Citrus Sinensis ID: 008631

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
Protein Sequence
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYGTSAPSDSQDVNGSTPPDHMKVEL
Secondary Structure (PSIPRED)
cccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEcccccccccccccccccEEccccccccccccccccccccccccccccHcHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccEEEc
Coil and Loop (DISEMBL)
MDMSDKDKFVLEkrndnpmdyhspnmssdwqfsGANLANAALnlvptgnplgvgssscssapmvdsfnqtiwdhptnsqslgycnidaqhnasssnalgirkgssaslrscidrpldigwnpassmikggiflpnapgmfpqslsqfpadSAFIERAArfssfsggnfcdmmntfgtpeptglysrgrgmmqgpqevfagnglkslsggqsqknemnvaevskdaslsvehgasngstlknerkgeslvnshgeakqgvgasggdsdeaefsggggqdepsavegtggepsakglsskkrkrngqdiefdqakggqssgeaakdntenqrkgdhkpsstgnksagkqgkqgsqtsdppkeeYIHVRArrgqatnshsLAERVRREKISERMKFLQDLvpgcskvtgkAVMLDEIINYVQSLQRQVEFLSMKLatvnprldFNIEELLAKdvlqsragpsstlgfspdmplvyppvhqsqaglmhgalpgmgnpsdILRRTInsqltpmtggfkepsqvanVWEDELHNVVqmsygtsapsdsqdvngstppdhmkvel
Flexible Loop (DISEMBL)
MDMSDKDKFVLEkrndnpmdyhSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVehgasngstlknerKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQdepsavegtggepsakglsskkrkrnGQDIefdqakggqssgeaakdntenqrkgdhkpsstgnksagkqgkqgsqtsdppKEEYIHVrarrgqatnshslaeRVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYgtsapsdsqdvngstppdhmkvel
Low Complexity Region (SEG)
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGanlanaalnlVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYGTSAPSDSQDVNGSTPPDHMKVEL
Disordered region (IsUnstruct)
*********************************GANLANAALNLVPT******************SFNQTIWDHPTNSQSLGYCNID*********************RSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFG**********************************************************************************************************************************************************************************************************************MKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVL*****************************************************************VANVWEDELHNVV****************************
Disordered Region (DISOPRED)
******************************************************************FNQTIWD*******************************************************************************FI**************************************************************************************************************************************************************************************************************************************EKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAT*********************************************************************************************N************************HMKVEL
Disordered Region (DISEMBL)
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKG**********************************************************GQDIEFDQ***********************************************KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYGT**********************
Disordered Region (DISPRO)
*******KFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPL*V*SSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMM**P**********S*********************************************************************************************************************************************************KEEYIHVRARRGQ***SHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYG***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYGTSAPSDSQDVNGSTPPDHMKVEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	558	2.2.26 [Sep-21-2011]
Q9CAA9	486	Transcription factor bHLH	yes	no	0.815	0.936	0.506	1e-121
Q9C670	390	Transcription factor bHLH	no	no	0.684	0.979	0.364	6e-72
Q9SRT2	456	Transcription factor bHLH	no	no	0.439	0.537	0.421	9e-48
Q6NKN9	366	Transcription factor bHLH	no	no	0.326	0.497	0.513	2e-47
Q8GY61	335	Transcription factor bHLH	no	no	0.202	0.337	0.709	2e-41
Q9LK48	371	Transcription factor bHLH	no	no	0.390	0.587	0.429	5e-41
Q0JXE7	343	Transcription factor BPE	no	no	0.331	0.539	0.446	7e-37
Q9ZPW3	337	Transcription factor bHLH	no	no	0.290	0.480	0.505	5e-36
Q93W88	286	Transcription factor bHLH	no	no	0.263	0.513	0.559	6e-36
Q93VJ4	304	Transcription factor BEE	no	no	0.224	0.411	0.576	5e-35

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  436 bits (1121), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 274/541 (50%), Positives = 332/541 (61%), Gaps = 86/541 (15%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNM-SSDWQFSGANLANAALNLVPTGNPLGVGSSSCS 59
           MD+S KD+F  EKRN  P +Y S N  S DW+          ++  P+ N +  G +SCS
Sbjct: 1   MDLSAKDEFSAEKRN--PDNYDSVNNPSGDWR----------VDSYPSENLISAGPASCS 48

Query: 60  SAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIG 119
            + M+DSF QT+W  PT+ Q++GY   +   NASSS           S R  IDR L++G
Sbjct: 49  PSQMMDSFGQTLWYDPTSVQAVGYAGFNG-GNASSS-----------SFRGSIDRSLEMG 96

Query: 120 WN-PASSMIKG-GIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNT-FG 176
           WN P     KG G+FLPNA    P S++QFPADS FIERAARFS FSGGNF DM+N   G
Sbjct: 97  WNLPNLLPPKGNGLFLPNASSFLPPSMAQFPADSGFIERAARFSLFSGGNFSDMVNQPLG 156

Query: 177 TPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNG 236
             E  GL+ +G G MQG                Q Q NE+NV E   D S++V+      
Sbjct: 157 NSEAIGLFLQGGGTMQG----------------QCQSNELNVGEPHNDVSVAVK------ 194

Query: 237 STLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLS 296
                    ES V S  +AK  V  SG  S++ + SGG GQ         G E S+   +
Sbjct: 195 ---------ESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQ--------KGRETSS---N 234

Query: 297 SKKRKRNGQ-DIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKS-AGKQGKQGSQT 354
           +KKRKRNGQ + E  Q+   Q S E   +N + +R  +  P+S G KS +GKQ  QG Q+
Sbjct: 235 TKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQ--QGKQS 292

Query: 355 SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEI 414
           SDPPK+ YIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGC+KVTGKAVMLDEI
Sbjct: 293 SDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEI 352

Query: 415 INYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPP 474
           INYVQSLQRQVEFLSMKLATVNP++DFN+E LLAKD LQ RAG SST  F P+M + YPP
Sbjct: 353 INYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPPNMSMAYPP 412

Query: 475 VHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSY 534
           +     G M   L  +G       RTI S L+PM GGFK   Q  N WE +L NV+ ++Y
Sbjct: 413 LPH---GFMQQTLSSIG-------RTITSPLSPMNGGFKR--QETNGWEGDLQNVIHINY 460

Query: 535 G 535
           G
Sbjct: 461 G 461

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  272 bits (695), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 274/562 (48%), Gaps = 180/562 (32%)

Query: 3   MSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSSAP 62
           MSDKD+F  +K++                     L N  ++L P  NP+ +G S     P
Sbjct: 1   MSDKDEFAAKKKD---------------------LVNTPVDLYPPENPM-LGPS-----P 33

Query: 63  MVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLR--SCIDRPLDIGW 120
           M+DSF +T+W                 H+        +   +  S R  + ID PL++GW
Sbjct: 34  MMDSFRETLW-----------------HDG----GFNVHTDADTSFRGNNNIDIPLEMGW 72

Query: 121 NPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMN----TFG 176
           N                      ++QFPADS FIERAA+FS F  G    MMN    + G
Sbjct: 73  N----------------------MAQFPADSGFIERAAKFSFFGCGEM--MMNQQQSSLG 108

Query: 177 TPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNG 236
            P+ TGL+ +   +  G +          L  G                        ++ 
Sbjct: 109 VPDSTGLFLQDTQIPSGSK----------LDNGP----------------------LTDA 136

Query: 237 STLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLS 296
           S L  ER   ++                 S++++ SGG G D+        G+ S+KG S
Sbjct: 137 SKLVKERSINNV-----------------SEDSQSSGGNGHDDAKC-----GQTSSKGFS 174

Query: 297 SKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSD 356
           SKKRKR G+D E ++ K               ++K +  P+S  NK+  ++     Q SD
Sbjct: 175 SKKRKRIGKDCEEEEDK---------------KQKDEQSPTSNANKTNSEK-----QPSD 214

Query: 357 PPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIIN 416
             K+ YIH+RARRGQATNSHSLAERVRREKISERMKFLQDLVPGC KVTGKAVMLDEIIN
Sbjct: 215 SLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIIN 274

Query: 417 YVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPV- 475
           YVQSLQ Q+EFLSMKL+ VNP LDFN+E LLAKD LQS A P+    F  +M ++YPPV 
Sbjct: 275 YVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSA-PT----FPHNMSMLYPPVS 329

Query: 476 HQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYG 535
           + SQ G M   +               S ++ ++GG K   Q  + +E + HN+V M++ 
Sbjct: 330 YLSQTGFMQPNI---------------SSMSLLSGGLKR--QETHGYESDHHNLVHMNHE 372

Query: 536 TSAPSDSQDVNGSTPPDHMKVE 557
           T    D +D         MKVE
Sbjct: 373 TGTAPDHEDTTAD-----MKVE 389

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  191 bits (486), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 165/304 (54%), Gaps = 59/304 (19%)

Query: 279 EPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSS 338
           +P A     GE S  G  S+KRK           K  Q+S  A   + E + K D  P  
Sbjct: 188 KPLASHVPAGESS--GELSRKRK----------TKSKQNSPSAVSSSKEIEEKEDSDP-- 233

Query: 339 TGNKSAGKQGKQGSQT-SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDL 397
              K   K  + G +T S  P ++YIHVRARRGQAT+SHSLAERVRREKISERMK LQDL
Sbjct: 234 ---KRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDL 290

Query: 398 VPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKD------- 450
           VPGC+KVTGKA+MLDEIINYVQSLQRQVEFLSMKL++VN RLDFN++ LL+KD       
Sbjct: 291 VPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSNN 350

Query: 451 ------VLQSRAGPSSTLG--------FSPDMPL--VYPPVHQSQAGLMHGALPGMGNPS 494
                 VLQ  +   + LG         +PD+    V  P+  S+       LP + + +
Sbjct: 351 LMHHQQVLQLDSSAETLLGDHHNKNLQLNPDISSNNVINPLETSETRSFISHLPTLAHFT 410

Query: 495 DILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYGTSAPSDSQDVNGSTPPDHM 554
           D +                  SQ +   ED+LH+++ M +  +   +    + +  P HM
Sbjct: 411 DSI------------------SQYSTFSEDDLHSIIHMGFAQNRLQELNQGSSNQVPSHM 452

Query: 555 KVEL 558
           K EL
Sbjct: 453 KAEL 456

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score =  191 bits (484), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/218 (51%), Positives = 139/218 (63%), Gaps = 36/218 (16%)

Query: 323 KDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERV 382
           + N ++Q+K  HK     ++S     K+ SQ+ + PKE YIH+RARRGQATNSHSLAERV
Sbjct: 170 RGNDQSQKK--HK----NDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERV 223

Query: 383 RREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFN 442
           RREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYVQSLQ+QVEFLSMKLATVNP ++ +
Sbjct: 224 RREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINID 283

Query: 443 IEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTIN 502
           I+ +LAKD+LQSR   + TLG +P             AG   G +P        L  T N
Sbjct: 284 IDRILAKDLLQSRDRNTPTLGLNP------------FAGF-QGNIPN-------LSATTN 323

Query: 503 SQLTPMTGGFKEPSQVANVWEDELHNVVQMSYGTSAPS 540
            Q  P+              E EL N+ QM +  S PS
Sbjct: 324 PQYNPLP---------QTTLESELQNLYQMGF-VSNPS 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 97/117 (82%), Gaps = 4/117 (3%)

Query: 354 TSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 413
           T +  K +YIHVRARRGQAT+SHS+AERVRREKISERMKFLQDLVPGC K+TGKA MLDE
Sbjct: 161 TKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDE 220

Query: 414 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPL 470
           IINYVQSLQRQ+EFLSMKLA VNPR DF+++++ AK+V    A    T+  SP+M L
Sbjct: 221 IINYVQSLQRQIEFLSMKLAIVNPRPDFDMDDIFAKEV----ASTPMTVVPSPEMVL 273

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  169 bits (428), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/247 (42%), Positives = 142/247 (57%), Gaps = 29/247 (11%)

Query: 266 SDEAEFSGGGGQDEPSAVEGTGGE-PSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKD 324
           SD    +    +   S   G G E P++  L++   K +G++     +KGG+ S +    
Sbjct: 104 SDRVHTTKSNSRKRKSIPSGNGKESPASSSLTASNSKVSGEN---GGSKGGKRSKQDVAG 160

Query: 325 NTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRR 384
           +++N   G  K  S G+       K  ++  + PK+ YIHVRARRGQAT+SHSLAER RR
Sbjct: 161 SSKN---GVEKCDSKGD------NKDDAKPPEAPKD-YIHVRARRGQATDSHSLAERARR 210

Query: 385 EKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIE 444
           EKISERM  LQDLVPGC+++TGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPR++FN  
Sbjct: 211 EKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEFNAN 270

Query: 445 ELLAKDVLQ---------------SRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPG 489
             L+ +++Q                +  PS+      +MP        S  G +H   PG
Sbjct: 271 ASLSTEMIQPGESLTQSLYAMACSEQRLPSAYYSLGKNMPRFSDTQFPSNDGFVHTETPG 330

Query: 490 MGNPSDI 496
               +D+
Sbjct: 331 FWENNDL 337

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1

 Score =  155 bits (392), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 120/204 (58%), Gaps = 19/204 (9%)

Query: 261 ASGGDSDEAEFSGGGGQDEPSAVEGTGGEPS----------AKGLSSKKRKRNGQDIEFD 310
           ++ GDS    F G     +        G+P+           +G+S   ++R       D
Sbjct: 27  STAGDSSRRSFVGPNQFGDADLTTAANGDPARMSHALSQAVIEGISGAWKRRE------D 80

Query: 311 QAKGGQSSGEAAKDNTENQRKGDHKPS--STGNKSAGKQGKQGSQTSDPPKEEYIHVRAR 368
           ++K  +          EN+R+   +        +S G + +Q  Q  +P K+ YIHVRAR
Sbjct: 81  ESKSAKIVSTIGASEGENKRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKD-YIHVRAR 139

Query: 369 RGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFL 428
           RGQAT+SHSLAER RREKISERMK LQDLVPGC+KV GKA++LDEIINY+QSLQRQVEFL
Sbjct: 140 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 199

Query: 429 SMKLATVNPRLDFNIEELLAKDVL 452
           SMKL  VN R++  IE    K+V+
Sbjct: 200 SMKLEAVNSRMNPGIEVFPPKEVM 223

Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3

 Score =  152 bits (385), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 112/176 (63%), Gaps = 14/176 (7%)

Query: 278 DEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPS 337
           D    +  TG E  A  L +K++       E    K  +   E     TE+  KG    S
Sbjct: 104 DTMEVLLKTGEETRAVALKNKRKPEVKTREEQKTEKKIKVEAE-----TESSMKGK---S 155

Query: 338 STGNKSAG----KQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKF 393
           + GN  A     K+  +G+  S+  K +YIHVRARRGQAT+ HSLAER RREKIS++MK+
Sbjct: 156 NMGNTEASSDTSKETSKGA--SENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKY 213

Query: 394 LQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAK 449
           LQD+VPGC+KVTGKA MLDEIINYVQ LQRQVEFLSMKLA +NP L+  +E++  K
Sbjct: 214 LQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELELAVEDVSVK 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score =  152 bits (385), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/161 (55%), Positives = 113/161 (70%), Gaps = 14/161 (8%)

Query: 315 GQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATN 374
           G++ G  A+ N+ N ++G       G KS  K+ K+GS+  + P  +YIHVRARRGQAT+
Sbjct: 96  GKTRGRKAR-NSNNSKEGVE-----GRKS--KKQKRGSK--EEPPTDYIHVRARRGQATD 145

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAT 434
           SHSLAERVRREKISERM+ LQ+LVPGC KVTGKA+MLDEIINYVQ+LQ QVEFLSMKL +
Sbjct: 146 SHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTS 205

Query: 435 VNPRL-DFNIEELLAKDVLQSRAG-PSSTLGFSPDMPLVYP 473
           ++P + DF  +  L   +LQS  G P     F+  MP   P
Sbjct: 206 ISPVVYDFGSD--LDGLILQSEMGSPEVGTSFTNAMPTTTP 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VJ4|BEE2_ARATH Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1

 Score =  149 bits (376), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 97/137 (70%), Gaps = 12/137 (8%)

Query: 322 AKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAER 381
           A+D TE   KG    S+T              +S+  K +YIHVRARRG+AT+ HSLAER
Sbjct: 110 AEDETEPSMKGKSNMSNTET------------SSEIQKPDYIHVRARRGEATDRHSLAER 157

Query: 382 VRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDF 441
            RREKIS++MK LQD+VPGC+KVTGKA MLDEIINYVQSLQ+QVEFLSMKL+ +NP L+ 
Sbjct: 158 ARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVINPELEC 217

Query: 442 NIEELLAKDVLQSRAGP 458
           +I++L AK       GP
Sbjct: 218 HIDDLSAKQFQAYFTGP 234

Positive regulator of brassinosteroid signaling.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	558
224108619	562	predicted protein [Populus trichocarpa]	0.994	0.987	0.707	0.0
255547017	566	conserved hypothetical protein [Ricinus	0.998	0.984	0.698	0.0
359473485	609	PREDICTED: LOW QUALITY PROTEIN: transcri	0.994	0.911	0.696	0.0
297738215	496	unnamed protein product [Vitis vinifera]	0.883	0.993	0.632	0.0
356502674	551	PREDICTED: transcription factor bHLH49-l	0.962	0.974	0.598	1e-171
449434704	561	PREDICTED: transcription factor bHLH49-l	0.983	0.978	0.554	1e-159
356495611	414	PREDICTED: transcription factor bHLH49-l	0.736	0.992	0.657	1e-151
449493518	517	PREDICTED: transcription factor bHLH49-l	0.906	0.978	0.520	1e-146
449518045	533	PREDICTED: transcription factor bHLH49-l	0.937	0.981	0.547	1e-143
449463525	533	PREDICTED: transcription factor bHLH49-l	0.937	0.981	0.544	1e-142

>gi|224108619|ref|XP_002314910.1| predicted protein [Populus trichocarpa] gi|222863950|gb|EEF01081.1| predicted protein [Populus trichocarpa]

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/565 (70%), Positives = 465/565 (82%), Gaps = 10/565 (1%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPN-MSSDWQFSGANLANAALNLVPTGNPLGV------ 53
           MDMSDKDKF L K NDNP++YHSP  +SSDW+F+  ++ N++L LVP  N + V      
Sbjct: 1   MDMSDKDKFELGKSNDNPINYHSPGGLSSDWRFNSTSIPNSSLGLVPIDNQMSVCRGDLV 60

Query: 54  GSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCID 113
           G++SCSSA ++DSF   +W+HPTNSQ+L +C+I+ Q+ ASSSN +GI KG+ ASLR+ ID
Sbjct: 61  GAASCSSASVIDSFGPAMWEHPTNSQNLVFCDINVQNIASSSNTVGIGKGAPASLRNGID 120

Query: 114 RPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMN 173
           R L++GWNP +SM+KGG FLPNAPGM PQSLSQFPADSAFIERAARFS F+GG+F DM+N
Sbjct: 121 RTLEMGWNPPNSMLKGGNFLPNAPGMLPQSLSQFPADSAFIERAARFSCFNGGDFGDMVN 180

Query: 174 TFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGA 233
            FG PE  GL+SRG GMMQGP EVF G+G+KS+SGGQ+QKN MN  E SKD S+SV+H A
Sbjct: 181 PFGVPESMGLFSRGGGMMQGPGEVFVGSGMKSVSGGQAQKNVMNAGEASKDVSMSVDHMA 240

Query: 234 SNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAK 293
           + GS LKNE K ESL  S  EAK+GVG SG DSDEAEFSGG GQDEPS +EG  GE SAK
Sbjct: 241 TEGSPLKNETKRESLARSRDEAKKGVGGSGNDSDEAEFSGGSGQDEPSLLEGNCGELSAK 300

Query: 294 GLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQ 353
            L SKKRKR+G+D E DQAKG   + ++AK + E Q+KGD KP+ST +K++GKQGKQGSQ
Sbjct: 301 SLGSKKRKRSGEDAELDQAKG---TPQSAKGSPETQQKGDQKPTSTTSKASGKQGKQGSQ 357

Query: 354 TSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 413
            SD PKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE
Sbjct: 358 GSDQPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 417

Query: 414 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYP 473
           IINYVQSLQRQVEFLSMKLATVNPRLDFNIE LLAKD+LQSRA P S+L FS +MP+ YP
Sbjct: 418 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQSRAVPPSSLAFSSEMPMAYP 477

Query: 474 PVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMS 533
            +HQSQ GL+  A PGM + SDI+RRTINSQLT MT GFKEP+Q+ NVW+DELHNVVQM+
Sbjct: 478 ALHQSQPGLIPTAFPGMESHSDIIRRTINSQLTAMTAGFKEPAQLPNVWDDELHNVVQMT 537

Query: 534 YGTSAPSDSQDVNGSTPPDHMKVEL 558
           YGTSAP DSQDVN   PP H+KVEL
Sbjct: 538 YGTSAPQDSQDVNEPLPPGHLKVEL 562

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547017|ref|XP_002514566.1| conserved hypothetical protein [Ricinus communis] gi|223546170|gb|EEF47672.1| conserved hypothetical protein [Ricinus communis]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/567 (69%), Positives = 451/567 (79%), Gaps = 10/567 (1%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSP-NMSSDWQFSGANLANAALNLVPTGNPLGV------ 53
           MDMSD DK  LEKR DNP++YHSP NM+SDW+F  +N+ N +L LVPT N + V      
Sbjct: 1   MDMSDMDKLELEKRGDNPINYHSPANMTSDWRFGSSNITNTSLGLVPTDNQMPVCRGDLL 60

Query: 54  GSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCID 113
           G+SSCS+A MVDSF   +WDH TNS +LG+C+I+ Q++ S+SN +G RK    SLR   D
Sbjct: 61  GASSCSTASMVDSFGPGLWDHSTNSLNLGFCDINVQNHPSTSNTIGHRKSGPTSLRVGTD 120

Query: 114 RPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMN 173
           + L +GWNP SSM+KGGIFLP+APG+ PQSLSQFPADSAFIERAARFS F+GGNF DMMN
Sbjct: 121 KALQMGWNPPSSMLKGGIFLPSAPGVLPQSLSQFPADSAFIERAARFSCFNGGNFSDMMN 180

Query: 174 TFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGA 233
            FG PE  GLYSR  GMMQGPQEVFA +GLK+++GGQ Q N   V E SKDAS+S+EH A
Sbjct: 181 PFGIPESMGLYSRSGGMMQGPQEVFAASGLKTVTGGQGQNNVTIVGETSKDASMSIEHVA 240

Query: 234 SNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAK 293
             G  LKNERK +SLV S+ EAKQG G SG +S+EAEFSGGGGQ+E S +EG G E SAK
Sbjct: 241 IEGP-LKNERKSDSLVRSNDEAKQGAGGSGDESEEAEFSGGGGQEEASTLEGNGMELSAK 299

Query: 294 GLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQ 353
            L  KKRKRNGQDIE DQAKG   S EAAKDN E Q+KGD  P+ST NK++GKQGKQGSQ
Sbjct: 300 SLGLKKRKRNGQDIELDQAKGNLQSVEAAKDNVEAQQKGDQTPTSTPNKTSGKQGKQGSQ 359

Query: 354 TSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 413
            SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE
Sbjct: 360 ASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDE 419

Query: 414 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYP 473
           IINYVQSLQRQVEFLSMKLATVNPRLDFNIE LLAKD+L SRA PSSTL FSPDM + YP
Sbjct: 420 IINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILHSRAVPSSTLAFSPDMIMAYP 479

Query: 474 PVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMS 533
           P + SQ GL+  + PGM + SD+LRRTI+SQLTP++G FKEP+Q+ N W+DELHNVVQM 
Sbjct: 480 PFNTSQPGLIQASFPGMESHSDVLRRTISSQLTPLSGVFKEPTQLPNAWDDELHNVVQMG 539

Query: 534 YGTSAPSDSQDVNGSTPP--DHMKVEL 558
           YGT    DSQDVN  + P    MK EL
Sbjct: 540 YGTGTTQDSQDVNAGSLPAAGQMKAEL 566

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473485|ref|XP_003631305.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like [Vitis vinifera]

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/579 (69%), Positives = 458/579 (79%), Gaps = 24/579 (4%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGA--NLANAALNLVPTGNPLGV----- 53
           MDMSDKDKF LEKR+ + ++YHS +MSSDW+F G   NL N +++ V  GNP+ V     
Sbjct: 34  MDMSDKDKFELEKRSGDSLNYHSASMSSDWRFGGGGGNLTNTSMSTVQGGNPMAVCKGDL 93

Query: 54  -GSSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCI 112
            GSSSCSSA MVDSF   +WDHP NSQ+LG+C+++ Q+NAS+S+ LGIRKG   SLR  I
Sbjct: 94  VGSSSCSSASMVDSFGPNLWDHPANSQTLGFCDMNVQNNASTSSTLGIRKGGPGSLRMDI 153

Query: 113 DRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMM 172
           D+ LDIGWNP SSM+KGGIFLPNAPGM PQ LSQFPADS FIERAARFS F+GGNF DMM
Sbjct: 154 DKTLDIGWNPPSSMLKGGIFLPNAPGMLPQGLSQFPADSGFIERAARFSCFNGGNFSDMM 213

Query: 173 NTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHG 232
           N F  PE    YSRG GM+Q  Q+VFA NGLKS+ GGQSQK+E ++AE+SKD S +V  G
Sbjct: 214 NPFSIPESLNPYSRGGGMLQ--QDVFASNGLKSVPGGQSQKDEPSMAEISKDVSSAV-RG 270

Query: 233 ASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGG--QDEPSAVEGTGGEP 290
           A  GS LKNERK ESLV S  EAKQG+G SG +SDEAEFSGGGG  Q+EPS +EGTGGEP
Sbjct: 271 AMEGSPLKNERKSESLVKSLEEAKQGIGVSGNESDEAEFSGGGGGGQEEPSILEGTGGEP 330

Query: 291 SA-KGLSSKKRKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQG 348
           S+ KGL SKKRKR+GQD E DQ KG  Q  GEA+KDN E Q KGD  PSS  +K+ GK G
Sbjct: 331 SSGKGLGSKKRKRSGQDPEIDQVKGSPQQPGEASKDNPEIQHKGDQNPSSVPSKNTGKHG 390

Query: 349 KQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA 408
           KQG+Q SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA
Sbjct: 391 KQGAQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA 450

Query: 409 VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDV--------LQSRAGPSS 460
           VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIE +L KDV        LQSR GPSS
Sbjct: 451 VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGMLGKDVSEIAXQKILQSRVGPSS 510

Query: 461 TLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPS-QVA 519
           T+GFSP+  + YP +H SQ GL+   LPG+GN SD +RRTINSQL  M+GG+KE + Q+ 
Sbjct: 511 TMGFSPETTMPYPQLHPSQPGLIQVGLPGLGNSSDAIRRTINSQLAAMSGGYKESAPQLP 570

Query: 520 NVWEDELHNVVQMSYGTSAPSDSQDVNGSTPPDHMKVEL 558
           NVWEDELHNVVQM + T AP +SQD+NGS PP HMK EL
Sbjct: 571 NVWEDELHNVVQMGFSTGAPLNSQDLNGSLPPGHMKAEL 609

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738215|emb|CBI27416.3| unnamed protein product [Vitis vinifera]

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/561 (63%), Positives = 405/561 (72%), Gaps = 68/561 (12%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGSSSCSS 60
           MDMSDKDKF LEKR+ + ++YHS +MSSDW+F G    +             VGSSSCSS
Sbjct: 1   MDMSDKDKFELEKRSGDSLNYHSASMSSDWRFGGVCKGDL------------VGSSSCSS 48

Query: 61  APMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSCIDRPLDIGW 120
           A MVDSF   +WDHP NSQ+LG+C+++ Q+NAS+S+ LGIRKG   SLR  ID+ LDIGW
Sbjct: 49  ASMVDSFGPNLWDHPANSQTLGFCDMNVQNNASTSSTLGIRKGGPGSLRMDIDKTLDIGW 108

Query: 121 NPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEP 180
           NP SSM+KGGIFLPNAPGM PQ LSQFPADS FIERAARFS F+GGNF DMMN F  PE 
Sbjct: 109 NPPSSMLKGGIFLPNAPGMLPQGLSQFPADSGFIERAARFSCFNGGNFSDMMNPFSIPES 168

Query: 181 TGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGASNGSTLK 240
              YSRG GM+Q  Q+VFA NGLKS+ GGQSQK+E ++AE+SKD S          S  +
Sbjct: 169 LNPYSRGGGMLQ--QDVFASNGLKSVPGGQSQKDEPSMAEISKDVS----------SAKQ 216

Query: 241 NERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSA-KGLSSKK 299
           N+  G                                          GEPS+ KGL SKK
Sbjct: 217 NKELG-----------------------------------------CGEPSSGKGLGSKK 235

Query: 300 RKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPP 358
           RKR+GQD E DQ KG  Q  GEA+KDN E Q KGD  PSS  +K+ GK GKQG+Q SDPP
Sbjct: 236 RKRSGQDPEIDQVKGSPQQPGEASKDNPEIQHKGDQNPSSVPSKNTGKHGKQGAQASDPP 295

Query: 359 KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYV 418
           KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYV
Sbjct: 296 KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYV 355

Query: 419 QSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQS 478
           QSLQRQVEFLSMKLATVNPRLDFNIE +L KD+LQSR GPSST+GFSP+  + YP +H S
Sbjct: 356 QSLQRQVEFLSMKLATVNPRLDFNIEGMLGKDILQSRVGPSSTMGFSPETTMPYPQLHPS 415

Query: 479 QAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPS-QVANVWEDELHNVVQMSYGTS 537
           Q GL+   LPG+GN SD +RRTINSQL  M+GG+KE + Q+ NVWEDELHNVVQM + T 
Sbjct: 416 QPGLIQVGLPGLGNSSDAIRRTINSQLAAMSGGYKESAPQLPNVWEDELHNVVQMGFSTG 475

Query: 538 APSDSQDVNGSTPPDHMKVEL 558
           AP +SQD+NGS PP HMK EL
Sbjct: 476 APLNSQDLNGSLPPGHMKAEL 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502674|ref|XP_003520142.1| PREDICTED: transcription factor bHLH49-like [Glycine max]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 341/570 (59%), Positives = 411/570 (72%), Gaps = 33/570 (5%)

Query: 3   MSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLG-------VGS 55
           MSDK+KF ++ RN++ + Y S  M SDW+F G+NLAN+++  V  GN          +GS
Sbjct: 1   MSDKEKFEVD-RNEDHVSYSS-GMHSDWRFGGSNLANSSVGFVGLGNNSMNVSRGDLIGS 58

Query: 56  SSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHN-ASSSNALGIRKGSSASLRSCIDR 114
           SSCSSA MVDS +   W++PT+SQ LG+C+I+  HN   SS+ + IRK      R   D 
Sbjct: 59  SSCSSASMVDSLSPNYWENPTSSQKLGFCDINNVHNNGGSSSTVAIRKDGFGFGRVGQDH 118

Query: 115 --PLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMM 172
              L++GWN A+SM      LPN P MFP SLSQFP DS FIERAARFS FSGGNF DM+
Sbjct: 119 HGTLEMGWNHANSM------LPNGPVMFPHSLSQFPTDSGFIERAARFSCFSGGNFGDMV 172

Query: 173 NTFGTPEPTGLYSRGRGMMQGPQEVFAGNGLKS-LSGGQSQKNEMNVAEVSKDASLSVEH 231
           N++G  +  GLY        G ++  AG+GLKS ++GGQSQ  +MNV E   D   SVEH
Sbjct: 173 NSYGIAQSMGLY--------GARDAIAGHGLKSVIAGGQSQGGDMNVVE---DVPPSVEH 221

Query: 232 -GASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSG-GGGQDEPSAVEGTGGE 289
             A+ GS LK++R+ E  V    E KQ +  +  +SD AE S  GGGQD+   +EGT GE
Sbjct: 222 LVAAKGSPLKSDRRSEGHVIFQDEGKQSLVRNANESDRAESSDDGGGQDDSPMLEGTSGE 281

Query: 290 PSAKGLSSKKRKRNGQDIEFDQAKGGQS-SGEAAKDNTENQRKGDHKPSSTGNKSAGKQG 348
           PS+KGL+SKKRKR+G+D + D+A G Q    E AK N+ENQ+KGD +P ST NK+ GK  
Sbjct: 282 PSSKGLNSKKRKRSGRDGDNDKANGAQELPSEGAKGNSENQQKGDQQPISTANKACGKNA 341

Query: 349 KQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA 408
           K GSQ SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA
Sbjct: 342 KLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKA 401

Query: 409 VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDM 468
           VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIE LLAKD+LQ R  PS+ LGF  DM
Sbjct: 402 VMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQQRPDPSTALGFPLDM 461

Query: 469 PLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHN 528
            + +PP+H  Q GL+H  +P M N SDIL+RTI+ QL P+ GGFKEP+Q+ +VWEDELHN
Sbjct: 462 SMAFPPLHPPQPGLIHPVIPNMTNSSDILQRTIHPQLAPLNGGFKEPNQLPDVWEDELHN 521

Query: 529 VVQMSYGTSAPSDSQDVNGSTPPDHMKVEL 558
           VVQMS+ T+AP  SQDV+G+ P   MKVEL
Sbjct: 522 VVQMSFATTAPPTSQDVDGTGPASQMKVEL 551

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434704|ref|XP_004135136.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 315/568 (55%), Positives = 384/568 (67%), Gaps = 19/568 (3%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGN------PLGVG 54
           MD+ D+DKF LE   ++ ++  S +MSSDWQF    L      LV  GN         VG
Sbjct: 1   MDIGDRDKFRLESSIEDTINC-SNSMSSDWQFGETTLTTMPTGLVLPGNVDVVRNQDMVG 59

Query: 55  SSSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSC--I 112
            SS S+A MV+SF+ TIW+   + Q+LG  NI   + +++SN +GI K S   + S   I
Sbjct: 60  CSS-STASMVESFSSTIWEQSAHCQNLGISNIQGHNISNTSNIIGISKASGCPVSSSSDI 118

Query: 113 DRPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMM 172
           DR LDI WN + +M+KGG++LPN PGM P SLSQ PADS+FIERAAR S FSGGNF   +
Sbjct: 119 DRTLDISWNLSHNMLKGGVYLPNFPGMLPPSLSQLPADSSFIERAARLSCFSGGNFGGDV 178

Query: 173 NTFGTPEPTGLYSRGRGMMQGPQEVFAGNGL--KSLSGGQSQKNEMNVAEVSKDASLSVE 230
             F  P+P G++SRG G++    +    NGL   S +GGQSQ+N +N +E S    L+ E
Sbjct: 179 GHFNVPDPVGVFSRGMGVIPERWDEIPRNGLGLASGTGGQSQRNVVN-SESSMPVCLTNE 237

Query: 231 HGASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEP 290
           HGA    T ++  K  S +   G  K  V  S  +SDEAE SGG G  EP  +E TG E 
Sbjct: 238 HGA----TERDSPKNGSPLKLDGRGKLAVDGSANESDEAECSGGDGLGEPCTLEATGKEL 293

Query: 291 SAKGLSSKKRKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGK 349
           S KGL ++KRKR+GQ  E DQA G  Q +  + KD+ E QRK D  P+ST NK  GK GK
Sbjct: 294 STKGLGTRKRKRSGQKTELDQANGPLQQTTVSPKDDAETQRKRDQNPNSTANKGTGKHGK 353

Query: 350 QGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAV 409
           Q SQ SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQ+LVPGCSKVTGKAV
Sbjct: 354 QASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAV 413

Query: 410 MLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMP 469
           MLDEIINYVQSLQRQVEFLSMKLATVNPRLD NI+ ++AKD+LQSR GP STLGFS  MP
Sbjct: 414 MLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGVVAKDILQSRVGPLSTLGFSSHMP 473

Query: 470 LVYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNV 529
           +  PP H S   L+  + P +G+ S++LR T+NS +TP +GGFK PSQ+ NVWE EL N+
Sbjct: 474 VACPPPHISHHELIPTSFPAIGS-SEMLRSTMNSHMTPRSGGFKNPSQIKNVWEGELQNL 532

Query: 530 VQMSYGTSAPSDSQDVNGSTPPDHMKVE 557
           VQMS+G   P +  +V GS      KVE
Sbjct: 533 VQMSFGMPTPPNCLEVEGSDSSGRTKVE 560

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495611|ref|XP_003516668.1| PREDICTED: transcription factor bHLH49-like [Glycine max]

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/423 (65%), Positives = 327/423 (77%), Gaps = 12/423 (2%)

Query: 139 MFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMNTFGTPEPTGLYSRGRGMMQGPQEVF 198
           MFP +LSQFP DS FIERAARFS FSGGNF DM+N++G  +  GLY        G ++  
Sbjct: 1   MFPHTLSQFPTDSGFIERAARFSCFSGGNFSDMVNSYGIAQSMGLY--------GARDAI 52

Query: 199 AGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEH-GASNGSTLKNERKGESLVNSHGEAKQ 257
           AG+G+KS++GGQSQ  +MNV E +KD S SVEH  A+ GS LK++R+ E  V S  E KQ
Sbjct: 53  AGHGMKSVTGGQSQGGDMNVVEATKDVSPSVEHLVAAKGSPLKSDRRSEGHVISQDEGKQ 112

Query: 258 GVGASGGDSDEAEFSG-GGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQ 316
            +     +SD AE S  GGGQD+   +EGT GEPS+KGL++KKRKR+GQD + D+A G Q
Sbjct: 113 SLVRPANESDRAESSDDGGGQDDSPMLEGTSGEPSSKGLNTKKRKRSGQDGDNDKANGAQ 172

Query: 317 S-SGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNS 375
               E A+DN ENQ+KGDH+P+ST  K++GK  K GSQ SDPPKEEYIHVRARRGQATNS
Sbjct: 173 ELPSEGAEDNYENQQKGDHQPTSTA-KASGKNAKLGSQASDPPKEEYIHVRARRGQATNS 231

Query: 376 HSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 435
           HSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV
Sbjct: 232 HSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 291

Query: 436 NPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSD 495
           NPRLDFNIE LLAKD+LQ R GPSS LGF  DM + +PP+H  Q GL+H  +P M N SD
Sbjct: 292 NPRLDFNIEGLLAKDILQQRPGPSSALGFPLDMSMAFPPLHPPQPGLIHPVIPNMANSSD 351

Query: 496 ILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYGTSAPSDSQDVNGSTPPDHMK 555
           IL+RTI+ QL P+ GG KEP+Q+ +VWEDELHNVVQMS+ T+AP  SQD +G+ P   MK
Sbjct: 352 ILQRTIHPQLAPLNGGLKEPNQLPDVWEDELHNVVQMSFATTAPLTSQDFDGTGPASQMK 411

Query: 556 VEL 558
           VEL
Sbjct: 412 VEL 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493518|ref|XP_004159328.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 295/567 (52%), Positives = 360/567 (63%), Gaps = 61/567 (10%)

Query: 1   MDMSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGVGS----- 55
           MD+ D+DKF LE   ++ ++  S +MSSDWQF    L      LV  GN   V +     
Sbjct: 1   MDIGDRDKFRLESSIEDTINC-SNSMSSDWQFGETTLTTMPTGLVLPGNVDVVRNQDMVG 59

Query: 56  SSCSSAPMVDSFNQTIWDHPTNSQSLGYCNIDAQHNASSSNALGIRKGSSASLRSC--ID 113
            S S+A MV+SF+ TIW+   + Q+LG  NI   + +++SN +GI K S   + S   ID
Sbjct: 60  CSSSTASMVESFSSTIWEQSAHCQNLGISNIQGHNISNTSNIIGISKASGCPVSSSSDID 119

Query: 114 RPLDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNFCDMMN 173
           R LDI WN + +M+KGG++LPN PGM P SLSQ PADS+FIERAAR S FSGGNF   + 
Sbjct: 120 RTLDISWNLSHNMLKGGVYLPNFPGMLPPSLSQLPADSSFIERAARLSCFSGGNFGGDVG 179

Query: 174 TFGTPEPTGLYSRGRGMMQGPQEVFAGN--GLKSLSGGQSQKNEMNVAEVSKDASLSVEH 231
            F  P+P G++SRG G++    +    N  GL S +GGQSQ+N                 
Sbjct: 180 HFNVPDPVGVFSRGMGVIPERWDEIPRNGLGLASGTGGQSQRN----------------- 222

Query: 232 GASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPS 291
                           +VNS                E+    G G  EP  +E TG E S
Sbjct: 223 ----------------VVNS----------------ESSMPRGDGLGEPCTLEATGKELS 250

Query: 292 AKGLSSKKRKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQ 350
            KGL ++KRKR+GQ  E DQA G  Q +  + KD+ E QRK D  P+ST NK  GK GKQ
Sbjct: 251 TKGLGTRKRKRSGQKTELDQANGPLQQTTVSPKDDAETQRKRDQNPNSTANKGTGKHGKQ 310

Query: 351 GSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVM 410
            SQ SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQ+LVPGCSKVTGKAVM
Sbjct: 311 ASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVM 370

Query: 411 LDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPL 470
           LDEIINYVQSLQRQVEFLSMKLATVNPRLD NI+ ++AKD+LQSR GP STLGFS  MP+
Sbjct: 371 LDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGVVAKDILQSRVGPLSTLGFSSHMPV 430

Query: 471 VYPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVV 530
             PP H S   L+  + P +G+ S++LR T+NS +TP +GGFK PSQ+ NVWE EL N+V
Sbjct: 431 ACPPPHISHHELIPTSFPAIGS-SEMLRSTMNSHMTPRSGGFKNPSQIKNVWEGELQNLV 489

Query: 531 QMSYGTSAPSDSQDVNGSTPPDHMKVE 557
           QMS+G   P +  +V GS      KVE
Sbjct: 490 QMSFGMPTPPNCLEVEGSDSSGRTKVE 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518045|ref|XP_004166054.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 310/566 (54%), Positives = 365/566 (64%), Gaps = 43/566 (7%)

Query: 3   MSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGV-----GSSS 57
           M+ KD+F +E R  +PM     ++SS WQF+  NL N ++    TGNP  V     G SS
Sbjct: 1   MNGKDEFEVENRTSDPM-----SISSAWQFAAPNLTNESVGFDSTGNPSVVSNGDLGVSS 55

Query: 58  CSSAPMVDSFNQTIWDHPTNSQSLGYCN-IDAQHNASSSNALGIRKGSSASLRSCID-RP 115
           C S  M + F   + +H T SQ+ G+C   + Q++  +SN   +      SLRS  D R 
Sbjct: 56  CPSTSMSNLFTPALLNHHTESQNSGFCTTFNEQNSIVTSNTTLVDGEDLNSLRSNGDTRT 115

Query: 116 LDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNF-CDMMNT 174
           L + WN  +  +KG +F  N PG+FP +LSQ PADSAFIERAARFS F+ G F       
Sbjct: 116 LGMDWNQQNPWMKG-VFSGNVPGIFPPNLSQLPADSAFIERAARFSCFNNGVFGAPPAGP 174

Query: 175 FGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGAS 234
           FG  +  G++S G G   G QEV + NG                  VSKD SL +E  A 
Sbjct: 175 FGISDSLGIHSGG-GF--GRQEVISRNG------------------VSKDVSLPMELEAE 213

Query: 235 NGSTLKNERKGESLVNSHGEAKQG-VGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAK 293
             S  KNE+  E    S   AKQG VG SG DSDEA FSGG  QDE   + GT  EPS +
Sbjct: 214 EKSPPKNEKDSEM---SQDRAKQGCVGESGNDSDEAGFSGG--QDEQCTMGGTMTEPSTE 268

Query: 294 GLSSKKRKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGS 352
           GL  KKRKR  Q++   Q K   Q   E AK+   NQ+KG   PSST +K AGKQGKQ S
Sbjct: 269 GLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFNQQKGGQNPSSTTSKPAGKQGKQDS 328

Query: 353 QTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLD 412
           Q SD PKEEYIHVRARRGQATNSHSLAERVRREKISERM+ LQDLVPGCSKVTGKAVMLD
Sbjct: 329 QPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLD 388

Query: 413 EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVY 472
           EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELL K+ +QS+AGP S  GF PDMP+ Y
Sbjct: 389 EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEFIQSKAGP-SLFGFPPDMPVPY 447

Query: 473 PPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQM 532
            P H S  GL+   LP MG+  D+LRRTINSQLT + GGFKEP Q+ N WE+ELHNVV M
Sbjct: 448 LPQHSSHHGLIPPCLPTMGSSPDLLRRTINSQLTSLVGGFKEPVQLPNRWENELHNVVPM 507

Query: 533 SYGTSAPSDSQDVNGSTPPDHMKVEL 558
           ++  SAPS  QDV+GS P  + + EL
Sbjct: 508 NFDVSAPSSGQDVDGSNPQCNTRAEL 533

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463525|ref|XP_004149484.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 308/566 (54%), Positives = 363/566 (64%), Gaps = 43/566 (7%)

Query: 3   MSDKDKFVLEKRNDNPMDYHSPNMSSDWQFSGANLANAALNLVPTGNPLGV-----GSSS 57
           M+ KD+F +E R  +PM     ++SS WQF+  NL N ++    TGNP  V     G SS
Sbjct: 1   MNGKDEFEVENRTSDPM-----SISSAWQFAAPNLTNESVGFDSTGNPSVVSNGDLGVSS 55

Query: 58  CSSAPMVDSFNQTIWDHPTNSQSLGYCN-IDAQHNASSSNALGIRKGSSASLRSCID-RP 115
           C S  M + F   + +H T SQ+ G+C   + Q++  +SN   +      SLRS  D R 
Sbjct: 56  CPSTSMSNLFTPALLNHHTESQNSGFCTTFNEQNSIVTSNTTLVDGEDLNSLRSNGDTRT 115

Query: 116 LDIGWNPASSMIKGGIFLPNAPGMFPQSLSQFPADSAFIERAARFSSFSGGNF-CDMMNT 174
           L + WN  +  +KG +F  N PG+FP +LSQ PADSAFIERAARFS F+ G F       
Sbjct: 116 LGMDWNQQNPWMKG-VFSGNVPGIFPPNLSQLPADSAFIERAARFSCFNNGVFGAPPAGP 174

Query: 175 FGTPEPTGLYSRGRGMMQGPQEVFAGNGLKSLSGGQSQKNEMNVAEVSKDASLSVEHGAS 234
           FG  +  G++S G G   G QEV + NG                  VSKD SL +E  A 
Sbjct: 175 FGISDSLGIHSGG-GF--GRQEVISRNG------------------VSKDVSLPMELEAE 213

Query: 235 NGSTLKNERKGESLVNSHGEAKQG-VGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAK 293
             S  KNE+  E    S   AKQG VG SG DSDEA FSGG  QDE   + GT  EPS +
Sbjct: 214 EKSPPKNEKDSEM---SQDRAKQGCVGESGNDSDEAGFSGG--QDEQCTMGGTMTEPSTE 268

Query: 294 GLSSKKRKRNGQDIEFDQAKGG-QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGS 352
           GL  KKRKR  Q++   Q K   Q   E AK+   NQ+KG   PSST +K AGKQGKQ S
Sbjct: 269 GLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFNQQKGGQNPSSTTSKPAGKQGKQDS 328

Query: 353 QTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLD 412
           Q SD PKEEYIHVRARRGQATNSHSLAERVRREKISERM+ LQDLVPGCSKVTGKAVMLD
Sbjct: 329 QPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLD 388

Query: 413 EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVY 472
           EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELL K+ +QS+AGP S  GF PDMP+ Y
Sbjct: 389 EIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEFIQSKAGP-SLFGFPPDMPVPY 447

Query: 473 PPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQM 532
            P H S  GL+   LP MG+  D+LRR INSQLT + GGFKEP Q+ N W +ELHNVV M
Sbjct: 448 LPQHSSHHGLIPPCLPTMGSSPDLLRRAINSQLTSLVGGFKEPVQLPNRWGNELHNVVPM 507

Query: 533 SYGTSAPSDSQDVNGSTPPDHMKVEL 558
           ++  SAPS  QDV+GS P  + + EL
Sbjct: 508 NFDVSAPSSGQDVDGSNPQCNTRAEL 533

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	558
TAIR|locus:2205420	486	AT1G68920 [Arabidopsis thalian	0.514	0.590	0.563	1.1e-91
UNIPROTKB|Q69JJ6	428	OSJNBa0026C08.22 "TA1 protein-	0.476	0.621	0.559	1.8e-69
UNIPROTKB|Q5VR96	437	P0038C05.31-1 "Os06g0275600 pr	0.496	0.633	0.514	6.9e-63
TAIR|locus:2028804	390	CIB5 "AT1G26260" [Arabidopsis	0.433	0.620	0.472	8.1e-57
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.543	0.629	0.460	8.9e-54
UNIPROTKB|Q6ZCV8	365	P0028A08.20 "Os08g0487700 prot	0.514	0.786	0.441	1.1e-50
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.469	0.574	0.439	1.6e-49
UNIPROTKB|Q84LH4	327	OSJNBb0011H13.2 "Putative Heli	0.446	0.761	0.439	7.7e-48
TAIR|locus:2201906	366	AT1G10120 "AT1G10120" [Arabido	0.270	0.412	0.607	2.4e-44
UNIPROTKB|Q84QW1	405	OJ1191_A10.109 "BHLH transcrip	0.573	0.790	0.386	5.7e-43

TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
 Identities = 178/316 (56%), Positives = 209/316 (66%)

Query:   246 ESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQ 305
             ES V S  +AK  V  SG  S++ + SGG GQ         G E S+   ++KKRKRNGQ
Sbjct:   195 ESTVRSSEQAKPNVPGSGNVSEDTQSSGGNGQK--------GRETSS---NTKKRKRNGQ 243

Query:   306 -DIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKS-AGKQGKQGSQTSDPPKEEYI 363
              + E  Q+   Q S E   +N + +R  +  P+S G KS +GKQ  QG Q+SDPPK+ YI
Sbjct:   244 KNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQ--QGKQSSDPPKDGYI 301

Query:   364 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQR 423
             HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGC+KVTGKAVMLDEIINYVQSLQR
Sbjct:   302 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQR 361

Query:   424 QVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLM 483
             QVEFLSMKLATVNP++DFN+E LLAKD LQ RAG SST  F P+M + YPP+     G M
Sbjct:   362 QVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPPNMSMAYPPLPH---GFM 418

Query:   484 HGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYGTS--APSD 541
                L  +G       RTI S L+PM GGFK   Q  N WE +L NV+ ++YG     P  
Sbjct:   419 QQTLSSIG-------RTITSPLSPMNGGFKR--QETNGWEGDLQNVIHINYGAGDVTPDP 469

Query:   542 SQDVNGSTPPDHMKVE 557
                   S P  +MKVE
Sbjct:   470 QAAATASLPAANMKVE 485

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 159/284 (55%), Positives = 198/284 (69%)

Query:   266 SDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDN 325
             +D+AE   G G DE  + E  GG+ S+KG  SKKR+R  + +  DQ        ++A ++
Sbjct:   150 NDKAEEFAGNGHDEVPSSEVAGGDCSSKGSDSKKRRRPNEVMGTDQVHSSNLPSDSANES 209

Query:   326 TENQRKGDHK-PSST-GNKSAGKQGKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVR 383
               ++ KG+   P++T G KS GK  K+   TS+  KEEYIHVRARRGQATNSHSLAER+R
Sbjct:   210 VHSKDKGEESSPATTNGGKSKGKGAKE---TSESQKEEYIHVRARRGQATNSHSLAERLR 266

Query:   384 REKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNI 443
             REKISERMK LQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLD NI
Sbjct:   267 REKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDLNI 326

Query:   444 EELLAKDVLQSRAGPSSTLGFSPDMPLVYPPVHQSQAGLMHGALPGMGNPSDILRRTINS 503
             E LL+KD+L+    PSS++GFSP+M  ++P +  SQ GL+HG   GM NP D+ RR I +
Sbjct:   327 EGLLSKDLLRFPGVPSSSIGFSPEM--MHPQLQLSQPGLIHGGTAGMANP-DVFRRIIQA 383

Query:   504 QLTPMTGGFKEPSQVANVWEDELHNVVQMSYGTSAPS-DSQDVN 546
             QL     G K+ SQ+ +       +V QM+Y    PS  SQD++
Sbjct:   384 QL-----GAKDGSQMPHSLNGSFSDVSQMAY----PSLGSQDLS 418

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 155/301 (51%), Positives = 194/301 (64%)

Query:   242 ERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPSAKGLSSKKRK 301
             E +G   V+  GE +QG     G++  A  S       P    G G +   +   SKKRK
Sbjct:   142 EIEGSKNVSQTGEKQQG----DGETTHAVDSSSKELSMPGRNGGAGHDEGTRVSCSKKRK 197

Query:   302 RNGQDIEFDQAKGGQ---SSGEAAKDNTENQRKGDHKPSSTGN-KSAGKQGKQGSQTSDP 357
             R+GQD     A+GG+   + G A K+  E+  KG+ K SS  + KS+GKQ K  + +   
Sbjct:   198 RSGQDGGVKHAEGGEQLATVGSAQKN--EDDEKGEPKRSSVASGKSSGKQIKDNAGS--- 252

Query:   358 PKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINY 417
             PKE+YIHVRARRGQATNSHSLAERVRREKISERMK+LQDLVPGCSKVTGKAVMLDEIINY
Sbjct:   253 PKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINY 312

Query:   418 VQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGP-SSTLGFSPDM--PLVYPP 474
             VQSLQRQVEFLSMKLA+VNP LDFNIE +L+KD+ Q R    SS  GF PD+  P ++PP
Sbjct:   313 VQSLQRQVEFLSMKLASVNPTLDFNIERILSKDIFQCRGTTASSAFGFFPDIVHPRLHPP 372

Query:   475 VHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPS-QVANVWEDELHNVVQMS 533
              + +Q G+     P + NP+D   R I++ L      FKEP  Q+ N    E  +V++M 
Sbjct:   373 KY-TQVGM-----PSIVNPTDAFGRVIHAPLGT-NSAFKEPKHQMPNNLNGEFQDVIEMP 425

Query:   534 Y 534
             +
Sbjct:   426 F 426

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 8.1e-57, Sum P(3) = 8.1e-57
 Identities = 128/271 (47%), Positives = 162/271 (59%)

Query:   245 GESLVNSHGEAKQGVGASGG-DSDEAEFSGGGGQDEPSAVEGTG--GEPSAKGLSSKKRK 301
             GE ++N   ++  GV  S G    + +   G   D     + +    E S   +S   + 
Sbjct:    96 GEMMMNQQ-QSSLGVPDSTGLFLQDTQIPSGSKLDNGPLTDASKLVKERSINNVSEDSQS 154

Query:   302 RNGQDIEFDQAKGGQSS------------GEAAKDNTENQRKGDHKPSSTGNKSAGKQGK 349
               G     D AK GQ+S            G+  ++  + ++K +  P+S  NK+  ++  
Sbjct:   155 SGGNG--HDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEK-- 210

Query:   350 QGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAV 409
                Q SD  K+ YIH+RARRGQATNSHSLAERVRREKISERMKFLQDLVPGC KVTGKAV
Sbjct:   211 ---QPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAV 267

Query:   410 MLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMP 469
             MLDEIINYVQSLQ Q+EFLSMKL+ VNP LDFN+E LLAKD LQS A P+    F  +M 
Sbjct:   268 MLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSA-PT----FPHNMS 322

Query:   470 LVYPPV-HQSQAGLMHGALPGMGNPSDILRR 499
             ++YPPV + SQ G M   +  M   S  L+R
Sbjct:   323 MLYPPVSYLSQTGFMQPNISSMSLLSGGLKR 353

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0048513 "organ development" evidence=RCA

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 152/330 (46%), Positives = 186/330 (56%)

Query:   244 KGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTG-GEPSAKGLSSKKRKR 302
             K   L N+  E+     A GG     + +  G   +  A  G G G+ S    S+ K   
Sbjct:   164 KEMELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRKA-SGKGKGKDSPMSTSAAKEDS 222

Query:   303 NGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEY 362
             +G+     + K  + S  AA+   EN  KG    S++ N    KQGK  S     P ++Y
Sbjct:   223 SGK-----RCKSTEESNAAAE---ENSGKGKAAQSNSENGGGKKQGKDSSSKPPEPPKDY 274

Query:   363 IHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQ 422
             IHVRARRG+AT+SHSLAERVRREKIS+RMK LQDLVPGC+KV GKAVMLDEIINYVQSLQ
Sbjct:   275 IHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQ 334

Query:   423 RQVEFLSMKLATVNPRLDFN-IEELLAKDVLQSRAGPSSTLGF---SPDMPLVYPPVHQS 478
             RQVEFLSMKLATVNP+LDFN +  LLAKD+ QS   P  +  F   +   PL Y  ++Q 
Sbjct:   335 RQVEFLSMKLATVNPQLDFNNLPNLLAKDMHQS-CSPLQSSHFPLETSGAPLPY--INQP 391

Query:   479 QAG--LMHGALPGMGN-----PSD-ILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVV 530
             Q G  L  G   GM N     P D    R + S    + G     SQV   W+D+L +VV
Sbjct:   392 QQGNPLGCGLTNGMDNQGSMHPLDPAFCRPMGSHHPFLNGVSDAASQVGAFWQDDLQSVV 451

Query:   531 QMSYGTSAP--SDSQDVNGSTPPDHMKVEL 558
             QM  G S    + S   NGS    HMK+EL
Sbjct:   452 QMDMGQSQEIATSSNSYNGSLQTVHMKMEL 481

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6ZCV8 P0028A08.20 "Os08g0487700 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 139/315 (44%), Positives = 178/315 (56%)

Query:   259 VGASGGDSDEAEFSGGGGQDEPSAVEG--------TGG--EPSAKGLSSKKRKRNGQDIE 308
             V  S G +  A  SG G    P+AV G        +GG  EP+    S  K++R+ +   
Sbjct:    60 VSPSTGAATAA--SGAGFLLPPAAVRGGFGSFPVNSGGIVEPAGDCSSESKKRRSDEIAG 117

Query:   309 FDQAKGGQS---SG---EAAKDNTENQRKGDHKPSSTGNKSAGKQGKQGSQTSDPPKEEY 362
              D A    +   SG   E +KD    +  G    ++ G KS GK  K   +     KE Y
Sbjct:   118 TDHANASNALADSGNETECSKD-VNGEVIGPPATAAAGGKSKGKGAKDAGEAQ---KEGY 173

Query:   363 IHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQ 422
              HVRAR+GQATN+HSLAER+RREKISERMK LQDLVPGCSKVTGKA+MLDEIINYVQSLQ
Sbjct:   174 SHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSLQ 233

Query:   423 RQVEFLSMKLATVNPRLDFNIEELL--AKDVLQSRAGPSST-LGFSPDMPLVYPPVHQSQ 479
             RQVEFLSMKL+ VNPR+D +IE L+  +KDVL+    PSS  +GFS    ++ P +  S+
Sbjct:   234 RQVEFLSMKLSAVNPRIDLDIESLVNNSKDVLRFPGQPSSAPMGFSFSTEMM-PGLQLSR 292

Query:   480 AGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQMSYGTSAP 539
              G++ G + GM NP D+    +  Q     G F+EP Q+    +    N  QM Y     
Sbjct:   293 PGILQGGVHGMINP-DVFTSLMQKQQQNDKGAFREP-QMHQTLDGSFRNTAQMPYPQVMS 350

Query:   540 SDSQDVNGSTPPDHM 554
             S+   +       HM
Sbjct:   351 SEELSIRQDQDGFHM 365

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 126/287 (43%), Positives = 160/287 (55%)

Query:   279 EPSAVEGTGGEPSAKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSS 338
             +P A     GE S  G  S+KRK           K  Q+S  A   + E + K D  P  
Sbjct:   188 KPLASHVPAGESS--GELSRKRK----------TKSKQNSPSAVSSSKEIEEKEDSDP-- 233

Query:   339 TGNKSAGKQGKQGSQT-SDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDL 397
                K   K  + G +T S  P ++YIHVRARRGQAT+SHSLAERVRREKISERMK LQDL
Sbjct:   234 ---KRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDL 290

Query:   398 VPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAG 457
             VPGC+KVTGKA+MLDEIINYVQSLQRQVEFLSMKL++VN RLDFN++ LL+KD+  S   
Sbjct:   291 VPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSNN 350

Query:   458 ---PSSTLGFSPDMPLVYPPVHQSQAGLMHG-ALPGMGNPSDILR-RTINSQLTPMTGGF 512
                    L        +    H     L    +   + NP +    R+  S L P    F
Sbjct:   351 LMHHQQVLQLDSSAETLLGDHHNKNLQLNPDISSNNVINPLETSETRSFISHL-PTLAHF 409

Query:   513 KEP-SQVANVWEDELHNVVQMSYGTSAPSDSQDVNGSTPPDHMKVEL 558
              +  SQ +   ED+LH+++ M +  +   +    + +  P HMK EL
Sbjct:   410 TDSISQYSTFSEDDLHSIIHMGFAQNRLQELNQGSSNQVPSHMKAEL 456

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q84LH4 OSJNBb0011H13.2 "Putative Helix-loop-helix DNA-binding domain containing protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 479 (173.7 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 117/266 (43%), Positives = 153/266 (57%)

Query:   296 SSKKRKRNGQDIEFDQAKGGQSSG--EAAKDNTENQRKGDHKPSSTGN-KSAGK-QGKQG 351
             SS  ++R G D          SS         TE   + +       N KS  K Q K+ 
Sbjct:    74 SSGAKRRKGIDDHIALLNPSASSRIQNVGDQQTEVSSQQERISMEEDNQKSCSKMQSKED 133

Query:   352 SQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVML 411
             S   D  KE+Y+HVRA+RGQATNSHSLAER+RR+KISERMK LQDLVPGCSK+TGKAVML
Sbjct:   134 SSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVML 193

Query:   412 DEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSPDMPLV 471
             DEIINYVQSLQRQVEFLSMKLATVNP L F+IE++L+K ++ S+    +  G  P    +
Sbjct:   194 DEIINYVQSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRHLAFYGVDPGSSAL 253

Query:   472 YPPVHQSQAGLMHGALPGMGNPSDILRRTINSQLTPMTGGFKEPSQVANVWEDELHNVVQ 531
                 H +Q  +    L  + NP+D+L+ T    ++ +       +Q+  +WE  L N+  
Sbjct:   254 V--AHFNQGIMQPEMLCNVSNPADVLQGTTIQDISTV-------NQIPAMWEG-LQNIPH 303

Query:   532 MSYGTSAPSDSQDVNGSTPPDHMKVE 557
             ++Y           N S     MK+E
Sbjct:   304 LNYNPGGAMAEGSTNNS---GSMKIE 326

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2201906 AT1G10120 "AT1G10120" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 93/153 (60%), Positives = 120/153 (78%)

Query:   316 QSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQ--GKQGSQTSDPPKEEYIHVRARRGQAT 373
             Q + +A ++  E+ ++G+ +          K+   K+ SQ+ + PKE YIH+RARRGQAT
Sbjct:   155 QWNKKAVEEFQEDPQRGNDQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQAT 214

Query:   374 NSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLA 433
             NSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYVQSLQ+QVEFLSMKLA
Sbjct:   215 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLA 274

Query:   434 TVNPRLDFNIEELLAKDVLQSRAGPSSTLGFSP 466
             TVNP ++ +I+ +LAKD+LQSR   + TLG +P
Sbjct:   275 TVNPEINIDIDRILAKDLLQSRDRNTPTLGLNP 307

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q84QW1 OJ1191_A10.109 "BHLH transcription factor(GBOF-1)-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 133/344 (38%), Positives = 180/344 (52%)

Query:   234 SNGSTLKNERKGESLVNSHGEAKQGVG--ASGGDSDEAEFSGGGGQD-EPSAVEGTGGEP 290
             +NG     +R G +     G      G  A GG  + +  S       + +A      + 
Sbjct:    65 NNGGGGVGQRYGGAGAGLFGMPPPAPGDFAGGGSREASSVSDPASSAMKDAAANAKKRKS 124

Query:   291 SAKGLSSKKRKRN----GQDIEFDQAKGGQSSGEAAKD-NTENQRKGDHKPSSTGNKSAG 345
             +A   ++ K K      G++ E D  +    +GE       + ++ G       G     
Sbjct:   125 TAAAAAAAKGKGKEPPVGEEKESDGKRCKTGNGEKESSVKPKAEQAGSDSSVEDGGGGGQ 184

Query:   346 KQGK-QGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKV 404
             KQGK + ++  +PPK+ Y+HVRARRGQAT+SHSLAERVRRE+IS+RMK LQDLVPGC+KV
Sbjct:   185 KQGKGKNAKPVEPPKD-YVHVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKV 243

Query:   405 TGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDF-NIEELLAKDVLQSRAGPSSTLG 463
              GKA+MLDEIINYVQSLQRQVEFLSMKLATVNP LDF N+  LL KD+ Q+  GPS++  
Sbjct:   244 IGKALMLDEIINYVQSLQRQVEFLSMKLATVNP-LDFSNLPTLLQKDMFQA-CGPSASSV 301

Query:   464 FSPDMP-LVYPPVHQSQAGLMHGALPGMG-----NPSDI-LRRTINS-QLTPMTGGFKEP 515
             FS +     +    Q        A   M      N  D+ L +  N+ Q     G     
Sbjct:   302 FSLESSNSAFRFAEQGDV-FQQFAQNSMESQCTLNQLDLALSQATNAAQYAFQDGTAGAN 360

Query:   516 SQVANVWEDELHNVVQMSYGTSAPS--DSQDVNGSTPPDHMKVE 557
              Q  N WED+L +V  +  G S  +   + + +G     HMK+E
Sbjct:   361 LQQRNFWEDDLQSVFHIENGQSQENGVSAPNFHGQQQAGHMKME 404

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAA9	BH049_ARATH	No assigned EC number	0.5064	0.8154	0.9362	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00101294 hypothetical protein (562 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	558
smart00353	53	smart00353, HLH, helix loop helix domain	1e-11
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	2e-11
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	2e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.003

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 377 SLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVE 426
           +  ER RR KI+E    L+ L+P      K++ KA +L   I Y++SLQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLS-KAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 369 RGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTG--KAVMLDEIINYVQSLQRQVE 426
           R     +H+L ER RRE+I++    L+ L+P         KA +L + ++Y++SLQ  ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCS--KVTGKAVMLDEIINYVQSLQ 422
           +H+  ER RR++I++  + L++L+P     K++ KA +L   I Y++ LQ
Sbjct: 4   AHNERERRRRDRINDAFEELRELLPTPPNKKLS-KAEILRLAIEYIKHLQ 52

Length = 52

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 232 GASNGSTLKNERKGESLVNSHGEAKQGVGASGGDSDEAEFSGGGGQDEPSAVEGTGGEPS 291
           G    S +   RKGE L+ +  EA+ G  A+   +  A  +        +A      +P+
Sbjct: 39  GIKGTSGM---RKGE-LIAAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPA 94

Query: 292 AKGLSSKKRKRNGQDIEFDQAKGGQSSGEAAKDNTENQRKGDHKPSSTGNKSAGKQGKQG 351
           A+  ++K             A    S+ EAA+      R+   +  +    +A K G+ G
Sbjct: 95  AEAAAAKAEAAPAARAAAAAAAEAASAPEAAQ-----ARERRERGEAARRGAARKAGEGG 149

Query: 352 SQTS--------DPPKEEYIHVRARRGQATNSHSLAERVRREKISER 390
            Q +        +  +EE    R RRG   +  + AER  R +  ER
Sbjct: 150 EQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREER 196

Length = 672

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	558
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.3
smart00353	53	HLH helix loop helix domain.	99.25
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.21
KOG1318	411	consensus Helix loop helix transcription factor EB	99.2
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.83
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.28
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.06
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	97.65
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.51
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.35
PLN03217	93	transcription factor ATBS1; Provisional	97.34
KOG0561	373	consensus bHLH transcription factor [Transcription	96.8
KOG4029	228	consensus Transcription factor HAND2/Transcription	96.37
KOG3910	632	consensus Helix loop helix transcription factor [T	96.12
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	87.12

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.30  E-value=2.4e-12  Score=99.33  Aligned_cols=53  Identities=36%  Similarity=0.615  Sum_probs=48.5

Q ss_pred             cccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHH
Q 008631          373 TNSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVE  426 (558)
Q Consensus       373 t~~HslaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe  426 (558)
                      ...|+..||+||++||+.|..|+++||.+   .| .+|++||..||+||+.|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence            34799999999999999999999999999   45 5999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.25  E-value=1.2e-11  Score=94.14  Aligned_cols=49  Identities=39%  Similarity=0.576  Sum_probs=44.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHH
Q 008631          377 SLAERVRREKISERMKFLQDLVPG---CSKVTGKAVMLDEIINYVQSLQRQVE  426 (558)
Q Consensus       377 slaERrRReKINer~kaLq~LVP~---~~K~tDKASILdeAI~YIK~LQ~QVe  426 (558)
                      ++.||+||++||+.|..|+.|||.   ..|. +|++||++||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~-~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKL-SKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999996   4464 999999999999999999986

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.21  E-value=1.7e-11  Score=94.87  Aligned_cols=48  Identities=38%  Similarity=0.708  Sum_probs=44.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHH
Q 008631          375 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ  422 (558)
Q Consensus       375 ~HslaERrRReKINer~kaLq~LVP~~----~K~tDKASILdeAI~YIK~LQ  422 (558)
                      .|+..||+||++||+.|..|+.|||.+    ....+|++||+.||+||+.||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            699999999999999999999999998    233599999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.20  E-value=1.9e-11  Score=129.17  Aligned_cols=84  Identities=31%  Similarity=0.517  Sum_probs=62.5

Q ss_pred             cccccccHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHH------HHhhhhhcCCCccc
Q 008631          371 QATNSHSLAERVRREKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEF------LSMKLATVNPRLDF  441 (558)
Q Consensus       371 qat~~HslaERrRReKINer~kaLq~LVP~~~K---~tDKASILdeAI~YIK~LQ~QVe~------Le~k~aavnp~l~~  441 (558)
                      ++.+.|+++|||||++||++|++|..|||.|+-   .++|.+||..+++||+.||+..+.      ++.+++..+..|-.
T Consensus       232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~  311 (411)
T KOG1318|consen  232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELAL  311 (411)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHH
Confidence            344699999999999999999999999999942   237999999999999999975542      22344555555555


Q ss_pred             hhhhhhhHHhhhc
Q 008631          442 NIEELLAKDVLQS  454 (558)
Q Consensus       442 ~ie~L~~kd~~q~  454 (558)
                      .+++|....-.+.
T Consensus       312 rieeLk~~~~~~~  324 (411)
T KOG1318|consen  312 RIEELKSEAGRHG  324 (411)
T ss_pred             HHHHHHHHHHHhc
Confidence            5666644444433

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.83  E-value=2.1e-09  Score=104.42  Aligned_cols=65  Identities=31%  Similarity=0.518  Sum_probs=58.6

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCCCCC------CCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCc
Q 008631          375 SHSLAERVRREKISERMKFLQDLVPGCSKV------TGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRL  439 (558)
Q Consensus       375 ~HslaERrRReKINer~kaLq~LVP~~~K~------tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp~l  439 (558)
                      .|-.+||+||+.||..+..||+|||.|...      +.||.||..+|+||.+|..++.+-+.++++++.++
T Consensus        65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v  135 (229)
T KOG1319|consen   65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV  135 (229)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999987432      36999999999999999999999999999888765

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.28  E-value=3.5e-07  Score=91.95  Aligned_cols=52  Identities=33%  Similarity=0.470  Sum_probs=45.5

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCCCCC-------CCchhhHHHHHHHHHHHHHHHH
Q 008631          375 SHSLAERVRREKISERMKFLQDLVPGCSKV-------TGKAVMLDEIINYVQSLQRQVE  426 (558)
Q Consensus       375 ~HslaERrRReKINer~kaLq~LVP~~~K~-------tDKASILdeAI~YIK~LQ~QVe  426 (558)
                      .|.+.|||||.|||+-+.+|++|||.+.|+       .+||.||+-|++|+|.||.+..
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~   93 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ   93 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence            588999999999999999999999966432       2799999999999999997543

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.06  E-value=3.6e-06  Score=95.85  Aligned_cols=52  Identities=19%  Similarity=0.371  Sum_probs=47.3

Q ss_pred             cccccHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCchhhHHHHHHHHHHHHHH
Q 008631          373 TNSHSLAERVRREKISERMKFLQDLVPGCS---KVTGKAVMLDEIINYVQSLQRQ  424 (558)
Q Consensus       373 t~~HslaERrRReKINer~kaLq~LVP~~~---K~tDKASILdeAI~YIK~LQ~Q  424 (558)
                      .+.|+.+|||||+++|..|.+|.+|||.|.   .+.||-+||.+||..||.+.++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            357999999999999999999999999997   3349999999999999999875

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=97.65  E-value=4.4e-05  Score=87.89  Aligned_cols=65  Identities=28%  Similarity=0.480  Sum_probs=54.9

Q ss_pred             ccccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008631          372 ATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  436 (558)
Q Consensus       372 at~~HslaERrRReKINer~kaLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavn  436 (558)
                      ....|+++|||-|-.||+||.+|++|||+..-+..|..+|..||+||++||...+.+....+.+.
T Consensus       276 kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  276 KRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             ccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            35679999999999999999999999998765458999999999999999987776665544443

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.51  E-value=0.00018  Score=72.19  Aligned_cols=58  Identities=26%  Similarity=0.347  Sum_probs=47.7

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCC--chhhHHHHHHHHHHHHHHHHHHHhh
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGCSKVTG--KAVMLDEIINYVQSLQRQVEFLSMK  431 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~~K~tD--KASILdeAI~YIK~LQ~QVe~Le~k  431 (558)
                      ..|+.-||+||..|.+.|..|+++||....-+.  .++||+.|+.||+.|+.+....+..
T Consensus        61 ~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~  120 (232)
T KOG2483|consen   61 AHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQD  120 (232)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHH
Confidence            479999999999999999999999996543222  5899999999999999766544433

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.35  E-value=0.00036  Score=70.99  Aligned_cols=56  Identities=21%  Similarity=0.282  Sum_probs=48.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 008631          376 HSLAERVRREKISERMKFLQD-LVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMK  431 (558)
Q Consensus       376 HslaERrRReKINer~kaLq~-LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k  431 (558)
                      --+.||||=.|+||-|.+|++ -+++-+...-|..||..||+||..||.-++.+...
T Consensus       122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~  178 (284)
T KOG3960|consen  122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA  178 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            348999999999999999987 67787776689999999999999999888776654

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.34  E-value=0.00055  Score=60.02  Aligned_cols=59  Identities=32%  Similarity=0.524  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCC------CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCcc
Q 008631          381 RVRREKISERMKFLQDLVPGC------SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLD  440 (558)
Q Consensus       381 RrRReKINer~kaLq~LVP~~------~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp~l~  440 (558)
                      |---+.|+|-+..||.|+|..      .|. .-+-+|+||.+||+.|+++|..|++.+..+-...+
T Consensus        16 risddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t~~   80 (93)
T PLN03217         16 RISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELLANSD   80 (93)
T ss_pred             CCCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            444578999999999999964      233 56679999999999999999999999886654443

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=96.80  E-value=0.00064  Score=70.83  Aligned_cols=50  Identities=26%  Similarity=0.431  Sum_probs=44.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCC--CCCCCCchhhHHHHHHHHHHHHHHH
Q 008631          375 SHSLAERVRREKISERMKFLQDLVPG--CSKVTGKAVMLDEIINYVQSLQRQV  425 (558)
Q Consensus       375 ~HslaERrRReKINer~kaLq~LVP~--~~K~tDKASILdeAI~YIK~LQ~QV  425 (558)
                      .-+.-||||=.-||..|..|+.|+|.  ..|+ .||.||+.+.+||..|+.+.
T Consensus        63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~K  114 (373)
T KOG0561|consen   63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHK  114 (373)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcc
Confidence            35677999999999999999999996  4676 89999999999999998654

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=96.37  E-value=0.0032  Score=61.90  Aligned_cols=57  Identities=23%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 008631          376 HSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKL  432 (558)
Q Consensus       376 HslaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~  432 (558)
                      ++..||.|=.-+|..|..||.+||..   .|+..|..+|..||.||++|+.-++.-+..+
T Consensus       113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            66679999999999999999999842   3445899999999999999998877666544

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=96.12  E-value=0.012  Score=64.92  Aligned_cols=54  Identities=26%  Similarity=0.306  Sum_probs=45.2

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCC---CCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 008631          375 SHSLAERVRREKISERMKFLQDLVP---GCSKVTGKAVMLDEIINYVQSLQRQVEFL  428 (558)
Q Consensus       375 ~HslaERrRReKINer~kaLq~LVP---~~~K~tDKASILdeAI~YIK~LQ~QVe~L  428 (558)
                      ..+..||.|=..|||.||+|.++.=   ...|---|.-||-.||.-|-.|++||++-
T Consensus       529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER  585 (632)
T KOG3910|consen  529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER  585 (632)
T ss_pred             hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence            4788999999999999999999864   23332248899999999999999999874

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=87.12  E-value=0.35  Score=46.88  Aligned_cols=47  Identities=23%  Similarity=0.380  Sum_probs=39.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHH
Q 008631          375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQ  422 (558)
Q Consensus       375 ~HslaERrRReKINer~kaLq~LVP~~--~K~tDKASILdeAI~YIK~LQ  422 (558)
                      .|++.||+|-..+|+.|.+||.++|..  .|+ .|.--|.-|-.||-+|=
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~  129 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLY  129 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhh
Confidence            699999999999999999999999964  565 67777888888887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	558
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	6e-19
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	2e-09
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	5e-08
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	8e-08
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1a0a_A	63	BHLH, protein (phosphate system positive regulator	7e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 80.5 bits (199), Expect = 6e-19
 Identities = 18/73 (24%), Positives = 38/73 (52%)

Query: 368 RRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 427
            RG+   +H+  E+  R  I++++  L+DLV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 428 LSMKLATVNPRLD 440
           L  +  ++   + 
Sbjct: 62  LKQENLSLRTAVH 74

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 366 RARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTG-----KAVMLDEIINYVQS 420
             RR      H+  ER RR+KI+  +  L  ++P  S  +      K  +L +  +Y+Q 
Sbjct: 3   EKRR----AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQE 58

Query: 421 LQRQVE 426
           L++   
Sbjct: 59  LRQSNH 64

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQ 424
            H+  ER RR+ I +    L+D VP     K + +A +LD+   Y+Q ++R+
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKAS-RAQILDKATEYIQYMRRK 55

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 352 SQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKV-TGKAVM 410
           +   +   +       +R      H+  ER RR+ I +    L+D VP        +A +
Sbjct: 1   NDDIEVESDA-----DKR----AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQI 51

Query: 411 LDEIINYVQSLQRQVEFLSMKL 432
           LD+   Y+Q ++R+       +
Sbjct: 52  LDKATEYIQYMRRKNHTHQQDI 73

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 12/87 (13%)

Query: 366 RARRGQATNSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQ 422
             +R     +H++ ER RR ++      L+D +P      K   K V+L +   Y+ S+Q
Sbjct: 4   NVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAP-KVVILKKATAYILSVQ 58

Query: 423 RQVEFLSMKLATVNPRLDFNIEELLAK 449
            + +    KL +    L    E+L  K
Sbjct: 59  AEEQ----KLISEEDLLRKRREQLKHK 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 5e-07
 Identities = 33/282 (11%), Positives = 75/282 (26%), Gaps = 97/282 (34%)

Query: 352 SQTSDP--PKEEYIHVRARRGQATNSHSLAER--VRREKISERMKFLQDLVP-------- 399
           ++   P      YI  R R     ++   A+    R +   +  + L +L P        
Sbjct: 100 TEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 400 --GCSKVTGKAVML----------------------------DEIINYVQSLQRQVE--F 427
             G     GK  +                             + ++  +Q L  Q++  +
Sbjct: 158 VLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 428 LSMKLATVNPRLDFNIEELLAKDVLQSRAGPSSTL------------GF---------SP 466
            S    + N +L  +  +   + +L+S+   +  L             F         + 
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 467 DMPLV---------YPPVHQSQAGLMHGALPGM-----GNPSDILRR---TINSQLTPMT 509
              +          +  +      L    +  +           L R   T N +   + 
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 510 GGFKEPSQVANVWE-------DELHNVVQMSYGTSAPSDSQD 544
                       W+       D+L  +++ S     P++ + 
Sbjct: 334 AESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 374 NSHSLAERVRREKISERMKFLQDLVPGCSK------VTGKAVMLDEIINYVQSLQRQVE 426
            SH  AE+ RR +++  +  L  L+P   K         KA  ++    Y++ LQ+   
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	558
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.64
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.61
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.48
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.48
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.48
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.46
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.42
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.41
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.36
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.29
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.17
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.9
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.8
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.8
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.76
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.58
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.17
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.47

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.64  E-value=1.6e-16  Score=140.94  Aligned_cols=88  Identities=30%  Similarity=0.423  Sum_probs=50.8

Q ss_pred             CccchhhhhccccccccccHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHhh----
Q 008631          359 KEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFLSMK----  431 (558)
Q Consensus       359 ke~~i~~RaRR~qat~~HslaERrRReKINer~kaLq~LVP~~~K---~tDKASILdeAI~YIK~LQ~QVe~Le~k----  431 (558)
                      .++..+.+++++++..+|+++||+||++||++|.+|++|||+|.+   ..+|++||++||+||++||.+++.|+..    
T Consensus        14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~   93 (118)
T 4ati_A           14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ   93 (118)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567788888888999999999999999999999999999863   2489999999999999999999999854    


Q ss_pred             --hhhcCCCccchhhhh
Q 008631          432 --LATVNPRLDFNIEEL  446 (558)
Q Consensus       432 --~aavnp~l~~~ie~L  446 (558)
                        +...+..|...|+.|
T Consensus        94 ~~l~~~n~~L~~riqeL  110 (118)
T 4ati_A           94 KKLEHANRHLLLRVQEL  110 (118)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence              344555565555554

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.61  E-value=2.9e-16  Score=131.13  Aligned_cols=65  Identities=25%  Similarity=0.376  Sum_probs=58.6

Q ss_pred             cccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008631          373 TNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP  437 (558)
Q Consensus       373 t~~HslaERrRReKINer~kaLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp  437 (558)
                      ...|+++||+||++||++|.+|++|||++....+||+||++||+||++||.+++.|+.+...+..
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~   71 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999998444599999999999999999999999998876543

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.48  E-value=1.5e-14  Score=119.14  Aligned_cols=57  Identities=21%  Similarity=0.416  Sum_probs=51.1

Q ss_pred             cccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 008631          373 TNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLS  429 (558)
Q Consensus       373 t~~HslaERrRReKINer~kaLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le  429 (558)
                      ..+|+++||+||++||++|.+|++|||.+....||++||+.||+||+.||.++.-|+
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            357999999999999999999999999865334999999999999999999987665

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.48  E-value=9.9e-15  Score=116.23  Aligned_cols=54  Identities=28%  Similarity=0.437  Sum_probs=48.5

Q ss_pred             ccccccHHHHHHHHHHHHHHHHHhhcCCCCCC-----CCCchhhHHHHHHHHHHHHHHH
Q 008631          372 ATNSHSLAERVRREKISERMKFLQDLVPGCSK-----VTGKAVMLDEIINYVQSLQRQV  425 (558)
Q Consensus       372 at~~HslaERrRReKINer~kaLq~LVP~~~K-----~tDKASILdeAI~YIK~LQ~QV  425 (558)
                      ....|+++||+||++||+.|.+|++|||.|..     ..+|++||++||+||+.||.++
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            34579999999999999999999999999872     2499999999999999999875

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.48  E-value=5.1e-15  Score=118.73  Aligned_cols=53  Identities=28%  Similarity=0.452  Sum_probs=47.4

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCCC------CCCchhhHHHHHHHHHHHHHHHH
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGCSK------VTGKAVMLDEIINYVQSLQRQVE  426 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~~K------~tDKASILdeAI~YIK~LQ~QVe  426 (558)
                      .+|+++||+||++||..|..|+.|||.|.+      ..+||+||+.||+||+.||++|+
T Consensus         4 ~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            579999999999999999999999997743      23699999999999999998764

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.46  E-value=9.2e-15  Score=120.65  Aligned_cols=53  Identities=30%  Similarity=0.495  Sum_probs=47.6

Q ss_pred             ccccccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCchhhHHHHHHHHHHHHH
Q 008631          370 GQATNSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQR  423 (558)
Q Consensus       370 ~qat~~HslaERrRReKINer~kaLq~LVP~~----~K~tDKASILdeAI~YIK~LQ~  423 (558)
                      .++...|+++||+||++||+.|.+|+.|||.|    .|+ |||+||+.||+||+.||.
T Consensus         7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence            34456899999999999999999999999988    565 999999999999999974

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.42  E-value=1.6e-13  Score=113.56  Aligned_cols=61  Identities=28%  Similarity=0.476  Sum_probs=56.3

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV  435 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aav  435 (558)
                      ..|+.+||+||.+||+.|..|++|||.+  .|+ +|++||..||+||+.||.+++.|+.++..+
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L   76 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999987  465 999999999999999999999999887654

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.41  E-value=2.1e-13  Score=113.28  Aligned_cols=62  Identities=27%  Similarity=0.473  Sum_probs=55.9

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  436 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavn  436 (558)
                      ..|+.+||+||++||+.|..|+++||.+  .|. +|++||..||+||+.||.+++.|+.+...+.
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~   67 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLK   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999985  665 9999999999999999999999988766543

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.36  E-value=6.2e-13  Score=112.67  Aligned_cols=59  Identities=27%  Similarity=0.404  Sum_probs=53.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLA  433 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~a  433 (558)
                      ..|+.+||+||++||+.|..|+++||.+   .|. +|++||..||+||+.|+.+.+.|.....
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~   69 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEED   69 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999986   465 9999999999999999999888776544

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.29  E-value=1.1e-12  Score=109.06  Aligned_cols=57  Identities=25%  Similarity=0.355  Sum_probs=49.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSM  430 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~  430 (558)
                      ..|+..||+||++||+.|..|+++||.+   .|...|+.||..||+||++||++|++++.
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3599999999999999999999999953   44336889999999999999999998764

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.17  E-value=3.7e-11  Score=100.41  Aligned_cols=60  Identities=18%  Similarity=0.223  Sum_probs=53.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008631          375 SHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV  435 (558)
Q Consensus       375 ~HslaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aav  435 (558)
                      .|+..||+||..||+.|..|+++||.+   .|. .|+.||..||+||+.||.+.+.|..+...+
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L   66 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQL   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999965   454 799999999999999999999888776543

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.90  E-value=9.8e-10  Score=109.89  Aligned_cols=53  Identities=21%  Similarity=0.403  Sum_probs=42.0

Q ss_pred             ccccccHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCchhhHHHHHHHHHHHHHHH
Q 008631          372 ATNSHSLAERVRREKISERMKFLQDLVP-GCSKVTGKAVMLDEIINYVQSLQRQV  425 (558)
Q Consensus       372 at~~HslaERrRReKINer~kaLq~LVP-~~~K~tDKASILdeAI~YIK~LQ~QV  425 (558)
                      +..+|+++||+||++||+.|.+|+.||| ...|+ ||++||..||.|||.|+...
T Consensus        12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhhc
Confidence            3457999999999999999999999999 45576 99999999999999998643

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.80  E-value=3.2e-09  Score=86.60  Aligned_cols=51  Identities=24%  Similarity=0.398  Sum_probs=46.0

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 008631          375 SHSLAERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVE  426 (558)
Q Consensus       375 ~HslaERrRReKINer~kaLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe  426 (558)
                      .|+..||+|+..||+.|..|+++||..  .|+ .|..||..||+||+.||..++
T Consensus        15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence            499999999999999999999999964  454 899999999999999998653

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.80  E-value=1.8e-09  Score=109.42  Aligned_cols=54  Identities=28%  Similarity=0.399  Sum_probs=48.0

Q ss_pred             ccccccccHHHHHHHHHHHHHHHHHhhcCC----CCCCCCCchhhHHHHHHHHHHHHHH
Q 008631          370 GQATNSHSLAERVRREKISERMKFLQDLVP----GCSKVTGKAVMLDEIINYVQSLQRQ  424 (558)
Q Consensus       370 ~qat~~HslaERrRReKINer~kaLq~LVP----~~~K~tDKASILdeAI~YIK~LQ~Q  424 (558)
                      +++.++|+.+||+||+|||+.|.+|+.|||    ...|+ ||++||..||.|||.|+..
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence            344568999999999999999999999999    55676 9999999999999999843

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.76  E-value=7.2e-09  Score=82.54  Aligned_cols=52  Identities=23%  Similarity=0.280  Sum_probs=46.0

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhcCCCCC--CCCCchhhHHHHHHHHHHHHHHHH
Q 008631          375 SHSLAERVRREKISERMKFLQDLVPGCS--KVTGKAVMLDEIINYVQSLQRQVE  426 (558)
Q Consensus       375 ~HslaERrRReKINer~kaLq~LVP~~~--K~tDKASILdeAI~YIK~LQ~QVe  426 (558)
                      .|+..||+|+..||+.|..|+++||...  ++..|..+|..||+||+.||..++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            4889999999999999999999999652  334899999999999999998764

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.58  E-value=4.3e-08  Score=83.23  Aligned_cols=64  Identities=30%  Similarity=0.446  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHH------hhhhhcCCCccchhhhhh
Q 008631          384 REKISERMKFLQDLVPGCSK---VTGKAVMLDEIINYVQSLQRQVEFLS------MKLATVNPRLDFNIEELL  447 (558)
Q Consensus       384 ReKINer~kaLq~LVP~~~K---~tDKASILdeAI~YIK~LQ~QVe~Le------~k~aavnp~l~~~ie~L~  447 (558)
                      |..||++|++|..|||.++.   ..+|++||..||+||+.||..++.+.      .+++..|.++.+.+.+|.
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE   76 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELE   76 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            88999999999999998742   23899999999999999998666554      334556666766666664

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.17  E-value=4.7e-07  Score=74.39  Aligned_cols=46  Identities=22%  Similarity=0.421  Sum_probs=40.5

Q ss_pred             cHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHH
Q 008631          377 SLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQR  423 (558)
Q Consensus       377 slaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~  423 (558)
                      +..||+|+..||+.|..||++||..   .|+ .|..+|..||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence            3568999999999999999999865   454 899999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.47  E-value=0.00017  Score=62.83  Aligned_cols=48  Identities=23%  Similarity=0.346  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHH
Q 008631          380 ERVRREKISERMKFLQDLVPGC--SKVTGKAVMLDEIINYVQSLQRQVEF  427 (558)
Q Consensus       380 ERrRReKINer~kaLq~LVP~~--~K~tDKASILdeAI~YIK~LQ~QVe~  427 (558)
                      ||.|=..||+-|..||.+||..  +|+..|..+|..||+||+.||..++.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            5778888999999999999964  33348999999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	558
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	2e-16
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	7e-16
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	9e-15
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	1e-13
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	3e-13
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	3e-12
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	5e-12
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	8e-12

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 384 REKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFN 442
           R  I++++  L+DLV G      K+ +L + I+Y++ LQ+    L  +   +      N
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKN 59

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (172), Expect = 7e-16
 Identities = 18/73 (24%), Positives = 38/73 (52%)

Query: 368 RRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEF 427
            RG+   +H+  E+  R  I++++  L+DLV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 428 LSMKLATVNPRLD 440
           L  +  ++   + 
Sbjct: 62  LKQENLSLRTAVH 74

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 9e-15
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 364 HVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSK--VTGKAVMLDEIINYVQSL 421
           H+  +R     +H++ ER RR ++      L+D +P         K V+L +   Y+ S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 422 QRQVEFLSMKLATVNPRLDFNIEEL 446
           Q + + L  +   +  R +    +L
Sbjct: 58  QAEEQKLISEEDLLRKRREQLKHKL 82

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.4 bits (154), Expect = 1e-13
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCSKVTG------KAVMLDEIINYVQSLQRQVE 426
           SH  AE+ RR +++  +  L  L+P   K         KA  ++    Y++ LQ+   
Sbjct: 5   SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.6 bits (152), Expect = 3e-13
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCS-KVTGKAVMLDEIINYVQSLQRQVE 426
           + ++ ER R  K++E  + L+        +   K  +L   I Y++ LQ  + 
Sbjct: 15  AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 3e-12
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGC-SKVTGKAVMLDEIINYVQSLQRQVEFLSMKL 432
            H+  ER RR+ I +    L+D VP    +   +A +LD+   Y+Q ++R+       +
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (143), Expect = 5e-12
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 374 NSHSLAERVRREKISERMKFLQDLVPGCSKVTG-----KAVMLDEIINYVQSLQRQVE 426
             H+  ER RR+KI+  +  L  ++P  S  +      K  +L +  +Y+Q L++   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 8e-12
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 375 SHSLAERVRREKISERMKFLQDLVPGCSKV--TGKAVMLDEIINYVQSLQRQVEFLSMKL 432
           +H+  E+ RR  +   ++ L+ LVP            +L +   +++ L+        ++
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 433 ATVNPRLDFNIEELLAK 449
             +          L  +
Sbjct: 64  DQLQRE----QRHLKRQ 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	558
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.39
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.37
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.35
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.29

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.3e-15  Score=120.98  Aligned_cols=63  Identities=25%  Similarity=0.388  Sum_probs=57.9

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  436 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavn  436 (558)
                      ..|+.+||+||++||+.|..|++|||++....+|++||..||+||+.|+.+++.|..+...+.
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999999875569999999999999999999999998877653

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.3e-13  Score=109.95  Aligned_cols=62  Identities=16%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGCS---KVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN  436 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~~---K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavn  436 (558)
                      ..|+.+||+||++||+.|..|++|||.+.   | .+|++||.+||+||+.|+.+++.|..+...+.
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~   67 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ   67 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999763   4 48999999999999999999999988776544

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=8.5e-14  Score=108.93  Aligned_cols=51  Identities=27%  Similarity=0.460  Sum_probs=46.3

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC-------CCCCCchhhHHHHHHHHHHHHHHH
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGC-------SKVTGKAVMLDEIINYVQSLQRQV  425 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~-------~K~tDKASILdeAI~YIK~LQ~QV  425 (558)
                      ..|+++||+||++||+.|..|++|||.+       .|+ +|++||+.||+||+.||++|
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~-sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAP-SKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCS-CTTHHHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccc-cHHHHHHHHHHHHHHHHHhh
Confidence            3699999999999999999999999953       454 89999999999999999876

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.7e-14  Score=108.52  Aligned_cols=54  Identities=26%  Similarity=0.341  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008631          384 REKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNP  437 (558)
Q Consensus       384 ReKINer~kaLq~LVP~~~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp  437 (558)
                      |++||++|.+|++|||++.++++||+||.+||+||++||.|++.|++++..+..
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~   54 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKL   54 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999998755699999999999999999999999998876543

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.2e-13  Score=109.81  Aligned_cols=53  Identities=23%  Similarity=0.350  Sum_probs=47.8

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHH
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGCS-KVTGKAVMLDEIINYVQSLQRQVE  426 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~~-K~tDKASILdeAI~YIK~LQ~QVe  426 (558)
                      ..|+..||+||++||+.|..|++|||.+. +..+|++||..||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            36999999999999999999999999874 334899999999999999998775

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.5e-13  Score=109.72  Aligned_cols=62  Identities=26%  Similarity=0.452  Sum_probs=54.7

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGCS-KVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV  435 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~~-K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aav  435 (558)
                      ..|+.+||+||++||+.|..|++|||++. +..+|++||..||+||+.|+.+++.|..+...+
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   66 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999752 334999999999999999999999998876653

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.5e-13  Score=110.82  Aligned_cols=64  Identities=27%  Similarity=0.398  Sum_probs=56.6

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPR  438 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~---~K~tDKASILdeAI~YIK~LQ~QVe~Le~k~aavnp~  438 (558)
                      ..|+.+||+||++||+.|..|++|||++   .|. +|++||..||+||+.|+.+++.|+.+...+..+
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~-sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~   74 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDLLRKR   74 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999975   344 899999999999999999999999887765443

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.9e-13  Score=104.64  Aligned_cols=51  Identities=29%  Similarity=0.481  Sum_probs=46.2

Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhcCCCCC------CCCCchhhHHHHHHHHHHHHHHH
Q 008631          374 NSHSLAERVRREKISERMKFLQDLVPGCS------KVTGKAVMLDEIINYVQSLQRQV  425 (558)
Q Consensus       374 ~~HslaERrRReKINer~kaLq~LVP~~~------K~tDKASILdeAI~YIK~LQ~QV  425 (558)
                      ..|+.+||+||++||+.|.+|++|||.+.      |+ +|++||..||+||+.||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~-sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQ-SKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCC-CTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCC-CHHHHHHHHHHHHHHHHHhh
Confidence            46999999999999999999999999764      54 89999999999999999753