110740547 | 558 | D-xylose-H+ symporter - like protein [Ar | 0.944 | 0.946 | 0.722 | 0.0 | |
| 255558992 | 505 | sugar transporter, putative [Ricinus com | 0.813 | 0.900 | 0.863 | 0.0 | |
| 449455084 | 585 | PREDICTED: D-xylose-proton symporter-lik | 0.940 | 0.899 | 0.730 | 0.0 | |
| 225434857 | 561 | PREDICTED: putative vacuolar glucose tra | 0.896 | 0.893 | 0.788 | 0.0 | |
| 147856330 | 606 | hypothetical protein VITISV_039113 [Viti | 0.896 | 0.826 | 0.762 | 0.0 |
| >gi|356542274|ref|XP_003539594.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/514 (76%), Positives = 436/514 (84%), Gaps = 10/514 (1%)
Query: 9 PPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLS----TKPLLAPKFNVK 64
P F N H + KS S+P + N+ L+ T PLL K
Sbjct: 12 PLFNFNPLHHRRIKRPKSLL------SSPRNSPRLVSSINDHLALTRVTYPLLQSHSAPK 65
Query: 65 TRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGAT 124
R VG Q+EYS G ES +SDAT QE FSWSSV+LPFLFPALGGLLFGYDIGATSGAT
Sbjct: 66 RRFHVGVQKEYSDGESSESIVSDATYQEEFSWSSVVLPFLFPALGGLLFGYDIGATSGAT 125
Query: 125 ISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 184
ISLQSPELSG +WFNLSA+QLGLVVSGSLYGALLGS++ ++IADFLGRK++LI AA+LY
Sbjct: 126 ISLQSPELSGISWFNLSAIQLGLVVSGSLYGALLGSLVAFAIADFLGRKKQLITAALLYL 185
Query: 185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 244
G + TAYAP LGVLL GRL+YGLGIGLAMHGAPLYIAETCPSQIRGTL+SLKELFIVLG
Sbjct: 186 FGGVITAYAPELGVLLAGRLIYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLG 245
Query: 245 ILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEY 304
ILLGYFVGSF I VGGWR+MYG SAP+A+LMG+GMW+LP SPRWLLLRAVQGKGS Q+
Sbjct: 246 ILLGYFVGSFLIETVGGWRFMYGFSAPVAVLMGLGMWTLPNSPRWLLLRAVQGKGSFQDL 305
Query: 305 KEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 364
KEQAI++L KLR RPPGDK SE+QIE+TLVSLKS Y D++SEG+FLEVFQGPNLKAFIIG
Sbjct: 306 KEQAIASLSKLRGRPPGDKESEKQIEETLVSLKSVYADQESEGNFLEVFQGPNLKAFIIG 365
Query: 365 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 424
GGLVLFQQITGQPSVLYYAGPILQSAGFSAA+DAT+VSVVIG+FKL+MTWIAV KVDDLG
Sbjct: 366 GGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLG 425
Query: 425 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF 484
RRPLLIGGV GIALSL+LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSE+F
Sbjct: 426 RRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEVF 485
Query: 485 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFI 518
PLRTRG+GISLAVLTNF SNA+VTFAFSPLK F+
Sbjct: 486 PLRTRGKGISLAVLTNFASNAVVTFAFSPLKEFL 519
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538970|ref|XP_003537973.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/522 (75%), Positives = 435/522 (83%), Gaps = 15/522 (2%)
Query: 1 MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLS----TKPL 56
MA T+ +LN H Q T KS +NP S NN L+ T PL
Sbjct: 1 MASTTLFSFRLSLNPLHHQQTTRPKSLL--SSPRTNPRLVS----SINNHLALTRVTYPL 54
Query: 57 LAPKFNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 116
L K R V YS G ES +SDAT QE FSWSSVILPFLFPALGGLLFGYD
Sbjct: 55 LQSHSAPKRRFHV-----YSDGESSESLVSDATYQEEFSWSSVILPFLFPALGGLLFGYD 109
Query: 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 176
IGATSGATISLQSPELSG +WF LSA+QLGLVVSGSLYGALLGS++ ++IADFLGRK++L
Sbjct: 110 IGATSGATISLQSPELSGISWFKLSAIQLGLVVSGSLYGALLGSLVAFAIADFLGRKKQL 169
Query: 177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 236
I AA+LY G + TAYAP LGVLL GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL+SL
Sbjct: 170 ITAALLYLFGGVITAYAPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSL 229
Query: 237 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 296
KELFIVLGILLGYFVGSF I VGGWR+MYG SAP+A+LMG+GM +LP SPRWLLLRAVQ
Sbjct: 230 KELFIVLGILLGYFVGSFLIETVGGWRFMYGFSAPVAVLMGLGMLTLPNSPRWLLLRAVQ 289
Query: 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356
GKGS Q+ KE+AI +L KLR RPPGDK SERQ+E+TLVSLKS+Y D++SEG+FLEVFQGP
Sbjct: 290 GKGSFQDLKEKAIFSLSKLRGRPPGDKESERQVEETLVSLKSAYADKESEGNFLEVFQGP 349
Query: 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 416
NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAA+DAT+VSVVIG+FKL+MTWIA
Sbjct: 350 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIA 409
Query: 417 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476
V KVDDLGRRPLLIGGV GIALSL+LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 410 VLKVDDLGRRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 469
Query: 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFI 518
WLMVSE+FPLRTRG+GISLAVLTNF SNA+VTFAFSPLK F+
Sbjct: 470 WLMVSEVFPLRTRGKGISLAVLTNFASNAVVTFAFSPLKEFL 511
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388498682|gb|AFK37407.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/493 (78%), Positives = 430/493 (87%), Gaps = 18/493 (3%)
Query: 53 TKPLL----AP--KFNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFP 106
T PLL AP +F+V+++K Q+ YSAGG+ E SDA QE FS SSVILPFLFP
Sbjct: 55 TYPLLPSSSAPNSRFHVRSQK----QKVYSAGGKSEPLASDAKYQEEFSLSSVILPFLFP 110
Query: 107 ALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSI 166
ALGGLLFGYDIGATSGATISLQSPELSG TWFNLS++QLGLVVSGSLYGALLGSIL +++
Sbjct: 111 ALGGLLFGYDIGATSGATISLQSPELSGITWFNLSSIQLGLVVSGSLYGALLGSILAFAV 170
Query: 167 ADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCP 226
ADFLGRKR+LI+AA+LY LG TA AP L VLL GRLLYGLGIGLAMHGAPLYIAETCP
Sbjct: 171 ADFLGRKRQLIVAALLYILGGAITAAAPELNVLLAGRLLYGLGIGLAMHGAPLYIAETCP 230
Query: 227 SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 286
SQIRGTL+SLKELFIVLGIL GYFVGSFQI++VGGWR+MYG SAP+A+LMG+GMW+LP S
Sbjct: 231 SQIRGTLVSLKELFIVLGILGGYFVGSFQISSVGGWRFMYGFSAPVAVLMGLGMWTLPAS 290
Query: 287 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 346
PRWLLL+AVQGKGS Q+ KE+AI +L KLR RPPGDK SERQIE+TLVSLKS+Y D++SE
Sbjct: 291 PRWLLLKAVQGKGSFQDLKEKAIFSLSKLRGRPPGDKESERQIEETLVSLKSAYKDQESE 350
Query: 347 GSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG 406
G+FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAG ILQSAGFSAA+DAT+VSVVIG
Sbjct: 351 GNFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGSILQSAGFSAASDATKVSVVIG 410
Query: 407 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVG 466
+FKL MTW+AV KVDDLGRRPLLI GV GI LSL LLSAYYK LGGFPLVAV ALLLYVG
Sbjct: 411 LFKLQMTWVAVLKVDDLGRRPLLIAGVSGIGLSLGLLSAYYKFLGGFPLVAVGALLLYVG 470
Query: 467 CYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-------VFIH 519
CYQISFGPISWLMVSE FP+RTRGRGISLAVLTNF SNA+VTFAFSPLK +F+
Sbjct: 471 CYQISFGPISWLMVSETFPIRTRGRGISLAVLTNFASNAVVTFAFSPLKELLGAENLFLL 530
Query: 520 F-SIKMVSTWFMI 531
F +I +V+ F+I
Sbjct: 531 FGAISLVALLFVI 543
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796853|ref|XP_002866311.1| hypothetical protein ARALYDRAFT_919128 [Arabidopsis lyrata subsp. lyrata] gi|297312146|gb|EFH42570.1| hypothetical protein ARALYDRAFT_919128 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/543 (72%), Positives = 435/543 (80%), Gaps = 12/543 (2%)
Query: 1 MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTK-PLLAP 59
MAF S+ F + Q S C + S S K L +K L+
Sbjct: 1 MAFAVSVQSHFAIRDLKRDQFKKNPSPRTSCSCFKSRSDSSYLSLKERTCLVSKLGLVTT 60
Query: 60 KFNVKTRKSVGAQREYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIG 118
++ K + G E + GGE +S SDA E+FSWSSVILPF+FPALGGLLFGYDIG
Sbjct: 61 RYRAKFQVGAGTGGELADGGEVADSIASDAL--ESFSWSSVILPFIFPALGGLLFGYDIG 118
Query: 119 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII 178
ATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+RELII
Sbjct: 119 ATSGATLSLQSPVLSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELII 178
Query: 179 AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKE 238
AAVLY LG+L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKE
Sbjct: 179 AAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKE 238
Query: 239 LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGK 298
LFIVLGILLG+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQGK
Sbjct: 239 LFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGK 298
Query: 299 GSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 358
G LQEYKE+A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNL
Sbjct: 299 GQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNL 358
Query: 359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVA 418
KA IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVA
Sbjct: 359 KALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVA 418
Query: 419 KVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL 478
KVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWL
Sbjct: 419 KVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWL 478
Query: 479 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFS--------IKMVSTWFM 530
MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK F+ I +VS F+
Sbjct: 479 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFV 538
Query: 531 ILL 533
IL+
Sbjct: 539 ILV 541
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42568650|ref|NP_200733.2| D-xylose-proton symporter-like 3 [Arabidopsis thaliana] gi|117940085|sp|Q0WWW9.2|XYLL3_ARATH RecName: Full=D-xylose-proton symporter-like 3, chloroplastic; Flags: Precursor gi|9759246|dbj|BAB09770.1| sugar transporter-like protein [Arabidopsis thaliana] gi|51536478|gb|AAU05477.1| At5g59250 [Arabidopsis thaliana] gi|56381949|gb|AAV85693.1| At5g59250 [Arabidopsis thaliana] gi|332009779|gb|AED97162.1| D-xylose-proton symporter-like 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/545 (72%), Positives = 437/545 (80%), Gaps = 17/545 (3%)
Query: 1 MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLL 57
MAF S+ F L H P+ + F S P S LS + F+S L+
Sbjct: 1 MAFAVSVQSHFAIRALKRDHFKNPSPRT---FCSCFKSRPDSSYLSLKERTCFVSKPGLV 57
Query: 58 APKFNVKTRKSVGAQREYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 116
++ + E++ GE +S SDA E+FSWSSVILPF+FPALGGLLFGYD
Sbjct: 58 TTRYRHIFQVGAETGGEFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLFGYD 115
Query: 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 176
IGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+REL
Sbjct: 116 IGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRREL 175
Query: 177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 236
IIAAVLY LG+L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISL
Sbjct: 176 IIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISL 235
Query: 237 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 296
KELFIVLGILLG+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQ
Sbjct: 236 KELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQ 295
Query: 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356
GKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGP
Sbjct: 296 GKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGP 355
Query: 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 416
NLKA IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+A
Sbjct: 356 NLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVA 415
Query: 417 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476
VAKVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 416 VAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 475
Query: 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFS--------IKMVSTW 528
WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK F+ I +VS
Sbjct: 476 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLL 535
Query: 529 FMILL 533
F+IL+
Sbjct: 536 FVILV 540
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740547|dbj|BAE98379.1| D-xylose-H+ symporter - like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/545 (72%), Positives = 437/545 (80%), Gaps = 17/545 (3%)
Query: 1 MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLL 57
MAF S+ F L H P+ + F S P S LS + F+S L+
Sbjct: 1 MAFAVSVQSHFAIRALKRDHFKNPSPRT---FCSCFKSRPDSSYLSLKERTCFVSKPGLV 57
Query: 58 APKFNVKTRKSVGAQREYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 116
++ + +++ GE +S SDA E+FSWSSVILPF+FPALGGLLFGYD
Sbjct: 58 TTRYRHIFQVGAETGGDFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLFGYD 115
Query: 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 176
IGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+REL
Sbjct: 116 IGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRREL 175
Query: 177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 236
IIAAVLY LG+L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISL
Sbjct: 176 IIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISL 235
Query: 237 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 296
KELFIVLGILLG+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQ
Sbjct: 236 KELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQ 295
Query: 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356
GKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGP
Sbjct: 296 GKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGP 355
Query: 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 416
NLKA IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+A
Sbjct: 356 NLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVA 415
Query: 417 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476
VAKVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 416 VAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 475
Query: 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFS--------IKMVSTW 528
WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK F+ I +VS
Sbjct: 476 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLL 535
Query: 529 FMILL 533
F+IL+
Sbjct: 536 FVILV 540
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558992|ref|XP_002520519.1| sugar transporter, putative [Ricinus communis] gi|223540361|gb|EEF41932.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/455 (86%), Positives = 422/455 (92%)
Query: 61 FNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGAT 120
F R +G EYSAG E ES + D++ QEAFSWSSVILPFLFPALGGLLFGYDIGAT
Sbjct: 7 FISSPRPRLGLSVEYSAGEEAESVVPDSSPQEAFSWSSVILPFLFPALGGLLFGYDIGAT 66
Query: 121 SGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAA 180
SGATISLQSPELSGTTWFNLSA+QLGLVVSGSLYGALLGS+LVY IADFLGR+RELIIAA
Sbjct: 67 SGATISLQSPELSGTTWFNLSAIQLGLVVSGSLYGALLGSLLVYPIADFLGRRRELIIAA 126
Query: 181 VLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELF 240
VLY LG L TAYAP LG+LL GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELF
Sbjct: 127 VLYMLGGLITAYAPSLGILLGGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELF 186
Query: 241 IVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGS 300
IVLGIL+GYFVGSF+I+AVGGWRYMYGL AP+AL+MG+GM SLPPSPRWLLLRAVQG+ S
Sbjct: 187 IVLGILMGYFVGSFEISAVGGWRYMYGLGAPIALIMGLGMLSLPPSPRWLLLRAVQGRAS 246
Query: 301 LQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 360
LQEYKE+A+ AL KLR RP GDK SE+QIEDTLVSLKS+Y++E+SEGS LEVFQGP+LKA
Sbjct: 247 LQEYKEKAVLALSKLRGRPLGDKESEKQIEDTLVSLKSAYSEEESEGSILEVFQGPSLKA 306
Query: 361 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKV 420
FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSV+IG+FKLVMTWIAV KV
Sbjct: 307 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVIIGLFKLVMTWIAVLKV 366
Query: 421 DDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMV 480
DDLGRRPLLIGGV GIALSL LLSAYYK+LGGFP+VAV+ALLLYVG YQISFGPISWLMV
Sbjct: 367 DDLGRRPLLIGGVGGIALSLFLLSAYYKVLGGFPVVAVAALLLYVGSYQISFGPISWLMV 426
Query: 481 SEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515
SEIFPLRTRG+GISLAVLTNFGSNAIVTFAFSPLK
Sbjct: 427 SEIFPLRTRGKGISLAVLTNFGSNAIVTFAFSPLK 461
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455084|ref|XP_004145283.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Cucumis sativus] gi|449470902|ref|XP_004153144.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/550 (73%), Positives = 453/550 (82%), Gaps = 24/550 (4%)
Query: 1 MAFTSSIGPPFTLNLPH-----LHQPTSQKSFYFRCKANSNPSSKSL-SPFKANNFLSTK 54
MAF+ I P FT H H SQ F +S P++ L S F AN S
Sbjct: 23 MAFSLPIRPLFTPKPSHSYTRKAHLKASQVLF------SSTPTTPLLVSSFTANLEASFH 76
Query: 55 PLLAPKFNVKTR--KSVGAQREYSAGGEDESR--ISDATNQEAFSWSSVILPFLFPALGG 110
++ K R VG R + GE+E++ S+A N+E FSWSSVILPFLFPALGG
Sbjct: 77 NPISSSSVSKLRLIPKVGGDRADYSSGEEETKSVDSEAANEEEFSWSSVILPFLFPALGG 136
Query: 111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL 170
LLFGYDIGATSGAT+SLQSPELSGT+WFNLSAVQLGLVVSGSLYGALLGS+LVY IADFL
Sbjct: 137 LLFGYDIGATSGATLSLQSPELSGTSWFNLSAVQLGLVVSGSLYGALLGSLLVYPIADFL 196
Query: 171 GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR 230
GR+RELIIAA LYA+G+LTTAY+P LG LL GRLLYGLGIGLAMHGAPLYIAETCPS+IR
Sbjct: 197 GRRRELIIAAGLYAIGSLTTAYSPDLGFLLAGRLLYGLGIGLAMHGAPLYIAETCPSKIR 256
Query: 231 GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWL 290
GTL+SLKELFIVLGIL+GY GS QINAVGGWRYMYGLSAP+A +MG+GMW LPPSPRWL
Sbjct: 257 GTLVSLKELFIVLGILMGYLFGSLQINAVGGWRYMYGLSAPVAFMMGLGMWLLPPSPRWL 316
Query: 291 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 350
LLRA QGK Q+ KE+AI+AL KLR RPPGDK+SE+QIE+T +SLKS+Y++++SEGS
Sbjct: 317 LLRAAQGKAPSQDSKEEAIAALSKLRGRPPGDKVSEKQIEETFLSLKSAYSEQESEGSIW 376
Query: 351 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKL 410
EV QGP+LKAFIIGGGLVLFQQITGQPSVLYYAGPILQ+AGF+AA DATRVSVVIGVFKL
Sbjct: 377 EVLQGPSLKAFIIGGGLVLFQQITGQPSVLYYAGPILQNAGFAAATDATRVSVVIGVFKL 436
Query: 411 VMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQI 470
+MTW+AV KVDDLGRRPLLIGGV GIALSLLLLSAYYK LGGFP+VAV ALLLYVGCYQI
Sbjct: 437 LMTWVAVLKVDDLGRRPLLIGGVSGIALSLLLLSAYYKFLGGFPIVAVGALLLYVGCYQI 496
Query: 471 SFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-------VFIHF-SI 522
SFGPISWLMVSEIFPLRTRG+GISLAVLTNFGSNAIVTFAFSPLK +F+ F +I
Sbjct: 497 SFGPISWLMVSEIFPLRTRGKGISLAVLTNFGSNAIVTFAFSPLKELLGAENLFLLFGAI 556
Query: 523 KMVSTWFMIL 532
++S F++L
Sbjct: 557 ALLSLLFVVL 566
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434857|ref|XP_002280634.1| PREDICTED: putative vacuolar glucose transporter [Vitis vinifera] gi|310877894|gb|ADP37178.1| putative vacuolar glucose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/511 (78%), Positives = 437/511 (85%), Gaps = 10/511 (1%)
Query: 11 FTLNLPH----LHQPTSQKSFYFRCKANSNPSSKSL--SPFKANNFLSTKPLLAPKFNVK 64
F L L H LH P +S +F K NS+PSS S FK+ ++ KP L +
Sbjct: 11 FNLKLSHSHPALHHPKHSQSLFF--KFNSHPSSPFFYGSQFKSQTYMPPKPPLLQSSRLV 68
Query: 65 TRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGAT 124
+ VGAQ E S+G E S SD QE FSWSSV+LPFLFPALGGLLFGYDIGATSGAT
Sbjct: 69 FK--VGAQSEGSSGEETRSLDSDVKYQEVFSWSSVVLPFLFPALGGLLFGYDIGATSGAT 126
Query: 125 ISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 184
ISLQSPELSG TWF LSAVQLGLVVSGSLYGALLGSILVY IADFLGR+ ELI AA+LYA
Sbjct: 127 ISLQSPELSGITWFELSAVQLGLVVSGSLYGALLGSILVYPIADFLGRRGELITAAILYA 186
Query: 185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 244
LG L TA AP L VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKEL IVLG
Sbjct: 187 LGGLITASAPELDVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELLIVLG 246
Query: 245 ILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEY 304
ILLGYFVGSF+IN VGGWRYMYGLSAP+A LMG+G+W+LPPSPRWLLLRAVQGKGSLQE
Sbjct: 247 ILLGYFVGSFEINEVGGWRYMYGLSAPIASLMGLGLWTLPPSPRWLLLRAVQGKGSLQEN 306
Query: 305 KEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 364
KE+AI AL KLR RP GDK+S+ QIE TL SLKS+YTD++SEGSFLEVFQGP+LKAFIIG
Sbjct: 307 KEKAIHALSKLRGRPAGDKVSDMQIEHTLASLKSAYTDQESEGSFLEVFQGPSLKAFIIG 366
Query: 365 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 424
GGLVL QQITGQPSVLY+AG ILQ+AGFSAA+DATRVSV+IG FKL+MT IAV KVDD+G
Sbjct: 367 GGLVLSQQITGQPSVLYFAGSILQTAGFSAASDATRVSVLIGFFKLLMTGIAVLKVDDIG 426
Query: 425 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF 484
RRPLLIGGV G+ALSLLLLSAYYK LGGFP+VAV+ALLLYVGCYQISFGPISWLMVSEIF
Sbjct: 427 RRPLLIGGVGGLALSLLLLSAYYKFLGGFPVVAVAALLLYVGCYQISFGPISWLMVSEIF 486
Query: 485 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515
PLRTRGRGISLAVLTNFGSNAIVTFAFSPL+
Sbjct: 487 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLE 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147856330|emb|CAN83894.1| hypothetical protein VITISV_039113 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/527 (76%), Positives = 437/527 (82%), Gaps = 26/527 (4%)
Query: 11 FTLNLPH----LHQPTSQKSFYFRCKANSNPSSKSL--SPFKANNFLSTKPLLAPKFNVK 64
F L L H LH P +S +F K NS+PSS S FK+ ++ KP L +
Sbjct: 11 FNLKLSHSHPALHHPKHSQSLFF--KFNSHPSSPFFYGSQFKSQTYMPPKPPLLQSSRLV 68
Query: 65 TRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGAT 124
+ VGAQ E S+G E S SD QE FSWSSV+LPFLFPALGGLLFGYDIGATSGAT
Sbjct: 69 FK--VGAQSEGSSGEETRSLDSDVKYQEVFSWSSVVLPFLFPALGGLLFGYDIGATSGAT 126
Query: 125 ISLQ----------------SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD 168
ISLQ SPELSG TWF LSAVQLGLVVSGSLYGALLGSILVY IAD
Sbjct: 127 ISLQRPVLLKLIFIILTILKSPELSGITWFELSAVQLGLVVSGSLYGALLGSILVYPIAD 186
Query: 169 FLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ 228
FLGR+ ELI AA+LYALG L TA AP L VLLVGRLLYGJGIGLAMHGAPLYIAETCPSQ
Sbjct: 187 FLGRRGELITAAILYALGGLITASAPELDVLLVGRLLYGJGIGLAMHGAPLYIAETCPSQ 246
Query: 229 IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPR 288
IRGTLISLKEL IVLGILLGYFVGSF+IN VGGWRYMYGLSAP+A LMG+G+W+LPPSPR
Sbjct: 247 IRGTLISLKELLIVLGILLGYFVGSFEINEVGGWRYMYGLSAPIASLMGLGLWTLPPSPR 306
Query: 289 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS 348
WLLLRAVQGKGSLQE KE+AI AL KLR RP GDK+S+ QIE TL SLKS+YTD++SEGS
Sbjct: 307 WLLLRAVQGKGSLQENKEKAIHALSKLRGRPAGDKVSDMQIEHTLASLKSAYTDQESEGS 366
Query: 349 FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVF 408
FLEVFQGP+LKAFIIGGGLVL QQITGQPSVLY+AG ILQ+AGFSAA+DATRVSV+IG F
Sbjct: 367 FLEVFQGPSLKAFIIGGGLVLSQQITGQPSVLYFAGSILQTAGFSAASDATRVSVLIGFF 426
Query: 409 KLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCY 468
KL+MT IAV KVDD+GRRPLLIGGV G+ALSLLLLSAYYK LGGFP+VAV+ALLLYVGCY
Sbjct: 427 KLLMTGIAVLKVDDIGRRPLLIGGVGGLALSLLLLSAYYKFLGGFPVVAVAALLLYVGCY 486
Query: 469 QISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515
QISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL+
Sbjct: 487 QISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLE 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 559 | ||||||
| TAIR|locus:2168494 | 558 | AT5G59250 [Arabidopsis thalian | 0.939 | 0.940 | 0.613 | 4.4e-155 | |
| TAIR|locus:2148201 | 503 | AT5G17010 [Arabidopsis thalian | 0.711 | 0.791 | 0.548 | 7.2e-107 | |
| TAIR|locus:2097780 | 503 | VGT1 "vacuolar glucose transpo | 0.796 | 0.884 | 0.475 | 1.5e-99 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.667 | 0.805 | 0.325 | 1.5e-42 | |
| UNIPROTKB|F1MIV2 | 621 | SLC2A12 "Solute carrier family | 0.527 | 0.475 | 0.320 | 7e-34 | |
| UNIPROTKB|Q5J316 | 621 | SLC2A12 "Solute carrier family | 0.527 | 0.475 | 0.314 | 2.3e-33 | |
| UNIPROTKB|Q8TD20 | 617 | SLC2A12 "Solute carrier family | 0.527 | 0.478 | 0.314 | 5.5e-33 | |
| UNIPROTKB|F1P4J7 | 561 | SLC2A12 "Uncharacterized prote | 0.529 | 0.527 | 0.305 | 5.9e-33 | |
| UNIPROTKB|F1PA43 | 614 | SLC2A12 "Uncharacterized prote | 0.527 | 0.480 | 0.308 | 7.1e-32 | |
| MGI|MGI:3052471 | 622 | Slc2a12 "solute carrier family | 0.527 | 0.474 | 0.320 | 1.3e-31 |
| TAIR|locus:2168494 AT5G59250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
Identities = 336/548 (61%), Positives = 377/548 (68%)
Query: 1 MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKA-NSNPSSKSLSPFKANNFLSTKPL 56
MAF S+ F L H P S ++F C S P S LS + F+S L
Sbjct: 1 MAFAVSVQSHFAIRALKRDHFKNP-SPRTF---CSCFKSRPDSSYLSLKERTCFVSKPGL 56
Query: 57 LAPKFNVKTRKSVGAQR--EYSAGGE-DESRISDATNQEAFSWSSVIXXXXXXXXXXXXX 113
+ ++ + VGA+ E++ GE +S SDA E+FSWSSVI
Sbjct: 57 VTTRY--RHIFQVGAETGGEFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLF 112
Query: 114 XYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
YDIGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+
Sbjct: 113 GYDIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRR 172
Query: 174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
RELII AMHGAPLYIAETCPSQIRGTL
Sbjct: 173 RELIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTL 232
Query: 234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
ISLKELFIVLGILLG+ VGSFQI+ VGGWRYMYG P+ALLMG+GM
Sbjct: 233 ISLKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLR 292
Query: 294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
AVQGKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVF
Sbjct: 293 AVQGKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVF 352
Query: 354 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMT 413
QGPNLKA IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MT
Sbjct: 353 QGPNLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMT 412
Query: 414 WIAVAKVDDLGRRPLLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFG 473
W+AVAKVDDLGRRPLLIGGV GFPLVAV ALLLYVGCYQISFG
Sbjct: 413 WVAVAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFG 472
Query: 474 PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-------VFIHFS-IKMV 525
PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK +F+ F I +V
Sbjct: 473 PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALV 532
Query: 526 STWFMILL 533
S F+IL+
Sbjct: 533 SLLFVILV 540
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| TAIR|locus:2148201 AT5G17010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
Identities = 220/401 (54%), Positives = 269/401 (67%)
Query: 115 YDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKR 174
Y+IGATS ATISLQSP LSG +W+NLS+V +GLV SGSLYGAL GSI+ ++IAD +GR++
Sbjct: 63 YEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRK 122
Query: 175 ELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLI 234
ELI+ AMH AP+YIAET PS IRG L+
Sbjct: 123 ELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLV 182
Query: 235 SLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXA 294
SLKE FIVLG++ GY +GS +N GWRYMY S PLA++MGIGM
Sbjct: 183 SLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRWLLLRV 242
Query: 295 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 354
+QGKG+++ +E AI +L LR D +E Q+ + L L ++ E E +F E+FQ
Sbjct: 243 IQGKGNVENQREAAIKSLCCLRGPAFVDSAAE-QVNEILAEL--TFVGEDKEVTFGELFQ 299
Query: 355 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTW 414
G LKA IIGGGLVLFQQITGQPSVLYYA ILQ+AGFSAA DATRVS+++G+ KL+MT
Sbjct: 300 GKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTG 359
Query: 415 IAVAKVDDLGRRPLLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGP 474
+AV +D LGRRPLL+GGV P+VAV ALLLYVGCYQ+SFGP
Sbjct: 360 VAVVVIDRLGRRPLLLGGVGGMVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLSFGP 419
Query: 475 ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515
I WLM+SEIFPL+ RGRG+SLAVL NFG+NA+VTFAFSPLK
Sbjct: 420 IGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLK 460
|
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| TAIR|locus:2097780 VGT1 "vacuolar glucose transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 215/452 (47%), Positives = 279/452 (61%)
Query: 68 SVG-AQREYSAGG---EDESRISDATNQEAFSWSSVIXXXXXXXXXXXXXXYDIGATSGA 123
SVG + S+GG E E + + + E +S + I Y+IGATS A
Sbjct: 12 SVGQVVGDSSSGGITAEKEPLLKENHSPENYSVLAAIPPFLFPALGALLFGYEIGATSCA 71
Query: 124 TISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXX 183
+SL+SP LSG +W++LS+V +G++ SGSLYGAL+GSI+ +S+AD +GR++ELI+
Sbjct: 72 IMSLKSPTLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKELILAAFLY 131
Query: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVL 243
MH AP+YIAET PSQIRG +ISLKE VL
Sbjct: 132 LVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQIRGRMISLKEFSTVL 191
Query: 244 GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQE 303
G++ GY +GS I + GWRYMY P ++MG GM A+QG+G+ +
Sbjct: 192 GMVGGYGIGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPRWLLLRALQGQGNGEN 251
Query: 304 YKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 363
++ AI +L +LR D +E Q+ + L L S E E +F E+F+G LKA I
Sbjct: 252 LQQAAIRSLCRLRGSVIADSAAE-QVNEILAEL--SLVGEDKEATFGELFRGKCLKALTI 308
Query: 364 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 423
GGLVLFQQITGQPSVLYYA ILQ+AGFSAAADATR+S+++G+ KLVMT ++V +D +
Sbjct: 309 AGGLVLFQQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRV 368
Query: 424 GRRPLLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEI 483
GRRPLL+ GV P VAV+ALLLYVGCYQ+SFGPI WLM+SEI
Sbjct: 369 GRRPLLLCGVSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLSFGPIGWLMISEI 428
Query: 484 FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515
FPL+ RGRGISLAVL NFG+NA+VTFAFSPLK
Sbjct: 429 FPLKLRGRGISLAVLVNFGANALVTFAFSPLK 460
|
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| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 132/405 (32%), Positives = 193/405 (47%)
Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXX 197
F+LS G VVS L GA LG++ +AD++GRKR LII
Sbjct: 49 FHLSPQMNGFVVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSIS 108
Query: 198 XXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257
A + APLYI+E P RG L+SL +L + +GI L Y V +
Sbjct: 109 WLVIGRIIVGIAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVV-DYYFA 167
Query: 258 AVGGWRYMYGLSA-PLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLR 316
WR M+ P ALL+ +GM + +G ++E+A+ L KLR
Sbjct: 168 RHDAWRSMFAAGVIPAALLL-LGMIVLPYSPRW-----IFSRG----HEEKALWILRKLR 217
Query: 317 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 376
P +E+++E SL+ D ++ F ++ + P L I GL +FQQ+TG
Sbjct: 218 GHGPH---AEQELEHIRASLQQQKGDWRT--LFSKIIR-PTL---FIAIGLAVFQQVTGI 268
Query: 377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL---IGGV 433
+VLYYA IL+ GF A+ A ++ IG +++T I++ +D LGRRPLL +G +
Sbjct: 269 NTVLYYAPTILKMTGFQASQTAILATMGIGAVLVIITIISLPLIDSLGRRPLLFIGVGAM 328
Query: 434 CXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 493
+A +LL+++ + IS GPI WLM SEIFPLR RG G
Sbjct: 329 TVSLLVLSWSFKVHGHMDYMRWIAFGSLLVFISGFSISLGPIMWLMFSEIFPLRVRGLGA 388
Query: 494 SLAVLTNFGSNAIVTFAFSPL--------KVFIHFSIKMVSTWFM 530
S+ TN+ SN +VT F L FI+F I +++ F+
Sbjct: 389 SIGACTNWASNWLVTITFLTLIEYLGPSGTFFIYFIISVITLIFI 433
|
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| UNIPROTKB|F1MIV2 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 7.0e-34, Sum P(2) = 7.0e-34
Identities = 103/321 (32%), Positives = 146/321 (45%)
Query: 119 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
A SG + + +SG T L+ + +VVS L GALL S++ + D GR+
Sbjct: 52 AVSGFLVGYELGIISGALLQIRTLLVLTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRR 111
Query: 174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
+I+ + +YIAE P RG L
Sbjct: 112 AAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLL 171
Query: 234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
+SL EL IV+GIL Y N GW+YM+GL PL +L I M
Sbjct: 172 VSLNELMIVIGILFAYISNYAFANISHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM- 230
Query: 294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
KG ++E A LGKLR +S+ E T++ KSS DE + SF ++F
Sbjct: 231 ----KG----HEEAASKVLGKLRA------ISDTTEELTVI--KSSLKDEY-QYSFWDLF 273
Query: 354 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 411
+ N++ I IG LV F QITGQP++L+YA +L+S GF + A+ S +GV K++
Sbjct: 274 RSKDNMRTRIMIGLMLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 333
Query: 412 MTWIAVAKVDDLGRRPLL-IG 431
T A VD +G + L IG
Sbjct: 334 STIPATLLVDQVGSKTFLCIG 354
|
|
| UNIPROTKB|Q5J316 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 101/321 (31%), Positives = 143/321 (44%)
Query: 119 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
A SG + + +SG T L+ + +VVS L GALL S++ + D GR+
Sbjct: 52 AVSGFLVGYELGIISGALLQIRTLLVLTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRR 111
Query: 174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
+I+ + +YIAE P RG L
Sbjct: 112 AAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLL 171
Query: 234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
+SL EL IV+GIL Y N GW+YM+GL PL +L I M
Sbjct: 172 VSLNELMIVIGILFAYISNYAFANISHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM- 230
Query: 294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
KG ++E A LGKLR + + L +KSS DE + SF ++F
Sbjct: 231 ----KG----HEEAASKVLGKLR--------AVLDTTEELTVIKSSLKDEY-QYSFWDLF 273
Query: 354 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 411
+ N++ I IG LV F QITGQP++L+YA +L+S GF + A+ S +GV K++
Sbjct: 274 RSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 333
Query: 412 MTWIAVAKVDDLGRRPLL-IG 431
T A VD +G + L IG
Sbjct: 334 STIPATLLVDQVGSKTFLCIG 354
|
|
| UNIPROTKB|Q8TD20 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 5.5e-33, Sum P(2) = 5.5e-33
Identities = 101/321 (31%), Positives = 142/321 (44%)
Query: 119 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
A SG + + +SG T LS + +VVS + GALL S+ + D GR+
Sbjct: 48 AVSGLLVGYELGIISGALLQIKTLLALSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRR 107
Query: 174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
+I+ + +YIAE P RG L
Sbjct: 108 TAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLL 167
Query: 234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
+SL EL IV+GIL Y N GW+YM+GL PL +L I M
Sbjct: 168 VSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVMK 227
Query: 294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
+G S LG+LR LS+ E T++ KSS DE + SF ++F
Sbjct: 228 GQEGAAS---------KVLGRLRA------LSDTTEELTVI--KSSLKDEY-QYSFWDLF 269
Query: 354 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 411
+ N++ I IG LV F QITGQP++L+YA +L+S GF + A+ S +GV K++
Sbjct: 270 RSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 329
Query: 412 MTWIAVAKVDDLGRRPLL-IG 431
T A VD +G + L IG
Sbjct: 330 STIPATLLVDHVGSKTFLCIG 350
|
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| UNIPROTKB|F1P4J7 SLC2A12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 5.9e-33, Sum P(2) = 5.9e-33
Identities = 99/324 (30%), Positives = 145/324 (44%)
Query: 117 IGATSGATISLQSPELSG-----TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG 171
I A SG + + +SG ++ LS + +VVS L+GAL S+ + D G
Sbjct: 16 IAAVSGLLMGYELGLISGALLQMSSILALSCKEQEIVVSSLLFGALFASLTGGFLIDRFG 75
Query: 172 RKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRG 231
R+ +II + +YIAE P RG
Sbjct: 76 RRFAIIIASSLLVMGSLILLPHESYGILIVGRIAIGISISLSSIATCVYIAEIAPQHRRG 135
Query: 232 TLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMXXXXXXXXXX 290
L+SL EL IV+GIL Y + ++ +V GW+YM+GL PL L I M
Sbjct: 136 LLVSLNELMIVIGILFAY-ISNYAFASVSHGWKYMFGLVIPLGALQAIAMYFLPPSPRFL 194
Query: 291 XXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 350
++ E A L +LR D E L +KSS DE + SF+
Sbjct: 195 V---------MKNNDEAARKILERLRET--SDATKE------LTVIKSSLKDEH-QYSFV 236
Query: 351 EVFQGPN-LKA-FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVF 408
++F+ N ++A ++G LV F Q TGQP++L+YA +L+S GF + A+ S +GV
Sbjct: 237 DLFRSKNNMRARMLVGLTLVFFVQTTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVV 296
Query: 409 KLVMTWIAVAKVDDLGRRPLL-IG 431
K+V T A VD +G + L IG
Sbjct: 297 KVVSTVPATVFVDKVGSKTFLCIG 320
|
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| UNIPROTKB|F1PA43 SLC2A12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 7.1e-32, Sum P(2) = 7.1e-32
Identities = 99/321 (30%), Positives = 142/321 (44%)
Query: 119 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
A SG + + +SG T L+ + +VVS L GALL S+ + D GR+
Sbjct: 48 AVSGLLVGYELGLISGALLQLRTLLALTCHEQEMVVSSLLIGALLASLTGGVLIDRYGRR 107
Query: 174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
+I+ + +YIAE P RG L
Sbjct: 108 AAIILSSCLLGLGSLILILSLSYEVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLL 167
Query: 234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
+SL EL IV+GIL Y N GW+YM+GL P +L I M
Sbjct: 168 VSLNELMIVIGILFAYISNYAFANVSHGWKYMFGLVIPFGVLQAIAMYFLPPSPRFLVM- 226
Query: 294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
KG ++E A L +LR +S+ E L +KSS DE + SF ++F
Sbjct: 227 ----KG----HEEAASKVLRRLRA------ISDTTEE--LTGIKSSLKDEY-QYSFWDLF 269
Query: 354 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 411
+ N++ I IG LV F Q+TGQP++L+YA +L+S GF + A+ S +GV K++
Sbjct: 270 RSKDNMRTRIMIGLTLVFFVQVTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 329
Query: 412 MTWIAVAKVDDLGRRPLL-IG 431
T A VD +G + L IG
Sbjct: 330 STIPATLLVDHVGSKTFLCIG 350
|
|
| MGI|MGI:3052471 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 103/321 (32%), Positives = 141/321 (43%)
Query: 119 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 173
A SG + + +SG T L+ + +VVS L GA L S+ + D GR+
Sbjct: 52 AISGLLVGYELGLISGALLQIRTLLALTCHEQEMVVSSLLIGAFLASLTGGVLIDRYGRR 111
Query: 174 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 233
+I+ + +YIAE P RG L
Sbjct: 112 LAIILSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLL 171
Query: 234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 293
+SL EL IV GIL Y N GW+YM+GL PL +L I M
Sbjct: 172 VSLNELMIVTGILFAYISNYAFANISNGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM- 230
Query: 294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353
KG QE E A L KLR +S+ E TL+ KSS DE + SF ++F
Sbjct: 231 ----KG--QE--ESAGKVLRKLR------VISDTTEELTLI--KSSLKDEY-QYSFWDLF 273
Query: 354 QGP-NLKA-FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 411
+ N++ +IG LV F Q TGQP++L+YA +L+S GF + A+ S +GV K+V
Sbjct: 274 RSKDNMRTRILIGLTLVFFVQTTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVV 333
Query: 412 MTWIAVAKVDDLGRRPLL-IG 431
T A VD +G + L IG
Sbjct: 334 STIPATLLVDHIGSKTFLCIG 354
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WWW9 | XYLL3_ARATH | No assigned EC number | 0.7247 | 0.9445 | 0.9462 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | scaffold_802528.1 | annotation not avaliable (559 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 559 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-76 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 7e-71 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-64 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-20 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-20 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-17 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 7e-16 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 8e-14 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-12 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 9e-10 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-09 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 4e-09 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 2e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-08 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 5e-08 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 1e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-06 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 9e-05 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 2e-04 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 6e-04 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 8e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.001 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 0.003 | |
| PRK10213 | 394 | PRK10213, nepI, ribonucleoside transporter; Review | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 3e-76
Identities = 148/444 (33%), Positives = 238/444 (53%), Gaps = 32/444 (7%)
Query: 104 LFPALGGLLFGYDIGATSGATISLQSPE-----LSGTTWFNLSAVQLGLVVSGSLYGALL 158
L ALGG LFGYD G GA ++L L+ S V GL+VS G L+
Sbjct: 3 LVAALGGFLFGYDTG-VIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61
Query: 159 GSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LGVLLVGRLLYGLGIGLAMHG 216
GS+ + D GRK+ L+I VL+ +GAL +A G +L+VGR++ GLG+G
Sbjct: 62 GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121
Query: 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF--QINAVGGWRYMYGLSAPLAL 274
P+YI+E P ++RG L SL +L I GIL+ +G + + GWR GL A+
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 275 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334
L+ IG+ LP SPRWL+L+ E+A + L KL R ++ +D+L
Sbjct: 182 LLLIGLLFLPESPRWLVLKGK---------LEEARAVLAKL-RGVSDVDQEIQEEKDSLE 231
Query: 335 SLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFS 393
+ E + S+LE+F+G ++ ++G L +FQQ+TG ++ YY+ I ++ G S
Sbjct: 232 -----RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS 286
Query: 394 AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF 453
D+ V++++GV V T+IA+ VD GRRPLL+ G G+A+ L+L +
Sbjct: 287 ---DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKS 343
Query: 454 P---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 510
+VA+ +LL++ + + +GP+ W++VSE+FPL R + +++A N+ +N ++ F
Sbjct: 344 KGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFL 403
Query: 511 FSPLKVFIHFSIKMVSTWFMILLF 534
F + I + +V ++L
Sbjct: 404 FPIITGAIGGYVFLVFAGLLVLFI 427
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 7e-71
Identities = 147/424 (34%), Positives = 227/424 (53%), Gaps = 31/424 (7%)
Query: 104 LFPALGGLLFGYDIGATSGATISLQSP-ELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 162
L A+GGL+FGYD G GA + + + S+ GLVVS L G +G++
Sbjct: 31 LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90
Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAP---GLGVLLVGRLLYGLGIGLAMHGAPL 219
++D GRK+ L+I A+L+ +GA+ A + +L+VGR+L G+G+G+A P+
Sbjct: 91 AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150
Query: 220 YIAETCPSQIRGTLISLKELFIVLGILLGYFVGS--FQINAVGGWRYMYGLSAPLALLMG 277
Y++E P +RG L SL +L I GIL+ Y GS +N GWR GL A L+
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF 210
Query: 278 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLK 337
+G++ LP SPRWL+ +G+ E+A +L +LR G ++++ D L +
Sbjct: 211 LGLFFLPESPRWLVG---KGR------VEEARKSLARLR----GTSGEDKELLDELELID 257
Query: 338 SSYTDEK-----SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGF 392
+ EK S GS + + F +G L FQQ TG +++YY+ I ++AG
Sbjct: 258 IKRSIEKRSVQPSWGSLFSSTRRIRRRLF-LGVVLQWFQQFTGINAIMYYSPTIFENAGV 316
Query: 393 SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG 452
S A VS+++G T++A+ VD GRRPLL+ G G+A+ L +L
Sbjct: 317 S-TDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT 375
Query: 453 FPL-----VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 507
VA+ +LL++ + + +GP+ W++VSEIFPL R +GIS+AV N+ +N IV
Sbjct: 376 GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIV 435
Query: 508 TFAF 511
F F
Sbjct: 436 GFLF 439
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 2e-64
Identities = 141/435 (32%), Positives = 226/435 (51%), Gaps = 50/435 (11%)
Query: 104 LFPALGGLLFGYDIGATSGATISLQSPELSGTTW-FNLSAVQLGLVVSGSLYGALLGSIL 162
L LGGLLFGYD SG SL + ++ + + LG V+ +L G ++G L
Sbjct: 15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL 74
Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVG-------------RLLYGLG 209
++ GR+ L IAAVL+ + AL +A+ P G +G R++ G+G
Sbjct: 75 GGYCSNRFGRRDSLKIAAVLFFISALGSAW-PEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133
Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GW 262
+GLA +P+YIAE P+ IRG L+S + I+ G L+ YFV F + GW
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193
Query: 263 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGD 322
RYM+ A ALL + ++ +P +PR+L+ R Q EQA L K+ G+
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ---------EQAEGILRKIM----GN 240
Query: 323 KLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 382
L+ + +++ +K S + G L +F + +IG L +FQQ G VLYY
Sbjct: 241 TLATQALQE----IKHSLDHGRKTGGKLLMF---GVGVIVIGVMLSVFQQFVGINVVLYY 293
Query: 383 AGPILQSAGFSAAADATRV-SVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 441
A I ++ G A+ D + ++++GV L T +A+ VD GR+PL I G G+A+ +
Sbjct: 294 APEIFKTLG--ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 351
Query: 442 LLS--AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 499
L Y + G +VA+ ++L YV + +S+GP+ W+++SEIFP RG+ +++AV
Sbjct: 352 SLGTAFYTQAPG---IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 408
Query: 500 NFGSNAIVTFAFSPL 514
+ +N V++ F +
Sbjct: 409 QWIANYFVSWTFPMM 423
|
Length = 479 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-20
Identities = 100/412 (24%), Positives = 158/412 (38%), Gaps = 55/412 (13%)
Query: 97 SSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGA 156
+ L L+ GYD+ A + +P +S + L VQLG + S L G
Sbjct: 13 RYQWRAIILSFLIMLMDGYDL-----AAMGFAAPAISAE--WGLDPVQLGFLFSAGLIGM 65
Query: 157 LLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216
G++ +AD +GR+R L+ + +L+++ L A A + LL+ R L GLG+G M
Sbjct: 66 AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125
Query: 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY--GLSAPLAL 274
++E P + RGT + L +G +G F+ + I V GWR ++ G APL L
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI-PVFGWRSLFYVGGIAPLLL 184
Query: 275 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334
L+ + + LP S +L+ + + + + A + L E
Sbjct: 185 LLLLMRF-LPESIDFLVSK--RPETVRRIVNAIAPQM-----QAEAQSALPE-------- 228
Query: 335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAG---PIL---Q 388
T F +FQG + ++ L + +Y+ P L
Sbjct: 229 ---QKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLTNWLPKLMVEL 280
Query: 389 SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 448
S AA + GV + I D LG R LLLL A +
Sbjct: 281 GFSLSLAATGGALFNFGGVIG---SIIFGWLADRLGPRVT---------ALLLLLGAVFA 328
Query: 449 ILGGFPLVAVSALLLYVGCYQI-SFGPISWLMVS--EIFPLRTRGRGISLAV 497
+L G L + + LLL G S L +P R G+ A+
Sbjct: 329 VLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAI 380
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 8e-20
Identities = 70/190 (36%), Positives = 93/190 (48%), Gaps = 8/190 (4%)
Query: 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 162
L LG L G D G S A L LSA Q GL+VS G LGS+L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLA-------EDLGLSASQAGLIVSAFSLGYALGSLL 53
Query: 163 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 222
++D GR+R L++ +L+ALG+L A+A L +LLVGR L GLG G A IA
Sbjct: 54 AGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIA 113
Query: 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282
E P + RG + L LG LLG +G + GWR+++ + A L LL+ + +
Sbjct: 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGL-LAESLGWRWLFLILAILGLLLALLLLF 172
Query: 283 LPPSPRWLLL 292
L L L
Sbjct: 173 LLRLLLLLAL 182
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-17
Identities = 100/414 (24%), Positives = 173/414 (41%), Gaps = 70/414 (16%)
Query: 111 LLFGYDIGATSGATISLQSPELSGTTW------------FNL---SAVQLGLVVSGSLYG 155
L G + S ++ P L G + ++L A ++ L S G
Sbjct: 80 SLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVG 139
Query: 156 ALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI-GLAM 214
LLGS + ++D GRK+ L+++ ++ A+ + TA++P V LV RLL G+GI G+ +
Sbjct: 140 VLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWV 199
Query: 215 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 274
L E P + R + +L ++F LG++L V F + WR++ +
Sbjct: 200 QAVVLN-TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF----IPDWRWLQLAVSLPTF 254
Query: 275 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334
L + W +P SPRWL+ QG+ E+A+ L ++ + G KL E +
Sbjct: 255 LFFLLSWFVPESPRWLIS---QGRI------EEALKILQRIAKI-NGKKLP---AEVLSL 301
Query: 335 SLKSSYTDEKSEGSFLEVFQGPNLKA---------FIIG---GGLVLFQQITGQPSVLYY 382
SL+ + K + SFL++F+ PNL+ F GLVL G
Sbjct: 302 SLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG------- 354
Query: 383 AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 442
G I S + + +T + +D LGRR + + ++LLL
Sbjct: 355 -GNIYLDLFISGLVE------LPAKL---ITLLL---IDRLGRRYTMAASLLLAGVALLL 401
Query: 443 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA 496
L + + + +L +F + +L +E++P R G+ +
Sbjct: 402 L---LFVPVDLYFLRTALAVLGKFGITSAFQMV-YLYTAELYPTVVRNLGVGVC 451
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 7e-16
Identities = 80/369 (21%), Positives = 133/369 (36%), Gaps = 51/369 (13%)
Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
+S ++GL+++ G L L ++D GR+R L+I +L+ALG L +A L
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW 86
Query: 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257
+LLV R+L GLG G A IA+ P + RG + L LG LG +G +
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL-LA 145
Query: 258 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRR 317
++ GWR + + A LALL + L
Sbjct: 146 SLFGWRAAFLILAILALLAAV--------------------------------LAALLLP 173
Query: 318 RPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 377
RPP + + E+ L ++ + + L
Sbjct: 174 RPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL--------------ALLLFGFAFF 219
Query: 378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 437
++L Y + G SA + + + + + D LGRR L+ + +
Sbjct: 220 ALLTYLPLYQEVLGLSALLAGLLLGLAGLLG-AIGRLLLGRLSDRLGRRRRLLLALLLLI 278
Query: 438 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 497
L+ L L+ + + + LL +G P +VS++ P RG L
Sbjct: 279 LAALGLAL---LSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYN 335
Query: 498 LTNFGSNAI 506
A+
Sbjct: 336 TAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 8e-14
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 10/158 (6%)
Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
F L Q+G S + G L G++L +AD +GRKR LI++ L+ L +L TA A
Sbjct: 45 FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP 104
Query: 198 VLLVGRLLYGLGIGLAMHGAPLYIA---ETCPSQIRGTLISLKELFIVLGILLGYFVGSF 254
LLV RLL G+G+G A+ P IA E ++RGT +SL + G L +G
Sbjct: 105 SLLVARLLTGVGLGGAL---PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL 161
Query: 255 QINAVGGWRYMY--GLSAPLALLMGIGMWSLPPSPRWL 290
WR+++ G PL L+ + W LP S +
Sbjct: 162 AAGD-AAWRHIFYVGGVGPLLLVPLLMRW-LPESRAFA 197
|
Length = 406 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 90/355 (25%), Positives = 140/355 (39%), Gaps = 67/355 (18%)
Query: 158 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLG 209
LG+I+ D +GRK+ L+I ++ +G L P +LL+ RL+ G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GW 262
+G GA LY+AE P RG S +++ +G+LL +G GW
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 263 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGD 322
R + +SA L L IG++ LRR
Sbjct: 170 RIPFLVSAVLVL---IGLY---------------------------------LRRN---- 189
Query: 323 KLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 382
+E+T V K+ +K G E + K F++G GLV+ T Y
Sbjct: 190 ------LEETPVFEKAQEKHKKKRGPIAETLTK-HRKPFLLGLGLVIATTTTFYLITTYL 242
Query: 383 AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP-LLIGGVCGIALSLL 441
+ Q+ G SA A V ++ + + ++ A D +GRRP L+I V L++
Sbjct: 243 PTYLTQTLGLSAN-SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP 301
Query: 442 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA 496
LL A + G + +L + GP+ + E+FP R G SLA
Sbjct: 302 LLMAL--LDSGSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLA 353
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 83/362 (22%), Positives = 139/362 (38%), Gaps = 67/362 (18%)
Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
+S G +++ G LG+ L+ + L R+R L+ L+ + L +A AP
Sbjct: 43 LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFA 102
Query: 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257
VLL+ R L GL G+ A A P RG ++L + L +LG +G+F +
Sbjct: 103 VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF-LG 161
Query: 258 AVGGWRYMYGLSAPLALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLR 316
+ GWR + A LALL + +W LPPS + + L +L
Sbjct: 162 QLFGWRATFLAIAVLALLALLLLWKLLPPS-------------EISGSLPGPLRTLLRLL 208
Query: 317 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 376
RRP + + G L+
Sbjct: 209 RRP---------------GVLLGLL----------------ATFLFMTGHFALYT----- 232
Query: 377 PSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 435
Y P L+S AGFS +A + V + G+ + + ++ D G R LI +
Sbjct: 233 -----YIRPFLESVAGFSVSA-VSLVLLAFGIAGFIGNLL-GGRLADRGPRRALIAALLL 285
Query: 436 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 495
+AL+LL L+ G P +A++ L L + +F P + + + L ++
Sbjct: 286 LALALLALT----FTGASPALALALLFL----WGFAFSPALQGLQTRLARLAPDAADLAG 337
Query: 496 AV 497
++
Sbjct: 338 SL 339
|
Length = 394 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 11/182 (6%)
Query: 113 FGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR 172
G+ + A ++L E++G F L+ V ++S +L G+++ D GR
Sbjct: 19 LGWLLDAFDFFLVALVLAEVAGE--FGLTTVDAASLISAALISRWFGALMFGLWGDRYGR 76
Query: 173 KRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT 232
+ ++ + VL++ G L +APG + + RL+ G+G+G + Y+ E+ P +R
Sbjct: 77 RLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNK 136
Query: 233 LISLKELFIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGMWSLPPSP 287
++ G +G V + + V GWR ++ +S + ++P +
Sbjct: 137 ASG----LLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192
Query: 288 RW 289
W
Sbjct: 193 DW 194
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-09
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Query: 146 GLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 205
GL+++G G L+ S L + D GRK L++ ++ L A + + VL++ R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 206 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 265
G G A+ IA+ P + RG + L I LG LLG +G + GWR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGV-LAQFLGWRAP 119
Query: 266 YGLSAPLALLMGIGMWSLPP 285
+ A LAL I + L P
Sbjct: 120 FLFLAILALAAFILLAFLLP 139
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 16/163 (9%)
Query: 108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIA 167
LG LL G+D I+L E+ G F L+ VQ ++S + G +L+ ++
Sbjct: 27 LGYLLDGFDF-----VLITLVLTEVQGE--FGLTTVQAASLISAAFISRWFGGLLLGAMG 79
Query: 168 DFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPS 227
D GR+ ++I+ VL+++G L +APG L + RL+ G+G+ + Y+ E+ P
Sbjct: 80 DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPK 139
Query: 228 QIR----GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 266
+R G LIS +G ++ V S + V GWR ++
Sbjct: 140 HLRNKASGFLIS----GFSIGAVVAAQVYSL-VVPVWGWRALF 177
|
Length = 496 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 3/187 (1%)
Query: 99 VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALL 158
++L FL L L + + + + P LSA + GL++S G +L
Sbjct: 168 LLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-LGLSAAEAGLLLSLFGLGGIL 226
Query: 159 GSILVYSIADFLGRKRE-LIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217
G++L ++D LGR+R L+I +L ALG L A AP L +LLV LL G G+G A
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286
Query: 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 277
+E P + RGT L F LG LG + + GG+ ++ + A LALL
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL-LLDTGGYGGVFLILAALALLAA 345
Query: 278 IGMWSLP 284
+ + LP
Sbjct: 346 LLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
LSA Q G V S +G ++G + D G ++ L + V++ + A+A
Sbjct: 24 LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83
Query: 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG-ILLGYFVGSFQI 256
L + R+L G G L +A P+ R T +S+ LG I+ G VG I
Sbjct: 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI 143
Query: 257 NAVGGWRYMYGLSAPLALLMGI 278
+ W++ + + L ++ G+
Sbjct: 144 HF--SWQWAFIIEGVLGIIWGV 163
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 133 SGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY 192
SG V LG++V +G L AD LGRK+ L+I + A +++
Sbjct: 202 SGKGMLG-LIVYLGMMVGAFFWGGL---------ADKLGRKQCLLICLSVNGFFAFFSSF 251
Query: 193 APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG-------- 244
G G L RLL G GIG A+ Y AE + RG +S +F ++G
Sbjct: 252 VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
Query: 245 -ILLGYFVGSFQINAV---GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL 291
++ ++ SFQ+ + WR + A + + +P SPR+ L
Sbjct: 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL 362
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 5/181 (2%)
Query: 362 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD 421
++ L F G +L Y LQ +AA+A + + G+ ++ + D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 422 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS 481
LGRR LL+ +A LLL A L + + + P + S
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF-----PALLTLAS 291
Query: 482 EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFC 541
E+ P RG L A+ L + + + LL L+
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351
Query: 542 R 542
Sbjct: 352 P 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL- 196
F+L+ + L+ G + S+ + LG K +++ +LYA+GA A
Sbjct: 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102
Query: 197 --GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 254
G LV + GIGL A Y+ + ++L + F LG +LG +GS
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSS 162
Query: 255 QI 256
I
Sbjct: 163 LI 164
|
Length = 422 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 93/416 (22%), Positives = 144/416 (34%), Gaps = 68/416 (16%)
Query: 146 GLVVSGSLYGALLGSILVYSIADFLGRKR----ELIIAAVLYALGALTTAYAPG--LGVL 199
V + G L G + +AD LGRKR ELII + L+ +P + L
Sbjct: 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATL 118
Query: 200 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV-------- 251
R G+GIG + + +E + RG +++ GIL G V
Sbjct: 119 CFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGF 178
Query: 252 --------------GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL---RA 294
GS WR + G A ALL ++P +PR+
Sbjct: 179 KHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDV 238
Query: 295 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 354
Q + + I A D++ E+ V S F F+
Sbjct: 239 EQAASDMSAVLQVKIEA--------EPDEV-EKASTAVEVPKASWS------DFFTHFFK 283
Query: 355 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADAT---RVSVVIGVFKLV 411
+ K ++G F V IL + G+S A V L+
Sbjct: 284 WRHGKH-LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLI 342
Query: 412 MT--------WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLL 463
+ W+ V VD +GR+P+ + G + + +L Y L +A+ L
Sbjct: 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQ 402
Query: 464 YVGCYQISFGP--ISWLMVSEIFPLRTRG--RGISLAVLTNFGSNAIVTFAFSPLK 515
+ +FGP ++++ E+FP R R GIS A G+ I F F L
Sbjct: 403 FFA----NFGPNATTFIVPGEVFPTRYRSTAHGIS-AASGKAGA-IIGQFGFLYLA 452
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 158 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG---LGVL-----LVGRLLYGLG 209
LG+I++ + D +GR++ LI+ + A G L A+ PG +G+ L+GRLL G
Sbjct: 71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFS 130
Query: 210 IGLAMHGAPLYIAETCPSQIRGTLISL----KELFIVLGILLGYFVGSF----QINAVGG 261
G+ + G +Y+AE +G S +++ +V LLGY + + Q+ G
Sbjct: 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAE-WG 189
Query: 262 WR 263
WR
Sbjct: 190 WR 191
|
Length = 434 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 93/371 (25%), Positives = 148/371 (39%), Gaps = 82/371 (22%)
Query: 158 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV--------LLVGRLLYGLG 209
+G L IAD GRK+ ++I+ + G+L A PG LL+ RL GL
Sbjct: 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS 137
Query: 210 IGLAMHGAPLYIAETCPSQIRG--------TLISLKELFIVLGILLGYFVGSFQINAVGG 261
+G + Y++E +G TLI + L +++ ++L + ++ G
Sbjct: 138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELRE-WG 196
Query: 262 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPG 321
WR + L A LA++ L LR L E +Q AL + G
Sbjct: 197 WRIPFALGAVLAVVA-------------LWLRR-----QLDETSQQETRAL-----KEAG 233
Query: 322 DKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLY 381
SLK + + + +F+ V F G L + T Y
Sbjct: 234 -------------SLKGLWRNRR---AFIMVL------GFTAAGSLCFYTFTT------Y 265
Query: 382 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR-PLLIGGVCGIALSL 440
++ +AG A + ++ + VF L+ I A D +GRR +L G ++
Sbjct: 266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG-ALSDKIGRRTSMLCFGSLAALFTV 324
Query: 441 LLLSAYYKI---LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP--LRTRGRGISL 495
+LSA + F LV + LL V Y IS ++ +E+FP +R G G+S
Sbjct: 325 PILSALQNVSSPYAAFGLVMCA--LLIVSFYT----SISGILKAEMFPAQVRALGVGLSY 378
Query: 496 AVLTN-FGSNA 505
AV FG +A
Sbjct: 379 AVANALFGGSA 389
|
Length = 432 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 4/180 (2%)
Query: 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 199
L+ ++ + + + G G L +AD GRK ++ + V Y++G + A G+ +L
Sbjct: 50 LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109
Query: 200 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS-LKELFIVLGILLGYFVGSFQINA 258
+ R + G+G+ A Y E+ P ++ + L F + I+ YF+ SF
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA--E 167
Query: 259 VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR-AVQGKGSLQEYKEQAISALGKLRR 317
GWR + + LL+ P S W + + +GK S + ++S G R
Sbjct: 168 AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNR 227
|
Length = 426 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
F S GL++S YG ++ I V +A K + I L ++ ++ +A G G
Sbjct: 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130
Query: 198 VLLV--GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255
+ LV R++ GL G I + P + R L+ + G LG F+
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM----STSGFQLGTFI---- 182
Query: 256 INAVGGWRYMYGLSAP 271
+ GW P
Sbjct: 183 FLPISGWLCESWGGWP 198
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
Query: 146 GLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 205
G V+ + + A+ S+ + R+ +I+ AVL L L ++A +LL+GR
Sbjct: 58 GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117
Query: 206 YGLGIG--------LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257
GL +G L M P S I G + + +V+ LG F+G
Sbjct: 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAV----SIALVIAAPLGSFLG----- 168
Query: 258 AVGGWRYMYGLSAPLALLMGIGMW-SLPPSP 287
+ GWR ++ +A + +L + SLP P
Sbjct: 169 ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 559 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.98 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.98 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.98 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.98 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.98 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.98 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.98 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.94 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.94 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.88 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.86 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.85 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.85 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.85 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.84 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.81 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.78 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.77 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.77 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.73 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.7 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.7 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.7 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.63 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.59 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.55 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.53 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.52 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.51 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.49 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.48 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.48 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.47 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.47 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.46 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.44 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.44 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.43 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.4 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.39 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.38 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.38 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.37 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.37 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.37 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.37 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.36 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.36 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.35 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.35 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.35 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.34 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.33 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.33 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.33 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.32 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.32 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.31 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.31 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.31 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.31 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.3 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.29 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.29 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.29 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.29 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.29 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.27 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.27 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.26 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.26 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.26 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.26 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.25 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.25 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.25 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.24 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.23 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.23 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.23 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.23 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.23 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.22 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.22 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.21 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.2 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.2 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.19 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.18 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.18 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.17 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.17 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.16 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.16 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.16 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.15 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.15 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.15 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.13 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.12 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.11 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.11 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.11 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.1 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.1 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.08 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.07 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.07 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.06 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.04 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.04 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.03 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.02 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.02 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.0 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.99 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.99 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.99 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.98 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.96 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.95 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.95 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.94 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.94 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.92 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.92 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.91 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.89 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.88 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.88 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.87 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.82 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.8 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.78 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.77 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.75 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.74 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.74 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.7 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.66 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.65 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.62 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.58 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.55 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.54 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.54 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.53 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.48 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.47 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.41 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.36 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.31 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.3 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.28 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.26 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.2 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.2 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.19 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.17 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.98 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.97 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.96 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.92 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.85 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.83 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.8 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.7 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.64 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.42 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.3 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.3 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.22 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.92 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.72 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.69 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.46 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.43 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.31 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.27 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.25 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.2 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.07 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.96 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.94 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.64 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.29 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 93.91 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.29 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.13 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.9 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 91.68 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 89.54 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 89.26 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 88.71 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 88.63 | |
| PF02535 | 317 | Zip: ZIP Zinc transporter; InterPro: IPR003689 The | 88.46 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 86.51 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 85.61 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 85.59 | |
| PF11947 | 153 | DUF3464: Protein of unknown function (DUF3464); In | 83.78 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 82.0 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 80.59 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 80.47 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 80.44 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=328.89 Aligned_cols=444 Identities=30% Similarity=0.482 Sum_probs=361.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccCC---CCCCCCcccc--CChhH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 008624 98 SVILPFLFPALGGLLFGYDIGATSGATISLQS---PELSGTTWFN--LSAVQ----LGLVVSGSLYGALLGSILVYSIAD 168 (559)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~s~~~----~g~~~s~~~l~~~i~~~~~G~l~d 168 (559)
+.....+..+++.+-.||....+++....+.. +...+. +| .++.+ .+.+.+++.+|.++|+++.|.++|
T Consensus 8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r--~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~ 85 (485)
T KOG0569|consen 8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIER--YGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD 85 (485)
T ss_pred HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667779999999998876543321 111111 33 34433 477889999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHh---hcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHH
Q 008624 169 FLGRKRELIIAAVLYALGALTTAY---APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGI 245 (559)
Q Consensus 169 r~Grr~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 245 (559)
|+|||..+.++.++..++.++..+ .+++.+++++|++.|+..|......+.++.|..|.+.||......+.+..+|.
T Consensus 86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ 165 (485)
T KOG0569|consen 86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI 165 (485)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence 999999999998888888777665 57899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh-hhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcc
Q 008624 246 LLGYFVGS-FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKL 324 (559)
Q Consensus 246 ~~g~~~~~-~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (559)
++|..++. .+......|++.+.+..+++++.++...++||||||+..+ +++.++|++.++.+++..+.+..
T Consensus 166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~--------k~~~~~A~~sl~~y~G~~~~~~~ 237 (485)
T KOG0569|consen 166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIK--------KGDEEEARKALKFYRGKEDVEAE 237 (485)
T ss_pred HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH--------cCCHHHHHHHHHHHhCCCcchhH
Confidence 99977764 4444444899999999999999999999999999999985 57889999999999998765544
Q ss_pred cHHHHHHHHHHhhhcccccccccchhhhccCCchh-HHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHH
Q 008624 325 SERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSV 403 (559)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (559)
.+...++..+ +...+++..+++++++++..+ ...+.+.+....++.+.+...+|...++++.|++. ..+.+...
T Consensus 238 ~e~~~~e~~~----~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~-~~a~~an~ 312 (485)
T KOG0569|consen 238 IEEMLREIEE----EELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTP-EEAQYANL 312 (485)
T ss_pred HHHHHHHHHH----hccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 3333222222 222334667899999998766 46666778888999999999999999999999987 78899999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCch-h---HHHHHHHHHHHHHhhccccccccee
Q 008624 404 VIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF-P---LVAVSALLLYVGCYQISFGPISWLM 479 (559)
Q Consensus 404 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (559)
..++..++.++++.++.||+|||++++.+..++.+..+++.......+.. . +..+...+++...++.+.+|+.+.+
T Consensus 313 ~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi 392 (485)
T KOG0569|consen 313 GIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFI 392 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHH
Confidence 99999999999999999999999999999999988888877655433222 2 2345666777888888999999999
Q ss_pred ecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccccCCchhhhhh
Q 008624 480 VSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQRTFSSSLLLL 557 (559)
Q Consensus 480 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (559)
.+|++|++.|++++++..+++++..++....+.++.+..|. ..++.+.+......+..+...+|+|+|+.+|..+++
T Consensus 393 ~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~ 469 (485)
T KOG0569|consen 393 GAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEEL 469 (485)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998 445555555556677777888999999887765544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=353.51 Aligned_cols=426 Identities=18% Similarity=0.160 Sum_probs=314.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 008624 98 SVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI 177 (559)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~ 177 (559)
..+.++++++++.+..+++...++..+|.+..+ ++++..+.+++.+++.++.+++++++|+++||+|||++++
T Consensus 164 ~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~-------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~li 236 (742)
T TIGR01299 164 FQWALFFVLGLALMADGVEVFVVGFVLPSAEKD-------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLL 236 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 344556667777888899998888888888766 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcC
Q 008624 178 IAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257 (559)
Q Consensus 178 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 257 (559)
+++++++++.++++++++++.++++|+++|++.|+..+...+++.|++|+++|++.++++.+++.+|.++++.++..+..
T Consensus 237 i~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~ 316 (742)
T TIGR01299 237 ICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP 316 (742)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988766543
Q ss_pred CC------------cchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcc-
Q 008624 258 AV------------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKL- 324 (559)
Q Consensus 258 ~~------------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (559)
.. .+||+.+++.++++++.+++.+++||+|+|+..+ ++.+++.+.+++++..+.....
T Consensus 317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~---------gr~~eA~~iL~~i~~~n~~~~~~ 387 (742)
T TIGR01299 317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLEN---------GKHDEAWMILKLIHDTNMRAKGH 387 (742)
T ss_pred hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHC---------CCHHHHHHHHHHHhcCCCCCcCc
Confidence 21 2799999999888888877788899999999874 6678888888888765532211
Q ss_pred cHHH--HHHHHHHhhh----c-ccccc----------------cccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhh
Q 008624 325 SERQ--IEDTLVSLKS----S-YTDEK----------------SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLY 381 (559)
Q Consensus 325 ~~~~--~~~~~~~~~~----~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (559)
.... .......... + ..... .+.+++++|+.+..+..+ ...+.+++....++.+..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl-~l~~~wf~~~~~yygl~~ 466 (742)
T TIGR01299 388 PEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITI-KLMGVWFTLSFGYYGLSV 466 (742)
T ss_pred hhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 1111 0000000000 0 00000 011355666665544444 444555666667788889
Q ss_pred chHHHHHHc------------------------------------------CC-----C---------------C-----
Q 008624 382 YAGPILQSA------------------------------------------GF-----S---------------A----- 394 (559)
Q Consensus 382 ~~~~~~~~~------------------------------------------~~-----~---------------~----- 394 (559)
|+|.++++. |+ . .
T Consensus 467 w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (742)
T TIGR01299 467 WFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFF 546 (742)
T ss_pred HHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhh
Confidence 999875431 00 0 0
Q ss_pred -----------------------------------------------chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 008624 395 -----------------------------------------------AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 427 (559)
Q Consensus 395 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 427 (559)
.........+..++.+++.++.|+++||+|||+
T Consensus 547 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~ 626 (742)
T TIGR01299 547 KNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR 626 (742)
T ss_pred hccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 001234456677889999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHH
Q 008624 428 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 507 (559)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 507 (559)
++.++.++.+++++++++.. .....+++.++++++.. +..+....++.|++|++.|++++|+.++...+|++++
T Consensus 627 ~l~~~~~lsai~~ll~~~~~-----s~~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiig 700 (742)
T TIGR01299 627 MLAGSMVLSCISCFFLSFGN-----SESAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLG 700 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877766532 22233333333333333 3344566889999999999999999999999999999
Q ss_pred HHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008624 508 TFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQR 548 (559)
Q Consensus 508 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (559)
|++.+.+.+. +...++++.+++.++++++.+. .++++++
T Consensus 701 p~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~~~ 739 (742)
T TIGR01299 701 ILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTRGQ 739 (742)
T ss_pred HHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCccc
Confidence 9999988775 3445555555555544444443 3555444
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=328.40 Aligned_cols=433 Identities=35% Similarity=0.554 Sum_probs=314.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCcccc--------CChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008624 98 SVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFN--------LSAVQLGLVVSGSLYGALLGSILVYSIADF 169 (559)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr 169 (559)
+.+...+++.++.++.+++...+....+.+..+ ++ .+..+.+++.+++.++..++++++|+++||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~ 97 (481)
T TIGR00879 25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFE-------FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR 97 (481)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhcHHHH-------HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 334445556667788888888888887776655 44 448999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhc---chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHH
Q 008624 170 LGRKRELIIAAVLYALGALTTAYAP---GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL 246 (559)
Q Consensus 170 ~Grr~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 246 (559)
+|||++++++.+++.++.+++.+.. +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+
T Consensus 98 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 177 (481)
T TIGR00879 98 FGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGIL 177 (481)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999986543 4558999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh---hhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCc
Q 008624 247 LGYFVG---SFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDK 323 (559)
Q Consensus 247 ~g~~~~---~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (559)
++++++ ..+.+.. +||+.|++.++..++..+..+++||+|+++..+ ++.++..+..++....+..+.
T Consensus 178 ~~~~~~~~~~~~~~~~-~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 247 (481)
T TIGR00879 178 VAYGFGSGKVSLNNTL-GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGK---------GRVEEARKSLARLRGTSGEDK 247 (481)
T ss_pred HHHHHHHHhhcCCCCc-cHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHc---------CChHHHHHHHHHHhCCCCCcH
Confidence 999999 6655555 999999997777777766778899998875542 111222222222222221111
Q ss_pred ccHHHHHHHHHHhhhcccccccccchhhhccCC--chhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHH
Q 008624 324 LSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP--NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV 401 (559)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (559)
............... +.......+.+.++.. ..++..+...+..+..........++.|.++++.|++. ...+..
T Consensus 248 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 324 (481)
T TIGR00879 248 ELLDELELIDIKRSI--EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFLV 324 (481)
T ss_pred HHHHHHHHHHHHHHH--HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHHH
Confidence 111100000000000 0001111133333322 23445555555556566666677888899989999887 778888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCch-----hHHHHHHHHHHHHHhhccccccc
Q 008624 402 SVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF-----PLVAVSALLLYVGCYQISFGPIS 476 (559)
Q Consensus 402 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 476 (559)
.....++.+++.++.+++.||++||+.+..+.++.+++++++.......... .+..+...+++.++++.+..+..
T Consensus 325 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (481)
T TIGR00879 325 SIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVP 404 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCee
Confidence 8899999999999999999999999999888777777776665322111111 33334444555555666666777
Q ss_pred ceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 008624 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQRTF 550 (559)
Q Consensus 477 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (559)
..+..|.+|++.|+++.|+.++..++|++++|.+.+.+.+..|+...++..+++.++..++.+.+.++.++++.
T Consensus 405 ~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 405 WVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred hhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 77889999999999999999999999999999999999999998888877777766666666555565555443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=329.34 Aligned_cols=431 Identities=19% Similarity=0.219 Sum_probs=299.5
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 008624 100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 179 (559)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~ 179 (559)
+.++.+++++.+.++++...++..++.+..+....+ .+.+..+.+++.+.+.+++.++++++|+++||+|||+++.++
T Consensus 15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~ 92 (502)
T TIGR00887 15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGK--GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 334566778889999999999888877654321112 456777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc------hhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 008624 180 AVLYALGALTTAYAPG------LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 253 (559)
Q Consensus 180 ~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 253 (559)
.+++.++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.++++.++.
T Consensus 93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 7899999999999999999999999999999999999999999999999999998876
Q ss_pred hhcC----------------------CCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHH-HHHHH
Q 008624 254 FQIN----------------------AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYK-EQAIS 310 (559)
Q Consensus 254 ~l~~----------------------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~-~~~~~ 310 (559)
.+.. ..++||+.|.+.++++++.++..+++||||+|+..| ++. +++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~---------~~~~~~a~~ 243 (502)
T TIGR00887 173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADV---------AKDVEQAAS 243 (502)
T ss_pred HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHh---------CcchHHHHH
Confidence 5431 112799999999888888878888999999998864 222 23444
Q ss_pred HHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCC---chhHHHHHHHHHHHHHhhCcchhhhchHHHH
Q 008624 311 ALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP---NLKAFIIGGGLVLFQQITGQPSVLYYAGPIL 387 (559)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (559)
.+++....+..+... +.++ .+++ ++..+.+++++++++ ..++..+......+.....++....|.|.++
T Consensus 244 ~~~~~~~~~~~~~~~--~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~ 315 (502)
T TIGR00887 244 DMSAVLQVKIEAEPD--EVEK----ASTA--VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVIL 315 (502)
T ss_pred HHHHHhccccccCcc--cccc----hhcc--ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHH
Confidence 444443322111110 0000 0000 011123466776542 2222222222222222223334566788888
Q ss_pred HHcCCCCchh-----------HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHH
Q 008624 388 QSAGFSAAAD-----------ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456 (559)
Q Consensus 388 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (559)
++.|++.... .........++.+++.++.++++||+|||++++.+..+.++++.++...... .....
T Consensus 316 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~--~~~~~ 393 (502)
T TIGR00887 316 SAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH--LSTHG 393 (502)
T ss_pred HHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh--cchhH
Confidence 8888764211 0112334455667788999999999999999888887777777666543211 01111
Q ss_pred HHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhh----------hhhHHHHH
Q 008624 457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFI----------HFSIKMVS 526 (559)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~----------g~~~~~~~ 526 (559)
.+...++....+..+..+..+.+..|.+|++.|+++.|+.+++++++++++|.+.+.+.+.. +....+.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 473 (502)
T TIGR00887 394 FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEI 473 (502)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHH
Confidence 12222222233344555667788899999999999999999999999999999999998843 33344555
Q ss_pred HHHHHHHHHHHHHHhhccccccCCch
Q 008624 527 TWFMILLFDWLVQFCRSCWEQRTFSS 552 (559)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (559)
.+++.++..+.. ++.+++++|+.||
T Consensus 474 ~~~~~~~~~i~~-~~lpEt~~~~lee 498 (502)
T TIGR00887 474 FALFMFLGILFT-LLIPETKGKSLEE 498 (502)
T ss_pred HHHHHHHHHHHh-eEeccCCCCCHHh
Confidence 555544444433 4557777777655
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=321.79 Aligned_cols=428 Identities=32% Similarity=0.520 Sum_probs=305.4
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccCCCC---CCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 008624 100 ILPFLFPALGGLLFGYDIGATSGATISLQSPE---LSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 176 (559)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~ 176 (559)
..+.++++++.+..+++...+++..+.+.++. ...+ ++.+..+.+++.+.+.++..++++++|+++||+|||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~ 88 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLS--ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHhHHHHHHHhccccccc--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34455666788999999999998877665542 1222 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh------------cchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHH
Q 008624 177 IIAAVLYALGALTTAYA------------PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 244 (559)
Q Consensus 177 ~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 244 (559)
+++.++++++.++++++ +.++.++++|+++|++.|...+...+++.|++|+++|++++++.+.+..+|
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 168 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168 (479)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence 99999999998888763 225678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhc--------CCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhc
Q 008624 245 ILLGYFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLR 316 (559)
Q Consensus 245 ~~~g~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (559)
.++++++++.+. +.. +||+.|++.+++.++..+..+++||+|+|+..+ ++.+++++..++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~---------~~~~~~~~~~~~~~ 238 (479)
T PRK10077 169 QLVVYFVNYFIARSGDASWLNTD-GWRYMFASEAIPALLFLMLLYFVPETPRYLMSR---------GKQEQAEGILRKIM 238 (479)
T ss_pred HHHHHHHHHHHhccCcccccccC-ChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHc---------CCHHHHHHHHHHHc
Confidence 999988876543 233 899999999888888777778899999886542 23334444444433
Q ss_pred cCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCch
Q 008624 317 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAA 396 (559)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (559)
+.... ....++....... +.. .....+. ..............+.+..+.+...+|.|.+.++.|.+. .
T Consensus 239 ~~~~~----~~~~~~~~~~~~~---~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~-~ 306 (479)
T PRK10077 239 GNTLA----TQALQEIKHSLDH---GRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST-D 306 (479)
T ss_pred CChhH----HHHHHHHHHHHHH---hhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCC-c
Confidence 22110 0111111111000 000 0011111 111122222233344445555566778888888888776 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhccccccc
Q 008624 397 DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476 (559)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (559)
...+.....++..+++.++.+++.||++||+.+..+.++.+++.+++...... ...........+++..++...+.+..
T Consensus 307 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (479)
T PRK10077 307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFAMSWGPVC 385 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhccccchh
Confidence 56677777888899999999999999999999999998888887776643321 11122233334444444544555677
Q ss_pred ceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH------HhhhhhHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 008624 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK------VFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQRTF 550 (559)
Q Consensus 477 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (559)
+.++.|.+|++.|+++.|+.+...+++.++++.+++.+. +..++...+.+.++..++..++.+++.+++++++.
T Consensus 386 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 465 (479)
T PRK10077 386 WVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 465 (479)
T ss_pred HHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCH
Confidence 789999999999999999999999999999987776544 46677666666665555555555556667666655
Q ss_pred ch
Q 008624 551 SS 552 (559)
Q Consensus 551 ~~ 552 (559)
||
T Consensus 466 ~~ 467 (479)
T PRK10077 466 EE 467 (479)
T ss_pred HH
Confidence 54
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=318.39 Aligned_cols=441 Identities=38% Similarity=0.554 Sum_probs=348.5
Q ss_pred HHHHHHHHHHHHhhhhhh--hccccccccccCCCCCCCCccccCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Q 008624 99 VILPFLFPALGGLLFGYD--IGATSGATISLQSPELSGTTWFNLSA--VQLGLVVSGSLYGALLGSILVYSIADFLGRKR 174 (559)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~ 174 (559)
.........++.+..+++ .+..++....+..+....+ ...+. .+.+|+.+.+.++..++++++|+++|++|||+
T Consensus 43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~--~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~ 120 (513)
T KOG0254|consen 43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYD--LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKK 120 (513)
T ss_pred hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344455667777888887 5666666666555432222 22233 56799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 008624 175 ELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 254 (559)
Q Consensus 175 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 254 (559)
.++++.+++.++.+++++++|+++++++|+++|+|.|....+.+.+++|..|++.||...+..+....+|..++..++..
T Consensus 121 ~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~ 200 (513)
T KOG0254|consen 121 TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYG 200 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777666
Q ss_pred hcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHH
Q 008624 255 QINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334 (559)
Q Consensus 255 l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (559)
..+...+||..+.+..+++++..+..+++||+|+|+.+ +++.+++++.++++++.++.+.. .+.+....
T Consensus 201 ~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~---------~g~~~~a~~~l~~l~g~~~~~~~--~~~~~~~~ 269 (513)
T KOG0254|consen 201 TSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE---------KGRLEEAKRSLKRLRGLSPEDVE--VELELLKI 269 (513)
T ss_pred hccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH---------cCChHHHHHHHHHHhCCCCcchH--HHHHHHHH
Confidence 54431389999999999999988888899999999997 48889999999999985422222 22211111
Q ss_pred HhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHH
Q 008624 335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTW 414 (559)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (559)
....+......+..+.++++....++..++..+..++++++++...+|.+.+++..+..... .......++..+++.+
T Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~ 347 (513)
T KOG0254|consen 270 KLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTL 347 (513)
T ss_pred HHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHH
Confidence 11111111122224666666556677888899999999999999999999999999987632 6666777788888888
Q ss_pred HHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcC-------chhHHHHHHHHHHHHHhhcccccccceeecccCCcc
Q 008624 415 IAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG-------GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR 487 (559)
Q Consensus 415 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 487 (559)
++.++.||+|||++++.+...+.+++++++....... ...+..+...+++...+..+..++.+.+.+|.+|.+
T Consensus 348 ~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~ 427 (513)
T KOG0254|consen 348 VATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR 427 (513)
T ss_pred HHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh
Confidence 8899999999999999999999999998887655432 235667777788888888899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh-hhHHHHHHHHHHHHHHHHHHHhhccccccCCchhh
Q 008624 488 TRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH-FSIKMVSTWFMILLFDWLVQFCRSCWEQRTFSSSL 554 (559)
Q Consensus 488 ~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (559)
.|+.+.++...++++.+++....+..+.+..+ ....+.+.+++.+.....++++.+++|+++.||..
T Consensus 428 ~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~ 495 (513)
T KOG0254|consen 428 LRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEIN 495 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHH
Confidence 99999999999999999988888877777766 34444444444443333677788899988877643
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=294.32 Aligned_cols=372 Identities=23% Similarity=0.238 Sum_probs=299.6
Q ss_pred HHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 008624 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 182 (559)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 182 (559)
++.+.++.|..+.+.....+.+|++.+| +|+|..+.|++.|.|.++++++.++...+.||+.||++++..+.+
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~d-------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAAD-------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 4556677788999999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcch
Q 008624 183 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW 262 (559)
Q Consensus 183 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 262 (559)
+.++++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++...+..++.++|.++|.++-+.. ||
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-GW 166 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GW 166 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-hH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888 99
Q ss_pred HHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccc
Q 008624 263 RYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT 341 (559)
Q Consensus 263 r~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (559)
|+.|++.++++++.++.. ..+| |+- ...+
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~------------------------------------------------~~~~ 196 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSE------------------------------------------------ISGS 196 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--Ccc------------------------------------------------CCCC
Confidence 999999999999887766 4577 210 0001
Q ss_pred ccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008624 342 DEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKV 420 (559)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 420 (559)
.+....+..+.+|+|..+...+...+.+..++. ...|...++++ .|++. ...++....++++.++|++++|++.
T Consensus 197 ~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~----~ftYi~P~L~~v~g~s~-~~vs~~Ll~~Gv~~~~Gn~~gGrl~ 271 (394)
T COG2814 197 LPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFA----LYTYIRPFLESVAGFSV-SAVSLVLLAFGIAGFIGNLLGGRLA 271 (394)
T ss_pred CCcchhHHHHHhcCchHHHHHHHHHHHHcchhh----hHHhHHHHHHHccCCCH-hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 112222356788888888777666555554443 55555555554 66666 8899999999999999999999999
Q ss_pred hhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHH
Q 008624 421 DDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN 500 (559)
Q Consensus 421 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 500 (559)
|| +.|+.+.....+.++..+.+.+.. .+.+..+...++++........ .......+.. ++.+..+.++.....
T Consensus 272 dr-~~~~~l~~~~~l~a~~~l~l~~~~----~~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~-p~~~~~a~sl~~aa~ 344 (394)
T COG2814 272 DR-GPRRALIAALLLLALALLALTFTG----ASPALALALLFLWGFAFSPALQ-GLQTRLARLA-PDAADLAGSLNVAAF 344 (394)
T ss_pred cc-cchhHHHHHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHhhhhhh-HHHHHhcccC-CCchHHHHHHHHHHH
Confidence 99 888888877777777777766543 3344444444443332222222 2223444533 488999999999999
Q ss_pred HHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 008624 501 FGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSC 544 (559)
Q Consensus 501 ~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (559)
++|..+|..+.|.+.|+.|+....+..+...++..++.....+.
T Consensus 345 nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 345 NLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999888888777777666665554443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=293.81 Aligned_cols=401 Identities=18% Similarity=0.114 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 008624 100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 179 (559)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~ 179 (559)
+.+++.+.++...+.+....++.+.|.+.++ .++|.+|+|++.+++.+.|+++-.+.|.++||.+.|+.+.++
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~-------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIED-------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 3445566677777788888888888877776 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHh--hhhcC
Q 008624 180 AVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--SFQIN 257 (559)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~l~~ 257 (559)
+++.++.+++++++++.+.+.++.+++|+.+|.-+|.+...+..|++++|||+..++++++-++|..+.|++. +.+..
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 88887
Q ss_pred CCcchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHh
Q 008624 258 AVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSL 336 (559)
Q Consensus 258 ~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (559)
+. +||..|++.++++++..+.. +..+|+|+-. +.++ .|+ .+++ ..+.. ++.
T Consensus 181 ~~-~w~~~f~~pgiiaiival~~~~~~rd~Pqs~------GLP~----ie~-------~~~d---------~~e~~-~~~ 232 (448)
T COG2271 181 HG-GWRAAFYFPGIIAIIVALILLFLLRDRPQSE------GLPP----IEE-------YRGD---------PLEIY-EEE 232 (448)
T ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHhCCCcccc------CCCC----HHH-------hhcC---------chhhh-hhh
Confidence 77 99999999999998877655 5677877410 0000 000 0000 00000 000
Q ss_pred hhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHH
Q 008624 337 KSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWI 415 (559)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (559)
++...-.....-++.+++||..|.+.++.++.+..-+. +..|.|.|+.+ .+++. ..+++....+-.++++|.++
T Consensus 233 ~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~g----i~dW~p~YL~e~k~~s~-~~a~~a~~lfE~agl~G~Ll 307 (448)
T COG2271 233 KENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYG----INDWGPLYLSEVKGFSL-VKANWAISLFEVAGLPGTLL 307 (448)
T ss_pred ccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHhcCCCH-HHHHHHHHHHHHHhhHHHHH
Confidence 00000001112245678899888888888877777765 88999999866 55665 88999999999999999999
Q ss_pred HHHHhhhc--CCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHH
Q 008624 416 AVAKVDDL--GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 493 (559)
Q Consensus 416 ~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 493 (559)
.||++||+ |||....+.+.+....+++..... .+.++.....+++..+++..+..-+.-..+.|..|++..|++.
T Consensus 308 ~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~---~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~ 384 (448)
T COG2271 308 AGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA---PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTAT 384 (448)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchh
Confidence 99999997 556555443333333333332221 1223333334444444443333334446678999999999999
Q ss_pred HHHHHHHHH-HHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008624 494 SLAVLTNFG-SNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRS 543 (559)
Q Consensus 494 g~~~~~~~~-g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (559)
|+...+.++ |...+....|.+.|.+||...+.+..++++++.++.....+
T Consensus 385 Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 385 GFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred chhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 88899999999999999999988877777766665554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=303.90 Aligned_cols=392 Identities=18% Similarity=0.192 Sum_probs=262.3
Q ss_pred HHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCCh--h--HHHH--HHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 008624 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSA--V--QLGL--VVSGSLYGALLGSILVYSIADFLGRKREL 176 (559)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~--~~g~--~~s~~~l~~~i~~~~~G~l~dr~Grr~~~ 176 (559)
+...+++.++.+||...++...+.+.++ |+.+. . .++. +.++.++++.++++++|+++||+|||+++
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 90 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKV-------FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL 90 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 4455678899999999988888877655 54222 1 1222 25778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhh--------HHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHH
Q 008624 177 IIAAVLYALGALTTAYAPGLGV--------LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG 248 (559)
Q Consensus 177 ~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 248 (559)
.+++++++++++++++++|+++ ++++|+++|++.|+..+...+++.|++|+++||++.++...+..+|.++|
T Consensus 91 ~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg 170 (490)
T PRK10642 91 AITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG 170 (490)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 89999999999999999999999999999999999999998888888888
Q ss_pred HHHhhhhc--------CCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCC
Q 008624 249 YFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPP 320 (559)
Q Consensus 249 ~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (559)
+.++..+. ... |||+.|++.++++++..++...+||+|+|...++ +.++.. .+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~-gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~---------~~~~~~-------~~-- 231 (490)
T PRK10642 171 AGVVVLISTIVGEANFLDW-GWRIPFFIALPLGIIGLYLRHALEETPAFQQHVD---------KLEQGD-------RE-- 231 (490)
T ss_pred HHHHHHHHHhcCHHHhcCc-cHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHH---------hhhhhc-------cc--
Confidence 86654432 234 9999999988777766556677899998754320 000000 00
Q ss_pred CCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHH
Q 008624 321 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADAT 399 (559)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 399 (559)
. ..+..+.++++++++ ..+........ .+.....++.+..|.|.++++ .+.+. ....
T Consensus 232 ------------------~-~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~-~~~~ 289 (490)
T PRK10642 232 ------------------G-LQDGPKVSFKEIATK-HWRSLLTCIGL-VIATNVTYYMLLTYMPSYLSHNLHYSE-DHGV 289 (490)
T ss_pred ------------------c-ccccccCCHHHHHHH-hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHH
Confidence 0 000112234555553 22222222222 222223334566788888854 57765 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhccccccccee
Q 008624 400 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLM 479 (559)
Q Consensus 400 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (559)
.......++.+++.++.|+++||+|||+.+..+.++..++...+..... .......+...++.+.+.+.... ....+
T Consensus 290 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~g-~~~~~ 366 (490)
T PRK10642 290 LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN--SNVIGLIFAGLLMLAVILNCFTG-VMAST 366 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6777778888999999999999999999887766544433322221111 12222222222222222222222 33356
Q ss_pred ecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh-hhHHHHHHHHHHHHHHHHHHHhhcccc
Q 008624 480 VSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH-FSIKMVSTWFMILLFDWLVQFCRSCWE 546 (559)
Q Consensus 480 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (559)
..|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+ +...+.+..+..++..+..+ +.++.+
T Consensus 367 ~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~ 433 (490)
T PRK10642 367 LPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETA 433 (490)
T ss_pred HHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-Hhcccc
Confidence 6789999999999998777777888899999999988765 34344333333333333333 334443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=296.59 Aligned_cols=363 Identities=18% Similarity=0.144 Sum_probs=267.5
Q ss_pred HHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 008624 108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 187 (559)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 187 (559)
++.+..........+.+|.+.++ +|.+..++|++.+.+.+++.++++++|+++||+|||+++..+.++.++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 88 (390)
T PRK03545 16 LAAFIFNTTEFVPVGLLSDIAQS-------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASH 88 (390)
T ss_pred HHHHHHHhHHHHHHcchHHHHhH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 33343333333444455666655 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHH
Q 008624 188 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYG 267 (559)
Q Consensus 188 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 267 (559)
+++++++|+++++++|+++|++.+...+...+++.|++|+++|+++++++..+.++|.++||++++.+.+.. +||+.|+
T Consensus 89 ~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~ 167 (390)
T PRK03545 89 VLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTTFL 167 (390)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877 9999999
Q ss_pred hhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccc
Q 008624 268 LSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 346 (559)
Q Consensus 268 ~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (559)
+.++++++..+.. ..+||.|+ + ++...
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~--------------~--------------------------------------~~~~~ 195 (390)
T PRK03545 168 AIGGGALITLLLLIKLLPLLPS--------------E--------------------------------------HSGSL 195 (390)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC--------------C--------------------------------------CcchH
Confidence 9998887765544 34555321 0 00000
Q ss_pred cchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 008624 347 GSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR 425 (559)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~ 425 (559)
++.++.+|++.++......++.....+. ...+.+.++++ .|.+. ...+.......++.+++.++.+++.||+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~ 270 (390)
T PRK03545 196 KSLPLLFRRPALVSLYLLTVVVVTAHFT----AYSYIEPFVQQVAGLSE-NFATLLLLLFGGAGIIGSVLFSRLGNRHPS 270 (390)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 1234567777666544433333322222 33455555555 56666 678888888999999999999999999998
Q ss_pred chhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHH
Q 008624 426 RPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNA 505 (559)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 505 (559)
|... .+..+..++...+.... .+.+......++.+.+. ....+.......+..| +.+++++|+.+...++|..
T Consensus 271 ~~~~-~~~~~~~~~~~~l~~~~----~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~ 343 (390)
T PRK03545 271 GFLL-IAIALLLVCLLLLLPAA----NSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIG 343 (390)
T ss_pred hHHH-HHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHH
Confidence 7643 44444444433332221 22333333333333332 2333334456667766 6889999999999999999
Q ss_pred HHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008624 506 IVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCR 542 (559)
Q Consensus 506 i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (559)
+||.+.|.+.|..|+...+...+.+.++..++.....
T Consensus 344 ~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 344 AGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999888877776666555554444
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=308.40 Aligned_cols=383 Identities=23% Similarity=0.287 Sum_probs=279.3
Q ss_pred ccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhh
Q 008624 138 FNLS---AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAM 214 (559)
Q Consensus 138 ~~~s---~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 214 (559)
+|++ ..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++++++++++.++++|++.|++.+...
T Consensus 119 ~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~ 198 (505)
T TIGR00898 119 WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198 (505)
T ss_pred ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchH
Confidence 9998 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHh
Q 008624 215 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 294 (559)
Q Consensus 215 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 294 (559)
+...+++.|++|+++|+++.++...+..+|.++++.++..+. +||+.|++.+++.++..+..+++||+|+|+..+
T Consensus 199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~- 273 (505)
T TIGR00898 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQ- 273 (505)
T ss_pred HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHC-
Confidence 999999999999999999999999999999999999987653 599999999998888877778899999998764
Q ss_pred hcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhh
Q 008624 295 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT 374 (559)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (559)
++.+++.+.+++..+.+......+.. ....+ ++...++++.+++++++++.++...+...+.++....
T Consensus 274 --------~~~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (505)
T TIGR00898 274 --------GRIEEALKILQRIAKINGKKLPAEVL-SLSLE---KDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF 341 (505)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCCCHHHH-hhhhh---hhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 44455555555544333222111110 00000 0001111235678899998887776655544443322
Q ss_pred CcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchh
Q 008624 375 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP 454 (559)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (559)
.++.. +.+....+.+ ........++..+++.++.+++.||+|||+.+.++.++.+++++++.... ....
T Consensus 342 ~~~~~----~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---~~~~ 410 (505)
T TIGR00898 342 SYYGL----VLDLGNLGGN----IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---VDLY 410 (505)
T ss_pred HHHHH----hccccccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---CCch
Confidence 22112 2222333332 33445566778889999999999999999999988888887776665532 1222
Q ss_pred HHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHH
Q 008624 455 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLF 534 (559)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 534 (559)
+......++..++.. ...+..+.+..|.+|++.|+++.|+.++...+|++++|.+.+ .+..+....+.+.+++.++.
T Consensus 411 ~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 411 FLRTALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHH
Confidence 333333333333332 233455688899999999999999999999999999999988 44555566666666555555
Q ss_pred HHHHHHhhccccccCCch
Q 008624 535 DWLVQFCRSCWEQRTFSS 552 (559)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~ 552 (559)
.++.+ +.+++++++.++
T Consensus 488 ~~~~~-~lpet~~~~l~~ 504 (505)
T TIGR00898 488 GILTL-FLPETKGVPLPE 504 (505)
T ss_pred HHHHH-cCcCCCCCCCCC
Confidence 55444 445666665544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=299.39 Aligned_cols=396 Identities=14% Similarity=0.107 Sum_probs=272.9
Q ss_pred HHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 008624 106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 185 (559)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 185 (559)
..++.++..++...++..+|.+.++ +|++..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLAD-------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 4445555566666666677777665 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHH
Q 008624 186 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 265 (559)
Q Consensus 186 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 265 (559)
+.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++++.+.++|.++++.+++.+.+.. +||+.
T Consensus 101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~ 179 (434)
T PRK11663 101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWRYG 179 (434)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877 99999
Q ss_pred HHhhhHHHHHHHH-HHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccc
Q 008624 266 YGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 344 (559)
Q Consensus 266 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (559)
|++.+++.++..+ ..++++|+|++...+ . .++.++ + ..+.. ++......
T Consensus 180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~------~-~~~~~~--------------~---~~~~~------~~~~~~~~ 229 (434)
T PRK11663 180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLP------S-VGEWRH--------------D---ALELA------QQQEGAGL 229 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHhhcCCC------C-cccccc--------------c---ccccc------hhccccCC
Confidence 9998887765544 345678876421100 0 000000 0 00000 00000000
Q ss_pred cccc-h-hhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008624 345 SEGS-F-LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD 421 (559)
Q Consensus 345 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 421 (559)
.... + ...++++.++...+...+.... ...+..|.|.+++ +.|++. .+++.......++.++++++.|++.|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~~g~~~~g~l~d 304 (434)
T PRK11663 230 SRKEILTKYVLLNPYIWLLSFSYVLVYVV----RAAINDWGNLYMSETLGVDL-VTANSAVSMFELGGFIGALVAGWGSD 304 (434)
T ss_pred ChhhhHHHHHhcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 0001 1 1245566555544433333332 2346668888884 467776 77888888999999999999999999
Q ss_pred hc--CCchhh-hhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHH
Q 008624 422 DL--GRRPLL-IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL 498 (559)
Q Consensus 422 ~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 498 (559)
|+ ++|+.. ........+....+.... .......... ++..+....+..........|.+|++.++++.|+.++
T Consensus 305 r~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 380 (434)
T PRK11663 305 KLFNGNRGPMNLIFAAGILLSVGSLWLMP---FASYVMQAAC-FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGL 380 (434)
T ss_pred HhccCCccHHHHHHHHHHHHHHHHHHHcc---cccHHHHHHH-HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHH
Confidence 98 333332 222222222221111111 1112222122 2222222211111223456788999999999999999
Q ss_pred HHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008624 499 TNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQR 548 (559)
Q Consensus 499 ~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (559)
..++|++++|.+.|.+.|..|+...+...+++.++..+......++.+++
T Consensus 381 ~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 381 FAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999999999999999999988888877777666655554444444433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=305.55 Aligned_cols=399 Identities=16% Similarity=0.071 Sum_probs=275.4
Q ss_pred HHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 008624 99 VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII 178 (559)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~ 178 (559)
.+.++.+..++.+....+...++...|.+.++ +|++.++.|++.+++.++++++++++|+++||+|||+++.+
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~ 99 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST-------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF 99 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence 44456666666677777888888888877766 99999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHh-----hcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 008624 179 AAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 253 (559)
Q Consensus 179 ~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 253 (559)
+.++++++.++.++ +++++.+++.|+++|++.+...+...+++.|++|+++||+++|++..+.++|.+++++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 100 LLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence 88888877776655 6899999999999999999999999999999999999999999999999999999999887
Q ss_pred hhcCCC--cchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHH
Q 008624 254 FQINAV--GGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIE 330 (559)
Q Consensus 254 ~l~~~~--~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (559)
++.... .+||..|.+.++++++..++. ++.+++|+... ..+. ++ . ..... . . +
T Consensus 180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~---------~~~~-~~---~---~~~~~--~----~--~ 235 (467)
T PRK09556 180 WGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELG---------WGKA-EE---I---FGEPI--S----E--E 235 (467)
T ss_pred HHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcC---------CCCh-hh---c---ccCcc--c----h--h
Confidence 665532 269999988888877665544 44566653100 0000 00 0 00000 0 0 0
Q ss_pred HHHHHhhhcccccccccc-hhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHH
Q 008624 331 DTLVSLKSSYTDEKSEGS-FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVF 408 (559)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 408 (559)
+ . ..+.++...... .+..++++.++...+..++.... ......|.|.|+++ .|.+. .+++.......++
T Consensus 236 ~--~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~p~yl~~~~g~s~-~~a~~~~~~~~~~ 306 (467)
T PRK09556 236 D--K--ETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIV----RIGIDNWSPVYAFQELGFSK-EDAINTFTLFEIG 306 (467)
T ss_pred h--h--ccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHH
Confidence 0 0 000000000000 12356777666555443333332 23467788988855 67776 7788888888899
Q ss_pred HHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcch
Q 008624 409 KLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT 488 (559)
Q Consensus 409 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 488 (559)
.+++.++.|+++||+++|+.+.....+..++..++... . ..+.+...+..++.+.+ ..+..........|.+|++.
T Consensus 307 ~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~p~~~ 382 (467)
T PRK09556 307 ALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ-H--ATSEYMYLASLFALGFL-VFGPQLLIGVAAVGFVPKKA 382 (467)
T ss_pred HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH-h--cCcHHHHHHHHHHHHHH-HhhHHHHHHHHHHhhcchhh
Confidence 99999999999999999887665444333332222211 1 12222222222222222 11111111245569999999
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHhhHHhHH------------hhhhhHHHHHHHHHHHHHHHHHHHh
Q 008624 489 RGRGISLAVLTNFG-SNAIVTFAFSPLKV------------FIHFSIKMVSTWFMILLFDWLVQFC 541 (559)
Q Consensus 489 ~~~~~g~~~~~~~~-g~~i~~~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (559)
+|++.|+.+..+++ |++++|.+.|.+.| ..||...+.+..++.++..++.+.+
T Consensus 383 ~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 383 IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 77999999999999 5678887777766666555544444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=296.00 Aligned_cols=360 Identities=23% Similarity=0.252 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 008624 98 SVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI 177 (559)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~ 177 (559)
+.+.++.++.+..++.+++....+...|.+.++ +|.++.+.+++.+++.++..+++++.|+++||+|||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 84 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQE-------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILI 84 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence 334456666677788899988888888888766 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcC
Q 008624 178 IAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257 (559)
Q Consensus 178 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 257 (559)
.+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 164 (406)
T PRK11551 85 VSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG 164 (406)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCcchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHh
Q 008624 258 AVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSL 336 (559)
Q Consensus 258 ~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (559)
.. +||+.|++.+++.++..++. .++||+|++...+ + . ++ ...
T Consensus 165 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~--------------~---~~-~~~--------- 207 (406)
T PRK11551 165 DA-AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAA---------G--------------A---GK-QRA--------- 207 (406)
T ss_pred cc-CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhcc---------C--------------c---ch-hhh---------
Confidence 76 99999999887666555443 5678876532110 0 0 00 000
Q ss_pred hhcccccccccchhhhccCC---chhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHH
Q 008624 337 KSSYTDEKSEGSFLEVFQGP---NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMT 413 (559)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (559)
......++++ ......+...+. .........|.|.++++.|.+. ...+.......++.+++.
T Consensus 208 ----------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~ 272 (406)
T PRK11551 208 ----------PVLRALFGEGRATATLLLWISYFFT----LIVLYFLLNWLPSLLVGQGLSR-SQAGLVQIAFNIGGALGS 272 (406)
T ss_pred ----------hhHHHHhhhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCh-hhhhHHHHHHHHHHHHHH
Confidence 0000111111 111111111111 1222345667888888888876 778888999999999999
Q ss_pred HHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHH
Q 008624 414 WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 493 (559)
Q Consensus 414 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 493 (559)
++.|++.||+++|+.+..+.+...++.+.+... ...+......++.+ ....+..+...++..|.+|++.|+++.
T Consensus 273 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~~~ 346 (406)
T PRK11551 273 LLIGALMDRLRPRRVVLLIYAGILASLAALAAA-----PSFAGMLLAGFAAG-LFVVGGQSVLYALAPLFYPTQVRGTGV 346 (406)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHcchhhhhhhh
Confidence 999999999999998877666555554444321 22222222222222 222233445567888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHhhhhhH
Q 008624 494 SLAVLTNFGSNAIVTFAFSPLKVFIHFSI 522 (559)
Q Consensus 494 g~~~~~~~~g~~i~~~~~g~~~~~~g~~~ 522 (559)
|+.+....+|..++|.+.|.+.+..+...
T Consensus 347 g~~~~~~~~g~~~g~~~~g~l~~~~~~~~ 375 (406)
T PRK11551 347 GAAVAVGRLGSMAGPLLAGQLLALGRSTV 375 (406)
T ss_pred hHHHHhhhHHHHHHhhhHhhhhccCCchH
Confidence 99999999999999999999998765443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=293.23 Aligned_cols=389 Identities=17% Similarity=0.174 Sum_probs=268.6
Q ss_pred HHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 008624 102 PFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV 181 (559)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~ 181 (559)
.+.+++++.++.+++...++...+.+.++ +|++.+++|++.+++.+++++++++.|+++||+|||+++..+++
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 81 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKD-------LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV 81 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhh-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence 45555666678888888888888876665 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCC---
Q 008624 182 LYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA--- 258 (559)
Q Consensus 182 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--- 258 (559)
+++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++++++++.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred --CcchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHH
Q 008624 259 --VGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS 335 (559)
Q Consensus 259 --~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (559)
..|||+.|++.++++++..++. +++||+|+... ... ++..+...+..+ ......+..+..
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~------~l~-~~~~~~~~~~~~---~~~~~~~~~~~~------- 224 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK------WLD-EEDKKALKEMID---NDQLTLEQPEGA------- 224 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC------CCC-HHHHHHHHHHHH---hccccccccccc-------
Confidence 2399999999888877655544 66788874100 000 000111111111 000000000000
Q ss_pred hhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHc--CCCCchhHHHHHHHHHHHHHHHH
Q 008624 336 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA--GFSAAADATRVSVVIGVFKLVMT 413 (559)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 413 (559)
. ..........+++++ ++.++... +.+++....+..+..|.|.++++. +.+. ..++.......++.+++.
T Consensus 225 ~--~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~-~~~~~~~~~~~l~~~~g~ 296 (412)
T TIGR02332 225 F--AHAAMPQRSMLREIF-TPAIMLYT----LAYFCLTNTLSAINIWTPQILQSFNQGSSN-IMIGLLAAIPQFCTIFGM 296 (412)
T ss_pred c--ccccccHHHHHHHhc-ChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-HHhHHHhhHHHHHHHHHH
Confidence 0 000000011233333 34333332 333333334455778999999875 3444 678888999999999999
Q ss_pred HHHHHHhhhcCCchhh-hhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhH
Q 008624 414 WIAVAKVDDLGRRPLL-IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRG 492 (559)
Q Consensus 414 ~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 492 (559)
++.|+++||+++|+.. ....++..++. ++... .......+...++...+.. ...+..+....|.+|++.|+++
T Consensus 297 l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a 370 (412)
T TIGR02332 297 IWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA----TDHNLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIA 370 (412)
T ss_pred HHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh----cCCHHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHH
Confidence 9999999999977753 33333333332 22211 1122222211222111111 1122333555678899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHhhh-hhHHHHHHH
Q 008624 493 ISLAVLTNFGSNAIVTFAFSPLKVFIH-FSIKMVSTW 528 (559)
Q Consensus 493 ~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~ 528 (559)
.|+.+...++|++++|.+.|.+.|..| |...+.+.+
T Consensus 371 ~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~ 407 (412)
T TIGR02332 371 IAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVA 407 (412)
T ss_pred HHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHH
Confidence 999999999999999999999999886 665554443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=287.34 Aligned_cols=359 Identities=14% Similarity=0.074 Sum_probs=263.2
Q ss_pred ccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchh
Q 008624 118 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197 (559)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 197 (559)
..+++.+|.+.++ +|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.++++++++++
T Consensus 26 ~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~ 98 (393)
T PRK09705 26 TSVGPLLPQLRQA-------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSA 98 (393)
T ss_pred hccchhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchH
Confidence 5566778887776 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHH
Q 008624 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 277 (559)
Q Consensus 198 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 277 (559)
.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+|+.+++.+.++..+||+.+.+.++..++..
T Consensus 99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996 78999999999999999999999999888775589999877666554443
Q ss_pred HHHhccC-CchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCC
Q 008624 278 IGMWSLP-PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356 (559)
Q Consensus 278 ~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (559)
+..+... +.|+ + +++.+...++.++++
T Consensus 178 ~~~~~~~~~~~~---------------------------------~-------------------~~~~~~~~~~~l~~~ 205 (393)
T PRK09705 178 FAWWWQSAREVA---------------------------------S-------------------SHKTTTTPVRVVFTP 205 (393)
T ss_pred HHHHHHhcCCCc---------------------------------c-------------------ccCCCcCCcccccCH
Confidence 3332221 1110 0 000001123344555
Q ss_pred chhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHH
Q 008624 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 436 (559)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 436 (559)
..+...+...+... .+.....|.|.++++.+.+. .+++......+++.++++++.+++.||.++|+.+..+..+.
T Consensus 206 ~~~~l~~~~~~~~~----~~~~~~~~lp~~l~~~g~s~-~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~ 280 (393)
T PRK09705 206 RAWTLGVYFGLING----GYASLIAWLPAFYIEIGASA-QYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ 280 (393)
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 44444333322222 33346678888888888776 78899999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccC-CcchhhhHHHHHHHHHHHHHHHHHHhhHHhH
Q 008624 437 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF-PLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515 (559)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 515 (559)
.++..++.... ....... .++.+.+.+. ..+.......+.. |++.+++..|+.+...++++.++|.+.|++.
T Consensus 281 ~~~~~~~~~~~----~~~~~~~--~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 281 LVGFCGFIWLP----LQLPVLW--AMVCGLGLGG-AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred HHHHHHHHHcc----chHHHHH--HHHHHHhccc-hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665544321 1111111 1222222222 2233333444555 4678999999999999999999999999999
Q ss_pred Hhhh-hhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008624 516 VFIH-FSIKMVSTWFMILLFDWLVQFCRSCWEQR 548 (559)
Q Consensus 516 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (559)
|..| +...+.+..+++++..+....+.++++.|
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 354 SISGNYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9987 44445555555554444444555555444
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=294.21 Aligned_cols=373 Identities=16% Similarity=0.179 Sum_probs=273.0
Q ss_pred HHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 008624 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 182 (559)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 182 (559)
+..+.++.+..+++.....+..+.+.++ +|+++.+.+++.+++.+++.++++++|+++||+|||++++++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~ 92 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKAD-------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 3445566677788888888887777666 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcch
Q 008624 183 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW 262 (559)
Q Consensus 183 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 262 (559)
.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+.. +|
T Consensus 93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w 171 (426)
T PRK12307 93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-GW 171 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-CH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877 99
Q ss_pred HHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccc
Q 008624 263 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 342 (559)
Q Consensus 263 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (559)
|+.|++.++..++...+....||++++...+ ...+.+... ...
T Consensus 172 ~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~---------------------~~~~~~~~~----------------~~~ 214 (426)
T PRK12307 172 RAAFFVGLLPVLLVIYIRARAPESKEWEEAK---------------------LSGKGKHSQ----------------SAW 214 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCChHHHHhh---------------------hhccccccc----------------cch
Confidence 9999886544443333333356654332110 000000000 000
Q ss_pred cccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008624 343 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 422 (559)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 422 (559)
......++++++++.++.......+.+ ..+.....+..+.|.++++.+.+. ...+.......++.+++.++.+++.||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~g~l~dr 292 (426)
T PRK12307 215 SVFSLSMKGLFNRAQFPLTLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDT-GVVSNLMTAAAFGTVLGNIVWGLCADR 292 (426)
T ss_pred hhhhHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001123567777776665443332222 222222235567788888888776 677888888899999999999999999
Q ss_pred cCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHH
Q 008624 423 LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG 502 (559)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 502 (559)
++||+.+..+.++..+..+.+.... ......+....+..+....+..+....++.|.+|++.|+++.|+.+....+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 368 (426)
T PRK12307 293 IGLKKTFSIGLLMSFLFIFPLFRIP----QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAAT 368 (426)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhH
Confidence 9999988877766655544433221 112222211111111222222333446678999999999999999999999
Q ss_pred HHHHHHHhhHHhHHhhhhhHHHHH
Q 008624 503 SNAIVTFAFSPLKVFIHFSIKMVS 526 (559)
Q Consensus 503 g~~i~~~~~g~~~~~~g~~~~~~~ 526 (559)
++.++|.+.|.+.+..|+.....+
T Consensus 369 ~~~~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 369 SGTFNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHH
Confidence 999999999999999986654333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=289.62 Aligned_cols=374 Identities=20% Similarity=0.206 Sum_probs=249.8
Q ss_pred HHHHHHHHHhhhhhhhccccccccccCCCCCCCCccc---cCChhHHHHHH---HHHHHHHHHHHHHHHHHHhhhchhHH
Q 008624 102 PFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWF---NLSAVQLGLVV---SGSLYGALLGSILVYSIADFLGRKRE 175 (559)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~~g~~~---s~~~l~~~i~~~~~G~l~dr~Grr~~ 175 (559)
.+...+++.+++.+|...++...+.+.++ + +.+..+.+... ++..++..++++++|+++||+|||++
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~ 95 (432)
T PRK10406 23 AIVGASSGNLVEWFDFYVYSFCSLYFAHI-------FFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS 95 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34455677788899999888877776655 4 34555444444 44445555999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchh--------hHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHH
Q 008624 176 LIIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 247 (559)
Q Consensus 176 ~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 247 (559)
+..++++++++++++++++++. .++++|+++|++.|...+...+++.|++|+++|+++.++.+.+...|.++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~ 175 (432)
T PRK10406 96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL 175 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 58999999999999999999999999999999999999999988899888
Q ss_pred HHHHhhhhcC--------CCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCC
Q 008624 248 GYFVGSFQIN--------AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP 319 (559)
Q Consensus 248 g~~~~~~l~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (559)
+++++..+.. .. |||++|++.++++++...+...+||+|++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~-gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~--------------------------- 227 (432)
T PRK10406 176 ALLVVVVLQQTLEDAELREW-GWRIPFALGAVLAVVALWLRRQLDETSQQETR--------------------------- 227 (432)
T ss_pred HHHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCCCCchHHHh---------------------------
Confidence 8877655431 34 99999999888877765555567776542100
Q ss_pred CCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhH
Q 008624 320 PGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADA 398 (559)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 398 (559)
..++..+++++++++..+...+...+ .....++.+..|.|.++++ .+.+. .+.
T Consensus 228 ----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~lp~~l~~~~g~s~-~~~ 281 (432)
T PRK10406 228 ----------------------ALKEAGSLKGLWRNRRAFIMVLGFTA---AGSLCFYTFTTYMQKYLVNTAGMHA-NVA 281 (432)
T ss_pred ----------------------hhcccccHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCH-HHH
Confidence 00001235566665544433322221 1112233466788888755 57665 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccce
Q 008624 399 TRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL 478 (559)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (559)
+.......++..++.++.|+++||++||+.+....++.++....+..... .....+..+.+..+...+.+ ...+....
T Consensus 282 ~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 359 (432)
T PRK10406 282 SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-NVSSPYAAFGLVMCALLIVS-FYTSISGI 359 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 77777777788888889999999999998876655543333322211111 11122222222211111211 12233456
Q ss_pred eecccCCcchhhhHHHHHHHHHHH-HHHHHHHhhHHhHHhhhhhH-HHHHHHHHHHHHHHHHH
Q 008624 479 MVSEIFPLRTRGRGISLAVLTNFG-SNAIVTFAFSPLKVFIHFSI-KMVSTWFMILLFDWLVQ 539 (559)
Q Consensus 479 ~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~g~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 539 (559)
+..|.+|++.|+++.|+.+...++ ++...|.+.+ +.+..|.+. .+.+.+++.++..+..+
T Consensus 360 ~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 360 LKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999987665 3445677666 446666433 33334344443333333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=288.65 Aligned_cols=395 Identities=15% Similarity=0.068 Sum_probs=283.2
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 008624 100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 179 (559)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~ 179 (559)
+..+..++++.++..+|.+.++..+|.+..+ +|.+.++.+|+.+.|.++++++.+++|+++||+|||++++.+
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~ 77 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMT-------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLG 77 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4457777888899999999999999999877 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcC-CCCccchhhhHHHHHHHHHHHHHHHHhhhhcCC
Q 008624 180 AVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQINA 258 (559)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 258 (559)
.++++++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|+++++++.....+|..+||.+++.+.+.
T Consensus 78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999998888887766 678999999999999999999999999999998
Q ss_pred CcchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHH---HHhhccCCCCCcccHHHHHH---
Q 008624 259 VGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISA---LGKLRRRPPGDKLSERQIED--- 331 (559)
Q Consensus 259 ~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--- 331 (559)
. +|||.|++..+++++.+++. +++|+.++. ..++.+..+........ ...+.......+........
T Consensus 158 ~-gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~-----~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 231 (495)
T PRK14995 158 F-YWGSVFLINVPIVLVVMGLTARYVPRQAGR-----RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLT 231 (495)
T ss_pred C-ChHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 7 99999999988877766544 456765420 00011111110000000 00011111111111000000
Q ss_pred ----HHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHH
Q 008624 332 ----TLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIG 406 (559)
Q Consensus 332 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 406 (559)
...-...+. +.+.+.-..+++|++.+....+..++..... ....++.|.+++. .|.++ .+++....+..
T Consensus 232 ~~~~l~~f~~~e~-~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lq~v~g~s~-~~ag~~~~~~~ 305 (495)
T PRK14995 232 GALLLGLFIRTQL-AASRPMIDMRLFTHRIILSGVVMAMTAMITL----VGFELLMAQELQFVHGLSP-LEAGMFMLPVM 305 (495)
T ss_pred HHHHHHHHHHHHh-cCCCCCcCHHHhCCcccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 000000011 1111222356788877665554443333332 2355677888876 56665 89999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCc
Q 008624 407 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL 486 (559)
Q Consensus 407 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 486 (559)
++..++.++.|++.||+++|+.+..+.++.+++.+++..... ....+......++.+.+.+....+. .....+..|+
T Consensus 306 ~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~G~g~g~~~~~~-~~~~~~~~~~ 382 (495)
T PRK14995 306 VASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF--STQQWQAWGLMALLGFSAASALLAS-TSAIMAAAPP 382 (495)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCH
Confidence 999999999999999999999888887777776665544321 1223333333444444444433333 3556677899
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhHHhHH
Q 008624 487 RTRGRGISLAVLTNFGSNAIVTFAFSPLKV 516 (559)
Q Consensus 487 ~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 516 (559)
++++.+.++.++.+++|+.+|+.+.|.+.+
T Consensus 383 ~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 383 EKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888765
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=257.57 Aligned_cols=390 Identities=17% Similarity=0.203 Sum_probs=289.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+|.+..|..++......+..+++..||.++|++|||+.+.+..+..++...+.+.++|+..+++.|.+.|+|.|+ .|..
T Consensus 108 w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~ 186 (528)
T KOG0253|consen 108 WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVD 186 (528)
T ss_pred hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcC
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG 297 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 297 (559)
.++-.|..|..+|...+-.. ..+.+|.++...++....... ||||.......+..+.++..+++||||||...+
T Consensus 187 ~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~---- 260 (528)
T KOG0253|consen 187 SAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAK---- 260 (528)
T ss_pred HHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhc----
Confidence 99999999999999887777 899999999999998888888 999999888888888888889999999999874
Q ss_pred CCchhhHHHHHHHHHHhhccCCCCCcccH-------HHHHHHHHHhhh--cccccccccchhhhccCCchhHHHHHHHHH
Q 008624 298 KGSLQEYKEQAISALGKLRRRPPGDKLSE-------RQIEDTLVSLKS--SYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 368 (559)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (559)
++++++.+.++++.+.|...-... ++.+++.....+ ....++......+++... +++..+.....
T Consensus 261 -----G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~-lrkttlllw~i 334 (528)
T KOG0253|consen 261 -----GDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPK-LRKTTLLLWRI 334 (528)
T ss_pred -----CChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChH-HHHHHHHHHHH
Confidence 778888888888766554432211 111111111111 112223344455555543 33333322233
Q ss_pred HHHHhhCcchhhhchHHHHHHc--------------------CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 008624 369 LFQQITGQPSVLYYAGPILQSA--------------------GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 428 (559)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 428 (559)
++.....++........+++.. ..+. ..-..-..+..+..+.|.++.+++.||+|||+.
T Consensus 335 wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~-~~dYrdllitslaefPGlLIt~~iverlGRKkT 413 (528)
T KOG0253|consen 335 WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSV-AKDYRDLLITSLAEFPGLLITGVIVERLGRKKT 413 (528)
T ss_pred HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccc-hhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH
Confidence 3322222222333333322211 1111 223344566778889999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHH
Q 008624 429 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 508 (559)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 508 (559)
+..++++.+++.+++... ..........+..-.+...++. ..+.|+.|.+|+..|+++.|.+.....+|+++.|
T Consensus 414 Mal~l~~f~iflfll~~c-----~~rn~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p 487 (528)
T KOG0253|consen 414 MALSLILFGIFLFLLTTC-----KTRNAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSP 487 (528)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhh
Confidence 999999888888777654 2233334444444555555554 6679999999999999999999999999999999
Q ss_pred HhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccccC
Q 008624 509 FAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQRT 549 (559)
Q Consensus 509 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (559)
.+. +......+.+..+...+++++.+...++..++|+|.
T Consensus 488 ~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 488 VIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred HHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 988 444445555666667777777888888888888775
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=280.77 Aligned_cols=380 Identities=17% Similarity=0.149 Sum_probs=252.0
Q ss_pred HHHHHHHHHhhhhhhhccccccccccCCCCCCCCccc--cCChhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhchhH
Q 008624 102 PFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWF--NLSAVQLGLVV-----SGSLYGALLGSILVYSIADFLGRKR 174 (559)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~g~~~-----s~~~l~~~i~~~~~G~l~dr~Grr~ 174 (559)
.+....++.+.+++|...++...+....++ + +.++. .+++. ++.+++..+++++.|+++||+|||+
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~ 95 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITAALVFNRE------FFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH
Confidence 344556677888999888776655332221 2 44444 34443 3455677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcchh--------hHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHH
Q 008624 175 ELIIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL 246 (559)
Q Consensus 175 ~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 246 (559)
+++++.+++++++++++++++++ .++++|+++|++.|...+....++.|++|+++|++..+..+.+..+|.+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~ 175 (438)
T PRK09952 96 MLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL 175 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcC--------CCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccC
Q 008624 247 LGYFVGSFQIN--------AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRR 318 (559)
Q Consensus 247 ~g~~~~~~l~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (559)
++..+...+.. .. +||++|++.+++.++...+....||+|+|...+.+. +
T Consensus 176 l~~~~~~~l~~~~~~~~~~~~-gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~---------------------~ 233 (438)
T PRK09952 176 LSTGLVSLISMMTTDEQFLSW-GWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ---------------------A 233 (438)
T ss_pred HHHHHHHHHHHhCCHHHhhcc-ChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc---------------------c
Confidence 98877665542 34 999999998887766554445678887653321000 0
Q ss_pred CCCCcccHHHHHHHHHHhhhcccccccccc-hhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCch
Q 008624 319 PPGDKLSERQIEDTLVSLKSSYTDEKSEGS-FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAA 396 (559)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 396 (559)
+.+.+.+ .+.+++++..+...+.. .+......+....|.|.++++ .+.+. .
T Consensus 234 -----------------------~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~y~~~~~g~s~-~ 286 (438)
T PRK09952 234 -----------------------AAKKRIPVIEALLRHPGAFLKIIAL---RLCELLTMYIVTAFALNYSTQNLGLPR-E 286 (438)
T ss_pred -----------------------cccccCCHHHHHHHchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCH-H
Confidence 0000001 11234444333322211 111222223355677777754 56654 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhccccccc
Q 008624 397 DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476 (559)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (559)
.........++..+++.++.|+++||++||+.+..+.++..++.+.+..... ..+..+..+...++...+.+ ...+..
T Consensus 287 ~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~ 364 (438)
T PRK09952 287 LFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE-AQSIFWIVFFSIMLANIAHD-MVVCVQ 364 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4444555566777888899999999999999887776655444333322111 11122222222222222222 223345
Q ss_pred ceeecccCCcchhhhHHHHHHHHH-HHHHHHHHHhhHHhHHhhh--hhHHHHHHHHHHHHHHHHHH
Q 008624 477 WLMVSEIFPLRTRGRGISLAVLTN-FGSNAIVTFAFSPLKVFIH--FSIKMVSTWFMILLFDWLVQ 539 (559)
Q Consensus 477 ~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~i~~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 539 (559)
+++..|.+|++.|+++.|+.+... .+++.++|.+.+.+.+..+ |...+.+..++.++..+..+
T Consensus 365 ~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 365 QPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred HHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999977664 4889999999999988653 44555555555554444443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=282.89 Aligned_cols=384 Identities=18% Similarity=0.201 Sum_probs=269.2
Q ss_pred HHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 008624 101 LPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAA 180 (559)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~ 180 (559)
..+..+.++.+..+++....+...+.+.++ +|++..+.+++.+++.++..+++++.|+++||+|||++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGE-------FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 335566677788888888888888887766 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCc
Q 008624 181 VLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG 260 (559)
Q Consensus 181 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~ 260 (559)
++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877651
Q ss_pred -chHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhc
Q 008624 261 -GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSS 339 (559)
Q Consensus 261 -~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (559)
+||+.|++.++..++..+....+||++++...+ ++.++..+..++..+.++. .....
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-------~~~~~------ 222 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKH---------AGKALVRTMVDILYGGEHR-------IANIV------ 222 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHh---------hhhhhhhhHHHHHhccchh-------hhhhh------
Confidence 499999987777666666666788876543221 0000000111111100000 00000
Q ss_pred ccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008624 340 YTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVA 418 (559)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 418 (559)
++.....++..+ ..+.......+..............+.|.++. +.+.+. .+.+.+.....++.+++.++.++
T Consensus 223 ---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~ 296 (405)
T TIGR00891 223 ---MTLAAAMVQSAG--KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSP-HTVANIVVFSNIGAIVGGCVFGF 296 (405)
T ss_pred ---hhhhHHhhhhhh--hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011011 11111111111111111111234445666664 467776 78888889999999999999999
Q ss_pred HhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHH
Q 008624 419 KVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL 498 (559)
Q Consensus 419 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 498 (559)
+.||++||+.+..+..+..+....+... ....+......++...+ ..+..+....++.|.+|++.|+++.|+.+.
T Consensus 297 l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 371 (405)
T TIGR00891 297 LGDWLGRRKAYVCSLLAGQLLIIPVFAI----GANVAVLGLGLFFQQML-VQGIWGILPKHLGEYFPTDQRAAGLGFTYQ 371 (405)
T ss_pred HHHHhCchhhhHHHHHHHHHHHHHHHHh----CCchHHHHHHHHHHHHH-HccchhhHHHHHhhhCCcchhHHHhhHHHH
Confidence 9999999998877665543332222211 12222222222233322 223334455778899999999999999999
Q ss_pred HHHHHHHHHHHhhHHhHHhhh-hhHHH
Q 008624 499 TNFGSNAIVTFAFSPLKVFIH-FSIKM 524 (559)
Q Consensus 499 ~~~~g~~i~~~~~g~~~~~~g-~~~~~ 524 (559)
..++|+.++|.+.|.+.|..| +...+
T Consensus 372 ~~~~g~~~g~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 372 LGNLGGALAPIIGALLAQRLDEYGTAL 398 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhH
Confidence 999999999999999999999 54433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=275.03 Aligned_cols=345 Identities=18% Similarity=0.189 Sum_probs=252.6
Q ss_pred cccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhh
Q 008624 119 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV 198 (559)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 198 (559)
...+.+|++.++ +|+++++.++..+++.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.
T Consensus 38 ~~~~~l~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
T PRK10213 38 LPVSLLTPMAQD-------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSL 110 (394)
T ss_pred HHHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHH
Confidence 333455655555 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHH
Q 008624 199 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 278 (559)
Q Consensus 199 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~ 278 (559)
+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.++||.+++.+.+.. +||+.|++.++++++..+
T Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887 999999998877766554
Q ss_pred HHh-ccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCc
Q 008624 279 GMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 357 (559)
Q Consensus 279 ~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (559)
..+ ..||+|+. +++.....++.+++|.
T Consensus 190 ~~~~~~p~~~~~----------------------------------------------------~~~~~~~~~~~l~~~~ 217 (394)
T PRK10213 190 WIIKSLPSLPGE----------------------------------------------------PSHQKQNTFRLLQRPG 217 (394)
T ss_pred HHHHHCCCCCcc----------------------------------------------------cccchhHHHHHhcCHH
Confidence 433 35553310 0000112345666766
Q ss_pred hhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHH
Q 008624 358 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 437 (559)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 437 (559)
++...+...+.....+. ...+..|.+.++.|++. ...+......+++.+++.++.+++.||.+ |+.+..+..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~ 292 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFA---FFTYIRPVYMNLAGFGV-DGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLA 292 (394)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHH
Confidence 66554433333332221 12233466777788876 67888899999999999999999999954 444333333333
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh
Q 008624 438 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF 517 (559)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 517 (559)
+..+++.... ++.+......++.+.++. ...+...+.+.+..| ++++...++.....++|..+|+.+.|.+.|.
T Consensus 293 ~~~~~l~~~~----~~~~~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~ 366 (394)
T PRK10213 293 VSALVLTLWG----SDKIVATGVAIIWGLTFA-LVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN 366 (394)
T ss_pred HHHHHHHHHh----hhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3322222221 233433434444443433 333344456667667 5577778888888899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHH
Q 008624 518 IHFSIKMVSTWFMILLF 534 (559)
Q Consensus 518 ~g~~~~~~~~~~~~~~~ 534 (559)
.|+...+...+++.++.
T Consensus 367 ~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 367 IGLTSPLMLSGTLMLLT 383 (394)
T ss_pred cChhhHHHHHHHHHHHH
Confidence 99877776655544433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=277.35 Aligned_cols=347 Identities=16% Similarity=0.042 Sum_probs=240.7
Q ss_pred ccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhH
Q 008624 120 TSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 199 (559)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l 199 (559)
+++.+|.+.++ +|+|..+.|++.+++.+++.+++++.|+++||+|||++++.+++....+.+....+++++.+
T Consensus 10 ~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 10 FSPVLSLVAED-------IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred HHhhHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 45566666666 99999999999999999999999999999999999998776665555544433344799999
Q ss_pred HHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHH
Q 008624 200 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIG 279 (559)
Q Consensus 200 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~ 279 (559)
+++|+++|++.+. .+.....+.|++|+++|++++++.+.+..+|.++++++++.+.+.. |||+.|++.++++++..++
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHH
Confidence 9999999999986 5566667799999999999999999999999999999999998877 9999999988887766554
Q ss_pred H-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCch
Q 008624 280 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 358 (559)
Q Consensus 280 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (559)
. +++||+|++... . .... + ..++++++++++.+
T Consensus 161 ~~~~lp~~p~~~~~-----------------------------~-~~~~---~-------------~~~~~~~ll~~~~~ 194 (368)
T TIGR00903 161 VLAALPALPFQAAE-----------------------------G-FGFK---D-------------AVKEFGALAGRKDL 194 (368)
T ss_pred HHHHcCCCCCCCCC-----------------------------C-cchH---H-------------HHHHHHHHHcChhH
Confidence 4 568887752100 0 0000 0 00125678888877
Q ss_pred hHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc---hhhhh-hhH
Q 008624 359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR---PLLIG-GVC 434 (559)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~ 434 (559)
+...+..++..... +.+..|.|.++++.+++. ..+.......+.++++ .+++.||..|| +.... ...
T Consensus 195 ~~~~~~~~~~~~~~----~~~~~wlp~~L~~~g~s~--~~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 195 WIIGAILGFGVALF----DNLAIWLEAALRPAGLED--IAGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAAL 265 (368)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCh--HHHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHH
Confidence 76665544444433 457789999998887764 3555555555555544 46777877543 32222 233
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHh
Q 008624 435 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 514 (559)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~ 514 (559)
+.++.+..+.. ....+..+...++.. ++.....+..+++..|.+|++.|+++.|+.+..++++++.+|.+.+.+
T Consensus 266 ~~a~~~~~~~~-----~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~ 339 (368)
T TIGR00903 266 LIAAFFLALAF-----ELNRLALFAFIGIAG-LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLF 339 (368)
T ss_pred HHHHHHHHHHH-----ccccHHHHHHHHHHH-HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHH
Confidence 33333322221 122222222222222 222233344557889999999999999999999999999999999887
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHH
Q 008624 515 KVFIHFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 515 ~~~~g~~~~~~~~~~~~~~~~~~~ 538 (559)
.. |....+...+...++..+..
T Consensus 340 ~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 340 IS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred hc--CHHHHHHHHHHHHHHHHHHH
Confidence 73 55555555555444444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=275.91 Aligned_cols=367 Identities=14% Similarity=0.147 Sum_probs=261.8
Q ss_pred HHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 008624 106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 185 (559)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 185 (559)
.+++.+..+.......+.+|.+.++ +|++..+.|++.+++.+++.++++++|+++||+|||+++..+.++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHD-------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI 80 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHH-------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 3445566677777777788877766 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHH
Q 008624 186 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 265 (559)
Q Consensus 186 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 265 (559)
+.++++++++++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+.+.. +||+.
T Consensus 81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~~ 159 (382)
T PRK10091 81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRYT 159 (382)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999988877 99999
Q ss_pred HHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccc
Q 008624 266 YGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 344 (559)
Q Consensus 266 f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (559)
|++.+++.++..+.. +++||.++ + .+ .. .
T Consensus 160 f~~~~~~~~~~~~~~~~~lp~~~~---------~--------------------~~-~~-----~--------------- 189 (382)
T PRK10091 160 FLLIAVFNIAVLASIYFWVPDIRD---------E--------------------AK-GG-----L--------------- 189 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCc---------c--------------------cc-cC-----H---------------
Confidence 999988877665544 45666321 0 00 00 0
Q ss_pred cccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 423 (559)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 423 (559)
....+.++++..+.......+..... .....|.+.++. ..|.++ ...+.......++.++++++.+++.||+
T Consensus 190 --~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~~r~ 262 (382)
T PRK10091 190 --REQFHFLRSPAPWLIFAATMFGNAGV----FAWFSYIKPYMMFISGFSE-TSMTFIMMLVGLGMVLGNLLSGRLSGRY 262 (382)
T ss_pred --HHHHHHhcChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhHHHheecccc
Confidence 00012344444333332222211111 122334444554 467776 7888999999999999999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHH
Q 008624 424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 503 (559)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 503 (559)
++|+.+..+..+.+++.+++.... +..+......++...+......+.......+..|.+.++.+ ..+...++|
T Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g 336 (382)
T PRK10091 263 SPLRIAAVTDFIIVLALLMLFFFG----GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLG 336 (382)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHH
Confidence 999998888777777665544322 22222233323332222222222222334444454555544 346778999
Q ss_pred HHHHHHhhHHhHHh-hhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008624 504 NAIVTFAFSPLKVF-IHFSIKMVSTWFMILLFDWLVQFCRS 543 (559)
Q Consensus 504 ~~i~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (559)
..++|.+.|.+.|. .++...+...++..++.........+
T Consensus 337 ~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 337 SAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred HHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999996 56767666655555544444433333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=282.09 Aligned_cols=352 Identities=16% Similarity=0.044 Sum_probs=262.3
Q ss_pred cccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhh
Q 008624 119 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV 198 (559)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 198 (559)
..++..|.+.++ +|++..++|++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++++++.
T Consensus 21 ~~~~~~~~~~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (377)
T TIGR00890 21 TWTLLAPPLGRY-------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAA 93 (377)
T ss_pred hhhhHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHH
Confidence 445566666665 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHH
Q 008624 199 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 278 (559)
Q Consensus 199 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~ 278 (559)
++++|++.|++.+...+.....+.+++| ++|+++.++...+.++|.++++.+.+.+.+.. +||+.|++.+++.++..+
T Consensus 94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~ 171 (377)
T TIGR00890 94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-GVPAAFIYMGIIFLLVIV 171 (377)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888999986 67999999999999999988777766666666 999999999988887766
Q ss_pred HHh-ccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCc
Q 008624 279 GMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 357 (559)
Q Consensus 279 ~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (559)
..+ +++++|+... .++ ++ .+.+..+.++.++++.
T Consensus 172 ~~~~~~~~~~~~~~-------------------------~~~--~~------------------~~~~~~~~~~~~~~~~ 206 (377)
T TIGR00890 172 LGAFLIGYPPGQLI-------------------------KTN--IE------------------VSVKDYTVWEMLRTPQ 206 (377)
T ss_pred HHHHheecCchhcc-------------------------ccC--cc------------------cchhhhhHHHHHcCcc
Confidence 554 4444321000 000 00 0000112345667766
Q ss_pred hhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHH
Q 008624 358 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 437 (559)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 437 (559)
++...+...+..+.. .....+.+.+.++.+.+. ...+.......++.++++++.|++.||++||+.+..+..+.+
T Consensus 207 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 281 (377)
T TIGR00890 207 FWVLYLSFFLNAVSG----LLLIGLYKPYGQSLGLSD-GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISA 281 (377)
T ss_pred HHHHHHHHHHHhHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 665544333332222 123344555667777665 678888899999999999999999999999999888887777
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh
Q 008624 438 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF 517 (559)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 517 (559)
++.+++..... ......+...++.+.+.+. ..+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+.
T Consensus 282 ~~~~~~~~~~~---~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 357 (377)
T TIGR00890 282 VGMAAMLFIPM---LNDVLFLATVALVFFTWGG-TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE 357 (377)
T ss_pred HHHHHHHHccc---chhHHHHHHHHHHHHHhcc-chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77665544211 1122222222233333322 2234446788999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHH
Q 008624 518 IHFSIKMVSTWFMILL 533 (559)
Q Consensus 518 ~g~~~~~~~~~~~~~~ 533 (559)
.|+...+...+++.++
T Consensus 358 ~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 358 IGFEYTFIVTGAFALT 373 (377)
T ss_pred hchhhHHHHHHHHHHH
Confidence 9988777766555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=282.86 Aligned_cols=384 Identities=18% Similarity=0.169 Sum_probs=269.5
Q ss_pred hhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh
Q 008624 114 GYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA 193 (559)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 193 (559)
.++...++...|.+.++ +|.+..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 79 (399)
T TIGR00893 7 YLDRANLSFAAPMLQED-------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA 79 (399)
T ss_pred HHHHHhhhHhHHHHHHh-------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH
Confidence 34445555555665555 99999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHH
Q 008624 194 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLA 273 (559)
Q Consensus 194 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~ 273 (559)
++++.++++|+++|++.+...+....++.|++|+++|++++++.+...++|.++++.+++.+.+.. +||+.|++.+++.
T Consensus 80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 158 (399)
T TIGR00893 80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGVLG 158 (399)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988877 8999999988887
Q ss_pred HHHHHHHh-ccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhh
Q 008624 274 LLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEV 352 (559)
Q Consensus 274 ~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (559)
++..+..+ +.+|+|+. .+...++++ ....+..+.+ .+...+.+..+...++.
T Consensus 159 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 211 (399)
T TIGR00893 159 IIWGVLWLKFIPDPPQK---------AKWLTEEEK-YIVVGGLLAE-----------------QQGKGPSTPKKYQIKEL 211 (399)
T ss_pred HHHHHHhhheecCCCCc---------cccCCHHHH-hhcchhhccc-----------------cccccccCCCccchHHH
Confidence 77666554 45554420 000000000 0000000000 00001112233445677
Q ss_pred ccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh
Q 008624 353 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 431 (559)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 431 (559)
++++.++...+..++.... ......+.|.++++ .+.+. .+.+.......++.+++.++.+++.||++||+....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 286 (399)
T TIGR00893 212 LKDRRVWGLALGQFLVNIG----LGFFLTWFPTYLVQERGLSI-LEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLV 286 (399)
T ss_pred hcCHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHhcccH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 7777665555444333332 23466677777755 56655 678888899999999999999999999999862111
Q ss_pred -hhHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHH
Q 008624 432 -GVCGIALSLLLLSAYYKILG-GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 509 (559)
Q Consensus 432 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 509 (559)
......++.+.......... ...........+.. +...+..+....+..|.+|++.|+++.|+.+.+.++|+.++|.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 365 (399)
T TIGR00893 287 FARKTAIIAGLVLSLLMFATNYVNIPYAALALVALG-FFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPI 365 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-HhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhH
Confidence 11111111111111100001 11222222222222 2222355677788999999999999999999999999999999
Q ss_pred hhHHhHHhhh-hhHHHHHHHHHHHHHHHHH
Q 008624 510 AFSPLKVFIH-FSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 510 ~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~ 538 (559)
+.|.+.+..| +...+...+++.++..+..
T Consensus 366 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 366 VIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999988 7777766665555444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=275.78 Aligned_cols=388 Identities=17% Similarity=0.108 Sum_probs=282.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 008624 96 WSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRE 175 (559)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~ 175 (559)
.++.++..+.+.+..+...+....+.+.++.+.++ +|.+..+.++..+.+.+++.+++++.|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~ 80 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVED-------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV 80 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 35556666777777777777788888888877766 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhh
Q 008624 176 LIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255 (559)
Q Consensus 176 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 255 (559)
++.+.++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.+.+++......+|..+||.+++.+
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 81 MLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999888899999999999998
Q ss_pred cCCCcchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHH
Q 008624 256 INAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334 (559)
Q Consensus 256 ~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (559)
.+.. +||+.|++.+++.++..+.. +..||+++.. + ++...
T Consensus 161 ~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~------------------~~~~~-------- 201 (406)
T PRK15402 161 IHVL-PWRGMFVLFAALAALSFFGLWRAMPETAGRV------------G------------------EKLSL-------- 201 (406)
T ss_pred HHcc-CccHHHHHHHHHHHHHHHHHHHhCCCCCccc------------c------------------ccccH--------
Confidence 8876 99999999888877766644 3466643200 0 00000
Q ss_pred HhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHH-HHcCCCCchhHHHHHHHHHHHHHHHH
Q 008624 335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMT 413 (559)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (559)
.+...+++++++++.++...+...+...... ....+.|.++ +..+.++ .+.+.......++.+++.
T Consensus 202 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~~~~~g~ 268 (406)
T PRK15402 202 --------KELGRDYKLVLKNRRFVAGALALGLVSLPLL----AWIALSPVILISGEQLSS-YEYGLLQVPVFGALIAGN 268 (406)
T ss_pred --------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHH
Confidence 0001124566777766655544433332221 2334456665 4467765 667777777778889999
Q ss_pred HHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHH
Q 008624 414 WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 493 (559)
Q Consensus 414 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 493 (559)
++.+++.||+++|+.+..+.++.+++.+++...........++.+...++.+.+.+.... ......... +++++|+..
T Consensus 269 ~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~-~~~~~g~~~ 346 (406)
T PRK15402 269 LTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANA-GLYRLTLFS-SDVSKGTVS 346 (406)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhh-hHHHHHhhh-ccccccHHH
Confidence 999999999999999888877777776666554321112223333333334333333322 222333333 448999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 008624 494 SLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSC 544 (559)
Q Consensus 494 g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (559)
++.+....++..+++.+.+.+.+..+.........++.++...+...+.++
T Consensus 347 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK15402 347 AAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLKD 397 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998887665555554444444444333333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=278.92 Aligned_cols=390 Identities=14% Similarity=0.058 Sum_probs=254.1
Q ss_pred HHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 008624 106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 185 (559)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 185 (559)
.++.......+...++...|.+. + .|++..+.+++.+.+.++++++++++|+++||+|||++++.+.++.++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~p~l~-~-------~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 34 IFFGYAAYYLVRKNFALAMPYLV-E-------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH-H-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence 33344444444444444455443 2 378999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc----chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHH-HHHHHHhhhhcCCCc
Q 008624 186 GALTTAYAP----GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGI-LLGYFVGSFQINAVG 260 (559)
Q Consensus 186 ~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~ 260 (559)
+.+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|. +.+++++..+....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~- 184 (452)
T PRK11273 106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN- 184 (452)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 999888763 788899999999999998888888889999999999999999999999986 45665544433334
Q ss_pred chHHHHHhhhHHHHHHHH-HHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhc
Q 008624 261 GWRYMYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSS 339 (559)
Q Consensus 261 ~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (559)
+||+.|++.+++.++..+ ..++++|+|+.... ++. ++... +..... ....
T Consensus 185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~-~~~~~---~~~~~~----------------~~~~ 235 (452)
T PRK11273 185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGL---------PPI-EEYKN---DYPDDY----------------NEKH 235 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC---------CCh-hhhhh---cccccc----------------cccc
Confidence 999999998887776544 44667887642100 000 00000 000000 0000
Q ss_pred ccccccccc-hhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008624 340 YTDEKSEGS-FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAV 417 (559)
Q Consensus 340 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g 417 (559)
.++...+.. ...++|++.++...+...+..... +....|.|.++++ .+++. ..++....+..++.+++.++.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~P~~l~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~G 310 (452)
T PRK11273 236 EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCG 310 (452)
T ss_pred CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011 123566666666555444444333 2366788999876 56765 6777888888899999999999
Q ss_pred HHhhhc--CCchhhh-hhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHH
Q 008624 418 AKVDDL--GRRPLLI-GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 494 (559)
Q Consensus 418 ~l~d~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 494 (559)
+++||+ +||.... ....+..++.+++.... ....+......++++... .........+..|.+|++.+|++.|
T Consensus 311 ~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g 386 (452)
T PRK11273 311 WMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP---AGNPTVDMACMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAG 386 (452)
T ss_pred HHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc---ccChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcChhhhhhHHH
Confidence 999999 4444322 22222222222221110 112222222222222211 1111122245678999999999999
Q ss_pred HHHHHHHHHHHH-HHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008624 495 LAVLTNFGSNAI-VTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCR 542 (559)
Q Consensus 495 ~~~~~~~~g~~i-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (559)
+.+...++|+.+ +|.+.|.+.|..|+...+...+.++++..+....+.
T Consensus 387 ~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 387 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 999998898765 799999999999988888776666665555544433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=279.08 Aligned_cols=359 Identities=20% Similarity=0.244 Sum_probs=242.1
Q ss_pred HHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHH-HHHHH-----HHHHHHHHHHHHHHhhhchhHH
Q 008624 102 PFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLV-VSGSL-----YGALLGSILVYSIADFLGRKRE 175 (559)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~~-----l~~~i~~~~~G~l~dr~Grr~~ 175 (559)
....++++.++..+|...++...|.+.++ ++.++.+.+.+ .+... ++..+++++.|+++||+|||++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~ 88 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKT-------FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG 88 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence 36667778899999999999999988877 88877766543 33322 2234789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhh--------HHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHH
Q 008624 176 LIIAAVLYALGALTTAYAPGLGV--------LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 247 (559)
Q Consensus 176 ~~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 247 (559)
++.+.+++++++++++++++++. ++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+
T Consensus 89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 6899999999999999999999999999999999999999988888888
Q ss_pred HHHHhhhhc--------CCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCC
Q 008624 248 GYFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP 319 (559)
Q Consensus 248 g~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (559)
++.+++.+. +.. |||++|++..+...+........||++++...+ .
T Consensus 169 g~~~g~~l~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-----------------------~-- 222 (434)
T PRK15075 169 AALLGYLLNQWLSPAQMAEW-GWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-----------------------H-- 222 (434)
T ss_pred HHHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-----------------------h--
Confidence 888777653 344 999999875544322222222233332110000 0
Q ss_pred CCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhH
Q 008624 320 PGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADA 398 (559)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 398 (559)
+.+.+..+++..+++ +..+...+..+.....+.....|.|.++++ .|.+. .+.
T Consensus 223 ----------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~-~~~ 276 (434)
T PRK15075 223 ----------------------RPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSA-ADS 276 (434)
T ss_pred ----------------------ccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHH
Confidence 000000111122222 111111122222233344577788998876 67776 667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccce
Q 008624 399 TRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL 478 (559)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (559)
++...+..++.+++.++.|+++||++||+.+..+..+..+.......... .............+...+.+ ...+....
T Consensus 277 ~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g-~~~~~~~~ 354 (434)
T PRK15075 277 LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV-AAPSFARMLAVELWLSFLYG-SYNGAMVV 354 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHH-HHHhhHHH
Confidence 78888888999999999999999999999877655443322211111111 11111111121222222222 23333446
Q ss_pred eecccCCcchhhhHHHHHHHHHH-HHHHHHHHhhHHhHHhhhhh
Q 008624 479 MVSEIFPLRTRGRGISLAVLTNF-GSNAIVTFAFSPLKVFIHFS 521 (559)
Q Consensus 479 ~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~~~g~~~~~~g~~ 521 (559)
+..|.+|++.|+++.|+.+.+.. +++.++|.+.|.+.|..|+.
T Consensus 355 ~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 355 ALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 78899999999999999766555 45888999999999998853
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=274.04 Aligned_cols=375 Identities=14% Similarity=0.101 Sum_probs=269.1
Q ss_pred HHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 008624 105 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 184 (559)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~ 184 (559)
..+++.++.+.+...++..+|.+.++ +|+|.++.+++.+.+.+++.++++++|++.||+|||++++.+.++.+
T Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 11 ISFLSYALTGALVIVTGMVMGPIAEY-------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455677777777778888887766 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHH
Q 008624 185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 264 (559)
Q Consensus 185 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 264 (559)
++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+.....+||+
T Consensus 84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~ 163 (394)
T PRK03699 84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW 163 (394)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877654349999
Q ss_pred HHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccc
Q 008624 265 MYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 344 (559)
Q Consensus 265 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (559)
.|++.+++.++..++.++. +.|+. ++ +.+++ +++.
T Consensus 164 ~f~~~~~~~~~~~~~~~~~-~~p~~-------------~~-------------~~~~~------------------~~~~ 198 (394)
T PRK03699 164 VYACIGLVYVAIFILTLFS-EFPAL-------------GK-------------HAPKA------------------DKPV 198 (394)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCccc-------------cc-------------cCccc------------------cCcc
Confidence 9999888777665544432 21210 00 00000 0000
Q ss_pred cccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 423 (559)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 423 (559)
.++. .++.++...+..++ .......+..|.|.++++ .+.+. .+.+.......++.++++++.+++.||+
T Consensus 199 ----~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 268 (394)
T PRK03699 199 ----AKEK-WGIGVLFLAIAALL----YILAQLTFISWVPEYAQKKFGMSL-EDAGNLVSNFWMAYMVGMWIFSFIVRFF 268 (394)
T ss_pred ----cccc-CChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCh-HHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 11222222222222 222233466788998854 67776 7788888899999999999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHH
Q 008624 424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 503 (559)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 503 (559)
++|+.+.....+..+...++... .+.+......++.+.+.+ ...+...+...+..| +.++...+......++|
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g 341 (394)
T PRK03699 269 DLQRILTVLAGLALVLMYLFVNT-----DDPSHLLYAILGLGFFSS-AIYTTIITLGSQQTK-VASPKLVNFILTCGTIG 341 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHH
Confidence 99988877666555544443321 222222233333333222 233344355566655 45677888899899999
Q ss_pred HHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008624 504 NAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQR 548 (559)
Q Consensus 504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (559)
..++|.+.|.+.+..|+...++...++.+++.++.+...+..|+|
T Consensus 342 ~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK03699 342 TMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGFVSKHR 386 (394)
T ss_pred HHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887776666665555444444433333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=276.06 Aligned_cols=358 Identities=21% Similarity=0.159 Sum_probs=254.8
Q ss_pred HHhhhhhhhcccccccccc-CCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 008624 109 GGLLFGYDIGATSGATISL-QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 187 (559)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 187 (559)
..+..........+.++.. .++ +|.|..++|++.+++.+++.+++++.|+++||+|||++++.+.++++++.
T Consensus 23 ~~~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (399)
T PRK05122 23 FTFISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSG 95 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHH
Confidence 3344555556666666653 333 89999999999999999999999999999999999999999999988887
Q ss_pred HHHHhh---c-----chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC
Q 008624 188 LTTAYA---P-----GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 259 (559)
Q Consensus 188 ~~~~~~---~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 259 (559)
+.+.++ + +++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+.+++.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 175 (399)
T PRK05122 96 LLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG 175 (399)
T ss_pred HHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 766543 2 56789999999999999999999999999999999999999999999999999999999988877
Q ss_pred cchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhc
Q 008624 260 GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSS 339 (559)
Q Consensus 260 ~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (559)
+||+.+++.++..++..+.....|++++ . +
T Consensus 176 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~---~----------------- 205 (399)
T PRK05122 176 -GLAGLGLLIMLLALLGLLLARPRPAVPP-----------------------------V---K----------------- 205 (399)
T ss_pred -cHHHHHHHHHHHHHHHHHHHhcCCCCCC-----------------------------C---C-----------------
Confidence 9999988777665544433332332110 0 0
Q ss_pred ccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008624 340 YTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAK 419 (559)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 419 (559)
+++.++++.+++ .+.......+..+. +.....+.+.++.+.+.+ ..+.......++.+++.++.+++
T Consensus 206 ----~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l 272 (399)
T PRK05122 206 ----GERLPFRRVLGR--VWPYGMGLALASIG----FGTIATFITLYYAARGWD---GAALALTLFGVAFVGARLLFGNL 272 (399)
T ss_pred ----ccchhHHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccc---cchHHHHHHHHHHHHHHHHHHHH
Confidence 000011111111 11111111111111 122445666666666553 34556677788889999999999
Q ss_pred hhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHH
Q 008624 420 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 499 (559)
Q Consensus 420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 499 (559)
.||+++|+.+..+..+.+++.+++... ++.+..+...++.+.+.+... +.......|..|++.|+++.|+.+..
T Consensus 273 ~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~ 346 (399)
T PRK05122 273 INRLGGLRVAIVSLLVEILGLLLLWLA-----PSPWMALIGAALTGFGFSLVF-PALGVEAVKRVPPQNRGAALGAYSVF 346 (399)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999998888777777776655442 233333333334444443332 33335566788999999999999999
Q ss_pred HHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008624 500 NFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCR 542 (559)
Q Consensus 500 ~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (559)
..+|..+++.+.|.+.+..|+...+...+++.++..++...+.
T Consensus 347 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 347 LDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988888777666665555544443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=264.39 Aligned_cols=357 Identities=15% Similarity=0.104 Sum_probs=248.8
Q ss_pred hccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh---
Q 008624 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--- 193 (559)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--- 193 (559)
-...++..+.+.+++ +|+|.+|.+++.+++.++++++.++.|++.||+|.|+++.++.+++++.+++.+++
T Consensus 50 w~~~~~l~~~~~~~~------~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~ 123 (462)
T PRK15034 50 WMLFSAVTVNLNKIG------FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN 123 (462)
T ss_pred HHHHHHHHHHhhhhh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334455555554422 99999999999999999999999999999999999999999999999999999987
Q ss_pred --cchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhc-----CC--------
Q 008624 194 --PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-----NA-------- 258 (559)
Q Consensus 194 --~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-----~~-------- 258 (559)
++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..++++++..+. ..
T Consensus 124 ~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~ 202 (462)
T PRK15034 124 PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQ 202 (462)
T ss_pred cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 8999999999999998 6688999999999999999999999997777777766665554322 11
Q ss_pred ----CcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHH
Q 008624 259 ----VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334 (559)
Q Consensus 259 ----~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (559)
..+||..+++.+++.++..++.+++.++++
T Consensus 203 ~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~---------------------------------------------- 236 (462)
T PRK15034 203 ADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA---------------------------------------------- 236 (462)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------------------------------------------
Confidence 115888888888887777666654433211
Q ss_pred HhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHH
Q 008624 335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTW 414 (559)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (559)
+.+....+.++.+|+|..|...+.+++ .++.+..+.++.|.++++. ++. ........+..+...+.++
T Consensus 237 ------~~~~~~~~~~~vlk~~~~Wllslly~~----tFG~fvg~s~~lp~~~~~~-~~~-~~~l~~~~l~~l~~~l~rp 304 (462)
T PRK15034 237 ------SSRASIADQLPVLQRLHLWLLSLLYLA----TFGSFIGFSAGFAMLAKTQ-FPD-VNILRLAFFGPFIGAIARS 304 (462)
T ss_pred ------ccccCHHHHHHHhCCCchhHHHHHHHH----HHHHHHHHHHHHHHHHHHH-cCh-HHHHHHHHHHHHHHHHHHH
Confidence 001112235678888888777655444 3334445777888887663 332 2333334455677888899
Q ss_pred HHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHhhcccccccceeecccCCc-------
Q 008624 415 IAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG-GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL------- 486 (559)
Q Consensus 415 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------- 486 (559)
++|+++||+|+++++.++++.+.++...+........ .+.+.....++....+.+.+.. ..+-++.+.+|+
T Consensus 305 lgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~ 383 (462)
T PRK15034 305 VGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVK 383 (462)
T ss_pred hhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhccc
Confidence 9999999999999999888877776644433322111 1122222222222233333332 334556666663
Q ss_pred --------------chhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhH-HHHHHHHHHHHHHHHHH
Q 008624 487 --------------RTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSI-KMVSTWFMILLFDWLVQ 539 (559)
Q Consensus 487 --------------~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 539 (559)
++.|.+.|+..+.+.+|+++.|.++|...+..|.+. .+..+.+..+++..+.+
T Consensus 384 ~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 384 MKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred ccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 267889999999999999999999999998887544 34344444443333333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=333.39 Aligned_cols=431 Identities=30% Similarity=0.475 Sum_probs=322.5
Q ss_pred HHHHHhhhhhhhccccccccccC--CCCCCCCcc--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 008624 106 PALGGLLFGYDIGATSGATISLQ--SPELSGTTW--FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV 181 (559)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~ 181 (559)
+.++.+..+|+...++...+... ......++. .+.+..+.+++.+...+|..+|++++|.++||+|||+.++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 34556888888877766554443 111001000 11144678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc---chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCC
Q 008624 182 LYALGALTTAYAP---GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA 258 (559)
Q Consensus 182 ~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 258 (559)
+..+++++.++++ +++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999999887665332
Q ss_pred C--cchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHh
Q 008624 259 V--GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSL 336 (559)
Q Consensus 259 ~--~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (559)
. .+||+.+++.++++++..+..+++||||+|+..| ++.+++++.++++++.+..+++..+..++ .
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~---------~~~~~A~~~l~~~~~~~~~~~~~~~~~~~----~ 231 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSK---------GRDEEAEKVLRKLRGKEIEDEEIEEIKAE----K 231 (451)
T ss_pred cccccccccccccccccccccccccccccccceeccc---------ccccccccccccccccccccccccccccc----c
Confidence 2 1599999999999988888888999999999875 66678888887765553222221111111 0
Q ss_pred hhcccccccccchhhhccCCc-hhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHH
Q 008624 337 KSSYTDEKSEGSFLEVFQGPN-LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWI 415 (559)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (559)
++..+.+..++++++++. .++..+...+..+..+.+.....+|.+.++++.+.+.. -.......+..+++.++
T Consensus 232 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~ 305 (451)
T PF00083_consen 232 ---KESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLL 305 (451)
T ss_pred ---ccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccc
Confidence 011111256778888765 44555555566666667777788888888888887762 33344555667777788
Q ss_pred HHHHhhhcCCchhhhhhhHHHHHHHHHHH-HHHhhcCc---hhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhh
Q 008624 416 AVAKVDDLGRRPLLIGGVCGIALSLLLLS-AYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 491 (559)
Q Consensus 416 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 491 (559)
+.++.||+|||++++.+..+++++.+.++ ........ .....+.+.++...++..+..+..+.+..|.+|++.|++
T Consensus 306 ~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~ 385 (451)
T PF00083_consen 306 AIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRST 385 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccc
Confidence 88999999999999998888888777775 11111111 133334444445556666777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccccCCchhhh
Q 008624 492 GISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQRTFSSSLL 555 (559)
Q Consensus 492 ~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (559)
+.|+....+++++++++.+...+.+..+....+.+.+.+.++..++.+++.+|+++|+.+|..+
T Consensus 386 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 386 GIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE 449 (451)
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence 9999999999999999999999988888555555555555666667777889999998877543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=280.75 Aligned_cols=405 Identities=17% Similarity=0.215 Sum_probs=272.4
Q ss_pred HHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 008624 102 PFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV 181 (559)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~ 181 (559)
.+..++++.+..+++.....+.++.+.++ +|++..+.+++.+.+.+++.++.++.|+++||+|||++++.+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGE-------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 34455566677788888888888877766 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcc
Q 008624 182 LYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG 261 (559)
Q Consensus 182 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~ 261 (559)
+.+++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+.. +
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~ 172 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-G 172 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988877 9
Q ss_pred hHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHH-HHhhhcc
Q 008624 262 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL-VSLKSSY 340 (559)
Q Consensus 262 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 340 (559)
||+.|++.++..++.++....+||++++...+..+. . ..+..+.....+. . .......... .......
T Consensus 173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 241 (496)
T PRK03893 173 WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKA--P-------VRTMVDILYRGEH-R-IINILLTLAAAAALWFCF 241 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccc--c-------chhHHHHHhcchh-H-HHHHHHHHHHHHHHHHHH
Confidence 999998865555544444456777665422110000 0 0000000000000 0 0000000000 0000000
Q ss_pred cccccccchh-------------h--hccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHH-HcCCCCchhHHHHHHH
Q 008624 341 TDEKSEGSFL-------------E--VFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVV 404 (559)
Q Consensus 341 ~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 404 (559)
.. .....+. . ....+..++.........+..+........+.|.+++ +.|.+. .+.+.+...
T Consensus 242 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~-~~~g~~~~~ 319 (496)
T PRK03893 242 AG-NLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDP-HTVANVLFF 319 (496)
T ss_pred Hh-hhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCH-HHHHHHHHH
Confidence 00 0000000 0 0000011111111111122222222234567888885 677776 788999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccC
Q 008624 405 IGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF 484 (559)
Q Consensus 405 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (559)
..++.+++.++.|++.||+++|+.+..+..+..+..+.+.... ...........+..++.+.+..+....++.|.+
T Consensus 320 ~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (496)
T PRK03893 320 SGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG----GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF 395 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC
Confidence 9999999999999999999999988777655555443332211 122222222222222222233344456778999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHH
Q 008624 485 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMI 531 (559)
Q Consensus 485 p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~ 531 (559)
|++.|++++|+.+....+|+.++|.+.|.+.+..|+...+...+.++
T Consensus 396 ~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 396 DTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred CHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877665544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=276.35 Aligned_cols=399 Identities=14% Similarity=0.074 Sum_probs=268.1
Q ss_pred HHHHHHHHHhhhhhhhccccccccccCCCCCCC---------------CccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008624 102 PFLFPALGGLLFGYDIGATSGATISLQSPELSG---------------TTWFNLSAVQLGLVVSGSLYGALLGSILVYSI 166 (559)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l 166 (559)
+..+++++......+...++...+.+.++.... +.+++++..+.|++.+++.+++.+++++.|++
T Consensus 20 i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l 99 (465)
T TIGR00894 20 LSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYL 99 (465)
T ss_pred HHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchHHH
Confidence 344445555566777777777776665421111 01289999999999999999999999999999
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHHhh--cchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHH
Q 008624 167 ADFLGRKRELIIAAVLYALGALTTAYA--PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 244 (559)
Q Consensus 167 ~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 244 (559)
+||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|
T Consensus 100 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 179 (465)
T TIGR00894 100 AGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLG 179 (465)
T ss_pred HHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887554 668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc-cCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCc
Q 008624 245 ILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDK 323 (559)
Q Consensus 245 ~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (559)
.++++++++.+.+...+||+.|++.++++++..++.++ .+|+|+.. .. .++ ++.+.
T Consensus 180 ~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--------~~-~~~-~~~~~------------- 236 (465)
T TIGR00894 180 TFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--------PC-ISK-FEKKY------------- 236 (465)
T ss_pred HHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--------CC-CCH-HHHHH-------------
Confidence 99999999998876238999999999988877666644 55555310 00 000 00000
Q ss_pred ccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHH
Q 008624 324 LSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVS 402 (559)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 402 (559)
..+..+.+..+.+.+.+++++++++.++...+..+.... ....+..|+|.++++ .+.+. ...++..
T Consensus 237 --------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~l~~~~g~s~-~~~g~~~ 303 (465)
T TIGR00894 237 --------INSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFW----LYTILPTYLPTFISWVLRVSG-KENGLLS 303 (465)
T ss_pred --------HHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCcCh-HHhHHHH
Confidence 000000000011123357788888766665544433333 334577788988865 57766 7888998
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhhh---hhhHHHHHHH---HHHHHHHhhcCchhHHHHHHHHHHHHHhhccccccc
Q 008624 403 VVIGVFKLVMTWIAVAKVDDLGRRPLLI---GGVCGIALSL---LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 476 (559)
Q Consensus 403 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (559)
....++.+++.++.|+++||+++|+... ...+...++. ..............+..+..+++..++.+ ...+..
T Consensus 304 ~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 382 (465)
T TIGR00894 304 SLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSS-GPLAGV 382 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhh
Confidence 8999999999999999999976543211 0001111111 11111111101222222323333332222 222233
Q ss_pred ceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhh---hhhHHHHHHHHHHHHHHHHH
Q 008624 477 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFI---HFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 477 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~ 538 (559)
.....|..| +.+|.+.|+.++.+.++++++|.+.|.+.+.. +|...+.+.++..++..++.
T Consensus 383 ~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 383 LINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred hhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 345567766 58999999999999999999999999987653 35555555555555444433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=268.43 Aligned_cols=351 Identities=16% Similarity=0.107 Sum_probs=247.7
Q ss_pred hhhhcccccccccc-CCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH-
Q 008624 114 GYDIGATSGATISL-QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA- 191 (559)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~- 191 (559)
....+...+.+|.. .++ +|+|..++|++.+++.+++.++++++|+++||+|||++++.+.++..++.+...
T Consensus 28 ~~~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 100 (392)
T PRK12382 28 YMTVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLL 100 (392)
T ss_pred HHHHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 33445555666643 334 899999999999999999999999999999999999999999888777655332
Q ss_pred --h-----hcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHH
Q 008624 192 --Y-----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 264 (559)
Q Consensus 192 --~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 264 (559)
+ .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+||++++.+.+.. +||+
T Consensus 101 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~ 179 (392)
T PRK12382 101 AAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-GFAA 179 (392)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-ChHH
Confidence 2 3578999999999999999999999999999999999999999999999999999999999988877 9998
Q ss_pred HHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccc
Q 008624 265 MYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 344 (559)
Q Consensus 265 ~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (559)
.+.+..+..++..+.....||.+. ++ +
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~--~---------------------- 206 (392)
T PRK12382 180 LALTTMVLPLLAWAFNGTVRKVPA-----------------------------HA--G---------------------- 206 (392)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCC-----------------------------Cc--c----------------------
Confidence 877665544433322222222110 00 0
Q ss_pred cccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008624 345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 424 (559)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 424 (559)
.+.+.++.++. ++...+...+... .......+.+.++++.+.+ ..+.......++.+++.++.|++.||++
T Consensus 207 ~~~~~~~~~~~--~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~g 277 (392)
T PRK12382 207 ERPSLWSVVGL--IWKPGLGLALQGV----GFAVIGTFVSLYFASKGWA---MAGFTLTAFGGAFVLMRVLFGWMPDRFG 277 (392)
T ss_pred cCchHHHHHHH--HHHhHHHHHHHHH----HHhHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00001111110 1111111111111 1122445666777776654 3455666777888899999999999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHH
Q 008624 425 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 504 (559)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 504 (559)
+|+.+..+..+.+++.+++... .+.+..+....+.+.+.+. ..+.......|.+|+++|+++.|+.++...+|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 351 (392)
T PRK12382 278 GVKVAIVSLLVETVGLLLLWLA-----PTAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY 351 (392)
T ss_pred CCeehHHHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999888877777776655432 2233333333333333332 233444566788899999999999999999999
Q ss_pred HHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 008624 505 AIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQF 540 (559)
Q Consensus 505 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 540 (559)
.++|.+.|.+.+..|+...+...+++.++..++...
T Consensus 352 ~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 352 GVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988888877766655555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=264.65 Aligned_cols=354 Identities=15% Similarity=0.114 Sum_probs=259.4
Q ss_pred HHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 008624 105 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 184 (559)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~ 184 (559)
.+.++.++.+.......+.+|.+.++ +|.|..++|++.+.+.+++.++++++|+++||+|||+++..+.++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~lp~~~~~-------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~ 82 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLNTLVPLWLAQ-------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677778888888888888876 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHH
Q 008624 185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 264 (559)
Q Consensus 185 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 264 (559)
++.++++++++++.++++|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.+++.+.+.. .|..
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~ 161 (381)
T PRK03633 83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL-MSVL 161 (381)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cchH
Confidence 999999999999999999999999999998988888889999999999999999999999999999999887653 3333
Q ss_pred HHHhhhHHHHHHHHHHh-ccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccccc
Q 008624 265 MYGLSAPLALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 343 (559)
Q Consensus 265 ~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (559)
.+. .+........+.+ ..++++. ++
T Consensus 162 ~~~-~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------~~ 187 (381)
T PRK03633 162 PWV-TGLVLAAILPLLFTRILNQQA-----------------------------------------------------EN 187 (381)
T ss_pred HHH-HHHHHHHHHHHHHhcccCCCC-----------------------------------------------------CC
Confidence 332 2222221111111 1111000 00
Q ss_pred ccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 344 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 423 (559)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 423 (559)
++..+.++.++++.++.......+..... .....+.|.++++.+.+. ...+.......++.+++++..+++.||+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lp~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 262 (381)
T PRK03633 188 HDSTSIWPMLKLRQARLGVNGCIISGIVL----GSLYGLMPLYLNHQGMSD-ASIGFWMALLVSAGILGQWPIGRLADRF 262 (381)
T ss_pred CCCCCHHHHHHhcchHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHc
Confidence 01123445666666554332222222211 224456788888888776 6778888888899999999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHH
Q 008624 424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 503 (559)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 503 (559)
++|+.+..+..+..++.+.+.. . ... .....+.+.+ .....|.......|..|+++++...+..+...++|
T Consensus 263 ~~~~~l~~~~~~~~~~~~~~~~------~-~~~-~~~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG 333 (381)
T PRK03633 263 GRLLVLRVQVFVVILGSIAMLS------Q-AAM-APALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVG 333 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHhh------h-HHH-HHHHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 9999888777776665544321 1 111 1122222222 22334555577778888888888888888889999
Q ss_pred HHHHHHhhHHhHHhhhhhHHHHHHHHHHHHH
Q 008624 504 NAIVTFAFSPLKVFIHFSIKMVSTWFMILLF 534 (559)
Q Consensus 504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 534 (559)
..++|.+.|.+.|+.|+.+.+...+.+.++.
T Consensus 334 ~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 334 SLLGPSFTAMLMQNYSDNLLFIMIASVSFIY 364 (381)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 9999999999999999888777666555433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=271.81 Aligned_cols=366 Identities=13% Similarity=0.101 Sum_probs=238.7
Q ss_pred hhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc
Q 008624 115 YDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP 194 (559)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 194 (559)
+......+..+.+.++ +|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++
T Consensus 50 ~~~~~~~~~~~~l~~~-------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~ 122 (476)
T PLN00028 50 VSTFAAAPLLPIIRDN-------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS 122 (476)
T ss_pred HHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc
Confidence 3334455666666655 999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhc----CC----CcchHHHH
Q 008624 195 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI----NA----VGGWRYMY 266 (559)
Q Consensus 195 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~----~~----~~~wr~~f 266 (559)
+++.++++|+++|++.+... ....++.|++|+++|++++++.....++|..+++.+.+.+. +. ..+||+.|
T Consensus 123 s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f 201 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAF 201 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 99999999999999988654 45678999999999999999998777777777766554432 11 12899999
Q ss_pred HhhhHHHHHHHHHHhccCC-chHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccccccc
Q 008624 267 GLSAPLALLMGIGMWSLPP-SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKS 345 (559)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (559)
++.++++++..++.+++++ .|+ +..++.. ++. ..++.+.
T Consensus 202 ~i~g~l~l~~~l~~~~~~~~~p~--------------~~~~~~~-------~~~-------------------~~~~~~~ 241 (476)
T PLN00028 202 FVPGLLHIIMGILVLTLGQDLPD--------------GNYRELK-------KSG-------------------TMPKDSF 241 (476)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCC--------------CchhhHH-------hcC-------------------ccccccH
Confidence 9999888877666655443 221 0000000 000 0000001
Q ss_pred ccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008624 346 EGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 424 (559)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 424 (559)
...+++.++++..+...+..++..... ..+..+.|.++.+ .|.+. ..++.+.....++.+++++++|+++||++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~ig~~~~G~lsDr~~ 316 (476)
T PLN00028 242 SKVLRYGVTNYRTWILALTYGYSFGVE----LTMDNIIAEYFYDRFGLSL-ETAGAIAASFGLMNLFARPAGGYLSDVAA 316 (476)
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHH----HHHHhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 122455566666655444333222222 2345567777654 57776 77889999999999999999999999998
Q ss_pred Cch-------hhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHH
Q 008624 425 RRP-------LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 497 (559)
Q Consensus 425 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 497 (559)
||+ ...+...+.++.++++.. ..+.+..+..++++..+...+. +..+.+..+..| +.+|++.|+.+
T Consensus 317 ~r~~~~~r~~~~~~~~~l~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~ 389 (476)
T PLN00028 317 RRFGMRGRLWALWIVQTLGGVFCIWLGR-----ANSLGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTG 389 (476)
T ss_pred HhcCcchhHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhh
Confidence 652 111222222222221111 1222222222233333222222 233455666654 78999999998
Q ss_pred HHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 008624 498 LTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFC 541 (559)
Q Consensus 498 ~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (559)
..+.+|+++++.+.+ ..+..+|...+.+.+++.+++.++.++.
T Consensus 390 ~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 390 AGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred ccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 877777777776654 1123346666766666655555554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=269.69 Aligned_cols=377 Identities=23% Similarity=0.270 Sum_probs=262.3
Q ss_pred HHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 008624 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 182 (559)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 182 (559)
+....+..+..+++........|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 19 IILSFLIMLMDGYDLAAMGFAAPAISAE-------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 3334444566666666666677777666 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcch
Q 008624 183 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW 262 (559)
Q Consensus 183 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 262 (559)
.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.. +|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~ 170 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GW 170 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887 99
Q ss_pred HHHHHhhhHHHHHHHH-HHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccc
Q 008624 263 RYMYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT 341 (559)
Q Consensus 263 r~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (559)
|+.|++.+++.++..+ ..+++||++++...+ +.++..+..++.......+.... ..+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 231 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK----------RPETVRRIVNAIAPQMQAEAQSA---------LPEQKA 231 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCCChHHHhc----------CHHHHHHHHHHHHHhcccccccc---------cccccc
Confidence 9999998766555444 446788887654332 01111111111111100000000 000000
Q ss_pred ccccccc-hhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008624 342 DEKSEGS-FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKV 420 (559)
Q Consensus 342 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 420 (559)
..+.... .+.+++++..+..... .+..+...........+.|.+.++.+.+. ...+.......++.+++.++.+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (398)
T TIGR00895 232 TQGTKRSVFKALFQGKTARITVLL-WLLYFMLLVGVYFLTNWLPKLMVELGFSL-SLAATGGALFNFGGVIGSIIFGWLA 309 (398)
T ss_pred ccchhhHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111 2223333322222221 12222233333446667787778888876 6788889999999999999999999
Q ss_pred hhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHH
Q 008624 421 DDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN 500 (559)
Q Consensus 421 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 500 (559)
||+++|+.. ....+..+...++.... .+.+..+...++.+.+.+. ..+...++..|.+|++.|+++.|+.+.+.
T Consensus 310 ~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 383 (398)
T TIGR00895 310 DRLGPRVTA-LLLLLGAVFAVLVGSTL----FSPTLLLLLGAIAGFFVNG-GQSGLYALMALFYPTAIRATGVGWAIGIG 383 (398)
T ss_pred hhcchHHHH-HHHHHHHHHHHHHHHHh----hCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 999998443 33333333333332211 2233333333444433333 33455688999999999999999999999
Q ss_pred HHHHHHHHHhhHHh
Q 008624 501 FGSNAIVTFAFSPL 514 (559)
Q Consensus 501 ~~g~~i~~~~~g~~ 514 (559)
.+|..++|.+.|.+
T Consensus 384 ~~g~~~g~~~~G~l 397 (398)
T TIGR00895 384 RLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHhHHhc
Confidence 99999999998875
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=274.95 Aligned_cols=373 Identities=17% Similarity=0.133 Sum_probs=272.9
Q ss_pred ccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-----
Q 008624 118 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----- 192 (559)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~----- 192 (559)
......+|....+ ++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.++
T Consensus 34 ~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T PRK10489 34 GLLGVAVPVQIQM-------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP 106 (417)
T ss_pred HHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC
Confidence 3444445555544 7789999999999999999999999999999999999999988888877665542
Q ss_pred hcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHH
Q 008624 193 APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 272 (559)
Q Consensus 193 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~ 272 (559)
.++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+.. +|++.|++.++.
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~~~~~~ 185 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYGLAAAG 185 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence 5678999999999999999888999999999999999999999999999999999999999988876 899999988887
Q ss_pred HHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhh
Q 008624 273 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEV 352 (559)
Q Consensus 273 ~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (559)
.++..++.+.+|++++.. .. ++.. . ++....++..
T Consensus 186 ~~~~~~~~~~l~~~~~~~---------------------------~~--~~~~---~-------------~~~~~~~~~~ 220 (417)
T PRK10489 186 TFITLLPLLRLPALPPPP---------------------------QP--REHP---L-------------RSLLAGFRFL 220 (417)
T ss_pred HHHHHHHHHhCCCCCCCC---------------------------cc--cccc---h-------------HHHHHHHHHH
Confidence 777666666677643200 00 0000 0 0001123345
Q ss_pred ccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh
Q 008624 353 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 431 (559)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 431 (559)
++++.++...+...+... ......+.|.+.++ .+.+. ...+++.....++.+++.++.+++.||.++++.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~ 294 (417)
T PRK10489 221 LASPVVGGIALLGGLLTM-----ASAVRVLYPALADEVWQMGA-AQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLL 294 (417)
T ss_pred HcChHHHHHHHHHHHHHH-----HHhHHHhhHHHHHhccCCCh-hHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHH
Confidence 566655444433222211 12345567888877 67765 778889899999999999999999999777777777
Q ss_pred hhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhh
Q 008624 432 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 511 (559)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 511 (559)
+..+.+++.+++... .+.+......++++.+. ....+...++..|..|++.||+++|+.+...++|..+++.+.
T Consensus 295 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 295 STLGSFLAVGLFGLM-----PMWILAVLCLALFGYLS-AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 776666665554431 22222223333333222 223344457788999999999999999999999999999999
Q ss_pred HHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccccCCchhhh
Q 008624 512 SPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQRTFSSSLL 555 (559)
Q Consensus 512 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (559)
|.+.+..|+...+...+++.++..++.....++.|+++.+|.-+
T Consensus 369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 369 GGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 99999999888887777766666666655556666666665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=269.07 Aligned_cols=392 Identities=19% Similarity=0.185 Sum_probs=274.4
Q ss_pred HHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 008624 106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 185 (559)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i 185 (559)
++++.++..++...+++.+|.+.++ +|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTALPSMAQS-------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3445566677777777778877766 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHH
Q 008624 186 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 265 (559)
Q Consensus 186 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 265 (559)
+.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+.. +||+.
T Consensus 88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~ 166 (471)
T PRK10504 88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWI 166 (471)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887 99999
Q ss_pred HHhhhHHHHHHHHHHh-ccCCchHHHHHHhhcCCCchhhHHHHHHHHHH---hhccCCCCCcccHHHHHHH-------H-
Q 008624 266 YGLSAPLALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALG---KLRRRPPGDKLSERQIEDT-------L- 333 (559)
Q Consensus 266 f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~- 333 (559)
|++..+...+..+... ..|+.+. ...+.+..+.......... ...+...... ........ .
T Consensus 167 f~~~~~~~~l~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 239 (471)
T PRK10504 167 FLINIPVGIIGAIATLMLMPNYTM------QTRRFDLSGFLLLAVGMATLTLALDGSKGLGL-SPLAIAGLVAVGVVALL 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc------cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCc-chHHHHHHHHHHHHHHH
Confidence 9998887776665554 3444321 0000011110000000000 0011111011 11000000 0
Q ss_pred HHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHH
Q 008624 334 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVM 412 (559)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 412 (559)
....++...+ ++....+++|++.+.......++..+.. .....+.|.+++. .|.++ ...++...+..++.+++
T Consensus 240 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~ 313 (471)
T PRK10504 240 LYLLHARNNN-RALFSLKLFRTRTFSLGLAGSFAGRIGS----GMLPFMTPVFLQIGLGFSP-FHAGLMMIPMVLGSMGM 313 (471)
T ss_pred HHHHHHhcCC-CCccCHHHhcccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHH
Confidence 0000000111 1112235788887776655444444332 2355567777775 66665 78888888888888889
Q ss_pred HHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhH
Q 008624 413 TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRG 492 (559)
Q Consensus 413 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 492 (559)
.++.+++.||+++|+.+..+..+.++...++..... ..+.+......++.+.+.+.... .......+..|++.++.+
T Consensus 314 ~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~ 390 (471)
T PRK10504 314 KRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL--LGWYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSG 390 (471)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccch
Confidence 899999999999999998888877777665554321 12222222222233233333333 334666778899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhHHhhhhh
Q 008624 493 ISLAVLTNFGSNAIVTFAFSPLKVFIHFS 521 (559)
Q Consensus 493 ~g~~~~~~~~g~~i~~~~~g~~~~~~g~~ 521 (559)
.|+.++...+|..+++.+.|.+.+..|+.
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999888764
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-32 Score=269.63 Aligned_cols=373 Identities=15% Similarity=0.101 Sum_probs=249.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh----cchhhHHHHHHHHhHHHHhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA----PGLGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~ 213 (559)
+|++.++.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.+++++. ++++.+.+.|++.|++.+..
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~ 135 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG 135 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence 68899999999999999999999999999999999999999999999998887764 46778889999999999998
Q ss_pred hhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHH-HHhccCCchHHHHH
Q 008624 214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPSPRWLLL 292 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~ 292 (559)
.+.....+.|++|+++|++++++++.+.++|..+++.+.+...+...+||+.|++.++++++..+ ..++++|+|+....
T Consensus 136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 215 (438)
T TIGR00712 136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL 215 (438)
T ss_pred hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence 89899999999999999999999999999999999887765444333899999999888877654 44567776642100
Q ss_pred HhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccc-hhhhccCCchhHHHHHHHHHHHH
Q 008624 293 RAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS-FLEVFQGPNLKAFIIGGGLVLFQ 371 (559)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 371 (559)
+ +. ++ .+.+...+. .+ +.+ .+.+.+.. .+..++++.++...+...+....
T Consensus 216 ~---------~~-~~-------~~~~~~~~~-~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (438)
T TIGR00712 216 P---------PI-EE-------YRNDYPDDY-NE--------KAE---QELTAKEIFMQYVLPNKLLWYIAIANVFVYLL 266 (438)
T ss_pred C---------Cc-hh-------ccccccccc-cc--------ccc---cccchHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 0 00 00 000000000 00 000 00000001 12356777776665444333333
Q ss_pred HhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhc
Q 008624 372 QITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL 450 (559)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (559)
. ..+..|.|.++++ .|.+. ..+++...+..++.+++.++.|++.||+++++....+.....+..+.........
T Consensus 267 ~----~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (438)
T TIGR00712 267 R----YGVLDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNP 341 (438)
T ss_pred H----HHHHHhHHHHHHHccCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 2 3466788998876 46665 6788888889999999999999999999654322223222222211111111111
Q ss_pred CchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHH-HHHHHhhHHhHHhhhhhHHHHHHHH
Q 008624 451 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN-AIVTFAFSPLKVFIHFSIKMVSTWF 529 (559)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~~~~~g~~~~~~g~~~~~~~~~~ 529 (559)
..+.+......++.+.. ..+..........|.+|++.|+++.|+.+...++++ +++|.+.|.+.|..|+...+.+..+
T Consensus 342 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~ 420 (438)
T TIGR00712 342 AGNPLVDMICMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 420 (438)
T ss_pred CCchHHHHHHHHHHHHH-HccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHH
Confidence 11222222222222211 111111112356788999999999999999888875 6899999999999998888777666
Q ss_pred HHHHHHHHHHHhhccc
Q 008624 530 MILLFDWLVQFCRSCW 545 (559)
Q Consensus 530 ~~~~~~~~~~~~~~~~ 545 (559)
+.+++.+..+++.++.
T Consensus 421 ~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 421 GSILAVILLIVVMIGE 436 (438)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6655555555555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=262.33 Aligned_cols=372 Identities=16% Similarity=0.112 Sum_probs=258.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 008624 96 WSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRE 175 (559)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~ 175 (559)
+.........+.+..+...+....+.+.+|.+.++ +|.+..+.++..+++.++++++++++|+++||+|||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~ 83 (413)
T PRK15403 11 HAATLFFPMALILYDFAAYLTTDLIQPGIINVVRD-------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV 83 (413)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH
Confidence 33344444455666677777888888888887766 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhh
Q 008624 176 LIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255 (559)
Q Consensus 176 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 255 (559)
++.+.+++++++++++++++++.++++|+++|++.+...+...+++.|++++++|+++++++..+..+|..+||++++.+
T Consensus 84 l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l 163 (413)
T PRK15403 84 LITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAAL 163 (413)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877778888999999999999999999999999999999999998
Q ss_pred cCCCcchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHH
Q 008624 256 INAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334 (559)
Q Consensus 256 ~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (559)
.+.. +||+.|++.+++.++..+.. +.+||+++. + + +...
T Consensus 164 ~~~~-gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~--------~-------------------~---~~~~--------- 203 (413)
T PRK15403 164 MHFV-HWKVLFAIIAVMGLIAFVGLLLAMPETVKR--------G-------------------A---VPFS--------- 203 (413)
T ss_pred HHhc-CHHHHHHHHHHHHHHHHHHHHHhCCCCccc--------c-------------------C---CCCC---------
Confidence 8776 99999999998887776654 457775420 0 0 0000
Q ss_pred HhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHc-CCCCchhHHHHHHHHHHHHHHHH
Q 008624 335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMT 413 (559)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 413 (559)
.+...+.++++++++.++...+...+..... .....+.|.++++. +.+. .+.++.......+.+++.
T Consensus 204 -------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~----~~~~~~~P~~l~~~~g~s~-~~~gl~~~~~~~~~~i~~ 271 (413)
T PRK15403 204 -------AKSVLRDFRNVFRNRLFLTGAATLSLSYIPM----MSWVAVSPVILIDAGGMTT-SQFAWTQVPVFGAVIVAN 271 (413)
T ss_pred -------hHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----HHHHHhChHHHHHhcCCCH-HHHHHHHHHHHHHHHHHH
Confidence 0001123567788877776655444433332 23555678777765 6665 778888888888888888
Q ss_pred HHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHH
Q 008624 414 WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 493 (559)
Q Consensus 414 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 493 (559)
.+.+++.++..+++.......+..++..++........+..+..+...+++..+.+.... ......... ....+|++.
T Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p-~~~~~al~~-~~~~~G~a~ 349 (413)
T PRK15403 272 AIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFP-TLFRFTLFS-NNLPKGTVS 349 (413)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhH-HHHHHHhcc-CCCCCcHHH
Confidence 888877655444444333333333333333221100112222223333334334333332 222111111 223479999
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHH
Q 008624 494 SLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWF 529 (559)
Q Consensus 494 g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~ 529 (559)
++.+.....+..+++...+++.+. +....+....+
T Consensus 350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~ 384 (413)
T PRK15403 350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAV 384 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHH
Confidence 999999999999999988887776 44444444333
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=274.26 Aligned_cols=396 Identities=17% Similarity=0.192 Sum_probs=282.8
Q ss_pred HHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 008624 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 182 (559)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 182 (559)
+..++++.++..++....+..+|.+..+ +|.+..+.+|+.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 76 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGD-------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA 76 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence 4455667788888888888888888877 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcch
Q 008624 183 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW 262 (559)
Q Consensus 183 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 262 (559)
.+++.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++.+.+.. +|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w 155 (485)
T TIGR00711 77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HW 155 (485)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887 99
Q ss_pred HHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHH--HHH-HhhccCCCCCcccHHHHHHHH-----
Q 008624 263 RYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAI--SAL-GKLRRRPPGDKLSERQIEDTL----- 333 (559)
Q Consensus 263 r~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~----- 333 (559)
|+.|++.++++++..++. +++||+++. ..++.+..+..-... ... ......++.++..+.......
T Consensus 156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (485)
T TIGR00711 156 RWIFLINVPIGIIVVVVAFFILPRDKPA-----ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV 230 (485)
T ss_pred eehhhhhhHHHHHHHHHHHHHcCCcccc-----ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence 999999888877766554 445653320 000111000000000 000 001111111221111111000
Q ss_pred ---HHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHH
Q 008624 334 ---VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFK 409 (559)
Q Consensus 334 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 409 (559)
.....+. ..+++....++++++.++...+..++..+..+ ....+.|.++++ .|.++ .+++....+..++.
T Consensus 231 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~s~-~~~g~~~~~~~~~~ 304 (485)
T TIGR00711 231 AIIAFVVWEL-TDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLY----GSFYLLPLYLQQVLGYTA-LQAGLHILPVGLAP 304 (485)
T ss_pred HHHHHHHHHH-cCCCCccCHHHHcCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHH
Confidence 0000000 11112222467788877766555544444333 355677888876 56665 78999999999999
Q ss_pred HHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchh
Q 008624 410 LVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 489 (559)
Q Consensus 410 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 489 (559)
+++.++.|++.||++||+.+..+..+.+++..++..... .....+......++.+.+.+....+.. ....+..|++++
T Consensus 305 ~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~ 382 (485)
T TIGR00711 305 MLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT-PDTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKI 382 (485)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHH
Confidence 999999999999999999988888777777766552111 112222233333334444433333333 445566799999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHHhHHhhh
Q 008624 490 GRGISLAVLTNFGSNAIVTFAFSPLKVFIH 519 (559)
Q Consensus 490 ~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g 519 (559)
+++.|+.++.+.+|+.+++.+.+.+.++..
T Consensus 383 g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 383 ARGSSLSNFTRQLGGSIGTALITTILTNRT 412 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=271.84 Aligned_cols=393 Identities=20% Similarity=0.227 Sum_probs=286.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+..+.....+..+++++|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|+++|++.++...+.
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcC
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG 297 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 297 (559)
..++.|++++++|+.+..+ ......+..+++.+++++.. +||+.+++..+++++.++..++.||+|||+..+
T Consensus 193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~---- 264 (521)
T KOG0255|consen 193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK---- 264 (521)
T ss_pred HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc----
Confidence 9999999999999999999 77777778888888887766 899999999999998888877778999999985
Q ss_pred CCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcc
Q 008624 298 KGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 377 (559)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (559)
++.+++.+.+++..+.++.......................+++..+.++++.+.++...+...+..+...
T Consensus 265 -----g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~---- 335 (521)
T KOG0255|consen 265 -----GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFS---- 335 (521)
T ss_pred -----CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHh----
Confidence 66677777777766544222222222222111111111122233558888988866655544444443222
Q ss_pred hhhhchH-HHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHH
Q 008624 378 SVLYYAG-PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456 (559)
Q Consensus 378 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (559)
..++.- ......| .+........+.....+....+...|+.|||.....+.++..++++..++..... ..+.
T Consensus 336 -~~y~gl~~~~~~lg----~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 408 (521)
T KOG0255|consen 336 -LVYYGLSLNVSGLG----GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL--GGWL 408 (521)
T ss_pred -HHHHhhhhhhhhcC----chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc--hhHH
Confidence 222211 1122233 3455666666668888888889999999999999999999999998888765421 1123
Q ss_pred HHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHH
Q 008624 457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDW 536 (559)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 536 (559)
..+...+..++.+.++... +.+..|++|+..|..+.+...+...++++++|.+.-.... ......+...+....+..+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 486 (521)
T KOG0255|consen 409 HWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGL 486 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHH
Confidence 3444444444444455534 6899999999999999999999999999999987654433 2222222223444444555
Q ss_pred HHHHhhccccccCCchhhhh
Q 008624 537 LVQFCRSCWEQRTFSSSLLL 556 (559)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~ 556 (559)
+...+.++++.+...+.+++
T Consensus 487 ~~~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 487 LSLLLLPETKGKPLPGTLLD 506 (521)
T ss_pred HHHhcCcccCCCCCchhHHH
Confidence 55566777777666555443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=262.42 Aligned_cols=347 Identities=16% Similarity=0.173 Sum_probs=256.3
Q ss_pred hhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 008624 111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT 190 (559)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 190 (559)
+..........+.+|.+.++ +|.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 87 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAAD-------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL 87 (385)
T ss_pred HHHHHHHHHhcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 44455666777777777666 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhh
Q 008624 191 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA 270 (559)
Q Consensus 191 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~ 270 (559)
+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+.. +||+.|++.+
T Consensus 88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~ 166 (385)
T TIGR00710 88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLS 166 (385)
T ss_pred HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988877 9999999988
Q ss_pred HHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccch
Q 008624 271 PLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF 349 (559)
Q Consensus 271 ~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (559)
+..++..+.. ++.||+++.. ++.. .++....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~----------------~~~~~~~~ 199 (385)
T TIGR00710 167 LAGILLSALIFFILPETLPYE-------------------------------ARIQ----------------ISTYFETF 199 (385)
T ss_pred HHHHHHHHHHHHhCCCCCCCc-------------------------------ccCC----------------HHHHHHHH
Confidence 8777666554 4456543200 0000 00001124
Q ss_pred hhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 008624 350 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 428 (559)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 428 (559)
++.++++.++...+...+..... .....+.|.+++ +.+.++ ...+.......++.+++.++.+++.||+++|+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~ 274 (385)
T TIGR00710 200 LLLLKSKMFWGYALIYGASFGGF----FAFFSGAPFVYIDIMGVSP-SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL 274 (385)
T ss_pred HHHHcCchhHHHHHHHHHHHHHH----HHHHHcChHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 45667776665554433333322 234556677665 567766 788888889999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcCchhHHHHH-HHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHH
Q 008624 429 LIGGVCGIALSLLLLSAYYKILGGFPLVAVS-ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 507 (559)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 507 (559)
+..+..+..++.+++...... ....+..+. ..++.+.+.+. ..+.......|..| +.++++.++.+...+.++.+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~ 351 (385)
T TIGR00710 275 LRMGLILFAVSAVLLEITAIL-GLGSWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIV 351 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHH
Confidence 888777766666555443211 111222222 22223232332 23344466677766 679999999998888777777
Q ss_pred HHhhHHhHHhhhh
Q 008624 508 TFAFSPLKVFIHF 520 (559)
Q Consensus 508 ~~~~g~~~~~~g~ 520 (559)
+.+.+.+.+..++
T Consensus 352 ~~~~~~~~~~~~~ 364 (385)
T TIGR00710 352 GYLVSLIHGNTAW 364 (385)
T ss_pred HHHHHhccccChH
Confidence 7777755444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=261.72 Aligned_cols=344 Identities=19% Similarity=0.181 Sum_probs=253.1
Q ss_pred hhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh
Q 008624 114 GYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA 193 (559)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 193 (559)
.+....+.|.++.+.++ +|.+.++.+++.+++.+++.++++++|+++||+|||++++.+.++.+++.++++++
T Consensus 19 ~~~~~~~~p~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 19 FLATDMYLPAFKAIQAD-------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHhhHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666655 99999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHH
Q 008624 194 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLA 273 (559)
Q Consensus 194 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~ 273 (559)
++++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.+.. +||+.|++.+++.
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~ 170 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAIT 170 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Confidence 999999999999999998888888899999999999999999999999999999999999988887 9999999998888
Q ss_pred HHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhc
Q 008624 274 LLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353 (559)
Q Consensus 274 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (559)
++..+..++++|+++. ++ +++.+.++++++
T Consensus 171 ~~~~~~~~~~~~~~~~-------------~~-------------------------------------~~~~~~~~~~~~ 200 (401)
T PRK11043 171 LLLILPTLRLKPSKKA-------------RK-------------------------------------QSQDALTFKQLL 200 (401)
T ss_pred HHHHHHHHHcCCCCCc-------------cc-------------------------------------cchHHHHHHHHH
Confidence 7776666656554310 00 000111345566
Q ss_pred cCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhh
Q 008624 354 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 433 (559)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 433 (559)
+++.++...+...+..... .....+.|.++++.+.+. ...++......++.+++.++.+++.||+++|+......
T Consensus 201 ~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~ 275 (401)
T PRK11043 201 KSKTYLGNVLIFAACSAAF----FAWLTGSPFILEQMGYSP-ADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLL 275 (401)
T ss_pred cChhHHHHHHHHHHHHHHH----HHHHHHhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 6665554433332222222 234556788888888876 67788888888888999999999999999988766555
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHH
Q 008624 434 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 513 (559)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 513 (559)
...+++.+.+...........+..+....+.+.+.+. ..+.......+..| +.++++.|+.++....++.+++.+.|.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~ 353 (401)
T PRK11043 276 VLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGA-IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSA 353 (401)
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444433322211112222222233333333333 33444455556666 689999999999999999999999999
Q ss_pred hHHhhhhhH
Q 008624 514 LKVFIHFSI 522 (559)
Q Consensus 514 ~~~~~g~~~ 522 (559)
+.+......
T Consensus 354 l~~~~~~~~ 362 (401)
T PRK11043 354 LISTPLLTT 362 (401)
T ss_pred ccCCChhHH
Confidence 987544443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=266.45 Aligned_cols=349 Identities=14% Similarity=0.072 Sum_probs=260.9
Q ss_pred hhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 008624 111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT 190 (559)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 190 (559)
++..+........+|....+ ++.+..+++++.+++.++..++++++|+++||+|||++++.+.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLA-------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 33444444555555655555 78899999999999999999999999999999999999999999999999888
Q ss_pred Hhhc-----chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHH
Q 008624 191 AYAP-----GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 265 (559)
Q Consensus 191 ~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 265 (559)
++++ +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+.. +||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~ 160 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWA 160 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 8877 99999999999999999999999999999999999999999999999999999999999988877 99999
Q ss_pred HHhhhHHHHHHHHHHhccC--CchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccccc
Q 008624 266 YGLSAPLALLMGIGMWSLP--PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 343 (559)
Q Consensus 266 f~~~~~~~~~~~~~~~~~~--e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (559)
|++.++..++..+..+.++ |.++ . + .++.++... +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~-----------------~~~~~~~~~-------------~ 197 (365)
T TIGR00900 161 IWVDAVGFAISALLIVSVRIPELAA----------S---E-----------------IQALSNAVL-------------R 197 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCC----------c---c-----------------ccccchhHH-------------H
Confidence 9988877666555444332 2110 0 0 000000000 0
Q ss_pred ccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008624 344 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 422 (559)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 422 (559)
+....++.+++++.++...+...+....... ....+.|.+.++ .+.+. .+.+.......++.+++.++.+++.||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (365)
T TIGR00900 198 DTREGIKFVLKNPLLRTLLLLALLFNLVFAP---AIVALFPYVQSKYLGRGS-THYGWVLAAFGLGALLGALLLGLLGRY 273 (365)
T ss_pred HHHhHHHHHHcCcHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011245567777766655544443333221 122566777765 67666 788889999999999999999999999
Q ss_pred cCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHH
Q 008624 423 LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG 502 (559)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 502 (559)
.+||+.+..+..+.+++++.+.... ++.+..++..++.+.+.+ ...+...++..|..|++.|+++.|+.+...++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 348 (365)
T TIGR00900 274 FKRMALMTGAIFVIGLAILVVGLTP----PNFPLFLVLWFAIGVGYG-PINVPQGTLLQRRVPAELLGRVFGAQFSLSHA 348 (365)
T ss_pred hchhHHHHHHHHHHHHHHHHHHhhc----hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999988877666666665554421 113333333333333333 33455567888999999999999999999999
Q ss_pred HHHHHHHhhHHhHHhhh
Q 008624 503 SNAIVTFAFSPLKVFIH 519 (559)
Q Consensus 503 g~~i~~~~~g~~~~~~g 519 (559)
+..+++.+.|.+.|..|
T Consensus 349 ~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 349 AWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999998764
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=271.44 Aligned_cols=371 Identities=12% Similarity=0.087 Sum_probs=252.3
Q ss_pred cccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhh
Q 008624 119 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV 198 (559)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 198 (559)
.++..++.+..+ +|++.++.+++.+.+.++..++.+++|+++||+|||++++.+.++.++++++++++++++.
T Consensus 37 ~~~~~~~~i~~~-------~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (455)
T TIGR00892 37 AVTVFFKELQQI-------FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIE 109 (455)
T ss_pred chhhhHHHHHHH-------hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHH
Confidence 344455555555 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHH
Q 008624 199 LLV-GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 277 (559)
Q Consensus 199 l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 277 (559)
+++ .|+++|++.+...+...+++.++++ ++|++++++...+..+|..++|.+++.+.+.. |||+.|++.+++.++..
T Consensus 110 l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~~~~ 187 (455)
T TIGR00892 110 LYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLLHCC 187 (455)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 875 5799999998877778888899995 78999999999999999999999999988877 99999999998877665
Q ss_pred HHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCc
Q 008624 278 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 357 (559)
Q Consensus 278 ~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (559)
+..+++.+.+... + ..+.++ . +...... . .+ +... ....++. .+....++++++.
T Consensus 188 v~~~~~~~~~~~~--~--------~~~~~~-~---~~~~~~~--~--~~-~~~~-----~~~~~~~-~~~~~~~~~~~~~ 242 (455)
T TIGR00892 188 VCGALMRPVGPSQ--R--------VSKSKS-K---EGLPPDG--S--TK-KLSK-----KSTAEKI-NRFLDFSLFTHRG 242 (455)
T ss_pred HHHHHhCCCCccc--c--------cccccc-c---ccCCCCC--c--cc-cccc-----cchhhhh-hhhcchHHhcCch
Confidence 5544433221100 0 000000 0 0000000 0 00 0000 0000000 0111124677777
Q ss_pred hhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc--CCchhhhhhh--
Q 008624 358 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL--GRRPLLIGGV-- 433 (559)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~-- 433 (559)
++...+..++..+. ......+.+.++++.+++. ..++....+.+++.++++++.+++.||. ++++...+..
T Consensus 243 ~~~~~~~~~l~~~~----~~~~~~~l~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 317 (455)
T TIGR00892 243 FLVYLSGNVIMFLG----FFAPIIFLVPYAKDKGVDE-YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFAL 317 (455)
T ss_pred HHHHHHHHHHHHHH----ccchHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHH
Confidence 66555443333332 2335567788888888876 7888999999999999999999999974 3333333222
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHH
Q 008624 434 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 513 (559)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 513 (559)
++.+++.+++.. ..+.+..++..++.+.+. ....+...+++.|.+|+++++++.|+.++..++|.+++|.+.|.
T Consensus 318 ~~~~l~~ll~~~-----~~~~~~~~i~~~~~G~~~-g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~ 391 (455)
T TIGR00892 318 LFNGLTHLLCAL-----AGDYTGLVIYCIFFGLSF-GSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGR 391 (455)
T ss_pred HHHHHHHHHHHH-----hchHHHHHHHHHHHHHHh-chHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceee
Confidence 222222222221 123333333333343333 33344555778888999999999999999999999999999999
Q ss_pred hHHhhh-hhHHHHHHHHHHHHH
Q 008624 514 LKVFIH-FSIKMVSTWFMILLF 534 (559)
Q Consensus 514 ~~~~~g-~~~~~~~~~~~~~~~ 534 (559)
+.+..| +...+...+++.++.
T Consensus 392 l~~~~g~~~~~f~~~~~~~li~ 413 (455)
T TIGR00892 392 LVDATKNYKYIFYASGSIVVSA 413 (455)
T ss_pred eehhcCCcchHHHHhhHHHHHH
Confidence 999885 666666555444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-31 Score=257.26 Aligned_cols=363 Identities=21% Similarity=0.240 Sum_probs=274.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--chhhHHHHHHHHhHHHHhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 215 (559)
++++..+.+++.++++.|+.+++++.|+++||+|-|+++..+.++.++++++..++. +++.+++.|++||++.|..+|
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~p 147 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFP 147 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHh
Confidence 899999999999999999999999999999999999999999999999999998764 566889999999999999999
Q ss_pred hHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHh-ccCCchHHHHHHh
Q 008624 216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSPRWLLLRA 294 (559)
Q Consensus 216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~ 294 (559)
....+...|.|++||++..++...+..+|.+++.+++|++.+...||++.|++.++++++..++++ +..|+|..
T Consensus 148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~----- 222 (466)
T KOG2532|consen 148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK----- 222 (466)
T ss_pred hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-----
Confidence 999999999999999999999999999999999999999999844999999999999999888774 55666641
Q ss_pred hcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhh
Q 008624 295 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT 374 (559)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (559)
+....+.|.+...++..++..+++.+.+++++++++.++..++..+....
T Consensus 223 --------------------------h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~---- 272 (466)
T KOG2532|consen 223 --------------------------HPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNW---- 272 (466)
T ss_pred --------------------------CCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHH----
Confidence 11112222222222222222222257789999999988887755544444
Q ss_pred CcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc---------hhhhhhhHHHHHHHHHHH
Q 008624 375 GQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR---------PLLIGGVCGIALSLLLLS 444 (559)
Q Consensus 375 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---------~~~~~~~~~~~~~~~~~~ 444 (559)
+...+..|.|.|+++ ++++. .+.|++.++..+...+..+++|.++||+.+| ..-.++....+++++.++
T Consensus 273 ~~~~l~~y~PtY~~~VL~f~v-~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~ 351 (466)
T KOG2532|consen 273 GFYLLLTYLPTYLKEVLGFDV-RETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA 351 (466)
T ss_pred HHHHHHHHhhHHHHHHhCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee
Confidence 445688999999987 66666 8999999999999999999999999998663 122334444444444444
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH---hhhhh
Q 008624 445 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV---FIHFS 521 (559)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~---~~g~~ 521 (559)
... ....+..++++.+..+..+.... -.+.-..+..| ++.+..+|+.+.+..+.++++|.+.|.+.. ...|.
T Consensus 352 ~~~---~~~~~~a~~~l~~~~~~~g~~~~-Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~ 426 (466)
T KOG2532|consen 352 FTS---DEHRLLAVILLTIAIGLSGFNIS-GFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWR 426 (466)
T ss_pred ecC---CCcchHHHHHHHHHHHHcccchh-hhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHH
Confidence 432 12333344333333333332222 22222333334 899999999999999999999999999983 34788
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008624 522 IKMVSTWFMILLFDWLVQFC 541 (559)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~ 541 (559)
..|.+.+++.++..++..++
T Consensus 427 ~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 427 IVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHhchheeEe
Confidence 88887777776666544433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-31 Score=259.82 Aligned_cols=351 Identities=15% Similarity=0.105 Sum_probs=245.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH---h-hcchhhHHHHHHHHhHHHHhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---Y-APGLGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~ 213 (559)
+|.+..+.|++.+.+.+++.++++++|+++||+|||+++..+.++++++++++. + .++++.+++.|+++|++.+..
T Consensus 43 ~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~ 122 (402)
T TIGR00897 43 LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLF 122 (402)
T ss_pred hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHH
Confidence 899999999999999999999999999999999999999999999999877653 3 357889999999999999888
Q ss_pred hhhHhHHHhhcCCCCccchhhhHHHHHHHHHH-HHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH-hccCCchHHHH
Q 008624 214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGI-LLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLL 291 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~ 291 (559)
.+...+++.+++|+++|++++|+.+.+.++|. ++++++++.+.+.. ||+..++......++..++. ++.++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 198 (402)
T TIGR00897 123 AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAFVLTGGVIALFSNKDIFT--- 198 (402)
T ss_pred HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHhccCCCCC---
Confidence 88888889999999999999999999999997 68999999888776 87666555444333333333 33333210
Q ss_pred HHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHH
Q 008624 292 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 371 (559)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (559)
++.++ + +.+ ..+....+++++++|.++...+..++...
T Consensus 199 -----------~~~~~----------~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (402)
T TIGR00897 199 -----------PQHMQ----------T--REK------------------FSELGKAATILFTNPNVLLGGMVRIINTI- 236 (402)
T ss_pred -----------ccccc----------C--Ccc------------------hhhHHHHHHHHHcChhHHHHHHHHHHHHH-
Confidence 00000 0 000 00001124457777776655544333333
Q ss_pred HhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh-hhhHHHHHHHHHHHHHHhhc
Q 008624 372 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI-GGVCGIALSLLLLSAYYKIL 450 (559)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 450 (559)
.......|.|.++++.|.+. .+.+.......++.+++.++.|++.||++||+.+. .+.+...++.+.+.......
T Consensus 237 ---~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 312 (402)
T TIGR00897 237 ---GLFGFAVFLPMFVAELGFST-SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF 312 (402)
T ss_pred ---HHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 22346678898998888877 66778888888999999999999999999887653 23333333333332221111
Q ss_pred CchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHH
Q 008624 451 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFM 530 (559)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~ 530 (559)
.+..+..+...++.+.+.. ...+.. ....|..| ++|+++.|+.+....+++.++|.+.|.+.+..|+...+++.+++
T Consensus 313 ~~~~~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~ 389 (402)
T TIGR00897 313 GHSFAVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL 389 (402)
T ss_pred CCcHHHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 1222323333333333332 233333 44556644 78999999999999999999999999999999988888877776
Q ss_pred HHHHHHHHHHh
Q 008624 531 ILLFDWLVQFC 541 (559)
Q Consensus 531 ~~~~~~~~~~~ 541 (559)
.++..++..+.
T Consensus 390 ~~i~~~~~~~~ 400 (402)
T TIGR00897 390 YVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHh
Confidence 66665555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-31 Score=258.42 Aligned_cols=359 Identities=16% Similarity=0.109 Sum_probs=254.9
Q ss_pred HhhhhhhhccccccccccC-CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-HHHHHHHHHH
Q 008624 110 GLLFGYDIGATSGATISLQ-SPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI-IAAVLYALGA 187 (559)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~-~~~~~~~i~~ 187 (559)
.++.++..+...+.++... ++ +|.+..++|++.+++.++..+.+++.|+++||+||||.++ .+.++.+++.
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~ 78 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEE-------VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALAC 78 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 3455555666666666543 34 8999999999999999999999999999999999988765 4666667788
Q ss_pred HHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchh--hhHHHHHHHHHHHHHHHHhhhhcCCCcchHHH
Q 008624 188 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL--ISLKELFIVLGILLGYFVGSFQINAVGGWRYM 265 (559)
Q Consensus 188 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 265 (559)
++++++++++.+++.|+++|.+.+...|...+++.|+.++++|++. .++...+.++|.++|+.+++.+.+.. +||+.
T Consensus 79 ~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~ 157 (375)
T TIGR00899 79 LLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTVM 157 (375)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHHH
Confidence 8899999999999999999988888888888999999887777654 67888889999999999999988877 99999
Q ss_pred HHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccc
Q 008624 266 YGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 344 (559)
Q Consensus 266 f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (559)
|++.+++.++..+.. +++||.|++... +.
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~ 187 (375)
T TIGR00899 158 FLTAALAFVLCGVLVWLFLPSYPRGAPG--------------------------------------------------AL 187 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCccc--------------------------------------------------cc
Confidence 999988877766655 457775531000 00
Q ss_pred cccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 423 (559)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 423 (559)
...+.++.++++.++.......+...... ....+.|.++ ++.+.++ ...+.......+..+++.++.|++.||+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~ 262 (375)
T TIGR00899 188 TRLEVRGLLASRDTRLLFVACTLMWGCNI----LYIINMPLLIIHELGLPD-KLAGLMMGTAAGLEIPFMLLAGYLIKRF 262 (375)
T ss_pred CcchhhhhhcCcchHHHHHHHHHHHHHHH----HHHhhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 00012234555555544433333322221 2334456665 4567765 6677777777777788889999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHH
Q 008624 424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 503 (559)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 503 (559)
++|+.+..+.++..+....+... ++.+..+....+.+.+.+. ..+....+..|..| ++++++.++.+...++|
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 335 (375)
T TIGR00899 263 GKRRLMLLAALAGVAFYTGLAAD-----NSLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMP-GRAGAATTLYTNTGRVG 335 (375)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCc-chhhHHHHHHHHHHHHH
Confidence 99998877665544443333221 2233333333333333332 23444567778877 46779999999999999
Q ss_pred HHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHH
Q 008624 504 NAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (559)
..++|.+.|.+.+..|+...+...+++.++..++.
T Consensus 336 ~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 336 WIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999998888777666655554444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=259.57 Aligned_cols=440 Identities=19% Similarity=0.213 Sum_probs=312.9
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 93 AFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTT-WFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG 171 (559)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 171 (559)
...|+... .+.+..++.+.++||...++...+-+...+...++ .=+.++...+.+..+..+|..+|++++|+++||+|
T Consensus 34 g~qw~~fk-~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G 112 (538)
T KOG0252|consen 34 GLQWKHFK-AIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG 112 (538)
T ss_pred chhHHHHH-HHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33454443 46677899999999999999887776655433321 01256777899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc-------chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHH
Q 008624 172 RKRELIIAAVLYALGALTTAYAP-------GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 244 (559)
Q Consensus 172 rr~~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 244 (559)
||+++...++++.+++++++++. -.+++.+.|++.|+|.|+-+|.+.++.+|...+++||...+.+.+..+.|
T Consensus 113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~G 192 (538)
T KOG0252|consen 113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFG 192 (538)
T ss_pred chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchh
Confidence 99999999999999999888753 25789999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHhhhhcC----CC----------cchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHH
Q 008624 245 ILLGYFVGSFQIN----AV----------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAIS 310 (559)
Q Consensus 245 ~~~g~~~~~~l~~----~~----------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 310 (559)
...|.+++-.+.. .. .-||..|.+.++++++.+...+.+||+++|..... ++.+.+.
T Consensus 193 ilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~--------~~~~~a~- 263 (538)
T KOG0252|consen 193 ILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVS--------KKLKQAA- 263 (538)
T ss_pred HhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhh--------cCHhhhh-
Confidence 8887777655432 11 14999999999999999888899999998763221 1111111
Q ss_pred HHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHc
Q 008624 311 ALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA 390 (559)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (559)
++..+..+. ..++...........++....+...+..+ .-..+++.+..++..-..++....+...+++..
T Consensus 264 --~d~~k~~~~------~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i 334 (538)
T KOG0252|consen 264 --GDMKKVLSV------DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI 334 (538)
T ss_pred --hcccccccc------ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh
Confidence 111111000 00000000000011111112233334333 235566666777777777777888888888887
Q ss_pred CCCCchhHH--------HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 008624 391 GFSAAADAT--------RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALL 462 (559)
Q Consensus 391 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (559)
+..+..+.- ....+...+.++|.++...++|++||++..+.+++++.+..+.++...... .......+...
T Consensus 335 g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~-~~~~Gf~v~y~ 413 (538)
T KOG0252|consen 335 GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL-ENTIGFVVLYS 413 (538)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc-cccCceeehHH
Confidence 766532222 112222233344666667789999999999999999999988887643211 12233344445
Q ss_pred HHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH-----hhhhhHHHHHHHHHHHHHHHH
Q 008624 463 LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV-----FIHFSIKMVSTWFMILLFDWL 537 (559)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-----~~g~~~~~~~~~~~~~~~~~~ 537 (559)
+...+..++-+.....+.+|.+|++.|++..|+..+.+-.|++++...+.++.+ ..|....+++.+.+.++..+.
T Consensus 414 l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~ 493 (538)
T KOG0252|consen 414 LTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILF 493 (538)
T ss_pred HHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhe
Confidence 555566667777788899999999999999999999999999999999999999 889999999988888876666
Q ss_pred HHHhhccccccCCchh
Q 008624 538 VQFCRSCWEQRTFSSS 553 (559)
Q Consensus 538 ~~~~~~~~~~~~~~~~ 553 (559)
.+++ ++.++|..+|.
T Consensus 494 T~l~-pEtk~~~leei 508 (538)
T KOG0252|consen 494 TLLI-PETKGKSLEEI 508 (538)
T ss_pred eEEe-ecccccCHHHh
Confidence 5554 48877776654
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-31 Score=262.07 Aligned_cols=366 Identities=18% Similarity=0.097 Sum_probs=257.8
Q ss_pred HHhhhhhhhccccccccccCCCCCCCCccccCChhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 008624 109 GGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQ-----LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 183 (559)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~ 183 (559)
+.++.++......+.+|.+..+ +|++..+ .|++.+++.++..++.+++|+++||+|||++++.+.++.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 94 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQ-------LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM 94 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHH-------hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 3455556666667777777655 7777544 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchH
Q 008624 184 ALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWR 263 (559)
Q Consensus 184 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 263 (559)
+++.++++++++++.+++.|++.|++.+ ..+....++.|++|+++|++++++...+..+|.+++|.+++.+.+.. +||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~ 172 (408)
T PRK09874 95 GIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GLR 172 (408)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHH
Confidence 9999999999999999999999999865 56778888999999999999999999999999999999999988877 999
Q ss_pred HHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccc
Q 008624 264 YMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 342 (559)
Q Consensus 264 ~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (559)
+.|++.+++.++..+.. ++++|.++.. ++.+ ..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~-------------------~~~-------------- 207 (408)
T PRK09874 173 PVFFITASVLFLCFLVTLFCIRENFQPV------------SKKE-------------------MLH-------------- 207 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccc------------cchh-------------------hhH--------------
Confidence 99999888877665544 4455532100 0000 000
Q ss_pred cccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCch---hHHHHHHHHHHHHHHHHHHHHHH
Q 008624 343 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAA---DATRVSVVIGVFKLVMTWIAVAK 419 (559)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l 419 (559)
..+..+.++++.+........+.... .......+.+.+..+.+.+... ..+.+....+++.+++.+..|++
T Consensus 208 ---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l 281 (408)
T PRK09874 208 ---MREVVTSLKNPKLVLSLFVTTLIIQV---ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKL 281 (408)
T ss_pred ---HHHHHHhCcCCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112234444443322211111111 1122334455555554333211 23455566678888889999999
Q ss_pred hhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHH
Q 008624 420 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 499 (559)
Q Consensus 420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 499 (559)
.||++||+.+..+..+..++.+.+... ...+...+...+.+.+.+ ...+...+...+..|++.+|+.+++.+..
T Consensus 282 ~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (408)
T PRK09874 282 GDRIGPEKILITALIFSVLLLIPMSFV-----QTPLQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQSF 355 (408)
T ss_pred HhccccchhHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceeeehHHHHH
Confidence 999999999888777666555544332 223333333333333333 33344445666777889999999999999
Q ss_pred HHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 008624 500 NFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQF 540 (559)
Q Consensus 500 ~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 540 (559)
..+|..++|.+.|.+.+..|+...+...+++.++..++...
T Consensus 356 ~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 356 RDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888777766665555443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=269.23 Aligned_cols=371 Identities=18% Similarity=0.112 Sum_probs=256.2
Q ss_pred hhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 008624 111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT 190 (559)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 190 (559)
+...++...++...|.+.++ +|++..+.+++.+++.++..++.++.|+++||+|||++++.+.++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 77 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEE-------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF 77 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHH-------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH
Confidence 34445566666666766655 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHH-HHhhhhcCCCcchHHHHHhh
Q 008624 191 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY-FVGSFQINAVGGWRYMYGLS 269 (559)
Q Consensus 191 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~~~~~l~~~~~~wr~~f~~~ 269 (559)
+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ ++++.+.+.. +||+.|++.
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~ 156 (379)
T TIGR00881 78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFIVP 156 (379)
T ss_pred HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 5666666665 999999998
Q ss_pred hHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccc
Q 008624 270 APLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS 348 (559)
Q Consensus 270 ~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (559)
+++.++..+.. ++.+|+|+....+ + .++ ...++.. . + ..+.+.+....+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~----------~~~~~~~-~-~------~~~~~~~~~~~~~~ 208 (379)
T TIGR00881 157 GIIAIIVSLICFLLLRDSPQSCGLP---------P-AEE----------MPNEEPD-G-D------AEKKEEELTKKQIF 208 (379)
T ss_pred HHHHHHHHHHHheeeCCCccccccC---------c-ccc----------Ccccccc-c-c------cccccccccchHHH
Confidence 88777655544 5566655311000 0 000 0000000 0 0 00000001111223
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 008624 349 FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 427 (559)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 427 (559)
.+++++++.++...+...+..... .....+.|.++++ .+.+. .+.+.......++.+++.++.+++.||..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 283 (379)
T TIGR00881 209 LQYVLLNKVLWYISLGYVFVYVVR----TGILDWSPLYLTQEKGFSK-EKASWAFTLYELGGLVGTLLAGWLSDKLFNGR 283 (379)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence 456677777666555444444333 2355677777754 57765 78888899999999999999999999864333
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHH
Q 008624 428 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 507 (559)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 507 (559)
...............+.........+.+......+ ..+....+..+....+..|.+|++.|+++.|+.+....+|+.++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 362 (379)
T TIGR00881 284 RGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLF-ALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILA 362 (379)
T ss_pred chHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHH-HHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhh
Confidence 22222221111111111111100112222222222 22222223333444677899999999999999999999999999
Q ss_pred HHhhHHhHHhhhhhHH
Q 008624 508 TFAFSPLKVFIHFSIK 523 (559)
Q Consensus 508 ~~~~g~~~~~~g~~~~ 523 (559)
|.+.|.+.|..|+...
T Consensus 363 ~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 363 GLPLGYLADGFGWAGA 378 (379)
T ss_pred hhhHHHHHHhhccccc
Confidence 9999999999887643
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=257.77 Aligned_cols=361 Identities=16% Similarity=0.115 Sum_probs=253.8
Q ss_pred HHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 008624 104 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 183 (559)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~ 183 (559)
..+.+..+..++.....+..+|.+.++ +|++..+.|++.+.+.+++.+++++.|++.||+|||+++..+.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~-------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 344455577777777777788877655 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcC-C-
Q 008624 184 ALGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-A- 258 (559)
Q Consensus 184 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~- 258 (559)
+++++++ .++++++.++++|+++|+|.|...+..+.++.|+.++++|.+.+++.+..+.+|..+|+.+++.+.. .
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999886 4689999999999999999999999999999998777777778999999999999999999876431 0
Q ss_pred ----------------C-------cchHHHHHhhh-HHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHH
Q 008624 259 ----------------V-------GGWRYMYGLSA-PLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 313 (559)
Q Consensus 259 ----------------~-------~~wr~~f~~~~-~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (559)
. .+||++|+... +..++..++. ..+||.+. +
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~--------------~---------- 237 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS--------------D---------- 237 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------------c----------
Confidence 0 15666776433 3333322222 22343210 0
Q ss_pred hhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHH-HH-cC
Q 008624 314 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QS-AG 391 (559)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 391 (559)
+. .+.+..+.....++++++|.++...+..++...... ....|.+.++ ++ .|
T Consensus 238 --------~~--------------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~l~~~~~g 291 (438)
T PRK10133 238 --------NH--------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT----ACWSYLIRYAVEEIPG 291 (438)
T ss_pred --------cc--------------ccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCC
Confidence 00 000000111234567788877665544433333322 2444566564 43 57
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcc
Q 008624 392 FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQIS 471 (559)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (559)
.++ ..++.......++.++++++++++.||+++|+++..+..+..+.+++.... ... ..+..+.+.+.+.+..
T Consensus 292 ~s~-~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~l~glg~~~i 364 (438)
T PRK10133 292 MTA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGH-VGLIALTLCSAFMSIQ 364 (438)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CCh-HHHHHHHHHHHHHHHH
Confidence 776 889999999999999999999999999999998887766665555443321 111 2233333444444443
Q ss_pred cccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh-hhHHHHHHHHHH
Q 008624 472 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH-FSIKMVSTWFMI 531 (559)
Q Consensus 472 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~ 531 (559)
.|..++...+..| ++.+++.++..+ ..+|+.++|.+.|.+.|..| ....+++...+.
T Consensus 365 -~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~ 422 (438)
T PRK10133 365 -YPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_pred -HHHHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 4566677888777 457778887764 55788999999999999887 455554433333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=256.26 Aligned_cols=371 Identities=19% Similarity=0.184 Sum_probs=257.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 008624 97 SSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 176 (559)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~ 176 (559)
+.....++++++..++...|...+......+... ||++.+..|++++.+.+.+.+++|++|+++|||.||+++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~-------fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~ 101 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTY-------FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI 101 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh-------cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE
Confidence 3334456667777888888888877766666554 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhc
Q 008624 177 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI 256 (559)
Q Consensus 177 ~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 256 (559)
.+|.++|.++.++++++..||+++++|.+.|+|.+...++.+++++|.+|..+|++++++++.+..+|..+|.+++..+.
T Consensus 102 ~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va 181 (493)
T KOG1330|consen 102 AVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVA 181 (493)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcchHHHHHhhhHHHHHHHHHHhc-cCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHH
Q 008624 257 NAVGGWRYMYGLSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS 335 (559)
Q Consensus 257 ~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (559)
.....|||.|++.++++++..++.++ .+|+.|- ..++ ..+++.
T Consensus 182 ~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg--------------a~~~-------~~~~~~--------------- 225 (493)
T KOG1330|consen 182 SLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG--------------ARDE-------VDGENK--------------- 225 (493)
T ss_pred cCccceEEEEEeehHHHHHHHHHHHhhccCcccc--------------cccc-------cccCCc---------------
Confidence 87745999999999999998887754 5554320 0000 000000
Q ss_pred hhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHH----HcCCCCchhHHHHHHHHHHHHHH
Q 008624 336 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ----SAGFSAAADATRVSVVIGVFKLV 411 (559)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 411 (559)
.........++.+.+.+++.+....+.+....+. ...+.+|.|.+.. -.+.+. ....++..+...++.+
T Consensus 226 --~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv----~Gs~sww~p~~~~~~~~~~~~~~-~~~~ifg~vt~~~G~l 298 (493)
T KOG1330|consen 226 --MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFV----IGSLSWWAPAFIYYSYELIGFDH-NATLIFGGVTCAGGSL 298 (493)
T ss_pred --CCCCccchHHHHHHHHccCceeeehHHHHHHHHh----ccccchhhhhHHHHHHHHhCCcc-ccchhhhhHHHhhchh
Confidence 0001112223344455555544444333333332 2345555555443 244444 5667777888889999
Q ss_pred HHHHHHHHhhhcCCc----hhh----hhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeeccc
Q 008624 412 MTWIAVAKVDDLGRR----PLL----IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI 483 (559)
Q Consensus 412 ~~~~~g~l~d~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (559)
|.+++|.++||+.++ ... +.+.....++...+...........+..+ .+++++............-+..|+
T Consensus 299 Gvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~-il~~~g~~~~~~~~a~n~~i~l~v 377 (493)
T KOG1330|consen 299 GVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGL-ILFLVGETISWFNWATNNPIFLEV 377 (493)
T ss_pred hheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHhcccccccceeeEe
Confidence 999999999994321 111 11111111121111111111112222222 222222222222233444677888
Q ss_pred CCcchhhhHHHHHHHHHH-HHHHHHHHhhHHhHHhh
Q 008624 484 FPLRTRGRGISLAVLTNF-GSNAIVTFAFSPLKVFI 518 (559)
Q Consensus 484 ~p~~~~~~~~g~~~~~~~-~g~~i~~~~~g~~~~~~ 518 (559)
+|++.|.++.++...+.. .|.+-+|++.|.+.|+.
T Consensus 378 V~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 378 VPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred cCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 999999999999987754 44555666999999876
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-30 Score=255.26 Aligned_cols=355 Identities=15% Similarity=0.065 Sum_probs=248.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
++.+..+.+++.+++.+++.++.+++|+++||+|||++++.+.+++++++++++++.+. ++.|+++|++.+...|..
T Consensus 33 ~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~ 109 (393)
T PRK11195 33 LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAK 109 (393)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999888777664 788999999999999999
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcC
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG 297 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 297 (559)
.+++.|++|+++|++++++.+....+|.++||.+++.+.+. .|+..+.+.+...++..+..+.+||+|....
T Consensus 110 ~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~------ 181 (393)
T PRK11195 110 YGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIYLLAALFNLFIPRLGARRP------ 181 (393)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccccc------
Confidence 99999999999999999999999999999999999998874 4888887776665555555566777542100
Q ss_pred CCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcc
Q 008624 298 KGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 377 (559)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (559)
+. +.+. .....+. ...++.+++++.++.......+......
T Consensus 182 ~~--------------------~~~~--~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~---- 222 (393)
T PRK11195 182 GQ--------------------SWNP--IALLRDF-------------FHACRVLWRDKLGRFSLAGTTLFWGAGA---- 222 (393)
T ss_pred cc--------------------CCCH--HHHHHHH-------------HHHHHHHHhCchhHHHHHHHHHHHHHHH----
Confidence 00 0000 0000000 0012456677666554443333222222
Q ss_pred hhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHH
Q 008624 378 SVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456 (559)
Q Consensus 378 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (559)
...+..+.++++ .+.++ .+.+......+++.+++.++.+++.||.++++.+..+. +.++....+... ++.+.
T Consensus 223 ~~~~~~~~~~~~~lg~s~-~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-----~~~~~ 295 (393)
T PRK11195 223 TLRFLVLAWAPVALGITL-NQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-----HSLLP 295 (393)
T ss_pred HHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-----hHHHH
Confidence 233344445544 56665 78999999999999999999999999988887776664 333332222221 22333
Q ss_pred HHHHHHHHHHHhhcccccccceeecccCCcch-hhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHH
Q 008624 457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFD 535 (559)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 535 (559)
.....++.+.+.+....+. .+...+..|++. +|++.++.+..++++..++..+.+. .+..|....+.+.+++.+...
T Consensus 296 ~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 373 (393)
T PRK11195 296 AYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFGLLVAL 373 (393)
T ss_pred HHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHH
Confidence 3333333433333333333 355667655544 7999999999999999999998884 478888888887777666665
Q ss_pred HHHHHhhccc-cccCCc
Q 008624 536 WLVQFCRSCW-EQRTFS 551 (559)
Q Consensus 536 ~~~~~~~~~~-~~~~~~ 551 (559)
.+...++.+. ++|+++
T Consensus 374 ~~~~~~~~~~~~~~~~~ 390 (393)
T PRK11195 374 AMALLWRWHRRNQRQFD 390 (393)
T ss_pred HHHHHHHHHHhcccccc
Confidence 5555444433 335544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=240.42 Aligned_cols=348 Identities=19% Similarity=0.197 Sum_probs=271.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchh---hHHHHHHHHhHHHHhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG---VLLVGRLLYGLGIGLAM 214 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~---~l~~~r~l~G~~~g~~~ 214 (559)
+|+|+.|.+++.++..+..++.-++.|.+.||||.|++..++.++..+-++..+++.+++ ++++.+++.|++.+ .+
T Consensus 44 ~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sF 122 (417)
T COG2223 44 FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SF 122 (417)
T ss_pred cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-ee
Confidence 999999999999999999999999999999999999999999999999999999987665 99999999999855 78
Q ss_pred hhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcc---hHHHHHhhhHHHHHHHHHHh-ccCCchHHH
Q 008624 215 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG---WRYMYGLSAPLALLMGIGMW-SLPPSPRWL 290 (559)
Q Consensus 215 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~---wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~ 290 (559)
.+...++++++|++++|.++|+.. ..|+|..+..+++..++... + ||....+..+..++..++.+ .+.|.|...
T Consensus 123 av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r 200 (417)
T COG2223 123 AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR 200 (417)
T ss_pred hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence 899999999999999999999999 88999999999888888777 6 99999888888888666654 455554310
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccc-cchhhhccCCchhHHHHHHHHHH
Q 008624 291 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE-GSFLEVFQGPNLKAFIIGGGLVL 369 (559)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 369 (559)
. ..++.. ..++.++++++.|.+.+.+
T Consensus 201 ~-------------------------------------------------~~~~~~~~~~~~v~~~~~~W~lsllY---- 227 (417)
T COG2223 201 A-------------------------------------------------SVKPQLPAQLKAVFSNKDTWLLSLLY---- 227 (417)
T ss_pred c-------------------------------------------------cccccchhHHHHHhcCcchHHHHHHH----
Confidence 0 001111 3456778888888777544
Q ss_pred HHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHh
Q 008624 370 FQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 448 (559)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (559)
+..+.++..+..++|.|+++ ++.++ .+++.......+.+.+.++++|+++||+|.++.+...+..++++..++.....
T Consensus 228 ~~tFG~Fvgfs~~l~~~~~~~fg~~~-~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~ 306 (417)
T COG2223 228 FATFGGFVGFSAYLPMYLVTQFGLSP-VTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT 306 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc
Confidence 44445556688899998866 56665 78889999999999999999999999999999999999988888887776432
Q ss_pred hcC--chhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh-hhHHHH
Q 008624 449 ILG--GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH-FSIKMV 525 (559)
Q Consensus 449 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~ 525 (559)
... ...+..+...+....+.+.+- ...+.++...+| ++.|.+.|+..+++.+|++.-|...+...+..| +...+.
T Consensus 307 ~~~~~~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~ 384 (417)
T COG2223 307 GFGHGGSFVVFVAVFLALFVFAGLGN-GSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFM 384 (417)
T ss_pred ccccCcchHHHHHHHHHHHHHhccCc-chheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHH
Confidence 211 122333332333333333333 345577888877 689999999999999999999999999999999 555555
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 008624 526 STWFMILLFDWLVQFCRSC 544 (559)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~ 544 (559)
.+..+.+++.++....+.+
T Consensus 385 ~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 385 LLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555555555544444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-31 Score=256.36 Aligned_cols=345 Identities=27% Similarity=0.362 Sum_probs=253.5
Q ss_pred HHhhhhhhhcccccccc-ccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 008624 109 GGLLFGYDIGATSGATI-SLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 187 (559)
Q Consensus 109 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 187 (559)
+.++..+......+.++ .+.++ +|.+..+++++.+++.++..+++++.|+++||+|||++++.+.++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~ 76 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEE-------LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGS 76 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCC-------STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHH
Confidence 34555555666666677 55555 89999999999999999999999999999999999999999999999997
Q ss_pred HHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHH
Q 008624 188 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYG 267 (559)
Q Consensus 188 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 267 (559)
++..++++++.++++|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+++.+.+.. +||+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~~ 155 (352)
T PF07690_consen 77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRWAFL 155 (352)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHHH
T ss_pred HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-ccccccc
Confidence 777777888899999999999999999999999999999999999999999999999999999999988776 9999999
Q ss_pred hhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccc
Q 008624 268 LSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 346 (559)
Q Consensus 268 ~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (559)
+.+++.++..++. ++++++++....+ ++.++. .+.++..
T Consensus 156 ~~~~~~~~~~il~~~~~~~~~~~~~~~-------------------------~~~~~~---------------~~~~~~~ 195 (352)
T PF07690_consen 156 ISAILSLIAAILFILFLPEPPPPRERE-------------------------SPKESE---------------SKKPKPL 195 (352)
T ss_dssp HHHHHHHHHHHHHHCCC---STTTT---------------------------SSTTTT-----------------HHHCC
T ss_pred cccchhhhhhhhHhhhhhhcccccccc-------------------------cccccc---------------ccccccc
Confidence 9999998887753 4454433210000 000000 0011111
Q ss_pred c-chhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHH-HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008624 347 G-SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 424 (559)
Q Consensus 347 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~ 424 (559)
. .++.+++++.++..++...+..+.. .....+.|.+ .+..+.+.....+.......+..+++.++.+++.||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (352)
T PF07690_consen 196 KPGFKSLFKNPVLWILLIAFFLFFFVF----SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFG 271 (352)
T ss_dssp CH-CTHHHHHHCCHHHHHHHHHHHHHH----HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhhhhhhhhHHHHHH----HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 2556666666653333333332222 2366777777 45667762268888899999999999999999999999
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHH
Q 008624 425 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 504 (559)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 504 (559)
+++..........+..+.+...... .+....+...++.+.+.+ ...+....+..|..|++++|++.|+.+...++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 348 (352)
T PF07690_consen 272 RRRRLLIAILLLILGALGLLLLPFS--SSPVWLIIALFLIGFGFG-IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGG 348 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSHHH--CHHHHHHHHHHHHHHHHH-HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9877777666666665555443221 223333334444444333 3345666889999999999999999999999999
Q ss_pred HHHH
Q 008624 505 AIVT 508 (559)
Q Consensus 505 ~i~~ 508 (559)
.++|
T Consensus 349 ~igP 352 (352)
T PF07690_consen 349 IIGP 352 (352)
T ss_dssp HHHH
T ss_pred HHCC
Confidence 9887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-30 Score=252.72 Aligned_cols=319 Identities=16% Similarity=0.140 Sum_probs=236.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+|++..++|++.+.+.++..+..+++|+++||+|||++++.+.++.+++.+++.++++++.+++.|+++|++.+...+..
T Consensus 41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~ 120 (400)
T PRK11646 41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPR 120 (400)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhc
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQ 296 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~ 296 (559)
.+++.|++|+++|++++++.....++|..+||.+++.+. .. +||+.|++.++..++..++. ++.||.+.
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-------- 190 (400)
T PRK11646 121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGAVLFVLAAAFNAWLLPAYKL-------- 190 (400)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHhCCcccc--------
Confidence 999999999999999999999999999999999999988 55 99999999888776655443 44444110
Q ss_pred CCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCc
Q 008624 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 376 (559)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (559)
+ + . .++...++++.++++.++...+.........
T Consensus 191 ------~---------------~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 224 (400)
T PRK11646 191 ------S---------------T--V-------------------RTPVREGMTRVLRDKRFVTYVLTLTGYYMLA---- 224 (400)
T ss_pred ------c---------------c--c-------------------chhhHHHHHHHHcCchHHHHHHHHHHHHHHH----
Confidence 0 0 0 0000112455667766554443322222211
Q ss_pred chhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-hcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhH
Q 008624 377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD-DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 455 (559)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (559)
.....+.|.++++.+.++ ...+.+.....++.+.+....+++.| |++.++.+..+..+.+++.+++... ++.+
T Consensus 225 ~~~~~~~p~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~ 298 (400)
T PRK11646 225 VQVMLMLPIMVNDIAGSP-SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-----SNLQ 298 (400)
T ss_pred HHHHHhhhhhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----hhHH
Confidence 123456788888766655 67777777777766655555555554 5665666666666666665555432 2222
Q ss_pred HHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh
Q 008624 456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH 519 (559)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g 519 (559)
......++.+.+.. ...|...++..+..|++++|++.|+.+...++|..++|.+.|.+.|..+
T Consensus 299 ~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 299 QLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 22222233333332 3334555778899999999999999999999999999999999999864
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-30 Score=252.25 Aligned_cols=361 Identities=17% Similarity=0.128 Sum_probs=263.6
Q ss_pred HHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 008624 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 182 (559)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 182 (559)
+.++++..+..|+..+..++.+|.++++ +|++..+.|++.+.+.+++.+++++.|++.||+|||++++++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~-------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l 77 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQA-------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL 77 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 3455666788888888888888888766 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh---hcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC
Q 008624 183 YALGALTTAY---APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 259 (559)
Q Consensus 183 ~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 259 (559)
++++.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+|+.+++.+....
T Consensus 78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~ 157 (410)
T TIGR00885 78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN 157 (410)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999988644 4689999999999999999999999999999999999999999999999999999999988774321
Q ss_pred -------------------------cchHHHHHhhhHHHHHHHHHHhc--cCCchHHHHHHhhcCCCchhhHHHHHHHHH
Q 008624 260 -------------------------GGWRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISAL 312 (559)
Q Consensus 260 -------------------------~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (559)
.+||++|++.+++.++..++..+ .||.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~------------------------ 213 (410)
T TIGR00885 158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH------------------------ 213 (410)
T ss_pred CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------------------------
Confidence 25999999988877766554433 232110
Q ss_pred HhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCC
Q 008624 313 GKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGF 392 (559)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (559)
+ ++ ++.....+.++++|+|.++...+..+++...+. ....|.+.+.++.+.
T Consensus 214 -----~---~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~----~~~s~l~~y~~~~~~ 264 (410)
T TIGR00885 214 -----S---DA-----------------KQISFSASLSRLARIRHYREGVIAQFFYVGVQI----MCWTFIIQYAVRLIP 264 (410)
T ss_pred -----c---cc-----------------ccccchhhHHHHHhChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccC
Confidence 0 00 000011123466777777665555555444443 245667777766432
Q ss_pred CC-chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcc
Q 008624 393 SA-AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQIS 471 (559)
Q Consensus 393 ~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (559)
.. ...+.........+..+|+++++++.||+++|+.+.+...+.++.++++... + .......+.+.+++.+..
T Consensus 265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-----~-~~~~~~~l~~~glf~s~~ 338 (410)
T TIGR00885 265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-----G-GHVGLYCLTLCSAFMSLM 338 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----C-ChHHHHHHHHHHHHHHHH
Confidence 22 1334445556667889999999999999999998887777777666665542 1 223344444555555555
Q ss_pred cccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhh------hhhHHHHHHHHHHH
Q 008624 472 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFI------HFSIKMVSTWFMIL 532 (559)
Q Consensus 472 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~------g~~~~~~~~~~~~~ 532 (559)
+ |..++...+..+++.+..+.++..+. +|+.+.|.+.|.+.|.. +....+++...|.+
T Consensus 339 f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 339 F-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred H-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 5 67778888888866655555555544 99999999999999964 34455554443333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=251.34 Aligned_cols=340 Identities=17% Similarity=0.170 Sum_probs=240.8
Q ss_pred hccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcch
Q 008624 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL 196 (559)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 196 (559)
.....+.+|.+.++ +|.+..+.++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++.+++++
T Consensus 19 ~~~~~~~lp~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~ 91 (392)
T PRK10473 19 IDMYLVGLPRIAAD-------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS 91 (392)
T ss_pred HHHHhhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH
Confidence 33444567777666 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHH
Q 008624 197 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 276 (559)
Q Consensus 197 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 276 (559)
+.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+.. +||+.|++.+++.++.
T Consensus 92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~~~~i~ 170 (392)
T PRK10473 92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAAMGILV 170 (392)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887776 9999999988887766
Q ss_pred HHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccC
Q 008624 277 GIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG 355 (559)
Q Consensus 277 ~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (559)
.++. ++++|++.. + ++ +. ....+..++.+++
T Consensus 171 ~~~~~~~~~~~~~~--------~-------------------~~--~~-------------------~~~~~~~~~~~~~ 202 (392)
T PRK10473 171 LLLSLFILKETRPA--------R-------------------AP--AA-------------------SSKPRENSESLLN 202 (392)
T ss_pred HHHHHHHcCCCCCc--------c-------------------cC--Cc-------------------cchHHHHHHHHhC
Confidence 6544 456664310 0 00 00 0000112344555
Q ss_pred CchhHHHHHHHHHHHHHhhCcchhhhchHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhH
Q 008624 356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 434 (559)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 434 (559)
+.++...+...+...... ....+.|.++ ++.|.+. ...+......+++.+++.++.+++.||+++|+.+..+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~ 277 (392)
T PRK10473 203 RFFLSRLVITTLSVTVIL----TFVNTSPVLLMEQMGFSR-GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQV 277 (392)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhCHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 554443333222222221 2334455555 4567766 678888888999999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHh
Q 008624 435 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 514 (559)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~ 514 (559)
+..++.+.+.... ..+.......+...+.+.+... ....+..|.++|+ |.......++..+++.+.+.+
T Consensus 278 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l 346 (392)
T PRK10473 278 LFLAAGITLALSP-----SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWL 346 (392)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHH
Confidence 7777666655432 1222222222222222222221 2223344544443 444445567777788888888
Q ss_pred HHhhhhhHHHHHHH
Q 008624 515 KVFIHFSIKMVSTW 528 (559)
Q Consensus 515 ~~~~g~~~~~~~~~ 528 (559)
.+..|+.......+
T Consensus 347 ~~~~g~~~~~~~~~ 360 (392)
T PRK10473 347 AAVLGISAWNMLIG 360 (392)
T ss_pred HHHhccchhHHHHH
Confidence 88888765444333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-30 Score=250.58 Aligned_cols=341 Identities=32% Similarity=0.363 Sum_probs=277.5
Q ss_pred HHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 008624 108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 187 (559)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 187 (559)
+..+...++.....+..+...++ +|.+..+.+++.+.+.++..++.+++|+++||+|||+.+..+.++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~ 78 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAED-------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGS 78 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 34455666666667777777665 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHH
Q 008624 188 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYG 267 (559)
Q Consensus 188 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 267 (559)
+++.+.++++.++++|++.|++.+...+...+++.|++|+|+|++.+++......+|..+++.+++.+.+.. +||+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~ 157 (352)
T cd06174 79 LLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLFL 157 (352)
T ss_pred HHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877 8999999
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccccccccc
Q 008624 268 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEG 347 (559)
Q Consensus 268 ~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (559)
+.+++.++..+..++++
T Consensus 158 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------- 174 (352)
T cd06174 158 ILAILGLLLALLLLFLL--------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 99888877766554431
Q ss_pred chhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 008624 348 SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR 426 (559)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 426 (559)
+.++...+ ..+...........+.+.+.++. +.+. .+.+.......++.+++.++.+++.||+++|
T Consensus 175 --------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (352)
T cd06174 175 --------RLLLLLAL----AFFLLSFGYYGLLTYLPLYLQEVLGLSA-AEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241 (352)
T ss_pred --------HHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11222222 22223333345667778888775 6665 7889999999999999999999999999999
Q ss_pred h-hhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHH
Q 008624 427 P-LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNA 505 (559)
Q Consensus 427 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 505 (559)
+ .+..+..+..++.+.+... ++.+......++.+.+. ....+....+..|..|+++|++..|+.+....++..
T Consensus 242 ~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (352)
T cd06174 242 RLLLLIGLLLAALGLLLLALA-----PSLALLLVALLLLGFGL-GFAFPALLTLASELAPPEARGTASGLFNTFGSLGGA 315 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHH-hccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9 8888888888877776653 22333333344444433 344556678899999999999999999999999999
Q ss_pred HHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHH
Q 008624 506 IVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 506 i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (559)
+++.+.+.+.+..++...+...+++.++..++.
T Consensus 316 i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 316 LGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 999999999999998888877776666554443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=248.88 Aligned_cols=333 Identities=20% Similarity=0.248 Sum_probs=237.1
Q ss_pred hccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcch
Q 008624 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL 196 (559)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~ 196 (559)
...+.|.+|.+.++ +|++..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+++++
T Consensus 7 ~~~~~p~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (377)
T PRK11102 7 IDMYLPALPVIAAD-------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI 79 (377)
T ss_pred HHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence 34455666766665 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHH
Q 008624 197 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 276 (559)
Q Consensus 197 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 276 (559)
+.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+.. +||+.|++.+++.++.
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988876 9999999988887776
Q ss_pred HHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccC
Q 008624 277 GIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG 355 (559)
Q Consensus 277 ~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (559)
.+.. +++||+++.. ++ ++... ++...++++.+++
T Consensus 159 ~~~~~~~~~~~~~~~---------------------------~~--~~~~~----------------~~~~~~~~~~~~~ 193 (377)
T PRK11102 159 AALVFFFIPETLPKE---------------------------RR--QPFHL----------------RTTIRNFASLFRH 193 (377)
T ss_pred HHHHHHhCCccCccc---------------------------cc--CCCCh----------------HHHHHHHHHHHcC
Confidence 5544 5566643200 00 00000 0001123456666
Q ss_pred CchhHHHHHHHHHHHHHhhCcchhhhchHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhH
Q 008624 356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 434 (559)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 434 (559)
+..+...+...+... +......+.|.++ +..+.++ .+.+.......++.+++.++.+++.||+++|+.+..+..
T Consensus 194 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~ 268 (377)
T PRK11102 194 KRVLGYMLASGFSFA----GMFSFLTAGPFVYIELNGVSP-QNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLW 268 (377)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHcCHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 655544433322222 2223444555555 4467776 788999999999999999999999999999998887776
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHH-HHHHHHHHh
Q 008624 435 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF-GSNAIVTFA 510 (559)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~~ 510 (559)
+..+..+.+...... +...+.......+..+..... .+.......|..| +.++++.++.+.... +|..+++.+
T Consensus 269 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 269 IQFIMGIWLVVSALL-DLGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 544433333222111 112222222222233222222 2223345667766 889999999887654 445455544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=252.11 Aligned_cols=371 Identities=13% Similarity=0.040 Sum_probs=259.0
Q ss_pred hhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhHH-HHHHHHHHH
Q 008624 111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKRE-LIIAAVLYA 184 (559)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-----Grr~~-~~~~~~~~~ 184 (559)
+..+......++.++....+ .|.+..++|.+ +...+.+ ++.+++|+++||+ |||+. ++.+.++.+
T Consensus 22 ~~~gl~~~~~~~~l~~~l~~-------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~ 92 (491)
T PRK11010 22 FASGLPLALTSGTLQAWMTV-------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL 92 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence 44555566666677777666 78999999997 4444444 6899999999999 99985 667777777
Q ss_pred HHHHHHHhh---cchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcc
Q 008624 185 LGALTTAYA---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG 261 (559)
Q Consensus 185 i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~ 261 (559)
++.+++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+...|
T Consensus 93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G 172 (491)
T PRK11010 93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG 172 (491)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 787777775 47888999999999999999999999999999999999999999999999999999999998884339
Q ss_pred hHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccc
Q 008624 262 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT 341 (559)
Q Consensus 262 wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (559)
||..|++.+++.++..+..+++||+++... . ++. .
T Consensus 173 Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~~--------------------------~--~~~--~--------------- 207 (491)
T PRK11010 173 WQGMYWLMAALLIPCIIATLLAPEPTDTIP--------------------------V--PKT--L--------------- 207 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccc--------------------------c--ccc--h---------------
Confidence 999999999888777666666777542000 0 000 0
Q ss_pred ccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHH-HHcCCCCchhHHHHH-HHHHHHHHHHHHHHHHH
Q 008624 342 DEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVS-VVIGVFKLVMTWIAVAK 419 (559)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l 419 (559)
++....++++.++++..+...+..++...... ....+.+.++ ++.|++. .+.+... ....++.+++.+++|++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~----~~~~~~~~~l~~~~G~s~-~~~g~~~~~~g~i~~iiG~ll~G~L 282 (491)
T PRK11010 208 EQAVVAPLRDFFGRNNAWLILLLIVLYKLGDA----FAMSLTTTFLIRGVGFDA-GEVGLVNKTLGLLATIVGALYGGIL 282 (491)
T ss_pred hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001124556666655544433333222221 2333445554 5578877 6777776 45567899999999999
Q ss_pred hhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHH
Q 008624 420 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 499 (559)
Q Consensus 420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 499 (559)
.||+++|+.+.++.++.++..+.+...... ..+.+......++...+.+.... ...++..+..+++.+++..|+.+..
T Consensus 283 ~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~ 360 (491)
T PRK11010 283 MQRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSAL 360 (491)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999887776665555544333222111 12222222222222222222222 2346677888888999999999999
Q ss_pred HHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008624 500 NFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCR 542 (559)
Q Consensus 500 ~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (559)
..+|..+++.+.|.+.|..||...+.+..++.+...++....+
T Consensus 361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877777776666555544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=250.74 Aligned_cols=336 Identities=15% Similarity=0.111 Sum_probs=245.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+|++..++|++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|.+.+...+..
T Consensus 38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 117 (395)
T PRK10054 38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVL 117 (395)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998888888889
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhc
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQ 296 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~ 296 (559)
.++..|.+++++|++++++.....++|.++||.+++.+.+ . +|+..|++.+++.++..++. +++||+++
T Consensus 118 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~~~~~~i~~i~~~~~~~~~~~-------- 187 (395)
T PRK10054 118 KAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLAAICSAFPLVFIQIWVQRSEK-------- 187 (395)
T ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHHHHHHHHHHHHHHHHHhcccc--------
Confidence 9999999999999999999999999999999999998875 4 89999998888777765544 34554321
Q ss_pred CCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCc
Q 008624 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 376 (559)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (559)
+++ + + + ++..+.++.++++.++...+..++..+....
T Consensus 188 -----~~~-----------------~---~---------------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 224 (395)
T PRK10054 188 -----AIA-----------------T---E---------------T-GSVWSPSVLLQDKALLWFTCSGFLASFVSGA-- 224 (395)
T ss_pred -----ccc-----------------c---c---------------h-hhhhhhhhhccCceehHHHHHHHHHHHHHHH--
Confidence 000 0 0 0 0001124567777776665544443333222
Q ss_pred chhhhchHHHHH---HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCch
Q 008624 377 PSVLYYAGPILQ---SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF 453 (559)
Q Consensus 377 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (559)
...+.+.+.. +.+.+. ...+.......+..+......+++.||.++|+.+..+..+..++...+.... ++
T Consensus 225 --~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~ 297 (395)
T PRK10054 225 --FASCISQYVMVVADSDFAE-KVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG----NS 297 (395)
T ss_pred --hhhhHHHHHHHhcccchHH-HHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc----hH
Confidence 2223334432 233333 4556677777677777778889999999999988888777777665554321 22
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHH
Q 008624 454 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILL 533 (559)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~ 533 (559)
.+...+...+.+.+. ....|.....+.+..|++.++++.+..+ ..++|..++|.+.|.+.|..|+...+...+.+..+
T Consensus 298 ~~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~ 375 (395)
T PRK10054 298 LLLWGMSAAVFTVGE-IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA 375 (395)
T ss_pred HHHHHHHHHHHHHHH-HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence 232333333333332 2334455567888889999999988765 67789999999999999999988777665554443
Q ss_pred HH
Q 008624 534 FD 535 (559)
Q Consensus 534 ~~ 535 (559)
+.
T Consensus 376 ~~ 377 (395)
T PRK10054 376 AW 377 (395)
T ss_pred HH
Confidence 33
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=245.82 Aligned_cols=339 Identities=15% Similarity=0.111 Sum_probs=241.2
Q ss_pred hhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc
Q 008624 115 YDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP 194 (559)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 194 (559)
+......+.+|.+.++ +|.++.+.+++.+++.+++.++++++|+++||+|||++++.+.++..++.+++.+++
T Consensus 22 ~~~~~~~p~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 94 (394)
T PRK11652 22 MAQTIYVPAIADMARD-------LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH 94 (394)
T ss_pred HHHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555666766655 999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHH
Q 008624 195 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 274 (559)
Q Consensus 195 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 274 (559)
+++.+++.|++.|++.+...+....++.|.+++++|++++++...+..+|..++|.+++.+.+.. +||+.|++.++..+
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~~~ 173 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGA 173 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHH
Confidence 99999999999999999888888899999999999999999999999999999999999988876 99999999887776
Q ss_pred HHHHH-HhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhc
Q 008624 275 LMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353 (559)
Q Consensus 275 ~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (559)
+..+. .+++||+++... + +.+....+++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~------------~-------------------------------------~~~~~~~~~~~~ 204 (394)
T PRK11652 174 GVTFSMARWMPETRPADA------------R-------------------------------------RTRVLASYRTLL 204 (394)
T ss_pred HHHHHHHHhCCccCcccc------------c-------------------------------------hhHHHHHHHHHH
Confidence 55443 355676532000 0 000011234556
Q ss_pred cCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhh
Q 008624 354 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGG 432 (559)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 432 (559)
+++.++...+........ ......+.+.++++ .+.+. ...++......++.+++..+.+++.||.+++.. ..
T Consensus 205 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~ 277 (394)
T PRK11652 205 SNRRFNCYLLMLIGTLAG----IAVFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QS 277 (394)
T ss_pred cChHHHHHHHHHHHHHHH----HHHHHHhChHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 666655444333222221 12233445556665 67766 677888888888888899999999999873322 22
Q ss_pred hHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhH
Q 008624 433 VCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 512 (559)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g 512 (559)
.....++.+.+...........+......++.+.+.+. ..+....+..|.+| +.++++.++.+....+|+.+++.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~ 355 (394)
T PRK11652 278 VICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA 355 (394)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222111111112233333333334334333 33455566778777 67899999999999999999999988
Q ss_pred HhHHhhh
Q 008624 513 PLKVFIH 519 (559)
Q Consensus 513 ~~~~~~g 519 (559)
.+.+..+
T Consensus 356 ~~~~~~~ 362 (394)
T PRK11652 356 MLPQTGQ 362 (394)
T ss_pred HccCCch
Confidence 8766543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=251.38 Aligned_cols=335 Identities=23% Similarity=0.248 Sum_probs=231.7
Q ss_pred CChhHHHHHHHH-----HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchh--------hHHHHHHHH
Q 008624 140 LSAVQLGLVVSG-----SLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG--------VLLVGRLLY 206 (559)
Q Consensus 140 ~s~~~~g~~~s~-----~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~ 206 (559)
.++.+.+.+.+. ..++..+++++.|+++||+|||++++.+.++..++.++++++++++ .++++|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 445555555443 3334457899999999999999999999999999999999999876 488999999
Q ss_pred hHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhc--------CCCcchHHHHHhhhHHHHHHHH
Q 008624 207 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWRYMYGLSAPLALLMGI 278 (559)
Q Consensus 207 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~--------~~~~~wr~~f~~~~~~~~~~~~ 278 (559)
|++.+...+...+++.|++++++|++..++...+..+|.++++.++..+. +.. +||+.|++.+++.++..+
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW-GWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhcc-chHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876653 234 899999988877766655
Q ss_pred HHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCc-
Q 008624 279 GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN- 357 (559)
Q Consensus 279 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 357 (559)
....++|++++...+ + ++++.+.+.++.++++.
T Consensus 186 ~~~~~~~~~~~~~~~-------------~---------------------------------~~~~~~~~~~~~~~~~~~ 219 (394)
T TIGR00883 186 LRRNLEETPVFEKAQ-------------E---------------------------------KHKKKRGPIRETLTKHRK 219 (394)
T ss_pred HHHhcCCChhHHHHH-------------h---------------------------------ccccccCCHHHHHHhchH
Confidence 555667765421100 0 00011223445555543
Q ss_pred -hhHHHHHHHHHHHHHhhCcchhhhchHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHH
Q 008624 358 -LKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 435 (559)
Q Consensus 358 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 435 (559)
+...... .+...........+.|.++ ++.+.+. ...+.......++.+++.++.+++.||++||+.+.....+
T Consensus 220 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 294 (394)
T TIGR00883 220 PFLLGLGL----VIATTTTFYLITTYLPTYLTQTLGLSA-NSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL 294 (394)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 2222221 1222222334556778887 4466665 6788888888999999999999999999999877655444
Q ss_pred HHHHH-HHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHH-HHHHHHHHHHHHhhHH
Q 008624 436 IALSL-LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVTFAFSP 513 (559)
Q Consensus 436 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~g~ 513 (559)
..+.. ..+..... ..+.+......++.+.+.+. ..+...++..|.+|++.|+++.++.. ....+|..++|.+.|.
T Consensus 295 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~ 371 (394)
T TIGR00883 295 AALLAVPLLMALLD--SGSFTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA 371 (394)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence 43332 22221111 12223333333333333333 33455688899999999999999854 4466788899999999
Q ss_pred hHHhhh-hhHHHHHHHH
Q 008624 514 LKVFIH-FSIKMVSTWF 529 (559)
Q Consensus 514 ~~~~~g-~~~~~~~~~~ 529 (559)
+.+..| +....+...+
T Consensus 372 l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 372 LVAMTGDWYAIGYYLAA 388 (394)
T ss_pred HHHHcCcchhHHHHHHH
Confidence 999988 5554444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=247.94 Aligned_cols=293 Identities=20% Similarity=0.240 Sum_probs=227.2
Q ss_pred ccccchhhHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008624 90 NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF 169 (559)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr 169 (559)
..++..++..+.++.++++..+....+...++.....-..+ | .+....+.+++.++|+++++++.+++|.+.||
T Consensus 34 ~~~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~e----d--l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r 107 (495)
T KOG2533|consen 34 EERKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKE----D--LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR 107 (495)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCcc----c--cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh
Confidence 34455566666667777777777777766555433332222 2 88999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHH
Q 008624 170 LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY 249 (559)
Q Consensus 170 ~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 249 (559)
++-.+.+....+++++..++.....|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.++|.
T Consensus 108 ~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~gg 187 (495)
T KOG2533|consen 108 FPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGG 187 (495)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHH
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcC------CCcchHHHHHhhhHHHHHHHHHH-hccCCchH--HHHHHhhcCCCchhhHHHHHHHHHHhhccCCC
Q 008624 250 FVGSFQIN------AVGGWRYMYGLSAPLALLMGIGM-WSLPPSPR--WLLLRAVQGKGSLQEYKEQAISALGKLRRRPP 320 (559)
Q Consensus 250 ~~~~~l~~------~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (559)
+++..+.+ .. ||||.|++.++++++..++. +++|+.|. |... + +|.+-..++.+..+.
T Consensus 188 liA~g~~~~~~~~~~~-gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~-----------~-~ek~~~~~~~~~~~~ 254 (495)
T KOG2533|consen 188 LIAYGVFKLNGSGGLA-GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLT-----------D-EEKELVVERLRESPS 254 (495)
T ss_pred HHHHHhhhhcCCCCcC-CceeehhHHHHHHHHHHheEEEEecCChhhccccc-----------h-HHHHHHHHHHHhccC
Confidence 99988632 33 99999999999999887755 67898885 1111 0 110000111111110
Q ss_pred CCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHH
Q 008624 321 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADAT 399 (559)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 399 (559)
....++.++..+++.+++|..+.+.+..++.. ...+.+.+|+|.++++ .+++. .++.
T Consensus 255 -----------------~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~----lv~~~~~~~lpl~l~~~~~~s~-~~a~ 312 (495)
T KOG2533|consen 255 -----------------GGIENKFKWKGFKEALKDPGVWPFSLCYFFLK----LVNYGFSYWLPLYLKSNGGYSE-LQAN 312 (495)
T ss_pred -----------------CCcccccCHHHHHHHHhchhHHHHHHHHHHHh----hccccHHHHHHHHHHcCCCcCh-HHhc
Confidence 01111145567888999998888775444443 4455688999999988 44666 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 400 RVSVVIGVFKLVMTWIAVAKVDDL 423 (559)
Q Consensus 400 ~~~~~~~~~~~~~~~~~g~l~d~~ 423 (559)
.+..+..++++++.+++|+++||+
T Consensus 313 ~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 313 LLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred cccchHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999994
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=241.63 Aligned_cols=354 Identities=12% Similarity=0.049 Sum_probs=258.9
Q ss_pred HHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH----HHHHHHHH
Q 008624 109 GGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL----IIAAVLYA 184 (559)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~----~~~~~~~~ 184 (559)
..+...+..+...|.+|.+.++ +|+|..++|++.+++.+...++++++|+++||+|||... ..+..+..
T Consensus 12 ~~~~~~~~~~~~~p~l~~~l~~-------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 12 GFFGYFCAYGIFLPFFPAWLKG-------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3444555566777778877766 899999999999999999999999999999999985433 22222222
Q ss_pred HHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHH
Q 008624 185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 264 (559)
Q Consensus 185 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 264 (559)
+ ..+..+++++.+++.|+++|.+.+...|...++..++ +++|++.+|....+.++|.+++|++++.+.+.. |||.
T Consensus 85 ~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~ 159 (382)
T TIGR00902 85 A--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQN 159 (382)
T ss_pred H--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhH
Confidence 2 3445688999999999999999888899988887765 577899999999999999999999999999987 9999
Q ss_pred HHHhhhHHHHHHHHHHhccCCch-HHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccccc
Q 008624 265 MYGLSAPLALLMGIGMWSLPPSP-RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 343 (559)
Q Consensus 265 ~f~~~~~~~~~~~~~~~~~~e~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (559)
.|++.++..++..+ .+.++|++ +. + +. + .++.
T Consensus 160 ~f~~~~~~~~~~~~-~~~~~~~~~~~-------------~------------------~~--~-------------~~~~ 192 (382)
T TIGR00902 160 ILAILTAGLAFMLI-GFLIKPTIPPK-------------D------------------AI--P-------------EDES 192 (382)
T ss_pred HHHHHHHHHHHHHH-HHHcCCCCCCC-------------c------------------cc--c-------------cccc
Confidence 99887655333333 33333321 10 0 00 0 0000
Q ss_pred ccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 344 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 423 (559)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 423 (559)
+...+.++++|+|.++...+..++..... .....+.+.++++.|.+. ...+.......++.+++.++.+++.||+
T Consensus 193 ~~~~~~~~~l~~~~~~~~l~~~~l~~~~~----~~~~~~~~~~l~~~g~s~-~~~g~l~~~~~~~~i~~~~~~~~l~~r~ 267 (382)
T TIGR00902 193 QGDSAFIALLKNPMNLRFLAAVCLIQGAH----AAYYGFSAIYWQAAGISA-SATGLLWGIGVLAEIIIFAFSNKLFQNC 267 (382)
T ss_pred ccchhHHHHHcChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHhHHHHhhC
Confidence 11223567888888777665554444433 335557788888888887 7888888899999999999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHH-HHHH
Q 008624 424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL-TNFG 502 (559)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~ 502 (559)
+.|+.+.++.+...+....+... ++.+..+...++-+..++.... ....++.+. |++.++++.++.++ ...+
T Consensus 268 g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~ 340 (382)
T TIGR00902 268 SARDLLLISAIACVGRWAIIGAI-----EAFPLIFLLQILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGG 340 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhH-----hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHH
Confidence 99999999988888888777642 3344444455555555554444 344677777 88999999999874 5679
Q ss_pred HHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHH
Q 008624 503 SNAIVTFAFSPLKVFIHFSIKMVSTWFMILLF 534 (559)
Q Consensus 503 g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 534 (559)
|..+++.+.|.+.|..|. ..+...+++.++.
T Consensus 341 g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 341 LIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 999999999999999986 4444444444433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=240.51 Aligned_cols=333 Identities=18% Similarity=0.108 Sum_probs=241.7
Q ss_pred ccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchh
Q 008624 118 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197 (559)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 197 (559)
....+.+|.+.++ +|++.++.|++.+++.+++.++.++.|+++||+|||+++.++.++.+++.+.+ .+++++
T Consensus 17 ~~~~~~lp~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSA-------LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA 88 (355)
T ss_pred ccCcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence 3456677777666 99999999999999999999999999999999999999999999988888887 788999
Q ss_pred hHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCc-chHHHHHhhhHHHHHH
Q 008624 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLM 276 (559)
Q Consensus 198 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-~wr~~f~~~~~~~~~~ 276 (559)
.+++.|++.|++.+...+....++.|+++ ++|++++++++.+.++|..+++.+++.+.+... +||+.|.+.+++.++.
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999988888889999986 689999999999999999999999988876542 4999998776654433
Q ss_pred HHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCC
Q 008624 277 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356 (559)
Q Consensus 277 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (559)
.+ .++|+.++ + .++ +++..+...++.+|++
T Consensus 168 ~~--~~~~~~~~---------~------------------~~~---------------------~~~~~~~~~~~~~~~~ 197 (355)
T TIGR00896 168 LL--AWIPQVRR---------R------------------VAA---------------------NQTTTRLTPVRIWRSP 197 (355)
T ss_pred HH--HHhhhhcc---------c------------------cCC---------------------CCCCCCCCCchhhcCH
Confidence 22 22333211 0 000 0000112345667777
Q ss_pred chhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CchhhhhhhHH
Q 008624 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG-RRPLLIGGVCG 435 (559)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~ 435 (559)
.++...+...+..... .....|.|.++++.+.+. ...+.......++.++++++.|++.||++ ||+.+..+..+
T Consensus 198 ~~~~~~~~~~~~~~~~----~~~~~~lp~~~~~~g~~~-~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~ 272 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLY----YSLIGWLPAILISHGASA-ATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVL 272 (355)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Confidence 6655444333322222 235667888888888776 78889999999999999999999999994 55566666666
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeec-ccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHh
Q 008624 436 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS-EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 514 (559)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~ 514 (559)
.+++.+.+.... .... .. ...+++.+.+ ...+....... +..+++.++...++.+...+++..++|.+.|.+
T Consensus 273 ~~~~~~~~~~~~----~~~~-~~-~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 273 QLVGLCGLLFAP----MHGL-WA-WALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HHHHHHHHHHhh----hhHH-HH-HHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655554321 1111 11 2223333332 22233333443 333457788999999999999999999999999
Q ss_pred HHhhhhh
Q 008624 515 KVFIHFS 521 (559)
Q Consensus 515 ~~~~g~~ 521 (559)
.|..|.+
T Consensus 346 ~~~~g~~ 352 (355)
T TIGR00896 346 HDISGNW 352 (355)
T ss_pred HHHhccc
Confidence 9998743
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-28 Score=238.35 Aligned_cols=357 Identities=15% Similarity=0.069 Sum_probs=230.8
Q ss_pred hhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHH-HHHHHHHHHHHH
Q 008624 111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKREL-IIAAVLYALGAL 188 (559)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-~~~i~~~~~G~l~dr~Grr~~~-~~~~~~~~i~~~ 188 (559)
++.+.......+.++....++ +|++.+++|++.+...+ ++.++.++.|+ +||+|||+.+ +.+.++.+++.+
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~------~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDE------VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence 333444444455555543322 89999999999877655 55555555555 9999999875 556677778888
Q ss_pred HHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCcc--chhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHH
Q 008624 189 TTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR--GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 266 (559)
Q Consensus 189 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f 266 (559)
+.+++++++.+++.+.+.|...+...+...+++.|+.++++| +...++.+.+.++|.++||++++.+.+.. |||..|
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f 176 (393)
T PRK15011 98 LFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMY 176 (393)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHH
Confidence 888999999887766655555567788888988888876655 34457888999999999999999998877 999999
Q ss_pred HhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccccccc
Q 008624 267 GLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKS 345 (559)
Q Consensus 267 ~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (559)
++.++..++..+.. +++||.++- + + + .. . +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~-~---------------~~------------------~--~ 207 (393)
T PRK15011 177 LSAAVAFIVCGVMVWLFLPSMRKE--------L-----P-L---------------AT------------------G--T 207 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCC--------C-----c-c---------------cc------------------c--c
Confidence 99988877766554 456765320 0 0 0 00 0 0
Q ss_pred ccchhhhccCC-chhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 346 EGSFLEVFQGP-NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 423 (559)
Q Consensus 346 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 423 (559)
.....+++ ..+.......+.. ........+.|.++++ .+.+. ...+.+.....++.+++.++.|+++||+
T Consensus 208 ---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~~~~~~-~~~g~~~~~~~~~~i~~~~~~G~l~dr~ 279 (393)
T PRK15011 208 ---LEAPRRNRRDTLLLFVICTLMW----GTNSLYIINMPLFIINELHLPE-KLAGVMMGTAAGLEIPTMLIAGYFAKRL 279 (393)
T ss_pred ---ccccccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000111 1111111111111 1122344567777754 66665 6677777777778888999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHH
Q 008624 424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 503 (559)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 503 (559)
++|+.+..+.....+.+..+.. . ++.+..+....+...+.+.... ....+..|..| +.++++.++.+...++|
T Consensus 280 g~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~l~~~~l~~~~~g~~~~-~~~~~~~~~~p-~~~g~~~~~~~~~~~lg 352 (393)
T PRK15011 280 GKRFLMRVAAVAGVCFYAGMLM-A----HSPAILLGLQLLNAIYIGILGG-IGMLYFQDLMP-GQAGSATTLYTNTSRVG 352 (393)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH-H----hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCC-CCcchHHHHHHHHHHHH
Confidence 9998776655544443332221 1 2233222222222222222111 22355678877 56999999999999999
Q ss_pred HHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHH
Q 008624 504 NAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQ 539 (559)
Q Consensus 504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 539 (559)
..+++.+.|.+.+..|+...+....++.++..++.+
T Consensus 353 ~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 353 WIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877766655555444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-28 Score=238.17 Aligned_cols=350 Identities=13% Similarity=0.060 Sum_probs=238.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR-KRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
+|++..++|++.+++.++..++++++|+++||+|| |+++.++.++..++..+..+.++++.+++.|++.|++.+...+.
T Consensus 33 ~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (418)
T TIGR00889 33 LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIAL 112 (418)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHH
Confidence 89999999999999999999999999999999965 77888889999899888899999999999999999987777776
Q ss_pred HhHHHh--------hcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchH
Q 008624 217 APLYIA--------ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPR 288 (559)
Q Consensus 217 ~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 288 (559)
..++.. |......|.+.+| .+|.++|+++++.+.... .|+. |++.++..++..++.+++||+|+
T Consensus 113 ~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~-~~~~-f~~~~~~~~~~~~~~~~~~e~~~ 184 (418)
T TIGR00889 113 TNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL-SNIQ-LYITAGSSALLGVFALTLPDIPV 184 (418)
T ss_pred HHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-hhHH-HHHHHHHHHHHHHHHhcCCCCCC
Confidence 665532 2233334555555 478888888888773322 4653 55666656555555667787652
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHH
Q 008624 289 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 368 (559)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (559)
-. ++ ++.. .++....+.++++|++.++...+..++.
T Consensus 185 ~~------------~~-----------------~~~~---------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 220 (418)
T TIGR00889 185 AK------------ST-----------------AKMS---------------IKVMLGLDAFILFKNKRMAIFFFFSMLL 220 (418)
T ss_pred Cc------------cc-----------------cccC---------------HHHHhhhhHHHHhcCCCeeeHHHHHHHH
Confidence 00 00 0000 0000011234567777776655554443
Q ss_pred HHHHhhCcchhhhchHHHHHHcCCCC-------chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHH
Q 008624 369 LFQQITGQPSVLYYAGPILQSAGFSA-------AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 441 (559)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 441 (559)
..... ....+.+.++++.+.++ ....+.......+..+++.+..+++.||+|+|+++..+.++.+++..
T Consensus 221 ~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~ 296 (418)
T TIGR00889 221 GAPLQ----ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFG 296 (418)
T ss_pred HhHHH----HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33221 23345566777666442 14568888888899999999999999999999999998888877765
Q ss_pred HHHHHHhhcCch--hHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHH-HHHHHHHHHHHHhhHHhHHhh
Q 008624 442 LLSAYYKILGGF--PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVTFAFSPLKVFI 518 (559)
Q Consensus 442 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~g~~~~~~ 518 (559)
++.... ... .+..+...++.+.+.+ ...+....++.|.+|++.|+++.|+.+ +...+|.+++|.+.|.+.++.
T Consensus 297 l~~~~~---~~~~~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~ 372 (418)
T TIGR00889 297 FFAYGD---PEYFGYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKM 372 (418)
T ss_pred HHHHcC---cchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 554421 011 1222222333333333 233444577889999999999999997 567899999999999999985
Q ss_pred h------hhHHHHHHHHHHHHHHHHHHHhhccccc
Q 008624 519 H------FSIKMVSTWFMILLFDWLVQFCRSCWEQ 547 (559)
Q Consensus 519 g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (559)
| |...+.+.+++.++..++..++.++.++
T Consensus 373 g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 373 FAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4 6666666666666666666555555544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=234.73 Aligned_cols=347 Identities=14% Similarity=0.056 Sum_probs=245.8
Q ss_pred hhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchh----HHHHHHHHHHHHHHHH
Q 008624 114 GYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK----RELIIAAVLYALGALT 189 (559)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr----~~~~~~~~~~~i~~~~ 189 (559)
....+.+.|.+|...++ +|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. ....
T Consensus 17 ~~~~g~~~p~l~~~l~~-------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~ 87 (382)
T PRK11128 17 FFAYGVFLPFWSVWLKG-------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF 87 (382)
T ss_pred HHHHHHHhhhHHHHHHh-------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence 34456667777777766 899999999999999999999999999999999984 3333222222 2233
Q ss_pred HHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhh
Q 008624 190 TAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLS 269 (559)
Q Consensus 190 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~ 269 (559)
+..++++|.+++.|++.|++.+...+...+++.++ .++|+++++......++|.++||++++.+.+.. |||..|++.
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f~~~ 164 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAILWIL 164 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHHHHH
Confidence 44568899999999999999998999888888876 456888999999999999999999999999887 999999887
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccch
Q 008624 270 APLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF 349 (559)
Q Consensus 270 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (559)
++..++..+..++.||.++. ++. +++.++...++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-------------~~~---------------------------------~~~~~~~~~~~ 198 (382)
T PRK11128 165 TAGVASMLLGQLLRPTIMPQ-------------GES---------------------------------RQQESAGWPAW 198 (382)
T ss_pred HHHHHHHHHHHHccCCCCCc-------------ccc---------------------------------ccccccccchH
Confidence 76555544444444442110 000 00000112346
Q ss_pred hhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhh
Q 008624 350 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 429 (559)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 429 (559)
++++|++.++...+..++...... ....+.+.++++.|.+. ...+.......++.++..++.+++.||+++|+.+
T Consensus 199 ~~i~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l 273 (382)
T PRK11128 199 KALLKEPTVWRFLLCVSLLQGSHA----AYYGFSAIYWQAAGYSA-STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLL 273 (382)
T ss_pred HHHHcChhHHHHHHHHHHHHHHhH----hHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 788888887776655444443322 24455677778888876 6788888888899999999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHH-HHHHHHHHHHH
Q 008624 430 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVT 508 (559)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~ 508 (559)
..+.++.+++.+++... ++.+..+...++.+.+.+.. .+....+..+. +++++++..++.+ ....+|..++|
T Consensus 274 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~ 346 (382)
T PRK11128 274 LLSAICGVVRWGLMGST-----TALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMT 346 (382)
T ss_pred HHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888777776655432 33444444444444444433 33444566665 5566788888887 44567778999
Q ss_pred HhhHHhHHhhhhhHHHHHHHHHH
Q 008624 509 FAFSPLKVFIHFSIKMVSTWFMI 531 (559)
Q Consensus 509 ~~~g~~~~~~g~~~~~~~~~~~~ 531 (559)
.+.|.+.|..|.. .+...+++.
T Consensus 347 ~i~G~l~~~~g~~-~~~~~~~~~ 368 (382)
T PRK11128 347 VLSGFLYQHLGAG-VFWVMALVA 368 (382)
T ss_pred HHHHHHHHhccHH-HHHHHHHHH
Confidence 9999999999874 344444333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=238.29 Aligned_cols=337 Identities=18% Similarity=0.156 Sum_probs=228.7
Q ss_pred hhhhccccccccc-cCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh
Q 008624 114 GYDIGATSGATIS-LQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY 192 (559)
Q Consensus 114 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~ 192 (559)
........+..|. +.++ +|++..+.+++.+++.+++.++++++|+++||+|||+.++++.++.+++.+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDD-------LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 (366)
T ss_pred HHHHHHhHHhhhHHHHHH-------hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 3334445556664 4444 9999999999999999999999999999999999999999999999999999999
Q ss_pred hc-chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCC---------Ccch
Q 008624 193 AP-GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---------VGGW 262 (559)
Q Consensus 193 ~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------~~~w 262 (559)
++ +++.+++.|+++|++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+... ..+|
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w 165 (366)
T TIGR00886 87 AVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW 165 (366)
T ss_pred HhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 99 999999999999999664 566788999999999999999999988888887777776655431 2289
Q ss_pred HHHH-HhhhHHHHHHHHH-HhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcc
Q 008624 263 RYMY-GLSAPLALLMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSY 340 (559)
Q Consensus 263 r~~f-~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (559)
|+.| ++.+++.++..++ ..+.+|+|+.. .++.+. +.+. ....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~-----~~~~-~~~~---------------- 209 (366)
T TIGR00886 166 GWAFVIVPAGILLLPALLIFFVGADTPPGK--------------PATGKL-----SFKG-ARWS---------------- 209 (366)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccCCccc--------------ccchhc-----cccc-cccc----------------
Confidence 9999 4445554444333 34556654200 000000 0000 0000
Q ss_pred cccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008624 341 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAK 419 (559)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 419 (559)
.+++.....++.++++.++...+...+..... .....+.+.++++ .+.+. .+.+.......+..++++++.|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l 284 (366)
T TIGR00886 210 VGTGALGDQLKVFRDRHTWILALLYSVTFGSF----LGVSSIFAMFFKDQFGLSK-VTAGAYASLGGLLGSLARPLGGAI 284 (366)
T ss_pred ccchhHHHHHHHHhccchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHhhccchH
Confidence 00000013455677776665554443333322 2355667777765 57666 778888888889999999999999
Q ss_pred hhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHH
Q 008624 420 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG-FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL 498 (559)
Q Consensus 420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 498 (559)
.||+++|+.+..+......+..++..... .. ..+..+....+...+.+.... ..+....+..| +++|++.|+.++
T Consensus 285 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~ 360 (366)
T TIGR00886 285 SDRLGGARKLLMSFLGVAMGAFLVVLGLV--SPLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGA 360 (366)
T ss_pred HHhhccchhHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHH
Confidence 99999988777766655555544443211 11 222222333333333333333 44577778877 799999999988
Q ss_pred HHHHH
Q 008624 499 TNFGS 503 (559)
Q Consensus 499 ~~~~g 503 (559)
.+++|
T Consensus 361 ~~~~g 365 (366)
T TIGR00886 361 IGNLG 365 (366)
T ss_pred hccCC
Confidence 87765
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=230.79 Aligned_cols=366 Identities=17% Similarity=0.067 Sum_probs=251.9
Q ss_pred HhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhH-HHHHHHHHH
Q 008624 110 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKR-ELIIAAVLY 183 (559)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-----Grr~-~~~~~~~~~ 183 (559)
.+..++..+.....+|...++ .|++.+++|++..+... .+..+++|+++||+ |||| +++++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~-------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~ 78 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTV-------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGL 78 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHH
Confidence 355566677777778877777 79999999999777775 69999999999999 8875 788888888
Q ss_pred HHHHHHHHhh---cchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCc
Q 008624 184 ALGALTTAYA---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG 260 (559)
Q Consensus 184 ~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~ 260 (559)
+++..+.++. .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+...
T Consensus 79 ~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~ 158 (402)
T PRK11902 79 AASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVL 158 (402)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 8888887776 3577788888888998999999999999999999999999999999999999999999998887544
Q ss_pred chHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcc
Q 008624 261 GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSY 340 (559)
Q Consensus 261 ~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (559)
|||..|++.+++.++..+..+++||+++... + ++ +..
T Consensus 159 gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~------------~-----------------~~----~~~---------- 195 (402)
T PRK11902 159 GWGNTYLLMAGLMLAGALTTLWAPEPEVPAR------------P-----------------PR----SLG---------- 195 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCccccc------------c-----------------cc----hhH----------
Confidence 9999999988887766665566666432100 0 00 000
Q ss_pred cccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHH-HHHHHHHHHHHHH
Q 008624 341 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIAVAK 419 (559)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l 419 (559)
++....+++++|+|.++..++...+........ .....+.+.++.|.+. ...++.....+ ++.+++.++++++
T Consensus 196 --~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~---~~~~~~~l~~~~G~~~-~~~g~~~~~~~~~~~i~g~~~~g~l 269 (402)
T PRK11902 196 --EAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA---GSLSTTFLIRGAGFSA-GEVGIVNKTLGLAATIVGALAGGTL 269 (402)
T ss_pred --HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH---HHHHHHHHHHhcCCCH-HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 001123567788888777665544443322211 1122233445577776 67777765544 5688999999999
Q ss_pred hhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHH---HHHHhhcccccccceeecccCCcchhhhHHHHH
Q 008624 420 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLL---YVGCYQISFGPISWLMVSEIFPLRTRGRGISLA 496 (559)
Q Consensus 420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 496 (559)
.||+++|+.+..+..+..+..+.+...... .++.+.......+ ..+............++.+.+|.+. .++.
T Consensus 270 ~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~ 344 (402)
T PRK11902 270 MVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALL 344 (402)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHH
Confidence 999999988776666655554433322211 1222322222221 2222222223344466666666444 4555
Q ss_pred HHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHH
Q 008624 497 VLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 497 ~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (559)
+....++..+++.+.|.+.|..|+...+...+++.++..++.
T Consensus 345 ~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 345 SALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 656677777777789999999999988887777666555444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=236.66 Aligned_cols=349 Identities=16% Similarity=0.069 Sum_probs=221.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH---hhcc-----hhhHHHHHHHHhHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAPG-----LGVLLVGRLLYGLG 209 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~---~~~~-----~~~l~~~r~l~G~~ 209 (559)
+|++..++|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++. +...++++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999887666655443221 1111 11122233333333
Q ss_pred HHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHH
Q 008624 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRW 289 (559)
Q Consensus 210 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 289 (559)
.....+....+..+. .+++++.++......++|..++|++++.+.+. +|++.|++.++++++..++.++++++++.
T Consensus 121 ~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 196 (420)
T PRK09528 121 FLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGSALILLVLLFFAKPDAPS 196 (420)
T ss_pred hccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHHHHHHHHHHhcccccccc
Confidence 222233333333222 34578888999999999999999999988763 89999999888887766666554332210
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHH
Q 008624 290 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 369 (559)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (559)
+ .+ .. +++. ..+++...+..++.+|++.++...+......
T Consensus 197 -------------~-~~-~~-------~~~~------------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~ 236 (420)
T PRK09528 197 -------------T-AK-VA-------NALG------------------ANASAVSLKDALALLKLPKFWFLVLYVIGVA 236 (420)
T ss_pred -------------h-hh-hc-------cchh------------------cccccccHHHHHHHccCCCeEeehHHHHHHH
Confidence 0 00 00 0000 0000011122445677777665444332222
Q ss_pred HHHhhCcchhhhchHHHHHH----cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHH
Q 008624 370 FQQITGQPSVLYYAGPILQS----AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 445 (559)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 445 (559)
..... ...+.|.++.+ .+.+. ...+.+.....++..++.++.|++.||+++|+.+..+.++.+++.+++.+
T Consensus 237 ~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 237 CFYDV----FDQQFPNFFASFFATPEQGT-RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHHH----HHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh
Confidence 22111 22233444332 23333 56788888888888999999999999999999988888877777666554
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHH-HHHHHHHHHHHHHHhhHHhHHhhhhhHHH
Q 008624 446 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL-AVLTNFGSNAIVTFAFSPLKVFIHFSIKM 524 (559)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~~~g~~~~~~g~~~~~ 524 (559)
. .+.+..+....+.+..... ..+....+..|.+|++.+++..++ .++...+|.++++.+.|.+.|..|+...+
T Consensus 312 ~-----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f 385 (420)
T PRK09528 312 A-----TGPLEVSILKLLHAFEVPF-LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTY 385 (420)
T ss_pred c-----ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Confidence 2 2334333333333332222 222334677788898988887765 56778899999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008624 525 VSTWFMILLFDWLVQFC 541 (559)
Q Consensus 525 ~~~~~~~~~~~~~~~~~ 541 (559)
...+++.++..++....
T Consensus 386 ~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 386 LILGGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87666665555444433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=227.67 Aligned_cols=345 Identities=16% Similarity=0.110 Sum_probs=253.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
.+-.++++|++.+.+.+...+.+++.|.+.||+|+|..+++|++++..+++++++.++++.++++|.+||+|.+...+.+
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCCCc-cchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhc
Q 008624 218 PLYIAETCPSQI-RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 296 (559)
Q Consensus 218 ~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~ 296 (559)
.++++|.+|+++ |++++|+...+.++|.++||.+||.+.+.. |.+.+|++.++++++...+.+++-|..+
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-------- 251 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIEPTE-------- 251 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeCccc--------
Confidence 999999998765 799999999999999999999999999988 9999999999999998887776544211
Q ss_pred CCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCc
Q 008624 297 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 376 (559)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (559)
.+.+...+..++++++++|..................
T Consensus 252 -----------------------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~laf-- 288 (464)
T KOG3764|consen 252 -----------------------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAF-- 288 (464)
T ss_pred -----------------------------------------cCccccccCccHHHHHhCchHhhhhcchhhccchHHH--
Confidence 0001233445678889988766544333222221111
Q ss_pred chhhhchHH-HHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh--hhHHHHHHHHHHHHHHhhcCch
Q 008624 377 PSVLYYAGP-ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG--GVCGIALSLLLLSAYYKILGGF 453 (559)
Q Consensus 377 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 453 (559)
.---++. ..++.. .+.-..|.......+...++..+.|.+.||++..+.+.. +.+..++++....+.... ..
T Consensus 289 --LePtlslwm~e~m~-~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~--~~ 363 (464)
T KOG3764|consen 289 --LEPTLSLWMLETMF-TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI--AQ 363 (464)
T ss_pred --hCcccHHHHHHhcc-CCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH--HH
Confidence 1111223 234444 443478888899999999999999999999995444333 333333333222222110 11
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeecccCCcc---hhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHH
Q 008624 454 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFM 530 (559)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~ 530 (559)
.+.....+++.++.......|.. .+..+.-..+ ..|...++......+|.++||.+.|.+.+..|+.|...+.++.
T Consensus 364 L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~ 442 (464)
T KOG3764|consen 364 LWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGIL 442 (464)
T ss_pred HhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHH
Confidence 22222333333333333444444 3333433334 6789999999999999999999999999999999988877766
Q ss_pred HHHHHHHHHH
Q 008624 531 ILLFDWLVQF 540 (559)
Q Consensus 531 ~~~~~~~~~~ 540 (559)
.+.-.-+...
T Consensus 443 n~iyapvl~l 452 (464)
T KOG3764|consen 443 NLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHH
Confidence 6554444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=214.89 Aligned_cols=354 Identities=19% Similarity=0.187 Sum_probs=276.8
Q ss_pred HHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 008624 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 182 (559)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 182 (559)
++.+....++.|+.....++.+|.+.+- |+++..+.+++..+++.++.+.+++.|++.+|+|+|+.+++|+.+
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~~-------f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l 87 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKEV-------FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLL 87 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHH-------hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHH
Confidence 3344555688899888989999998877 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---hhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCC-
Q 008624 183 YALGALTTA---YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA- 258 (559)
Q Consensus 183 ~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~- 258 (559)
+++++.+.. ...+|..++++-++.|.|.+...+.++.++....++++..+.+.+.+...++|.++||++++.++..
T Consensus 88 ~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~ 167 (422)
T COG0738 88 YAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG 167 (422)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 999999984 5678999999999999999999999999999999998889999999999999999999999988762
Q ss_pred -----------------CcchHHHHHhhhHHHHHHHHHHhc--cCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCC
Q 008624 259 -----------------VGGWRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP 319 (559)
Q Consensus 259 -----------------~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (559)
...|+++|...+...++..+.... .|+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~------------------------------- 216 (422)
T COG0738 168 VALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV------------------------------- 216 (422)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-------------------------------
Confidence 125888888888877777666544 333211
Q ss_pred CCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhH
Q 008624 320 PGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADA 398 (559)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 398 (559)
..+...+.......++++++.++...+..+++...+.. ...|++.++.+ .+.+. .++
T Consensus 217 -----------------~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva----~gsfl~~y~~~~~g~~~-~~a 274 (422)
T COG0738 217 -----------------AAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVA----IGSFLVSYLEELLGLNE-QQA 274 (422)
T ss_pred -----------------ccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHH----HHHHHHHHHHhcCCccH-HHH
Confidence 00000111111567889999888888777776666654 77788888888 45555 889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccce
Q 008624 399 TRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL 478 (559)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (559)
....+....+.++|++++.++..|+...+.+....++..+.++...+. .....+....+++.+.+.. .|..++
T Consensus 275 a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~------~g~v~~~~l~~ig~F~sim-fPTIfs 347 (422)
T COG0738 275 AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI------GGVVALYALFLIGLFNSIM-FPTIFS 347 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh------cChHHHHHHHHHHHHhHHH-HHHHHH
Confidence 999999999999999999999999999888877666555555555442 2244444444555555444 456668
Q ss_pred eecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHH
Q 008624 479 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMV 525 (559)
Q Consensus 479 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~ 525 (559)
...+..| ++...+ |.......+|+++.|.+.|++.|..|....+.
T Consensus 348 lal~~l~-~~ts~~-s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 348 LALKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred HHHhccC-cccccc-ceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 8888888 433333 33444567899999999999999999877666
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=241.61 Aligned_cols=388 Identities=18% Similarity=0.153 Sum_probs=273.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHhHHHHhhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGR-LLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r-~l~G~~~g~~~~~ 216 (559)
++.+.++++|+.++....+.+..|+.+.+.||||.|.+.++|.++..++.++.++++++|++++.. ++.|+|.|..+..
T Consensus 76 f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~p 155 (509)
T KOG2504|consen 76 FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLP 155 (509)
T ss_pred hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999886 8899999999999
Q ss_pred HhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCC-chHHHHHHhh
Q 008624 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP-SPRWLLLRAV 295 (559)
Q Consensus 217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e-~p~~~~~~~~ 295 (559)
...++..+| +|+|+.+.|+...+.++|.++-|.+...+.+.+ |||+.+++.+.+.+-..+....+.+ ++.....+ .
T Consensus 156 aiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~-G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~-~ 232 (509)
T KOG2504|consen 156 AVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY-GWRGALLIFGGISLNVLVAGALLRPLSPPKKPNE-E 232 (509)
T ss_pred hhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchh-h
Confidence 999999887 577999999999999999999999999999998 9999999988888766665544433 32210000 0
Q ss_pred cCCCchhhHHHHHHHHHHhhccCCCC-CcccHH---HHHHHHHHhhhcccc-cccccch---hhhccCCchhHHHHHHHH
Q 008624 296 QGKGSLQEYKEQAISALGKLRRRPPG-DKLSER---QIEDTLVSLKSSYTD-EKSEGSF---LEVFQGPNLKAFIIGGGL 367 (559)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 367 (559)
+.. +......+......+..... +..... .......+.++.... ..+.... .++++++.+..+.+...+
T Consensus 233 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~ 309 (509)
T KOG2504|consen 233 KDL---RNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLF 309 (509)
T ss_pred hhh---ccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHH
Confidence 000 00000000000000000000 000000 000001111111110 1111112 578888777766655555
Q ss_pred HHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--hhhhhhhHHHHHHHHHHHH
Q 008624 368 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR--PLLIGGVCGIALSLLLLSA 445 (559)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~ 445 (559)
..+.. .....++|.+.+..+++. .++..+..+.++..++++++.|++.|+...+ .+..++.++.+++.+.+..
T Consensus 310 ~~~g~----~~p~~~l~~~~~~~g~~~-~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~ 384 (509)
T KOG2504|consen 310 AYLGF----NVPFVYLPSYAKSLGLSS-NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF 384 (509)
T ss_pred HHHHH----HHHHHHHHHHHhhcCCCh-hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 55443 447778888899899887 8899999999999999999999999998843 3444455555555544443
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh-hhHHH
Q 008624 446 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH-FSIKM 524 (559)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~ 524 (559)
...+..+...+++.+.....+.......+.|+.+.++-..+.|+...+..++..++|.+.|.+.|..| |...+
T Consensus 385 ------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f 458 (509)
T KOG2504|consen 385 ------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAF 458 (509)
T ss_pred ------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeeh
Confidence 22334444444444444445555555678899999999999999999999999999999999999998 66677
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008624 525 VSTWFMILLFDWLVQFCR 542 (559)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~ 542 (559)
.+.+++.++...+.++..
T Consensus 459 ~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 459 YFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhcChHHHHHHHHHHHhH
Confidence 777766666665554443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=260.72 Aligned_cols=338 Identities=14% Similarity=0.008 Sum_probs=237.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH---HHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHh
Q 008624 142 AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII---AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 218 (559)
Q Consensus 142 ~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 218 (559)
....++..+++.+.+.++++++|+++||+|||+++.. +.++.++..+.+...+++++++++|+++|++.+...|+..
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 3567889999999999999999999999999997633 2233333333334458999999999999999999999999
Q ss_pred HHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCC
Q 008624 219 LYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGK 298 (559)
Q Consensus 219 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~ 298 (559)
+++.+++++++|++++++.+++.++|.++||++++++.... +|++.|++.++..++.+++.+++++++.- +
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 201 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLGWLASLFIPKTGNA--------A 201 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhCCCCCCC--------C
Confidence 99999999999999999999999999999999999999887 99999966666666655566667664310 0
Q ss_pred CchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcch
Q 008624 299 GSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPS 378 (559)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (559)
. .......... .....++.+.+++.++...+..++..+... .
T Consensus 202 ~---------------------~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 243 (1140)
T PRK06814 202 P---------------------DLKIDRNIIR-------------STITLLKYAKADKRIWLAILGISWFWLVGA----V 243 (1140)
T ss_pred C---------------------CCeeccchHH-------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHH----H
Confidence 0 0000000000 001135566777777776665555444332 3
Q ss_pred hhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHH----------
Q 008624 379 VLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY---------- 447 (559)
Q Consensus 379 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 447 (559)
+..+.|.++++ .+.+. ...+++.+..+++.+++.++.|++.++..+++.+..+.++.+++.+.+.+..
T Consensus 244 ~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (1140)
T PRK06814 244 VLSQLPLLAKETLGGDE-NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQL 322 (1140)
T ss_pred HHHHhHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccc
Confidence 55577888766 56665 7899999999999999999999999887776666555555555444333210
Q ss_pred -----hhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh-hhhh
Q 008624 448 -----KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF-IHFS 521 (559)
Q Consensus 448 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~-~g~~ 521 (559)
.......+..++..++++.+.+. ..+...+++.+..|++.+|+++|+.+++..++..+++.+.+.+.+. .++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~ 401 (1140)
T PRK06814 323 KSILVFLSKRHGWRILIDLFGLAAAGGL-YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIP 401 (1140)
T ss_pred cchhhhhcccccHHHHHHHHHHHHHHHH-hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 00012233333333444443333 3334558888999999999999999999999999999999998754 3444
Q ss_pred HHHHHHH
Q 008624 522 IKMVSTW 528 (559)
Q Consensus 522 ~~~~~~~ 528 (559)
..+.+.+
T Consensus 402 ~~~~~~~ 408 (1140)
T PRK06814 402 WIILFIA 408 (1140)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=229.89 Aligned_cols=346 Identities=15% Similarity=0.070 Sum_probs=233.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---Hhh-----cchhhHHHHHHHHhHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYA-----PGLGVLLVGRLLYGLG 209 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-----~~~~~l~~~r~l~G~~ 209 (559)
+|.+..+.|++.+++.++..++++++|+++||+|||+.++.+....+++.... .+. +.+..+++.|++.|++
T Consensus 33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 112 (396)
T TIGR00882 33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFV 112 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999988777665544332 122 1234456778889998
Q ss_pred HHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc-cCCchH
Q 008624 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-LPPSPR 288 (559)
Q Consensus 210 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~ 288 (559)
.+...+....++.|.. ++++..++......++|.++||.+++.+.+ . +||++|++.+++.++..++.+. .+|+|+
T Consensus 113 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (396)
T TIGR00882 113 FSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-I-DPQIVFWLGSGFALILMLLLMFAKPKAPS 188 (396)
T ss_pred hccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-c-CchHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 8888888888877753 334567788888889999999999998765 4 8999999998888877665544 333321
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHH
Q 008624 289 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 368 (559)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (559)
. ++..+. .+ ..+++++.++.++++|++.++...+.....
T Consensus 189 ~----------------~~~~~~----~~---------------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 227 (396)
T TIGR00882 189 S----------------ATVANA----LG---------------------ANASAFSLKLALELFRQRKFWMFVLYVVGV 227 (396)
T ss_pred h----------------hhhhcc----cc---------------------cccCCCCHHHHHHHHcCCcHHHHHHHHHHH
Confidence 0 000000 00 000111123456778888766554433222
Q ss_pred HHHHhhCcchhhhchHHHHHHc----CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHH
Q 008624 369 LFQQITGQPSVLYYAGPILQSA----GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 444 (559)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 444 (559)
.... .....+.+.++++. +.+. ...+.......+...++.+..+++.||+++|+.+.++..+.++...+..
T Consensus 228 ~~~~----~~~~~~~~~y~~~~~~~~~~~~-~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~ 302 (396)
T TIGR00882 228 ACVY----DVFDQQFANFFTSFFATPQQGT-RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS 302 (396)
T ss_pred HHHH----HHHHHHHHHHHHHhccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 2211 12333445555443 3333 4567778888888888999999999999999998888777777665544
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHH-HHHHHHHHHHHHHHhhHHhHHhhhhhHH
Q 008624 445 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL-AVLTNFGSNAIVTFAFSPLKVFIHFSIK 523 (559)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~~~g~~~~~~g~~~~ 523 (559)
.. .+.+..+...++.+.+... .......+..+..|++.++++.+. .+....+|+++++.+.|.+.|..|+...
T Consensus 303 ~~-----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~ 376 (396)
T TIGR00882 303 FA-----TTALEVVILKMLHAFEVPF-LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGA 376 (396)
T ss_pred hc-----CChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 31 2333333333333322221 111233455666777888887766 5678999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHH
Q 008624 524 MVSTWFMILLFDWLVQ 539 (559)
Q Consensus 524 ~~~~~~~~~~~~~~~~ 539 (559)
+...+++.++..++..
T Consensus 377 f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 377 YLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777666555443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=254.10 Aligned_cols=325 Identities=16% Similarity=0.016 Sum_probs=230.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---HhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 141 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 141 s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++. ..+++++.++++|+++|++.+...+..
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 45668999999999999999999999999999999999887766655544 345789999999999999999999999
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCC--------CcchHHHHHhhhHHH-HHHHHHHhccCCchH
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA--------VGGWRYMYGLSAPLA-LLMGIGMWSLPPSPR 288 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~~~wr~~f~~~~~~~-~~~~~~~~~~~e~p~ 288 (559)
.+++.|++|+++|++++++...+..+|.++|+++++++... ..+|++.+.+.++.. ++.+++.+.+||+|.
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 99999999999999999999999999999999999998765 324555554444333 333444456777653
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHH
Q 008624 289 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 368 (559)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (559)
....+ . +...... .......++.+++++.++..++...+.
T Consensus 205 ~~~~~---------~---------------~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (1146)
T PRK08633 205 AAPEV---------F---------------DKKKYLF----------------PKLLWRNLKLLRSDRVLWLAIIGLSYF 244 (1146)
T ss_pred CCccc---------c---------------ccccccc----------------HHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 11000 0 0000000 000111245566777666655544444
Q ss_pred HHHHhhCcchhhhchHHHHH-HcCCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHH
Q 008624 369 LFQQITGQPSVLYYAGPILQ-SAGFSAAA-DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 446 (559)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (559)
.+... ....+.|.++. ..+.+. . ..+++....+++.+++.++.+++.||+++++.+.++.++.+++.+++...
T Consensus 245 ~~~~~----~~~~~~~~~~~~~~g~s~-~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1146)
T PRK08633 245 WFISQ----LAQANFPAYAKEVLGLDN-TFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA 319 (1146)
T ss_pred HHHHH----HHHHhhHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh
Confidence 33322 24445566664 467776 5 78899999999999999999999999999888877777777666655542
Q ss_pred HhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH
Q 008624 447 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV 516 (559)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 516 (559)
.+.+..++..++++.+.+... +...+++.+..|++.||+++|+.+++.++|.++++.+.+.+..
T Consensus 320 -----~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 320 -----PSLASVLVLFFLFGFSAGLFI-VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred -----hhHHHHHHHHHHHHHHHHHhh-HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333344443333333 3445778888999999999999999999998877776655443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=222.89 Aligned_cols=378 Identities=20% Similarity=0.179 Sum_probs=273.9
Q ss_pred ccchhhHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 92 EAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG 171 (559)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 171 (559)
++...+.+|..-++..++..+......++ ..+ ..-|+..++++.++..+...+.++++|.++||++
T Consensus 8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wl-------v~~-------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~d 73 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNLGDWMQTVALAWL-------VTQ-------LTGSPLMVALVQAASTLPILLLSLFAGALADRFD 73 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44556666776666666666655554442 212 4458999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-----hcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHH
Q 008624 172 RKRELIIAAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL 246 (559)
Q Consensus 172 rr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 246 (559)
||++++.+.++.++..++.++ ..+.+.+++.-++.|++.+...|...+++.|..|+++...++++.+...++..+
T Consensus 74 rrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~ 153 (524)
T PF05977_consen 74 RRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARI 153 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHh
Confidence 999999998887766555443 247888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccH
Q 008624 247 LGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 326 (559)
Q Consensus 247 ~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (559)
+||.+||.++... |-.+.|++.++..++.++.....++.++ . +....
T Consensus 154 iGPalgG~Lva~~-G~~~~f~inalsfl~~i~~l~~~~~~~~--------~------------------------~~~~~ 200 (524)
T PF05977_consen 154 IGPALGGILVAFF-GAAAAFLINALSFLISILALLRWKPPPP--------P------------------------SSLPR 200 (524)
T ss_pred ccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccc--------c------------------------cccch
Confidence 9999999988877 8888999888776665554444432111 0 00000
Q ss_pred HHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHH
Q 008624 327 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVI 405 (559)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 405 (559)
+.. .+.-+..++-+.++|.++..++...+..+.. ..+...+|.+.++ .+.++ ...|++.+..
T Consensus 201 ---e~~---------~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~----~a~~aLlPl~a~~~l~~~a-~~yGll~a~~ 263 (524)
T PF05977_consen 201 ---ERF---------FSALREGLRYVRSSPPLRSVLLRSFLFNLFA----SAVWALLPLFARDVLGGGA-SGYGLLLAAF 263 (524)
T ss_pred ---hhh---------hhhHHHHHHHHhcchHHHHHHHHHHHHHHhh----hHHHHhhhHHHHHHhCCcH-HHHHHHHHHH
Confidence 000 0001112334444555554443333322221 1233456777654 56665 7899999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCC
Q 008624 406 GVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP 485 (559)
Q Consensus 406 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 485 (559)
++++++|+++.+++.+|+++++++..+.++.+++++.+++. .+.+.....+++.+.+... ......+...+..|
T Consensus 264 gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-----~~~~~~~~~l~l~G~~~~~-~~~~~~t~~Q~~~P 337 (524)
T PF05977_consen 264 GVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-----PSFWLALIALFLAGAAWII-ANSSLNTLVQLSVP 337 (524)
T ss_pred HHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 99999999999999999999888888888888777776653 3344444444444444443 33344577888899
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHH
Q 008624 486 LRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQ 539 (559)
Q Consensus 486 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 539 (559)
++.||+++++.++....+..+|..+.|.+.+..|....+...+++.++..++..
T Consensus 338 ~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 338 DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887766655554444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=222.83 Aligned_cols=392 Identities=16% Similarity=0.143 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 008624 100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 179 (559)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~ 179 (559)
+..+...++......+.....+..++.+..| +|- .....|+.+.+.++.+++.++.|+++|.||||.+++.+
T Consensus 43 i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-------iG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g 114 (599)
T PF06609_consen 43 IASFAAFSLAVIAAYFVLVLPASILPYINAD-------IGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIG 114 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-------cCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Confidence 3333333443333333343444455555555 774 46778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC
Q 008624 180 AVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 259 (559)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 259 (559)
.++..+|+++++.++|...++++..+.|+|.|.... ....++|..|.|.|+...++......+...+++.++..+..+.
T Consensus 115 ~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~ 193 (599)
T PF06609_consen 115 SLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS 193 (599)
T ss_pred HHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC
Confidence 999999999999999999999999999999887664 5666899999999998888777666666667888887766655
Q ss_pred cchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHh----------------h--ccCCCC
Q 008624 260 GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGK----------------L--RRRPPG 321 (559)
Q Consensus 260 ~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~--~~~~~~ 321 (559)
+|||.|++.++...+.+++.+++..+|++...+ ++. ..+.++ .+.++. + .+....
T Consensus 194 -~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~---~~~--~s~~~~-l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~ 266 (599)
T PF06609_consen 194 -GWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLH---GRK--LSKREQ-LKELDWIGIFLFIAGLALFLLGLSWGGYPYY 266 (599)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHhCCCchhhhc---ccc--CcHHHH-HHHhhHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 999999999888777666543322223221111 110 001111 111111 1 111122
Q ss_pred CcccHHHHHHHHHHh------hh-c-ccccccccchhhhccCCc-hhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cC
Q 008624 322 DKLSERQIEDTLVSL------KS-S-YTDEKSEGSFLEVFQGPN-LKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AG 391 (559)
Q Consensus 322 ~~~~~~~~~~~~~~~------~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 391 (559)
++.+...+....... .- + ....+++.-..+++|+++ +...++..++....++ ....+.|..... ++
T Consensus 267 ~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~----s~~~l~p~~~~~vf~ 342 (599)
T PF06609_consen 267 PWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFF----SVNILWPQQVVNVFG 342 (599)
T ss_pred CCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcc
Confidence 333322222111110 00 0 011123334567888743 3222222222222222 233333443333 33
Q ss_pred CCCc--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh-hhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Q 008624 392 FSAA--ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL-LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCY 468 (559)
Q Consensus 392 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (559)
.+.. ...++...+.+++.+++.++.|.+..+++|-|. ++++.+++.+++.+++.... ++....+...++.+.+.
T Consensus 343 ~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~---~n~~~~i~~~~l~g~gi 419 (599)
T PF06609_consen 343 SDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP---DNKNAAIAFLVLAGFGI 419 (599)
T ss_pred CCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC---CCcchHHHHHHHHHHhH
Confidence 3221 246788888889999999999999998887554 45666666655555554332 22222233333333333
Q ss_pred hcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH
Q 008624 469 QISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515 (559)
Q Consensus 469 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 515 (559)
+....+. ...+.-..|++..|++.|+..+++.+|+.++..++..+.
T Consensus 420 G~~~~~~-~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 420 GGILVPA-IVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHH-HHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333 355556679999999999999999999999998886654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=196.37 Aligned_cols=344 Identities=21% Similarity=0.168 Sum_probs=267.3
Q ss_pred hhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 008624 111 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT 190 (559)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~ 190 (559)
+-.--..+.+.|.++.+.++ +|+|.+..|+++++..+..++.+++..+++.|+|.++.+..++++.+++.++-
T Consensus 22 ~NLR~~itsvgPLL~~Ir~~-------~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR 94 (395)
T COG2807 22 FNLRPAITSVGPLLDEIRQD-------LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIR 94 (395)
T ss_pred hccchhhhhhhhhHHHHHHH-------hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33334455667777777666 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhh
Q 008624 191 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA 270 (559)
Q Consensus 191 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~ 270 (559)
... +.+.++.+-.+.|.|.+......+.++.+.||+| -+..+|+|....++|..+++.+...+.++..+||....+-+
T Consensus 95 ~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WA 172 (395)
T COG2807 95 SLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWA 172 (395)
T ss_pred hcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHH
Confidence 876 7888999999999999999999999999999754 79999999999999999999999988887768999999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchh
Q 008624 271 PLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 350 (559)
Q Consensus 271 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (559)
.++++.++.++.-. .|.. ......+..+..
T Consensus 173 l~allAl~~WlPq~--~r~~------------------------------------------------~~~~~~~~~~~~ 202 (395)
T COG2807 173 LLALLALLIWLPQA--LREQ------------------------------------------------AASIATKLVSVR 202 (395)
T ss_pred HHHHHHHHHHhhhc--cccc------------------------------------------------cccccccccccc
Confidence 99888776654321 1100 001122223345
Q ss_pred hhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCchhh
Q 008624 351 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLL 429 (559)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~ 429 (559)
.++|+|.-|.+.+.+.+..+.+ +....|+|.++.+.|++. .++|.+.....+..++.++....+.+|. ++|+..
T Consensus 203 ~vw~~~~aW~vtLfmGlqS~~~----Y~~~~WLP~ili~~G~sa-~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~ 277 (395)
T COG2807 203 KVWRSPLAWQVTLFMGLQSLLY----YIVIGWLPAILIDRGLSA-AEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLV 277 (395)
T ss_pred ccccCchhHHHHHHHHhhHHHH----HHHHHHHHHHHHHcCCCH-HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 6889988888776666555554 458899999999999998 8999999999999999999999999965 456666
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceee-cccCCcchhhhHHHHHHHHHHHHHHHHH
Q 008624 430 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMV-SEIFPLRTRGRGISLAVLTNFGSNAIVT 508 (559)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 508 (559)
+....++.++.+.+.+... ...++. .++++.+.+..+ |+..+.+ .+...++..+.-.|+.+.++++-...+|
T Consensus 278 ~~~~~~~l~G~~G~~~~P~---~~~~lw---~~llG~G~G~~F-~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP 350 (395)
T COG2807 278 VLALLLMLVGLVGLLLAPG---QLPILW---ALLLGLGQGGAF-PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGP 350 (395)
T ss_pred HHHHHHHHHHHHHHHHhhh---hHHHHH---HHHHhCccchHH-HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhh
Confidence 6667777777776664321 222222 233333333333 3333333 3344567888899999999999999999
Q ss_pred HhhHHhHHhhhhhHHHH
Q 008624 509 FAFSPLKVFIHFSIKMV 525 (559)
Q Consensus 509 ~~~g~~~~~~g~~~~~~ 525 (559)
.++|.+.|..|.....+
T Consensus 351 ~l~G~lhDa~gsw~~~~ 367 (395)
T COG2807 351 WLFGFLHDATGSWSAPL 367 (395)
T ss_pred hhHhHHHHhcCChHHHH
Confidence 99999999998554443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=224.52 Aligned_cols=363 Identities=12% Similarity=0.071 Sum_probs=222.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhcchhh-HHHHHHHHhHHHHhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGV-LLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~ 215 (559)
+|++.++.+++.+.+.....+..+++|+++|| +|||++++++.+++++++++++++.+... ++++|+++|+|.|...+
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~ 124 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA 124 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence 89999999999999999999999999999999 99999999999999999999999877554 55899999999999999
Q ss_pred hHhHHHhhcCCCC--ccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHH
Q 008624 216 GAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 293 (559)
Q Consensus 216 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 293 (559)
...+++.|.+|++ +|++++++++.+.++|.++||.+++++.+.. |||+.|++.++..++..+..++.++..+ .+
T Consensus 125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i~~~~~~~~~~~~~~~~~---~~ 200 (489)
T PRK10207 125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGAGLIIALLVYFACRGMVK---DI 200 (489)
T ss_pred CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHcchhhc---cc
Confidence 9999999999877 4578999999999999999999999999888 9999999865543333333333332111 00
Q ss_pred hhcCCCchhhHHHHHH---------HHHHhhccCCCCCcccHHHHHH--HHHHhhhcccccccccchhhhccCCchhHHH
Q 008624 294 AVQGKGSLQEYKEQAI---------SALGKLRRRPPGDKLSERQIED--TLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI 362 (559)
Q Consensus 294 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (559)
+.+.+....+...... -........ .......... ......--.++.+. .+.+|++.+....
T Consensus 201 ~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~f~~~~~~~----~~~~r~r~~~~~~ 273 (489)
T PRK10207 201 GSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHN---VEVANLVLIVLSIVVTIIFFREAFKL----DKTGRNKMFVAFV 273 (489)
T ss_pred CCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 0000000000000000 000000000 0000000000 00000000000000 1344444333222
Q ss_pred HHHHHHHHHHhhCcchhhhchHHHHHH-cCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh-------hhh
Q 008624 363 IGGGLVLFQQITGQPSVLYYAGPILQS-AGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL-------LIG 431 (559)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-------~~~ 431 (559)
+. +.....+..+.......+.+.++ ...+ -......+.....+..++..++.+++.||+++|+. +.+
T Consensus 274 l~--~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~ 351 (489)
T PRK10207 274 LM--LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTL 351 (489)
T ss_pred HH--HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 11 11111111112222333444442 2211 11234555556666677788888999999998863 667
Q ss_pred hhHHHHHHHHHHHHHH---h-hcCc-hhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHH
Q 008624 432 GVCGIALSLLLLSAYY---K-ILGG-FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 506 (559)
Q Consensus 432 ~~~~~~~~~~~~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 506 (559)
++++.+++++.+.... . .... +.++.+...++.+ .......+....++.+..|++.++.++|+.+...++|+.+
T Consensus 352 G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g-~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~l 430 (489)
T PRK10207 352 GMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS-LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLL 430 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH-HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777765443211 1 1111 2333333334443 4444455566678888889999999999999999999999
Q ss_pred HHHhhHHh
Q 008624 507 VTFAFSPL 514 (559)
Q Consensus 507 ~~~~~g~~ 514 (559)
+..+....
T Consensus 431 g~~l~~~~ 438 (489)
T PRK10207 431 GGYVATFT 438 (489)
T ss_pred HHHHHHHh
Confidence 98877544
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=210.09 Aligned_cols=341 Identities=19% Similarity=0.143 Sum_probs=218.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
-+.+....|.+.+.|++...+.++.+|.++||+|||+++++|++..++...+.+.++||..++++|++.|+..| ...+.
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~ 141 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVI 141 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHH
Confidence 34577788999999999999999999999999999999999999999999999999999777788999999988 67889
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcC---CCcchHHHH--HhhhHHHHH-HHHHHhccCCchHHHH
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN---AVGGWRYMY--GLSAPLALL-MGIGMWSLPPSPRWLL 291 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~---~~~~wr~~f--~~~~~~~~~-~~~~~~~~~e~p~~~~ 291 (559)
.++++|.+++|+|+++++.+...+++|.++||.+|+++.. ..+.+...+ ++..+++.. ..+..+++||+-....
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk 221 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK 221 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence 9999999999999999999999999999999999999887 222221221 222222222 3344577888732111
Q ss_pred HHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHH---HHHHHH
Q 008624 292 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI---IGGGLV 368 (559)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 368 (559)
++ +++.. ..++.+ ++ .+.. +.. .......+|++.....+ -.+.+.
T Consensus 222 ~~--~~~~~----~~~~~~----------------~~-----~~~~----~~~-~~~~v~~lrn~p~~~~i~~~~i~~l~ 269 (451)
T KOG2615|consen 222 RN--DEHST----LQEAAD----------------DR-----LALL----KFA-RIFKVAALRNPPLLDFISVLRIFGLH 269 (451)
T ss_pred hc--ccccc----hhhhhh----------------hh-----hhhc----chh-hhhhhhhhcCccccchHHHHHHHHHH
Confidence 00 00000 000000 00 0000 000 00011223333222111 111222
Q ss_pred HHHHhhCcchhhhchHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC--CchhhhhhhHHHHHHHHHHHH
Q 008624 369 LFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG--RRPLLIGGVCGIALSLLLLSA 445 (559)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~~~~ 445 (559)
.+.+...+..+.++.+.+. +.+|+++ .+.|.+....++...+.........+|.. .+-.+..+..++.-..+++..
T Consensus 270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss-~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~ 348 (451)
T KOG2615|consen 270 YFLYLELFSGLENTVLFLTHGRFGYSS-MQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL 348 (451)
T ss_pred HHHHHHHHHHHHhhHHHhhcCccCCCh-hhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc
Confidence 2222222222333333331 5577887 78888888888777777776666666655 333444444444444444333
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhh
Q 008624 446 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFI 518 (559)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~ 518 (559)
. ..+........+......... +....+.....|+++||+.+|+....+.++.++||.+.|.+..+.
T Consensus 349 ~-----~~~~~l~~~s~l~sf~~A~~v-t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 349 A-----RTPVVLYLGSTLKSFSTASVV-TCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred c-----ccchhhhHHHHHHHHHHHHhh-HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 1 223333334444443333333 344578888899999999999999999999999999998877654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=220.45 Aligned_cols=324 Identities=15% Similarity=0.012 Sum_probs=221.4
Q ss_pred ccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhHH-HHHHHHHHHHHHHHHHhh
Q 008624 120 TSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKRE-LIIAAVLYALGALTTAYA 193 (559)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-----Grr~~-~~~~~~~~~i~~~~~~~~ 193 (559)
+++.+|.+.++ +|+|.+++|++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++..++.++.
T Consensus 7 ~~~~~~~~~~~-------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~ 77 (356)
T TIGR00901 7 VGNTLPYWLRS-------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL 77 (356)
T ss_pred HHhHHHHHHHH-------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 34455556555 89999999999766 455555 99999999998 89887 467788888887777776
Q ss_pred ---cchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcc--------h
Q 008624 194 ---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG--------W 262 (559)
Q Consensus 194 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~--------w 262 (559)
.+++.+.+..++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+.+.. + |
T Consensus 78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-g~~~~~~~~w 156 (356)
T TIGR00901 78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE-FANTGLITLW 156 (356)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccccc
Confidence 456667778888899999899999999999999999999999999999999999999999888776 6 9
Q ss_pred HHHHHhhhHHHHHHHHHHhc-cCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccc
Q 008624 263 RYMYGLSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT 341 (559)
Q Consensus 263 r~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (559)
|..|++.++..++..+..++ .+|+.+. + + + ...+.
T Consensus 157 r~~f~i~ai~~l~~~~~~~~~~~e~~~~--------~--------------------~--~--~~~~~------------ 192 (356)
T TIGR00901 157 GYIFFWTALLILPGLLVTLFLAKEPQED--------A--------------------S--V--PKPLT------------ 192 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcc--------c--------------------c--c--chhHH------------
Confidence 99999998887776655543 4553210 0 0 0 00000
Q ss_pred ccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHH-HHHHHHHHHHHHHh
Q 008624 342 DEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIAVAKV 420 (559)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~ 420 (559)
.+.+..++++++++..+..........+ ..........+.+.++++.|++. .+.+......+ +..+++.++++++.
T Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~-~~~g~~~~~~~~~~~~~g~~~~g~l~ 269 (356)
T TIGR00901 193 -QAVLKPIREFFQRKNMIQALLLLLLIVL-YKLGDSAATVLTTLFLLDMGFSK-EEIALVAKINGLLGAILGGLIGGIIM 269 (356)
T ss_pred -HHHHHHHHHHHHhcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCH-HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0001124455666552222222222111 11222345567777887777776 66776666555 57789999999999
Q ss_pred hhcCCchhhhhhhHHHHHHHHHHHHHHhhcC------chhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHH
Q 008624 421 DDLGRRPLLIGGVCGIALSLLLLSAYYKILG------GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 494 (559)
Q Consensus 421 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 494 (559)
||+++|+.+..+.++.+++..++.+...... ...+......++...+.+ ...+...++..|.+|+++||+.+|
T Consensus 270 ~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g 348 (356)
T TIGR00901 270 QPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGG-LGTVAFVAFLSKLSNPKFGATQMA 348 (356)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCCccHHHHH
Confidence 9999999888887777776655544321100 112222222223233333 334455689999999999999999
Q ss_pred HHHHHHH
Q 008624 495 LAVLTNF 501 (559)
Q Consensus 495 ~~~~~~~ 501 (559)
+.++..+
T Consensus 349 ~~~~~~~ 355 (356)
T TIGR00901 349 LLSSLSA 355 (356)
T ss_pred HHHHHHh
Confidence 9887654
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=217.24 Aligned_cols=394 Identities=13% Similarity=0.011 Sum_probs=240.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
+|++..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 78999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhcCCCCc---cchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHH
Q 008624 217 APLYIAETCPSQI---RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 293 (559)
Q Consensus 217 ~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 293 (559)
..++++|++|+++ |++++++++.+.++|.++||.+++++.+.. +||+.|++.++..++..+..++.++..+ ..
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~f~~~~~~~~~~~l~~~~~~~~~~---~~ 198 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVGFNLAAVGMVIGLLTFFAGRHMLR---DI 198 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHcccccc---cC
Confidence 9999999998764 888999999999999999999999998877 8999999987665554444433322100 00
Q ss_pred hhcCCCchhhHHHHHHHHH----------Hh-hccCCCCCcccHHHHHHH---HHHhhhcccccccccchhhhccCCchh
Q 008624 294 AVQGKGSLQEYKEQAISAL----------GK-LRRRPPGDKLSERQIEDT---LVSLKSSYTDEKSEGSFLEVFQGPNLK 359 (559)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (559)
+.+++...+++.+...... .. ....+ ... ....... ..-........++. ..+.-|++. .
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~ 272 (475)
T TIGR00924 199 GSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHH-VVI--ANILLMTVTLAVIIFFFRLAFKPR--LDAVARNKM-Y 272 (475)
T ss_pred CCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhc-cHH--HHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHhHH-H
Confidence 0000000000000000000 00 00000 000 0000000 00000000000000 001111111 1
Q ss_pred HHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----chhh-
Q 008624 360 AFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGR-----RPLL- 429 (559)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-----~~~~- 429 (559)
. .+...+.....+..+.......+.+.++ .+.+ -....+++.....+..++..++..++..|++| +...
T Consensus 273 ~-~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k 351 (475)
T TIGR00924 273 A-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLK 351 (475)
T ss_pred H-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 1 1111122212222112222223333333 2211 11236778888888888777765554444433 2333
Q ss_pred -hhhhHHHHHHHHHHHHHHhhc----CchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHH
Q 008624 430 -IGGVCGIALSLLLLSAYYKIL----GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 504 (559)
Q Consensus 430 -~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 504 (559)
.++.++.+++++.+.+..... ..+.++.+... ++.+.......|...++..+..|++.||+.+|+......+|.
T Consensus 352 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~-~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~ 430 (475)
T TIGR00924 352 FTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIY-LFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGS 430 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHH-HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 567777777776665421111 12333333333 344444455667777899999999999999999999999999
Q ss_pred HHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008624 505 AIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRS 543 (559)
Q Consensus 505 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (559)
.+++.+.....+..++...+...+..+++..++.....+
T Consensus 431 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 431 LLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887777666666666655555555444444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=234.71 Aligned_cols=376 Identities=18% Similarity=0.164 Sum_probs=257.1
Q ss_pred HHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q 008624 107 ALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALG 186 (559)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~ 186 (559)
++..+......++++..++.+.++ |+++.++.|++.+.+.++++++.++.|+++||+|||+++.++.++++++
T Consensus 39 ~~~~~~~~~~~g~~~~~l~~iek~-------F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg 111 (633)
T TIGR00805 39 TCAQLQGLLYNGLVNSSLTTIERR-------FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLG 111 (633)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhh-------hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHH
Confidence 334455555567777777777665 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc---------------------------------------------------chhhHHHHHHHHhHHHHhhhh
Q 008624 187 ALTTAYAP---------------------------------------------------GLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 187 ~~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~ 215 (559)
++++++.+ .+..++++|+++|+|.+...+
T Consensus 112 ~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~ 191 (633)
T TIGR00805 112 SFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP 191 (633)
T ss_pred HHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh
Confidence 99988752 245678999999999999999
Q ss_pred hHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC---------------------cchHHHHHhhhHHHH
Q 008624 216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV---------------------GGWRYMYGLSAPLAL 274 (559)
Q Consensus 216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---------------------~~wr~~f~~~~~~~~ 274 (559)
...+++.|++|+++|+++++++..+..+|.++|+++++++.+.+ +.||..|++.+++.+
T Consensus 192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~ 271 (633)
T TIGR00805 192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL 271 (633)
T ss_pred cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887532 137778998888888
Q ss_pred HHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhcc
Q 008624 275 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 354 (559)
Q Consensus 275 ~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (559)
+..+.++++|++.+... . +.+.+..++ +.........+ .... ...++....++++++
T Consensus 272 l~~v~l~~~p~~lp~~~--------~-~~~~~~~~~--~~~~~~~~~~~---~~~~---------~~~~~~~~~~~~Ll~ 328 (633)
T TIGR00805 272 LTSIPFFFFPKALPKEG--------K-RVNVDVHET--EKLEKSEDKSR---KKNS---------DITKDFPKIIKRLLC 328 (633)
T ss_pred HHHHHHHhCccccCCcc--------c-ccchhhhhh--hcccccccccc---hhhh---------hhHHHHHHHHHHHHc
Confidence 87776666765421000 0 000000000 00000000000 0000 000111234667899
Q ss_pred CCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHH-HHHHHHHHHHHHhhhcCC--chhhh
Q 008624 355 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGV-FKLVMTWIAVAKVDDLGR--RPLLI 430 (559)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~ 430 (559)
+|.++...+..++..... ..+..|+|.++++ .+.++ ..++++.....+ +.+++.+++|+++||++. |+.+.
T Consensus 329 n~~f~~~~l~~~~~~~~~----~~~~~~lP~yl~~~~g~s~-~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~ 403 (633)
T TIGR00805 329 NPIYMLVILAQVIDSLAF----NGYITFLPKYLENQYGISS-AEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAY 403 (633)
T ss_pred CcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcH-HHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHH
Confidence 987777666555544443 3477788988875 67765 778877776665 568999999999999984 45555
Q ss_pred hhhHHHHHHHHHHHHH--------------------------Hh---------h--------------------------
Q 008624 431 GGVCGIALSLLLLSAY--------------------------YK---------I-------------------------- 449 (559)
Q Consensus 431 ~~~~~~~~~~~~~~~~--------------------------~~---------~-------------------------- 449 (559)
.+.++..++.++.... .. .
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~ 483 (633)
T TIGR00805 404 FAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSV 483 (633)
T ss_pred HHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCcc
Confidence 5555555554332200 00 0
Q ss_pred -------cC--------------------c--h-hHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHH
Q 008624 450 -------LG--------------------G--F-PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 499 (559)
Q Consensus 450 -------~~--------------------~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 499 (559)
+. . . ....+++.++..........|.. ..+...+|+++|..+.|+...+
T Consensus 484 ~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~-~i~lR~V~~~~rs~alg~~~~~ 562 (633)
T TIGR00805 484 GTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLY-MVLLRVVNPEEKSLAIGLQWLC 562 (633)
T ss_pred CCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchh-eEEeeccCcccchHHhhHHHHH
Confidence 00 0 0 01112222222233333444554 5667888999999999999976
Q ss_pred -HHHHHHHHHHhhHHhHHhh
Q 008624 500 -NFGSNAIVTFAFSPLKVFI 518 (559)
Q Consensus 500 -~~~g~~i~~~~~g~~~~~~ 518 (559)
+-+|.+-+|.++|.++|..
T Consensus 563 ~rllg~iP~pi~fG~~iD~s 582 (633)
T TIGR00805 563 MRVFATIPAPILFGLLIDVS 582 (633)
T ss_pred HHHhcCCChhHHHhhhhhch
Confidence 5566778999999999863
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=212.32 Aligned_cols=367 Identities=16% Similarity=0.003 Sum_probs=245.0
Q ss_pred HHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHH--HHHHHHHHHHHHHHHHH-HHhhhchhHHHHHHHHH
Q 008624 106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLV--VSGSLYGALLGSILVYS-IADFLGRKRELIIAAVL 182 (559)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~l~~~i~~~~~G~-l~dr~Grr~~~~~~~~~ 182 (559)
+....+..|...+...+.+|...++ .|.+.+++|++ .+++.+...+.+++++. ..||+||||.+++.+.+
T Consensus 6 ~~~ly~~~g~~~~~~~p~lp~~l~~-------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~ 78 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDALPTLLRE-------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQC 78 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHH
Confidence 3444577788888888888888887 89999999997 46678888888888855 79999999987665533
Q ss_pred H-HHHHHHHH---hhcc-hhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcC
Q 008624 183 Y-ALGALTTA---YAPG-LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257 (559)
Q Consensus 183 ~-~i~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 257 (559)
. ++.....+ ...+ ..+++..-++.++..+...+...++..|..++++++...+....+..+|.++|+.+.+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~ 158 (390)
T TIGR02718 79 LVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG 158 (390)
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222222 1222 33445555667777787888888888999988888999999999889999999998888888
Q ss_pred CCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhh
Q 008624 258 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLK 337 (559)
Q Consensus 258 ~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (559)
.. |||..|++.+++.++..+..++++|+++. + + +
T Consensus 159 ~~-gw~~~f~~~a~l~~~~~~~~~~~~~~~~~--------~--------------------~--~--------------- 192 (390)
T TIGR02718 159 KF-GQRPAFLLVACVPLASLVCVLWLKDRAVA--------S--------------------P--E--------------- 192 (390)
T ss_pred Hh-CHHHHHHHHHHHHHHHHHHHHHcCCCCcC--------c--------------------c--c---------------
Confidence 87 99999999998887766665555442210 0 0 0
Q ss_pred hcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHH-HHHHHHHHH
Q 008624 338 SSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGV-FKLVMTWIA 416 (559)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 416 (559)
.+++...++++.+|+|..+......++...... ....+.+.++++.|++. .+.+......++ ..+++.++.
T Consensus 193 ---~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~~G~s~-~~ig~~~~~~~~~~~~~g~~~~ 264 (390)
T TIGR02718 193 ---APLARRASLFRFFRRPLAWSLLALALLSAMTAV----SGFGLSKLYLVDAGWPL-EWIGRLGMAGGAVTVLLGCGGG 264 (390)
T ss_pred ---cchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHH----HHHHHhhHHHHhcCCCH-HHHHHHHhHHHHHHHHHHHHHH
Confidence 000011235677888876665554444433332 24445677788888887 777887777664 666778999
Q ss_pred HHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHhhcccccccceeecccCCc-chhhhHHH
Q 008624 417 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL-GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL-RTRGRGIS 494 (559)
Q Consensus 417 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g 494 (559)
|++.||+++|+.+..+..+.++..+......... ............+.....+.... .......+..++ +.+++.++
T Consensus 265 g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~ 343 (390)
T TIGR02718 265 AWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSV-AIYTAFMRFAGDGDQAGTDVT 343 (390)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcccchHHHHH
Confidence 9999999999988876665533332222111100 01111111111111112222222 222444444554 88999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHH
Q 008624 495 LAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLF 534 (559)
Q Consensus 495 ~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 534 (559)
+.+...++|..++|.+.|.+.|..|+...+...+++.++.
T Consensus 344 ~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 344 AVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877776665554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=221.76 Aligned_cols=328 Identities=15% Similarity=0.087 Sum_probs=227.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hchh-HHHHHHHHHHHHHHHHHHhhcc------hhhHHHHHHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRK-RELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY 206 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~ 206 (559)
+|+++.++|++.++..+..++..|+.|+++|| +||| +.++.+....+++.+++.+.++ ++.+++.+++.
T Consensus 30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (437)
T TIGR00792 30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILL 109 (437)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999997 6874 4677888888888888877664 35667778888
Q ss_pred hHHHHhhhhhHhHHHhhcC-CCCccchhhhHHHHHHHHHHHHHHHHhhhhcC------CCcchHHHHHhhhHHHHHHHHH
Q 008624 207 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQIN------AVGGWRYMYGLSAPLALLMGIG 279 (559)
Q Consensus 207 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~~wr~~f~~~~~~~~~~~~~ 279 (559)
+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+.. ...+||+.+++.++++++..+.
T Consensus 110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 189 (437)
T TIGR00792 110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLII 189 (437)
T ss_pred HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 9988887777888889987 56889999999998888888777766554432 1238999999998888776665
Q ss_pred H-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCch
Q 008624 280 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 358 (559)
Q Consensus 280 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (559)
. +..+|.++. .+. + +.++.+....++++++++.+
T Consensus 190 ~~~~~~e~~~~----------------------------~~~-~----------------~~~~~~~~~~~~~l~~~~~~ 224 (437)
T TIGR00792 190 CFFGTKERYSE----------------------------IPK-N----------------IEKKLSLKQIFKALFKNDQL 224 (437)
T ss_pred HHcCCEecCCC----------------------------CCc-c----------------cccCCCHHHHHHHHhCCHHH
Confidence 4 455553210 000 0 00000112235567778777
Q ss_pred hHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHH
Q 008624 359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 438 (559)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 438 (559)
+...+..++..+.... ...+.+.+.+....+. ...+.+.....++.+++.++.+++.||+|+|+.+..+.++.++
T Consensus 225 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 225 LILCLAYLFYNLAFNI----KNGVQVYYFTYVLGDP-ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHH----HcchhheeEeeecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 6665544444433322 2222333333222222 4566777777899999999999999999999998888877777
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCC-------cchhhhHHHHHHHHHHHHHHHHHHhh
Q 008624 439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF 511 (559)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~ 511 (559)
+.+.+.... ++.+..++..++.+.+.+. ..+..+++..|..+ ++.+|...|+.+....+|..+++.+.
T Consensus 300 ~~~~~~~~~----~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~ 374 (437)
T TIGR00792 300 GYLIFFFAG----SNLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV 374 (437)
T ss_pred HHHHHHHcc----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554321 2223333333333333322 23445566666654 46689999999999999999999999
Q ss_pred HHhHHhhhh
Q 008624 512 SPLKVFIHF 520 (559)
Q Consensus 512 g~~~~~~g~ 520 (559)
|.+.+..|+
T Consensus 375 g~ll~~~G~ 383 (437)
T TIGR00792 375 GLILGIIGY 383 (437)
T ss_pred HHHHHHcCC
Confidence 999988776
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=200.81 Aligned_cols=350 Identities=14% Similarity=0.145 Sum_probs=225.2
Q ss_pred ccCChhH-HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQ-LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~-~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
+|++..| .|.+.++++.+|+++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++.|... .
T Consensus 56 lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A 134 (511)
T TIGR00806 56 LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-A 134 (511)
T ss_pred cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHh---hhHHHHHHHHHHhccCCchHHHHHH
Q 008624 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGL---SAPLALLMGIGMWSLPPSPRWLLLR 293 (559)
Q Consensus 217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~---~~~~~~~~~~~~~~~~e~p~~~~~~ 293 (559)
...++..|+|+++|+++.++..++..+|.++++++++. +... |||+.+.+ .....++.+++.+++|..++-+.-+
T Consensus 135 ~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~-gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~ 212 (511)
T TIGR00806 135 YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTL-GWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFN 212 (511)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence 99999999999999999999999999999999999999 4455 89986543 3333444555667888555422221
Q ss_pred hhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHh
Q 008624 294 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 373 (559)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (559)
+.+.. + .....+.....+.+.....+..+.. ....-..-...+++..+++.+....+-.++. .
T Consensus 213 ~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a----~ 275 (511)
T TIGR00806 213 RLEDV-------R--GALPCELDQMVPGPGGKLEDYLGTC----RDSFLVRMLSELVTIYRNPQLLLWSLWWVFN----S 275 (511)
T ss_pred ccccc-------c--cccccccccCCCCCccccchhhhhh----hhHHHHHHHHHHHHHhcCcchhhhhHHHHHH----h
Confidence 10000 0 0000000000000000000000000 0000001122344556666544333222222 2
Q ss_pred hCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCch
Q 008624 374 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF 453 (559)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (559)
++++-+..|...+.++..-+...-.|.+-++..+.+.+.++..|++-.++.+-..+.++.....-+.+++.... .++
T Consensus 276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~---t~~ 352 (511)
T TIGR00806 276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQ---SHD 352 (511)
T ss_pred hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhc---ccc
Confidence 23344677777777766443223456666777777888888899886655443233333332222222222211 356
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhh
Q 008624 454 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 511 (559)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 511 (559)
-|...+..+++...+.+... +....+++....+.-|..+|+.+++..+-..+...+.
T Consensus 353 Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 353 IWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 67777777777777776554 3334455555667778999998887766665555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=201.12 Aligned_cols=387 Identities=15% Similarity=0.120 Sum_probs=239.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh------cchhhHHHHHHHHhHHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA------PGLGVLLVGRLLYGLGIG 211 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~------~~~~~l~~~r~l~G~~~g 211 (559)
+|++..+++++.++. ..+.+++++.|+++||+|||++++++.+++.+++++++++ ++++.+++.|++.|+|.+
T Consensus 57 lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~ 135 (591)
T PTZ00207 57 YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCM 135 (591)
T ss_pred hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 999999999998874 4556788889999999999999999999999999999997 689999999999999999
Q ss_pred hhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHH-HHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH-hcc--CCch
Q 008624 212 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL-GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSL--PPSP 287 (559)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~--~e~p 287 (559)
...+.....+.+|+| ++||++.|+...+.++|.++ +++..+++. . +|+..|++.+++.++..++. +++ |+.+
T Consensus 136 ~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~-~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~ 211 (591)
T PTZ00207 136 LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--D-NTSAYFFFLMSFALVVGILAIVFMRLPPFH 211 (591)
T ss_pred HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-hHHHHHHHHHHHHHHHHHHHHhheeCCcch
Confidence 999999999999996 77999999999999999975 555555543 2 78888888888877766544 333 4444
Q ss_pred HHHHHH-----hhcC------------CC---ch--------------------hh-----HHH-HH--H-HH-H-----
Q 008624 288 RWLLLR-----AVQG------------KG---SL--------------------QE-----YKE-QA--I-SA-L----- 312 (559)
Q Consensus 288 ~~~~~~-----~~~~------------~~---~~--------------------~~-----~~~-~~--~-~~-~----- 312 (559)
+|...+ .++. +. +. +. +.. .. . .. +
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p 291 (591)
T PTZ00207 212 LTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFP 291 (591)
T ss_pred hhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 432111 0000 00 00 00 000 00 0 00 0
Q ss_pred ------HhhccCCCCCcccH-H--HHH--HHHHHhhh-----c-c-cccccccchhhhccCCchhHHHHHHHHHHHHHhh
Q 008624 313 ------GKLRRRPPGDKLSE-R--QIE--DTLVSLKS-----S-Y-TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT 374 (559)
Q Consensus 313 ------~~~~~~~~~~~~~~-~--~~~--~~~~~~~~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (559)
+.+...+++++.+. . ..+ ......+. + + ..++...++++.+++..+|.+++.+++.....
T Consensus 292 ~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~g-- 369 (591)
T PTZ00207 292 FMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAH-- 369 (591)
T ss_pred HHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCch--
Confidence 00000100000000 0 000 00000000 0 0 00112236777777777877776554444433
Q ss_pred CcchhhhchHHHHHHc-CCCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhcCCch--------h-hhhhhHHHHHHHHHH
Q 008624 375 GQPSVLYYAGPILQSA-GFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRP--------L-LIGGVCGIALSLLLL 443 (559)
Q Consensus 375 ~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~--------~-~~~~~~~~~~~~~~~ 443 (559)
..+...+.++.+.+ |.....+ ...+.+..++++.+|++..|++.....+|+ . +.+..+ +.++.+++
T Consensus 370 --l~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll 446 (591)
T PTZ00207 370 --FVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTL 446 (591)
T ss_pred --heeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHH
Confidence 34566677777887 6633132 223778889999999999998873322221 1 222223 44444444
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHH-HHhhHHhHHhhh---
Q 008624 444 SAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV-TFAFSPLKVFIH--- 519 (559)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~-~~~~g~~~~~~g--- 519 (559)
.... ....+.+..++.+.+++..+. +....+.|+|. ++-|+-.-+.....-+|+.+. ..++|.++|.-.
T Consensus 447 ~~~~-----p~~~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~ 519 (591)
T PTZ00207 447 FLTL-----PKAALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL 519 (591)
T ss_pred HHHC-----CccHhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4321 113344455555555555544 55588999999 888888777777777777776 667788887642
Q ss_pred ----------hhHHHHHHHHHHHHHHHHHHHh
Q 008624 520 ----------FSIKMVSTWFMILLFDWLVQFC 541 (559)
Q Consensus 520 ----------~~~~~~~~~~~~~~~~~~~~~~ 541 (559)
+..++++.+++++.+.++...+
T Consensus 520 ~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 520 GQDVCTERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred CCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 3456666655555555554443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=203.66 Aligned_cols=364 Identities=13% Similarity=0.097 Sum_probs=209.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHhHHHHhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~ 215 (559)
+|++.++.+++.+.+........+++|+++|| +|||+.++++.++.+++.+++++++ +.+.++++|+++|+|.|...+
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~ 131 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA 131 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence 89999999999988887777777899999999 5999999999999999999998874 566778889999999999999
Q ss_pred hHhHHHhhcCCCCc--cchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHH
Q 008624 216 GAPLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 293 (559)
Q Consensus 216 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 293 (559)
...+++.|++|+++ |..++++++.+.++|.++||.+++++.+.. |||+.|++.++..++..+..++.. +++..+
T Consensus 132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~~i~~~~~~---~~~~~~ 207 (500)
T PRK09584 132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLITVVNFAFCQ---RWVKQY 207 (500)
T ss_pred CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHhH---HHhccC
Confidence 99999999998654 456889999999999999999999998887 999999998765555443332211 111100
Q ss_pred hhcCCCchhhHHHHHHH--------HHHhhccCCCCCcccHHHHHHH-HHHhhhcccccccccchhhhccCCchhHHHHH
Q 008624 294 AVQGKGSLQEYKEQAIS--------ALGKLRRRPPGDKLSERQIEDT-LVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 364 (559)
Q Consensus 294 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (559)
..+.+.+..+....... ........+. + ......... ........... ....+.-+++.. ..+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~- 280 (500)
T PRK09584 208 GSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ-E-IARMALGVVALGIVVIFGKEA---FAMKGAARRKMI-VAFI- 280 (500)
T ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcc-h-HHHHHHHHHHHHHHHHHHHHH---hhcCHHHHHHHH-HHHH-
Confidence 00000000000000000 0000000000 0 000000000 00000000000 000001111111 1111
Q ss_pred HHHHHHHHhhCcchhhhchHHHHHH-cC---CCCchhHHHHHHHHHHHHHHHHHHHHHHhhh----cCCchhhhhhhHHH
Q 008624 365 GGLVLFQQITGQPSVLYYAGPILQS-AG---FSAAADATRVSVVIGVFKLVMTWIAVAKVDD----LGRRPLLIGGVCGI 436 (559)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~~~~~~~~~~~~~~ 436 (559)
.++....++..+.....++..+..+ .. .......+++.....+..++..++..++-+| .+..+.+.+++++.
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~ 360 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLC 360 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHH
Confidence 1111111111111111111111111 11 1111236666777777777776666444444 44456677888888
Q ss_pred HHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhH
Q 008624 437 ALSLLLLSAYYKILG---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 512 (559)
Q Consensus 437 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g 512 (559)
+++++.+.......+ ..+.+..+...++.+.......|....++.+..|++.||+++|+......+|..++..+.+
T Consensus 361 ~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 361 SGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887766432111 1112233344444445555666777788999999999999999887766677666666554
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-21 Score=187.49 Aligned_cols=342 Identities=18% Similarity=0.128 Sum_probs=243.6
Q ss_pred hccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHhhcc
Q 008624 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-RKRELIIAAVLYALGALTTAYAPG 195 (559)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G-rr~~~~~~~~~~~i~~~~~~~~~~ 195 (559)
.+...|.++...++ .|.|..|+|.+.+...+...++++++|.++||++ +|+++.+..++.++........++
T Consensus 18 ~G~~~p~~~~~L~~-------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~ 90 (400)
T PF03825_consen 18 YGAFLPYLPLYLES-------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS 90 (400)
T ss_pred HHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444445555544 6899999999999999999999999999999986 577887888888777777788899
Q ss_pred hhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHH-hhhhcCCC--cchHHHHHhhhHH
Q 008624 196 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV-GSFQINAV--GGWRYMYGLSAPL 272 (559)
Q Consensus 196 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~-~~~l~~~~--~~wr~~f~~~~~~ 272 (559)
++.+++..++..+......|...++..+... +++.-.|-.-...++|.+++... ++.+.... .+..+.+++.+..
T Consensus 91 f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 168 (400)
T PF03825_consen 91 FWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAIL 168 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 9999999888999888889999999888875 34566777777788888777544 22222221 1233456666666
Q ss_pred HHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhh
Q 008624 273 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEV 352 (559)
Q Consensus 273 ~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (559)
+++.....+.+|+.|.... .++..++....+..++
T Consensus 169 ~~ll~~~~l~lp~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~l 203 (400)
T PF03825_consen 169 SLLLAGFALFLPKTPPKRS---------------------------------------------AKESVKKLLGLDALKL 203 (400)
T ss_pred HHHHHHHHHhCCCCccccc---------------------------------------------cCCCcccccchHHHHH
Confidence 6665555667777652000 0000011112234578
Q ss_pred ccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcC-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh
Q 008624 353 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAG-FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 431 (559)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 431 (559)
+|+|.+..+++..++...... ....|.+.++++.| .+. ...+...++..++.++.-...+++.+|+|.++++.+
T Consensus 204 lk~~~~~~Fll~~~l~~~~~~----~~~~f~~~yl~~~gg~~~-~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~ 278 (400)
T PF03825_consen 204 LKNPRFLVFLLAAFLIGISHA----AYYTFFSIYLQELGGYSG-STIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLL 278 (400)
T ss_pred hcCccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999888776665555544333 36667788899988 444 567878888889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhcCchhHHHHHHHH----HHHHHhhcccccccceeecccCCcchhhhHHHHHHHH-HHHHHHH
Q 008624 432 GVCGIALSLLLLSAYYKILGGFPLVAVSALL----LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAI 506 (559)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i 506 (559)
+.+..++=..++.... ++.+..+.... +-+..++.... ....++.+..|++.|+++.++.++. ..+|..+
T Consensus 279 a~~~~~vR~~l~a~~~----~~~~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i 353 (400)
T PF03825_consen 279 ALVAYAVRWLLYAYFS----DPWPFIVALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAI 353 (400)
T ss_pred HHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH
Confidence 9988888877776531 22222222222 23333433333 4447899999999999999999876 6799999
Q ss_pred HHHhhHHhHHhhhhhH
Q 008624 507 VTFAFSPLKVFIHFSI 522 (559)
Q Consensus 507 ~~~~~g~~~~~~g~~~ 522 (559)
+..+.|++.|+.|...
T Consensus 354 G~~igG~l~~~~g~~~ 369 (400)
T PF03825_consen 354 GSLIGGWLYDAFGARG 369 (400)
T ss_pred HHHHHHHHHHHhcchh
Confidence 9999999999987554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=185.48 Aligned_cols=368 Identities=14% Similarity=0.108 Sum_probs=235.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhchhHHHHHH-HHHHHHHHHHHHhhcchh---------------
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRELIIA-AVLYALGALTTAYAPGLG--------------- 197 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d----r~Grr~~~~~~-~~~~~i~~~~~~~~~~~~--------------- 197 (559)
+|.+....+++..+..+...+.+++.|.++| |+|||+.++++ .+...++.++.+++++.+
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA 113 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence 8999999999999999999999999999999 59999998874 666667777777776653
Q ss_pred --hHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCcc--chhhhHHHHHHHHHHHHHHHHhhhh--cCCC------------
Q 008624 198 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR--GTLISLKELFIVLGILLGYFVGSFQ--INAV------------ 259 (559)
Q Consensus 198 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~~~~~l--~~~~------------ 259 (559)
.++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++|+.++++. .+..
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~ 193 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC 193 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence 223333344457787888899999999998865 5899999999999999999999864 1110
Q ss_pred cchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhh
Q 008624 260 GGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKS 338 (559)
Q Consensus 260 ~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (559)
.+.|+.|++.+++.++..++. +..+|.|.... ++..++ +.+... +.
T Consensus 194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~----------~~~~~~------~~~~~~--~~--------------- 240 (477)
T TIGR01301 194 ANLKSCFLIDIILLAILTYIALSAVKENPLIGS----------DDFINS------EAAPPS--KH--------------- 240 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc----------ccchhh------hccccc--cc---------------
Confidence 156889999888877776655 56777542000 000000 000000 00
Q ss_pred ccccccc-ccchhhhccCC-chhHHHHHHHHHHHHHhhCcchhhhchHHHHHH--cCCCCc-----hh----HHHHHHHH
Q 008624 339 SYTDEKS-EGSFLEVFQGP-NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS--AGFSAA-----AD----ATRVSVVI 405 (559)
Q Consensus 339 ~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~----~~~~~~~~ 405 (559)
+.... +.-++.+.+-| ..+.+.+..++.++..+ .+..|.+.+..+ ++.++. ++ ..+.....
T Consensus 241 --~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f----~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~ 314 (477)
T TIGR01301 241 --GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWF----PFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLN 314 (477)
T ss_pred --chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH----HHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHH
Confidence 00000 00111222222 34444444444444333 355555655543 222211 01 33444555
Q ss_pred HHHHHHHHHHHHHHhhhcCC-chhhhhhhHHHHHHHHHHHHHHhhcCc--h--------------hHHHHHHHHHHHHHh
Q 008624 406 GVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYYKILGG--F--------------PLVAVSALLLYVGCY 468 (559)
Q Consensus 406 ~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~ 468 (559)
.+...+.+++..++.+|+|+ |+...++.++.++++....+.....++ . .+..+..+.+.+..+
T Consensus 315 s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~ 394 (477)
T TIGR01301 315 SVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPL 394 (477)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHH
Confidence 66666777788889999985 666678877777777777654321100 0 133444444444444
Q ss_pred hcccccccceeecccCCc--chhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh--hhHHHHHHHHHHHHHHHHHHHhhcc
Q 008624 469 QISFGPISWLMVSEIFPL--RTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH--FSIKMVSTWFMILLFDWLVQFCRSC 544 (559)
Q Consensus 469 ~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (559)
. ....++++++++..|+ +..|..+|+.|.+..+...+.....|.+.+..| ..+.+.+.++..+++.++..+..++
T Consensus 395 A-~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 395 A-ITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred H-HHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 4 3445788899988884 456999999999999999999999999777776 3344555566666666666655554
Q ss_pred c
Q 008624 545 W 545 (559)
Q Consensus 545 ~ 545 (559)
.
T Consensus 474 ~ 474 (477)
T TIGR01301 474 P 474 (477)
T ss_pred C
Confidence 4
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-21 Score=192.20 Aligned_cols=366 Identities=13% Similarity=-0.011 Sum_probs=237.8
Q ss_pred HhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhHHHHHHHHHHH
Q 008624 110 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKRELIIAAVLYA 184 (559)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G-----rr~~~~~~~~~~~ 184 (559)
.+..|.. ......++....++ +|++.++++...++..+...+-.+ +|+++||++ ||+.++++.++.+
T Consensus 35 y~~qGl~-~l~~~~~~~~l~~~------lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~ 106 (468)
T TIGR00788 35 LFVKGIA-GLMRLPLSPMLTDD------LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGS 106 (468)
T ss_pred HHHhhHH-HHhhhhhhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHH
Confidence 3555655 44444444444432 899999999999999999999666 999999998 7777788777663
Q ss_pred -HHHHHHHhhcchhhHH-HHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhh---HHHHHHHHHHHHHHHHhhhhcCCC
Q 008624 185 -LGALTTAYAPGLGVLL-VGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS---LKELFIVLGILLGYFVGSFQINAV 259 (559)
Q Consensus 185 -i~~~~~~~~~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---~~~~~~~~G~~~g~~~~~~l~~~~ 259 (559)
++....+..++..... +..++.+++.+...++..+++.|..+ +++....+ ......++|.++|+.++|.+.+..
T Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~ 185 (468)
T TIGR00788 107 AILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT 185 (468)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4433344445544444 48899999999999999999999998 55544333 333444589999999999998887
Q ss_pred cchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhc
Q 008624 260 GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSS 339 (559)
Q Consensus 260 ~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (559)
+||..|++.+++.++..+..++++|++... +++.+++ +.. .. ..... ... +.
T Consensus 186 -~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~-------~~~~~~~-~~~-------~~----~~~~~-~~~---~~---- 237 (468)
T TIGR00788 186 -LTRILFLITAALLLLQLFVSNLSKERRAFV-------RPRIGTY-LEM-------NM----ALLTL-GVL---AN---- 237 (468)
T ss_pred -CcchHHHHHHHHHHHHHHHHHhcccccccc-------ccccccc-chh-------hh----hhhhh-hHH---HH----
Confidence 999999999888887766667777743100 0000000 000 00 00000 000 00
Q ss_pred ccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008624 340 YTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAK 419 (559)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 419 (559)
..+.....++.+++|..+..++..++.+...........++. .+..|+++ ...|......+++.+++..+.+++
T Consensus 238 --~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~---~~~lG~s~-~~~G~~~~~~~v~~i~g~~~~~~~ 311 (468)
T TIGR00788 238 --VKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCAT---TQCLPGGP-SFSGMSKVVGNLGSLCGVGGYDRF 311 (468)
T ss_pred --HHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEE---cccCCCCc-chhhhHHHHHHHHHHHHHHHHHHH
Confidence 000111234456666665544433331111111111111111 23578887 889999999999999999999999
Q ss_pred hhhcCCchhhhhhhHHHHHHHHHHHHHH-hh---cC-chhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHH
Q 008624 420 VDDLGRRPLLIGGVCGIALSLLLLSAYY-KI---LG-GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 494 (559)
Q Consensus 420 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 494 (559)
.+|++.|+.+.++.++.+++.+...... .. .. ...+.......+...+.+..+.+. ..++.+..|++.+|+..+
T Consensus 312 ~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~a 390 (468)
T TIGR00788 312 LKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFA 390 (468)
T ss_pred HhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHH
Confidence 9999999999888888777665432111 00 00 112223333344444555555555 478889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhHHhhh
Q 008624 495 LAVLTNFGSNAIVTFAFSPLKVFIH 519 (559)
Q Consensus 495 ~~~~~~~~g~~i~~~~~g~~~~~~g 519 (559)
+.+++.++|..+++.+.+.+.+..|
T Consensus 391 l~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 391 LLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999988
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-19 Score=175.91 Aligned_cols=363 Identities=13% Similarity=0.084 Sum_probs=209.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHhHHHHhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~ 215 (559)
+|++..+.+.+.+.+.....++.+++|+++||+ |||++++++.++.+++.++++... +...++++..+.++|.|...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 799999999999999999999999999999999 999999999999999988776543 223344455556666777778
Q ss_pred hHhHHHhhcCCCC--ccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHH
Q 008624 216 GAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 293 (559)
Q Consensus 216 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 293 (559)
...+++.|.+|++ +|..++++.+.+.++|..++|.+.+++.+.. ||++.|.+.++..++..+..++..+. +...
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li~~~~~~~~---l~~~ 195 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLVIFLCGNRH---FTHT 195 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHhhhh---hccC
Confidence 7889999999875 6999999999999999999999999998887 99999998766544443333322110 0000
Q ss_pred -hhcCCCchhhHHHHHHH------HHH----hhccCCCCCcccHHHHHH-HHHH---hhhcccccccccchhhhccCCch
Q 008624 294 -AVQGKGSLQEYKEQAIS------ALG----KLRRRPPGDKLSERQIED-TLVS---LKSSYTDEKSEGSFLEVFQGPNL 358 (559)
Q Consensus 294 -~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 358 (559)
..+.++. +++ +.... ... .+....-.+......... .... ...-...+. +-.+ |+ +.
T Consensus 196 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e--r~-r~ 267 (493)
T PRK15462 196 RGVNKKVL-RAT-NFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAE---NQKQ--RK-EL 267 (493)
T ss_pred CCCCCCCc-hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHH--Hh-hH
Confidence 0000000 000 00000 000 000000000000000000 0000 000000000 0000 11 11
Q ss_pred hHHH---HHHHHHHHHHhhCcchhhhchHHHHHH--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC--ch----
Q 008624 359 KAFI---IGGGLVLFQQITGQPSVLYYAGPILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR--RP---- 427 (559)
Q Consensus 359 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~--~~---- 427 (559)
...+ +...+++..+.-....+..|.....+. .|+. ....+..+...+..++.+++..++-.|..+ |.
T Consensus 268 ~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~--ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~ 345 (493)
T PRK15462 268 GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT--VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIW 345 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee--eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcH
Confidence 1111 111111111111111222222111111 1222 357777888888888888887777666532 21
Q ss_pred -hhhhhhHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHH-HH
Q 008624 428 -LLIGGVCGIALSLLLLSAYYKILG---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN-FG 502 (559)
Q Consensus 428 -~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~ 502 (559)
-..+++++++++++.+.+.....+ ..+...++...++......+..|+..+.++++.|++.+|..+|+..... .+
T Consensus 346 ~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~ 425 (493)
T PRK15462 346 GKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAI 425 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 256778888888777765433221 1233334444455555667888999899999999999999999986533 56
Q ss_pred HHHHHHHhhHHh
Q 008624 503 SNAIVTFAFSPL 514 (559)
Q Consensus 503 g~~i~~~~~g~~ 514 (559)
|..++..+.+..
T Consensus 426 ~~~~~g~~~~~~ 437 (493)
T PRK15462 426 ANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHh
Confidence 666665555544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-21 Score=167.13 Aligned_cols=359 Identities=15% Similarity=0.103 Sum_probs=228.2
Q ss_pred HHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHH
Q 008624 101 LPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIA 179 (559)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~~~~~ 179 (559)
..+.++|+..|-..+..............| .+++.++..++.+.|..-..+.+.+.|++.|| +|.|..-++-
T Consensus 44 m~lv~mc~lgfgsyfcyd~p~alq~~fk~d-------~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~ 116 (459)
T KOG4686|consen 44 MALVFMCLLGFGSYFCYDAPGALQIDFKLD-------SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL 116 (459)
T ss_pred HHHHHHHHhcccceeecCCchhhhhhhhcc-------cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence 345555666666655555544444444444 88899999999999999999999999999996 6888777776
Q ss_pred HHHHHHHHHHHH---hhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhc
Q 008624 180 AVLYALGALTTA---YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI 256 (559)
Q Consensus 180 ~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 256 (559)
+....+|.++++ ..+.+|.+.++||+.|+|.-...+..+.++.-|+..|+.+.++|+.....-+|..+-..+.+++.
T Consensus 117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly 196 (459)
T KOG4686|consen 117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY 196 (459)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence 666677777665 47899999999999999988888889999999999999999999999999999887777776665
Q ss_pred CCCcch-----HHH---HHhhhHHHHH-HHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHH
Q 008624 257 NAVGGW-----RYM---YGLSAPLALL-MGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSER 327 (559)
Q Consensus 257 ~~~~~w-----r~~---f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (559)
+..... +.. .+......+. .++...-+ -| .++.++..+++-.+..
T Consensus 197 ~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l----g~--------------~D~rAerilh~e~g~~-------- 250 (459)
T KOG4686|consen 197 DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL----GL--------------SDDRAERILHLEEGFL-------- 250 (459)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh----hh--------------hhhHHHHHHhhhcCcc--------
Confidence 532100 000 0011111110 11111000 00 0111222221111100
Q ss_pred HHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHH-HHcCCCCchhHHHHHHHHH
Q 008624 328 QIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIG 406 (559)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 406 (559)
.+ ..+.+-..-+ .|.+|.+.+.+++.+...+ .+....|.++ +++|+++ ..++.+.+...
T Consensus 251 -------------Ge-~pkLtdv~~f-~ppfw~~~iicv~yyva~f----PFi~lg~~fF~~rfGlS~-~~a~~i~s~vy 310 (459)
T KOG4686|consen 251 -------------GE-EPKLTDVNTF-YPPFWVLVIICVLYYVAWF----PFITLGPMFFQKRFGLSA-VSAGNILSTVY 310 (459)
T ss_pred -------------cC-Cccccccccc-CccHHHHHHHHHHHHHHHH----HHhhhhHHHHHHhhCCCh-hhccchhhhhh
Confidence 00 0000001112 2345555554544444332 2334455555 5588887 66777777677
Q ss_pred HHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCc
Q 008624 407 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL 486 (559)
Q Consensus 407 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 486 (559)
....+.+++.|.++||+|++...+.+..+..+..-....+.. .+++... ++.+..+.... ...|..+.-+.|.
T Consensus 311 ~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~---lsPy~~m---~~lGLsysllA-cslWP~va~~vpE 383 (459)
T KOG4686|consen 311 GISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF---LSPYTSM---TFLGLSYSLLA-CSLWPCVASLVPE 383 (459)
T ss_pred hhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh---ccHHHHH---HHHhhhHHHHH-HHHhhhhhhhCCH
Confidence 777888899999999999998777665554444433333322 2344333 33333332221 1234556667788
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh
Q 008624 487 RTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH 519 (559)
Q Consensus 487 ~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g 519 (559)
++.|++.|.++.+.++|-.+.|.+.|.+.|.-|
T Consensus 384 ~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 384 EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 999999999999999999999999999999877
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=186.81 Aligned_cols=326 Identities=15% Similarity=0.091 Sum_probs=212.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hchh-HHHHHHHHHHHHHHHHHHhhcc------hhhHHHHHHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRK-RELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY 206 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~ 206 (559)
+|++..++|.+.++..+..++..|+.|.++|| +||| +.++.+.+..+++.++....++ ++.+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 7875 5566777777777766555543 35566667777
Q ss_pred hHHHHhhhhhHhHHHhhcC-CCCccchhhhHHHHHHHHHHHHHHHHhhhhcCC------CcchHHHHHhhhHHHHHHHHH
Q 008624 207 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQINA------VGGWRYMYGLSAPLALLMGIG 279 (559)
Q Consensus 207 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~------~~~wr~~f~~~~~~~~~~~~~ 279 (559)
+.+.........++..|+. ++++|.+..++...+..+|..+++.+...+... ..+|+..+.+.++++++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7777677777788999988 558899888888888888877776654333211 127888888888777666554
Q ss_pred Hh-ccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCch
Q 008624 280 MW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 358 (559)
Q Consensus 280 ~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (559)
.+ ..+|.++ ++ + .++.+....++.++|++.+
T Consensus 200 ~~~~~~e~~~------------------------------~~-~-----------------~~~~~~~~~~~~~~~n~~~ 231 (444)
T PRK09669 200 CFFMTKERYT------------------------------PE-V-----------------DNSSSVWKDLKLLLGNSQW 231 (444)
T ss_pred HhCCeEEecC------------------------------CC-C-----------------cCCCCHHHHHHHHhCCchH
Confidence 43 3333210 00 0 0011112345677888887
Q ss_pred hHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHH
Q 008624 359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 438 (559)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 438 (559)
+...+..++.............+| .+.. .......+.+.....+..+++.++.+++.||+|+|+.+..+.++.++
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~y~----~~~~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 232 RIMFIFNVVLLTAVVTRGGATLYY----VNYV-LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVI 306 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhee----eeee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 776655444333322211112222 2221 22223444555566677788889999999999999988877665554
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCC-------cchhhhHHHHHHHHHHHHHHHHHHhh
Q 008624 439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF 511 (559)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~ 511 (559)
..+.+.... .++.+..++..++.+.+.+ ...+..++++.|..+ .+..|...|+.+.+..+|..+++.+.
T Consensus 307 ~~~~~~~~~---~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 307 LSALIFFIP---PSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred HHHHHHHhC---cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 333322221 1233333333333333333 444566678877764 33456778899999999999999999
Q ss_pred HHhHHhhhh
Q 008624 512 SPLKVFIHF 520 (559)
Q Consensus 512 g~~~~~~g~ 520 (559)
|.+.+..|+
T Consensus 383 g~ll~~~Gy 391 (444)
T PRK09669 383 GWILAWVDY 391 (444)
T ss_pred HHHHHHcCC
Confidence 999998876
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=168.34 Aligned_cols=391 Identities=15% Similarity=0.086 Sum_probs=261.7
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 008624 100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 179 (559)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~ 179 (559)
|+++++.++..+..++.--.+++....... +++ +.+..-|+.-+|++.+....+++-|+.|++|-|...+++
T Consensus 44 W~vLl~~slL~~SN~~qWI~ya~i~n~~~~-------~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 44 WVVLLAFSLLNFSNGMQWIQYAPINNYVNS-------FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred hHHHHHHHHHHhcCcchheeehhHHHHHHH-------Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 444555555555554443333332222221 267 778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc------chh--hHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHH
Q 008624 180 AVLYALGALTTAYAP------GLG--VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV 251 (559)
Q Consensus 180 ~~~~~i~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~ 251 (559)
..+.++|..+-..+. .++ ....+..+.+.++-.....-..+..-||+++||..+..+-..+..+|.++|.++
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 999999999877652 344 666788888888777777767778889999999999999999999999999999
Q ss_pred hhhhcCCC-----cchHH--HHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCc
Q 008624 252 GSFQINAV-----GGWRY--MYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDK 323 (559)
Q Consensus 252 ~~~l~~~~-----~~wr~--~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (559)
...+..+. ..|-. .|+...+++.+.+++. +..++.|+.... .
T Consensus 196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps--------------~---------------- 245 (480)
T KOG2563|consen 196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS--------------A---------------- 245 (480)
T ss_pred cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc--------------h----------------
Confidence 88887543 25654 3554555554444433 333332220000 0
Q ss_pred ccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHH
Q 008624 324 LSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSV 403 (559)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (559)
.. ....+..-..+.++.++++++....+.+.+......+ ....+...+...|+.. ..+|+...
T Consensus 246 ------s~------~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~----l~~~l~~~l~~sgY~~-~~aG~ig~ 308 (480)
T KOG2563|consen 246 ------SQ------AALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNS----LSTLLNLALCPSGYEG-VFAGYIGA 308 (480)
T ss_pred ------hH------hhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHH----HHHHhhhccccccCCc-cccchhHH
Confidence 00 0000112345677889998877777665555554333 3333333344456665 78999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchh-hhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecc
Q 008624 404 VIGVFKLVMTWIAVAKVDDLGRRPL-LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSE 482 (559)
Q Consensus 404 ~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (559)
...+++++++.+.|.+.||.+.-+. ..+......++.+.+...... ....+.+...+...+.++.+..|+-.-+..|
T Consensus 309 l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~--~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE 386 (480)
T KOG2563|consen 309 LMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF--LGDSVIVFTTCGLLGFFGTGYLPIGFELGVE 386 (480)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc--CCceEehhhhHHHHHHhhcCCCCcceeeeee
Confidence 9999999999999999999876443 333344434442222222221 2222333344445556666777888888888
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh----hhHHHHHHHHHHHHHHHHHHHhhccccc
Q 008624 483 IFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH----FSIKMVSTWFMILLFDWLVQFCRSCWEQ 547 (559)
Q Consensus 483 ~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (559)
..-|..-++..|+.+..+++.+++-.++.+...+..+ +....+.....+++...+..++++..++
T Consensus 387 ~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 387 TTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred eccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 8666888899999999999999999999999988887 5555555555566566666555544443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=178.09 Aligned_cols=354 Identities=15% Similarity=0.126 Sum_probs=226.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH--HHHHH-HHHHhh----cch-hhHHHHHHHHhHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL--YALGA-LTTAYA----PGL-GVLLVGRLLYGLG 209 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~--~~i~~-~~~~~~----~~~-~~l~~~r~l~G~~ 209 (559)
.|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++..+.+ ...+. +...+. .|+ ...+++-+..|+.
T Consensus 38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~ 117 (412)
T PF01306_consen 38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV 117 (412)
T ss_dssp H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999966654433222 22222 222222 232 2333444445555
Q ss_pred HHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc-CCchH
Q 008624 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPR 288 (559)
Q Consensus 210 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~ 288 (559)
..+..++.-+++.++. ++.+.-.|-.-...++|.+++..++|.+.+. +-+..||+....+++..++.++. |+.++
T Consensus 118 f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~~~~~ 193 (412)
T PF01306_consen 118 FNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKPDVPP 193 (412)
T ss_dssp TTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred HcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence 5556666777666654 3445667788889999999999999998764 45678887776666665555443 33221
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHH
Q 008624 289 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 368 (559)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (559)
.... .+. ...++++.+.+...+++|+|++|.+.+.....
T Consensus 194 ~~~~----------------------------~~~-------------~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~ 232 (412)
T PF01306_consen 194 QAEV----------------------------ADA-------------LGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGV 232 (412)
T ss_dssp SS-S----------------------------STT-------------SSS------HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhh----------------------------hcc-------------cccCCCCCcHHHHHHHhcchhHHHHHHHHHHH
Confidence 0000 000 00000111112356788888888766544333
Q ss_pred HHHHhhCcchhhhchHHHHHHc----CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHH
Q 008624 369 LFQQITGQPSVLYYAGPILQSA----GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 444 (559)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 444 (559)
...+. .+-...+.|+... +.++ ...|.+.+...+..++.-.+.+++.+|+|.|+.++++..++.+=..+.+
T Consensus 233 ~~~Y~----vfdqqf~~y~~~~f~~~~~g~-~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~ 307 (412)
T PF01306_consen 233 AAIYD----VFDQQFPIYFASFFQSAGQGN-QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG 307 (412)
T ss_dssp HHHHH----HHHHHHHHHHHHTSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHhcccccCh-hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh
Confidence 22222 2222234444433 2233 5688888899999999999999999999999999999999988888877
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHH-HHHHHHHHHHHHHhhHHhHHhhhhhHH
Q 008624 445 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKVFIHFSIK 523 (559)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~g~~~~~~g~~~~ 523 (559)
+. .+++.....-.+-+.-+.....+. .-++.+.+|++..++...+. +...++|.++.+.+.|.++|+.|+...
T Consensus 308 ~~-----~~~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~t 381 (412)
T PF01306_consen 308 FA-----TNPWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHT 381 (412)
T ss_dssp T-------SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-----cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHH
Confidence 64 345555544444444444444333 47888999999999999886 567899999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 008624 524 MVSTWFMILLFDWLVQFCRSCWEQ 547 (559)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~ 547 (559)
+++.+++++...++..+..++.++
T Consensus 382 ylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 382 YLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHHHheeeecCCCc
Confidence 888887777777776666555544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=170.13 Aligned_cols=277 Identities=16% Similarity=0.081 Sum_probs=190.9
Q ss_pred HhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC-----------
Q 008624 191 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV----------- 259 (559)
Q Consensus 191 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~----------- 259 (559)
+...+|+.++++-++.|.|.+...+..+.++.+..++|++.+.+++.+..+++|.++||++++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999999877321
Q ss_pred ----cchHHHHHhhhHHHHHHHHHHhcc--CCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHH
Q 008624 260 ----GGWRYMYGLSAPLALLMGIGMWSL--PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL 333 (559)
Q Consensus 260 ----~~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (559)
.+|+++|++.+.+.++..+++.+. ||... + + ++ +
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~---------------~-~---------------~~----~----- 124 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE---------------A-D---------------VA----R----- 124 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc---------------c-c---------------cc----c-----
Confidence 279999997777666555544433 43210 0 0 00 0
Q ss_pred HHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH---cCCCCchhHHHHHHHHHHHHH
Q 008624 334 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS---AGFSAAADATRVSVVIGVFKL 410 (559)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 410 (559)
. .+++....++.++++.++... +..+.+.+.......|.+.|+.+ .+.++ ...+........+.+
T Consensus 125 --~-----~~~~~~~~~~~~~~~~~~l~~----~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~-~~a~~~~s~~~~~~~ 192 (310)
T TIGR01272 125 --V-----SSGDTTQKTSAFQFTHLVLGA----LGIFVYVGAEVSAGSFLVNFLSDPHALGLPE-DQAAHFTAYTWGGAM 192 (310)
T ss_pred --c-----ccccccchhhHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHH
Confidence 0 000000112344444444333 33333433445577788888865 36665 788999999999999
Q ss_pred HHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhh
Q 008624 411 VMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRG 490 (559)
Q Consensus 411 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 490 (559)
+|+++++++.||+++|+.+..+..+..++.+++... +. ........+.+.+.+. ..|...+...+..| +..+
T Consensus 193 iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-----~~-~~~~~~~~l~g~~~s~-i~P~~~s~a~~~~~-~~~~ 264 (310)
T TIGR01272 193 VGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-----HG-YVAMWFVLALGLFNSI-MFPTIFSLALNALG-RHTS 264 (310)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----CC-HHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh-hhhh
Confidence 999999999999999998877776666665443321 11 2222233334434333 34555567777767 4466
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHH
Q 008624 491 RGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTW 528 (559)
Q Consensus 491 ~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~ 528 (559)
++.++. ....+|+++.|.+.|.+.|..|....+++..
T Consensus 265 ~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 265 QGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred hhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 677775 5688999999999999999998777665433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=179.76 Aligned_cols=329 Identities=19% Similarity=0.207 Sum_probs=241.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhchhHHH-HHHHHHHHHHHHHHHhh-c-------chhhHHHHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKREL-IIAAVLYALGALTTAYA-P-------GLGVLLVGRL 204 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d----r~Grr~~~-~~~~~~~~i~~~~~~~~-~-------~~~~l~~~r~ 204 (559)
+|+++..+|.+..+.-+..++..|+.|.++| |+||||.+ ++|....+++.+++... + ....+.+..+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 7999999999999999999999999999999 89977655 46888888888777765 4 2334677777
Q ss_pred HHhHHHHhhhhhHhHHHhhcCC-CCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCc------chHHHHHhhhHHHHHHH
Q 008624 205 LYGLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVG------GWRYMYGLSAPLALLMG 277 (559)
Q Consensus 205 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~------~wr~~f~~~~~~~~~~~ 277 (559)
+..++.........++..|..+ +++|.+..+.-..+..+|.++...+.+.+.+..+ +|++..++.+++.++..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 7899999898899999999997 5789999999999999998777777666654322 69999998888888776
Q ss_pred HHHh-ccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCC
Q 008624 278 IGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356 (559)
Q Consensus 278 ~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (559)
++.+ ..+|.++ +..++.++.+.++.++.+++++
T Consensus 192 ~i~~~~~ke~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~nr 225 (428)
T PF13347_consen 192 LITFFFVKERSV----------------------------------------------EVTEQEKKISLRDSLRSLFRNR 225 (428)
T ss_pred hhhhheeeeccc----------------------------------------------cccccccccccccchhhhcccc
Confidence 6554 4555110 0000111223345577888888
Q ss_pred chhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHH
Q 008624 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 436 (559)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 436 (559)
.++.......+..+.... .....+++.+..-..+ ...+.......+..+++.++.++++||+|+|+.+..+..+.
T Consensus 226 ~~~~l~~~~~~~~~~~~~----~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~ 300 (428)
T PF13347_consen 226 PFRILLLAFFLQWLAFAL----MNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLA 300 (428)
T ss_pred hHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHH
Confidence 887777666555444433 3333444454433333 45677777888899999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCc-------chhhhHHHHHHHHHHHHHHHHHH
Q 008624 437 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL-------RTRGRGISLAVLTNFGSNAIVTF 509 (559)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~i~~~ 509 (559)
+++.+++.+... .+.+..++..++.+.+.+. .....+++..|..+. +..|...|+.+....++..+++.
T Consensus 301 ~~~~~~~~~~~~---~~~~~~~i~~~l~gi~~~~-~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~ 376 (428)
T PF13347_consen 301 ALGFLLLFFLGP---GSPWLVLILFILAGIGYGA-FFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGA 376 (428)
T ss_pred HHHHHHHHHHHh---hhHHHHHHHHHHhHhhhcc-cccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHH
Confidence 888887776542 3445445444455444443 445667888888763 44688999999999999999999
Q ss_pred hhHHhHHhhhhh
Q 008624 510 AFSPLKVFIHFS 521 (559)
Q Consensus 510 ~~g~~~~~~g~~ 521 (559)
+.+.+.+..|+.
T Consensus 377 i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 377 IVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHhCcC
Confidence 999998877653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-17 Score=164.55 Aligned_cols=351 Identities=16% Similarity=0.103 Sum_probs=230.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-HHHHHHHHHHHHHHhh-c-chhhHHHHHHHHhHHHHhhhhhHh
Q 008624 142 AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI-IAAVLYALGALTTAYA-P-GLGVLLVGRLLYGLGIGLAMHGAP 218 (559)
Q Consensus 142 ~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~ 218 (559)
.+..++..++..+..++..|+.|.++|+-|+||.++ +...+..+++++..+. + +++...+.-++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899999999999999999999998766555 4555555666666663 3 455555556666678888888999
Q ss_pred HHHhhcCCCCcc--------------------------chhhhHHHHHHHHHHHHHHHHhhhhcCCC-------cchHHH
Q 008624 219 LYIAETCPSQIR--------------------------GTLISLKELFIVLGILLGYFVGSFQINAV-------GGWRYM 265 (559)
Q Consensus 219 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-------~~wr~~ 265 (559)
+++.|..+++++ ++..+.-.....+|.++..++.-.+.... .+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999888 89999888888888888777655543221 135888
Q ss_pred HHhhhHHHHHHHH-HHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccc
Q 008624 266 YGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 344 (559)
Q Consensus 266 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (559)
+.+.++.-++..+ ..+++||.|+.. ..+ ..........+ +
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~------~~~---~~~~~~~~g~~------------------------------~ 269 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPR------PLP---SGSSYLRFGFK------------------------------R 269 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC------CCC---cchhHHHHHHH------------------------------H
Confidence 8888777666555 445677755300 000 00000000000 0
Q ss_pred cccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 423 (559)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 423 (559)
-...++++.|.|....++++. +.+.-+.+.+......|.. .++++. .+...+.....+.+++|+++.+++.||+
T Consensus 270 l~~t~k~~~~~~~~~~fLia~----~l~~dg~~ti~~~~~i~a~~~lg~s~-~~l~~~~l~~~i~a~~Ga~~~g~l~~r~ 344 (477)
T PF11700_consen 270 LWRTFKEIRKLRQLFLFLIAY----FLYSDGVNTIISFAGIYATEVLGMST-TQLIVFGLVVQIVAIIGALLFGWLQDRF 344 (477)
T ss_pred HHHHHHHHHhChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111234444444444444433 3333344556666666665 688887 7788888899999999999999999999
Q ss_pred CCc--hhhhhhhHHHHHHHHHHHH--HHhhc-CchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHH
Q 008624 424 GRR--PLLIGGVCGIALSLLLLSA--YYKIL-GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL 498 (559)
Q Consensus 424 ~~~--~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 498 (559)
|.| +++..+.++..+..+.-.+ ..... ....+...++.+ +.+.+.....+...++.+|+.|+++.+.-+|+...
T Consensus 345 g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~-~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i 423 (477)
T PF11700_consen 345 GPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV-LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAI 423 (477)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 998 6766655544332222111 11100 123333333333 34444445566778999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHhHHhhhh-hHHHHHHHHHHHHHHHH
Q 008624 499 TNFGSNAIVTFAFSPLKVFIHF-SIKMVSTWFMILLFDWL 537 (559)
Q Consensus 499 ~~~~g~~i~~~~~g~~~~~~g~-~~~~~~~~~~~~~~~~~ 537 (559)
.+...+++||+++|.+.+..|. ...+....+..++..++
T Consensus 424 ~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l 463 (477)
T PF11700_consen 424 TGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL 463 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999984 44444444444433333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=180.55 Aligned_cols=334 Identities=14% Similarity=0.025 Sum_probs=211.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhch-hHHHHHHHHHHHHHHHHHHhhcc------hhhHHHHHHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGR-KRELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY 206 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d----r~Gr-r~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~ 206 (559)
+|++..++|.+..+.-+.-++..|+.|.++| |+|| |+.++++.+..+++.+++...++ +..+++..++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999 6698 56666788888887666644332 33556666777
Q ss_pred hHHHHhhhhhHhHHHhhcC-CCCccchhhhHHHHHHHHHHHHHHHHhhhhcC------CCcchHHHHHhhhHHHHHHHHH
Q 008624 207 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQIN------AVGGWRYMYGLSAPLALLMGIG 279 (559)
Q Consensus 207 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~~wr~~f~~~~~~~~~~~~~ 279 (559)
+++.....+...+++.|+. ++++|.+..++-..+.++|..+.+.+...+.. ...+|+....+.+++.++..+.
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888889999998 68999999998777777776665554433211 1115777777777666655444
Q ss_pred Hh-ccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCch
Q 008624 280 MW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 358 (559)
Q Consensus 280 ~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (559)
.+ ..+|.+.. +... .++.++.+.+..++.+++++.+
T Consensus 197 ~~~~~~e~~~~------------------------------~~~~-------------~~~~~~~~~~~~~~~~~~n~~~ 233 (473)
T PRK10429 197 TLRNVHEVYSS------------------------------DNQV-------------SAEGSHLTLKDIVALIYKNDQL 233 (473)
T ss_pred HHcCceecCCc------------------------------cccc-------------cccccCCCHHHHHHHHhcCHHH
Confidence 43 35553210 0000 0000001112223445677666
Q ss_pred hHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHH
Q 008624 359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 438 (559)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 438 (559)
+.++...++....... ...+.+++.+....+. ...+.+.....++.+++.++.+++.||+|+|+.+..+..+.++
T Consensus 234 ~~ll~~~~~~~~~~~~----~~~~~~y~~~y~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 234 SCLLGMALAYNIASNI----INGFAIYYFTYVIGDA-DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHH----HhhheeeEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 6555444433332222 2223333333333232 4556666677788899999999999999999998877776665
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCC-------cchhhhHHHHHHHHHHHHHHHHHHhh
Q 008624 439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF 511 (559)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~ 511 (559)
+.+.+...........+..++..++.+.+.+ ...+...++..|..+ .+..|..+|+...+..++..+++.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~-~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~ 387 (473)
T PRK10429 309 SCGVLLLMGLAAPHNALLIVIAGILLNIGTA-LFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI 387 (473)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5544433211111223333333333333333 233445567777754 34456688999999999999999999
Q ss_pred HHhHHhhhh
Q 008624 512 SPLKVFIHF 520 (559)
Q Consensus 512 g~~~~~~g~ 520 (559)
|.+.+..|+
T Consensus 388 g~~l~~~Gy 396 (473)
T PRK10429 388 GVVLGLIGY 396 (473)
T ss_pred HHHHHHcCC
Confidence 999987765
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=175.11 Aligned_cols=325 Identities=14% Similarity=0.040 Sum_probs=197.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh----chhHHH-HHHHHHHHHHHHHHHhhc-----c--hhhHHHHHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL----GRKREL-IIAAVLYALGALTTAYAP-----G--LGVLLVGRLL 205 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~----Grr~~~-~~~~~~~~i~~~~~~~~~-----~--~~~l~~~r~l 205 (559)
+|++..++|.+.+...+..++..++.|+++||. |||+.+ +.+.+...+..++....+ + .+.+++..++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 799999999999999999999999999999996 777755 555555554444432111 1 2234455677
Q ss_pred HhHHHHhhhhhHhHHHhhcCCC-CccchhhhHHHHH-----HHHHHHHHHHHhhhhcCCC-cchHHHHHhhhHHHHHHHH
Q 008624 206 YGLGIGLAMHGAPLYIAETCPS-QIRGTLISLKELF-----IVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGI 278 (559)
Q Consensus 206 ~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~ 278 (559)
.+++.+...+...++..+...+ ++|.+..++-..+ ..++..++|++++...... .+|.....+.++++++..+
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 198 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYF 198 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 7888888887777877777644 6788876665543 3355666666665432111 0122112222333332222
Q ss_pred HH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCc
Q 008624 279 GM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 357 (559)
Q Consensus 279 ~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (559)
+. ...+|++. . +.++...+..++.+++++.
T Consensus 199 ~~~~~~~e~~~----------------------------~---------------------~~~~~~~~~~~~~l~~n~~ 229 (448)
T PRK09848 199 ICFKSTRENVV----------------------------R---------------------IVAQPSLKISLQTLKRNRP 229 (448)
T ss_pred HHHcCcEeccC----------------------------C---------------------CccCCCHHHHHHHHhCCch
Confidence 22 23444211 0 0000111223567888888
Q ss_pred hhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHH
Q 008624 358 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 436 (559)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 436 (559)
+....+..++....... ...+.+.++++ .+.+. ...++......++.+++.++.+++.||+++|+.+.++.++.
T Consensus 230 f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~ 304 (448)
T PRK09848 230 LFMLCIGALCVLISTFA----VSASSLFYVRYVLNDTG-LFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLG 304 (448)
T ss_pred HHHHHHHHHHHHHHHHH----HhhhheeeEeeecCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 77766555554443332 23334444444 34333 34444444446677888999999999999999999988887
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcc-------hhhhHHHHHHHHHHHHHHHHHH
Q 008624 437 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR-------TRGRGISLAVLTNFGSNAIVTF 509 (559)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~i~~~ 509 (559)
+++.+.+.+.. ..+.+..+....+.+.+.+.. .+...++..|..|.+ ..|...|+.+....+|..+++.
T Consensus 305 ~i~~~~~~~~~---~~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~ 380 (448)
T PRK09848 305 TCGYLLFFWVS---VWSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS 380 (448)
T ss_pred HHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence 77766655321 122333333333333333333 344556667776543 4689999999999999999999
Q ss_pred hhHHhHHhhhh
Q 008624 510 AFSPLKVFIHF 520 (559)
Q Consensus 510 ~~g~~~~~~g~ 520 (559)
+.+.+.+..|+
T Consensus 381 i~g~~l~~~G~ 391 (448)
T PRK09848 381 IPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHcCC
Confidence 99999887765
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=157.20 Aligned_cols=402 Identities=15% Similarity=0.095 Sum_probs=250.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhc--chhhHHHHHHHHhHHHHhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAM 214 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~ 214 (559)
+|+++++..-+.++|..-.-+..+++|+++||+ |+|+.+++|.++..+|.++.+.+. +...++++-++.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 779999999999999988889999999999996 999999999999999999999884 78899999999999999999
Q ss_pred hhHhHHHhhcCCCC--ccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHH
Q 008624 215 HGAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL 292 (559)
Q Consensus 215 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~ 292 (559)
+....++.|.+|++ +|-..++++.++.++|.+++|++.+++.+.. ||...|...++-..+.++..+..+..-.+...
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~ 214 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG 214 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHccchhcCCCC
Confidence 99999999999764 4778899999999999999999999999998 99999999888887777766554321110000
Q ss_pred HhhcCCCchhhHHHHHH----HHHHhh-ccCCCCCccc-HHHHHHHHHH---hhhcccccccccchhhhccCCchhHHHH
Q 008624 293 RAVQGKGSLQEYKEQAI----SALGKL-RRRPPGDKLS-ERQIEDTLVS---LKSSYTDEKSEGSFLEVFQGPNLKAFII 363 (559)
Q Consensus 293 ~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (559)
++.+...+......... ...... ......+... .......... ..+....++.....++++ ..-++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~---~~~~Lfl 291 (498)
T COG3104 215 VPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLL---AAIPLFL 291 (498)
T ss_pred CCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH---HHHHHHH
Confidence 00000000000000000 000000 0000000000 0000000000 000000000000000110 1112233
Q ss_pred HHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-------hhhhhhhHHH
Q 008624 364 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR-------PLLIGGVCGI 436 (559)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~~~~~~~~~ 436 (559)
...+++..+.-..+.+..|.....++..+.-.....+..+...+.-++.+++..++..+.+++ .-..++..++
T Consensus 292 ~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 292 FAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 333333333333444555544433332121224677888888888888888888887774443 1244566666
Q ss_pred HHHHHHHHHHHhh----cCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhH
Q 008624 437 ALSLLLLSAYYKI----LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 512 (559)
Q Consensus 437 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g 512 (559)
+.+++++...... .+..+.++++...++......+.+|+..+++..+.|+...+..+++.......+..++..+.+
T Consensus 372 g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 372 GLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 6666666554211 223445555555666666677888888899999999999999999988888888888877776
Q ss_pred H------hHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008624 513 P------LKVFIHFSIKMVSTWFMILLFDWLVQFCRS 543 (559)
Q Consensus 513 ~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (559)
. ..+.......|...++..++.........+
T Consensus 452 ~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 452 LTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 3 344455555666666555555554444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-17 Score=162.54 Aligned_cols=325 Identities=12% Similarity=0.034 Sum_probs=205.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hchhHHH-HHHHHHHHHHHHHHHhhcc------hhhHHHHHHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRKREL-IIAAVLYALGALTTAYAPG------LGVLLVGRLLY 206 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr----~Grr~~~-~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~ 206 (559)
+|+++..+|.+..+.-+.-++.-|+.|.++|| +||||.+ +++.+..+++.+++-..++ +..+++..++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999995 7987554 4676777777776655443 34566667777
Q ss_pred hHHHHhhhhhHhHHHhhcCC-CCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC------cchHHHHHhhhHHHHHHHHH
Q 008624 207 GLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAV------GGWRYMYGLSAPLALLMGIG 279 (559)
Q Consensus 207 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------~~wr~~f~~~~~~~~~~~~~ 279 (559)
.++.......-.++..|+.+ ++||.+..++...+..+|..+++.+...+.... .+|+....+.+++.++..++
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999986 688999999999999998888877755443321 26887777777766665544
Q ss_pred Hh-ccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCch
Q 008624 280 MW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 358 (559)
Q Consensus 280 ~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (559)
.+ ..+|.++ ++ .++...+..++..++++.+
T Consensus 200 ~~~~~kE~~~------------------------------~~-------------------~~~~~~~~~l~~~~~Nk~~ 230 (460)
T PRK11462 200 CFFTTKERVE------------------------------AP-------------------PTTTSMREDLRDIWQNDQW 230 (460)
T ss_pred HHhcceeccC------------------------------CC-------------------ccCCCHHHHHHHHhCChHH
Confidence 43 3333211 00 0000012234566777766
Q ss_pred hHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHH
Q 008624 359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 438 (559)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 438 (559)
+.+.....+.............+|..++ ...+ ...+.+.....++.+++.++++++.||+++|+.+..+..+..+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y~----~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVTWI----LGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhh----cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 6554443333332222112222222222 2222 3445566777888899999999999999999887655444433
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCC-------cchhhhHHHHHHHHHHHHHHHHHHhh
Q 008624 439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF 511 (559)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~ 511 (559)
..+++.+.. ....+..+...++.+.+ .....++.+++..|..+ .+..|...+.......+|..+++.+.
T Consensus 306 ~~~~~~~~~---~~~~~~~~~~~~l~g~~-~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~ 381 (460)
T PRK11462 306 ISLAMFFVP---MQASITMFVFIFVIGVL-HQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI 381 (460)
T ss_pred HHHHHHHhc---hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322211 12222222222333222 23333444566666644 23345556777788999999999999
Q ss_pred HHhHHhhhh
Q 008624 512 SPLKVFIHF 520 (559)
Q Consensus 512 g~~~~~~g~ 520 (559)
|.+.+..|+
T Consensus 382 g~iL~~~Gy 390 (460)
T PRK11462 382 GWMLAYGGY 390 (460)
T ss_pred HHHHHHcCC
Confidence 998887665
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-18 Score=162.47 Aligned_cols=403 Identities=15% Similarity=0.140 Sum_probs=234.0
Q ss_pred ccccccchhhHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008624 88 ATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIA 167 (559)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~ 167 (559)
+.+.++.+||..++..+.. ++.+...+++.+..-+...+ -| .+.+.+..||+.++..++.+++++++|.+.
T Consensus 25 ~~~~~~t~wrsi~l~~~~s----fl~~v~~sI~~~s~wpYl~~---lD--~~A~~~ffG~viaa~slg~~i~~liF~~Ws 95 (488)
T KOG2325|consen 25 PLDERKTNWRSIYLALLNS----FLVAVQFSIYLTSMWPYLQK---LD--PTATATFFGLVIAASSLGHAIFSLIFGIWS 95 (488)
T ss_pred cccccCCchHhHHHHHHHH----HHHhhhheEEEeecchhhhh---cC--CCCCcchhhHHHHHHHHHHHhcchhhcccc
Confidence 3444566777766654443 44455555554444333322 11 577888999999999999999999999999
Q ss_pred hhhch-hHHHHHHHHHHHHHHHHH-Hh---hc-chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHH
Q 008624 168 DFLGR-KRELIIAAVLYALGALTT-AY---AP-GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFI 241 (559)
Q Consensus 168 dr~Gr-r~~~~~~~~~~~i~~~~~-~~---~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 241 (559)
.|.|. |+.++.|.++..+++++. ++ .+ ..+.++++|++.|+|.| ......+|+++....++|.++++....+.
T Consensus 96 ~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~ 174 (488)
T KOG2325|consen 96 NKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGF 174 (488)
T ss_pred cccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHH
Confidence 99996 888899999999999998 43 23 67899999999999977 67788999999988999999999999988
Q ss_pred HHHHHHHHHHhhhhcCCC------------cchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHH
Q 008624 242 VLGILLGYFVGSFQINAV------------GGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQA 308 (559)
Q Consensus 242 ~~G~~~g~~~~~~l~~~~------------~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 308 (559)
.+|.++||.++..+.... +-+-.+-|+.+++.++.++.. +++.|.++-.
T Consensus 175 vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~------------------ 236 (488)
T KOG2325|consen 175 VLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI------------------ 236 (488)
T ss_pred HHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc------------------
Confidence 999999998877654311 012345667777777766655 4566644300
Q ss_pred HHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchh-HHHHHHHHHHH-HHhhCcchhhhchHHH
Q 008624 309 ISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLF-QQITGQPSVLYYAGPI 386 (559)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 386 (559)
.+.+...+ + +...-.+..+.+++. ...+.+.+..+ ..+.....-..+.+..
T Consensus 237 ----------~~~~~~~~---~--------------~~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~ 289 (488)
T KOG2325|consen 237 ----------IDKKKRSV---E--------------EEKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALT 289 (488)
T ss_pred ----------cccccccc---h--------------hhccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 00000000 0 000001111112211 12222222222 2222112122233444
Q ss_pred HHHcCCCCchhHHHHHHHHHHHHHHHHHH---HHHHh-hhcCCchhhhhhhHHHHHHHHHHHHHHhhcC-----------
Q 008624 387 LQSAGFSAAADATRVSVVIGVFKLVMTWI---AVAKV-DDLGRRPLLIGGVCGIALSLLLLSAYYKILG----------- 451 (559)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 451 (559)
....+...............+.+++...+ ..... .++.+|..+..++........+.......+.
T Consensus 290 m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~ 369 (488)
T KOG2325|consen 290 MVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYA 369 (488)
T ss_pred HHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeecccccccccccccccc
Confidence 44555554344444334444444333332 22222 2323444444443333333222211111100
Q ss_pred -----c----------hhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH
Q 008624 452 -----G----------FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV 516 (559)
Q Consensus 452 -----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 516 (559)
. ..+..+....++.+...........+.-+|...+..++++.|+.......+..++|.+...+..
T Consensus 370 ~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 370 GCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred CcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 0 0011111111111111111122234667888889999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhccc
Q 008624 517 FIHFSIKMVSTWFMILLFDWLVQFCRSCW 545 (559)
Q Consensus 517 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (559)
..|..+.+.+..+..++...++....++.
T Consensus 450 ~~g~~~v~~~~~~~~l~~~~l~~~~~~r~ 478 (488)
T KOG2325|consen 450 LSGPRPVWIILLCLLLVVAALWIVFLKRL 478 (488)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988888777766666665555444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=147.39 Aligned_cols=353 Identities=17% Similarity=0.153 Sum_probs=236.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-HHHHHHHHHHHHHHhhcc--h-hhHHHHHHHHhHHHHhhhhh
Q 008624 141 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI-IAAVLYALGALTTAYAPG--L-GVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 141 s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~-~~~~~~~i~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~ 216 (559)
+.+..+...++..+..++..|+.|.++|+.|+||..+ +...+..++.++..++++ + +..++...+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 5667889999999999999999999999999765544 556666666667777655 4 44555567888888888999
Q ss_pred HhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHh--hhhcC---------------CCcchHHHHHhhhHHHHHHHHH
Q 008624 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--SFQIN---------------AVGGWRYMYGLSAPLALLMGIG 279 (559)
Q Consensus 217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~--~~l~~---------------~~~~wr~~f~~~~~~~~~~~~~ 279 (559)
-.+++.+..++++-++..++-.....+|..+.-++. ..... ....=|..+.+.++.-++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998888887776555566655544432 11111 1115677788777777766664
Q ss_pred H-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCch
Q 008624 280 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 358 (559)
Q Consensus 280 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (559)
. +..++.++-. + ......... -++-+.+++++.+++++
T Consensus 216 m~~~v~~~~~~~-------------------------------~-~~~~~l~~g---------~k~L~~t~k~i~~~~~i 254 (438)
T COG2270 216 MILNVHDAEKIS-------------------------------S-PPPTALRNG---------FKELKSTFKEIRGRKNL 254 (438)
T ss_pred HHhccccccccc-------------------------------c-cchHHHHHH---------HHHHHHHHHHHhcccch
Confidence 4 4555533200 0 000000000 01112235566666655
Q ss_pred hHHHHHHHHHHHHHhhCcchhhhchHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHH
Q 008624 359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 437 (559)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 437 (559)
..++++.++ +.-+.+.+......+-. ++|++. .+..++.....+.+++|+++.|++.||+|.|+++..+.++..
T Consensus 255 ~~FLiA~~~----~~DGv~til~~~~~fg~~~~gls~-~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 255 VLFLIARFF----YIDGVNTILAMGGVFGAADLGLSS-TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS 329 (438)
T ss_pred HHHHHHHHH----HHhhHHHHHHHHHHHHHHHcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence 555544333 33344556666666665 688887 888899999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh
Q 008624 438 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF 517 (559)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 517 (559)
+.++..... ..........++. +.+........-++..+++|+++.++.+|+++..+...++.+|+..+.+.+.
T Consensus 330 ~~~~~~~~~-----~~~~~f~i~gll~-g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 330 IAALYLIFL-----EGELDFWILGLLV-GTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred HHHHHHHHc-----cccHHHHHHHHHH-HHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 766655542 1222222222223 3333344556778999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccc
Q 008624 518 IHFSIKMVSTWFMILLFDWLVQFCRSCW 545 (559)
Q Consensus 518 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (559)
.|....-....+..+...++.+...+..
T Consensus 404 Tg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 404 TGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred hcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 8875554444444444444444444444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-16 Score=152.63 Aligned_cols=331 Identities=21% Similarity=0.171 Sum_probs=231.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hchh-HHHHHHHHHHHHHHHHHHhhcc------hhhHHHHHHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRK-RELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY 206 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr----~Grr-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~ 206 (559)
+|+++..+|.+..+.-+--++.-|+.|.+.|| +||+ +.++.+.+-.++.+.++-.+++ ....++...+.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 89999999999999999999999999999994 7875 4566788888998888887764 44567778899
Q ss_pred hHHHHhhhhhHhHHHhhcCC-CCccchhhhHHHHHHHHHHHHHHHHhhhhcC----C--CcchHHHHHhhhHHHHHHHHH
Q 008624 207 GLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQIN----A--VGGWRYMYGLSAPLALLMGIG 279 (559)
Q Consensus 207 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~----~--~~~wr~~f~~~~~~~~~~~~~ 279 (559)
+++.......-.++..|+.+ ++||.+..+.-+.+.++|..+...+...+.. . ..||+....+.++++++..+.
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 99999888888999999884 6889999999999999997766655544432 1 237888888888887777665
Q ss_pred Hhc-cCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCch
Q 008624 280 MWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 358 (559)
Q Consensus 280 ~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (559)
.++ ..|.+. +..+ .+...+.+.+..+..+++|+.+
T Consensus 203 ~~~~v~ER~~----------------------------~~~~----------------~~~~~~~~~~~~~~~~~~Nrp~ 238 (467)
T COG2211 203 CFFNVKERVV----------------------------ETQP----------------TKTGVKLKLKDSFLLIFKNRPL 238 (467)
T ss_pred HHHHhhcccC----------------------------cccc----------------CcccccccHHHHHHHHHccchH
Confidence 543 444221 0000 0000011122234467788877
Q ss_pred hHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHH
Q 008624 359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 438 (559)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 438 (559)
+...+...+.......-.....+|..+. .+..+ ............+.+++.++..++.+|+|+|++..++.++.++
T Consensus 239 ~~~l~~~l~~~~~~~i~~s~~~yy~~y~---lg~~~-l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i 314 (467)
T COG2211 239 LLLLLMNLLLFIAFNIRGSIMVYYVTYV---LGDPE-LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAV 314 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeEEEE---cCChH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHH
Confidence 7666644444333332222223332222 23333 5566777777777778799999999999999999999999888
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCc-------chhhhHHHHHHHHHHHHHHHHHHhh
Q 008624 439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL-------RTRGRGISLAVLTNFGSNAIVTFAF 511 (559)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~i~~~~~ 511 (559)
+.+++.+.. .++.+..++..++...+. ....++.+++.+|..+- +..|...+....++-+|.+++..+.
T Consensus 315 ~~~~~~f~~---~~~~~l~~~~~~i~~~g~-~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 315 GYLLLYFTP---AGSVVLIVVALIIAGVGT-GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred HHHHHHhhc---CcchHHHHHHHHHHHHHh-hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 888887653 123333333333333333 34556888888887543 3467888999999999999999999
Q ss_pred HHhHHhhhh
Q 008624 512 SPLKVFIHF 520 (559)
Q Consensus 512 g~~~~~~g~ 520 (559)
|++.+..|+
T Consensus 391 g~~L~~~Gy 399 (467)
T COG2211 391 GWILGAIGY 399 (467)
T ss_pred HHHHHHcCC
Confidence 999988765
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=153.06 Aligned_cols=302 Identities=19% Similarity=0.232 Sum_probs=209.5
Q ss_pred HHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 008624 103 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 182 (559)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~ 182 (559)
+.+.++..+..++..+++...+..+.+. |+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|+++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErR-------F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~ 171 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERR-------FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVL 171 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhh-------cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhH
Confidence 4445555677777777777777777665 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh------------c-------c--------------------------------h-hhHHHHHHHHhHHH
Q 008624 183 YALGALTTAYA------------P-------G--------------------------------L-GVLLVGRLLYGLGI 210 (559)
Q Consensus 183 ~~i~~~~~~~~------------~-------~--------------------------------~-~~l~~~r~l~G~~~ 210 (559)
++++++++++- . + + ..++++.++.|+|.
T Consensus 172 m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~ 251 (735)
T KOG3626|consen 172 MGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGA 251 (735)
T ss_pred HHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCC
Confidence 99999998762 0 0 1 25677889999999
Q ss_pred HhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC------------------cchHHHHHhhhHH
Q 008624 211 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV------------------GGWRYMYGLSAPL 272 (559)
Q Consensus 211 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------------------~~wr~~f~~~~~~ 272 (559)
...++.+.+|+-|...+++-...+|+......+|.++|.++|+++...+ +-|..-|++.+.+
T Consensus 252 Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~ 331 (735)
T KOG3626|consen 252 TPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGAL 331 (735)
T ss_pred CCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876422 2477778888888
Q ss_pred HHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhh
Q 008624 273 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEV 352 (559)
Q Consensus 273 ~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (559)
.++..+.++++|.+..-. +.+...+..+..+.+++.. .......+ .-+.-....+++
T Consensus 332 ~~~~a~p~f~fPk~lp~~-------------~~~~~~~~~~~~k~~~~~~-~~~~~~~~---------~ikdfp~s~~~l 388 (735)
T KOG3626|consen 332 LLFSAVPLFFFPKELPKS-------------QKRKRARDLHVLKTESGGA-KSDKTFGK---------KIKDFPKSIKRL 388 (735)
T ss_pred HHHHHHHHHhCcccCccc-------------cccchhhhhcccccccccc-cCCcchhh---------hHHHHHHHHHHH
Confidence 888888888888753200 0000000001111110000 00000000 011123456778
Q ss_pred ccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHH-HHHHHHHHHHHHHHHhhhcCC--chh
Q 008624 353 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVV-IGVFKLVMTWIAVAKVDDLGR--RPL 428 (559)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~~~--~~~ 428 (559)
++||.+...+++..+- ...+..+..|+|-|++. ++.+. ..+..+... ..-+..+|.+++|++.+|+.- |..
T Consensus 389 l~N~if~~~~l~~~~~----~~~~~G~~tFlPKyLE~Qfg~sa-s~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~ 463 (735)
T KOG3626|consen 389 LSNPIFMLVVLASVIE----SLAITGYITFLPKYLETQFGISA-SLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGA 463 (735)
T ss_pred hcCchHHHHHHHHHHH----HHHHhhHHHhhHHHHHHHcCCCH-HHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHH
Confidence 8888766655444433 33445688899999976 66665 566666644 444556777889999998754 344
Q ss_pred hhhhhHHHHHH
Q 008624 429 LIGGVCGIALS 439 (559)
Q Consensus 429 ~~~~~~~~~~~ 439 (559)
..+..+...+.
T Consensus 464 a~~~~~~~~l~ 474 (735)
T KOG3626|consen 464 AKFVIVCSVLS 474 (735)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-13 Score=129.59 Aligned_cols=330 Identities=16% Similarity=0.120 Sum_probs=221.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhHHHH-HHHHHHHHHHHHHHh-----hc-------ch--h
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKRELI-IAAVLYALGALTTAY-----AP-------GL--G 197 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G-----rr~~~~-~~~~~~~i~~~~~~~-----~~-------~~--~ 197 (559)
++++..-.+.+.++..+... ..+.+|+.+|+.+ ||..++ .|.++...+..+..+ +. +. +
T Consensus 10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g 88 (403)
T PF03209_consen 10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG 88 (403)
T ss_pred hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence 88999999999998876554 6899999999999 886655 466666666555544 22 22 1
Q ss_pred --hHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHH-
Q 008624 198 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL- 274 (559)
Q Consensus 198 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~- 274 (559)
...+...+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++.++.+.+.+.+..-|..-.+.....+
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA 168 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 33445677899999999999999999999999999999999999999999999999988877444444333332222
Q ss_pred -HHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhc
Q 008624 275 -LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 353 (559)
Q Consensus 275 -~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (559)
+..++..+-.|... .. .. ...+.++......++++.
T Consensus 169 ~~l~~ia~wg~E~r~-~~--------------------------~~----------------~~~~~~~~~f~~a~~~~~ 205 (403)
T PF03209_consen 169 LLLNLIALWGQEPRR-SR--------------------------RA----------------AAAERPRPPFREAWRQVW 205 (403)
T ss_pred HHHHHHHHHhcccCC-cc--------------------------cc----------------cCCCCCCccHHHHHHHHH
Confidence 22222222222110 00 00 000011122234466777
Q ss_pred cCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh-hcCCchhhhhh
Q 008624 354 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD-DLGRRPLLIGG 432 (559)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~ 432 (559)
.+|..+++.+..++..+..+.--..+- |+=-+.+|++. .+...+....+.+.++|-...+++.. |.++++...++
T Consensus 206 ~~~~a~~f~~fl~l~t~a~~~QD~iLE---Pygg~Vfgmsv-~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G 281 (403)
T PF03209_consen 206 ASPQARRFFVFLFLGTLAFFMQDVILE---PYGGEVFGMSV-GETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALG 281 (403)
T ss_pred hCCChhHHHHHHHHHHHHHHhhHHHcC---CchhHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 888877777665555554332111111 22223456766 77888888899999999988888766 67777777788
Q ss_pred hHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhH
Q 008624 433 VCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 512 (559)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g 512 (559)
.....+++.++...... .+.+......++++.+.+...... .+...++..++..|..+|.-.....+...++..+.|
T Consensus 282 ~~~~~~~f~lii~a~~~--~~~~~~~~~~~l~G~g~G~f~vga-ls~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG 358 (403)
T PF03209_consen 282 CLLGALAFALIILAGPL--GSPWLFRPGVFLLGLGNGLFTVGA-LSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG 358 (403)
T ss_pred HHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHhhhHHHHHH-HHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777766654432 345555555555555554433333 356667777899999999999999998888988888
Q ss_pred HhHHhh
Q 008624 513 PLKVFI 518 (559)
Q Consensus 513 ~~~~~~ 518 (559)
.+.|..
T Consensus 359 ~~~D~~ 364 (403)
T PF03209_consen 359 ALRDLV 364 (403)
T ss_pred HHHHHH
Confidence 887753
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-18 Score=175.43 Aligned_cols=382 Identities=20% Similarity=0.191 Sum_probs=3.0
Q ss_pred HHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 008624 108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 187 (559)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~ 187 (559)
+..+......+++...+..+.+. |+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.+++++++
T Consensus 10 ~~~~~q~~~~g~~~~~lttiErR-------F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~ 82 (539)
T PF03137_consen 10 LLGLFQMMVSGYVNSSLTTIERR-------FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGS 82 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHH
Confidence 33344455556666666666655 99999999999999999999999999999999888888899999999999
Q ss_pred HHHHhh----c----------------------------------------------chhhHHHHHHHHhHHHHhhhhhH
Q 008624 188 LTTAYA----P----------------------------------------------GLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 188 ~~~~~~----~----------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+++++= + -+..++++.++.|+|....++++
T Consensus 83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG 162 (539)
T PF03137_consen 83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG 162 (539)
T ss_dssp ---------------------------------------------------------------------SSS--------
T ss_pred HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence 887650 0 03568889999999999999999
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC---------------------cchHHHHHhhhHHHHHH
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV---------------------GGWRYMYGLSAPLALLM 276 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---------------------~~wr~~f~~~~~~~~~~ 276 (559)
.+|+-|..++++-+.++|++.+...+|.++|.++|+.+...+ +.|..-|++.+++.++.
T Consensus 163 ~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 163 ITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876421 13666677778887777
Q ss_pred HHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCC
Q 008624 277 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 356 (559)
Q Consensus 277 ~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (559)
.+.++++|+.-+-.. +..++.+. ++.+.+.. +. .+..+...........+.-....+++++||
T Consensus 243 aipl~~FPk~lp~~~-----------~~~~~~~~--~~~~~~~~-~~---~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np 305 (539)
T PF03137_consen 243 AIPLFFFPKKLPGTS-----------ERQEEKES--SERKEEDS-DK---DSFKDPKSKKSFGKSIKDFPKALKRLLTNP 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCccCCCcc-----------cccchhhh--hhcchhhh-hh---hcccccccccchhhhhhhHHHHHHHHhcCh
Confidence 777777776421000 00000000 00000000 00 000000000000011223345567788888
Q ss_pred chhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHH-HHHHHHHHHHHHHHHHhhhcCC--chhhhhh
Q 008624 357 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSV-VIGVFKLVMTWIAVAKVDDLGR--RPLLIGG 432 (559)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~~--~~~~~~~ 432 (559)
.+....++.... ......+..|.|.|++. ++.++ ..+.++.. +...++++|.+++|++.+|++- |..+...
T Consensus 306 ~f~~~~la~~~~----~~~~~G~~tF~pKylE~QF~~sa-s~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~ 380 (539)
T PF03137_consen 306 VFMCLILAGVFE----SFIVSGFATFLPKYLESQFGLSA-SQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFC 380 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHH
Confidence 666555444333 33445678889999876 56665 45555543 4444677888999999998753 4444333
Q ss_pred hHHHHHHHHHHH---HH-----------Hhh-------c---------------------C----c--hhH-HHHHHHHH
Q 008624 433 VCGIALSLLLLS---AY-----------YKI-------L---------------------G----G--FPL-VAVSALLL 463 (559)
Q Consensus 433 ~~~~~~~~~~~~---~~-----------~~~-------~---------------------~----~--~~~-~~~~~~~~ 463 (559)
.+...++.+.+. +. ... . + + ... ..++..++
T Consensus 381 ~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~ 460 (539)
T PF03137_consen 381 IVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFI 460 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHH
Confidence 333333332211 00 000 0 0 0 011 12222222
Q ss_pred HHHHhhcccccccceeecccCCcchhhhHHHHHHHH-HHHHHHHHHHhhHHhHHhhh
Q 008624 464 YVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKVFIH 519 (559)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~~~g~~~~~~g 519 (559)
..........|.. ..+-..+|+++|+.+.|+...+ +-+|.+-+|.++|.+.|..-
T Consensus 461 ~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 461 LSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 2333333444444 5566888999999999999876 56677789999999999753
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-16 Score=158.11 Aligned_cols=176 Identities=14% Similarity=0.090 Sum_probs=137.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH---HHhhcchhhHHHHHHHHhHHHHhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT---TAYAPGLGVLLVGRLLYGLGIGLAM 214 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~ 214 (559)
+|.+..+.++..+...++..++.+++|+++||+|||++++.+.++..++.+. ...+++...+++++++.|++.+...
T Consensus 281 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 360 (490)
T PRK10642 281 LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFT 360 (490)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888889999999999999999999999988887654443332 2234567788889999998887777
Q ss_pred hhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHh
Q 008624 215 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 294 (559)
Q Consensus 215 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~ 294 (559)
.....++.|.+|++.|++++++......++..++|.+.+++.+..++|+.++++..+++++.++..+++||+|+|+..+.
T Consensus 361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~ 440 (490)
T PRK10642 361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA 440 (490)
T ss_pred HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 77888899999999999999975444556667888888888776546888877777777777777778899998765431
Q ss_pred hcCCCchhhHHHHHHHHHHhhcc
Q 008624 295 VQGKGSLQEYKEQAISALGKLRR 317 (559)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~ 317 (559)
. +.+++.+++++.++++++
T Consensus 441 ~----~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 441 T----PAASDIQEAKEILVEHYD 459 (490)
T ss_pred c----ccccchhhHHHHhhcccc
Confidence 1 224778889999988873
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=125.58 Aligned_cols=136 Identities=31% Similarity=0.444 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCC
Q 008624 149 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ 228 (559)
Q Consensus 149 ~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 228 (559)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc-cCC
Q 008624 229 IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-LPP 285 (559)
Q Consensus 229 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e 285 (559)
+|++.+++.+....+|..+++.+++.+.+.. +|++.|++.+++.++..+..++ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999988876 8999999988887777665544 444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-13 Score=132.28 Aligned_cols=321 Identities=17% Similarity=0.170 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCcc
Q 008624 151 GSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR 230 (559)
Q Consensus 151 ~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r 230 (559)
...+...+.++..|.++||+|||..+....+...+..+...+.. +|. ++.--+.|. .+.....+.++++|....++|
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~-~~~~~l~g~-~~~~~s~~~a~vadis~~~~R 146 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWF-FLLLGLSGG-FSAIFSVGFAYVADISSEEER 146 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHH-hhhcccccc-hhhhhhhhhhheeeccchhHH
Confidence 34667888999999999999999999999999888888777755 443 332222222 345677889999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHH
Q 008624 231 GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAI 309 (559)
Q Consensus 231 ~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 309 (559)
...+|+.......+..++|.+++.+.... |.-.+|++..+..++..+.. +++||+-. ++++..
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl~--------------~~~~~~- 210 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESLQ--------------EKERSD- 210 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhccccccC--------------cccccc-
Confidence 99999999999999999999999988886 88889999998888877755 56787632 000000
Q ss_pred HHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcc-hhhhchHHHHH
Q 008624 310 SALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP-SVLYYAGPILQ 388 (559)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 388 (559)
...++......... . ...........-.++....+.....+.......+.. ...+|+ -.
T Consensus 211 ---~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl---~~ 270 (463)
T KOG2816|consen 211 ---ATLRELTPGSLDSS-H-------------VADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYL---KA 270 (463)
T ss_pred ---ccccccCCCcccch-h-------------hhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEE---ee
Confidence 00000000000000 0 000000011111112222222222222232322222 122221 13
Q ss_pred HcCCCCchhHHHHHHHHHHHHHHHHHHHH-HHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 008624 389 SAGFSAAADATRVSVVIGVFKLVMTWIAV-AKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGC 467 (559)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (559)
..+++. ...+.+.+.......++.++.. .+...++.++.+..|+....+..+..++.. ..|..+....+. .
T Consensus 271 ~f~w~~-~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-----~~w~~~~~~v~~--~ 342 (463)
T KOG2816|consen 271 KFGWNK-KEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-----ETWMMFAAGVVV--A 342 (463)
T ss_pred ecCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-----cchhhhHHHHHH--H
Confidence 467776 7788778888888888887766 777888988888888888888888888743 344433333222 2
Q ss_pred hhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhh
Q 008624 468 YQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFI 518 (559)
Q Consensus 468 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~ 518 (559)
......|...+..+...+++++|.+.++...+..+.+.++|.+.+.+...+
T Consensus 343 ~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 343 LAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 233344566678888889999999999999999999999999999987654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-13 Score=133.89 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=126.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+|.+..+.+++.+...++..++.+++|+++||+|||+.+..+.+...+........++.+.+++.+++.+++.|...+..
T Consensus 247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~ 326 (393)
T PRK15011 247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG 326 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999888888888899999999999999998888777666665555667888888889999998888877888
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCC
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 285 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 285 (559)
..+..|.+|+ +|++++++++....+|..+|+.+++.+.+.. +|+..|++.+++.++.++..++.||
T Consensus 327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888999875 5999999999999999999999999998877 9999999988888887777777654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=143.62 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhc
Q 008624 145 LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET 224 (559)
Q Consensus 145 ~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 224 (559)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++++++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777899999999999999999999999999999999999999999988899999999998888999999999999
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCch
Q 008624 225 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 287 (559)
Q Consensus 225 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 287 (559)
+|.++|++++|+..+...+|.++||++++.+... +...+|++.+++.++..++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999987664 456788888888887777777788864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=138.10 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=129.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
.+.+..+.|++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+..
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hHHHhhcCCCCccchhhhH-HHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHh-ccCC
Q 008624 218 PLYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPP 285 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 285 (559)
..++.|.+|++.|+...+. ++....+|.++++.++|++.+.. ||+..|++.+++.++..++.+ .+++
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999887665 67778999999999999999987 899999998888776655443 4444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=137.35 Aligned_cols=147 Identities=18% Similarity=0.301 Sum_probs=126.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc----chhhHHHHHHHHhHHHHhhhh
Q 008624 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 140 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~ 215 (559)
++.+..+.+.++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999988877776632 246677889999999998889
Q ss_pred hHhHHHhhcCCCCccchhhhHHH-HHHHHHHHHHHHHhhhhcCCC-----cchHHHHHhhhHHHHHHHHHH-hccCCc
Q 008624 216 GAPLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGIGM-WSLPPS 286 (559)
Q Consensus 216 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~-----~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 286 (559)
....++.|++|+++|++++++.+ ...++|.++||+++|.+.+.. .||+..|++.+++.++..++. ++++|+
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999997 678999999999999988764 269999999888877766655 456664
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=134.28 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=123.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHhHHHHhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL--GVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~ 215 (559)
++.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++.+++.++..+.++. ..+++..++.|++.+...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 314 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS 314 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence 78888899999999999999999999999999999999999999999988888776643 3345667888988888888
Q ss_pred hHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHH
Q 008624 216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 277 (559)
Q Consensus 216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 277 (559)
....++.|.+|+++|+++.|+.+....+|..++|.+++.+.+.. ||++.|++.+++.++.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTSL 375 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999998887 89999998887776643
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-13 Score=129.94 Aligned_cols=145 Identities=37% Similarity=0.512 Sum_probs=136.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH-HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKR-ELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
+|.+..+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.++..+.++.+.+++..++.|++.+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 285 (352)
T cd06174 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA 285 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchh
Confidence 4889999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc
Q 008624 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 283 (559)
Q Consensus 217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 283 (559)
..+++.|..|+++|++.+++.+....+|..+++.+.+.+.+.. +|++.|++.+++.++..+..+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999999998877 99999999999988877766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=128.04 Aligned_cols=345 Identities=17% Similarity=0.106 Sum_probs=210.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhHHHHHHHHHHHHHHHHHHhh----cchhhHHHHHHHHhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKRELIIAAVLYALGALTTAYA----PGLGVLLVGRLLYGL 208 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G-----rr~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~ 208 (559)
+|+++++...+.+...+...+ -+++|.++|-+- ||+-++++.++..++.+..+.. .+.....++-++..+
T Consensus 20 l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~ 98 (433)
T PF03092_consen 20 LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF 98 (433)
T ss_pred cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 999999999988888877765 567899999763 5556667777776666655553 356677777788999
Q ss_pred HHHhhhhhHhHHHhhcCC--CCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCc
Q 008624 209 GIGLAMHGAPLYIAETCP--SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 286 (559)
Q Consensus 209 ~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 286 (559)
|.+....++-+++.|... ++.||...+.......+|.+++..++|.+.+.. ++|..|.+.+++.++..+..+++.|+
T Consensus 99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999883 344778888888999999999999999998887 89999999888877776655544442
Q ss_pred hHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHH-HH
Q 008624 287 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII-GG 365 (559)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 365 (559)
.+ ... .++. .....+ +.+.... ..++.....++.++.+..+...+ ..
T Consensus 178 ~~-~~~------------~~~~----~~~~~~---------~~~~~~~------~~~~~~~~l~~~~~~~~i~~~~~~~~ 225 (433)
T PF03092_consen 178 RK-VRP------------ADEV----FSFGKE---------EVPCLFG------SFREQLSELWRALQQRAIWQPILFFI 225 (433)
T ss_pred cc-ccc------------cchh----hccccc---------ccchhhH------HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 000 0000 000000 0000000 00111223455666665555444 22
Q ss_pred HHHHHHHhhCcch-hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHH
Q 008624 366 GLVLFQQITGQPS-VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 444 (559)
Q Consensus 366 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 444 (559)
++..+... .... ..++....+...++++ ...+.+..+..++.++|..+......+..-|+++....++..+..+.-.
T Consensus 226 ~~~~~~~~-~~~a~~fy~~~~~~~gp~fs~-~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~ 303 (433)
T PF03092_consen 226 FFFNLPPS-ISSASSFYFQTDALGGPHFSP-SFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDL 303 (433)
T ss_pred HHHHhccC-CCCccEEEEEeccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccE
Confidence 22211111 1112 2222211111112444 5566666666667777776666655555656666555544433322211
Q ss_pred HH-Hh----hcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh
Q 008624 445 AY-YK----ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH 519 (559)
Q Consensus 445 ~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g 519 (559)
.. .. ..-.+.+..+.-.++........+.|.. .+++|+.|+..-|+.+++..++.++|..++..+...+.+..|
T Consensus 304 ~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 304 LLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred EEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 10 00 0001123333333444444445555554 678899999999999999999999999999999998888776
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.5e-13 Score=131.02 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhh
Q 008624 144 QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAE 223 (559)
Q Consensus 144 ~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 223 (559)
+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666778888999999999999999999999999999989888888888898888999999999999888888888889
Q ss_pred cCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCC
Q 008624 224 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 285 (559)
Q Consensus 224 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 285 (559)
.+|+++|+++.++++....+|..+++.+.+.+.+.. ||++.|++.+++.++..+..+++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999988877 8999999988888877766655544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-13 Score=131.42 Aligned_cols=147 Identities=22% Similarity=0.193 Sum_probs=127.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
.|.+..+.+++.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+..++.|++.+...+..
T Consensus 250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (406)
T PRK11551 250 QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVL 329 (406)
T ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHH
Confidence 68899999999999999999999999999999999999988877777777777778888888888889999888888999
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccC
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 284 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 284 (559)
.+++.|.+|+++|++++|+.+....+|..+||.+++.+.+...+|...+++.+...++..++.+++.
T Consensus 330 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 330 YALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988765677777777766666655555443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-11 Score=109.68 Aligned_cols=233 Identities=15% Similarity=0.170 Sum_probs=152.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+|.++.|++.+....+...++..++.|.++||+|||+.-++.+++.+++++ +-..++++.++++|++.|++....+.+-
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999986 4567999999999999999999999888
Q ss_pred hHHH-hhcC----CCCccchhhhHHH-HHHHHHHHHHHHHhhhhcCCCc-chHHHHHhhhHHHHHHHHHHh-ccCCchHH
Q 008624 218 PLYI-AETC----PSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMW-SLPPSPRW 289 (559)
Q Consensus 218 ~~~i-~~~~----~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~ 289 (559)
-++. .|.- |++..+..++... ...++-.+++.+++-.+.+..+ |-..+|....++.++..+++. ..+|...
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg- 221 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG- 221 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC-
Confidence 7765 3432 2222233333222 2233334445555555555431 347788888888777766554 3455321
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHH
Q 008624 290 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 369 (559)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (559)
+..... +. .+.-...++.++++++...+-+ ...
T Consensus 222 ----------------------------~~~~~~----~~------------~~~~~~a~~~i~~d~ril~LG~---~qs 254 (354)
T PF05631_consen 222 ----------------------------DTSSSS----SL------------SGSFREAWRAILSDPRILLLGL---IQS 254 (354)
T ss_pred ----------------------------Cccccc----ch------------HHHHHHHHHHHHcCchhHHHHH---HHH
Confidence 000000 00 0000112344555554443333 334
Q ss_pred HHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008624 370 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 422 (559)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 422 (559)
+.....+..+..|.|.+- . .+.....|++.....++.++|+.+..++..+
T Consensus 255 lFE~smy~FVflWtPaL~-~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 255 LFEGSMYLFVFLWTPALD-P--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHheeeeeceec-C--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444556777888765 2 2222468899999999999999888766554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=126.36 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=126.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+..++..+.++.+.+++.+++.|++.+...+..
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 309 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG 309 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999888887888889999999999999999988887777666666677888888889999999999888888
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCC
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 285 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 285 (559)
..++.|..|+ ++++++++++....+|..++|.+++.+.+.. ||+..|++.+++.++..++..+++|
T Consensus 310 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 310 MLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHheecC
Confidence 8999999875 5679999999999999999999999998887 8999999999888887777666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-12 Score=125.79 Aligned_cols=141 Identities=15% Similarity=0.048 Sum_probs=128.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+|.++.++|++.+...++..++.++++++.||+|+|+.+.++.++.++..++.+++++.+.+++.+++.|++.+...+..
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~ 314 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCCCccchhhhHHH-HHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHh
Q 008624 218 PLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 281 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 281 (559)
..++.+. |+++|++..++++ ...++|.++|+.++|.+.+.. |+ ..|++.++++++.+++.+
T Consensus 315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHHH
Confidence 9999998 9999999999986 578899999999999999988 76 667777777776555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=128.71 Aligned_cols=137 Identities=21% Similarity=0.201 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhc
Q 008624 145 LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET 224 (559)
Q Consensus 145 ~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 224 (559)
.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666778888899999999999999999999999999999988888888888888999999999998888888899999
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 225 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 225 ~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
+|+++|++++++++....+|..+||.+++.+.+.. ||++.|++.+++.++..++.++
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987 8999999998888777665543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=129.45 Aligned_cols=138 Identities=21% Similarity=0.298 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhh
Q 008624 144 QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAE 223 (559)
Q Consensus 144 ~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 223 (559)
..+.+.+++.++..++.+++|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+...+++.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 45677777888889999999999999999999999988888888888888888999999999999999999999999999
Q ss_pred cCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 224 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 224 ~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
..++++||+.++++.....+|..+||.+++.+.+.. +|++.|++.+++.++..+..++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887 8999999999888877665543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-10 Score=108.67 Aligned_cols=347 Identities=14% Similarity=0.122 Sum_probs=211.7
Q ss_pred ccCChhHHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLG-LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g-~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++.-+.++...+-+..++-|++.+. ..+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence 577887773 445555566788889999999999999999999999999999999999999999999999999874 778
Q ss_pred HhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC-cchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhh
Q 008624 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV 295 (559)
Q Consensus 217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 295 (559)
-.+++-...|+++-.++.+...++.-+|..++.++|-.+.... .+.+...++......+.++..+++|..++-...++.
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~ 193 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK 193 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc
Confidence 8899999999999899999999999999999999988777632 256666677766666666777778776542111100
Q ss_pred cCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhc-----ccccccccchhhhccCCchhHHHHHHHHHHH
Q 008624 296 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSS-----YTDEKSEGSFLEVFQGPNLKAFIIGGGLVLF 370 (559)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (559)
.... .+ .++.+.++.++..+.. .+..++.... ..-..-.+.+++..+++.+...-+-.++.
T Consensus 194 ~~~~-----~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~a-- 259 (412)
T PF01770_consen 194 PPAE-----QD-----ANESESDKMNESPESS--SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFA-- 259 (412)
T ss_pred Cccc-----cc-----cccccccccccccccc--cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH--
Confidence 0000 00 0000000000000000 0000000000 00011123345566666555443322222
Q ss_pred HHhhCcchhhhchHHHHHHcC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhH--HHHHHHHHHHHH
Q 008624 371 QQITGQPSVLYYAGPILQSAG--FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC--GIALSLLLLSAY 446 (559)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~--~~~~~~~~~~~~ 446 (559)
.+++..+..|...+.++.. -....-.|.+-+...+.+.++.+..|++..++.+...+..+.. +.+..++++..
T Consensus 260 --tcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~- 336 (412)
T PF01770_consen 260 --TCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF- 336 (412)
T ss_pred --HhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2333446677777777761 1122456777777778888888888988555555444433332 22333333332
Q ss_pred HhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHH
Q 008624 447 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 507 (559)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 507 (559)
.++-|...+..+++...+.+...... ..++.....+.-|..+|+.+++..+-..+.
T Consensus 337 ----t~~Iwv~Y~~yIif~~~y~fliTiA~-~qIA~~l~~e~yaLVFGiNtf~Al~LQtil 392 (412)
T PF01770_consen 337 ----TGNIWVCYAGYIIFRSLYMFLITIAS-FQIAKNLSEERYALVFGINTFVALVLQTIL 392 (412)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence 24566666666777776665444333 334444456777888888776655544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=123.42 Aligned_cols=143 Identities=24% Similarity=0.199 Sum_probs=108.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH--HHH------HHHHHHHHHHHHHHhhcchhhHHHHHHHHhHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKR--ELI------IAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 209 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~--~~~------~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 209 (559)
+|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+.++..+........++.+..+...++.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (399)
T TIGR00893 246 RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFG 325 (399)
T ss_pred hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 7888999999999999999999999999999999996 111 11111111111222223444444444455555
Q ss_pred HHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHh
Q 008624 210 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 281 (559)
Q Consensus 210 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~ 281 (559)
.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..++|+..|++.++..++..+..+
T Consensus 326 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 326 LG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 44 788999999999999999999999999999999999999999998872399999988888777665543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=125.78 Aligned_cols=144 Identities=17% Similarity=0.056 Sum_probs=113.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH--HHhhcchhhHHHHHHHHhHHHHhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT--TAYAPGLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~r~l~G~~~g~~~~ 215 (559)
+|++..+.++..+.+.++..++.+++|+++||+|||+.++....+..++..+ ....++.+.+.+.+++.|++......
T Consensus 289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 368 (467)
T PRK09556 289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQL 368 (467)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHH
Confidence 7999999999999999999999999999999999998776655444443322 23345666777888888865444443
Q ss_pred hHhHHHhhcCCCCccchhhhHHHHHHHH-HHHHHHHHhhhhcC------------CCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 216 GAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQIN------------AVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~------------~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
.....+.|.+|+++||.+.|+.+....+ |..++|.+.|.+.+ .. +|+..|++.++..++..+..++
T Consensus 369 ~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 369 LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT-GWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccccc-ChHHHHHHHHHHHHHHHHHHHH
Confidence 4446677999999999999999988886 77999999999988 44 7999999887777776655543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=128.41 Aligned_cols=141 Identities=14% Similarity=0.170 Sum_probs=120.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHH--HHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL--GRKRELII--AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~--Grr~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 213 (559)
+|.+..+.+++.++..++..++.++.|+++||. ++|+...+ +.++.+++.+++.+.++++.+++.+++.|++.+..
T Consensus 271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~ 350 (455)
T TIGR00892 271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV 350 (455)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH
Confidence 788999999999999999999999999999973 44443333 34444555566677889999999999999999999
Q ss_pred hhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHH
Q 008624 214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 278 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~ 278 (559)
.+...+++.|.+|++++++.+++++....+|.++||.+++.+.+..++|++.|++.+++.++..+
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 351 GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999988775799999998887666544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=121.75 Aligned_cols=146 Identities=16% Similarity=0.069 Sum_probs=125.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+|++..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+..++....++.+.+.+..++.|++.+...+..
T Consensus 236 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 315 (394)
T PRK03699 236 FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTI 315 (394)
T ss_pred cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999988888777777777777888878888889999888888888
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCC
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 285 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 285 (559)
.++..|..+ +++++..+.......+|..++|.+.+.+.+.. ||+..+++.+++.++..+....++.
T Consensus 316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 316 ITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-GLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-CchhhhhhhHHHHHHHHHHHHHHHH
Confidence 888888775 44678888888899999999999999998887 8999999988888777666555543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=126.20 Aligned_cols=137 Identities=27% Similarity=0.210 Sum_probs=112.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH--HHHHh--hcchhhHHHHHHHHhHHHHhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA--LTTAY--APGLGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~ 213 (559)
+|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+++..++.|++.+..
T Consensus 250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 329 (394)
T TIGR00883 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY 329 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999998776555444433 22222 256777778889999999899
Q ss_pred hhhHhHHHhhcCCCCccchhhhH-HHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHH
Q 008624 214 MHGAPLYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 274 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~ 274 (559)
.+...+++.|.+|+++|++++++ .+.+..+|..++|.+++.+.+..+.|++.++..++..+
T Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 99999999999999999999998 45667789999999999999887349888777665554
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=121.88 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=120.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
.|.+.++.+++.+.+.++..+++++.|++.||+|+|+++..+.++.+++.+... . ...+....++.|++.+...|..
T Consensus 230 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~ 306 (381)
T PRK03633 230 QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVA 306 (381)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHH
Confidence 678889999999999999999999999999999999999888888877765543 2 2344567788888888888999
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 283 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 283 (559)
.+++.|..|+++++...+.+....++|.++||.++|.+.++. +|++.|++.+.+.++..+..++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888888888888899999999999999999987 89999999888887666555543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=122.26 Aligned_cols=164 Identities=10% Similarity=0.050 Sum_probs=123.5
Q ss_pred HHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHH
Q 008624 367 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 446 (559)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (559)
+.++..+.....+..+.|.+.++.+.+. .+.+++.....++..++.++.|++.||+|||+.+.++.++.+++.+++...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 108 (434)
T PRK11663 30 LGYALFYFTRKSFNAAMPEMLADLGLSR-SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS 108 (434)
T ss_pred HHHHHHHHhhhhHHHhhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 3333333333345677888889999887 788999999999999999999999999999999999988888887766653
Q ss_pred HhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHH
Q 008624 447 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVS 526 (559)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~ 526 (559)
.+.+..+...++.+.+.+.. .+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+..||.+.+..
T Consensus 109 -----~~~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 109 -----SSLWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred -----hHHHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 22333333333333333333 344557888999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHH
Q 008624 527 TWFMILLFDWL 537 (559)
Q Consensus 527 ~~~~~~~~~~~ 537 (559)
.++..++..++
T Consensus 183 ~~i~~~~~~~~ 193 (434)
T PRK11663 183 AGIIAIVVGLF 193 (434)
T ss_pred HHHHHHHHHHH
Confidence 66554444333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-11 Score=120.16 Aligned_cols=162 Identities=17% Similarity=0.016 Sum_probs=121.9
Q ss_pred chhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHH
Q 008624 377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456 (559)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (559)
.......|.+.++.+.++ .+.++......++..++.++.|++.||+|||+.+..+.++..++.+.+... ++.+.
T Consensus 22 ~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~ 95 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPA-SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----NNIET 95 (385)
T ss_pred HHhcccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHH
Confidence 334445677788888887 789999999999999999999999999999999999888888877776553 22333
Q ss_pred HHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHH
Q 008624 457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDW 536 (559)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 536 (559)
.....++.+.+. ....+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||...+...+...++..+
T Consensus 96 ~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 96 LLVLRFVQAFGA-SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHcch-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 333333333333 2333455578899999999999999999999999999999999999999998888776665555544
Q ss_pred HHHHhhccc
Q 008624 537 LVQFCRSCW 545 (559)
Q Consensus 537 ~~~~~~~~~ 545 (559)
+.....++.
T Consensus 175 ~~~~~~~~~ 183 (385)
T TIGR00710 175 LIFFILPET 183 (385)
T ss_pred HHHHhCCCC
Confidence 444444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-12 Score=126.47 Aligned_cols=132 Identities=18% Similarity=0.208 Sum_probs=111.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH-HHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGAL-TTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
+|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++.++..+ +....++.+.+.+..++.|++.+...+.
T Consensus 269 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (405)
T TIGR00891 269 LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGI 348 (405)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhh
Confidence 788999999999999999999999999999999999999888776643333 3344566777777778888877777888
Q ss_pred HhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhh
Q 008624 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLS 269 (559)
Q Consensus 217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~ 269 (559)
..+++.|.+|+++|++++|+.+....+|..++|++++.+.+..+.|+..+...
T Consensus 349 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 349 LPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 88999999999999999999999999999999999999999873387766553
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=121.14 Aligned_cols=184 Identities=10% Similarity=-0.111 Sum_probs=128.1
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 008624 349 FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 428 (559)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 428 (559)
++.+.+++.++...+...+..+.. .......|.+.++.+.+. .+.++......++.+++.++.|+++||++||+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~-~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~ 84 (417)
T PRK10489 10 LSLLKTHPAFRAVFIARFISIFGL----GLLGVAVPVQIQMMTGST-LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL 84 (417)
T ss_pred HHHHHhCCChhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE
Confidence 334456677776665544444433 235566777778877765 789999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHH
Q 008624 429 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 508 (559)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 508 (559)
+..+..+.+++.+.+...........+..++..++.+.+.+. ..+....++.|.+|+++|+++.++.+...++|..++|
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 163 (417)
T PRK10489 85 ILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSL-GVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP 163 (417)
T ss_pred EEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence 888877777766555432111112223333333333333222 2234446788889999999999999999999999999
Q ss_pred HhhHHhHHhhhhhHHHHHHHHHHHHHHHHH
Q 008624 509 FAFSPLKVFIHFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 509 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (559)
.+.+.+.+..|+.+.+...++..++..++.
T Consensus 164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 164 ALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999898888777665555444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-11 Score=119.22 Aligned_cols=155 Identities=14% Similarity=0.004 Sum_probs=119.6
Q ss_pred hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHH
Q 008624 379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 458 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (559)
.....|.+.++++.+. .+.++......++..++.+..|++.||+|||+.+..+.++.+++.+.+... ++.+..+
T Consensus 28 ~~~~~~~l~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~ 101 (390)
T PRK03545 28 PVGLLSDIAQSFHMQT-AQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----WNFTVLL 101 (390)
T ss_pred HHcchHHHHhHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----ccHHHHH
Confidence 3345678888899887 788999999999999999999999999999999999988888887776653 2333333
Q ss_pred HHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHH
Q 008624 459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (559)
+.-++.+.+. ....+....++.|.+|+++|++++|+......+|..++|.+.+.+.+..||.+.+...++..++..++.
T Consensus 102 ~~r~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 102 ISRIGIAFAH-AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 333445557788999999999999999999999999999999999999999998888776665554444
Q ss_pred HH
Q 008624 539 QF 540 (559)
Q Consensus 539 ~~ 540 (559)
..
T Consensus 181 ~~ 182 (390)
T PRK03545 181 IK 182 (390)
T ss_pred HH
Confidence 33
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.3e-11 Score=112.77 Aligned_cols=176 Identities=16% Similarity=0.083 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHH
Q 008624 361 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 440 (559)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 440 (559)
.++...+..|...+........+|.+-++++.+. ..+|...+.+..+..+++++...+.||+.||++++....+..++.
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~-~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n 92 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSE-GAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN 92 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 3444444555554445557778899999999998 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhh
Q 008624 441 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHF 520 (559)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~ 520 (559)
++..+. .++..+...=+..+.....+.++......++.|+++|++++++..+...+...+|.++..++-|.+||
T Consensus 93 ~l~alA------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW 166 (394)
T COG2814 93 LLSALA------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW 166 (394)
T ss_pred HHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence 988873 23333333333333333445557778999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 008624 521 SIKMVSTWFMILLFDWLVQFCRS 543 (559)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~ 543 (559)
...|+....+.++..+..+...+
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999988888877776666666
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-11 Score=119.14 Aligned_cols=154 Identities=8% Similarity=-0.010 Sum_probs=113.9
Q ss_pred chhhhchHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhH
Q 008624 377 PSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 455 (559)
Q Consensus 377 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (559)
.....+.+.+++ +.|.+. .+.++..+...++.+++.++.|+++||+|||+.+..+.++..++.+++.+. ++.+
T Consensus 24 ~~~~~~l~~~l~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~~ 97 (395)
T PRK10054 24 GATLPFMTIYLSRQYSLSV-DLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-----NNVT 97 (395)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----hHHH
Confidence 345666777774 578877 889999999999999999999999999999999988888777777666543 2233
Q ss_pred HHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHH
Q 008624 456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFD 535 (559)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 535 (559)
..+...++.+.... ...+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .|+...+...+++.++..
T Consensus 98 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~ 175 (395)
T PRK10054 98 LVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPL 175 (395)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHH
Confidence 33333333333222 3344556778899999999999999999999999999999998875 688877776665555444
Q ss_pred HHH
Q 008624 536 WLV 538 (559)
Q Consensus 536 ~~~ 538 (559)
++.
T Consensus 176 i~~ 178 (395)
T PRK10054 176 VFI 178 (395)
T ss_pred HHH
Confidence 333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-11 Score=117.50 Aligned_cols=148 Identities=18% Similarity=0.072 Sum_probs=116.2
Q ss_pred hhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHH
Q 008624 380 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVS 459 (559)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (559)
....|.+.++.+.++ .+.++......++..+++++.|++.||+|||+.+..+.++.+++.++.... ++.+..++
T Consensus 40 ~~~l~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~ 113 (394)
T PRK10213 40 VSLLTPMAQDLGISE-GVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----NSFSLLLI 113 (394)
T ss_pred HhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----ChHHHHHH
Confidence 335677778888887 788999899999999999999999999999999999999888877766542 33333333
Q ss_pred HHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHH
Q 008624 460 ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLF 534 (559)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 534 (559)
.-.+.+.+.+ ...+....++.|.+|+++|+.+.++.....++|..++|.+.+.+.+..||.+.+.+.+...++.
T Consensus 114 ~r~l~G~~~g-~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~ 187 (394)
T PRK10213 114 GRACLGLALG-GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLC 187 (394)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 3333333333 3445566788899999999999999999999999999999999999999998887766544433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-11 Score=119.01 Aligned_cols=179 Identities=12% Similarity=-0.008 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHH
Q 008624 360 AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 439 (559)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 439 (559)
...+..++.++........+....|.+.++.+.+. .+.++..+...++..++.+..|++.||+|||+.+..+.++..++
T Consensus 8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSA-TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 34444444555544444556666676678888887 88999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH---
Q 008624 440 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV--- 516 (559)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~--- 516 (559)
.++.... ++.+..+..-++.+.+. ....+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+
T Consensus 87 ~~~~~~~-----~~~~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 87 STATMFA-----TGPESLYLLRILVGIAE-AGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred HHHHHHh-----cCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8777653 23333333333333333 33445555778999999999999999999999999999999988874
Q ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHHhhccc
Q 008624 517 ---FIHFSIKMVSTWFMILLFDWLVQFCRSCW 545 (559)
Q Consensus 517 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (559)
..||.+.+.+.++..++..++..++.++.
T Consensus 161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~ 192 (412)
T TIGR02332 161 LMALKGWQWLFLLEGFPSVILGVMTWFWLDDS 192 (412)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 36898888876666555444444444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-11 Score=120.97 Aligned_cols=149 Identities=14% Similarity=0.069 Sum_probs=113.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh---h-cchhhHHHHHHHHhHHHHhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY---A-PGLGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~-~~~~~l~~~r~l~G~~~g~~ 213 (559)
+|.+......+.....+...++.+++|+++||+|||++++.+.++..++.+.+.. . ++.+.+++..++.|++.+..
T Consensus 281 ~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (438)
T PRK09952 281 LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV 360 (438)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 6777776666666667777888999999999999999998887766555443322 2 23444455667778888888
Q ss_pred hhhHhHHHhhcCCCCccchhhhHHH-HHHHHHHHHHHHHhhhhcCCC-cchHHHHHhhhHHHHHHHHHHhccCCc
Q 008624 214 MHGAPLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPPS 286 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~e~ 286 (559)
.+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+.+.+.. ++|+..+...++..++..+..+.++|+
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8889999999999999998888854 445689999999999987743 368888888888888777776666653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-11 Score=115.95 Aligned_cols=159 Identities=13% Similarity=-0.043 Sum_probs=119.5
Q ss_pred hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHH
Q 008624 379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 458 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (559)
.....|.+..+.+.+. .+.++......++.+++.++.|+++||+|||+.+..+.++..++.+++.........+.+..+
T Consensus 18 ~~~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
T TIGR00900 18 TQVALPLYVLAGTGSA-SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVY 96 (365)
T ss_pred HHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 4455567777777776 788999999999999999999999999999999998888777777666554321111333333
Q ss_pred HHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHH
Q 008624 459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (559)
...++.+.+ .....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||.+.+...++..++..++.
T Consensus 97 ~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 97 VLAGILAIA-QAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333 3334455668899999999999999999999999999999999999999999888877665555444433
Q ss_pred H
Q 008624 539 Q 539 (559)
Q Consensus 539 ~ 539 (559)
.
T Consensus 176 ~ 176 (365)
T TIGR00900 176 V 176 (365)
T ss_pred H
Confidence 3
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-11 Score=119.05 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=114.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-HHHHHHHHHHHHHHh-----hcchhhHHHHHHHHhHHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI-IAAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIG 211 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~-~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g 211 (559)
+|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.+.+ .++.+.+++..++.|++.+
T Consensus 252 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~ 331 (402)
T TIGR00897 252 LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLA 331 (402)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999988764 333334443333322 2466777788899999888
Q ss_pred hhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc
Q 008624 212 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 283 (559)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 283 (559)
...+. ...+.|.. +++|++++|+.+....+|..++|.+++.+.+.. ||+..|++.+++.++..++.+++
T Consensus 332 ~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~-g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 332 GYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF-GAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHh
Confidence 76554 45667765 568999999999999999999999999999987 89999999998887777766554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-11 Score=118.03 Aligned_cols=141 Identities=14% Similarity=0.190 Sum_probs=123.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHh
Q 008624 139 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 218 (559)
Q Consensus 139 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 218 (559)
+.+....|++.+...+...++.++.|++.||+|||+.+.++.++.+++.++...+++.+.+++.+++.|++.+.......
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667789999999999999999999999999999999999999999888878889999999999999999887777777
Q ss_pred HHHhhcCCCCccchhhhH-HHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH
Q 008624 219 LYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 280 (559)
Q Consensus 219 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 280 (559)
.++.+..+++.++...+. ++....+|..+++.++|++.+.. ||+..|.+.+++.++..+..
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHHHH
Confidence 788888888888887766 67889999999999999999987 99999999888877665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.2e-11 Score=120.26 Aligned_cols=166 Identities=16% Similarity=0.023 Sum_probs=122.4
Q ss_pred HHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHh
Q 008624 369 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 448 (559)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (559)
.+........+..+.|.+.++.|.+. .+.++......++..++.++.|+++||+|||+.+..+.++..++.+.....
T Consensus 19 ~~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-- 95 (471)
T PRK10504 19 FFMQSLDTTIVNTALPSMAQSLGESP-LHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-- 95 (471)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--
Confidence 33333344456778899999999887 778888888889989999999999999999999988877777766654431
Q ss_pred hcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHH
Q 008624 449 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTW 528 (559)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~ 528 (559)
.+.+..++..++.+.+. ....+....++.|.+|+++|+++.|+.+....+|..++|.+.|.+.+..||.+.+.+..
T Consensus 96 ---~~~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~ 171 (471)
T PRK10504 96 ---GTLNELLLARVLQGVGG-AMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI 171 (471)
T ss_pred ---CCHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence 23333333333333333 33345556778899999999999999999999999999999999999999988887765
Q ss_pred HHHHHHHHHHHHh
Q 008624 529 FMILLFDWLVQFC 541 (559)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (559)
....+..++....
T Consensus 172 ~~~~l~~~~~~~~ 184 (471)
T PRK10504 172 PVGIIGAIATLML 184 (471)
T ss_pred HHHHHHHHHHHHh
Confidence 5554444444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=126.68 Aligned_cols=137 Identities=13% Similarity=0.055 Sum_probs=110.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh--cchhhHHHHHHHHhHHHHhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--PGLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~ 215 (559)
+|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++.... .+.+.+.+..++.++......+
T Consensus 306 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (496)
T PRK03893 306 LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISG 385 (496)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccch
Confidence 78999999999999999999999999999999999999988877777666544433 3344444555555544444556
Q ss_pred hHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHH
Q 008624 216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 275 (559)
Q Consensus 216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~ 275 (559)
...+++.|.+|+++|++++++......+|..+||++++.+.+.. ||+..+.+.+....+
T Consensus 386 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~-g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 386 LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL-DLGTALASLSFSLTF 444 (496)
T ss_pred hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999999999999987 899887665544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=121.17 Aligned_cols=156 Identities=16% Similarity=0.010 Sum_probs=118.0
Q ss_pred cchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhH
Q 008624 376 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 455 (559)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (559)
......+.|.+.++.+.+. .+.+++.....++.+++.++.|++.||+|||+.+..+.++..++.+++... .+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 106 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDP-VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-----TNVT 106 (398)
T ss_pred HHHHHhhHHHHhhccCCCH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc-----cchH
Confidence 3445667788888888876 788999999999999999999999999999999998888877777666542 2233
Q ss_pred HHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHH
Q 008624 456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFD 535 (559)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 535 (559)
..++..++.+ .......+...++..|.+|++.|+++.++.+....+|..+++.+.+.+.+..||...+.+.+...++..
T Consensus 107 ~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 185 (398)
T TIGR00895 107 QLLILRFLAG-LGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185 (398)
T ss_pred HHHHHHHHHh-cccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHH
Confidence 3333333333 333334455668889999999999999999999999999999999999999998887776644444333
Q ss_pred HHH
Q 008624 536 WLV 538 (559)
Q Consensus 536 ~~~ 538 (559)
++.
T Consensus 186 ~~~ 188 (398)
T TIGR00895 186 LLL 188 (398)
T ss_pred HHH
Confidence 333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-11 Score=116.31 Aligned_cols=140 Identities=18% Similarity=0.068 Sum_probs=120.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+..
T Consensus 235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 314 (382)
T PRK11128 235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred hHHHhhcCCCCccchhhhHHH-HHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH
Q 008624 218 PLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 280 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 280 (559)
..++.+. +++++++..++.. ...++|..+||.++|.+.+.. ++ ..|+..+++.++.+++.
T Consensus 315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~-g~-~~~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 315 MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL-GA-GVFWVMALVALPALFIR 375 (382)
T ss_pred HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHH
Confidence 9998887 5666788888876 667788899999999999987 76 46666666666554433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=123.93 Aligned_cols=161 Identities=15% Similarity=0.060 Sum_probs=124.0
Q ss_pred cchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhH
Q 008624 376 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 455 (559)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (559)
........|.+.++.+.+. .+.++......++.+++.++.|++.||+|||+.+..+.++..++.+++... .+.+
T Consensus 18 ~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~ 91 (485)
T TIGR00711 18 STIVNVAIPTIAGDLGSSL-SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-----PNLE 91 (485)
T ss_pred HHHHHHHHHHHHHhcCCCh-hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-----CCHH
Confidence 3446667788888888876 788999999999999999999999999999999999988888887776542 2233
Q ss_pred HHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHH
Q 008624 456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFD 535 (559)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 535 (559)
..+.. .++.+.......+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..||.+.++......++..
T Consensus 92 ~l~~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~ 170 (485)
T TIGR00711 92 LMIIF-RVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVV 170 (485)
T ss_pred HHHHH-HHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHH
Confidence 33333 33333333344456668889999999999999999999999999999999999999999988877665555444
Q ss_pred HHHHHhhc
Q 008624 536 WLVQFCRS 543 (559)
Q Consensus 536 ~~~~~~~~ 543 (559)
++..+..+
T Consensus 171 ~~~~~~~~ 178 (485)
T TIGR00711 171 VVAFFILP 178 (485)
T ss_pred HHHHHHcC
Confidence 44444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.7e-11 Score=116.26 Aligned_cols=166 Identities=15% Similarity=-0.002 Sum_probs=121.3
Q ss_pred HhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcC
Q 008624 372 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG 451 (559)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (559)
...+........|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+.++..++..++...
T Consensus 15 ~~~~~~~~~~~lp~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~----- 88 (392)
T PRK10473 15 YPAGIDMYLVGLPRIAADLNASE-AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA----- 88 (392)
T ss_pred HHHHHHHHhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----
Confidence 33333445567788888888887 788899999999999999999999999999999998888887777766542
Q ss_pred chhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHH
Q 008624 452 GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMI 531 (559)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~ 531 (559)
.+.+..+...++.+.+. ....+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||.+.+.+.+++.
T Consensus 89 ~~~~~~~~~~~l~g~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~ 167 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGA-GCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMG 167 (392)
T ss_pred CcHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence 22233333333333222 22333455788899999999999999999999999999999988888889888777766655
Q ss_pred HHHHHHHHHhhcc
Q 008624 532 LLFDWLVQFCRSC 544 (559)
Q Consensus 532 ~~~~~~~~~~~~~ 544 (559)
++..++.....++
T Consensus 168 ~i~~~~~~~~~~~ 180 (392)
T PRK10473 168 ILVLLLSLFILKE 180 (392)
T ss_pred HHHHHHHHHHcCC
Confidence 5554444444443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=115.67 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=113.4
Q ss_pred cchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHHHHHHHHHHHHHHhhcCch
Q 008624 376 QPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKILGGF 453 (559)
Q Consensus 376 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (559)
++.+..++|.++.+ .|++. .+++.+.........++.+++|+++||+ |||+.+.++.++..++.+++.... ..
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~-~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~----~~ 99 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDD-NHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE----IH 99 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh----cc
Confidence 34466677888755 67776 7788888888888899999999999999 999999999988888876554311 11
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeecccCCcc--hhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHH
Q 008624 454 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMI 531 (559)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~ 531 (559)
.........+...+.+ ...+...+++.|.+|++ .|.++.++.+...++|++++|.+.+.+.+..||...+...++..
T Consensus 100 ~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm 178 (493)
T PRK15462 100 PSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM 178 (493)
T ss_pred hhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 1212222222222222 23344457889999875 69999999999999999999999999999999998887765544
Q ss_pred HHHHH
Q 008624 532 LLFDW 536 (559)
Q Consensus 532 ~~~~~ 536 (559)
++..+
T Consensus 179 ~l~li 183 (493)
T PRK15462 179 IAGLV 183 (493)
T ss_pred HHHHH
Confidence 44333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=118.99 Aligned_cols=176 Identities=13% Similarity=-0.004 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHH
Q 008624 362 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 441 (559)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 441 (559)
+....+..+....-...+..-.|.+.++++.+. .+.++....+.++..++.+..|+++||+|||+.+..+.++..++.+
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~-~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASG-NELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 333444444444444456667788888888776 6789999999999999999999999999999999999999888888
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeeccc-CCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhh
Q 008624 442 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI-FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHF 520 (559)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~ 520 (559)
+++.. ++.+..++.-.+.+.+.+ ...+.....+.+. .|+++|+++.|+......+|..++|.+.+.+.+..||
T Consensus 87 ~~~~a-----~~~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw 160 (495)
T PRK14995 87 AAAFS-----PTASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW 160 (495)
T ss_pred HHHHc-----CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence 77753 334444433333333333 2333333444444 4778999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Q 008624 521 SIKMVSTWFMILLFDWLVQFCRSC 544 (559)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~ 544 (559)
.+.+++...+.++..++.....++
T Consensus 161 r~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 161 GSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 998887665555554444444443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=120.84 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=135.8
Q ss_pred ccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 008624 122 GATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLV 201 (559)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 201 (559)
..+|.+.++. +|.++...|++.+++.+|..++.++.+++.+|+++++.+..+.++++++.+..+++++.+..++
T Consensus 239 aLlPl~a~~~------l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~ 312 (524)
T PF05977_consen 239 ALLPLFARDV------LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALI 312 (524)
T ss_pred HhhhHHHHHH------hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3455554443 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH
Q 008624 202 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 280 (559)
Q Consensus 202 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 280 (559)
.-++.|++.........+.+.+..|++.|||+++++.+....+..+|.++.|.+.+.. |-+..+.+.++..++..++.
T Consensus 313 ~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 313 ALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 88988887776655554444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=116.95 Aligned_cols=154 Identities=13% Similarity=0.045 Sum_probs=116.6
Q ss_pred CcchhhhchHHHHHH---cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHHHHHHHHHHHHHHhhc
Q 008624 375 GQPSVLYYAGPILQS---AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL 450 (559)
Q Consensus 375 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (559)
+++....+++.|+++ .|.+. .+++.......++..++.+++|+++|| +|||+.+.++.++.+++.+++...
T Consensus 25 ~~~~~~~~L~~yl~~~~~lg~s~-~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~---- 99 (475)
T TIGR00924 25 SYYGMQGILAVYLVQQAGLGFSQ-EQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS---- 99 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc----
Confidence 344567778888765 57776 789999999999999999999999999 899999999999988888777652
Q ss_pred CchhHHHHHHHHHHHHHhhcccccccceeecccCCcch---hhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHH
Q 008624 451 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT---RGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVST 527 (559)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~ 527 (559)
.+.+..+....+.+ .......+...++..+.+|+++ |+++.++.+...++|.+++|.+.+.+.+..||.+.+...
T Consensus 100 -~~~~~~~~~~~l~g-~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 100 -IYPDLIFYGLGTIA-VGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred -ccHhHHHHHHHHHH-hccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 22223333333333 2233344555577788887654 888999999999999999999999999999998888776
Q ss_pred HHHHHHHH
Q 008624 528 WFMILLFD 535 (559)
Q Consensus 528 ~~~~~~~~ 535 (559)
++..++..
T Consensus 178 ~~~~~~~~ 185 (475)
T TIGR00924 178 AVGMVIGL 185 (475)
T ss_pred HHHHHHHH
Confidence 65544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=111.69 Aligned_cols=178 Identities=9% Similarity=0.025 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHH
Q 008624 362 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 441 (559)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 441 (559)
.+..++.+..++..=-.+..-.|.+.++.+++. .+.|.+.+...+..-++.++.|.++||.+.|..+..++++.++..+
T Consensus 31 f~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk-~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ni 109 (448)
T COG2271 31 FLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSK-TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNI 109 (448)
T ss_pred HHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHH
Confidence 333333333333333346666788888888887 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhh--HHhHHhhh
Q 008624 442 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF--SPLKVFIH 519 (559)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~--g~~~~~~g 519 (559)
++++. ...+...++..+-+.+.+.+..|.. ..+..-+|+++||+..++-++..++|+.+.|.+. +.+.++.+
T Consensus 110 l~Gfs-----~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~ 183 (448)
T COG2271 110 LFGFS-----PSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG 183 (448)
T ss_pred HHhhh-----hHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccc
Confidence 99984 2233333344444445555555544 7778889999999999999999999999999999 89999889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccc
Q 008624 520 FSIKMVSTWFMILLFDWLVQFCRSCWE 546 (559)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (559)
|...+++.++++++..++.++..+.+.
T Consensus 184 w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 184 WRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999988888877777766655443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-11 Score=122.50 Aligned_cols=149 Identities=17% Similarity=0.047 Sum_probs=117.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-----hc------chhhHHHHHHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----AP------GLGVLLVGRLLY 206 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~------~~~~l~~~r~l~ 206 (559)
+|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++ .+ +...+....++.
T Consensus 314 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (481)
T TIGR00879 314 AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFI 393 (481)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHH
Confidence 6778888899999999999999999999999999999999998888888777662 11 222333333333
Q ss_pred hHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHh-ccCC
Q 008624 207 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPP 285 (559)
Q Consensus 207 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 285 (559)
+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.+.. +|++.|++.++++++..++.+ +.||
T Consensus 394 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 394 AFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred HHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccceehhHHHHHHHHHHHHheeccc
Confidence 33333345667778899999999999999999999999999999999988877 899999999888887777664 4565
Q ss_pred ch
Q 008624 286 SP 287 (559)
Q Consensus 286 ~p 287 (559)
++
T Consensus 473 ~~ 474 (481)
T TIGR00879 473 TK 474 (481)
T ss_pred CC
Confidence 43
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=115.68 Aligned_cols=148 Identities=21% Similarity=0.222 Sum_probs=119.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
.|.+..+.|++.+.+.++..++.++.|++.||+|||+.+..+..+.+++.++....+ +...+ .-++.|++.+...+.
T Consensus 235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~ 312 (393)
T PRK09705 235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPL 312 (393)
T ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHH
Confidence 688999999999999999999999999999999999999988888877776554333 22222 235678888888887
Q ss_pred HhHHHhhcCC-CCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH-hccCCch
Q 008624 217 APLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSP 287 (559)
Q Consensus 217 ~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p 287 (559)
......+..+ +++|++..++.+....++..++|.+.+++.+..++|...|++.++.+++..+.. .+.||++
T Consensus 313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7777777775 578999999999999999999999999999987668888988887777766654 4556643
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=118.73 Aligned_cols=149 Identities=19% Similarity=0.162 Sum_probs=112.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--chh--hHHHHHHHHhHHHHh-
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLG--VLLVGRLLYGLGIGL- 212 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~--~l~~~r~l~G~~~g~- 212 (559)
+|.+....++......++..++.++.|+++||+|||++++.+.++.+++.++.+... +.. ....+-++.+++.+.
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (479)
T PRK10077 301 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 380 (479)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 677777777777778888999999999999999999999999999998887765431 221 222334444444443
Q ss_pred hhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhh------cCCCcchHHHHHhhhHHHHHHHHHHh-ccCC
Q 008624 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ------INAVGGWRYMYGLSAPLALLMGIGMW-SLPP 285 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l------~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e 285 (559)
..+....++.|.+|+++|++++++......+|.++++.+.+.+ .+.. +|++.|++.++++++.+++.+ +.||
T Consensus 381 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e 459 (479)
T PRK10077 381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF-HNGFSYWIYGCMGVLAALFMWKFVPE 459 (479)
T ss_pred ccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc-cCccHHHHHHHHHHHHHHHHHhcccc
Confidence 2367789999999999999999999999999998886665543 3455 888999998887777766654 4566
Q ss_pred ch
Q 008624 286 SP 287 (559)
Q Consensus 286 ~p 287 (559)
+.
T Consensus 460 ~~ 461 (479)
T PRK10077 460 TK 461 (479)
T ss_pred CC
Confidence 43
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-09 Score=111.16 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=118.6
Q ss_pred ccCChhHHHHHHH-HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---Hhh-cchhhHHHHHHHHhHHHHh
Q 008624 138 FNLSAVQLGLVVS-GSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYA-PGLGVLLVGRLLYGLGIGL 212 (559)
Q Consensus 138 ~~~s~~~~g~~~s-~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~r~l~G~~~g~ 212 (559)
+|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-+++.++.|.
T Consensus 253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~ 332 (491)
T PRK11010 253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGM 332 (491)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 7899999999984 6668999999999999999999988877666655544332 333 3555555566776666666
Q ss_pred hhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCC
Q 008624 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 285 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 285 (559)
..+...++..+..+++.+++..++.+...++|..+++.++|.+.+.. ||+..|.+.++++++..+..+++++
T Consensus 333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777888999999999999999999999999999988999999987 9999999999988887776665543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-10 Score=113.00 Aligned_cols=157 Identities=13% Similarity=0.065 Sum_probs=115.3
Q ss_pred hchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 008624 381 YYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSA 460 (559)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (559)
.-+|.+.++++.+. ...++....+.++..++.++.|+++||+|||+++..+.++..++.++.... ++.+..++.
T Consensus 37 p~l~~i~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~~l~~~ 110 (413)
T PRK15403 37 PGIINVVRDFNADV-SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----TSMTQFLIA 110 (413)
T ss_pred cCHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHH
Confidence 33455666778776 778888889999999999999999999999999998888777777666542 233333333
Q ss_pred HHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 008624 461 LLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQF 540 (559)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 540 (559)
-++.+.+.+ ...+....+..|.+|++++++++++.+....++..++|.+.+.+.+..||.+.+...++..++..++..+
T Consensus 111 r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 111 RFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 2233445677889999999999999999999999999999999998889999888777665555444333
Q ss_pred hhcc
Q 008624 541 CRSC 544 (559)
Q Consensus 541 ~~~~ 544 (559)
..++
T Consensus 190 ~lp~ 193 (413)
T PRK15403 190 AMPE 193 (413)
T ss_pred hCCC
Confidence 3343
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=114.16 Aligned_cols=179 Identities=12% Similarity=0.012 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHH
Q 008624 359 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 438 (559)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 438 (559)
+...+...+..+........+....+.+.++.+.+. ...++......++..++.++.|+++||+|||+.+..+..+..+
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGA-EWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 333433444444333333444455677778888876 7888888999999999999999999999999999888887777
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhh
Q 008624 439 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFI 518 (559)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~ 518 (559)
+.+.+... .+.+..+...++.+.+. ....+.......|.+|++.|+++.++......++..++|.+.+.+.+..
T Consensus 91 ~~~~~~~~-----~~~~~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 164 (406)
T PRK15402 91 TCLAILLA-----QSIEQFTLLRFLQGIGL-CFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL 164 (406)
T ss_pred HHHHHHHH-----ccHHHHHHHHHHHHhHh-hhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 77665542 22333333323322222 2223445567788899999999999988888889999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcc
Q 008624 519 HFSIKMVSTWFMILLFDWLVQFCRSC 544 (559)
Q Consensus 519 g~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (559)
||.+.+.+.+++.++..+......++
T Consensus 165 ~w~~~~~~~~~~~~~~~~~~~~~~~~ 190 (406)
T PRK15402 165 PWRGMFVLFAALAALSFFGLWRAMPE 190 (406)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99888877666655544444333333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-11 Score=116.30 Aligned_cols=152 Identities=18% Similarity=0.129 Sum_probs=117.5
Q ss_pred hhhchH-HHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHH
Q 008624 379 VLYYAG-PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 457 (559)
Q Consensus 379 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (559)
.....| .+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+.++.+++.++..+ . .+.+..
T Consensus 15 ~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~----~~~~~~ 88 (352)
T PF07690_consen 15 ISPALPLYLAEELGLSP-SQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF-A----SNFWLL 88 (352)
T ss_dssp HHHHHH-HHHCCSTTTS-HCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-H----CCHHHH
T ss_pred HHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh-h----hhHHHH
Confidence 444555 5556678777 78999999999999999999999999999999999998888888444442 1 233333
Q ss_pred HHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 008624 458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWL 537 (559)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 537 (559)
+...++.+ .......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||.+.+.+.++..++..++
T Consensus 89 ~~~~~l~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 89 LIARFLLG-IGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred hhhccccc-cccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 33333333 33334455666889999999999999999999999999999999999998999988888777777666554
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=112.85 Aligned_cols=159 Identities=10% Similarity=-0.010 Sum_probs=114.9
Q ss_pred hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHH
Q 008624 379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 458 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (559)
.....|.+.++.+.++ .+.++......++..++.++.|+++||+|||+.+..+..+..++.+..... ++.+..+
T Consensus 27 ~~p~~~~i~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~ 100 (394)
T PRK11652 27 YVPAIADMARDLNVRE-GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----HSLTVLI 100 (394)
T ss_pred HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHH
Confidence 3345677788888887 788999999999999999999999999999999988887777776665442 2223333
Q ss_pred HHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHH
Q 008624 459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (559)
...++.+.+.+ ...+....+..|.++.++++.+.++.+....++..++|.+.+.+.+..||.+.+.+.++..++..++.
T Consensus 101 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 101 AASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 33233322222 22334445667888888999999999999999999999999999998899888877665554444433
Q ss_pred HHhhcc
Q 008624 539 QFCRSC 544 (559)
Q Consensus 539 ~~~~~~ 544 (559)
....++
T Consensus 180 ~~~~~~ 185 (394)
T PRK11652 180 ARWMPE 185 (394)
T ss_pred HHhCCc
Confidence 333333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=112.58 Aligned_cols=154 Identities=10% Similarity=-0.066 Sum_probs=118.1
Q ss_pred hhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHH
Q 008624 378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 457 (559)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (559)
......|.+.++.|.+. .+.++......++..++.++.|++.||+|||+.+..+..+.+++.+++... ++.+..
T Consensus 21 ~~~~~l~~~~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-----~~~~~l 94 (382)
T PRK10091 21 GIMGVLTELAHDVGISI-PAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-----SSYLML 94 (382)
T ss_pred HHHhChHHHHHHcCCCH-HHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-----CcHHHH
Confidence 35557788888888887 788999999999999999999999999999999999988888888776653 334444
Q ss_pred HHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 008624 458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWL 537 (559)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 537 (559)
++.-++.+.+.+. ..+.....+.|.+|+++|+.++++......++..+++.+.+.+.+..||.+.+...+...++..+.
T Consensus 95 ~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 95 AIGRLVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 4443433333332 233444667888898899999999999999999999999999999899998888766655444433
Q ss_pred H
Q 008624 538 V 538 (559)
Q Consensus 538 ~ 538 (559)
.
T Consensus 174 ~ 174 (382)
T PRK10091 174 I 174 (382)
T ss_pred H
Confidence 3
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-10 Score=111.94 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=114.6
Q ss_pred hhhchHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHH
Q 008624 379 VLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 457 (559)
Q Consensus 379 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (559)
...+.+.++ ++.+.+. ...++......+...+.+++.|+++||++||+.+..+.++.+++++.+... ++.+..
T Consensus 29 ~~~~~~~~~~~~~g~s~-~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-----~~~~~l 102 (400)
T PRK11646 29 VFPLISIRFVDQLGWAA-VMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-----HEPWLL 102 (400)
T ss_pred HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----ccHHHH
Confidence 455556555 5678876 889999999999999999999999999999999999999888888777652 233333
Q ss_pred HHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 008624 458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWL 537 (559)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 537 (559)
+...++.+.+ .....+...+++.+.+|+++|+++.|+.+...++|..++|.+.+.+. ..||.+.+++.++..++..++
T Consensus 103 ~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 103 WLSCILSGLG-GTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333 23334455577888899999999999999999999999999999998 678888777666555544433
Q ss_pred H
Q 008624 538 V 538 (559)
Q Consensus 538 ~ 538 (559)
.
T Consensus 181 ~ 181 (400)
T PRK11646 181 N 181 (400)
T ss_pred H
Confidence 3
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=115.76 Aligned_cols=144 Identities=16% Similarity=0.135 Sum_probs=103.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHH-HHHHHHHHHHHHHHHh--hcchhhHHHHHHHHhHHHHh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL--GRKREL-IIAAVLYALGALTTAY--APGLGVLLVGRLLYGLGIGL 212 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~--Grr~~~-~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~ 212 (559)
.|.+..+.+++...+.++..++.++.|+++||+ |||+.. +....+..++.++..+ ..+.+.++++.++.|.+...
T Consensus 284 ~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 363 (452)
T PRK11273 284 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYG 363 (452)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHh
Confidence 678888999999999999999999999999999 555432 2223333333333222 23444455555555654433
Q ss_pred hhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHH-HHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL-LGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
.......++.|.+|+++||+++|+.+....+|.. ++|.+++.+.+.. ||+..|++.++.+++.++....
T Consensus 364 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~-g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 364 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence 3333445678999999999999999888888765 5799999999887 8999999888887777665543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-10 Score=113.05 Aligned_cols=157 Identities=10% Similarity=-0.012 Sum_probs=110.3
Q ss_pred hhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHH
Q 008624 378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 457 (559)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (559)
....+.|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.... .+.+..
T Consensus 54 ~~~~~~~~l~~~~gls~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~s~~~l 127 (476)
T PLN00028 54 AAAPLLPIIRDNLNLTK-SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----SSATGF 127 (476)
T ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----cCHHHH
Confidence 45556677888899876 778888888888999999999999999999999888887777776665542 223333
Q ss_pred HHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH---------hhhhhHHHHHHH
Q 008624 458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV---------FIHFSIKMVSTW 528 (559)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~---------~~g~~~~~~~~~ 528 (559)
++..++.+.+.+ ...+. ..++.|.+|+++|+++.|+.+...++|+.+++.+.+.+.. ..||.+.+.+.+
T Consensus 128 ~~~r~l~G~~~~-~~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g 205 (476)
T PLN00028 128 IAVRFFIGFSLA-TFVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPG 205 (476)
T ss_pred HHHHHHHHHHHH-hhHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 232233332222 23332 3467899999999999999998888888888777655533 147888888777
Q ss_pred HHHHHHHHHHHHhh
Q 008624 529 FMILLFDWLVQFCR 542 (559)
Q Consensus 529 ~~~~~~~~~~~~~~ 542 (559)
++.++..++..++.
T Consensus 206 ~l~l~~~l~~~~~~ 219 (476)
T PLN00028 206 LLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHc
Confidence 66665555444443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.4e-10 Score=106.40 Aligned_cols=185 Identities=12% Similarity=0.007 Sum_probs=134.3
Q ss_pred hhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh
Q 008624 351 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI 430 (559)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 430 (559)
+++.++....+++...+..+.. ..+.+++-..+++.+..+ ...|......-.+.++.-++.+++.+|+|+-+++.
T Consensus 366 ~~~~s~~~llff~~av~mG~g~----~lv~tFLfWHled~~~~~-~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~ 440 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGV----GLVFTFLFWHLEDLGGIK-TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY 440 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHH----HHHHHHHHHHHhhcCCcc-eeeeehhhhhccchHHHHHHHHHHHHHhcccceee
Confidence 4566655444333333332222 234444444678877655 66778888888889999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHH-HHHHHHHHHH
Q 008624 431 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTF 509 (559)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~ 509 (559)
.++.+..+=++.+... .++|..+.+-++-+...+..+..+. +|+....|++.++++.++.... ..+|-.+|.+
T Consensus 441 lgLa~~~~Rf~~~S~L-----~n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl 514 (618)
T KOG3762|consen 441 LGLACNVGRFLYYSYL-----QNPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL 514 (618)
T ss_pred ehhhHHHHHHHHHHHh-----cCchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhh
Confidence 9888888777766654 5677777666666666666665444 8899999999999999999865 6788889999
Q ss_pred hhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 008624 510 AFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWE 546 (559)
Q Consensus 510 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (559)
++|.+.+.+|....+...++.+++.+++...+.+..+
T Consensus 515 IGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l~ 551 (618)
T KOG3762|consen 515 IGGFVVERFGARTTFRIFGIACLVTLALFISIQLLLK 551 (618)
T ss_pred hhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999888888877777766655554444333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-10 Score=113.03 Aligned_cols=148 Identities=20% Similarity=0.193 Sum_probs=135.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHHHHHHHHHHHHHHHh--------hcchhhHHHHHHHHh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK--RELIIAAVLYALGALTTAY--------APGLGVLLVGRLLYG 207 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr--~~~~~~~~~~~i~~~~~~~--------~~~~~~l~~~r~l~G 207 (559)
+|++..+...+.-+..+...+|++++|++.||+|.| ++++.+++++.+..+...+ .++-+.+.+.-++.|
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G 391 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG 391 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999 8999888888666666555 678889999999999
Q ss_pred HHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCC
Q 008624 208 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 285 (559)
Q Consensus 208 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 285 (559)
+..|..++...++.+|+.|+++.+..+|++....-....+||++.+.+.+..++-|+.++...++.++.+++.++++.
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999988767899999998888888888877765
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.5e-10 Score=110.97 Aligned_cols=119 Identities=22% Similarity=0.284 Sum_probs=103.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-cchhhHHHHHHHHhHHHHhhhhhHhH
Q 008624 141 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-PGLGVLLVGRLLYGLGIGLAMHGAPL 219 (559)
Q Consensus 141 s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 219 (559)
+..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999999888888777665 46677788889999999999999999
Q ss_pred HHhhcCC-------CCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC
Q 008624 220 YIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQINAV 259 (559)
Q Consensus 220 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 259 (559)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998865 456799999999999999999999999887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=113.22 Aligned_cols=159 Identities=16% Similarity=0.063 Sum_probs=120.3
Q ss_pred hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHH
Q 008624 379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 458 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (559)
.....|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++.+++..++... .+.+..+
T Consensus 10 ~~p~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~ 83 (377)
T PRK11102 10 YLPALPVIAADFGVSA-GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----QTIDQLI 83 (377)
T ss_pred HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----ccHHHHH
Confidence 3455677788888877 789999999999999999999999999999999999888888887777653 2233333
Q ss_pred HHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHH
Q 008624 459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (559)
...++.+.+. ....+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||.+.+...+...++..++.
T Consensus 84 ~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 84 YMRFLHGLAA-AAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 3333333333 333344557888999999999999999999999999999999999999999888777666555544444
Q ss_pred HHhhcc
Q 008624 539 QFCRSC 544 (559)
Q Consensus 539 ~~~~~~ 544 (559)
....++
T Consensus 163 ~~~~~~ 168 (377)
T PRK11102 163 FFFIPE 168 (377)
T ss_pred HHhCCc
Confidence 444333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.5e-11 Score=116.15 Aligned_cols=158 Identities=12% Similarity=0.077 Sum_probs=118.7
Q ss_pred hhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHH
Q 008624 378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 457 (559)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (559)
.+....|.+.++.+.+. .+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.+++... .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 86 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSK-TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----TSLWVM 86 (379)
T ss_pred hhhhhhHHHHHHhCCCH-hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----hhHHHH
Confidence 35556677778888887 789999999999999999999999999999999999988888888777653 223333
Q ss_pred HHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHH-HhhHHhHHhhhhhHHHHHHHHHHHHHHH
Q 008624 458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT-FAFSPLKVFIHFSIKMVSTWFMILLFDW 536 (559)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 536 (559)
++..++. +.......+...+++.|.+|+++|+++.++.+....+|..+++ .+.+.+.+..+|.+.+...+++.++..+
T Consensus 87 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (379)
T TIGR00881 87 AALWALN-GIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL 165 (379)
T ss_pred HHHHHHH-HhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 3333333 3333344456668889999999999999999999999999999 4666666777888877766655554444
Q ss_pred HHHHhh
Q 008624 537 LVQFCR 542 (559)
Q Consensus 537 ~~~~~~ 542 (559)
+.....
T Consensus 166 ~~~~~~ 171 (379)
T TIGR00881 166 ICFLLL 171 (379)
T ss_pred HHheee
Confidence 444333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-09 Score=110.89 Aligned_cols=151 Identities=12% Similarity=0.034 Sum_probs=103.9
Q ss_pred chhhhchHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHHHHHHHHHHHHHHhhcCchh
Q 008624 377 PSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGFP 454 (559)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (559)
+.+..+.+.++ +++|.+. .+++..............+++|+++|| +|||+.+..+.++.+++..++.... +..
T Consensus 38 y~~~~~l~~yl~~~lg~s~-~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~----~~~ 112 (500)
T PRK09584 38 YGLQGIMAVYLVKQLGMSE-ADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG----HDA 112 (500)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc----ccH
Confidence 44666777777 5678776 555666655555555556789999999 5999999999888888877665421 122
Q ss_pred HHHHHHHHHHHHHhhcccccccceeecccCCcch--hhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHH
Q 008624 455 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMIL 532 (559)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~ 532 (559)
+...+...+.+.+.+ ...+...++..|.+|++. +..+.++.++..++|.+++|.+.|.+.+..||.+.+...++..+
T Consensus 113 ~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~ 191 (500)
T PRK09584 113 GIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGML 191 (500)
T ss_pred HHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 222222233333332 334455577888887543 45678888999999999999999999999999988877654444
Q ss_pred H
Q 008624 533 L 533 (559)
Q Consensus 533 ~ 533 (559)
+
T Consensus 192 i 192 (500)
T PRK09584 192 I 192 (500)
T ss_pred H
Confidence 3
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.19 E-value=7e-10 Score=109.95 Aligned_cols=142 Identities=18% Similarity=0.056 Sum_probs=111.9
Q ss_pred ccCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh------hcchhhHHHHHHHHhHHH
Q 008624 138 FNLSAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY------APGLGVLLVGRLLYGLGI 210 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l-~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~------~~~~~~l~~~r~l~G~~~ 210 (559)
.|.+.+++|++.....+ ...++.++.|++.||+|+|+.+..+..+.++..+.... .++.+.+....++.+++.
T Consensus 238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (390)
T TIGR02718 238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT 317 (390)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence 78999999999888764 66677899999999999999998877766443332221 123344455556677777
Q ss_pred HhhhhhHhHHHhhcCCC-CccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH
Q 008624 211 GLAMHGAPLYIAETCPS-QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 280 (559)
Q Consensus 211 g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~ 280 (559)
+...+...+.+.+..++ +++++.+++.+...++|..+||.++|.+.+.. ||+..|++.+++.++..+..
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAGGFLSGTVLAVLAILLA 387 (390)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHh
Confidence 88888888888788776 88999999999999999999999999999877 89999998887777655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-10 Score=109.52 Aligned_cols=158 Identities=11% Similarity=-0.101 Sum_probs=111.6
Q ss_pred hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHH
Q 008624 379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 458 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (559)
+....|.+.++.+.+. .+.++......++..++.+..|++.||+|||+++.........+.. .... ..+....+
T Consensus 10 ~~~~lp~i~~~~~~s~-~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~----~~~~~~l~ 83 (368)
T TIGR00903 10 FSPVLSLVAEDIDVSK-EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD----PFNYEWLL 83 (368)
T ss_pred HHhhHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH----hccHHHHH
Confidence 5556778888899887 7889999999999999999999999999988876544433333221 1111 02223333
Q ss_pred HHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHH
Q 008624 459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLV 538 (559)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 538 (559)
+.-++.+.+.+ ... .......|.+|+++|+++.++.+....+|..+++.+.+.+.+..||...+...++..++..++.
T Consensus 84 ~~R~l~G~g~~-~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 84 ACQLLAALGQP-FLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHHHhHhH-HHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 33333333332 222 2334457889999999999999999999999999999999999999998888666665555555
Q ss_pred HHhhcc
Q 008624 539 QFCRSC 544 (559)
Q Consensus 539 ~~~~~~ 544 (559)
....++
T Consensus 162 ~~~lp~ 167 (368)
T TIGR00903 162 LAALPA 167 (368)
T ss_pred HHHcCC
Confidence 544444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.3e-10 Score=108.87 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=111.4
Q ss_pred CchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHH
Q 008624 356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 435 (559)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 435 (559)
++++.+.+..++..+.... .....+.+..+.+.+. ...++....+.+...+..++.|++.||++||+++..+.++
T Consensus 3 ~~f~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~-~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~ 77 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNA----LLFAAIALLKELHYPD-WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI 77 (393)
T ss_pred CcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence 3455555544444442222 3333344567777765 6789999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH
Q 008624 436 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515 (559)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 515 (559)
.+++.+.+.... +. +... ++.+.......|...+++.|.+|+++|++++|+.+....++..++|.+.|.+.
T Consensus 78 ~~~~~~~~~~~~-----~~---~~~r-~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 78 KLLGCLLMLFGI-----HP---LLAY-GLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HHHHHHHHHHHH-----HH---HHHH-HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766654421 11 2222 23334444556677789999999999999999999999999999999999998
Q ss_pred HhhhhhHHHH
Q 008624 516 VFIHFSIKMV 525 (559)
Q Consensus 516 ~~~g~~~~~~ 525 (559)
+.. +...+.
T Consensus 149 ~~~-~~~~~~ 157 (393)
T PRK11195 149 DPH-AEAALA 157 (393)
T ss_pred HHH-HHHHHH
Confidence 864 433333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=109.16 Aligned_cols=154 Identities=14% Similarity=0.015 Sum_probs=112.3
Q ss_pred chHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 008624 382 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL 461 (559)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (559)
..|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.++.... .+.+..++..
T Consensus 28 ~~~~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~ 101 (401)
T PRK11043 28 AFKAIQADLQTSA-SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----ESAAQLLVLR 101 (401)
T ss_pred hHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHH
Confidence 3455567788876 889999999999999999999999999999999988887777776665542 2233333333
Q ss_pred HHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 008624 462 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFC 541 (559)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (559)
++.+.+.+ ...+....+..|.+|+++++...+..+....++..++|.+.+.+.+..||...+....+..++..++...+
T Consensus 102 ~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 102 FVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 33222222 22223346678889988899999999888899999999999999999999888877666555554444433
Q ss_pred h
Q 008624 542 R 542 (559)
Q Consensus 542 ~ 542 (559)
.
T Consensus 181 ~ 181 (401)
T PRK11043 181 K 181 (401)
T ss_pred C
Confidence 3
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-10 Score=111.76 Aligned_cols=147 Identities=10% Similarity=0.035 Sum_probs=113.7
Q ss_pred cchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhH
Q 008624 376 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 455 (559)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (559)
.....+..|.+.++.+.++ .+.++......++..++.++.|++.||+|||+.+..+.++.+++.++.... .+.+
T Consensus 34 ~~~~~~~~~~i~~~~~~s~-~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~~~ 107 (426)
T PRK12307 34 FMLIFYIMYLIKADLGLTD-MEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-----SGVI 107 (426)
T ss_pred HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----hHHH
Confidence 3345555666677888887 788999999999999999999999999999999999998888888776653 2233
Q ss_pred HHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHH
Q 008624 456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWF 529 (559)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~ 529 (559)
..++.-++.+.+.+ ...+....++.|.+|+++|+++.++......+|.++++.+.+.+.+..||.+.+.+...
T Consensus 108 ~l~~~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 108 MLTLSRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 33333333333333 33345557788999999999999999999999999999999888888899888876443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.4e-10 Score=111.93 Aligned_cols=160 Identities=13% Similarity=0.028 Sum_probs=110.4
Q ss_pred hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHH
Q 008624 379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 458 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (559)
+....|.+. +.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++.+++.+.+...... ..+.+...
T Consensus 46 ~~~~~p~~~-~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 122 (438)
T TIGR00712 46 FALAMPYLV-EQGFSK-GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA-TSSIAIMF 122 (438)
T ss_pred HHhhhHHHH-HcCCCH-hHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc-cchHHHHH
Confidence 444556554 467776 789999999999999999999999999999999888887777777665442110 01122222
Q ss_pred HHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH-hhhhhHHHHHHHHHHHHHHHH
Q 008624 459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV-FIHFSIKMVSTWFMILLFDWL 537 (559)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~ 537 (559)
+..++.+.+.+... +.....+.|.+|+++|++++|+.++...+++.+++.+.+...+ ..||...+...++..++..++
T Consensus 123 ~~~~l~g~~~g~~~-~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 123 VLLFLNGWFQGMGW-PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHhhcch-HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 22233333333333 3334667789999999999999999999999999888776554 468888777766655554444
Q ss_pred HHHhh
Q 008624 538 VQFCR 542 (559)
Q Consensus 538 ~~~~~ 542 (559)
..++.
T Consensus 202 ~~~~~ 206 (438)
T TIGR00712 202 AFAMM 206 (438)
T ss_pred HHHhc
Confidence 43433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-10 Score=106.12 Aligned_cols=149 Identities=23% Similarity=0.214 Sum_probs=137.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+|++..++.++...-.+..+++++++|++.||+|.|+++..++++..+.++..-+...-..+.++-.+.|+..|+.+..+
T Consensus 283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~S 362 (438)
T COG2270 283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASS 362 (438)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHH
Confidence 89999999999999999999999999999999999999999999999999888887777778888899999999999999
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCc
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 286 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 286 (559)
.++..+.+|+++-++.+|++....-.+..+||.+.+.+.+..++-|.-+....++..+.+++.+.+|+.
T Consensus 363 RSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 363 RSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999999999999999999999999999998887788888888888888888877777764
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=110.00 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=109.9
Q ss_pred cchhhhchHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHHHHHHHHHHHHHHhhcCch
Q 008624 376 QPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGF 453 (559)
Q Consensus 376 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (559)
++....+++.|++ ++|.+. .++.+....+.....+..+++|+++|| +|||+++..+.++..++.+.+.+.. ..
T Consensus 30 ~y~~~~~l~~yl~~~lg~~~-~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~----~~ 104 (489)
T PRK10207 30 YYGVQGILAVFFVKQLGFSQ-EQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL----LK 104 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc----cc
Confidence 3345555666654 477776 667777777777777778899999999 9999999999999999888777532 11
Q ss_pred hHHHHHHHHHHHHHhhcccccccceeecccCCcc--hhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHH
Q 008624 454 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMI 531 (559)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~ 531 (559)
....++...+. +.......|...+++.|.+|++ +|+.++++.....++|.+++|.+.|.+.++.||.+.|.+..+..
T Consensus 105 ~~ll~~~~~l~-~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~ 183 (489)
T PRK10207 105 PDLIFIALGTI-AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGL 183 (489)
T ss_pred hhHHHHHHHHH-HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 22222223333 3333344455568899999877 45778999999999999999999999999999988887755444
Q ss_pred H
Q 008624 532 L 532 (559)
Q Consensus 532 ~ 532 (559)
+
T Consensus 184 ~ 184 (489)
T PRK10207 184 I 184 (489)
T ss_pred H
Confidence 3
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-08 Score=97.16 Aligned_cols=316 Identities=16% Similarity=0.122 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCC
Q 008624 149 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ 228 (559)
Q Consensus 149 ~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 228 (559)
.++-...+.+++++.+.+.|+.|.|+.++++...+....+..-+ .|-+-++++-.+.|+|.+..+...-.++.|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 66667788899999999999999999999999999888877766 45677889999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhhhhcCCC-------cchH-HH----------HHhhhHHHHH---HHHHHhccCCch
Q 008624 229 IRGTLISLKELFIVLGILLGYFVGSFQINAV-------GGWR-YM----------YGLSAPLALL---MGIGMWSLPPSP 287 (559)
Q Consensus 229 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-------~~wr-~~----------f~~~~~~~~~---~~~~~~~~~e~p 287 (559)
.+.+..++..+....+.++|..+-..+.... .+-+ +. ..+.+++..+ ..+...+.|..
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~- 213 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK- 213 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc-
Confidence 9999999998888888888876654433211 0111 11 1111111111 11111222221
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHH
Q 008624 288 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 367 (559)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (559)
... .+.++. + ....+.-+...+++++++...+....+.
T Consensus 214 ~~~---------------~~~~~~--------------------------~-~~~~~~l~~~~~l~~~~~ml~L~~~f~~ 251 (461)
T KOG3098|consen 214 DVV---------------NCKSSS--------------------------E-TSFSELLKLTFKLLKTPKMLLLFPFFFY 251 (461)
T ss_pred chh---------------hhhhhc--------------------------c-ccHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence 000 000000 0 0000111123345555544444333332
Q ss_pred HHHHHhhCcchhhhchHHHH--H-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh---cCCchhhhhhhHHHHHHHH
Q 008624 368 VLFQQITGQPSVLYYAGPIL--Q-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD---LGRRPLLIGGVCGIALSLL 441 (559)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~ 441 (559)
..+.... .....|..+ . ..+.......++.....+++.+++....+.+.+| +|+++++.++..+..+.++
T Consensus 252 tG~~~Sf----~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~ 327 (461)
T KOG3098|consen 252 TGLETSF----WISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFL 327 (461)
T ss_pred HHHHHHH----HHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHH
Confidence 2222111 111112111 1 3344443566777778888888888888888765 5778888888877777777
Q ss_pred HHHHHHhhcCc------------hhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHH
Q 008624 442 LLSAYYKILGG------------FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 509 (559)
Q Consensus 442 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 509 (559)
+.-.......+ ..........+..+..-.++....+.++...+| +.|..+.++.-.-..+++.++-+
T Consensus 328 li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 328 LIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred HHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhh
Confidence 66554332110 112233333344444455566666677888885 77888888888777777666555
Q ss_pred hhHH
Q 008624 510 AFSP 513 (559)
Q Consensus 510 ~~g~ 513 (559)
..+.
T Consensus 407 ~~~~ 410 (461)
T KOG3098|consen 407 FSPY 410 (461)
T ss_pred hhhh
Confidence 4433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=112.21 Aligned_cols=135 Identities=22% Similarity=0.169 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHhHHHHhhhhhHhHHHhhcCCC
Q 008624 150 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL--GVLLVGRLLYGLGIGLAMHGAPLYIAETCPS 227 (559)
Q Consensus 150 s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 227 (559)
....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+...+....+..|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 34456677888999999999999999999999999998888776654 4555666777788888888999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCch
Q 008624 228 QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 287 (559)
Q Consensus 228 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 287 (559)
+.|+.++|+.+....+|.+++|.+.+ +.+ . ++..++++.++..++..++.+++||+.
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY-LGE-K-WLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-H-HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999988 433 3 677788888888888877778888864
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-11 Score=112.38 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHH
Q 008624 360 AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 439 (559)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 439 (559)
..++...+....+..--+.+..-.+..-+.++.++ ...|++.....+..++++++.|++.||++|++++.+|..+-.++
T Consensus 33 ~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~-s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A 111 (493)
T KOG1330|consen 33 LTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISD-SELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA 111 (493)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCc-hhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence 33333444444444444445544455555567776 78999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh
Q 008624 440 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH 519 (559)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g 519 (559)
.+..++. ..++.+.+.=.+.+..-..+.|+..++++|.+|.++|++++++.+....+|..+|-.+.+.+....+
T Consensus 112 v~~~~fs------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 112 VFASGFS------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred HHHHHHH------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 8887764 3444444444455555556778888999999999999999999999999999888888888877777
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008624 520 -FSIKMVSTWFMILLFDWLVQFCRSCWEQR 548 (559)
Q Consensus 520 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (559)
|.+.+...+++.+++.++..++.++++++
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 88888888888888888888888777653
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=105.80 Aligned_cols=141 Identities=18% Similarity=0.091 Sum_probs=105.1
Q ss_pred chhhhchHH-HHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhH
Q 008624 377 PSVLYYAGP-ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 455 (559)
Q Consensus 377 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (559)
.....+.|. +.++.+.+. .+.++......++.+++.++.|+++||+|||+.+..+.++..++.+++.... .+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----~~~~ 92 (366)
T TIGR00886 18 FAFSPLAVQMIKDDLGLST-AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----QSYS 92 (366)
T ss_pred HHhHHhhhHHHHHHhCCCH-HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh----hhHH
Confidence 346667775 557788887 7899999999999999999999999999999999999888888887776532 0233
Q ss_pred HHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh----------hhhhHHH
Q 008624 456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF----------IHFSIKM 524 (559)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~----------~g~~~~~ 524 (559)
..++..++.+. ...... ....++.|.+|+++|+.+.++.....++|..+++.+.+.+... .+|.+.+
T Consensus 93 ~~~~~~~~~g~-~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~ 169 (366)
T TIGR00886 93 VLLLLRLFIGI-AGGSFA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169 (366)
T ss_pred HHHHHHHHHHH-hchhhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 33333333332 233333 3447788999999999999999988888888888887776653 2677666
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-09 Score=101.12 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=108.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
+|+++.+.++..+.+..+..++.++.+++.||+|+|+++.++..+.+++.++....++... ..+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998888888888776666555433 345668999999999999
Q ss_pred hHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHH
Q 008624 218 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 272 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~ 272 (559)
.+...+..+++ .+.+.++. ....+|.+++|.+.|.+.+.. |.+..|++..+.
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~-g~~~a~~v~~~~ 303 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL-GIQLAFALPVPC 303 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc-cchHHHHHHHHH
Confidence 99999988754 45666765 566789999999999998987 788888754443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-09 Score=108.21 Aligned_cols=147 Identities=14% Similarity=0.047 Sum_probs=98.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH--h--hcchhhHHHHHHHHhHHHHhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA--Y--APGLGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~--~--~~~~~~l~~~r~l~G~~~g~~ 213 (559)
+|.+..+.++..++..++..+++++.|+++||+|||+.++++.++.++..+... . .++....+..-.+.+++.+..
T Consensus 274 ~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
T PRK10406 274 AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFY 353 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 688888999999998888899999999999999999988776655443332221 1 223332222223333344444
Q ss_pred hhhHhHHHhhcCCCCccchhhhHHHHHHHH-HHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCC
Q 008624 214 MHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 285 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 285 (559)
.+....++.|++|++.|+.++|+.+...++ +....|.+.+.+ +..+.|...+++.++..++..+..+++++
T Consensus 354 ~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 354 TSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 556678899999999999999998765443 344477777755 44424666666666666666665555433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=112.42 Aligned_cols=138 Identities=15% Similarity=0.073 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcc----hhhHHHHHHHHhHHHHhhhhhHhHHHhhcC
Q 008624 150 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG----LGVLLVGRLLYGLGIGLAMHGAPLYIAETC 225 (559)
Q Consensus 150 s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 225 (559)
....++..++.+++++++||+|||++++++.++.+++.++.++..+ ...+...-+...++..+..+....+..|.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 3344566678899999999999999998888887777666554321 111111111122222234456677789999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC---------cchHHHHHhhhHHHHHHHHHHhccCCch
Q 008624 226 PSQIRGTLISLKELFIVLGILLGYFVGSFQINAV---------GGWRYMYGLSAPLALLMGIGMWSLPPSP 287 (559)
Q Consensus 226 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~---------~~wr~~f~~~~~~~~~~~~~~~~~~e~p 287 (559)
|.+.|+++.++.+....+|.++++.+.+.+.+.. .++...|++.++++++..+..+++||+.
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence 9999999999999999999999999999887742 1456678888877777666667788864
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=107.28 Aligned_cols=125 Identities=21% Similarity=0.160 Sum_probs=94.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH-HH---hhcchhhHHHHHHHHhHHHHhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT-TA---YAPGLGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~-~~---~~~~~~~l~~~r~l~G~~~g~~ 213 (559)
+|.+..+.++....+.++..++.+++|+++||+|||++++.+.++..+..+. .. ..+++..+.+..++.|++.+..
T Consensus 269 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 348 (434)
T PRK15075 269 LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSY 348 (434)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 6888889999999999999999999999999999999988765544332221 11 1234444555566677777777
Q ss_pred hhhHhHHHhhcCCCCccchhhhHHHH-HHHHHHHHHHHHhhhhcCCCcchH
Q 008624 214 MHGAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAVGGWR 263 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~~wr 263 (559)
.+....++.|.+|+++|+.++++... +..++..++|.+.+.+.+.. |++
T Consensus 349 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~-g~~ 398 (434)
T PRK15075 349 NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT-GDK 398 (434)
T ss_pred HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc-CCc
Confidence 77777889999999999999998544 44455778999999988876 553
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-10 Score=111.67 Aligned_cols=149 Identities=10% Similarity=-0.092 Sum_probs=112.0
Q ss_pred HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Q 008624 389 SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCY 468 (559)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (559)
+.+.+. .+.+.+...+.++.+++.++.|++.||+|+|+.+..+.++..++.++..... ......+.+.-++.+..
T Consensus 70 ~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSG-ALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----GGGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCH-HHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHh
Confidence 345555 7789999999999999999999999999999999888887777766654321 11222233333344444
Q ss_pred hcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhh-hhhHHHHHHHHHHHHHHHHHHHhh
Q 008624 469 QISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFI-HFSIKMVSTWFMILLFDWLVQFCR 542 (559)
Q Consensus 469 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 542 (559)
.....+....++.|.+|+++|+++.|+.+....+|.++++.+.+.+.+.. ||...+.+.++..++..++.+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence 44555666688999999999999999999999999999999999999884 999888877666555544444433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=108.43 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=136.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG--RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 215 (559)
.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.++++++++.++..-++.|++.|....
T Consensus 328 ~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~ 407 (509)
T KOG2504|consen 328 LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSS 407 (509)
T ss_pred cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999988 55677788999999999999999999999999999999999998
Q ss_pred hHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccC
Q 008624 216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 284 (559)
Q Consensus 216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 284 (559)
....++.|+.+.++-..+.|+.....+++.++||++++.+.+..++|...|+..++..++..+.++..+
T Consensus 408 l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 408 LTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 888899999999999999999999999999999999999999886799999999999988887777665
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.7e-09 Score=98.62 Aligned_cols=156 Identities=13% Similarity=0.027 Sum_probs=117.8
Q ss_pred hchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 008624 381 YYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSA 460 (559)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (559)
...+.+-++.++++ .+.+++.++..+.+.+.++..|.+.||+|.|++...+.++..+-++.+.+.... .....+..
T Consensus 35 ~l~~~i~~~~~LS~-~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~---~~~~~ll~ 110 (417)
T COG2223 35 PLGVFIKSDFGLSE-GQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTY---PSTWQLLV 110 (417)
T ss_pred HHHhhhccccCCCH-HHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccC---CchHHHHH
Confidence 33444447788888 899999999999999999999999999999999999999988888888775432 22222333
Q ss_pred HHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh---hhHHHHHHHHHHHHHHHH
Q 008624 461 LLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH---FSIKMVSTWFMILLFDWL 537 (559)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g---~~~~~~~~~~~~~~~~~~ 537 (559)
+.++.+..+..+ .....++++.+|++++|.++|+.. .+++|..+..++.+.+....| |+....+.....++..++
T Consensus 111 ~gll~G~~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~ 188 (417)
T COG2223 111 IGLLLGLAGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVL 188 (417)
T ss_pred HHHHHhccccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 345588999999999999999999 999999999999999999999 776666665555554444
Q ss_pred HHHhh
Q 008624 538 VQFCR 542 (559)
Q Consensus 538 ~~~~~ 542 (559)
.++..
T Consensus 189 ~~~~~ 193 (417)
T COG2223 189 AWLGM 193 (417)
T ss_pred HHHHh
Confidence 44443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.9e-09 Score=102.96 Aligned_cols=133 Identities=15% Similarity=-0.020 Sum_probs=101.1
Q ss_pred hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHH
Q 008624 379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 458 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (559)
.....|.+.++.+.+. .+.+++.+...++..++++..|++.||+|||+.+..+.++.+++.+++..... ..+.+..+
T Consensus 22 ~~~l~~~~~~~~~~s~-~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--~~~~~~~l 98 (410)
T TIGR00885 22 TNPMVPQFQQAFTLTA-FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--IMNYTLFL 98 (410)
T ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--hccHHHHH
Confidence 4456677778888887 78999999999999999999999999999999999999998888877543321 12233333
Q ss_pred HHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH
Q 008624 459 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515 (559)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 515 (559)
...++.+.+.+... +....++.+..|++++++..++.+....+|..++|.+.+.+.
T Consensus 99 ~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 99 VGLFILTAGLGFLE-TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHhhHHHHH-hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333 333466777788899999999999999999999999988774
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-09 Score=102.45 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=126.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHh
Q 008624 139 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 218 (559)
Q Consensus 139 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 218 (559)
+.+....|.+.+...+.-++.-.+..++.+|+|.|+.++++..++.+=-++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccchhhhH-HHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 219 LYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 219 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
.|+.+.+|+|-.++...+ .+.+.++|.++.+.++|.+.|+. |.+..|++.+.+.++..++.++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-GFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-CcHHHHHHHHHHHHHHHHHhee
Confidence 999999998887777777 47889999999999999999998 9999999988887776665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-10 Score=92.83 Aligned_cols=131 Identities=17% Similarity=0.113 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeeccc
Q 008624 404 VIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI 483 (559)
Q Consensus 404 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (559)
...++.+++.++.+++.||++||+.+..+.....++.+.+... .+.+......++.+.+.+ ...+....+..|.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~ 79 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----SNITVLIIARFLQGFGAA-FALVAGAALIADI 79 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence 4567788899999999999999999988877777776665542 233333333333333333 3334556788999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 008624 484 FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQF 540 (559)
Q Consensus 484 ~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 540 (559)
+|+++|+++.++.+....+|..+++.+.+.+.+..++.+.+.......++..+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998888877776666555544444443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=100.79 Aligned_cols=130 Identities=11% Similarity=-0.007 Sum_probs=91.9
Q ss_pred hHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 008624 383 AGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL 461 (559)
Q Consensus 383 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (559)
.+.+-+ +++++. .+.+++.++..++..+.++..|++.||+|.|+++.++.++..+..+.+.+..+...++.+..++..
T Consensus 57 ~~~~~~~~~~ls~-~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r 135 (462)
T PRK15034 57 TVNLNKIGFNFTT-DQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIA 135 (462)
T ss_pred HHHhhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 334334 578887 789999999999999999999999999999999999888888877766653211112233333333
Q ss_pred HHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH
Q 008624 462 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515 (559)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 515 (559)
++.+. .+..+ +.....+++.+|+++||++.|+....+++|..+++++.+.+.
T Consensus 136 ~l~Gi-gg~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 136 LLCGF-AGANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHH-HHHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333 33333 345577889999999999999998777788777666665543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=103.41 Aligned_cols=120 Identities=25% Similarity=0.278 Sum_probs=100.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--chhhHHHHHHHHhHHHHhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 215 (559)
+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..++.|+|.+...+
T Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~ 338 (448)
T PRK09848 259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMT 338 (448)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 666665555555555677888999999999999999999999999888887777644 677777788899999999999
Q ss_pred hHhHHHhhcCCCC-------ccchhhhHHHHHHHHHHHHHHHHhhhhcC
Q 008624 216 GAPLYIAETCPSQ-------IRGTLISLKELFIVLGILLGYFVGSFQIN 257 (559)
Q Consensus 216 ~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 257 (559)
...+++.|..+.+ ++|...++++....+|..+|+.+.+.+.+
T Consensus 339 ~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 339 VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988754 45899999999999999999999887654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.3e-09 Score=104.10 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=104.5
Q ss_pred ccCChhHHHHHHHHHH-HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---Hhh-cchhhHHHHHH----HHhH
Q 008624 138 FNLSAVQLGLVVSGSL-YGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYA-PGLGVLLVGRL----LYGL 208 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~-l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~r~----l~G~ 208 (559)
+|.++.+++++.+... ++..++.+++|++.||+|+|+.+..+.++..+..+.. ++. ++.+.+++.-+ +.|+
T Consensus 240 ~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 319 (402)
T PRK11902 240 AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGM 319 (402)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 7889999999987654 5689999999999999999998887777666654433 343 45566665554 4555
Q ss_pred HHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc
Q 008624 209 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 283 (559)
Q Consensus 209 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 283 (559)
+.+...+....++.+.+|.++ .++++...++|..+++.++|.+.+.. ||+..|.+.++++++..++.+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~-G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 320 GTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAY-GWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777777766544 45666666788877777899999887 99999999998888776665443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-09 Score=103.82 Aligned_cols=126 Identities=21% Similarity=0.215 Sum_probs=102.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
.|.+..+.+++.+.+.++..++.++.|++.||+ +||+.+..+.++.+++.++..+.++..... .-++.|++.+...+.
T Consensus 227 ~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~ 305 (355)
T TIGR00896 227 HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPL 305 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHH
Confidence 688899999999999999999999999999999 567777788888888877777665433322 457889999999988
Q ss_pred HhHHHhhcCC-CCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHH
Q 008624 217 APLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 264 (559)
Q Consensus 217 ~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 264 (559)
..+.+.+..+ +++++...++.+....+|..++|.+.|.+.+..++|.+
T Consensus 306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 8787766554 56678889998888899999999999999887755543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=121.39 Aligned_cols=139 Identities=20% Similarity=0.211 Sum_probs=120.8
Q ss_pred ccCChh-HHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAV-QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~-~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
+|.+.. +.+++.+...++..++.+++|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.+...+.
T Consensus 263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 342 (1146)
T PRK08633 263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVP 342 (1146)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 788888 9999999999999999999999999999999999998888888888888889999999999999999999999
Q ss_pred HhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHH
Q 008624 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 276 (559)
Q Consensus 217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 276 (559)
..+++.+..|+++||+++++.+....+|.++++.+++.+.....++...|++.+.+.++.
T Consensus 343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888776543225666676666554443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-06 Score=85.36 Aligned_cols=116 Identities=5% Similarity=-0.073 Sum_probs=92.5
Q ss_pred ChhHHHHHHHHHHHHHHHH-HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh----c---------------------
Q 008624 141 SAVQLGLVVSGSLYGALLG-SILVYSIADFLGRKRELIIAAVLYALGALTTAYA----P--------------------- 194 (559)
Q Consensus 141 s~~~~g~~~s~~~l~~~i~-~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~----~--------------------- 194 (559)
+...+.++-+...+..++. .++.+++++|++|++++-.....+....+++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4468899999888877766 8999999999999999888777777766666553 1
Q ss_pred ------chhhHHHHHHHHhHHHHhhhh-hHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhc
Q 008624 195 ------GLGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI 256 (559)
Q Consensus 195 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 256 (559)
+.|...+..+...+-...... .-..+++|.++.+|-.|..+++..+.++|.++++.+..++.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444555566666666665 77889999999999999999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.9e-07 Score=86.13 Aligned_cols=332 Identities=14% Similarity=0.036 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH------hh--c----chhhHHHHHH---HHhHHHHh-h
Q 008624 150 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA------YA--P----GLGVLLVGRL---LYGLGIGL-A 213 (559)
Q Consensus 150 s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~------~~--~----~~~~l~~~r~---l~G~~~g~-~ 213 (559)
-.-.+...+.++..|.+.||..|.+++..++++.-++..+.+ +. . +-+....+.+ +.|.-.-. .
T Consensus 45 l~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las 124 (432)
T PF06963_consen 45 LVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLAS 124 (432)
T ss_pred HHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 334456778888999999999999988777665443332222 11 1 1122222222 22211111 1
Q ss_pred hhhHhHHHhhcC------CCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc----
Q 008624 214 MHGAPLYIAETC------PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL---- 283 (559)
Q Consensus 214 ~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~---- 283 (559)
.....++=.||. +++.+.+.++...-.--+..+++|++.|.+.+.. +.+....+.++..++..++-+++
T Consensus 125 ~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~-s~~~~~~~i~~~N~~S~~vEy~~l~~V 203 (432)
T PF06963_consen 125 IANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA-SPVIAAIFIAGWNLASVFVEYFLLARV 203 (432)
T ss_pred hhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122224443 3445566677777777788999999999988876 88888777777777665543321
Q ss_pred -CCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHH
Q 008624 284 -PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI 362 (559)
Q Consensus 284 -~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (559)
...|. +..|+...+ +..++..+ +. .+.. ........... .-.+....|+..++++.+...+
T Consensus 204 Y~~~P~-L~~~~~~~~----~~~~~~~~-------~~-~~~~---~~~~~~~~~~~--~~~~~~~~w~~Y~~q~vflas~ 265 (432)
T PF06963_consen 204 YNSVPA-LAVKKRSSE----SESSSDEE-------SS-SESS---SDPSILKRLWN--PLRTIIRGWRTYFRQPVFLASF 265 (432)
T ss_pred HHhChH-hcCCCCCcc----cccccccc-------cc-cccc---chhhHHHHHHH--HHHHHhccHHHHHhCHHHHHHH
Confidence 11121 000000000 00000000 00 0000 00000000000 0112234567777777555443
Q ss_pred HHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHH
Q 008624 363 IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 442 (559)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 442 (559)
. +.+.++...+ +...+..|+...|+++ ...+..-....+.++.+.++..++.+|+|..+.-.++.....++..+
T Consensus 266 a-lalLY~TVLs----f~~lmt~yl~~~G~s~-~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~ 339 (432)
T PF06963_consen 266 A-LALLYFTVLS----FGGLMTAYLKSQGYSP-SVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL 339 (432)
T ss_pred H-HHHHHHHHhc----CcHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 3 3333443333 3445566777789887 78888999999999999999999999999888777776655555444
Q ss_pred HHHHHhhcCch-hHHHHHH----HHHH-HHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHH
Q 008624 443 LSAYYKILGGF-PLVAVSA----LLLY-VGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 508 (559)
Q Consensus 443 ~~~~~~~~~~~-~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 508 (559)
........+.. ....... .++- .|.. ++=-...-+..|..|+++||+..|+-+...++...+.-
T Consensus 340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW--~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLW--SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH--hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHH
Confidence 43322222221 1111111 1111 1111 12122335778999999999999999998888765443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-08 Score=99.35 Aligned_cols=147 Identities=20% Similarity=0.174 Sum_probs=113.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc----ch--h---hHHHHHHHH--
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GL--G---VLLVGRLLY-- 206 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~--~---~l~~~r~l~-- 206 (559)
-|++..+..+.+....+...+..+++..+.||+|||+.++.+..+..+..++..... .. | ..+++.++.
T Consensus 300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~ 379 (485)
T KOG0569|consen 300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII 379 (485)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999988887776531 11 1 112333333
Q ss_pred hHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHH-hccCC
Q 008624 207 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPP 285 (559)
Q Consensus 207 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e 285 (559)
.++.| ..|...-+.+|.+|++.|..++++.....-+..++-...-..+.+..++ +.|++..+++++..+.. ..+||
T Consensus 380 ~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 380 SFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred hhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCcc
Confidence 33333 4678888999999999999999999888888887777766666565533 67777777777766655 57999
Q ss_pred ch
Q 008624 286 SP 287 (559)
Q Consensus 286 ~p 287 (559)
+.
T Consensus 457 Tk 458 (485)
T KOG0569|consen 457 TK 458 (485)
T ss_pred cC
Confidence 85
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=102.05 Aligned_cols=118 Identities=23% Similarity=0.361 Sum_probs=91.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhchhHHHHH-HHHHHHHHHHHHHhhcchh---------------
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRELII-AAVLYALGALTTAYAPGLG--------------- 197 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d----r~Grr~~~~~-~~~~~~i~~~~~~~~~~~~--------------- 197 (559)
+|++....+.+--..-+...+.+|+.|..+| ||||||.++. +.++..++.++.+++.++.
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 6777777788888888888999999999999 5898877664 5666677777777765432
Q ss_pred --hHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccch-hhhHHHHHHHHHHHHHHHHhhhh
Q 008624 198 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT-LISLKELFIVLGILLGYFVGSFQ 255 (559)
Q Consensus 198 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~g~~~~~~l 255 (559)
.++++--+.=++.-.....+-+++.|...++++.+ +++.+....++|..+|..+++++
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 33444444455566778889999999997777666 99999999999999999998854
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-08 Score=99.56 Aligned_cols=148 Identities=24% Similarity=0.324 Sum_probs=120.7
Q ss_pred cc-CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-cchhhHHHH----HHHHhHHHH
Q 008624 138 FN-LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-PGLGVLLVG----RLLYGLGIG 211 (559)
Q Consensus 138 ~~-~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~----r~l~G~~~g 211 (559)
.| .+....+.+.+...+.-...-...+++..|+|.|++++++.+.+++=..+.+.. ++.+...+. ..+.|+..|
T Consensus 237 ~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~ 316 (400)
T PF03825_consen 237 LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFG 316 (400)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHH
Confidence 45 567778888888888888999999999999999999999999999998888887 565544443 456999999
Q ss_pred hhhhhHhHHHhhcCCCCccchhhhHHHH-HHHHHHHHHHHHhhhhcCCCc-----chHHHHHhhhHHHHHHHHHH-hccC
Q 008624 212 LAMHGAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGM-WSLP 284 (559)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~-----~wr~~f~~~~~~~~~~~~~~-~~~~ 284 (559)
........++.+..|++.|+++.+++.. ..++|..+|..++|++.+..+ .|...+.+.+++.++..++. ++++
T Consensus 317 ~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 317 LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999876 578999999999999998752 35556666666666655554 3444
Q ss_pred C
Q 008624 285 P 285 (559)
Q Consensus 285 e 285 (559)
|
T Consensus 397 ~ 397 (400)
T PF03825_consen 397 P 397 (400)
T ss_pred C
Confidence 4
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=119.92 Aligned_cols=140 Identities=14% Similarity=0.040 Sum_probs=117.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh--------------------cchh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--------------------PGLG 197 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--------------------~~~~ 197 (559)
+|.+..+.|++.+++.++..++.++.|+++|++++++.+..+.++.+++.+..++. .+.+
T Consensus 256 ~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1140)
T PRK06814 256 LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGW 335 (1140)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccH
Confidence 78899999999999999999999999999999887777666666666655544443 6778
Q ss_pred hHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHH
Q 008624 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 277 (559)
Q Consensus 198 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~ 277 (559)
.++++.++.|++.+...+...+++.+.+|+++||+++|+.+....+|..+|+++++.+.+...++...|++.+++.++..
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVA 415 (1140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999887543367777766655544433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.1e-09 Score=108.50 Aligned_cols=156 Identities=13% Similarity=-0.032 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHH
Q 008624 361 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 440 (559)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 440 (559)
+++...+..+.+.........-.+.+-+++++++ .+.|++.+.+.++..++.++.+++.||.+||+.+.++.++.+++.
T Consensus 34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss-~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ 112 (633)
T TIGR00805 34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLST-SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS 112 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCC-CcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence 3333333444443333344455566677788887 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC---------------------------------------------chhHHHHHHHHHHHHHhhcccccc
Q 008624 441 LLLSAYYKILG---------------------------------------------GFPLVAVSALLLYVGCYQISFGPI 475 (559)
Q Consensus 441 ~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 475 (559)
+++++.....+ ...+..+++.-++.+.......+.
T Consensus 113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~ 192 (633)
T TIGR00805 113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL 192 (633)
T ss_pred HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence 88876421100 001223333333444444455566
Q ss_pred cceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh
Q 008624 476 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF 517 (559)
Q Consensus 476 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 517 (559)
..+++.|.+|+++|+...|+.+....+|..+++.+.+.+.+.
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 778999999999999999999999999999999999988754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-08 Score=89.56 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=114.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-------cchhhHHHHHHHHhHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-------PGLGVLLVGRLLYGLGI 210 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-------~~~~~l~~~r~l~G~~~ 210 (559)
+|.|.+|...+.++..+|..+ .++.|.+.|++|++.++++|.+...+|..+...+ .++|.+.+..++.|.+.
T Consensus 32 l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~ 110 (250)
T PF06813_consen 32 LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSS 110 (250)
T ss_pred hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccH
Confidence 999999999999999999987 4889999999999999999999999998877652 46788888888888888
Q ss_pred HhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCC
Q 008624 211 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 285 (559)
Q Consensus 211 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 285 (559)
+.....+.....+.|| ++||++.|+.-...+++..+-..+...+.+.. .-+..+.......++.++..+++++
T Consensus 111 ~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~-~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 111 CWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD-PSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHHhhheec
Confidence 7777777777778887 57999999999999999888777766655553 4455555555555555555555544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-08 Score=98.19 Aligned_cols=135 Identities=13% Similarity=-0.059 Sum_probs=99.1
Q ss_pred chhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHH
Q 008624 377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456 (559)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (559)
.....+.|.+.++++.++ .+.++......++..++.++.|++.||+|||+.+..+..+..++.+++..... ..+.+.
T Consensus 43 ~~~~~~~p~i~~~~~~s~-~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~--a~~~~~ 119 (438)
T PRK10133 43 NLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMNYTL 119 (438)
T ss_pred HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--cCCHHH
Confidence 446667788878888887 89999999999999999999999999999999999999999888876532111 123333
Q ss_pred HHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH
Q 008624 457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515 (559)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 515 (559)
.+...++.+.+.+... +....++.+..|++++...+++.+....+|..+++.+.+.+.
T Consensus 120 ll~~r~l~G~g~g~~~-~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 120 FLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHH-hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333 333456667766666666899999999999999998876544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-09 Score=105.05 Aligned_cols=181 Identities=15% Similarity=0.035 Sum_probs=118.2
Q ss_pred cCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhh
Q 008624 354 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 433 (559)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 433 (559)
+++++...+..+++..............-++.+..+.|.++ ...++.....++..+..++.|+++|.+|||..++.+.
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~--~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~ 115 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSD--NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGS 115 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCc--cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Confidence 44444444433444333333323333334456667787764 7778888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHH
Q 008624 434 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 513 (559)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 513 (559)
++..++.++.+.. ++....+....+.+.+.+. .......++|+.|.+.|..+.++.....-+...+++.+...
T Consensus 116 ~l~vvG~Iv~atA-----~~~~~~iag~~l~GvgaG~--~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~ 188 (599)
T PF06609_consen 116 LLGVVGSIVCATA-----QNMNTFIAGMVLYGVGAGV--QELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL 188 (599)
T ss_pred HHHHhHHHHhhcC-----CcHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH
Confidence 9999999888753 3334444445554444332 22344568999999999888777665544444456666655
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008624 514 LKVFIHFSIKMVSTWFMILLFDWLVQFCRS 543 (559)
Q Consensus 514 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (559)
+....+|.|.+.+......+..++.+++++
T Consensus 189 ~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 189 FAAHSGWRWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred hccCCCcchHHHHHHHHHHHHHHHHHHHhC
Confidence 555668998888776655555544444433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-07 Score=95.86 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=119.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhcc--------hhhHHHHHHHHhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPG--------LGVLLVGRLLYGL 208 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~--------~~~l~~~r~l~G~ 208 (559)
+|.+.+....+...+....-+..+++|.++|+ +||++.++++.++..+|.++.+++.. ....+++-.+.++
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 68888999999999999999999999999996 59999999999999999988877421 1236677788889
Q ss_pred HHHhhhhhHhHHHhhcCCCC---ccchhhhHHHHHHHHHHHHHHHHhhhhcCCC------cchHHHHHhhhHHHHHHHHH
Q 008624 209 GIGLAMHGAPLYIAETCPSQ---IRGTLISLKELFIVLGILLGYFVGSFQINAV------GGWRYMYGLSAPLALLMGIG 279 (559)
Q Consensus 209 ~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~------~~wr~~f~~~~~~~~~~~~~ 279 (559)
|.|++-+...+...|.++++ +|-..+.++..+.++|.++++.+.+++.+.. .+|...|.+.++..++.+++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754 3667888899999999999999988876321 26999999998888877665
Q ss_pred Hh
Q 008624 280 MW 281 (559)
Q Consensus 280 ~~ 281 (559)
..
T Consensus 178 f~ 179 (654)
T TIGR00926 178 FM 179 (654)
T ss_pred HH
Confidence 54
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-08 Score=99.36 Aligned_cols=162 Identities=15% Similarity=0.053 Sum_probs=102.5
Q ss_pred chhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhc-CchhH
Q 008624 377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL-GGFPL 455 (559)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 455 (559)
+.+..+.+.+.++++++. .+.+.+...... ...+.++.|++.||+|+|+++.++.++..++.+++++..... ..+.+
T Consensus 44 y~fsv~s~~L~~~lgls~-~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~ 121 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQ-RDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV 121 (591)
T ss_pred HHHHHHHHHHHHHhCcCH-HHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence 345567777778888887 566666655333 334566789999999999999999999999998887642110 01223
Q ss_pred HHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHH
Q 008624 456 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFD 535 (559)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 535 (559)
...+..++.+.+.+ ...+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...+++.++..++..
T Consensus 122 ~l~l~r~l~G~G~~-~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ 198 (591)
T PTZ00207 122 RLSVYNGLMTLGCM-LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVG 198 (591)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Confidence 22223333332222 222233355677787 789999999999999999875555555443 245555555555555555
Q ss_pred HHHHHhhc
Q 008624 536 WLVQFCRS 543 (559)
Q Consensus 536 ~~~~~~~~ 543 (559)
++...+.+
T Consensus 199 ll~~~~vr 206 (591)
T PTZ00207 199 ILAIVFMR 206 (591)
T ss_pred HHHHhhee
Confidence 54444443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-09 Score=97.89 Aligned_cols=123 Identities=16% Similarity=0.134 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccc
Q 008624 396 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 475 (559)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (559)
.-+|++...+.+..++.++..|.++||+|||.++.++.+..++..++.+. ......++..=+.++.+....+ +
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~------S~~F~afv~aR~l~Gi~kgnl~-v 140 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL------SRNFAAFVLARFLGGIFKGNLS-V 140 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhccCchH-H
Confidence 57889999999999999999999999999999999999999887777665 2333333333445555555554 5
Q ss_pred cceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH---hhhhhHHHH
Q 008624 476 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV---FIHFSIKMV 525 (559)
Q Consensus 476 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~---~~g~~~~~~ 525 (559)
..++++|++++++|+.+++.+.....+|-++||.++|++.. ..|.++.+.
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~al 193 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFAL 193 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHH
Confidence 55999999999999999999999999999999999999987 566555555
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-09 Score=94.52 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchh
Q 008624 154 YGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL 233 (559)
Q Consensus 154 l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 233 (559)
+.-.-|.++.+.+.||+|||+.|..+.+++++..++.-.+.+-..+.+.-+..-++..+.+.+.+.|..|.+|.+-|+..
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence 45667889999999999999999999999999999887766544444444444444455677899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCch
Q 008624 234 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 287 (559)
Q Consensus 234 ~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 287 (559)
.|.-....-+|.++.|+++ ...+. +--.+..+.+.+.++..+...++|-.+
T Consensus 472 vGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 472 VGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeecc
Confidence 9999999999999999998 33333 334566777777788888887777544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.7e-08 Score=94.12 Aligned_cols=138 Identities=11% Similarity=0.005 Sum_probs=109.3
Q ss_pred hhhhchHHHHHHcCCCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHH
Q 008624 378 SVLYYAGPILQSAGFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456 (559)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (559)
...+..|.+.++.|++. .+ .+.+......+..+..+.+|++.||+|.|+++..+.+.-.+..+++++.. ....
T Consensus 44 n~s~a~p~L~~elglT~-~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-----Sl~~ 117 (511)
T TIGR00806 44 GESFITPYLLTVLNFTE-ETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-----SVWH 117 (511)
T ss_pred hHHHHHHHHHHHcCCCH-HHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 34455666677899988 56 99999999999999999999999999999999999988888888887742 2333
Q ss_pred HHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHH
Q 008624 457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKM 524 (559)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~ 524 (559)
..++-++.+.+-+..+ ....++...+|+++|+++.|+.++...+|.++++.+.+. ...+||....
T Consensus 118 L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~ 182 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS 182 (511)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence 3333444444444444 555888899999999999999999999999999999998 5667776543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=90.57 Aligned_cols=133 Identities=18% Similarity=0.070 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcC
Q 008624 146 GLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC 225 (559)
Q Consensus 146 g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 225 (559)
+.+.-+-.+...+.-+++.+..+|+..+.=+....+++.++.++.+++++.+.=+++-++.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 34444455566666677778888887554455666788889999999999999999999999999988888888644 55
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc
Q 008624 226 PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 283 (559)
Q Consensus 226 ~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 283 (559)
++ ...+-+..+.+.+.++|+..-..+.....+-|..+++..++.++..+..+++
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 3578888888888888888766655521244778888777776665555543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=98.13 Aligned_cols=161 Identities=17% Similarity=0.037 Sum_probs=106.8
Q ss_pred hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCchhh-hhhhHHHHHHHHHHHHHHhhcCc
Q 008624 379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-----GRRPLL-IGGVCGIALSLLLLSAYYKILGG 452 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 452 (559)
...-.|.++++.|.+. .+.++.... .+...+ .++.|++.||+ |||+.+ ..+.++.++....+.+... .
T Consensus 7 ~~~~~~~~~~~~g~s~-~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---~ 80 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSL-KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---S 80 (356)
T ss_pred HHhHHHHHHHHcCCCH-HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc---c
Confidence 4445677888999887 677777544 333343 88999999998 788864 5555555555545443211 1
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh--------hhHHH
Q 008624 453 FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH--------FSIKM 524 (559)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g--------~~~~~ 524 (559)
.....+....+..+.......+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..| |...+
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF 160 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence 2222222222222233333345556788999999999999999999999999999999999988888 88888
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 008624 525 VSTWFMILLFDWLVQFCRSCW 545 (559)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~ 545 (559)
.+.+++.++..+..++..++.
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 777766655444444334443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=95.56 Aligned_cols=139 Identities=37% Similarity=0.577 Sum_probs=115.6
Q ss_pred ccCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcc--hhhHHHHHHHHhHHHHhh
Q 008624 138 FNLSA--VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~--~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l~G~~~g~~ 213 (559)
++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+ .+.+++.|+++|++.+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 111 (338)
T COG0477 32 LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGL 111 (338)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHH
Confidence 44444 58899999999999999999999999999999888888776777777777776 899999999999999999
Q ss_pred hhhHhHHHhhcCCC-CccchhhhHHHH-HHHHHHHHHHHHhhhhcCC-CcchHHHHHhhhHHHHHH
Q 008624 214 MHGAPLYIAETCPS-QIRGTLISLKEL-FIVLGILLGYFVGSFQINA-VGGWRYMYGLSAPLALLM 276 (559)
Q Consensus 214 ~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~~~~~l~~~-~~~wr~~f~~~~~~~~~~ 276 (559)
.+...+++.|++++ ++|+...+.... ...+|.++++.+++.+... ..+||+.|.+........
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 112 LPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99999999999987 678999999888 5888999998887766554 227999766666555443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-08 Score=87.74 Aligned_cols=144 Identities=20% Similarity=0.162 Sum_probs=110.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH-HHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV-LYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
||+|+...+-+.+.-....++.+++.|.++||+|++...+.+.. .+.++-....+ +++.=+.+..+.|+........
T Consensus 295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcs 372 (459)
T KOG4686|consen 295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACS 372 (459)
T ss_pred hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999977766544 44444444444 4555567788889887777666
Q ss_pred HhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHH--HH-HhhhHHHHHHHHHHhcc
Q 008624 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY--MY-GLSAPLALLMGIGMWSL 283 (559)
Q Consensus 217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~--~f-~~~~~~~~~~~~~~~~~ 283 (559)
....++-..|+++.|++.|..+...++|..+.|++++.+++..+++-+ .| .+.+.+++....+.+.+
T Consensus 373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 777888889999999999999999999999999999999987644433 34 33444444443344443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.4e-09 Score=96.89 Aligned_cols=145 Identities=14% Similarity=0.045 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccc
Q 008624 396 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 475 (559)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (559)
.+.|++++...+..++.+++.|.+.||+|+|..+++|+.++..+.+++++. +.+..+++.=...+....+....
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg------~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG------NSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc------chhHHHHHHHHHhhhhHHHHHhh
Confidence 689999999999999999999999999999999999999999999999873 33333333333333333333344
Q ss_pred cceeecccCCcch-hhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 008624 476 SWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWE 546 (559)
Q Consensus 476 ~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (559)
..+++++.+|.+. |++++|+...+..+|-.++|.++|.+++..|+..+|++.++++++-..+.++.....+
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 5578889998765 6999999999999999999999999999999999999999988888777766654433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=94.76 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh--hcchhhHHHHHHHHhHHHHhhhhhHhH
Q 008624 142 AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY--APGLGVLLVGRLLYGLGIGLAMHGAPL 219 (559)
Q Consensus 142 ~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~ 219 (559)
+...+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777888899999999999999999999888766654443322 356777888889999999999999999
Q ss_pred HHhhcCCC-------CccchhhhHHHHHHHHHHHHHHHHhhhhcCCC
Q 008624 220 YIAETCPS-------QIRGTLISLKELFIVLGILLGYFVGSFQINAV 259 (559)
Q Consensus 220 ~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 259 (559)
+++|..+. ++.|..++.......+|..+|+.+++.+.+..
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998862 33466788888889999999999998876543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.1e-07 Score=93.30 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=95.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-----hcchhhHHHHHHHHhHHHHhhhh
Q 008624 141 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 141 s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~ 215 (559)
+....+++.+...++..++.+++++++||+|+|+.+.++.++.+++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778777889999999999999999999999888877766655432 34567777788889999999999
Q ss_pred hHhHHHhhcCC-------CCccchhhhHHHHHHHHHHHHHHHHhhhhcC
Q 008624 216 GAPLYIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQIN 257 (559)
Q Consensus 216 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 257 (559)
...++++|..+ .++.|..++......-+|..+++.+.|.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999966 3344668899999999999999999888765
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.7e-08 Score=93.62 Aligned_cols=152 Identities=17% Similarity=0.133 Sum_probs=111.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Q 008624 390 AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCY 468 (559)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (559)
+|++. .++..+...+....-...+++||++||+ |+|+.+..+.+++.++.++++... ........+.+.++. ..
T Consensus 56 Lg~~~-~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~L~~I~-iG 130 (498)
T COG3104 56 LGFDE-THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIGLALII-VG 130 (498)
T ss_pred CCcCh-HhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHHHHHHH-hc
Confidence 33777 5555566666666667788999999995 999999999999999999988732 012233333333333 33
Q ss_pred hcccccccceeecccCCcc--hhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 008624 469 QISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWE 546 (559)
Q Consensus 469 ~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (559)
...+=+....++.|++|++ +|-.++++..+..++|+.++|.+.+++.++.||...|...++......+..+..++..+
T Consensus 131 ~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~ 210 (498)
T COG3104 131 TGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVK 210 (498)
T ss_pred cccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhc
Confidence 3344455667888888754 36778888888899999999999999999999999998888887777776666655443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.2e-08 Score=96.36 Aligned_cols=116 Identities=21% Similarity=0.240 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--chhhHHHHHHHHhHHHHhhhhhHhHH
Q 008624 143 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMHGAPLY 220 (559)
Q Consensus 143 ~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 220 (559)
...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ +.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5778888899999999999999999999999999999999999999988876 99999999999999999999999999
Q ss_pred HhhcCCC-------CccchhhhHHHHHHHHHHHHHHHHhhhhcCC
Q 008624 221 IAETCPS-------QIRGTLISLKELFIVLGILLGYFVGSFQINA 258 (559)
Q Consensus 221 i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 258 (559)
++|..+. ++.|..+++......+|..+++.+.+.+.+.
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999873 4458889999999999999999988877543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-07 Score=91.94 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=109.3
Q ss_pred cchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh----hcCCchhhhhh-hHHHHHHHHHHHHHHhhc
Q 008624 376 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD----DLGRRPLLIGG-VCGIALSLLLLSAYYKIL 450 (559)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 450 (559)
+.....+.+.|++..|.+. ...+.+.....+.+++..++.|+++| |+|||+..+.. .+...+++.++.......
T Consensus 20 ~~l~~~~l~~yl~~lg~~~-~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPH-AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 3445667777889999877 88999999999999999999999999 59999987764 444555555544321100
Q ss_pred --------C-chh---HHHHHHHHHHHHHhhcccccccceeecccCCcchh--hhHHHHHHHHHHHHHHHHHHhhHHh--
Q 008624 451 --------G-GFP---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR--GRGISLAVLTNFGSNAIVTFAFSPL-- 514 (559)
Q Consensus 451 --------~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~i~~~~~g~~-- 514 (559)
. ... +..+..+.+..........|. .+++.|..|+++| +.+.++.+...++|+.+++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0 001 122222333333444344444 4889999998765 5789999999999999999988764
Q ss_pred HHhh-------------hhhHHHHHHHHHHHHHHHHHHHhhcc
Q 008624 515 KVFI-------------HFSIKMVSTWFMILLFDWLVQFCRSC 544 (559)
Q Consensus 515 ~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (559)
.+.+ +....|.+.+++.++..++..+..+|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E 220 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE 220 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence 2222 34455665555555555555555444
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=83.71 Aligned_cols=144 Identities=18% Similarity=0.071 Sum_probs=101.2
Q ss_pred HHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhc
Q 008624 371 QQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL 450 (559)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (559)
...+..+.+..|.|.+-++.+++. .+...+.....++..+ ++..|.+.|++|.+.++.++.+...++..++.......
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq-~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~ 90 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQ-SQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR 90 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCH-HHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 334455667889999888899987 7788888888888776 48889999999999999999999999998887654322
Q ss_pred Cc-hhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh
Q 008624 451 GG-FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF 517 (559)
Q Consensus 451 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 517 (559)
-. .+.+.+.+..+..+.....+.........+.+| ++||++.|+.-....+++.+...+...+...
T Consensus 91 i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 91 IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 11 233333333333222222222222233446788 6899999999999999988888877666554
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-07 Score=93.56 Aligned_cols=147 Identities=17% Similarity=0.168 Sum_probs=119.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh----------hcchhhHHHHHHHHh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----------APGLGVLLVGRLLYG 207 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~----------~~~~~~l~~~r~l~G 207 (559)
+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+...+ .++.+.++..-++.+
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~ 362 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE 362 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence 8999999999999999999999999999999999999999999999988765431 134445666678999
Q ss_pred HHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcc-----hHHHHHh---hhHHHHHHHHH
Q 008624 208 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG-----WRYMYGL---SAPLALLMGIG 279 (559)
Q Consensus 208 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~-----wr~~f~~---~~~~~~~~~~~ 279 (559)
++.+........++.+..|++++|...+++....++|..+++.+++.+.+.. | .+..+.. ..+..++.+..
T Consensus 363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~-g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI-GITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987754 3 3333332 23333344444
Q ss_pred HhccCC
Q 008624 280 MWSLPP 285 (559)
Q Consensus 280 ~~~~~e 285 (559)
.+++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 456775
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.2e-07 Score=83.25 Aligned_cols=133 Identities=11% Similarity=-0.039 Sum_probs=101.5
Q ss_pred hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHH
Q 008624 379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 458 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (559)
.-...|.+.+.+..+. .+++++......+..+.++..+++.+|+|+|+-++.++.++++++.++..... ...+..+
T Consensus 32 ~diLip~l~~~f~ls~-~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~---~~~y~~F 107 (422)
T COG0738 32 NDILIPHLKEVFDLTY-FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS---SKSYGFF 107 (422)
T ss_pred chhhHHHHHHHhCccH-HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh---hhhHHHH
Confidence 3345566667777777 88999999999999999999999999999999999999999999998864432 2222222
Q ss_pred HH-HHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH
Q 008624 459 SA-LLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV 516 (559)
Q Consensus 459 ~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 516 (559)
.. +++...+.+ ........++..+.|++....-+.+.+.++.+|++++|.+.+.+..
T Consensus 108 L~~lFila~Gi~-~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 108 LVALFILASGIG-LLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHhhhH-HHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 22 233322222 2333445677788888888889999999999999999999999887
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-07 Score=84.85 Aligned_cols=178 Identities=25% Similarity=0.210 Sum_probs=137.2
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-ch
Q 008624 94 FSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GR 172 (559)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-Gr 172 (559)
|+.+.-|.+.+...+-.+.++...++ +|.+..| -|+|..+.|++.+...+.....++....+++|. .+
T Consensus 205 w~~~~aW~vtLfmGlqS~~~Y~~~~W----LP~ili~-------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~ 273 (395)
T COG2807 205 WRSPLAWQVTLFMGLQSLLYYIVIGW----LPAILID-------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ 273 (395)
T ss_pred ccCchhHHHHHHHHhhHHHHHHHHHH----HHHHHHH-------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444556566666655665555555 4555555 699999999999999999999999999999965 57
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCC-ccchhhhHHHHHHHHHHHHHHHH
Q 008624 173 KRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ-IRGTLISLKELFIVLGILLGYFV 251 (559)
Q Consensus 173 r~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~g~~~ 251 (559)
|+..+....++.++.+.+.+.+.-..++- -++.|+|.|..++.+..++.+..+.. +-++..+..+....+=..+||.+
T Consensus 274 r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l 352 (395)
T COG2807 274 RPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWL 352 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhh
Confidence 88888888888888888878765443333 49999999999999999999887654 44555666666666667789999
Q ss_pred hhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc
Q 008624 252 GSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 283 (559)
Q Consensus 252 ~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 283 (559)
.|++-|..++|+...+..+...++..+.-+..
T Consensus 353 ~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 353 FGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred HhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998899999988888887776665543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=91.87 Aligned_cols=151 Identities=12% Similarity=-0.101 Sum_probs=121.0
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhh
Q 008624 390 AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQ 469 (559)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (559)
..++. .+-+++......+.+++.+.+|++.||+|.|+++..+.++.+++.++..+... ...+.++++=++-+.+.+
T Consensus 68 ~~ws~-~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~---~~~~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 68 YDWSS-TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS---IGFYLLLVLRFLQGLGQG 143 (466)
T ss_pred ecCCH-HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---hcchhhHHHHHHhHHHHh
Confidence 34454 78889999999999999999999999999999999999999999988887653 222333333334444444
Q ss_pred cccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh-hhhhHHHHHHHHHHHHHHHHHHHhhccc
Q 008624 470 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF-IHFSIKMVSTWFMILLFDWLVQFCRSCW 545 (559)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (559)
. ..|....+..+-.|+.+|++..++..+..++|.+++-.+.|.+.+. .||...+.+.+.+.++..++++++....
T Consensus 144 ~-~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~ 219 (466)
T KOG2532|consen 144 V-LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDS 219 (466)
T ss_pred H-HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3 4456668899999999999999999999999999999999999999 9999999988888877777666665533
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-06 Score=81.71 Aligned_cols=120 Identities=24% Similarity=0.359 Sum_probs=101.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--chhhHHHHHHHHhHHHHhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 215 (559)
+|.++.+..+.......+..++.+++.++++|+|+|+++.++.++.+++.++.-+.+ +.+.+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 566777788888888888888899999999999999999999999999999988865 788899999999999999999
Q ss_pred hHhHHHhhcCC-------CCccchhhhHHHHHHHHHHHHHHHHhhhhcC
Q 008624 216 GAPLYIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQIN 257 (559)
Q Consensus 216 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 257 (559)
...++++|..+ .+.-|...+......=+|..++..+.++...
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988865 2344777788777777888888877666554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.4e-06 Score=75.04 Aligned_cols=310 Identities=16% Similarity=0.153 Sum_probs=164.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
++....++|.+.-+.+-...+...+.|.++|+-|||+.-+.-++.+.+++ +.-.++.|-.++++|++-|+..+..+..-
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaF 145 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAF 145 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHH
Confidence 67788899998888888889999999999999999997655444444433 33457899999999999999999888887
Q ss_pred hHH-HhhcCCCCccchhhhHHH--------HHHHHHHHHHHHHhhhhcCCC-cchHHHHHhhhHHHHHHHHHHhc-cCCc
Q 008624 218 PLY-IAETCPSQIRGTLISLKE--------LFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWS-LPPS 286 (559)
Q Consensus 218 ~~~-i~~~~~~~~r~~~~~~~~--------~~~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~~~~~~~~~~~~~-~~e~ 286 (559)
-++ +.|.. ++|+.-.-+.. .+..+=.+++.+.+..+.+.. .|--.+|-..+.+..+...+.+- .-|.
T Consensus 146 EsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~EN 223 (454)
T KOG4332|consen 146 ESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSEN 223 (454)
T ss_pred HHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhc
Confidence 665 45554 23333222221 122222333334444444332 13344555554444443332221 1110
Q ss_pred hHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHH
Q 008624 287 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 366 (559)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (559)
.+++ .+..+..... +...+.+..+. ++.+...
T Consensus 224 -----------------------------ygdp-------s~~kdlltqf---------~gaa~aiaSD~---ki~LLG~ 255 (454)
T KOG4332|consen 224 -----------------------------YGDP-------SENKDLLTQF---------KGAARAIASDE---KIALLGA 255 (454)
T ss_pred -----------------------------cCCh-------hhhHHHHHHh---------hHhHHHHhcch---HHHHHHH
Confidence 0000 0000000000 00111222222 1222222
Q ss_pred HHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--hhhhhhhHHHHHHHHHHH
Q 008624 367 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR--PLLIGGVCGIALSLLLLS 444 (559)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~ 444 (559)
+........+..+..|.|.+-.+-.. .--|.+.+.+.+..++|+-+..++..|-..| ..+.+.+++.++.+.+..
T Consensus 256 iqsLFE~smytFVFLWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpi 332 (454)
T KOG4332|consen 256 IQSLFEGSMYTFVFLWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPI 332 (454)
T ss_pred HHHHHhhhhheeeeeecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence 33333333444555666654322111 2467777777788888888887777664443 344444544444444333
Q ss_pred HHHhhc--CchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHH
Q 008624 445 AYYKIL--GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG 502 (559)
Q Consensus 445 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 502 (559)
...... ...+...++..+++-.+.+..+..+ .-+-.+..|.+.|++.+-+...--++
T Consensus 333 lt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSi-mkmRsqyIPEearstimNfFRvPLni 391 (454)
T KOG4332|consen 333 LTSSVSPSKESPSESLIGFCLFEACVGLFWPSI-MKMRSQYIPEEARSTIMNFFRVPLNI 391 (454)
T ss_pred HHhccCCCcCCchHHHHHHHHHHHHHhhcchHH-HHHHHhhCCHHHHhhhhhheechhhH
Confidence 322111 1233444556666666666555444 35667778988888765554433333
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.1e-06 Score=76.82 Aligned_cols=350 Identities=13% Similarity=-0.022 Sum_probs=176.6
Q ss_pred HHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhchhHHHHH-HHHH
Q 008624 109 GGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD-----FLGRKRELII-AAVL 182 (559)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d-----r~Grr~~~~~-~~~~ 182 (559)
.....|.-.+... .+|.+.+. =|+|.++.+...-++. -..--++|.++.| |+||||..++ +..+
T Consensus 39 LYllQGiP~GL~~-~iP~lL~a-------k~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~l 108 (510)
T KOG3574|consen 39 LYLLQGIPLGLIG-AIPLLLQA-------KGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYL 108 (510)
T ss_pred HHHHcCCchhHhh-hhHHHhcC-------CCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHH
Confidence 3456666666666 66766654 4777777765543332 1233568899999 9999986543 3344
Q ss_pred HHHHHHHHHhh-----------cchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHH
Q 008624 183 YALGALTTAYA-----------PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV 251 (559)
Q Consensus 183 ~~i~~~~~~~~-----------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~ 251 (559)
.+....+.+.- ++...+....++.-+..+.--.+.-.+.-.+..+++-|.+......+.+.|.++|..+
T Consensus 109 lG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 109 LGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 33333333321 2233333445666677777777778888888889998888888777777777777665
Q ss_pred hhhhcCC------CcchH---------HHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhc
Q 008624 252 GSFQINA------VGGWR---------YMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLR 316 (559)
Q Consensus 252 ~~~l~~~------~~~wr---------~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (559)
--.+... ..+|. ..+++.+.+.++.-.+..+..+++.... .
T Consensus 189 fLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~-------------~----------- 244 (510)
T KOG3574|consen 189 FLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESV-------------D----------- 244 (510)
T ss_pred eeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhh-------------h-----------
Confidence 4333220 11222 1233444444444444444333221000 0
Q ss_pred cCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCch
Q 008624 317 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAA 396 (559)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (559)
+++ .......-+-++++++-+..+.+.......=+.. ...-...+.-+-+.|.+. .
T Consensus 245 -------------~e~------~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf----~a~da~t~LkLle~Gv~k-e 300 (510)
T KOG3574|consen 245 -------------EEL------ELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGF----QAADALTSLKLLEHGVPK-E 300 (510)
T ss_pred -------------hhh------hcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHh----hhhhhccchHHHHcCCCh-h
Confidence 000 0000111123456666666655544333222221 122333444566778776 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhh------hhhhHHHHHHHHHHHHHHhhcC---chhHHHHHH----HHH
Q 008624 397 DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL------IGGVCGIALSLLLLSAYYKILG---GFPLVAVSA----LLL 463 (559)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~ 463 (559)
..++...+..-..++.....|.+... .|++. ..-+....+...+......... ..+....++ ..+
T Consensus 301 ~Lal~~v~~~plqI~l~~~~gk~ta~--~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~ 378 (510)
T KOG3574|consen 301 ELALIAVPLVPLQIALPLYIGKWTAG--PRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAF 378 (510)
T ss_pred HheeeeeehhhHHHhhhhhheeecCC--CCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHH
Confidence 55444444333344444443333321 12111 1111111111111111111111 111111111 112
Q ss_pred HHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh
Q 008624 464 YVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH 519 (559)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g 519 (559)
..+.....+. ...+..+++.++...|+.+.+.|+..++|+-.-..+...+.|.++
T Consensus 379 ~~~~~ts~fv-~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 379 HQVFVTSMFV-SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred hhhHHHHHHH-HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 2222222222 233677888899999999999999999999888888888877543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-08 Score=92.75 Aligned_cols=144 Identities=19% Similarity=0.224 Sum_probs=128.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
.+-.+...|........+-.+.-++.+++.+|+|+-+++.+++++..+=.+..+..+|.|+.+...+++|+..+..+...
T Consensus 401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI 480 (618)
T ss_pred cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence 56566667777777888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCCCccchhhhHHH-HHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 218 PLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
.+|+++..||+-|..+.++.+ ...++|--+|.++||.+.+.+ +=|..|.+.++.+++.+++...
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999975 457889999999999999988 8899999888888776665543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-06 Score=78.76 Aligned_cols=144 Identities=22% Similarity=0.196 Sum_probs=121.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHh-hhchhHHHHHHHHHHHHHHHHHH---hhcchhhHHHHHHHHhHHHHhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD-FLGRKRELIIAAVLYALGALTTA---YAPGLGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d-r~Grr~~~~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~ 213 (559)
||++..+...++.....|..++-...|++.. |.++|+.-.+|+.+..++..+.. ...+.+.+...-++.|++.|..
T Consensus 239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f 318 (403)
T PF03209_consen 239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLF 318 (403)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHH
Confidence 8999999999999999999999999999888 67888888888888877766544 4567889999999999999999
Q ss_pred hhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCC---------CcchHHHHHhhhHHHHHHHHHHh
Q 008624 214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---------VGGWRYMYGLSAPLALLMGIGMW 281 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~---------~~~wr~~f~~~~~~~~~~~~~~~ 281 (559)
.....+...|...+++.|..+|.+.....++..+|..+++.+.|. ..++-..|.+.++..++.+++..
T Consensus 319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887542 12566667777766666555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.4e-07 Score=81.22 Aligned_cols=340 Identities=16% Similarity=0.154 Sum_probs=195.5
Q ss_pred ccCChhHHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLG-LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g-~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
.|+++.++. =+.-...-.+.+.-.+.=.+.|..--|+++++-.+...+.-++.-+.++.+.+-+.-++.|...+ ...+
T Consensus 36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIA 114 (433)
T KOG3810|consen 36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIA 114 (433)
T ss_pred CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHh
Confidence 577777653 11222223345555566678998888999888777777777788889999999999999999866 5678
Q ss_pred HhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCc-chHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhh
Q 008624 217 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV 295 (559)
Q Consensus 217 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 295 (559)
-++++-+-.+++++.++.+...+..-.|...|..++-.++...+ +....=.+......+..++.+++|..+|-..-+..
T Consensus 115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~ 194 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL 194 (433)
T ss_pred hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc
Confidence 88999999999999999999999999999999999888776541 23333334444444455566777776542221100
Q ss_pred cCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhC
Q 008624 296 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITG 375 (559)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (559)
.. +.........++ ..+..+.... ....-...+.+..++|.+...-+- +....++
T Consensus 195 ~~-----------~~~v~~~e~~~~-----~~~~~~~l~~-----~~~~l~~~l~~~y~np~ll~WSlW----wAl~scg 249 (433)
T KOG3810|consen 195 ED-----------KISVGDLEEMNP-----QASYMSYLRG-----AFVLLWRDLQECYSNPRLLKWSLW----WALASCG 249 (433)
T ss_pred cc-----------cceeccchhcCc-----cchhhHHHHH-----HHHHHHHHHHHHhcCchhhhhHHH----HHHhhch
Confidence 00 000000000000 0000000000 000111234455666654433322 2222234
Q ss_pred cchhhhchHHHHHHcCC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh--hhHHHHHHHHHHHHHHhhcCc
Q 008624 376 QPSVLYYAGPILQSAGF-SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG--GVCGIALSLLLLSAYYKILGG 452 (559)
Q Consensus 376 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 452 (559)
++-+.+|...+.++..- +...-.|..=++..+.+.++.+..|.+.-++.|..-+.+ +.+..+...+.+.. ..
T Consensus 250 ~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~-----t~ 324 (433)
T KOG3810|consen 250 YYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ-----TQ 324 (433)
T ss_pred hHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc-----cc
Confidence 44577777777776531 111234445566667777888888888766666533333 32222222222221 24
Q ss_pred hhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHH
Q 008624 453 FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 509 (559)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 509 (559)
+-|...+...++...+........ ..+++....+.-|..+|+..++.-+-..+-..
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~ 380 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTFVALILQSILTL 380 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHHHHHHHHHhheE
Confidence 556666667777777766554333 33344446688888899887766554444433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.3e-07 Score=91.27 Aligned_cols=133 Identities=15% Similarity=0.061 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccc
Q 008624 396 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 475 (559)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (559)
....+..++..++.++|.++.|.++||+|||+++..+.++..++.+..++. ..+..+.+.=++.+.+..+....
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------PNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHhhccchhHH
Confidence 577788889999999999999999999999999999999999988776662 34444444444445555555556
Q ss_pred cceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 008624 476 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWL 537 (559)
Q Consensus 476 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 537 (559)
.+.+..|.++++.|+.+..+ ......++.+++...+++.. +|.+.++...+..+...++
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999 88888888899998888877 6777666655555444443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-05 Score=81.51 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcc--hhhHHHHHHHHhHHHHhhhhhHhHH
Q 008624 143 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LGVLLVGRLLYGLGIGLAMHGAPLY 220 (559)
Q Consensus 143 ~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~ 220 (559)
...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.++ .+.+++.-++.|++.+...+...++
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888899999999999999999999887655554444444333322 3344555567788887777777778
Q ss_pred HhhcCC-------CCccchhhhHHHHHHHHHHHHHHHHhhhhcC
Q 008624 221 IAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQIN 257 (559)
Q Consensus 221 i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 257 (559)
+.|..+ +++.|..++......-+|..+|+.+++.+.+
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766 3334555677777788888888888777654
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-05 Score=77.96 Aligned_cols=298 Identities=13% Similarity=0.013 Sum_probs=129.1
Q ss_pred chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhh---hcCC-C-cchHH--HHH
Q 008624 195 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF---QINA-V-GGWRY--MYG 267 (559)
Q Consensus 195 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~---l~~~-~-~~wr~--~f~ 267 (559)
.++..++.-++.|++.+.......++.+ .+|++ .++.+..+.+++.+++.++--. .... . ..++. -|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 4666777778899999988888888766 55654 3455555555555555544221 1111 0 02222 244
Q ss_pred hhhHHHHHHHHHHhccCCchHHH--HHHhhcCCCchhhHHHHHHHHHHhhccCCCC-------CcccHH-HHHHHHHHhh
Q 008624 268 LSAPLALLMGIGMWSLPPSPRWL--LLRAVQGKGSLQEYKEQAISALGKLRRRPPG-------DKLSER-QIEDTLVSLK 337 (559)
Q Consensus 268 ~~~~~~~~~~~~~~~~~e~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~ 337 (559)
+..++.++.++....++..|... .++... ++..+ ++.. ++...+.++ +..... +.....+...
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~~~~~~~~~~~-~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPFARYYLQKKLD-KGAGE---DETK---GELRSKAEQNGIPHGGDQPSPTLVLDWEKEPES 252 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHhhcc-ccccc---cccc---ccccccccccccccccccccccccccccccccC
Confidence 44455555555555666666322 211100 00000 0000 000000000 000000 0000000000
Q ss_pred hcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008624 338 SSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAV 417 (559)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 417 (559)
...++.+.+.+.++++|+ .+...+..++.++..+..+..+...... .+.+.++....-.....+.++..+|+.+..
T Consensus 253 ~~~~~~~~~~~~~~v~kk--i~~~~~~vf~~F~vTL~vFPgv~~~i~~--~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~ 328 (437)
T TIGR00939 253 PDEPQKPLKTSVWVVFTK--VWLLAFSVVFVFTVTLSVFPAITTAVTS--SGLGLSNWFYPIICFLLFNLFDWLGRSLTS 328 (437)
T ss_pred CccchhcccCcHHHHHHH--HHHHHHHHHHHHHHHHHhcCceEEEeec--cCCCCCccHHHHHHHHHHHHHHHHHhhhhh
Confidence 000111223445555553 3444554555555444333333222111 111122212445667778888888888664
Q ss_pred HHhhhcCCc-hhhhhhhHHHHHHHHHHHHHHhhc-------CchhHHHHHHHHHHHHHhhcccccccceeecccCCcchh
Q 008624 418 AKVDDLGRR-PLLIGGVCGIALSLLLLSAYYKIL-------GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 489 (559)
Q Consensus 418 ~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 489 (559)
+.. .-++| +.+.+..++=.+..-++.+..... -.+.+..++..++++...+ ........+..+..++++|
T Consensus 329 ~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG-y~~s~~m~~~p~~v~~~e~ 406 (437)
T TIGR00939 329 KFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG-YLGSLSMCLAPRQVDPHER 406 (437)
T ss_pred eeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh-HHHHHHHHhcCCCCCHHHH
Confidence 431 11222 123222222222222222211110 0233334444443333332 3333445667777888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 008624 490 GRGISLAVLTNFGSNAIVTFA 510 (559)
Q Consensus 490 ~~~~g~~~~~~~~g~~i~~~~ 510 (559)
..+..+......+|-.+|..+
T Consensus 407 e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 407 EVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777776666553
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.4e-06 Score=85.15 Aligned_cols=138 Identities=14% Similarity=0.050 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccc
Q 008624 398 ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISW 477 (559)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (559)
.+++.....+++.++.++.|+++|++|||+.+..+.+...++.++.+.. .+....++.=++.+.+.+.... +..
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----~~~~~l~~GR~l~G~g~G~~~~-~~p 164 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----PSWYQLIVGRILTGLGVGGASV-LAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhccchhhhhh-cch
Confidence 3799999999999999999999999999999999999999999988874 2344444444555444444333 445
Q ss_pred eeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhh--hhhHHHHHHHHHHHHHHHHHHHhhc
Q 008624 478 LMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFI--HFSIKMVSTWFMILLFDWLVQFCRS 543 (559)
Q Consensus 478 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (559)
.+.+|..|++.||...+..+....+|..++ .+.+....+. +|...+....+.+++..+. .++.+
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~p 230 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLP 230 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 899999999999999999998888766666 6666666553 7776666655555544444 34433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.7e-07 Score=63.93 Aligned_cols=80 Identities=21% Similarity=0.180 Sum_probs=72.1
Q ss_pred hhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh
Q 008624 114 GYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA 193 (559)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 193 (559)
|.....+.|.+|.+.++ .++|.++.||+.+++++||.+|.+...++.++..+++.+..+++...+..+.+++.
T Consensus 5 GigRFayTplLP~M~~~-------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD-------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hhHHHHHHhHhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888888877 89999999999999999999999999999999889999999999999999999999
Q ss_pred cchhhHH
Q 008624 194 PGLGVLL 200 (559)
Q Consensus 194 ~~~~~l~ 200 (559)
++++...
T Consensus 78 ~~~~~w~ 84 (85)
T PF06779_consen 78 HSFWLWS 84 (85)
T ss_pred hchHHHh
Confidence 8877543
|
Note that many members are hypothetical proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.36 E-value=9e-06 Score=67.35 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCC
Q 008624 149 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ 228 (559)
Q Consensus 149 ~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 228 (559)
.++......+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-++.|++.+..++....++.+..+++
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~ 121 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE 121 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence 445555677788888899999999999999999998655444 5678889999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhhhhc
Q 008624 229 IRGTLISLKELFIVLGILLGYFVGSFQI 256 (559)
Q Consensus 229 ~r~~~~~~~~~~~~~G~~~g~~~~~~l~ 256 (559)
+|++..+++......+.++|.++...+.
T Consensus 122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 122 TIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999989888888766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00039 Score=71.03 Aligned_cols=143 Identities=20% Similarity=0.148 Sum_probs=112.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhcc---------------------
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPG--------------------- 195 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~~--------------------- 195 (559)
++.+...+.-..+.+.-...+..++.+.++|-| ||-+.+.++.++..++.++..++..
T Consensus 68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~ 147 (571)
T KOG1237|consen 68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP 147 (571)
T ss_pred hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence 777778888888888888888999999999976 8999999999988888665544211
Q ss_pred ----hhhHHHHHHHHhHHHHhhhhhHhHHHhhcCC---CC---ccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHH
Q 008624 196 ----LGVLLVGRLLYGLGIGLAMHGAPLYIAETCP---SQ---IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 265 (559)
Q Consensus 196 ----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 265 (559)
...++.+.-+..+|.|+.-+...++-+|-++ ++ .+...+.++....++|..++..+..+.-++. +|.+-
T Consensus 148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lg 226 (571)
T KOG1237|consen 148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLG 226 (571)
T ss_pred chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceee
Confidence 1256666677888999999999999999998 32 2336788888999999999999888866666 99999
Q ss_pred HHhhhHHHHHHHHHHh
Q 008624 266 YGLSAPLALLMGIGMW 281 (559)
Q Consensus 266 f~~~~~~~~~~~~~~~ 281 (559)
|.+..+..++.+++++
T Consensus 227 f~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 227 FGIPTVLNALAILIFL 242 (571)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9988877776655544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-05 Score=77.54 Aligned_cols=181 Identities=16% Similarity=0.018 Sum_probs=121.1
Q ss_pred hhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHH----HHHHHHHHHHHHHHhhhcCCchhhhhhh
Q 008624 358 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVI----GVFKLVMTWIAVAKVDDLGRRPLLIGGV 433 (559)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 433 (559)
.+......++..+.............+......+.......+...... ++..++.+...|.++||+|||..+....
T Consensus 20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~ 99 (463)
T KOG2816|consen 20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL 99 (463)
T ss_pred hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence 344444444555554443333333333333333332223344444444 6788888999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHH
Q 008624 434 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 513 (559)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 513 (559)
....+..+.+.+. . |+.++ ..-..+++. ......+++.++....+.|....|+.+.....+..++|.+.+.
T Consensus 100 ~~~~l~~~~~~~~------~-~~~~~-~~~l~g~~~-~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~ 170 (463)
T KOG2816|consen 100 FGTILPALCLLFQ------G-YWFFL-LLGLSGGFS-AIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY 170 (463)
T ss_pred HHHHHhHHHHHHH------H-HHHhh-hcccccchh-hhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8777777666652 1 33322 222222222 2333556889999999999999999999999999999999999
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 008624 514 LKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQ 547 (559)
Q Consensus 514 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (559)
+....|....+.+..+..+...+......++...
T Consensus 171 ~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 171 LVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence 9999999888888887777777776666666544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-05 Score=77.10 Aligned_cols=108 Identities=21% Similarity=0.350 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh---cch------hhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCC---ccchhhhHHHHHH
Q 008624 174 RELIIAAVLYALGALTTAYA---PGL------GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ---IRGTLISLKELFI 241 (559)
Q Consensus 174 ~~~~~~~~~~~i~~~~~~~~---~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 241 (559)
|.++++.++..+|.++..++ ... +.++++-++.++|.|+.-|...++++|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788999999999885443 222 67899999999999999999999999999765 4667788999999
Q ss_pred HHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 242 VLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 242 ~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
++|..++..+.+++-++. +|.+.|.+.++..++.++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHHHh
Confidence 999999999999988887 9999999999888877776554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-05 Score=71.10 Aligned_cols=177 Identities=15% Similarity=0.006 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHH
Q 008624 360 AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 439 (559)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 439 (559)
..+..+.+.....+. ...|.-.++++.|++. .+.+.+.........+.+.+.|.+.||+|||+.-+...++..++
T Consensus 38 ~yl~vY~La~~aDWL----QGpY~Y~LY~~yg~~~-~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~s 112 (354)
T PF05631_consen 38 KYLLVYLLAMAADWL----QGPYLYALYESYGFSE-HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLS 112 (354)
T ss_pred HHHHHHHHHHHHHHh----hcchhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 344444444444433 2223334457788887 77888888888888899999999999999999988888888777
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeec----ccCCcchhhhHHHHHHH-HHHHHHHHHHHhhHHh
Q 008624 440 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS----EIFPLRTRGRGISLAVL-TNFGSNAIVTFAFSPL 514 (559)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~g~~~~-~~~~g~~i~~~~~g~~ 514 (559)
++..-. ++...+++.=++.+......+...-.=++. .-+|++..+...+.... .+.+-.+++..+...+
T Consensus 113 cl~k~~------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 113 CLTKHS------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred HHHHhc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 765432 333333333333333333322221111222 23465656666665553 3445556666666677
Q ss_pred HHhhhh--hHHHHHHHHHHHHHHHHHHHhhccccc
Q 008624 515 KVFIHF--SIKMVSTWFMILLFDWLVQFCRSCWEQ 547 (559)
Q Consensus 515 ~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (559)
.+..|. ..++.....+.++..+++.....++.+
T Consensus 187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 777654 556666666655555555544555543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-06 Score=82.03 Aligned_cols=130 Identities=17% Similarity=0.076 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcc----hhhHHHHHHHHhHHHH-hhhhhHhHHHhhcCCCCccch
Q 008624 158 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG----LGVLLVGRLLYGLGIG-LAMHGAPLYIAETCPSQIRGT 232 (559)
Q Consensus 158 i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~----~~~l~~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~ 232 (559)
.+-.+...+.|++|||+..+.|.+++++..+..+...| -..+++...+..+... +.-.....+-+|.+|.+-|+.
T Consensus 363 PGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t 442 (538)
T KOG0252|consen 363 PGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRST 442 (538)
T ss_pred CceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhh
Confidence 35566677899999999999999999999999988766 1223333333222211 122334555689999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhcC-----CCcchHHHHHhhhHHHHHHHHHHhccCCchH
Q 008624 233 LISLKELFIVLGILLGYFVGSFQIN-----AVGGWRYMYGLSAPLALLMGIGMWSLPPSPR 288 (559)
Q Consensus 233 ~~~~~~~~~~~G~~~g~~~~~~l~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~ 288 (559)
.-|+..+..-+|.++|...-..+.+ .. +-|+.|++.+.+.++..+..+++||+..
T Consensus 443 ~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~-g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 443 CHGISAASGKAGAIVGAFGFLYLTDHNYPPNI-GVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred hhhHHHHhccchHHHHHHHhhHhhhccCCccc-cchHHHHHHHHHHHHhHheeEEeecccc
Confidence 9999999999999999999888887 44 8899999999999999999999998753
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.2e-06 Score=82.92 Aligned_cols=149 Identities=10% Similarity=-0.095 Sum_probs=105.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhh
Q 008624 390 AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQ 469 (559)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (559)
.+... .+.+.....+.++.+++.+.++.+.||++-.+.+....++..+..++-... ++.+..++.-++.+.+ .
T Consensus 76 l~~~~-~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-----~s~~~~ialr~llGl~-e 148 (495)
T KOG2533|consen 76 LKLVG-NQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-----HSFPGLIALRFLLGLF-E 148 (495)
T ss_pred cchhh-hhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHH-h
Confidence 33443 678899999999999999999999999995444433333322222222211 3334444444444444 4
Q ss_pred cccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH------HhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008624 470 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK------VFIHFSIKMVSTWFMILLFDWLVQFCRS 543 (559)
Q Consensus 470 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (559)
.+..|....++..-+.+++|+..+|+..+...+|+++++++...+. ...||.+.|++.+++.+...++.++..+
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 4445566688999999999999999999999999999999988764 3468999999998888877776665554
Q ss_pred cc
Q 008624 544 CW 545 (559)
Q Consensus 544 ~~ 545 (559)
..
T Consensus 229 ~~ 230 (495)
T KOG2533|consen 229 DN 230 (495)
T ss_pred CC
Confidence 43
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0039 Score=62.46 Aligned_cols=117 Identities=14% Similarity=0.046 Sum_probs=83.9
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh--c-----------------------
Q 008624 141 SAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--P----------------------- 194 (559)
Q Consensus 141 s~~~~g~~~s~~~l-~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~--~----------------------- 194 (559)
.+..+.++-....+ ...+...+..+++++++|.+++-+.+..+.....++++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45566666665555 455667889999999999998877776666665555542 1
Q ss_pred ------chhhHHHHHHHHhHHHHhhhh-hHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcC
Q 008624 195 ------GLGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257 (559)
Q Consensus 195 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~ 257 (559)
+.|.+.+..++.-+-.....+ .-..+.+|.++.+|-.|..+++..+.++|.+++..+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444444444444444 457888999999999999999999999999999998888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.4e-08 Score=101.18 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH--h---hc-----chhhHHHHHHHHhHHHHhhhhhHhHHHh
Q 008624 153 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA--Y---AP-----GLGVLLVGRLLYGLGIGLAMHGAPLYIA 222 (559)
Q Consensus 153 ~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~--~---~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 222 (559)
.+...++.++...+.||+|||+.++.+.++.+++.+..+ . .+ ++..+............+..+....+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ 375 (451)
T PF00083_consen 296 GLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTA 375 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccc
Confidence 344556667777999999999999999998888877664 1 11 1222222222211112234566678889
Q ss_pred hcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHH-HHhccCCch
Q 008624 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPSP 287 (559)
Q Consensus 223 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p 287 (559)
|.+|.+.|+++.++......++.++++.+...+.+.. +-...|++.++++++..+ ..+++||+.
T Consensus 376 ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 376 ELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL-GGWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccchhhHHHHHHHHhheeEEEeeCC
Confidence 9999999999999999988899999888887777665 313445555555444444 457789975
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0002 Score=70.41 Aligned_cols=127 Identities=13% Similarity=0.001 Sum_probs=87.8
Q ss_pred HHHHHH--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-chhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 008624 384 GPILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSA 460 (559)
Q Consensus 384 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (559)
-.|+++ .+.+. +..|++.+...++.+++.++.|++..|.++ |+.++.+.+++.++.++........++..++.++.
T Consensus 58 wpYl~~lD~~A~~-~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~ 136 (488)
T KOG2325|consen 58 WPYLQKLDPTATA-TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVA 136 (488)
T ss_pred chhhhhcCCCCCc-chhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 345665 44444 789999999999999999999999999886 77888899999999988855544333233333333
Q ss_pred HHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHH
Q 008624 461 LLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 513 (559)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~ 513 (559)
=++. +.+.+.....-.|+++..-.++|.++++..+....+|.++||.+...
T Consensus 137 R~l~--Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 137 RILT--GVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred HHHc--CcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 3333 33333334555777776666888888888887667777777765433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.5e-05 Score=55.32 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=49.4
Q ss_pred hccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 008624 117 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 183 (559)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~ 183 (559)
.+.+.|.++...++ .|++..++|.+.++..+...++++++|.++||+|+++.++....++
T Consensus 16 ~g~~~Pfl~~~~~~-------~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 16 LGCLYPFLPLYLKQ-------LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHhhhhHhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34445555555555 7999999999999999999999999999999999988887765543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0012 Score=64.23 Aligned_cols=141 Identities=17% Similarity=0.068 Sum_probs=77.4
Q ss_pred HHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhchhHHHHH-HHH
Q 008624 108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD-----FLGRKRELII-AAV 181 (559)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d-----r~Grr~~~~~-~~~ 181 (559)
+..++.|.-.+.....+|-+.++.. -++|.+|.|.+.-+ ..-+. .-++|.++.| |+||||..++ .-.
T Consensus 7 ~LY~lQGiP~GL~~gsiPflL~~~~-----~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~ 79 (544)
T PF13000_consen 7 LLYFLQGIPLGLAFGSIPFLLQSMA-----KKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQY 79 (544)
T ss_pred HHHHHcCcccccccccchhhhcccc-----CCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHH
Confidence 4456667666665556666655411 25577777654322 11111 2345666666 8999987654 222
Q ss_pred HHHHHHHHHHhhc-------------------ch-----hhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHH
Q 008624 182 LYALGALTTAYAP-------------------GL-----GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLK 237 (559)
Q Consensus 182 ~~~i~~~~~~~~~-------------------~~-----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~ 237 (559)
+.++..+..+..- .. ..+....++.=+-.+.--.++-.+.-.+..+++++.+..-.
T Consensus 80 l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcq 159 (544)
T PF13000_consen 80 LSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQ 159 (544)
T ss_pred HHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHH
Confidence 2233222222111 01 12223333333444444555566666777889999988888
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 008624 238 ELFIVLGILLGYFVGSFQ 255 (559)
Q Consensus 238 ~~~~~~G~~~g~~~~~~l 255 (559)
..+.++|..++..+--.+
T Consensus 160 tvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 160 TVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred HhHhhhhHHHHHHHHHhh
Confidence 888888888877664443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00051 Score=71.62 Aligned_cols=151 Identities=17% Similarity=0.077 Sum_probs=95.6
Q ss_pred HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHHHHHHHHHHHHHHhhcC---chhHHHHHHHH
Q 008624 387 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILG---GFPLVAVSALL 462 (559)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 462 (559)
.+..+.+. ..+..+........-+..+++|+++|+ +|+++.+.++.++..++..++.+...... ......+..+.
T Consensus 15 ~~~lg~~~-~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa 93 (654)
T TIGR00926 15 LNFLGFSE-STSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA 93 (654)
T ss_pred HHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence 34467766 455555555556666777888999996 68999999998888888877765321100 01112233333
Q ss_pred HHHHHhhcccccccceeecccCCcc---hhhhHHHHHHHHHHHHHHHHHHhhHHhHHhh-------hhhHHHHHHHHHHH
Q 008624 463 LYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFGSNAIVTFAFSPLKVFI-------HFSIKMVSTWFMIL 532 (559)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~-------g~~~~~~~~~~~~~ 532 (559)
+..++.+ +.-|...+...|.++++ .+...+.+.....++|+.+++.+.+.+.+.. +|...+.+.+++.+
T Consensus 94 Lia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ 172 (654)
T TIGR00926 94 LIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI 172 (654)
T ss_pred HHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence 3333333 33344446777777643 4677888888899999999999999887554 46666666655555
Q ss_pred HHHHHHH
Q 008624 533 LFDWLVQ 539 (559)
Q Consensus 533 ~~~~~~~ 539 (559)
++.++..
T Consensus 173 ia~lvf~ 179 (654)
T TIGR00926 173 LALIVFM 179 (654)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.028 Score=55.03 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=89.1
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh---------cc---------------
Q 008624 141 SAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA---------PG--------------- 195 (559)
Q Consensus 141 s~~~~g~~~s~~~l-~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~---------~~--------------- 195 (559)
.+..+.++-+...+ +..+..++.+++.+++.|.+++-..+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 46677888888877 778899999999999999999888777777777777652 01
Q ss_pred --------hhhHHHHHHHHhHHHHhhhh-hHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCC
Q 008624 196 --------LGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA 258 (559)
Q Consensus 196 --------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~ 258 (559)
.|...+..++.=+-...... .-.....|.+..+|-.|..++++.+.+++..++..+..++..+
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 13344444444444444444 4567789999999999999999999999999999988887663
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0066 Score=58.20 Aligned_cols=89 Identities=17% Similarity=0.031 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHH---hhhhcCCC-cchHHHHHhhh
Q 008624 195 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV---GSFQINAV-GGWRYMYGLSA 270 (559)
Q Consensus 195 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~---~~~l~~~~-~~wr~~f~~~~ 270 (559)
.++..++.-++.|++.|..........++ +|++.-...++ +.+++.++..++ .....+.. .+=-.-|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~----G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMS----GQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHh----cchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 35666777788888888777777776555 45554333333 333333333322 22222222 12223344555
Q ss_pred HHHHHHHHHHhccCCchH
Q 008624 271 PLALLMGIGMWSLPPSPR 288 (559)
Q Consensus 271 ~~~~~~~~~~~~~~e~p~ 288 (559)
++.++++++...+|..|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 555555555566666653
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=52.38 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=56.1
Q ss_pred HHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHH
Q 008624 368 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 435 (559)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 435 (559)
.++..+++...+..|.+.++++.|++. .+.|.+..+..+..+++.++.|+++||.++++.......+
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~-~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSP-SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 344455555668889999999999998 8999999999999999999999999999999887655443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00095 Score=64.38 Aligned_cols=111 Identities=18% Similarity=0.139 Sum_probs=83.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH-----HHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhh
Q 008624 141 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV-----LYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 215 (559)
Q Consensus 141 s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~-----~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 215 (559)
..++..+...+|.+|-.++.--.. +. |+ |++.+.+.+ +..+...+.-+.++.|.+++.-+..|+..|..++
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~-~~-ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLP-FF-RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhccee-ee-eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 467888888888887766643221 11 33 333333222 2222333344568899999999999999999999
Q ss_pred hHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhh
Q 008624 216 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255 (559)
Q Consensus 216 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 255 (559)
.....+.|-.++++|..++|....+-++|..++.+++-.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988664
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00098 Score=63.98 Aligned_cols=121 Identities=14% Similarity=0.057 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcC-chhH--HHHHHHHHHHHHhhccc
Q 008624 396 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG-GFPL--VAVSALLLYVGCYQISF 472 (559)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~ 472 (559)
..+.+...++.+..++..+.+-|+.||+|-|..+.++..+.+++..+=.+.....- +..+ .....-.+.........
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim 158 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL 158 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence 67888999999999999999999999999999999999988888776555432111 1112 11112222222211111
Q ss_pred ccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh
Q 008624 473 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF 517 (559)
Q Consensus 473 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 517 (559)
.+..-...--+|+++|+++..+..+.+.+|.+++..+-+.+..+
T Consensus 159 -~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 159 -GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred -ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 12212334457899999999999999999988887776666544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0068 Score=61.78 Aligned_cols=135 Identities=22% Similarity=0.141 Sum_probs=82.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHH-HHHHHH----Hhhcch-hhHHHHHHHHhHHH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII-AAVLYA-LGALTT----AYAPGL-GVLLVGRLLYGLGI 210 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~-~~~~~~-i~~~~~----~~~~~~-~~l~~~r~l~G~~~ 210 (559)
+|.+..+.+.+.+++++|.++|+.+++++.++.-++...+- ++.+.+ ++..+. ++...+ ..++..-++.|+..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999988754333332211 111111 111111 111111 12234445678888
Q ss_pred HhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcC-CCcchHHHHHhhhHHHH
Q 008624 211 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-AVGGWRYMYGLSAPLAL 274 (559)
Q Consensus 211 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~-~~~~wr~~f~~~~~~~~ 274 (559)
|...|....+..+.. .++-+...|-......+|.++|.++.+++.- ..+..+..++ .+.+.+
T Consensus 125 G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~-~a~l~~ 187 (521)
T PRK03612 125 GMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAAL-TGSLNL 187 (521)
T ss_pred HHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHH
Confidence 888888777766543 2234677888888999999999999877654 3423344443 333333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.005 Score=51.14 Aligned_cols=105 Identities=13% Similarity=-0.030 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhccccccccee
Q 008624 400 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLM 479 (559)
Q Consensus 400 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (559)
.-..+......+..++.+.+.+++|.|+.++++.++..+-...... .+.+..+....+.+.+.+..+.+. -.+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~~~l~~~s~l~G~~~a~lW~aq-g~y 113 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNSYTLYPASALLGFGAALLWTAQ-GTY 113 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhHHhhHhh-hHH
Confidence 3445555666777788899999999999999888877765544432 334555555555655555555443 367
Q ss_pred ecccCCcchhhhHHHHHHHHHHHHHHHHHHhh
Q 008624 480 VSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 511 (559)
Q Consensus 480 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 511 (559)
+.+...++.+++-.++.-.+...+.++|..+.
T Consensus 114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999998888887776666654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.012 Score=58.93 Aligned_cols=150 Identities=20% Similarity=0.237 Sum_probs=113.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh----------hcchhhHHHHHHHHh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----------APGLGVLLVGRLLYG 207 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~----------~~~~~~l~~~r~l~G 207 (559)
.|.++...|.+..+..++..++..+..+.--+..-|+++..+.++.++..+.-.. .++.+-.+.--++..
T Consensus 250 p~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~ 329 (433)
T PF03092_consen 250 PHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEE 329 (433)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHH
Confidence 3489999999998899999999999988888888899988888877766654221 123344444557777
Q ss_pred HHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCc-------chHHHHHhhhHHHHHHHHHH
Q 008624 208 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GWRYMYGLSAPLALLMGIGM 280 (559)
Q Consensus 208 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-------~wr~~f~~~~~~~~~~~~~~ 280 (559)
+..+..+.....+++|..|+...|...+++....++|..++..++..+.+..+ +-.+..++..+..++.+.+.
T Consensus 330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll 409 (433)
T PF03092_consen 330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL 409 (433)
T ss_pred HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 77788888888999999999999999999999999999999999988765431 22344555555665555566
Q ss_pred hccCCch
Q 008624 281 WSLPPSP 287 (559)
Q Consensus 281 ~~~~e~p 287 (559)
.++|+..
T Consensus 410 ~lLp~~~ 416 (433)
T PF03092_consen 410 FLLPPQK 416 (433)
T ss_pred HHcCCCc
Confidence 6777754
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0045 Score=55.17 Aligned_cols=56 Identities=9% Similarity=0.126 Sum_probs=37.6
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHhhhh---cC-CCcchHHHHHhhhHHHHHHHHHHhcc
Q 008624 228 QIRGTLISLKELFIVLGILLGYFVGSFQ---IN-AVGGWRYMYGLSAPLALLMGIGMWSL 283 (559)
Q Consensus 228 ~~r~~~~~~~~~~~~~G~~~g~~~~~~l---~~-~~~~wr~~f~~~~~~~~~~~~~~~~~ 283 (559)
|+|+....+...+.++|.++.-+.--.- .+ ....|++.+.+.+++.++.+++..++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777888888887765442111 00 11279999999998888777766544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.013 Score=60.63 Aligned_cols=155 Identities=12% Similarity=-0.032 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHH
Q 008624 360 AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 439 (559)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 439 (559)
.+++...+..+.+......+..-+..+-+++++++ ...|++...+-++.++...+..+...|..|-+++-++.++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~S-s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISS-SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC-CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 34444444444444433334444445555677777 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----------------C---------------------------c---hhHHHHHHHHHHHHHhhcccc
Q 008624 440 LLLLSAYYKIL----------------G---------------------------G---FPLVAVSALLLYVGCYQISFG 473 (559)
Q Consensus 440 ~~~~~~~~~~~----------------~---------------------------~---~~~~~~~~~~~~~~~~~~~~~ 473 (559)
.+++.+-.... . . ..+.++++.-++.|.......
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 98887541110 0 0 023333333344444444455
Q ss_pred cccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH
Q 008624 474 PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515 (559)
Q Consensus 474 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 515 (559)
++..+|+.|...+++.....|+..++..+|-++|-++.+.+.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l 297 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCL 297 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 677789999999999999999999999888888877777664
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.023 Score=55.99 Aligned_cols=118 Identities=18% Similarity=0.125 Sum_probs=89.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh---hc-------chhhHHHHHHHHh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY---AP-------GLGVLLVGRLLYG 207 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~---~~-------~~~~l~~~r~l~G 207 (559)
-|+++..+|..-+...+....+.+...++.+|+|..+.=++++....++..++.. .+ +...++.+-++.=
T Consensus 288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR 367 (432)
T PF06963_consen 288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR 367 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999888777776655444433322 22 2223333334444
Q ss_pred HHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhh
Q 008624 208 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255 (559)
Q Consensus 208 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 255 (559)
+|.=..-....-++.|..|+++||...|......++--++...++-.+
T Consensus 368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444445667778899999999999999999999999888888776654
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.12 Score=51.71 Aligned_cols=120 Identities=10% Similarity=0.006 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCch---------------------
Q 008624 396 ADATRVSVVIGVFKLVM-TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF--------------------- 453 (559)
Q Consensus 396 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 453 (559)
+...++-....+...+. .++.+++++|++|+++...........+++++.......+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 34555555444444444 77889999999999987776665555555555442211110
Q ss_pred ----hHHHHHHHHHHHHHhhccccc-ccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH
Q 008624 454 ----PLVAVSALLLYVGCYQISFGP-ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515 (559)
Q Consensus 454 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 515 (559)
..+...+..+..-.++....+ +.+.+++|.+..++..+-.++....+++|..+++.+...+.
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122222233333333333 67889999999999999999999999999999998887776
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.00058 Score=69.77 Aligned_cols=148 Identities=14% Similarity=-0.018 Sum_probs=1.0
Q ss_pred HHHHHHhhCcchhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHH
Q 008624 367 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 446 (559)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (559)
+..+.+......+..-++.+-+++++++ .+.|++.+.+-++.++..++..++.+|..|-+++-.+.++++++.+++.+-
T Consensus 10 ~~~~~q~~~~g~~~~~lttiErRF~l~S-~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 10 LLGLFQMMVSGYVNSSLTTIERRFGLSS-SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence 3333444333334444556666788887 899999999999999999999999999888888889999999998887642
Q ss_pred HhhcC-----------------------------------------chh---HHHHHHHHHHHHHhhcccccccceeecc
Q 008624 447 YKILG-----------------------------------------GFP---LVAVSALLLYVGCYQISFGPISWLMVSE 482 (559)
Q Consensus 447 ~~~~~-----------------------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (559)
....+ ... +..+++.-++.+..+....++..+|+.|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 11100 001 1111222222333333344567789999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH
Q 008624 483 IFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 515 (559)
Q Consensus 483 ~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~ 515 (559)
.++++..+...|+..+...+|-++|-.+.+...
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ---------------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 999999999999999988888877766666554
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.23 Score=49.16 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHh---hhchhHHHHHHHHHHHHHHHHHHhhc------------------chhhHHHHHHHHhHHHHh
Q 008624 154 YGALLGSILVYSIAD---FLGRKRELIIAAVLYALGALTTAYAP------------------GLGVLLVGRLLYGLGIGL 212 (559)
Q Consensus 154 l~~~i~~~~~G~l~d---r~Grr~~~~~~~~~~~i~~~~~~~~~------------------~~~~l~~~r~l~G~~~g~ 212 (559)
++..++..+.+.+++ ++||++.+.++..+..++.++.-+.. ++...++.-++.|++-+.
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~ 369 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC 369 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence 444555555666665 57899999999988888888775521 355677778999999999
Q ss_pred hhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 008624 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 254 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 254 (559)
.....+.++.+.. +++|..+.++...-..++..++......
T Consensus 370 ~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 370 FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999 6778999999888888887776665544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.18 Score=47.54 Aligned_cols=135 Identities=21% Similarity=0.089 Sum_probs=82.3
Q ss_pred hhhchHHHHHHcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHH
Q 008624 379 VLYYAGPILQSAGFSAA-ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 457 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (559)
.....+.+..+.+.... ...++......+...++.++.|.+.||.|||+.+..+.....++.+...... ....+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 97 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP---NVGLALL 97 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc---cchHHHH
Confidence 33344555555554431 2577888888888888889999999999999777666654333333333211 0112222
Q ss_pred HHHHHHHHHHhhcccccccceeecccCCc-chhhhHHHHHHH-HHHHHHHHHHHhhHHhHHh
Q 008624 458 VSALLLYVGCYQISFGPISWLMVSEIFPL-RTRGRGISLAVL-TNFGSNAIVTFAFSPLKVF 517 (559)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~i~~~~~g~~~~~ 517 (559)
+..... .+.......+....+..|..|. +.++...+.... ...++..+++.+.+.+...
T Consensus 98 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 98 LILRLL-QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHH-HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2222223445666788888886 578888888887 5777777887666666554
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0016 Score=58.96 Aligned_cols=134 Identities=16% Similarity=0.073 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHh
Q 008624 145 LGLVVSGSLYGALLGSILVYSIADFL--GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 222 (559)
Q Consensus 145 ~g~~~s~~~l~~~i~~~~~G~l~dr~--Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 222 (559)
.|.+.-+-.+-..+..+.+....||+ |.|. .+..++.+.+.++.+++++.++-+++-.+..++.|.-...-.++-+
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri--~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss 141 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRI--ALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS 141 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHH--HHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc
Confidence 34444455555666666677788876 5553 4455777888889999999999999999998888876665555433
Q ss_pred hcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCC-CcchHHHHHhhhHHHHHHHHHHhccCC
Q 008624 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA-VGGWRYMYGLSAPLALLMGIGMWSLPP 285 (559)
Q Consensus 223 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~~wr~~f~~~~~~~~~~~~~~~~~~e 285 (559)
. +++ ...+-+..+.+.+.++|..--..+.+. ..+-|...++...+-++.++..+++.+
T Consensus 142 ~-Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~ 200 (409)
T KOG3880|consen 142 R-YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLK 200 (409)
T ss_pred c-CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeC
Confidence 3 322 234444445555555555544444441 125677777766666555555554433
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.00094 Score=63.45 Aligned_cols=109 Identities=9% Similarity=-0.145 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHHHHHHHHHHHHHHhhc--------CchhHHHHHHHHHHHHHhhc
Q 008624 400 RVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKIL--------GGFPLVAVSALLLYVGCYQI 470 (559)
Q Consensus 400 ~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 470 (559)
.....+.++..+|+.+.++..-+. .+|++. +..+.=.+..-++......+ -.+.++.++..++++ ...+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g-~TNG 263 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFG-FTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHH-Hccc
Confidence 355678899999999887643221 233333 22222221111111110000 012233333333333 3333
Q ss_pred ccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHh
Q 008624 471 SFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 510 (559)
Q Consensus 471 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 510 (559)
-.......+..+..++++|..+..+....-.+|-.+|..+
T Consensus 264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ---HHHH---------------------------------
T ss_pred hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777788887888777777666666665555543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.31 Score=47.51 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=82.1
Q ss_pred hhhchHHHHHH--cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHH
Q 008624 379 VLYYAGPILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456 (559)
Q Consensus 379 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (559)
.-.|+..|+.+ .+++..+...-+.-...-..+...+....+.|.++.|++++.+.+...+...++.+. .....
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-----~sv~~ 96 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-----TSVLA 96 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----CcHHH
Confidence 33444455543 566663333344444444555666677889999999999999888877777766552 23333
Q ss_pred HHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh
Q 008624 457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF 517 (559)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~ 517 (559)
..+.-++.+..... -...++++-...|+++-.++.+...+..-+|.+++..++-.+...
T Consensus 97 mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 97 MQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333222 223335555566888888899999988888888888776666553
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.044 Score=39.83 Aligned_cols=67 Identities=18% Similarity=0.037 Sum_probs=58.3
Q ss_pred hhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHH
Q 008624 379 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 446 (559)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (559)
+...+|...++.+++. .+++++.+.+.++.++|.+...++.++.++++.+..+.+...+..+.+++.
T Consensus 11 yTplLP~M~~~~~ls~-~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSL-SQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHhHhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888887 899999999999999999999999998888888888888888888888764
|
Note that many members are hypothetical proteins. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1 Score=41.96 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcC
Q 008624 154 YGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC 225 (559)
Q Consensus 154 l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 225 (559)
+..+..+++.+.+..++|.|+++.++.......- ..=+-+.+..++-.-.+.|++.+..+..--+|+++.-
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 4455566666689999999999998887765542 2223467888999999999999999888777776654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.29 Score=50.08 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHhHH-hhhhhHHHHHHHHH
Q 008624 488 TRGRGISLAVLTNFGSNAIVTFAFSPLKV-FIHFSIKMVSTWFM 530 (559)
Q Consensus 488 ~~~~~~g~~~~~~~~g~~i~~~~~g~~~~-~~g~~~~~~~~~~~ 530 (559)
..+...|-......+|+++|+++.+.+.- .+|........+.+
T Consensus 142 ~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l 185 (521)
T PRK03612 142 HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL 185 (521)
T ss_pred chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 35677888888999999999999888765 67765554444333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.58 Score=46.73 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHH--HHHHHHHHHHHHHh---------hcchhhHHHHHHHHhHHHH
Q 008624 145 LGLVVSGSLYGALLGSILVYSIADFLGRK--RELII--AAVLYALGALTTAY---------APGLGVLLVGRLLYGLGIG 211 (559)
Q Consensus 145 ~g~~~s~~~l~~~i~~~~~G~l~dr~Grr--~~~~~--~~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~g 211 (559)
.-.....|.++-.+|..+..+. ..-++| ++++. .=+++.-..++|.. -++-+..++..++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 3455566666666666644322 111222 33322 22334444445533 2466677888999999999
Q ss_pred hhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 008624 212 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 254 (559)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 254 (559)
-....+..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.095 Score=51.50 Aligned_cols=114 Identities=9% Similarity=-0.157 Sum_probs=73.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhcCc----hhHHHHHHHHHHHHHhhcccccccceeecccCCcc---hhhhHHHHHHHH
Q 008624 427 PLLIGGVCGIALSLLLLSAYYKILGG----FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLT 499 (559)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~ 499 (559)
+.+.++.++..++.+++.+....... .....++.+.++..+. ++.=|....+..|.++++ .+.+........
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~-G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGT-GGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHH-HCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhcc-ccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 45667778888888776554432111 1123333333333333 334455557777777654 466777788899
Q ss_pred HHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 008624 500 NFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFC 541 (559)
Q Consensus 500 ~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (559)
.++|+.++..+.+++.++.||...|.+..++.+++.+..+.-
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999988887777665554443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.073 Score=47.64 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=36.8
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHH
Q 008624 386 ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 440 (559)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 440 (559)
+.+.+|+.. .+.+.+........++...+.|-+.||.|||+.-+.-.+...+++
T Consensus 63 LYstYgFgk-G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC 116 (454)
T KOG4332|consen 63 LYSTYGFGK-GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC 116 (454)
T ss_pred eehhcCccC-CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence 456677766 566666666666677778888999999999987544433333333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.12 Score=50.24 Aligned_cols=131 Identities=16% Similarity=0.002 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcC
Q 008624 146 GLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC 225 (559)
Q Consensus 146 g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 225 (559)
.|-..++.+...+.+....++.+|+|-|+.+..+...+.++..+.++..+.+.....|-..|+-.+....+-...++++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 56667788888999999999999999777777777778888888888888888888888887555554444444443321
Q ss_pred C-----------------------CCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHH
Q 008624 226 P-----------------------SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 276 (559)
Q Consensus 226 ~-----------------------~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~ 276 (559)
- ...+|...|+.+....+-.++..+..|.+.+..++=+.+-++.++.+++.
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~ 488 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLI 488 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHH
Confidence 1 12346677788888888887777777777766655566655555554443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.13 E-value=3.8 Score=42.52 Aligned_cols=155 Identities=13% Similarity=0.072 Sum_probs=89.4
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHHHHHHHHHHHHHHhhcC----------c
Q 008624 384 GPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILG----------G 452 (559)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 452 (559)
.++...++... ..+.-.............+++++++|. +||-+.+.++.++..++..++........ .
T Consensus 62 ~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~ 140 (571)
T KOG1237|consen 62 TYLTLELHASG-GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPG 140 (571)
T ss_pred HHHHHHhccch-HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCC
Confidence 33344555555 444444445555556667888999996 47778888887777777665554332210 0
Q ss_pred -------hhH--HHHHHHHHHHHHhhcccccccceeecccCC----cchhh--hHHHHHHHHHHHHHHHHHHhhHHhHHh
Q 008624 453 -------FPL--VAVSALLLYVGCYQISFGPISWLMVSEIFP----LRTRG--RGISLAVLTNFGSNAIVTFAFSPLKVF 517 (559)
Q Consensus 453 -------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~--~~~g~~~~~~~~g~~i~~~~~g~~~~~ 517 (559)
... ..+............+.-|....+-.|-++ .+.+. .-+.......++|..++-.+..++.++
T Consensus 141 ~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~ 220 (571)
T KOG1237|consen 141 GNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN 220 (571)
T ss_pred CCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 011 111111111222233344455566666666 22223 556666677888888888888888889
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 008624 518 IHFSIKMVSTWFMILLFDWLVQ 539 (559)
Q Consensus 518 ~g~~~~~~~~~~~~~~~~~~~~ 539 (559)
.||...+.+...+..++.++.+
T Consensus 221 ~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 221 VGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred ccceeeccHHHHHHHHHHHHHH
Confidence 9988877776665555544443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.8 Score=43.72 Aligned_cols=108 Identities=11% Similarity=-0.025 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhc-----Cc---------------------hhHHHHHHH
Q 008624 408 FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL-----GG---------------------FPLVAVSAL 461 (559)
Q Consensus 408 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------------~~~~~~~~~ 461 (559)
++++...+-.++++++++.++..+..........++++..... .+ ..|... +.
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~s-lf 149 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFS-LF 149 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHH-HH
Confidence 3455566678899999998877665555555555554432110 00 011111 11
Q ss_pred HHHHHHhhc-ccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH
Q 008624 462 LLYVGCYQI-SFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV 516 (559)
Q Consensus 462 ~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 516 (559)
.+..-.++. ..+-+.|.+++|....++..+-.++.....++|.++++.+...+.+
T Consensus 150 Yv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 150 YVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222 2222457889999999999999999999999999999988877776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.4 Score=44.09 Aligned_cols=113 Identities=18% Similarity=0.108 Sum_probs=82.8
Q ss_pred ccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhch-h-----HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHH
Q 008624 138 FNLS-AVQLGLVVSGSLYGALLGSILVYSIADFLGR-K-----RELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI 210 (559)
Q Consensus 138 ~~~s-~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr-r-----~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 210 (559)
+..+ .+|.-|....|.+|..+..- +-++=+ + .++..-.+++.+...+..+.+++|...+.-+.-|+-+
T Consensus 282 ~sls~~sqYRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlG 356 (409)
T KOG3880|consen 282 FSLSKDSQYRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLG 356 (409)
T ss_pred CccchhhcchhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcC
Confidence 4444 34688999888877654321 111111 1 2233345556666677778999999999999999988
Q ss_pred HhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhh
Q 008624 211 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255 (559)
Q Consensus 211 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 255 (559)
|..++...--+.+-.++++|-.+++....+-++|..++.+++-.+
T Consensus 357 GasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 357 GASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred chHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 988888888888888899999999999999999999888887554
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=89.54 E-value=4.4 Score=36.68 Aligned_cols=103 Identities=13% Similarity=0.056 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHH----HHHHHHHHHHHHHHh-h----cchhhHHHHHHHHhHHHHhhh
Q 008624 145 LGLVVSGSLYGALLGSILVYSIADF-LGRKRELI----IAAVLYALGALTTAY-A----PGLGVLLVGRLLYGLGIGLAM 214 (559)
Q Consensus 145 ~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~~~----~~~~~~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~ 214 (559)
.....-++..|+.+|....|++... +-||+.+. .+.+++.+..+.... . .++..+++.-|+.|++.=+..
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566677777888888888874 45665443 345555555444212 2 135677888888887754455
Q ss_pred hhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHH
Q 008624 215 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLG 248 (559)
Q Consensus 215 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 248 (559)
++...+=.|+ +..++.+.--.++..+++|.++-
T Consensus 223 ~ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~y 255 (267)
T PF07672_consen 223 GVILNLPHEY-KGYNPKKIGIQFGLIWGFGYIFY 255 (267)
T ss_pred HHHhcChhhh-cCCCcceehhHHHHHHHHHHHHH
Confidence 5544433333 22223333333445566665543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.13 Score=48.87 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHH--HHHHHHHHHHHHH----------hhcchhhHHHHHHHHhHHHHhh
Q 008624 147 LVVSGSLYGALLGSILVYSIADF-LGRKRELII--AAVLYALGALTTA----------YAPGLGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 147 ~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~~~~--~~~~~~i~~~~~~----------~~~~~~~l~~~r~l~G~~~g~~ 213 (559)
.+...|.++-.+|..+.++.-=+ -.+|++++. .=+++.-..++|. +.+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34566777888888776653211 134444433 2222222223331 2345677888899999999999
Q ss_pred hhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 008624 214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 254 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~ 254 (559)
......+..+..++++|..+-.+......+|..+|..++-.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888877644
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.71 E-value=7 Score=38.08 Aligned_cols=112 Identities=20% Similarity=0.098 Sum_probs=75.0
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH-H------HhhcchhhHHHHHHHHhHHHHhh
Q 008624 142 AVQLGLVVSG-SLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT-T------AYAPGLGVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 142 ~~~~g~~~s~-~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~-~------~~~~~~~~l~~~r~l~G~~~g~~ 213 (559)
.-..-++..+ |.+.-.+|.+.+.++-+.=.|+......+=+..+-.+. | .+-.+-+++++.-.+.|+..|-.
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYl 360 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYL 360 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchH
Confidence 3334455555 77777888666665555443332222222222222222 2 22456778889999999999999
Q ss_pred hhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 008624 214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 253 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~ 253 (559)
......+..+-.+++++-.+-.+.......|...|..++.
T Consensus 361 tsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 361 TSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred hhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999888888888888888888777643
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.63 E-value=7.8 Score=36.63 Aligned_cols=86 Identities=21% Similarity=0.203 Sum_probs=58.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH----HHH-Hh----hcchhhHHHHHHHHhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA----LTT-AY----APGLGVLLVGRLLYGL 208 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~----~~~-~~----~~~~~~l~~~r~l~G~ 208 (559)
+|-+--|.+.+.+.|.+...+|+...-++.|---.-+.+..-+++..++. ++. .| .++-+.++++-++.|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 35566788899999999999999988887774333222222222222221 111 23 2456788888999999
Q ss_pred HHHhhhhhHhHHHhh
Q 008624 209 GIGLAMHGAPLYIAE 223 (559)
Q Consensus 209 ~~g~~~~~~~~~i~~ 223 (559)
-.|.-.|..+.++..
T Consensus 118 LVG~EiPL~mrml~~ 132 (508)
T COG4262 118 LVGAEIPLLMRMLQR 132 (508)
T ss_pred HHhcchHHHHHHHHH
Confidence 999999999998876
|
|
| >PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [] | Back alignment and domain information |
|---|
Probab=88.46 E-value=23 Score=33.68 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=17.7
Q ss_pred chhhHHHHHHHHhHHHHhhhhhHh-HHHhhcCCCC
Q 008624 195 GLGVLLVGRLLYGLGIGLAMHGAP-LYIAETCPSQ 228 (559)
Q Consensus 195 ~~~~l~~~r~l~G~~~g~~~~~~~-~~i~~~~~~~ 228 (559)
+...-.+--.+.+++.|...-++. -++.|....+
T Consensus 259 ~~~~~~~~~~~~a~aaG~~lyv~~~ell~~~~~~~ 293 (317)
T PF02535_consen 259 SSSSDIVSGILLAFAAGTFLYVAFVELLPEEFHNK 293 (317)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444455556677777665543332 3444444433
|
; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.51 E-value=8 Score=37.23 Aligned_cols=76 Identities=18% Similarity=0.086 Sum_probs=36.1
Q ss_pred HHHHHHhhCcchhhhchHHHHHHcCCCCchhHH---HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh-hhHHHHHHHHH
Q 008624 367 LVLFQQITGQPSVLYYAGPILQSAGFSAAADAT---RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG-GVCGIALSLLL 442 (559)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~-~~~~~~~~~~~ 442 (559)
+.+..+...+.... -.|.+++..+.+- ...+ +..-++.+=-+-+.++-....+|+|||+..++ +..+.+..+..
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~vSy-t~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mll 115 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKGVSY-TSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLL 115 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCCcch-hhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHH
Confidence 44444544444444 7788888655543 2222 22222222222222222333449999876543 44444444444
Q ss_pred HH
Q 008624 443 LS 444 (559)
Q Consensus 443 ~~ 444 (559)
+.
T Consensus 116 Ls 117 (510)
T KOG3574|consen 116 LS 117 (510)
T ss_pred Hh
Confidence 43
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=85.61 E-value=11 Score=37.67 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=47.7
Q ss_pred hHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC
Q 008624 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 259 (559)
Q Consensus 198 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~ 259 (559)
.+++..++.-+..-..++...++-+.+.+|.-=|++|.+.+...++|.---..+.-++++..
T Consensus 407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 44445677778888888899999999999999999999999999988655554544444444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.59 E-value=15 Score=35.23 Aligned_cols=121 Identities=17% Similarity=0.047 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH------h------hcchhhHHHHHHHHhHHHHhh--hhhHhH
Q 008624 154 YGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA------Y------APGLGVLLVGRLLYGLGIGLA--MHGAPL 219 (559)
Q Consensus 154 l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~------~------~~~~~~l~~~r~l~G~~~g~~--~~~~~~ 219 (559)
....+..++.|...|+..|+|++...+.+.-++.++++ + +.++..+..+-++.-...+.. .....+
T Consensus 74 gs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~ 153 (503)
T KOG2601|consen 74 GSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGT 153 (503)
T ss_pred hHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 34567778889999999999998887766544443333 2 135666655555443322211 111111
Q ss_pred H--HhhcC----CCCccc---hhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHH
Q 008624 220 Y--IAETC----PSQIRG---TLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 275 (559)
Q Consensus 220 ~--i~~~~----~~~~r~---~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~ 275 (559)
+ -.||. ..+.+. +..+..-..-..-..+.|++.|.+.... +-|..-.+.++-+++
T Consensus 154 i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfv-sl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 154 ILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFV-SLRASAGTFAAWALV 217 (503)
T ss_pred EEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceee-chhhhhhhhHHHHHH
Confidence 1 12332 222233 3335555566677889999999888766 666654444444443
|
|
| >PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=83.78 E-value=11 Score=31.11 Aligned_cols=80 Identities=16% Similarity=0.278 Sum_probs=50.7
Q ss_pred HHhhhchhHHHHHHHH------HHHHHHHHHHh----hcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhh
Q 008624 166 IADFLGRKRELIIAAV------LYALGALTTAY----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS 235 (559)
Q Consensus 166 l~dr~Grr~~~~~~~~------~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 235 (559)
++||.-||..+..|+- .+.+...+..- .+++..++..-++.|+| ...+.+.+++--+++++.|..+|
T Consensus 57 Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~g---llGisYGilSaSWD~~r~GSllG 133 (153)
T PF11947_consen 57 VSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLG---LLGISYGILSASWDPEREGSLLG 133 (153)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHH---HHhhhhhhcccccCCCCCCCccc
Confidence 5677766655544332 22222222211 24555666666666665 44567788888889998999999
Q ss_pred HHHHHHHHHHHHH
Q 008624 236 LKELFIVLGILLG 248 (559)
Q Consensus 236 ~~~~~~~~G~~~g 248 (559)
+-.+-.+++-+.-
T Consensus 134 ~~e~~~N~~r~~~ 146 (153)
T PF11947_consen 134 WEEFKRNWGRMWE 146 (153)
T ss_pred HHHHHHhHHHHHH
Confidence 9988888876543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.00 E-value=60 Score=32.68 Aligned_cols=121 Identities=12% Similarity=-0.048 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcC---------------chh-----
Q 008624 396 ADATRVSVVIGV-FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG---------------GFP----- 454 (559)
Q Consensus 396 ~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~----- 454 (559)
+...++-....+ ++++..++..++.+++.+.++..+........+++++....... ..+
T Consensus 61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~ 140 (509)
T COG3202 61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW 140 (509)
T ss_pred hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence 455555555555 56777778888899998888876665555555555554432100 011
Q ss_pred -------HHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHH
Q 008624 455 -------LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKV 516 (559)
Q Consensus 455 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~ 516 (559)
|.......+.-.-.....+-+.+..+.|....++..+-.++.+...+++..+++.+..++..
T Consensus 141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222211111112222456788899999999999999999999999998888887765
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=80.59 E-value=40 Score=29.76 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=19.3
Q ss_pred hcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcch
Q 008624 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW 262 (559)
Q Consensus 223 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 262 (559)
|+...+++.+.-.......-++.++|.++++.+.+.. +.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~-~~ 191 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRL-GF 191 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 3333343333334444555556666666666655544 43
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.47 E-value=7.8 Score=29.25 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=29.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhh
Q 008624 486 LRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHF 520 (559)
Q Consensus 486 ~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~ 520 (559)
+..++.+.++-...-.+++++....+|++.|++-.
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678888888888899999999999999998743
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.44 E-value=44 Score=30.13 Aligned_cols=33 Identities=6% Similarity=-0.099 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHH
Q 008624 407 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 439 (559)
Q Consensus 407 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 439 (559)
++..++.+.+-+++.|+..|.+.+++.++..+.
T Consensus 251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 251 LCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 333344444456778888888877776655544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 559 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 7e-26 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 6/156 (3%)
Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
N+ + V+ L + + I+D +GR+ +++ ++ L L L
Sbjct: 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89
Query: 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 257
VL+ + G+G G+ A + SL + I++ LL +G ++
Sbjct: 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG-LLD 148
Query: 258 AVGGWRYMYGLSAPLALLMGIGMW-----SLPPSPR 288
+ WR Y L + M + P
Sbjct: 149 TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP 184
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 7/178 (3%)
Query: 108 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIA 167
G+ FGY +L P L S LG +SG ++ S++
Sbjct: 30 FLGIFFGYAAYYLVRKNFALAMPYLV---EQGFSRGDLGFALSGISIAYGFSKFIMGSVS 86
Query: 168 DFLGRKRELIIAAVLYALGALTTAYAPG----LGVLLVGRLLYGLGIGLAMHGAPLYIAE 223
D + L +L A L + P + V+ V L G G+ +
Sbjct: 87 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 146
Query: 224 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 281
+ RG ++S+ +G + + + W + A A+L+ + +
Sbjct: 147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 16/110 (14%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 170 LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQI 229
+G K L++A + ++ + +++A +++ + L+ + + G YI +
Sbjct: 286 IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345
Query: 230 RGTLISLKELFIV-LGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 278
T+ + F L ++ + ++ G++ Y + +AL +
Sbjct: 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTL 394
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 7e-04
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT---TAYAP 194
F L+ Q GL+ S +G + I + L K +I LYALGA A
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115
Query: 195 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 254
+ LVG + G+G A ++ P ++L + F G ++ G
Sbjct: 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175
Query: 255 QI 256
I
Sbjct: 176 LI 177
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 559 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.51 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.41 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.37 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.3 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.3 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.23 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.13 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=357.98 Aligned_cols=439 Identities=31% Similarity=0.527 Sum_probs=337.1
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCC-CccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 93 AFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSG-TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG 171 (559)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 171 (559)
+++.+..+.+.++++++.+++|||.+.++..++.+..+.... +...+.+..+.|++.+++.+|..+|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566677777888999999999999998887765431110 0002445678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------------hhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchh
Q 008624 172 RKRELIIAAVLYALGALTTA------------------YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL 233 (559)
Q Consensus 172 rr~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 233 (559)
||++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+....++.|+.|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999998 478999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcCC-------CcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHH
Q 008624 234 ISLKELFIVLGILLGYFVGSFQINA-------VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKE 306 (559)
Q Consensus 234 ~~~~~~~~~~G~~~g~~~~~~l~~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~ 306 (559)
.++.+.+..+|.++++.++..+... ...||+.+.+..+..++..+..+++||||+|+..| ++.+
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~---------~~~~ 234 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSR---------GKQE 234 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHT---------TCHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHc---------Cchh
Confidence 9999999999999999988766532 12689999999999998888889999999999875 5566
Q ss_pred HHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHH
Q 008624 307 QAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 386 (559)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (559)
++.+.+++.+.++..++ +..+ .+......++.......++ .++..+......+.++.+.+.+.+|.+.+
T Consensus 235 ~a~~~l~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQ----AVQE----IKHSLDHGRKTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhHHHhcCCchhHH----HHHH----HHHHHHhhhhhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 66666665543211100 0000 0000001111111122222 23445555666777778888888899998
Q ss_pred HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 008624 387 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVG 466 (559)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (559)
.+..+.+. ..........++..+++.++++++.||+|||+.+..+...+.++++.++..... ....+..+...+++..
T Consensus 304 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 381 (491)
T 4gc0_A 304 FKTLGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVA 381 (491)
T ss_dssp HHHSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHhcCCCc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHH
Confidence 88888776 567777788889999999999999999999999999888888887777655432 2333444555555666
Q ss_pred HhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh------hhhhHHHHHHHHHHHHHHHHHHH
Q 008624 467 CYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF------IHFSIKMVSTWFMILLFDWLVQF 540 (559)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~~~ 540 (559)
++..+..++.+.+.+|++|++.|+++.|+.++++++++++++.+.+.+.+. .+....+++.+++.++..++.++
T Consensus 382 ~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~ 461 (491)
T 4gc0_A 382 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 461 (491)
T ss_dssp HHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 667777788889999999999999999999999999999999988776543 34455666677777777777778
Q ss_pred hhccccccCCchh
Q 008624 541 CRSCWEQRTFSSS 553 (559)
Q Consensus 541 ~~~~~~~~~~~~~ 553 (559)
+.+|+|+|+.||.
T Consensus 462 ~~PETkg~tLeei 474 (491)
T 4gc0_A 462 FVPETKGKTLEEL 474 (491)
T ss_dssp HCCCCTTCCHHHH
T ss_pred eecCCCCCCHHHH
Confidence 8899999988763
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=321.92 Aligned_cols=397 Identities=14% Similarity=0.042 Sum_probs=295.3
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 008624 100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 179 (559)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~ 179 (559)
+..+...+++.+..+++...+.+.++.+.++ + .+..+.|++.+++.++..++++++|+++||+|||++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 3345556666777888888888888888777 8 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----hcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhh
Q 008624 180 AVLYALGALTTAY----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255 (559)
Q Consensus 180 ~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 255 (559)
.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++||.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCcc-hHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHH
Q 008624 256 INAVGG-WRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL 333 (559)
Q Consensus 256 ~~~~~~-wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (559)
.+.. + ||+.|++.++++++..++. +++||+|+....++.+ +.+...+. +.
T Consensus 179 ~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~--~~-- 230 (451)
T 1pw4_A 179 MAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-----------------------EYKNDYPD--DY-- 230 (451)
T ss_dssp HHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-----------------------TTCCC---------
T ss_pred HHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh-----------------------hhcccccc--cc--
Confidence 7766 7 9999999998887766544 6688876521110000 00000000 00
Q ss_pred HHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHH
Q 008624 334 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVM 412 (559)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 412 (559)
++ +.+.+....+...++.++++.++...+..++..+.. .....+.|.++++ .+.+. ...+.......++.+++
T Consensus 231 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 304 (451)
T 1pw4_A 231 NE-KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPG 304 (451)
T ss_dssp ---------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHH
T ss_pred hh-hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHH
Confidence 00 000000111111356677776666555444444333 3466788888877 67766 78899999999999999
Q ss_pred HHHHHHHhhhc--CCchhhhhhhHHHH-HHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchh
Q 008624 413 TWIAVAKVDDL--GRRPLLIGGVCGIA-LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 489 (559)
Q Consensus 413 ~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 489 (559)
.++.+++.||+ ++|+.+..+..+.. ++++++... ...+.+......++.+.+. ....+....+..|.+|++.|
T Consensus 305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 380 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---PAGNPTVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAA 380 (451)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC---CTTCHHHHHHHHHHHHHHH-THHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh---cccCHHHHHHHHHHHHHHH-hchHHHHHHHHHHHhchhhh
Confidence 99999999999 99988777666555 444433321 1112333333333333333 33344555788999999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008624 490 GRGISLAVLTNFG-SNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCR 542 (559)
Q Consensus 490 ~~~~g~~~~~~~~-g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (559)
+++.|+.+...++ |..++|.+.|.+.+..|+...+...+++.++..++.+...
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999988888777766665555554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=310.51 Aligned_cols=362 Identities=16% Similarity=0.110 Sum_probs=282.9
Q ss_pred HHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 008624 104 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 183 (559)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~ 183 (559)
.++++..+..+++.....+.+|.+.++ +|++..+.|++.+++.+++.++.+++|+++||+|||++++++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 344555677777777888888887766 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhc-CCC
Q 008624 184 ALGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-NAV 259 (559)
Q Consensus 184 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~ 259 (559)
+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 889999999999999999999999999999999999999999999999999999999999999988 554
Q ss_pred cc------------------------hHHHHHhhhHHHHHHHHHHhc--cCCchHHHHHHhhcCCCchhhHHHHHHHHHH
Q 008624 260 GG------------------------WRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALG 313 (559)
Q Consensus 260 ~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (559)
+. ||+.|++.+++.++..++.++ .||+++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------------------ 237 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD------------------------ 237 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT------------------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc------------------------
Confidence 23 999998888777666555443 3443320
Q ss_pred hhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHH-HHHc-C
Q 008624 314 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSA-G 391 (559)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 391 (559)
.++ +.++.+.+.+++++++++.++...+..++..... .....+.|.+ +++. +
T Consensus 238 ---~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g 291 (438)
T 3o7q_A 238 ---NHS-------------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPG 291 (438)
T ss_dssp ---CCC-------------------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTT
T ss_pred ---ccc-------------------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCC
Confidence 000 0011122234667888888777766555544433 3366778888 7776 7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcc
Q 008624 392 FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQIS 471 (559)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (559)
.+. ..++.......++.+++.++.+++.||++||+.+..+.++.+++++++... ...+ .+...++.+.+.+ .
T Consensus 292 ~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~g~~~~-~ 363 (438)
T 3o7q_A 292 MTA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGHV-GLIALTLCSAFMS-I 363 (438)
T ss_dssp CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----CHHH-HHHHHHHHHHHHT-T
T ss_pred cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-----CCcH-HHHHHHHHHHHHH-H
Confidence 766 788999999999999999999999999999999988888777776665542 2222 2333334443433 3
Q ss_pred cccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh-hhHHHHHHHHHHH
Q 008624 472 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH-FSIKMVSTWFMIL 532 (559)
Q Consensus 472 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~ 532 (559)
..+..+.+..|.+|++ ++.+.++.. ...+|+.++|.+.|.+.+..| +...+.+.+++.+
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4456667878888865 888888877 677999999999999999999 7777665544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=280.54 Aligned_cols=397 Identities=12% Similarity=0.034 Sum_probs=251.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
+|++..+.+++.+++.++..++++++|+++|| +|||++++.+.++.+++.++++++++++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhcCCCCc--cchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc-CCchHHHHHH
Q 008624 217 APLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPRWLLLR 293 (559)
Q Consensus 217 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~ 293 (559)
..+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..++.++. ++.. ..+
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~ 204 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTL---DPH 204 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCcccc---ccc
Confidence 9999999999988 777888899999999999999999998877 99999999887776665554432 1110 000
Q ss_pred hhcCCCchhhHHHHHHHHHHh----------------hccCCCCCcccHHHHHHHH-HHhh-hcccccccccchhhhccC
Q 008624 294 AVQGKGSLQEYKEQAISALGK----------------LRRRPPGDKLSERQIEDTL-VSLK-SSYTDEKSEGSFLEVFQG 355 (559)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 355 (559)
. .+.+.+.+.++.++..+. ..+..+.++.......... .... .....+.......+..+.
T Consensus 205 ~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 205 Y--LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp C--SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred c--cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 0 001111111121221111 1111111111000000000 0000 000000000001111111
Q ss_pred CchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh----
Q 008624 356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI---- 430 (559)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~---- 430 (559)
.......+...+..... .....+.+.+.++ .+.+. ...+.......++.+++.++.+++.||++||+...
T Consensus 283 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSW-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp TTHHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSS-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCc-cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 11222222222222222 3345556666665 34443 56777778888889999999999999999986654
Q ss_pred -hhhHHHHHHHHHHHHHHhhc----CchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHH
Q 008624 431 -GGVCGIALSLLLLSAYYKIL----GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNA 505 (559)
Q Consensus 431 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 505 (559)
.+.++.+++++++....... ....+......++.+.+. ....+....+..|.+|++.|+++.|+.+...++|.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665555432111 112333333333333333 344456668999999999999999999999999999
Q ss_pred HHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 008624 506 IVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQ 547 (559)
Q Consensus 506 i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (559)
+++.+.+.+.+. ++...+...+++.++..++.+.+.++.++
T Consensus 437 i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 437 LNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887654 55555555555555555544444444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=280.83 Aligned_cols=356 Identities=14% Similarity=0.085 Sum_probs=270.0
Q ss_pred HHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 008624 105 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 184 (559)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~ 184 (559)
++++..+..+++...+.+.++.+.++ +|.+..+.+++.+++.++..++++++|+++||+|||++++.+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 34455566777777888888877766 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHH
Q 008624 185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 264 (559)
Q Consensus 185 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 264 (559)
++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+.. +||+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~ 155 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988876 9999
Q ss_pred HHHhhhHHHHHHHH-HHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccccc
Q 008624 265 MYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 343 (559)
Q Consensus 265 ~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (559)
.|++.+++.++..+ ..+++||+++.. .+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~ 186 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETRPVD-------------------------------------------------APRT 186 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCSTTT-------------------------------------------------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCCC-------------------------------------------------cccc
Confidence 99998888877766 335677754310 0001
Q ss_pred ccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008624 344 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 422 (559)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 422 (559)
+.+.++++.+|+|.++...+..++...... ....+.|.++++ .+.+. ...+.......++.+++.++.+++.||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r 261 (375)
T 2gfp_A 187 RLLTSYKTLFGNSGFNCYLLMLIGGLAGIA----AFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKR 261 (375)
T ss_dssp CTTTCSTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHTTTTH
T ss_pred cHHHHHHHHhcCcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123345677777766666555444444333 355566666655 56655 678889999999999999999999999
Q ss_pred cCCchhhhhhhHH-HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHH
Q 008624 423 LGRRPLLIGGVCG-IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF 501 (559)
Q Consensus 423 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 501 (559)
.+++ ...+... ...+...+..... ...+.+......++.+.+.+. ..+....+..|..| ++|+++.|+.+...+
T Consensus 262 ~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~ 336 (375)
T 2gfp_A 262 FSTL--MWQSVICCLLAGLLMWIPDWF-GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQN 336 (375)
T ss_dssp HHHH--HHHHHHHHHHTSSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHhhh-ccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHH
Confidence 8772 2222222 2222221111110 011233333334444444433 34566688889988 899999999999999
Q ss_pred HHHHHHHHhhHHhHHhhhhhHHHHHH
Q 008624 502 GSNAIVTFAFSPLKVFIHFSIKMVST 527 (559)
Q Consensus 502 ~g~~i~~~~~g~~~~~~g~~~~~~~~ 527 (559)
+|..++|.+.|.+.+..++...+...
T Consensus 337 ~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 337 IGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999998887776665543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-30 Score=254.60 Aligned_cols=356 Identities=13% Similarity=0.063 Sum_probs=225.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH---HHHHhhcch-hhHHHHHHHHhHHHHhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA---LTTAYAPGL-GVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~-~~l~~~r~l~G~~~g~~ 213 (559)
+|++..+.|++.+.+.++..++++++|+++||+|||++++++..+++++. ..+.+++.. ..++..+++.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999888776532 222233221 12445566666555544
Q ss_pred hhhHhHHHhhcCCC--CccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHH
Q 008624 214 MHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL 291 (559)
Q Consensus 214 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 291 (559)
.+.....+.++.++ ++|+...+.......+|..++|.+++++.+ . +||+.|++.++..++..+..++.+|+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-- 193 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-I-NNQFVFWLGSGCALILAVLLFFAKTDAPS-- 193 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-H-CSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence 44444444444432 456777788877888999999999998876 3 79999998887766555555555443210
Q ss_pred HHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHH
Q 008624 292 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 371 (559)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (559)
+.+ .++ .++ ...++....+++++++++.++...+........
T Consensus 194 ------~~~----------------~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 194 ------SAT----------------VAN-AVG---------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp ------SSC----------------SSS-SSS---------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------ccc----------------ccc-ccc---------------cccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 000 000 000 000001112345667777665544432222221
Q ss_pred HhhCcchhhhchHHHHHHcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHh
Q 008624 372 QITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 448 (559)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (559)
. .....+.|.++.+.... .....+.......++.+++.++.+++.||++||+.+..+..+.+++.+++..
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--- 308 (417)
T 2cfq_A 236 Y----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--- 308 (417)
T ss_dssp H----HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred H----HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---
Confidence 1 12333456665543211 1134567777777888899999999999999999888777776665544432
Q ss_pred hcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHH-HHHHHHHHHHHHHhhHHhHHhhhhhHHHHHH
Q 008624 449 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKVFIHFSIKMVST 527 (559)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~ 527 (559)
..+.+..+...++...+.. ...+..+.+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...+...
T Consensus 309 --~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 309 --ATSALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp --CCSHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred --hccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 1223333222222222222 22223357889999999999999995 7888899999999999999988877777766
Q ss_pred HHHHHHHHHHHHHhhccc
Q 008624 528 WFMILLFDWLVQFCRSCW 545 (559)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~ 545 (559)
+++.++..++.+...+++
T Consensus 386 ~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 386 GLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHHHHhhhcCC
Confidence 666665555544444433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=243.64 Aligned_cols=142 Identities=15% Similarity=0.209 Sum_probs=132.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHhHHHHhhhhhH
Q 008624 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 140 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
++..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hHHHhhcCCCCccchhhhH---HHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 218 PLYIAETCPSQIRGTLISL---KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
.+++.|++|+++|+++.+. .+.+.++|.++||.+++.+.+.. +||+.|++.+++.++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 89999999999999999988877 9999999988887766665544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=136.14 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=129.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHH-HHHHHHHhh--cchhhHHHHHHHHhHHHHh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL--GRKRELIIAAVLYA-LGALTTAYA--PGLGVLLVGRLLYGLGIGL 212 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~--Grr~~~~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 212 (559)
+|.+..+.+++.+.+.++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999 99999888877776 666666665 3677888888999999998
Q ss_pred hhhhHhHHHhhcCCCCccchhhhHHHHHHHH-HHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc
Q 008624 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 283 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 283 (559)
..+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.. +|+..|++.+++.++..++.+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 9999999999999987 89999999888888777666544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=129.45 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=125.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhH
Q 008624 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL 219 (559)
Q Consensus 140 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 219 (559)
.+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888999999999999999999999999999888888888888888888888888888888777777889
Q ss_pred HHhhcCCCCccchhhhH-HHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHh-ccCCc
Q 008624 220 YIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPS 286 (559)
Q Consensus 220 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~ 286 (559)
++.|.+|++.|+.+.++ ++....+|.+++|.+++.+.+.. +++..|.+.++++++..++.+ +.+|.
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999998 47888899999999999988876 899999998888887776654 45554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-12 Score=124.56 Aligned_cols=139 Identities=12% Similarity=-0.042 Sum_probs=109.9
Q ss_pred chhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHH
Q 008624 377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456 (559)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (559)
.......|.+.++.+.+. .+.+++.....++..++.++.|+++||+|||+.+..+.++.+++.+++..... ..+.+.
T Consensus 43 ~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~ 119 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMNYTL 119 (438)
T ss_dssp HHHHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HhHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--cccHHH
Confidence 456666788888899887 88999999999999999999999999999999999999999888887743221 133344
Q ss_pred HHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH-Hhhh
Q 008624 457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-VFIH 519 (559)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~-~~~g 519 (559)
.++..++.+.+.+ ...+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 120 l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 120 FLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444444444443 344455688999999999999999999999999999999999988 4443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-11 Score=122.86 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=119.9
Q ss_pred hhhhchHHHHHH------cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHHHHHHHHHHHHHHhhc
Q 008624 378 SVLYYAGPILQS------AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL 450 (559)
Q Consensus 378 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (559)
....+.+.++++ .+.+. .+.+++.....++..++.++.|+++|| +|||+.+..+.++.+++.+++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---- 105 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP---- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHHHHhccchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh----
Confidence 344556666654 67776 889999999999999999999999999 899999999988888887776542
Q ss_pred CchhHHHHHHHHHHHHHhhcccccccceeecccCCcch--hhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHH
Q 008624 451 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTW 528 (559)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~ 528 (559)
++.+..++..++.+.+.+ ...+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+..||.+.+.+.+
T Consensus 106 -~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 106 -FGASALFGSIILIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp -CSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334444444444444333 344556688999999888 7778888899999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHh
Q 008624 529 FMILLFDWLVQFC 541 (559)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (559)
+..++..++....
T Consensus 184 ~~~~~~~~~~~~~ 196 (491)
T 4aps_A 184 IGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6555554444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-12 Score=122.64 Aligned_cols=160 Identities=11% Similarity=0.007 Sum_probs=122.6
Q ss_pred hhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHH
Q 008624 378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 457 (559)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (559)
......|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+++... ++.+..
T Consensus 18 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l 91 (375)
T 2gfp_A 18 IYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-----SSLTVL 91 (375)
T ss_dssp HHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred HHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----ccHHHH
Confidence 35556677778888887 789999999999999999999999999999999999999888888877663 223333
Q ss_pred HHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 008624 458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWL 537 (559)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 537 (559)
+...++.+ .......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||...+...++..++..++
T Consensus 92 ~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 170 (375)
T 2gfp_A 92 IAASAMQG-MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFS 170 (375)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH-HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 33333333 33333445666888999999999999999999999999999999999999889888887666655544443
Q ss_pred HHHhhcc
Q 008624 538 VQFCRSC 544 (559)
Q Consensus 538 ~~~~~~~ 544 (559)
.....++
T Consensus 171 ~~~~~~~ 177 (375)
T 2gfp_A 171 MARWMPE 177 (375)
T ss_dssp CCCSSCC
T ss_pred HHHHCcc
Confidence 3333333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-10 Score=117.05 Aligned_cols=153 Identities=9% Similarity=-0.011 Sum_probs=115.8
Q ss_pred hhhchHHHHH-HcC------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHHHHHHHHHHHHHHhhc
Q 008624 379 VLYYAGPILQ-SAG------FSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKIL 450 (559)
Q Consensus 379 ~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (559)
...+.+.++. +.+ .+. .+.+++.....++..++.++.|+++||+ |||+.+..+.++.+++.+++...
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---- 105 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---- 105 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----
Confidence 4455666654 466 666 7899999999999999999999999999 99999999888888887776652
Q ss_pred Cc-hhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHH---HHHHHHHHHHHHHHhhHHhHHhhhhhHHHHH
Q 008624 451 GG-FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL---AVLTNFGSNAIVTFAFSPLKVFIHFSIKMVS 526 (559)
Q Consensus 451 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~ 526 (559)
. +.+..++..++.+.+. ....+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+.+..||.+.+.+
T Consensus 106 -~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGS-GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhc-cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 2 3344444444444333 34445666889999999999776666 8888999999999999999999999888877
Q ss_pred HHHHHHHHHHHH
Q 008624 527 TWFMILLFDWLV 538 (559)
Q Consensus 527 ~~~~~~~~~~~~ 538 (559)
.+++.++..++.
T Consensus 184 ~~~~~~~~~~~~ 195 (524)
T 2xut_A 184 PGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655444443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-10 Score=115.79 Aligned_cols=150 Identities=18% Similarity=0.032 Sum_probs=109.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc----chhhHHHHHH-HHhHHHHh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GLGVLLVGRL-LYGLGIGL 212 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~-l~G~~~g~ 212 (559)
.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... ..+..++.-+ ..+.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 455666777777778888999999999999999999999999888888776655421 1122222222 22222223
Q ss_pred hhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC-----cchHHHHHhhhHHHHHHHHHH-hccCCc
Q 008624 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGIGM-WSLPPS 286 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-----~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 286 (559)
..++...+.+|.+|.+.|++++|+......+|.++++.+.+.+.+.. .++.+.|++.++++++..+.. +++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 45677889999999999999999999999999999888776654321 145567888888887777655 678997
Q ss_pred h
Q 008624 287 P 287 (559)
Q Consensus 287 p 287 (559)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 5
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 559 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-16 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 0.002 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 4e-05 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 79.0 bits (193), Expect = 3e-16
Identities = 57/432 (13%), Positives = 114/432 (26%), Gaps = 40/432 (9%)
Query: 107 ALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSI 166
G+ FGY +L P L S LG +SG ++ S+
Sbjct: 26 IFLGIFFGYAAYYLVRKNFALAMPYLVE---QGFSRGDLGFALSGISIAYGFSKFIMGSV 82
Query: 167 ADFLGRKRELIIAAVLYALGALT----TAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 222
+D + L +L A L + V+ V L G G+ +
Sbjct: 83 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142
Query: 223 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282
+ RG ++S+ +G + + + W + A A+L+ + ++
Sbjct: 143 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202
Query: 283 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 342
+ + + A +L +
Sbjct: 203 MMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI---------------------- 240
Query: 343 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVS 402
V L I + +L ++ L+ A ++
Sbjct: 241 -----FMQYVLPNKLLWYIAIAN----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY 291
Query: 403 VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALL 462
+ + T + D + R GV + L + Y+ G P V + +
Sbjct: 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM-ICM 350
Query: 463 LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSI 522
+ +G + L E+ P + G L + ++ A F
Sbjct: 351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY-TVDFFGW 409
Query: 523 KMVSTWFMILLF 534
+
Sbjct: 410 DGGFMVMIGGSI 421
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 0.002
Identities = 35/246 (14%), Positives = 70/246 (28%), Gaps = 5/246 (2%)
Query: 56 LLAPKFNVKTRKSVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGY 115
L A T +S G + ++ QE + + L L +
Sbjct: 198 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 257
Query: 116 DIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRE 175
++ L + + + Y + G++L ++D + R
Sbjct: 258 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR 317
Query: 176 LII-----AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR 230
V A A V ++ ++ G I + L+ E P +
Sbjct: 318 GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 377
Query: 231 GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWL 290
GT LF LG + GW + + ++L I + + +
Sbjct: 378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR 437
Query: 291 LLRAVQ 296
+ +Q
Sbjct: 438 HEQLLQ 443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 43.6 bits (101), Expect = 4e-05
Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 7/159 (4%)
Query: 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 197
++S G++ + +LL L ++D LG ++ L+ +
Sbjct: 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97
Query: 198 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQI------RGTLISLKELFIVLGILLGYFV 251
+L L+ + G+ + A + I +F +G LG +
Sbjct: 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157
Query: 252 GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWL 290
+ + S +L + ++ +P
Sbjct: 158 VGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 559 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.54 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.39 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-38 Score=315.27 Aligned_cols=402 Identities=14% Similarity=0.040 Sum_probs=280.5
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 008624 100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 179 (559)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~ 179 (559)
|.++..+.++.+...++...++...|.+. + +|+|.+|+|++.+++.++++++++++|+++||+|||+++.++
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~-------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 95 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-E-------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 95 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-S-------STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 34455556666777777666666666553 3 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh----cchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhh
Q 008624 180 AVLYALGALTTAYA----PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255 (559)
Q Consensus 180 ~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 255 (559)
.++.+++.++++++ ++++.++++|++.|++.|...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 99999999998876 58899999999999999999999999999999999999999999999999999999998887
Q ss_pred cCCCcchHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHH
Q 008624 256 INAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334 (559)
Q Consensus 256 ~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (559)
.....+||+.|++.+++.++..++. ++.+|+|+..... ..++.+....++ ..
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~---~~- 228 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP-----------------------PIEEYKNDYPDD---YN- 228 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC-----------------------SCTTTCCC----------
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccc-----------------------hhhhhhhhcccc---hh-
Confidence 7765589999999888887766655 4555555311000 000000000000 00
Q ss_pred HhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHc-CCCCchhHHHHHHHHHHHHHHHH
Q 008624 335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMT 413 (559)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 413 (559)
.+.+.+....+...+..++++.++......++..... .....+.+.++.+. +.+. ...+.......++.+++.
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 302 (447)
T d1pw4a_ 229 -EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGT 302 (447)
T ss_dssp --------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHHH
T ss_pred -hccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhh----hcchhhhhhhccccccccc-chhhhhhhcchhhhhhhh
Confidence 0000111122223445566655555444333333332 34666777777664 4554 788999999999999999
Q ss_pred HHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHH
Q 008624 414 WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 493 (559)
Q Consensus 414 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 493 (559)
++.|++.||++|++..........+....+.........+.+......++.+ +...+..+....+..|.+|++.|+++.
T Consensus 303 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~p~~~~g~~~ 381 (447)
T d1pw4a_ 303 LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAA 381 (447)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred hhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 9999999999987655544444333333333222111223333333333333 333334445567889999999999999
Q ss_pred HHHHHHHHHH-HHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 008624 494 SLAVLTNFGS-NAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRS 543 (559)
Q Consensus 494 g~~~~~~~~g-~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 543 (559)
|+.+.+.+++ .+++|.+.|.+.|..|+...+.+...+.++..++...+.+
T Consensus 382 g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988875 5668899999999999988877766666555554444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=5.5e-29 Score=245.00 Aligned_cols=375 Identities=13% Similarity=0.024 Sum_probs=242.3
Q ss_pred hhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh
Q 008624 114 GYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA 193 (559)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~ 193 (559)
.+..+...+.++....++ +|+|.+++|++.+++.++..++++++|+++||+|||++++++..+..++.++..+.
T Consensus 20 ~~~~~~~~~~l~~~l~~~------~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~ 93 (417)
T d1pv7a_ 20 FFIMGAYFPFFPIWLHDI------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555433221 89999999999999999999999999999999999999999999999998888886
Q ss_pred cchhh----HHHHHHHHhHHHHhhhhhHhHHHhhcCCC--CccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHH
Q 008624 194 PGLGV----LLVGRLLYGLGIGLAMHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYG 267 (559)
Q Consensus 194 ~~~~~----l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 267 (559)
.+... .++.+++.+.+.+...........+..++ +++.+..+........+..+++.+++.+.+. +|+..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~ 171 (417)
T d1pv7a_ 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFW 171 (417)
T ss_dssp THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--ccccccc
Confidence 65544 44455555555554444444444444332 3456677788888899999999999987765 4555555
Q ss_pred hhhHHHH-HHHHHHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccc
Q 008624 268 LSAPLAL-LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 346 (559)
Q Consensus 268 ~~~~~~~-~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (559)
....... +..+..+..+|+++....+ +. ++...+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-------------------------------~~~~~~~~~~ 210 (417)
T d1pv7a_ 172 LGSGCALILAVLLFFAKTDAPSSATVA----------NA-------------------------------VGANHSAFSL 210 (417)
T ss_dssp HHHHHHHHHHHHHHSSCCCSCSSSCSS----------HH-------------------------------HHSCCCCCCH
T ss_pred chhhHHHHHHHHHHHHhcccccchhhh----------hh-------------------------------hhhhcccccc
Confidence 5554444 4444556666654311000 00 0000111111
Q ss_pred cchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHHcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 347 GSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDL 423 (559)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 423 (559)
....+.++.+..+............... .......+....... .....+.......++..++..+.+++.||.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 286 (417)
T d1pv7a_ 211 KLALELFRQPKLWFLSLYVIGVSCTYDV----FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI 286 (417)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHh----hhccccccccccccccccchhhhcccccccccccccchhhhhhhhccc
Confidence 2223334444334333333222222211 111122222211111 114566677778888899999999999999
Q ss_pred CCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHH-HHHHH
Q 008624 424 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFG 502 (559)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~ 502 (559)
++++.+..+..+.+++.+.+... .+.+..+...++.+.+.+. ..+...++..|.+|++.|+++.|+.. ....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (417)
T d1pv7a_ 287 GGKNALLLAGTIMSVRIIGSSFA-----TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQL 360 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHH
T ss_pred ccccchhhhHHHHHHhhhccccc-----cccchhhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHH
Confidence 99999998888888877766542 3444444444444444443 34455688899999999999999865 55779
Q ss_pred HHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 008624 503 SNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQ 547 (559)
Q Consensus 503 g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (559)
|..++|.+.|.+.|..|+...+.+.+++.++..++..+..+++++
T Consensus 361 g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999999999999999988888777777666666665554444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=2.4e-14 Score=139.11 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=131.8
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhH
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCCCccchhhhHH-HHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 218 PLYIAETCPSQIRGTLISLK-ELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
.+++.|.+|+++|+++.++. +....+|..++|.++|++.+.. ||+..|++.+++.++..++.++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 5677899999999999999988 9999999988888776665543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=2.9e-12 Score=125.83 Aligned_cols=144 Identities=16% Similarity=0.124 Sum_probs=115.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH---HHHHHHh--hcchhhHHHHHHHHhHHHHh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL---GALTTAY--APGLGVLLVGRLLYGLGIGL 212 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i---~~~~~~~--~~~~~~l~~~r~l~G~~~g~ 212 (559)
++.+..+.++..+.+.++..++.++.|+++||++||+..........+ +.++... ..+.+..+++-++.|++.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 359 (447)
T d1pw4a_ 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 359 (447)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999987544333332222 2222222 45677788888899999888
Q ss_pred hhhhHhHHHhhcCCCCccchhhhHHHHHHHH-HHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
..+....++.|.+|++.|+++.|+.+....+ |.+++|.+.+.+.+.. ||+..|++.++..++..++..+
T Consensus 360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998877666 6778899999999988 9999998888777766665543
|