Citrus Sinensis ID: 008632
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WP01 | 557 | Probable peptide/nitrate | yes | no | 0.931 | 0.933 | 0.620 | 0.0 | |
| Q0WSZ6 | 561 | Probable peptide/nitrate | no | no | 0.964 | 0.959 | 0.595 | 0.0 | |
| Q9SK96 | 564 | Probable peptide/nitrate | no | no | 0.978 | 0.968 | 0.579 | 0.0 | |
| Q8VZE2 | 557 | Probable peptide/nitrate | no | no | 0.962 | 0.964 | 0.596 | 1e-180 | |
| Q9SK99 | 565 | Probable peptide/nitrate | no | no | 0.924 | 0.913 | 0.564 | 1e-169 | |
| Q9C7U1 | 555 | Probable peptide/nitrate | no | no | 0.939 | 0.944 | 0.546 | 1e-168 | |
| Q8RX67 | 538 | Probable peptide/nitrate | no | no | 0.935 | 0.970 | 0.524 | 1e-154 | |
| Q9M1I2 | 555 | Probable peptide/nitrate | no | no | 0.908 | 0.913 | 0.431 | 1e-137 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.946 | 0.926 | 0.390 | 1e-124 | |
| Q8VZR7 | 583 | Probable peptide/nitrate | no | no | 0.940 | 0.900 | 0.412 | 1e-117 |
| >sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/545 (62%), Positives = 424/545 (77%), Gaps = 25/545 (4%)
Query: 21 VDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVN 80
VD++ +P + +SGGWR+A FIIGVEVAERFAYYGISSNLITYLTG LG+STA AAA VN
Sbjct: 19 VDYRNKPAVKSSSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANVN 78
Query: 81 VWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNT 140
WSGTASLLPLLGAF+ADSFLGRFRTI+ AS +YI+GL ++TL A+I SDC+ +N
Sbjct: 79 AWSGTASLLPLLGAFVADSFLGRFRTILAASALYIVGLGVLTLSAMI----PSDCKVSNL 134
Query: 141 AKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYF 200
SCSP FQ+I F +LYLVA+ QGGHKPC QAFGADQFD + P+E +AKSSFFNWWYF
Sbjct: 135 LSSCSPR-FQVITFFSALYLVALAQGGHKPCVQAFGADQFDEKEPEECKAKSSFFNWWYF 193
Query: 201 GISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFA 260
G+ FG +T+ V+ YIQDNL+WALGFGIPC MV ALV+ LLGT TYRFSI+ + ++PF
Sbjct: 194 GMCFGTLTTLWVLNYIQDNLSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQSPFV 253
Query: 261 RIGRVFVVAIKTRKATLASEDEAQSSQQFKF-----------LNKALLATPDVSLEDGKL 309
RIG V+V A+K ++++ D A + ++ LNKAL+A ++G
Sbjct: 254 RIGNVYVAAVKNW--SVSALDVAAAEERLGLVSCSSSQQFSFLNKALVA------KNGS- 304
Query: 310 CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQL 369
C+++++EEAK++LRL PIW TCLVYA+VFAQ TFFTKQGATM+R+IT KI A+LQ
Sbjct: 305 CSIDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATLQS 364
Query: 370 FIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLE 429
FI + I+ FIPIYD + +PI R FT P GITMLQRIG G+ LS ++MVVAALVE+KRL+
Sbjct: 365 FISLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLK 424
Query: 430 TAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIY 489
TA +YGL+D P+ T+P SVWWL+PQY+L GI DVF +VGLQEFFYDQ+P EL+S GL++Y
Sbjct: 425 TAADYGLVDSPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLALY 484
Query: 490 MSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLY 549
+S+ G+G FLSS ++SII +ATS+ G SWFA+NLN+AHLDYFYWLLA LS GL ++LY
Sbjct: 485 LSIFGIGNFLSSFMISIIEKATSQSGQASWFANNLNQAHLDYFYWLLACLSFIGLASYLY 544
Query: 550 FAKSY 554
AKSY
Sbjct: 545 VAKSY 549
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/561 (59%), Positives = 411/561 (73%), Gaps = 23/561 (4%)
Query: 7 STTETLLPEN-TIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLT 65
+T++T L E I VDH+G R +G WRAA FIIGVEVAERFA YGI SNLI+YLT
Sbjct: 3 TTSKTSLQEEYVIDAVDHRGFSARRSITGRWRAAWFIIGVEVAERFANYGIGSNLISYLT 62
Query: 66 GQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLA 125
G LG+STA AAA VN WSG +++LPLLGAF+AD+FLGR+ TI++AS IY+LGL+ +TL A
Sbjct: 63 GPLGQSTAVAAANVNAWSGISTILPLLGAFVADAFLGRYITIIIASFIYVLGLAFLTLSA 122
Query: 126 LITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNP 185
+ NNT + SP F +F FSLYLVAIGQ GHKPC QAFGADQFD +NP
Sbjct: 123 FLI--------PNNTEVTSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAFGADQFDEKNP 174
Query: 186 QERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTK 245
QE +SSFFNWWY + G ILVV+YIQ+N++WALGFGIPC FMV +LVLF+LG K
Sbjct: 175 QENSDRSSFFNWWYLSMCAGIGLAILVVVYIQENVSWALGFGIPCVFMVISLVLFVLGRK 234
Query: 246 TYRFSIKSKQR---NPFARIGRVFVVAIKTR--------KATLASEDEAQSS-QQFKFLN 293
+YRFS K++Q NPF RIGRVF VA K + K L + +Q S ++ FLN
Sbjct: 235 SYRFS-KTRQEEETNPFTRIGRVFFVAFKNQRLNSSDLCKVELIEANRSQESPEELSFLN 293
Query: 294 KALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMD 353
KALL P+ S E C DVE+A AL+RLIP+W T L YAI FAQY TFFTKQG TM+
Sbjct: 294 KALLV-PNDSDEGEVACKSRDVEDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQGVTME 352
Query: 354 RTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLS 413
RTI ++IP ASLQ+ I I I+ F+PIYD + VPI R T++P GIT L+RIG GM+L+
Sbjct: 353 RTIFPGVEIPPASLQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMVLA 412
Query: 414 SISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFF 473
+++MVVAALVE KRLETAKEYGLID+P T+P S+WWL PQY+L G+ADV T+VG+QEFF
Sbjct: 413 TLTMVVAALVESKRLETAKEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVGMQEFF 472
Query: 474 YDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFY 533
Y Q+P EL+S GL+IY+S +GVG LSS+L+ +I+ AT D G+SWF NLNRAHLDYFY
Sbjct: 473 YSQVPTELRSLGLAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNSWFNSNLNRAHLDYFY 532
Query: 534 WLLAALSAGGLLAFLYFAKSY 554
WLLA +SA G FL+ +KSY
Sbjct: 533 WLLAVVSAVGFFTFLFISKSY 553
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SK96|PTR10_ARATH Probable peptide/nitrate transporter At1g22550 OS=Arabidopsis thaliana GN=At1g22550 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 637 bits (1642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/564 (57%), Positives = 418/564 (74%), Gaps = 18/564 (3%)
Query: 1 MAISELSTTETLLPENTIG-FVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSN 59
MAI+E E L E+++ VDH+G P + ++GGWR+A +IIGVEV ERFAY+GI SN
Sbjct: 1 MAIAE---EEAALIEDSVSDSVDHRGLPAGKSSTGGWRSAWYIIGVEVGERFAYFGIGSN 57
Query: 60 LITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLS 119
LITYLTG LG+STATAA VN WSGTAS+LP+LGAF+AD++LGR+RTIVVASLIYILGL
Sbjct: 58 LITYLTGPLGQSTATAAVNVNTWSGTASILPVLGAFIADAYLGRYRTIVVASLIYILGLG 117
Query: 120 MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQ 179
++TL +++ L+ S+ + +N S P + I+F SLYLVAIGQGGHKPC QAFGADQ
Sbjct: 118 LLTLSSILILMGLSEQRQHNRNASAKPFFWVNILFFCSLYLVAIGQGGHKPCVQAFGADQ 177
Query: 180 FDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 239
FD +P+ER ++ SFFNWW+ +S G +I+VV+Y+QDN+NWALGFGIPC FMV AL L
Sbjct: 178 FDVGDPKERISRGSFFNWWFLSLSAGITLSIIVVVYVQDNVNWALGFGIPCLFMVMALAL 237
Query: 240 FLLGTKTYRFSIKSKQ--RNPFARIGRVFVVAIKTRKATLASEDE------AQSSQQFKF 291
FL G KTYR+ ++ N FARIGRVF+VA K RK L + + Q +F
Sbjct: 238 FLFGRKTYRYPRGDREGKNNAFARIGRVFLVAFKNRKLKLTHSGQLEVGSYKKCKGQLEF 297
Query: 292 LNKALLATPDVSLEDG-KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA 350
L KALL E G + C+ DVE+A AL+RLIPIW T +V I +AQY TFFTKQG
Sbjct: 298 LAKALLPG-----EGGVEPCSSRDVEDAMALVRLIPIWITSVVSTIPYAQYATFFTKQGV 352
Query: 351 TMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGM 410
T+DR I +IP AS Q IG+ I +P Y+ +F+P+ R T+ PSGITMLQRIGAGM
Sbjct: 353 TVDRKILPGFEIPPASFQALIGLSIFISVPTYERVFLPLARLITKKPSGITMLQRIGAGM 412
Query: 411 LLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQ 470
+LSS++MVVAALVE+KRLETAKE+GL+D+P+ TIP S+WW +PQYLL G+ DVF++VG Q
Sbjct: 413 VLSSLNMVVAALVEMKRLETAKEHGLVDRPDATIPMSIWWFVPQYLLLGMIDVFSLVGTQ 472
Query: 471 EFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLD 530
EFFYDQ+P EL+S GL++ +S +G+ FLS L+++IN AT ++GGDSWF NLNRAH+D
Sbjct: 473 EFFYDQVPTELRSIGLALSLSAMGLASFLSGFLITVINWATGKNGGDSWFNTNLNRAHVD 532
Query: 531 YFYWLLAALSAGGLLAFLYFAKSY 554
YFYWLLAA +A G LAFL ++ Y
Sbjct: 533 YFYWLLAAFTAIGFLAFLLLSRLY 556
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZE2|PTR22_ARATH Probable peptide/nitrate transporter At1g72120 OS=Arabidopsis thaliana GN=At1g72120 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 630 bits (1626), Expect = e-180, Method: Compositional matrix adjust.
Identities = 333/558 (59%), Positives = 414/558 (74%), Gaps = 21/558 (3%)
Query: 7 STTETLLPENTI-GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLT 65
+T+E L E + VDH+G R N+G WRAA FIIGVEVAERFAYYGI SNLI+YLT
Sbjct: 3 TTSEISLQEEYVTDAVDHRGLAARRSNTGRWRAALFIIGVEVAERFAYYGIGSNLISYLT 62
Query: 66 GQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLA 125
G LGESTA AAA VN WSG A+LLP+LGAF+AD+FLGR+RTI+++SLIY+LGL+ +TL A
Sbjct: 63 GPLGESTAVAAANVNAWSGIATLLPVLGAFVADAFLGRYRTIIISSLIYVLGLAFLTLSA 122
Query: 126 LITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNP 185
+ N T + S F ++F FSLYLVAIGQ GHKPC QAFGADQFD ++
Sbjct: 123 FLI--------PNTTEVTSSTSSFLNVLFFFSLYLVAIGQSGHKPCVQAFGADQFDEKDS 174
Query: 186 QERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTK 245
QE+ +SSFFNWWY +S G ILVV+YIQ+ +WA GFGIPC FMV +LVLF+ G +
Sbjct: 175 QEKSDRSSFFNWWYLSLSAGICFAILVVVYIQEEFSWAFGFGIPCVFMVISLVLFVSGRR 234
Query: 246 TYRFSIKSKQR--NPFARIGRVFVVAIKTRKATLASED------EAQSS-QQFKFLNKAL 296
YR+S + + NPF RIGRVF VA+K ++ L+S D EA +S ++ F NKAL
Sbjct: 235 IYRYSKRRHEEEINPFTRIGRVFFVALKNQR--LSSSDLCKVELEANTSPEKQSFFNKAL 292
Query: 297 LATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTI 356
L P+ S + DVE+A AL+RLIP+W T L YAI +AQY TFFTKQG TMDRTI
Sbjct: 293 L-VPNDSSQGENASKSSDVEDATALIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTMDRTI 351
Query: 357 TRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSIS 416
+KIP ASLQ+FIGI I+ F+PIYD +FVPI R T+ P GIT L+RIG G++LS+I+
Sbjct: 352 LPGVKIPPASLQVFIGISIVLFVPIYDRVFVPIARLITKEPCGITTLKRIGTGIVLSTIT 411
Query: 417 MVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQ 476
MV+AALVE KRLETAKE+GLID+P T+P S+WWLIPQYLL G+ADV+T+VG+QEFFY Q
Sbjct: 412 MVIAALVEFKRLETAKEHGLIDQPEATLPMSIWWLIPQYLLLGLADVYTLVGMQEFFYSQ 471
Query: 477 IPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLL 536
+P EL+S GL++Y+S LGVG LSS+L+S+I+ AT D G+SWF NLNRAHLDYFYWLL
Sbjct: 472 VPTELRSIGLALYLSALGVGSLLSSLLISLIDLATGGDAGNSWFNSNLNRAHLDYFYWLL 531
Query: 537 AALSAGGLLAFLYFAKSY 554
A +SA G FL+ +KSY
Sbjct: 532 AIVSAVGFFTFLFISKSY 549
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SK99|PTR11_ARATH Probable peptide/nitrate transporter At1g22570 OS=Arabidopsis thaliana GN=At1g22570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 594 bits (1532), Expect = e-169, Method: Compositional matrix adjust.
Identities = 303/537 (56%), Positives = 395/537 (73%), Gaps = 21/537 (3%)
Query: 12 LLPENTIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGES 71
LL + VDH+G P + ++GGWR+A FIIGVEVAERFAY+GI+ NLITYLTG LG+S
Sbjct: 10 LLEDYVSDSVDHRGFPAGKSSTGGWRSAWFIIGVEVAERFAYFGIACNLITYLTGPLGQS 69
Query: 72 TATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLS 131
TA AA VN WSGTAS+LP+LGAF+AD++LGR+RTIVVASLIYILGL ++TL A + ++
Sbjct: 70 TAKAAVNVNTWSGTASILPILGAFVADAYLGRYRTIVVASLIYILGLGLLTLSASLIIMG 129
Query: 132 SSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191
S +N+ +AK P + +F SLYLVAIGQGGHKPC QAFGADQFDA++P+E A+
Sbjct: 130 LSKQRNDASAK---PSIWVNTLFFCSLYLVAIGQGGHKPCVQAFGADQFDAEDPKEVIAR 186
Query: 192 SSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSI 251
SFFNWW+ +S G + +I+VV Y+Q+N+NWA GFGIPC FMV AL +FLLG K YR+
Sbjct: 187 GSFFNWWFLSLSAGISISIIVVAYVQENVNWAFGFGIPCLFMVMALAIFLLGRKIYRYPK 246
Query: 252 KSKQR----NPFARIGRVFVVAIKTRKATLASE---------DEAQSSQQFKFLNKALLA 298
+ N FARIGRVFV+A K RK L ++ QS ++ LN LA
Sbjct: 247 GHHEEVNSSNTFARIGRVFVIAFKNRKLRLEHSSLELDQGLLEDGQSEKRKDRLN--FLA 304
Query: 299 TPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITR 358
+S E + C+ DV++AKAL+RLIPIW T +V I +AQY TFFTKQG T+DR I
Sbjct: 305 KAMISREGVEPCSGRDVDDAKALVRLIPIWITYVVSTIPYAQYITFFTKQGVTVDRRILP 364
Query: 359 SIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMV 418
++IPAASL F+G+ I+ +P+Y+ +F+PI R T+ P GITMLQRIGAGM+LS +M+
Sbjct: 365 GVEIPAASLLSFVGVSILISVPLYERVFLPIARKITKKPFGITMLQRIGAGMVLSVFNMM 424
Query: 419 VAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP 478
+AALVE KRL+ A+E+GL+DKP+VT+P S+WW +PQYLL G+ D+F++VG QEFFYDQ+P
Sbjct: 425 LAALVESKRLKIAREHGLVDKPDVTVPMSIWWFVPQYLLLGMIDLFSMVGTQEFFYDQVP 484
Query: 479 KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWL 535
EL+S GLS+ +S +G+ FLS L+S+I+ AT +DG WF NLNRAH+DYFYWL
Sbjct: 485 TELRSIGLSLSLSAMGLSSFLSGFLISLIDWATGKDG---WFNSNLNRAHVDYFYWL 538
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7U1|PTR25_ARATH Probable peptide/nitrate transporter At1g72140 OS=Arabidopsis thaliana GN=At1g72140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 591 bits (1523), Expect = e-168, Method: Compositional matrix adjust.
Identities = 300/549 (54%), Positives = 400/549 (72%), Gaps = 25/549 (4%)
Query: 15 ENTIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTAT 74
EN VD +G P R +SG W+++ F + EVAE+FAY+GI+SNLITY T LGESTA
Sbjct: 17 ENVEFSVDFRGNPSIRSSSGAWKSSGFTMCAEVAEKFAYFGIASNLITYFTEALGESTAV 76
Query: 75 AAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSD 134
AA+ VN+W GTA+ LPL+ +ADSFLGRFRTI++ S YI+GL ++T A I L
Sbjct: 77 AASNVNLWLGTAAFLPLIWGSIADSFLGRFRTILLTSSFYIMGLGLLTFSATIPSL---- 132
Query: 135 CQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194
C + T +SC ++I+F +LYL+A+G+GG K C +AFGADQFD Q+P E +AKSS+
Sbjct: 133 CNDQETRESCV-SQVKVIIFFCALYLIALGEGGFKVCLRAFGADQFDEQDPNESKAKSSY 191
Query: 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSK 254
FNW YF IS G +T LV Y+Q+NL+WALG+ IPC M+ AL LFLLG KTYRFS +
Sbjct: 192 FNWLYFAISIGILTTRLVTNYVQENLSWALGYAIPCLSMMLALFLFLLGIKTYRFSTGGE 251
Query: 255 QR------NPFARIGRVFVVAIKTRKATLASED---EAQSSQQFKFLNKALLATPDVSLE 305
R NPF RIGRVFV A + R+ T + +S+++F+FL++A+++
Sbjct: 252 GRQGKKHDNPFVRIGRVFVAAARNRRQTPSDTCLLLPNESTKKFRFLDRAVIS------- 304
Query: 306 DGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAA 365
C +VEEAKA+L LIPIW LV+ IVFAQ TFFTKQG+TMDR+I+ ++++PAA
Sbjct: 305 ----CDSYEVEEAKAVLSLIPIWLCSLVFGIVFAQSPTFFTKQGSTMDRSISSTLQVPAA 360
Query: 366 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEI 425
+LQ FI + I+ FIPIYD +FVPI R T+ P+GIT LQRI G+ LS ISMV+AALVE+
Sbjct: 361 TLQCFISLAILVFIPIYDRLFVPIARSITRKPAGITTLQRISTGIFLSIISMVIAALVEM 420
Query: 426 KRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFG 485
KRL+TA+++GL+D P T+P SV WLIPQY+L G++DVFT+VGLQEFFY ++P +L+S G
Sbjct: 421 KRLKTARDHGLVDSPKATVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYGEVPPQLRSMG 480
Query: 486 LSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLL 545
L++Y+S++G+G FLSS +VS+I EATS+ G SWF++NLN+AHLDYFYWLLA LS+ +
Sbjct: 481 LALYLSIIGIGNFLSSFMVSVIEEATSQSGQVSWFSNNLNQAHLDYFYWLLACLSSLAFI 540
Query: 546 AFLYFAKSY 554
+YFAKSY
Sbjct: 541 FTVYFAKSY 549
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX67|PTR24_ARATH Probable peptide/nitrate transporter At1g72130 OS=Arabidopsis thaliana GN=At1g72130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1407), Expect = e-154, Method: Compositional matrix adjust.
Identities = 300/572 (52%), Positives = 398/572 (69%), Gaps = 50/572 (8%)
Query: 1 MAISELSTTETLLPENTIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNL 60
MAI+ S E L T GF++ I SGGW++A II V++AERFAY+GI+SNL
Sbjct: 1 MAITYSSADE--LGNTTEGFLE-----IRENTSGGWKSARLIIVVQMAERFAYFGIASNL 53
Query: 61 ITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSM 120
I YLTG LGESTA AAA VN W+GT + LPLLG FLADS+LGRFRTI+++S +YILGL
Sbjct: 54 IMYLTGPLGESTAAAAANVNAWTGTVAFLPLLGGFLADSYLGRFRTIIISSSLYILGLG- 112
Query: 121 MTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQF 180
LL+ T++ S +++N Q +F FSLYLVAIGQGG+ PC + FGADQF
Sbjct: 113 --LLSFSTMIPSHQSKDSN--------QLQETIFFFSLYLVAIGQGGYNPCIKVFGADQF 162
Query: 181 DAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240
D + +E R KSSFFNW FG +T LV YIQ+NL+W+LGFGIP M+ +L LF
Sbjct: 163 DGNDHKEARDKSSFFNWLMFGNCISILTTRLVSTYIQENLSWSLGFGIPSVSMLLSLFLF 222
Query: 241 LLGTKTYRFSI-KSKQRNPFARIGRVFVVAIKTRKA-----TLASEDEA------QSSQQ 288
LLGT +YRFS + ++NPFARI RVF+ A+K R+ A+ +E QSS+Q
Sbjct: 223 LLGTTSYRFSTERVGKKNPFARISRVFMEALKNRRQPDLDIANANANETLLLLAHQSSKQ 282
Query: 289 FKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQ 348
F+FL++A ++ C L ++EEAKA+LRLIPIW T +VY IV AQ TFFTKQ
Sbjct: 283 FRFLDRAAIS-----------CELAEIEEAKAVLRLIPIWITSVVYTIVHAQSPTFFTKQ 331
Query: 349 GATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGA 408
GATMDR+I+ + +PAA+LQ FI + ++ FIPIYD + VP R FTQN SGIT LQRIG
Sbjct: 332 GATMDRSISPGLLVPAATLQSFINLSVVVFIPIYDRLLVPFARSFTQNSSGITTLQRIGT 391
Query: 409 GMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVG 468
G+ LS ++MV+AALVE KRL+ A++ ++IP SVWWLIPQY++ G++D+FT+VG
Sbjct: 392 GIFLSILAMVLAALVETKRLQAARD-------ELSIPMSVWWLIPQYVIFGVSDMFTMVG 444
Query: 469 LQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAH 528
LQEFFY Q+P EL+S G+++ +S+ G G +LSS ++S+I++ T++ G SWF ++L++AH
Sbjct: 445 LQEFFYGQVPSELRSVGMALNLSIYGAGNYLSSFMISVIDKITNQYGQRSWFDNDLDQAH 504
Query: 529 LDYFYWLLAALSAGGLLAFLYFAKS--YNREN 558
LDYFYWLLA L G +L+FAKS Y+R N
Sbjct: 505 LDYFYWLLACLGFIGFAFYLWFAKSYVYSRSN 536
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 238/552 (43%), Positives = 352/552 (63%), Gaps = 45/552 (8%)
Query: 28 IDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTAS 87
I++ GGW AA FII VE+AERFA+YG++SNLIT+LT +LG+STATAA +N W G +
Sbjct: 8 INKRTKGGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSC 67
Query: 88 LLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPH 147
+ P+LGAFLADS LGRF+T+++ S IY+LG+ M+ L + +
Sbjct: 68 MFPILGAFLADSILGRFKTVLLTSFIYLLGIVMLPL-----------------SVTVVAR 110
Query: 148 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGAN 207
+ VF +LY++A+G+GGHKPC F ADQF N +E+ AK+SFFN+WY I ++
Sbjct: 111 RMREKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASS 170
Query: 208 STILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFV 267
+L +I+IQ+ ++W+LGF I +V A+V+FL+G YR + +PF R+ +V V
Sbjct: 171 IAVLALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVG--SPFTRVAQVMV 228
Query: 268 VAIKTRKAT---------LASEDEAQ-------------SSQQFKFLNKALLATP---DV 302
A+K + + EDE + + QF+FL+KA + +
Sbjct: 229 AALKKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNK 288
Query: 303 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKI 362
+ +LCT+ VEE K +LRLIPIW + +++ Q TFF KQG+ MDRTI I
Sbjct: 289 NRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTI 348
Query: 363 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAAL 422
P A+ Q +G+ I+ IP+YD +FVP+ R T + SGIT LQRIG G+ +++ +MV+ L
Sbjct: 349 PPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGL 408
Query: 423 VEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK 482
VE KRL+ A+++GLID P +P S WL+PQY+L GI DVFTIVG+QE FYDQ+P+ ++
Sbjct: 409 VEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMR 468
Query: 483 SFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAG 542
S G +I++SV+GVG F+S+ ++S + + S+ G+ W +NLNRAHLDY+YW++A+L+A
Sbjct: 469 SIGAAIFISVVGVGSFVSTGIISTV-QTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAV 527
Query: 543 GLLAFLYFAKSY 554
L +L+ A +
Sbjct: 528 SLCFYLFIANHF 539
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/558 (39%), Positives = 342/558 (61%), Gaps = 30/558 (5%)
Query: 19 GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAA 78
G VD P ++ +G W+A FI+G E ER AYYG+ +NL+ YL +L + ATAA
Sbjct: 11 GTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANN 70
Query: 79 VNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNN 138
V WSGT + PL+GAF+AD++LGR+ TI IY+ G++++TL A + L +C
Sbjct: 71 VTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN-- 128
Query: 139 NTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWW 198
A +C P+ Q VF +LY++A+G GG KPC +FGADQFD + E+ KSSFFNW+
Sbjct: 129 --ADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWF 186
Query: 199 YFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNP 258
YF I+ GA V+++IQ N+ W GFG+P MV A+ F G++ YR ++ +P
Sbjct: 187 YFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR--LQRPGGSP 244
Query: 259 FARIGRVFVVAIKTRKATL---------ASEDEAQ--------SSQQFKFLNKALLATPD 301
RI +V V A + + ++DE+ + KF +KA + +
Sbjct: 245 LTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQS 304
Query: 302 VSLEDG-----KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTI 356
S++DG +LC++ VEE K+++ L+P+WAT +V+A V++Q +T F QG TMD+ +
Sbjct: 305 DSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHM 364
Query: 357 TRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSIS 416
++ +IP+ASL LF + ++ + P+YD +P+ R FT+N G T LQR+G G+++S +
Sbjct: 365 GKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFA 424
Query: 417 MVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQ 476
M+ A ++E+ RL+ K + D+ + + S++W IPQYLL G A+VFT +G EFFYDQ
Sbjct: 425 MITAGVLEVVRLDYVKTHNAYDQKQIHM--SIFWQIPQYLLIGCAEVFTFIGQLEFFYDQ 482
Query: 477 IPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLL 536
P ++S ++ ++ + +G +LS++LV+++ + T ++G W DNLNR HLDYF++LL
Sbjct: 483 APDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLL 542
Query: 537 AALSAGGLLAFLYFAKSY 554
A LS L +L+ +K Y
Sbjct: 543 ATLSFLNFLVYLWISKRY 560
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/553 (41%), Positives = 331/553 (59%), Gaps = 28/553 (5%)
Query: 19 GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAA 78
G VD QGRP+ +G WRA SF++G E ER A+YGI+SNL+ YLT +L E T ++
Sbjct: 11 GTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHEDTISSVRN 70
Query: 79 VNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNN 138
VN WSG + P+ GA++ADS++GRF T +SLIY+LG+ ++T+ + L + C+N
Sbjct: 71 VNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLRPT-CENG 129
Query: 139 NTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWW 198
K+ S Q+ F SLY +AIG GG KP FGADQFD+ + +E++ K SFFNWW
Sbjct: 130 VCNKASS---LQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKVSFFNWW 186
Query: 199 YFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNP 258
F GA L ++YIQ+NL W LG+GIP ++ +LV+F +GT YR + K N
Sbjct: 187 MFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKV-IKTDNL 245
Query: 259 FARIGRVFVVAIKTRKATLASED-----------------EAQSSQQFKFLNKALLATPD 301
+ +V + A K RK + + + F+FL+KA + T
Sbjct: 246 AKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAAIKT-- 303
Query: 302 VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK 361
CT+ VE AK +L LI IW L+ + ++AQ T F KQG T+DR I + +
Sbjct: 304 ---SSRVPCTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNFQ 360
Query: 362 IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAA 421
IPAASL F+ + ++ +P+YD FVP R T NP GIT+LQR+G G + +++ +A+
Sbjct: 361 IPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIAS 420
Query: 422 LVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKEL 481
VE+KR+ KE+ I P +P S++WL+PQY L GI DVF +GL EFFYDQ P+E+
Sbjct: 421 AVEVKRMRVIKEFH-ITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEM 479
Query: 482 KSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSA 541
+S G + + S +G+G FL+S LV++I++ TS+ GG SW +NLN + LDY+Y L +S
Sbjct: 480 QSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYYGFLVVISI 539
Query: 542 GGLLAFLYFAKSY 554
+ F++ A Y
Sbjct: 540 VNMGLFVWAASKY 552
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | ||||||
| 359493466 | 572 | PREDICTED: probable peptide/nitrate tran | 0.971 | 0.947 | 0.652 | 0.0 | |
| 296089515 | 755 | unnamed protein product [Vitis vinifera] | 0.974 | 0.720 | 0.650 | 0.0 | |
| 147836333 | 584 | hypothetical protein VITISV_011767 [Viti | 0.971 | 0.928 | 0.641 | 0.0 | |
| 147826923 | 572 | hypothetical protein VITISV_000973 [Viti | 0.974 | 0.951 | 0.659 | 0.0 | |
| 359493470 | 572 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.974 | 0.951 | 0.659 | 0.0 | |
| 224146337 | 596 | predicted protein [Populus trichocarpa] | 0.958 | 0.897 | 0.650 | 0.0 | |
| 359493461 | 1115 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.495 | 0.653 | 0.0 | |
| 449451992 | 1122 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.978 | 0.486 | 0.621 | 0.0 | |
| 225460434 | 572 | PREDICTED: probable peptide/nitrate tran | 0.967 | 0.944 | 0.642 | 0.0 | |
| 224135651 | 557 | proton-dependent oligopeptide transporte | 0.962 | 0.964 | 0.642 | 0.0 |
| >gi|359493466|ref|XP_003634604.1| PREDICTED: probable peptide/nitrate transporter At1g22540-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/552 (65%), Positives = 437/552 (79%), Gaps = 10/552 (1%)
Query: 12 LLPENTIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGES 71
LL + G+ DH+GRP R SG WR+A FIIGVEVAERFAY GI +NLI YLTG+LG S
Sbjct: 14 LLEDIVDGYTDHKGRPARRSTSGCWRSAYFIIGVEVAERFAYSGIQANLINYLTGRLGLS 73
Query: 72 TATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLS 131
ATAA VN WSGT LLPL+GAF+ADS+LGR+RTI++AS +YILGL ++TL A++ S
Sbjct: 74 MATAAENVNTWSGTGGLLPLVGAFVADSYLGRYRTIIIASFLYILGLGLLTLSAVLPSPS 133
Query: 132 SSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191
SDCQ +N SCSP QII+F FSLYLVA+GQGGHKPC QAFGADQFD +NP+E +AK
Sbjct: 134 PSDCQKSNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCNQAFGADQFDGRNPEECKAK 193
Query: 192 SSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSI 251
SSFFNWWYFG+ FG V+ YIQ+NLNW LGFGIPC M+AAL+LFLLGT+TYR+S+
Sbjct: 194 SSFFNWWYFGLCFGTVINYSVLSYIQENLNWGLGFGIPCVVMIAALLLFLLGTRTYRYSV 253
Query: 252 KSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFKFLNKALLATPDV 302
K+ +++PF RIG+VF+ A K T + +A+E+ A Q SQQFK LNKALLA PD
Sbjct: 254 KTDEKSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQVSQQFKCLNKALLA-PDG 312
Query: 303 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKI 362
S +G+ CT+++VEEAKA+LRL PIW TCLVYAI FAQ +TFFTKQG TMDR+I I I
Sbjct: 313 SKGNGRQCTIDNVEEAKAVLRLFPIWTTCLVYAIAFAQSSTFFTKQGITMDRSIGWGIDI 372
Query: 363 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAAL 422
PA+SLQ FIG+ I+ +PIYD I VPI R T+ PSGITMLQRIG GM LS+ISMVVAAL
Sbjct: 373 PASSLQGFIGLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAISMVVAAL 432
Query: 423 VEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK 482
VE+KRL+TA+E+GL+D PNVT+P SVWWL+PQY+L G++DV TIVGLQEFFYDQ+P EL+
Sbjct: 433 VEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVVTIVGLQEFFYDQVPTELR 492
Query: 483 SFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAG 542
S G+++Y+S+LGVG FLSS L+S I +AT DG SWF DNLNRAHLD +YW+LA LSA
Sbjct: 493 SVGIALYLSILGVGNFLSSFLISAIEKATGGDGQHSWFNDNLNRAHLDNYYWVLAGLSAV 552
Query: 543 GLLAFLYFAKSY 554
GL +LYFAKSY
Sbjct: 553 GLSLYLYFAKSY 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089515|emb|CBI39334.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/555 (65%), Positives = 440/555 (79%), Gaps = 11/555 (1%)
Query: 10 ETLLPENTI-GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQL 68
E+ L E+ + G+ DH+GRP R SG WR+A FIIGVEVAERFAY GI +NLI YLTG+L
Sbjct: 11 ESPLLEDIVDGYTDHKGRPARRSTSGCWRSAYFIIGVEVAERFAYSGIQANLINYLTGRL 70
Query: 69 GESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALIT 128
G S ATAA VN WSGT LLPL+GAF+ADS+LGR+RTI++AS +YILGL ++TL A++
Sbjct: 71 GLSMATAAENVNTWSGTGGLLPLVGAFVADSYLGRYRTIIIASFLYILGLGLLTLSAVLP 130
Query: 129 LLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQER 188
S SDCQ +N SCSP QII+F FSLYLVA+GQGGHKPC QAFGADQFD +NP+E
Sbjct: 131 SPSPSDCQKSNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCNQAFGADQFDGRNPEEC 190
Query: 189 RAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYR 248
+AKSSFFNWWYFG+ FG V+ YIQ+NLNW LGFGIPC M+AAL+LFLLGT+TYR
Sbjct: 191 KAKSSFFNWWYFGLCFGTVINYSVLSYIQENLNWGLGFGIPCVVMIAALLLFLLGTRTYR 250
Query: 249 FSIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFKFLNKALLAT 299
+S+K+ +++PF RIG+VF+ A K T + +A+E+ A Q SQQFK LNKALLA
Sbjct: 251 YSVKTDEKSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQVSQQFKCLNKALLA- 309
Query: 300 PDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRS 359
PD S +G+ CT+++VEEAKA+LRL PIW TCLVYAI FAQ +TFFTKQG TMDR+I
Sbjct: 310 PDGSKGNGRQCTIDNVEEAKAVLRLFPIWTTCLVYAIAFAQSSTFFTKQGITMDRSIGWG 369
Query: 360 IKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVV 419
I IPA+SLQ FIG+ I+ +PIYD I VPI R T+ PSGITMLQRIG GM LS+ISMVV
Sbjct: 370 IDIPASSLQGFIGLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAISMVV 429
Query: 420 AALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK 479
AALVE+KRL+TA+E+GL+D PNVT+P SVWWL+PQY+L G++DV TIVGLQEFFYDQ+P
Sbjct: 430 AALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVVTIVGLQEFFYDQVPT 489
Query: 480 ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAAL 539
EL+S G+++Y+S+LGVG FLSS L+S I +AT DG SWF DNLNRAHLD +YW+LA L
Sbjct: 490 ELRSVGIALYLSILGVGNFLSSFLISAIEKATGGDGQHSWFNDNLNRAHLDNYYWVLAGL 549
Query: 540 SAGGLLAFLYFAKSY 554
SA GL +LYFAKSY
Sbjct: 550 SAVGLSLYLYFAKSY 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147836333|emb|CAN75422.1| hypothetical protein VITISV_011767 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/564 (64%), Positives = 438/564 (77%), Gaps = 22/564 (3%)
Query: 12 LLPENTIGFVDHQGRPIDRLNSGGWRAASFII------------GVEVAERFAYYGISSN 59
LL + G+ DH+GRP R SG WR+A FII GVEVAERFAY GI +N
Sbjct: 14 LLEDIVDGYTDHKGRPARRSTSGCWRSAYFIIASSYRPRLYMXAGVEVAERFAYSGIQAN 73
Query: 60 LITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLS 119
LI YLTG+LG S ATAA VN WSGT LLPL+GAF+ADS+LGR+RTI++AS +YILGL
Sbjct: 74 LINYLTGRLGLSMATAAENVNTWSGTGGLLPLVGAFVADSYLGRYRTIIIASFLYILGLG 133
Query: 120 MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQ 179
++TL A++ S SDCQ +N SCSP QII+F FSLYLVA+GQGGHKPC QAFGADQ
Sbjct: 134 LLTLSAVLPSPSPSDCQKSNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCNQAFGADQ 193
Query: 180 FDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 239
FD +NP+E +AKSSFFNWWYFG+ FG V+ YIQ+NLNW LGFGIPC M+AAL+L
Sbjct: 194 FDGRNPEECKAKSSFFNWWYFGLCFGTVINYSVLSYIQENLNWGLGFGIPCVVMIAALLL 253
Query: 240 FLLGTKTYRFSIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFK 290
FLLGT+TYR+S+K+ +++PF RIG+VF+ A K T + +A+E+ A Q SQQFK
Sbjct: 254 FLLGTRTYRYSVKTDEKSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQXSQQFK 313
Query: 291 FLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA 350
LNKALLA PD S +G+ CT++DVEEAKA+LRL PIW TCLVYAI FAQ +TFFTKQG
Sbjct: 314 CLNKALLA-PDGSKGNGRQCTIDDVEEAKAVLRLFPIWTTCLVYAIAFAQSSTFFTKQGI 372
Query: 351 TMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGM 410
TMDR+I I IPA+SLQ FIG+ I+ +PIYD I VPI R T+ PSGITMLQRIG GM
Sbjct: 373 TMDRSIGWGIDIPASSLQGFIGLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGM 432
Query: 411 LLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQ 470
LS+ISMVVAALVE+KRL+TA+E+GL+D PNVT+P SVWWL+PQY+L G++DVFTIVGLQ
Sbjct: 433 FLSAISMVVAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVFTIVGLQ 492
Query: 471 EFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLD 530
EFFYDQ+P EL+S G+++Y+S+LGVG FLSS L+S I +AT DG SWF DNLNRAHLD
Sbjct: 493 EFFYDQVPTELRSVGIALYLSILGVGNFLSSFLISAIEKATGGDGQHSWFNDNLNRAHLD 552
Query: 531 YFYWLLAALSAGGLLAFLYFAKSY 554
+YW+LA LSA GL +LYFAKSY
Sbjct: 553 XYYWVLAGLSAVGLSLYLYFAKSY 576
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147826923|emb|CAN71099.1| hypothetical protein VITISV_000973 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/555 (65%), Positives = 446/555 (80%), Gaps = 11/555 (1%)
Query: 10 ETLLPENTI-GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQL 68
E+ L E+T+ G+ DH+GRP R SGGWR+A FIIGVEVAERFAYYGI +NLI YLTG+L
Sbjct: 11 ESPLLEDTVDGYTDHKGRPARRSTSGGWRSAYFIIGVEVAERFAYYGIQANLINYLTGRL 70
Query: 69 GESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALIT 128
G+S A+AA VN W+GT SLLPL+GAF+ADS+LGR+RTI++ASL+YILGL ++TL A++
Sbjct: 71 GQSIASAAENVNTWTGTGSLLPLVGAFVADSYLGRYRTIIIASLLYILGLGLLTLSAVLP 130
Query: 129 LLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQER 188
S SDC+ +N SCSP QII+F FSLYLVA+GQGGHKPCTQAFGADQFD +NP+E
Sbjct: 131 SPSPSDCKESNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCTQAFGADQFDGRNPEEC 190
Query: 189 RAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYR 248
+AKSSFFNWWYFG+ FG T V+ YIQ+NLNW LGFGIPC M+AAL+LFLLGT+TYR
Sbjct: 191 KAKSSFFNWWYFGLCFGTVITYSVLXYIQENLNWGLGFGIPCVVMIAALLLFLLGTRTYR 250
Query: 249 FSIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFKFLNKALLAT 299
+S+K +R+PF RIG+VF+ A K T + +A+E+ A Q SQQFK LNKALLA
Sbjct: 251 YSVKKDERSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQLSQQFKCLNKALLA- 309
Query: 300 PDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRS 359
PD S +G+ CT++DVEEAKA+LRL PIWATCLVYAIVFAQ +TFFTKQG TMDR+I
Sbjct: 310 PDGSKGNGRQCTIDDVEEAKAVLRLFPIWATCLVYAIVFAQSSTFFTKQGITMDRSIGWG 369
Query: 360 IKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVV 419
I IPA+SLQ FI + I+ +PIYD I VPI R T+ PSGITMLQRIG GM LS+ISMVV
Sbjct: 370 IDIPASSLQAFISLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAISMVV 429
Query: 420 AALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK 479
AALVE+KRL+TA+E+GL+D PNVT+P SVWWL+PQY+L G++DVFT+VGLQEFFYDQ+P
Sbjct: 430 AALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVFTMVGLQEFFYDQVPI 489
Query: 480 ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAAL 539
EL+S G+++Y+S+LGVG FLSS L+S I +AT DG S F DNLNRAHLDY+YW LA L
Sbjct: 490 ELRSVGIALYLSILGVGSFLSSFLISAIEKATGGDGQHSXFNDNLNRAHLDYYYWFLAGL 549
Query: 540 SAGGLLAFLYFAKSY 554
S GL + YFAKSY
Sbjct: 550 SVVGLSLYRYFAKSY 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493470|ref|XP_003634606.1| PREDICTED: LOW QUALITY PROTEIN: probable peptide/nitrate transporter At1g22540-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/555 (65%), Positives = 446/555 (80%), Gaps = 11/555 (1%)
Query: 10 ETLLPENTI-GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQL 68
E+ L E+T+ G+ DH+GRP R SGGWR+A FIIGVEVAERFAYYGI +NLI YLTG+L
Sbjct: 11 ESPLLEDTVDGYTDHKGRPARRSTSGGWRSAYFIIGVEVAERFAYYGIQANLINYLTGRL 70
Query: 69 GESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALIT 128
G+S A+AA VN W+GT SLLPL+GAF+ADS+LGR+RTI++ASL+YILGL ++TL A++
Sbjct: 71 GQSIASAAENVNTWTGTGSLLPLVGAFVADSYLGRYRTIIIASLLYILGLGLLTLSAVLP 130
Query: 129 LLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQER 188
S SDC+ +N SCSP QII+F FSLYLVA+GQGGHKPCTQAFGADQFD +NP+E
Sbjct: 131 SPSPSDCKESNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCTQAFGADQFDGRNPEEC 190
Query: 189 RAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYR 248
+AKSSFFNWWYFG+ FG T V+ YIQ+NLNW LGFGIPC M+AAL+LFLLGT+TYR
Sbjct: 191 KAKSSFFNWWYFGLCFGTVITYSVLTYIQENLNWGLGFGIPCVVMIAALLLFLLGTRTYR 250
Query: 249 FSIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFKFLNKALLAT 299
+S+K +R+PF RIG+VF+ A K T + +A+E+ A Q SQQFK LNKALLA
Sbjct: 251 YSVKKDERSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQLSQQFKCLNKALLA- 309
Query: 300 PDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRS 359
PD S +G+ CT++DVEEAKA+LRL PIWATCLVYAIVFAQ +TFFTKQG TMDR+I
Sbjct: 310 PDGSKGNGRQCTIDDVEEAKAVLRLFPIWATCLVYAIVFAQSSTFFTKQGITMDRSIGWG 369
Query: 360 IKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVV 419
I IPA+SLQ FI + I+ +PIYD I VPI R T+ PSGITMLQRIG GM LS+ISMVV
Sbjct: 370 IDIPASSLQAFISLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAISMVV 429
Query: 420 AALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK 479
AALVE+KRL+TA+E+GL+D PNVT+P SVWWL+PQY+L G++DVFT+VGLQEFFYDQ+P
Sbjct: 430 AALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVFTMVGLQEFFYDQVPI 489
Query: 480 ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAAL 539
EL+S G+++Y+S+LGVG FLSS L+S I +AT DG S F DNLNRAHLDY+YW LA L
Sbjct: 490 ELRSVGIALYLSILGVGSFLSSFLISAIEKATGGDGQHSXFNDNLNRAHLDYYYWFLAGL 549
Query: 540 SAGGLLAFLYFAKSY 554
S GL + YFAKSY
Sbjct: 550 SVVGLSLYRYFAKSY 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146337|ref|XP_002325970.1| predicted protein [Populus trichocarpa] gi|222862845|gb|EEF00352.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/558 (65%), Positives = 431/558 (77%), Gaps = 23/558 (4%)
Query: 19 GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAA 78
G VD++G P+ R SGGWR+ASFII VEVAERFAY+GISSNLITYLTG LG+STA+AAA
Sbjct: 32 GSVDYKGNPVHRSTSGGWRSASFIIAVEVAERFAYFGISSNLITYLTGPLGQSTASAAAN 91
Query: 79 VNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLL-------- 130
VN WSGTA+LLPLLGAF+ADSFLGR+RTI+ ASLIYIL +I
Sbjct: 92 VNTWSGTATLLPLLGAFVADSFLGRYRTIIAASLIYILSCVRFAWSGIIRWRGLGLLTLA 151
Query: 131 ------SSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQN 184
S D QN A +P FQ+ +F FS+YLVA GQGGHKPC AFGADQFD QN
Sbjct: 152 ATLTSDSVHDFQNIKDAMLSAPSQFQVTLFFFSIYLVAFGQGGHKPCALAFGADQFDGQN 211
Query: 185 PQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGT 244
P+E +AKSSFFNWWYF S G N T++V++YIQDNL+WALGFGIPC M L++ LLG+
Sbjct: 212 PKESKAKSSFFNWWYFYSSVGVNLTLVVMVYIQDNLSWALGFGIPCIVMTTTLLILLLGS 271
Query: 245 KTYRFSIKSKQRNPFARIGRVFVVAIKTRKAT----LASEDEA----QSSQQFKFLNKAL 296
+TYR+S+ ++NPF RIGRV AI+ R T + E++A QS +QFKFLNKAL
Sbjct: 272 RTYRYSVNGNEKNPFMRIGRVIHRAIRNRHTTPPSAMPGEEDACQWHQSHEQFKFLNKAL 331
Query: 297 LATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTI 356
LA PD SL D +C++ DVE+ KAL++L+PIW T L YA VFAQ TTFFTKQGAT+DRTI
Sbjct: 332 LA-PDGSLVDQNVCSVSDVEDTKALVKLVPIWITSLAYATVFAQTTTFFTKQGATLDRTI 390
Query: 357 TRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSIS 416
KIPAASLQ+FIG II FIP+YD I VPI R T+ PSGITMLQRIG GM+ S+IS
Sbjct: 391 VSGFKIPAASLQIFIGFAIILFIPVYDRIVVPIARGLTRKPSGITMLQRIGTGMVFSAIS 450
Query: 417 MVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQ 476
MV AALVE+KRLETAKE+GL+D PNVT+P S+WWL+PQY+LCGIADV TIVGLQEF YDQ
Sbjct: 451 MVTAALVEMKRLETAKEHGLVDLPNVTVPMSIWWLVPQYILCGIADVLTIVGLQEFCYDQ 510
Query: 477 IPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLL 536
+PKEL+S G+S+Y+S+LGVG FLSS LVS+I+EATS DG +SWFA NLNRAHLDYFYWLL
Sbjct: 511 VPKELRSLGISLYLSILGVGNFLSSFLVSVIDEATSGDGQESWFASNLNRAHLDYFYWLL 570
Query: 537 AALSAGGLLAFLYFAKSY 554
A LSA G +A+LYFA+SY
Sbjct: 571 AGLSAVGFIAYLYFARSY 588
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493461|ref|XP_002265921.2| PREDICTED: uncharacterized protein LOC100249450 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/565 (65%), Positives = 451/565 (79%), Gaps = 12/565 (2%)
Query: 1 MAISELST-TETLLPENTI-GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISS 58
MA S +S TET L ++T+ GF DH+GRP R +SGGWR+ASFIIGVEVAERFAYYGI S
Sbjct: 1 MAYSSISGGTETPLLDDTVDGFADHKGRPARRSSSGGWRSASFIIGVEVAERFAYYGIGS 60
Query: 59 NLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGL 118
NLI++L G LG+STA AAA VN WSGT++LLPLLGAF+AD++LGR+ TI+VASLIYILGL
Sbjct: 61 NLISFLIGPLGQSTAAAAANVNTWSGTSTLLPLLGAFVADTYLGRYYTIIVASLIYILGL 120
Query: 119 SMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGAD 178
++ + A++ S S+CQ N+ SCSP Q+I+F F+LYLVA+GQGGHKPC QAFGAD
Sbjct: 121 GLLAVSAVLPSASPSECQKNDEIASCSPPQLQVILFFFALYLVAVGQGGHKPCVQAFGAD 180
Query: 179 QFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALV 238
QFD Q+P E ++KSSFFNWWYF + FG T+ ++ YIQDNLNW LGFGIPC MV AL+
Sbjct: 181 QFDGQDPVEGKSKSSFFNWWYFSMCFGTLITLFILNYIQDNLNWGLGFGIPCIAMVIALL 240
Query: 239 LFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLAS---EDEA------QSSQQF 289
+FLLGTKTYR+S+ +++PF RIG+VFV A + + T +S E+ A Q S QF
Sbjct: 241 VFLLGTKTYRYSVNGDEKSPFVRIGQVFVAAARNWRTTDSSLNFEEVARGTLPHQGSLQF 300
Query: 290 KFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQG 349
+FLNKALLA PD S ++GK+C++ DVEEAKA+LRL PIWATCL YAIVFAQ +TFFTKQG
Sbjct: 301 RFLNKALLA-PDGSKDNGKVCSVSDVEEAKAVLRLFPIWATCLAYAIVFAQSSTFFTKQG 359
Query: 350 ATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAG 409
TMDR++ IPAASLQ FI + II FIPIYD IFVPI R T+ PSGITMLQRIG G
Sbjct: 360 ITMDRSLGSGFVIPAASLQSFITLAIIIFIPIYDRIFVPIARSLTRKPSGITMLQRIGTG 419
Query: 410 MLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGL 469
+ LS ISMV+AALVE+KRL+TA+EYGLID P VT+P SV WLIPQY+L G++DVFT+VGL
Sbjct: 420 IFLSCISMVIAALVEMKRLKTAEEYGLIDMPKVTVPMSVCWLIPQYILFGVSDVFTMVGL 479
Query: 470 QEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHL 529
QEFFYDQ+P EL+S GL++Y+S+ GVG FLSS L+S+I++ T+ DG SWF DNLN+AHL
Sbjct: 480 QEFFYDQVPNELRSVGLALYLSIFGVGNFLSSFLISVIDKTTNGDGQGSWFNDNLNQAHL 539
Query: 530 DYFYWLLAALSAGGLLAFLYFAKSY 554
DYFYWLLA LSA GL +LYFAKSY
Sbjct: 540 DYFYWLLAGLSAVGLATYLYFAKSY 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451992|ref|XP_004143744.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218147 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/558 (62%), Positives = 432/558 (77%), Gaps = 12/558 (2%)
Query: 12 LLPENTIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGES 71
LL E G V + G P+ R NSGGWR+AS IIGVEVAERFAYYG+SSNLI +LT QL +S
Sbjct: 5 LLDETVEGAVGYNGNPVCRSNSGGWRSASLIIGVEVAERFAYYGVSSNLINFLTDQLQQS 64
Query: 72 TATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLS 131
T TAA VN WSGTASLLPLLGAFLADSFLGR+ TIV++S +YILGL ++T+ ALI S
Sbjct: 65 TVTAAKNVNAWSGTASLLPLLGAFLADSFLGRYWTIVLSSALYILGLGLLTMSALIPSPS 124
Query: 132 SSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191
+S CQ + CSP+ FQ+I+F FSLYLV + QGGHKPC QAFGADQFD Q+P+E R+K
Sbjct: 125 TSACQQTEKSLPCSPNLFQVILFFFSLYLVGLAQGGHKPCVQAFGADQFDGQHPKESRSK 184
Query: 192 SSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSI 251
SSFFNWWYFGIS +T+ ++ Y+QDNL+W+LGFGIPC MV ALV+FLLGT+TYRFS
Sbjct: 185 SSFFNWWYFGISLATFATVNILNYVQDNLSWSLGFGIPCIAMVLALVVFLLGTRTYRFSN 244
Query: 252 KSKQRNPFARIGRVFVVAIKTRK---ATLASEDE------AQSSQQFKFLNKALLATPDV 302
+ + NPF RIGRVFV A+K + + +A E+E SS+Q +FL+KAL+ TP+
Sbjct: 245 RRDEENPFVRIGRVFVTAVKNWRVNSSEMAHEEEIRGLLPHHSSKQLRFLDKALI-TPNS 303
Query: 303 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKI 362
EDG+ C++ +VEEAKA+LRL+PIW CL +AIVF+Q +TFF KQG TMDR+IT ++
Sbjct: 304 LKEDGRACSISEVEEAKAVLRLVPIWVACLAFAIVFSQSSTFFIKQGVTMDRSITFGFEV 363
Query: 363 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAAL 422
P+ASLQ FI + I+ + IYD I +PI R FT PSGITMLQRIG GMLLS+ISMV+AAL
Sbjct: 364 PSASLQSFISLSIVISLLIYDRILIPIARNFTGKPSGITMLQRIGFGMLLSAISMVIAAL 423
Query: 423 VEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK 482
VEIKRL+TA+EYGL+D P TIP S+WWL+PQY+L G+AD FT+VGLQEFFYDQ+P L+
Sbjct: 424 VEIKRLKTAQEYGLVDMPKATIPLSIWWLVPQYVLFGVADAFTMVGLQEFFYDQVPSGLR 483
Query: 483 SFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAG 542
S GLS+Y+S+ G+G FLSS L+S I + TS DG SWF +NLN+AHLDYFYWLL LS
Sbjct: 484 SIGLSLYLSIFGIGNFLSSFLISAIEKLTSGDGKQSWFDNNLNKAHLDYFYWLLVGLSVI 543
Query: 543 GLLAFLYFAKS--YNREN 558
GL AF++ A++ YN+ N
Sbjct: 544 GLAAFVFCARTYIYNKGN 561
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460434|ref|XP_002266023.1| PREDICTED: probable peptide/nitrate transporter At1g22540 [Vitis vinifera] gi|296089505|emb|CBI39324.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/554 (64%), Positives = 434/554 (78%), Gaps = 14/554 (2%)
Query: 12 LLPENTIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGES 71
LL + VD++GRP R +SG WR+A FIIGVEVAERFAYYGI SNLI YLTG+LG+S
Sbjct: 14 LLDDTLDSAVDYKGRPARRCSSGRWRSACFIIGVEVAERFAYYGIESNLINYLTGRLGQS 73
Query: 72 TATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLS 131
ATAA VN WSGTAS+LPLLGAF+ADS++GR+ TIV+ASL+YILGL ++T+ A++ +
Sbjct: 74 MATAAQNVNTWSGTASMLPLLGAFVADSYVGRYPTIVIASLLYILGLGLLTVSAVLPSFN 133
Query: 132 SSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191
S CQ + SCSP Q+I+F F+LYLVA+GQGGHKPC QAFGADQFD +NP+E +AK
Sbjct: 134 PSHCQTDKEISSCSPPMLQVILFFFALYLVAVGQGGHKPCVQAFGADQFDGKNPEESKAK 193
Query: 192 SSFFNWWYFGISFGA--NSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRF 249
SSFFNWWYF +S G NS+IL YIQDNLNW LGFGIPC MVAAL +FLLGTKTYR+
Sbjct: 194 SSFFNWWYFCMSGGILINSSILN--YIQDNLNWGLGFGIPCTTMVAALFVFLLGTKTYRY 251
Query: 250 SIKSKQRNPFARIGRVFVVAIK---TRKATLASEDEA------QSSQQFKFLNKALLATP 300
S+K ++NPF +IG VFV AIK T ++L E+ A Q S +FKFLNKALLA P
Sbjct: 252 SVKGDEKNPFLKIGWVFVAAIKNWHTTDSSLTDEEVAHGTWPHQCSHKFKFLNKALLA-P 310
Query: 301 DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSI 360
D S EDGK+C++ DVEEAK++LRL PIWA+CL +AIVFAQ TFFTKQG TMDR+I
Sbjct: 311 DGSKEDGKVCSVSDVEEAKSVLRLFPIWASCLAFAIVFAQPPTFFTKQGVTMDRSIGSGF 370
Query: 361 KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVA 420
K+PAASLQ FI + I+ F+PIYD I VP R T+ PSGITMLQRIG GMLLS I+MV A
Sbjct: 371 KVPAASLQCFISLSILLFVPIYDRILVPTARVLTRKPSGITMLQRIGTGMLLSVIAMVFA 430
Query: 421 ALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 480
ALVE++RL+TA++YGL+D P T+P +VWWLIPQY++ G+A VFT+VGLQEFFYD++P E
Sbjct: 431 ALVEVQRLKTAEQYGLVDIPYATVPMAVWWLIPQYVIFGVAQVFTMVGLQEFFYDEVPNE 490
Query: 481 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALS 540
L+S GLS+Y+S+ GVG FLSS L+S+IN+ T DG SWF DNLN+AHLDYFYWLLA LS
Sbjct: 491 LRSVGLSLYLSIFGVGSFLSSFLISVINKTTGGDGQTSWFNDNLNQAHLDYFYWLLAGLS 550
Query: 541 AGGLLAFLYFAKSY 554
GL +LY A+SY
Sbjct: 551 TVGLSTYLYSARSY 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135651|ref|XP_002327271.1| proton-dependent oligopeptide transporter [Populus trichocarpa] gi|222835641|gb|EEE74076.1| proton-dependent oligopeptide transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/557 (64%), Positives = 433/557 (77%), Gaps = 20/557 (3%)
Query: 21 VDHQGRPIDRLNSGGWRAASFIIG-VEVAERFAYYGISSNLITYLTGQLGESTATAAAAV 79
VD+ GRP+ R SGGWR+A FIIG VEVAER AYYGISSNLITYLTG LG+STATAA V
Sbjct: 1 VDYNGRPVYRSISGGWRSAFFIIGSVEVAERSAYYGISSNLITYLTGALGQSTATAAENV 60
Query: 80 NVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGL------SMMTLLALITLLSSS 133
NVWSGT LLPLLGAF+ADSFLGR+RTIVVAS IYIL + S++TL A++ S
Sbjct: 61 NVWSGTTMLLPLLGAFIADSFLGRYRTIVVASCIYILVIIQTLGLSLLTLSAVLPSSRDS 120
Query: 134 DCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193
CQ + CSP Q+I+F FSLY+VAIGQGGHKPC QAFGADQFD Q+P+E +AKSS
Sbjct: 121 GCQTADAISLCSPDPRQVILFFFSLYIVAIGQGGHKPCVQAFGADQFDGQHPEESKAKSS 180
Query: 194 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKS 253
FFNWWYF ++ G +L++ YIQDNLNW LGFGIPC MV AL++FLLGTKTYR+ IK+
Sbjct: 181 FFNWWYFSMNSGMVVALLILNYIQDNLNWGLGFGIPCIIMVGALIVFLLGTKTYRYGIKT 240
Query: 254 KQRNPFARIGRVFVVAIKTRK----ATLASEDEA------QSSQQFKFLNKALLATPDVS 303
+R+ F RIG+VFV A++ + A E+EA Q S+QFKFLNKALL TP+ S
Sbjct: 241 AERSAFLRIGQVFVEAVRNWRTNSSAIDCREEEALGIVPHQCSEQFKFLNKALL-TPNGS 299
Query: 304 LEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIP 363
EDGK+C++ +VEEAKA+LRL+PIW TCL+Y IVFAQ +TFFTKQGATMDR+I+ + +P
Sbjct: 300 KEDGKVCSIGEVEEAKAVLRLVPIWTTCLIYGIVFAQSSTFFTKQGATMDRSISPGLDVP 359
Query: 364 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALV 423
AASLQ I + I+ IP YD + VP R T+ PSGITMLQRIG G+ LS++SMV++A+V
Sbjct: 360 AASLQSLISLSIVFLIPFYDRVLVPTARAITRKPSGITMLQRIGTGIFLSALSMVLSAVV 419
Query: 424 EIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKS 483
E+KRL+TA+EYGL+D PN TIP SV WL+PQY++ G ADVF +VGLQEFFYDQ+P EL+S
Sbjct: 420 EMKRLKTAREYGLVDLPNTTIPMSVCWLVPQYIVYGAADVFAMVGLQEFFYDQVPSELRS 479
Query: 484 FGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGG 543
GLS+Y+S+ GVG FLSS L+S I +AT DG SWFADNLNRAHLDYFYWLLA LS
Sbjct: 480 VGLSLYLSIFGVGSFLSSFLISGIEKATGGDGHGSWFADNLNRAHLDYFYWLLAGLSVVQ 539
Query: 544 LLAFLYFAKS--YNREN 558
L+AFLYF+KS YNRE
Sbjct: 540 LVAFLYFSKSYIYNREG 556
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | ||||||
| TAIR|locus:2009487 | 557 | AT1G22540 [Arabidopsis thalian | 0.935 | 0.937 | 0.578 | 4.8e-165 | |
| TAIR|locus:2009472 | 564 | AT1G22550 [Arabidopsis thalian | 0.942 | 0.932 | 0.551 | 1.7e-155 | |
| TAIR|locus:2030326 | 557 | AT1G72120 [Arabidopsis thalian | 0.965 | 0.967 | 0.546 | 1.5e-154 | |
| TAIR|locus:4515102750 | 561 | AT1G72125 [Arabidopsis thalian | 0.964 | 0.959 | 0.549 | 1.1e-153 | |
| TAIR|locus:2009542 | 565 | AT1G22570 [Arabidopsis thalian | 0.958 | 0.946 | 0.516 | 1.4e-144 | |
| TAIR|locus:2206991 | 555 | AT1G72140 [Arabidopsis thalian | 0.962 | 0.967 | 0.489 | 8e-140 | |
| TAIR|locus:2030316 | 538 | AT1G72130 [Arabidopsis thalian | 0.917 | 0.951 | 0.482 | 1.6e-127 | |
| TAIR|locus:1006230253 | 555 | AT3G54450 [Arabidopsis thalian | 0.444 | 0.446 | 0.460 | 1.5e-116 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.442 | 0.433 | 0.381 | 3.2e-102 | |
| TAIR|locus:2061843 | 583 | AT2G40460 [Arabidopsis thalian | 0.903 | 0.864 | 0.407 | 3e-101 |
| TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1606 (570.4 bits), Expect = 4.8e-165, P = 4.8e-165
Identities = 314/543 (57%), Positives = 389/543 (71%)
Query: 21 VDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVN 80
VD++ +P + +SGGWR+A FIIGVEVAERFAYYGISSNLITYLTG LG+STA AAA VN
Sbjct: 19 VDYRNKPAVKSSSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANVN 78
Query: 81 VWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNNNT 140
WSGTASLLPLLGAF+ADSFLGRFRTI+ AS +YI+G DC+ +N
Sbjct: 79 AWSGTASLLPLLGAFVADSFLGRFRTILAASALYIVGLGVLTLSAMIPS----DCKVSNL 134
Query: 141 AKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYF 200
SCSP FQ+I F +LYLVA+ QGGHKPC QAFGADQFD + P+E +AKSSFFNWWYF
Sbjct: 135 LSSCSPR-FQVITFFSALYLVALAQGGHKPCVQAFGADQFDEKEPEECKAKSSFFNWWYF 193
Query: 201 GISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNPFA 260
G+ FG +T+ V+ YIQDNL+WALGFGIPC GT TYRFSI+ + ++PF
Sbjct: 194 GMCFGTLTTLWVLNYIQDNLSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQSPFV 253
Query: 261 RIGRVFVVAIKTRKAT---LASEDE------AQSSQQFKFLNKALLATPDVSLEDGKLCT 311
RIG V+V A+K + +A+ +E SSQQF FLNKAL+A ++G C+
Sbjct: 254 RIGNVYVAAVKNWSVSALDVAAAEERLGLVSCSSSQQFSFLNKALVA------KNGS-CS 306
Query: 312 LEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLXX 371
++++EEAK++LRL PIW TCLVYA+VFAQ TFFTKQGATM+R+IT KI A+LQ
Sbjct: 307 IDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATLQSFI 366
Query: 372 XXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA 431
YD + +PI R FT P GITMLQRIG G+ LS ++MVVAALVE+KRL+TA
Sbjct: 367 SLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTA 426
Query: 432 KEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMS 491
+YGL+D P+ T+P SVWWL+PQY+L GI DVF +VGLQEFFYDQ+P EL+S GL++Y+S
Sbjct: 427 ADYGLVDSPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLALYLS 486
Query: 492 VLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWXXXXXXXXXXXXXXXXX 551
+ G+G FLSS ++SII +ATS+ G SWFA+NLN+AHLDYFYW
Sbjct: 487 IFGIGNFLSSFMISIIEKATSQSGQASWFANNLNQAHLDYFYWLLACLSFIGLASYLYVA 546
Query: 552 KSY 554
KSY
Sbjct: 547 KSY 549
|
|
| TAIR|locus:2009472 AT1G22550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
Identities = 300/544 (55%), Positives = 380/544 (69%)
Query: 1 MAISELSTTETLLPENTIG-FVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSN 59
MAI+E E L E+++ VDH+G P + ++GGWR+A +IIGVEV ERFAY+GI SN
Sbjct: 1 MAIAE---EEAALIEDSVSDSVDHRGLPAGKSSTGGWRSAWYIIGVEVGERFAYFGIGSN 57
Query: 60 LITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXX 119
LITYLTG LG+STATAA VN WSGTAS+LP+LGAF+AD++LGR+RTIVVASLIYILG
Sbjct: 58 LITYLTGPLGQSTATAAVNVNTWSGTASILPVLGAFIADAYLGRYRTIVVASLIYILGLG 117
Query: 120 XXXXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQ 179
+ + +N S P + I+F SLYLVAIGQGGHKPC QAFGADQ
Sbjct: 118 LLTLSSILILMGLSEQRQHNRNASAKPFFWVNILFFCSLYLVAIGQGGHKPCVQAFGADQ 177
Query: 180 FDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXX 239
FD +P+ER ++ SFFNWW+ +S G +I+VV+Y+QDN+NWALGFGIPC
Sbjct: 178 FDVGDPKERISRGSFFNWWFLSLSAGITLSIIVVVYVQDNVNWALGFGIPCLFMVMALAL 237
Query: 240 XXXGTKTYRFSIKSKQ--RNPFARIGRVFVVAIKTRKATLASEDEAQSSQ------QFKF 291
G KTYR+ ++ N FARIGRVF+VA K RK L + + Q +F
Sbjct: 238 FLFGRKTYRYPRGDREGKNNAFARIGRVFLVAFKNRKLKLTHSGQLEVGSYKKCKGQLEF 297
Query: 292 LNKALLATPDVSLEDG-KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA 350
L KALL P E G + C+ DVE+A AL+RLIPIW T +V I +AQY TFFTKQG
Sbjct: 298 LAKALL--PG---EGGVEPCSSRDVEDAMALVRLIPIWITSVVSTIPYAQYATFFTKQGV 352
Query: 351 TMDRTITRSIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGM 410
T+DR I +IP AS Q Y+ +F+P+ R T+ PSGITMLQRIGAGM
Sbjct: 353 TVDRKILPGFEIPPASFQALIGLSIFISVPTYERVFLPLARLITKKPSGITMLQRIGAGM 412
Query: 411 LLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQ 470
+LSS++MVVAALVE+KRLETAKE+GL+D+P+ TIP S+WW +PQYLL G+ DVF++VG Q
Sbjct: 413 VLSSLNMVVAALVEMKRLETAKEHGLVDRPDATIPMSIWWFVPQYLLLGMIDVFSLVGTQ 472
Query: 471 EFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLD 530
EFFYDQ+P EL+S GL++ +S +G+ FLS L+++IN AT ++GGDSWF NLNRAH+D
Sbjct: 473 EFFYDQVPTELRSIGLALSLSAMGLASFLSGFLITVINWATGKNGGDSWFNTNLNRAHVD 532
Query: 531 YFYW 534
YFYW
Sbjct: 533 YFYW 536
|
|
| TAIR|locus:2030326 AT1G72120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1507 (535.5 bits), Expect = 1.5e-154, P = 1.5e-154
Identities = 304/556 (54%), Positives = 376/556 (67%)
Query: 7 STTETLLPENTI-GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLT 65
+T+E L E + VDH+G R N+G WRAA FIIGVEVAERFAYYGI SNLI+YLT
Sbjct: 3 TTSEISLQEEYVTDAVDHRGLAARRSNTGRWRAALFIIGVEVAERFAYYGIGSNLISYLT 62
Query: 66 GQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXX 125
G LGESTA AAA VN WSG A+LLP+LGAF+AD+FLGR+RTI+++SLIY+LG
Sbjct: 63 GPLGESTAVAAANVNAWSGIATLLPVLGAFVADAFLGRYRTIIISSLIYVLGLAFLTLSA 122
Query: 126 XXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNP 185
N T + S F ++F FSLYLVAIGQ GHKPC QAFGADQFD ++
Sbjct: 123 FLIP--------NTTEVTSSTSSFLNVLFFFSLYLVAIGQSGHKPCVQAFGADQFDEKDS 174
Query: 186 QERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTK 245
QE+ +SSFFNWWY +S G ILVV+YIQ+ +WA GFGIPC G +
Sbjct: 175 QEKSDRSSFFNWWYLSLSAGICFAILVVVYIQEEFSWAFGFGIPCVFMVISLVLFVSGRR 234
Query: 246 TYRFSIKSKQR--NPFARIGRVFVVAIKTRKATLAS----EDEAQSS-QQFKFLNKALLA 298
YR+S + + NPF RIGRVF VA+K ++ + + E EA +S ++ F NKALL
Sbjct: 235 IYRYSKRRHEEEINPFTRIGRVFFVALKNQRLSSSDLCKVELEANTSPEKQSFFNKALLV 294
Query: 299 TPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITR 358
P+ S + DVE+A AL+RLIP+W T L YAI +AQY TFFTKQG TMDRTI
Sbjct: 295 -PNDSSQGENASKSSDVEDATALIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTMDRTILP 353
Query: 359 SIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMV 418
+KIP ASLQ+ YD +FVPI R T+ P GIT L+RIG G++LS+I+MV
Sbjct: 354 GVKIPPASLQVFIGISIVLFVPIYDRVFVPIARLITKEPCGITTLKRIGTGIVLSTITMV 413
Query: 419 VAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP 478
+AALVE KRLETAKE+GLID+P T+P S+WWLIPQYLL G+ADV+T+VG+QEFFY Q+P
Sbjct: 414 IAALVEFKRLETAKEHGLIDQPEATLPMSIWWLIPQYLLLGLADVYTLVGMQEFFYSQVP 473
Query: 479 KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWXXXX 538
EL+S GL++Y+S LGVG LSS+L+S+I+ AT D G+SWF NLNRAHLDYFYW
Sbjct: 474 TELRSIGLALYLSALGVGSLLSSLLISLIDLATGGDAGNSWFNSNLNRAHLDYFYWLLAI 533
Query: 539 XXXXXXXXXXXXXKSY 554
KSY
Sbjct: 534 VSAVGFFTFLFISKSY 549
|
|
| TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
Identities = 308/561 (54%), Positives = 375/561 (66%)
Query: 7 STTETLLPEN-TIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLT 65
+T++T L E I VDH+G R +G WRAA FIIGVEVAERFA YGI SNLI+YLT
Sbjct: 3 TTSKTSLQEEYVIDAVDHRGFSARRSITGRWRAAWFIIGVEVAERFANYGIGSNLISYLT 62
Query: 66 GQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXX 125
G LG+STA AAA VN WSG +++LPLLGAF+AD+FLGR+ TI++AS IY+LG
Sbjct: 63 GPLGQSTAVAAANVNAWSGISTILPLLGAFVADAFLGRYITIIIASFIYVLGLAFLTLSA 122
Query: 126 XXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNP 185
NNT + SP F +F FSLYLVAIGQ GHKPC QAFGADQFD +NP
Sbjct: 123 FLIP--------NNTEVTSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAFGADQFDEKNP 174
Query: 186 QERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTK 245
QE +SSFFNWWY + G ILVV+YIQ+N++WALGFGIPC G K
Sbjct: 175 QENSDRSSFFNWWYLSMCAGIGLAILVVVYIQENVSWALGFGIPCVFMVISLVLFVLGRK 234
Query: 246 TYRFSIKSKQR---NPFARIGRVFVVAIKTR--------KATLASEDEAQSS-QQFKFLN 293
+YRFS K++Q NPF RIGRVF VA K + K L + +Q S ++ FLN
Sbjct: 235 SYRFS-KTRQEEETNPFTRIGRVFFVAFKNQRLNSSDLCKVELIEANRSQESPEELSFLN 293
Query: 294 KALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMD 353
KALL P+ S E C DVE+A AL+RLIP+W T L YAI FAQY TFFTKQG TM+
Sbjct: 294 KALLV-PNDSDEGEVACKSRDVEDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQGVTME 352
Query: 354 RTITRSIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLS 413
RTI ++IP ASLQ+ YD + VPI R T++P GIT L+RIG GM+L+
Sbjct: 353 RTIFPGVEIPPASLQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMVLA 412
Query: 414 SISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFF 473
+++MVVAALVE KRLETAKEYGLID+P T+P S+WWL PQY+L G+ADV T+VG+QEFF
Sbjct: 413 TLTMVVAALVESKRLETAKEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVGMQEFF 472
Query: 474 YDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFY 533
Y Q+P EL+S GL+IY+S +GVG LSS+L+ +I+ AT D G+SWF NLNRAHLDYFY
Sbjct: 473 YSQVPTELRSLGLAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNSWFNSNLNRAHLDYFY 532
Query: 534 WXXXXXXXXXXXXXXXXXKSY 554
W KSY
Sbjct: 533 WLLAVVSAVGFFTFLFISKSY 553
|
|
| TAIR|locus:2009542 AT1G22570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1413 (502.5 bits), Expect = 1.4e-144, P = 1.4e-144
Identities = 287/556 (51%), Positives = 368/556 (66%)
Query: 12 LLPENTIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGES 71
LL + VDH+G P + ++GGWR+A FIIGVEVAERFAY+GI+ NLITYLTG LG+S
Sbjct: 10 LLEDYVSDSVDHRGFPAGKSSTGGWRSAWFIIGVEVAERFAYFGIACNLITYLTGPLGQS 69
Query: 72 TATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXX 131
TA AA VN WSGTAS+LP+LGAF+AD++LGR+RTIVVASLIYILG
Sbjct: 70 TAKAAVNVNTWSGTASILPILGAFVADAYLGRYRTIVVASLIYILGLGLLTLSASLIIMG 129
Query: 132 XXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191
+N+ +AK P + +F SLYLVAIGQGGHKPC QAFGADQFDA++P+E A+
Sbjct: 130 LSKQRNDASAK---PSIWVNTLFFCSLYLVAIGQGGHKPCVQAFGADQFDAEDPKEVIAR 186
Query: 192 SSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSI 251
SFFNWW+ +S G + +I+VV Y+Q+N+NWA GFGIPC G K YR+
Sbjct: 187 GSFFNWWFLSLSAGISISIIVVAYVQENVNWAFGFGIPCLFMVMALAIFLLGRKIYRYPK 246
Query: 252 KSKQR----NPFARIGRVFVVAIKTRKATLASE---------DEAQSSQQFKFLNKALLA 298
+ N FARIGRVFV+A K RK L ++ QS ++ LN LA
Sbjct: 247 GHHEEVNSSNTFARIGRVFVIAFKNRKLRLEHSSLELDQGLLEDGQSEKRKDRLN--FLA 304
Query: 299 TPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITR 358
+S E + C+ DV++AKAL+RLIPIW T +V I +AQY TFFTKQG T+DR I
Sbjct: 305 KAMISREGVEPCSGRDVDDAKALVRLIPIWITYVVSTIPYAQYITFFTKQGVTVDRRILP 364
Query: 359 SIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMV 418
++IPAASL Y+ +F+PI R T+ P GITMLQRIGAGM+LS +M+
Sbjct: 365 GVEIPAASLLSFVGVSILISVPLYERVFLPIARKITKKPFGITMLQRIGAGMVLSVFNMM 424
Query: 419 VAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP 478
+AALVE KRL+ A+E+GL+DKP+VT+P S+WW +PQYLL G+ D+F++VG QEFFYDQ+P
Sbjct: 425 LAALVESKRLKIAREHGLVDKPDVTVPMSIWWFVPQYLLLGMIDLFSMVGTQEFFYDQVP 484
Query: 479 KELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWXXXX 538
EL+S GLS+ +S +G+ FLS L+S+I+ AT +DG WF NLNRAH+DYFYW
Sbjct: 485 TELRSIGLSLSLSAMGLSSFLSGFLISLIDWATGKDG---WFNSNLNRAHVDYFYWLLAA 541
Query: 539 XXXXXXXXXXXXXKSY 554
K Y
Sbjct: 542 FTAIAFFAFLFISKMY 557
|
|
| TAIR|locus:2206991 AT1G72140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
Identities = 275/562 (48%), Positives = 370/562 (65%)
Query: 2 AISELSTTETLLPENTIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLI 61
+I + T + EN VD +G P R +SG W+++ F + EVAE+FAY+GI+SNLI
Sbjct: 4 SIGDNETGAIVSNENVEFSVDFRGNPSIRSSSGAWKSSGFTMCAEVAEKFAYFGIASNLI 63
Query: 62 TYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXX 121
TY T LGESTA AA+ VN+W GTA+ LPL+ +ADSFLGRFRTI++ S YI+G
Sbjct: 64 TYFTEALGESTAVAASNVNLWLGTAAFLPLIWGSIADSFLGRFRTILLTSSFYIMGLGLL 123
Query: 122 XXXXXXXXXXXXDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFD 181
C + T +SC ++I+F +LYL+A+G+GG K C +AFGADQFD
Sbjct: 124 TFSATIPSL----CNDQETRESCVSQ-VKVIIFFCALYLIALGEGGFKVCLRAFGADQFD 178
Query: 182 AQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXX 241
Q+P E +AKSS+FNW YF IS G +T LV Y+Q+NL+WALG+ IPC
Sbjct: 179 EQDPNESKAKSSYFNWLYFAISIGILTTRLVTNYVQENLSWALGYAIPCLSMMLALFLFL 238
Query: 242 XGTKTYRFSIKSKQR------NPFARIGRVFVVAIKTRKATLASED---EAQSSQQFKFL 292
G KTYRFS + R NPF RIGRVFV A + R+ T + +S+++F+FL
Sbjct: 239 LGIKTYRFSTGGEGRQGKKHDNPFVRIGRVFVAAARNRRQTPSDTCLLLPNESTKKFRFL 298
Query: 293 NKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATM 352
++A+++ C +VEEAKA+L LIPIW LV+ IVFAQ TFFTKQG+TM
Sbjct: 299 DRAVIS-----------CDSYEVEEAKAVLSLIPIWLCSLVFGIVFAQSPTFFTKQGSTM 347
Query: 353 DRTITRSIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLL 412
DR+I+ ++++PAA+LQ YD +FVPI R T+ P+GIT LQRI G+ L
Sbjct: 348 DRSISSTLQVPAATLQCFISLAILVFIPIYDRLFVPIARSITRKPAGITTLQRISTGIFL 407
Query: 413 SSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEF 472
S ISMV+AALVE+KRL+TA+++GL+D P T+P SV WLIPQY+L G++DVFT+VGLQEF
Sbjct: 408 SIISMVIAALVEMKRLKTARDHGLVDSPKATVPMSVCWLIPQYILFGVSDVFTMVGLQEF 467
Query: 473 FYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYF 532
FY ++P +L+S GL++Y+S++G+G FLSS +VS+I EATS+ G SWF++NLN+AHLDYF
Sbjct: 468 FYGEVPPQLRSMGLALYLSIIGIGNFLSSFMVSVIEEATSQSGQVSWFSNNLNQAHLDYF 527
Query: 533 YWXXXXXXXXXXXXXXXXXKSY 554
YW KSY
Sbjct: 528 YWLLACLSSLAFIFTVYFAKSY 549
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| TAIR|locus:2030316 AT1G72130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
Identities = 270/560 (48%), Positives = 355/560 (63%)
Query: 13 LPENTIGFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGEST 72
L T GF++ I SGGW++A II V++AERFAY+GI+SNLI YLTG LGEST
Sbjct: 11 LGNTTEGFLE-----IRENTSGGWKSARLIIVVQMAERFAYFGIASNLIMYLTGPLGEST 65
Query: 73 ATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXX 132
A AAA VN W+GT + LPLLG FLADS+LGRFRTI+++S +YILG
Sbjct: 66 AAAAANVNAWTGTVAFLPLLGGFLADSYLGRFRTIIISSSLYILGLGLLSFSTMIPSHQS 125
Query: 133 XDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192
D + Q +F FSLYLVAIGQGG+ PC + FGADQFD + +E R KS
Sbjct: 126 KDS-----------NQLQETIFFFSLYLVAIGQGGYNPCIKVFGADQFDGNDHKEARDKS 174
Query: 193 SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIK 252
SFFNW FG +T LV YIQ+NL+W+LGFGIP GT +YRFS +
Sbjct: 175 SFFNWLMFGNCISILTTRLVSTYIQENLSWSLGFGIPSVSMLLSLFLFLLGTTSYRFSTE 234
Query: 253 SK-QRNPFARIGRVFVVAIKTRKA-----TLASEDEA------QSSQQFKFLNKALLATP 300
++NPFARI RVF+ A+K R+ A+ +E QSS+QF+FL++A ++
Sbjct: 235 RVGKKNPFARISRVFMEALKNRRQPDLDIANANANETLLLLAHQSSKQFRFLDRAAIS-- 292
Query: 301 DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSI 360
C L ++EEAKA+LRLIPIW T +VY IV AQ TFFTKQGATMDR+I+ +
Sbjct: 293 ---------CELAEIEEAKAVLRLIPIWITSVVYTIVHAQSPTFFTKQGATMDRSISPGL 343
Query: 361 KIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVA 420
+PAA+LQ YD + VP R FTQN SGIT LQRIG G+ LS ++MV+A
Sbjct: 344 LVPAATLQSFINLSVVVFIPIYDRLLVPFARSFTQNSSGITTLQRIGTGIFLSILAMVLA 403
Query: 421 ALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 480
ALVE KRL+ A++ ++IP SVWWLIPQY++ G++D+FT+VGLQEFFY Q+P E
Sbjct: 404 ALVETKRLQAARD-------ELSIPMSVWWLIPQYVIFGVSDMFTMVGLQEFFYGQVPSE 456
Query: 481 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWXXXXXX 540
L+S G+++ +S+ G G +LSS ++S+I++ T++ G SWF ++L++AHLDYFYW
Sbjct: 457 LRSVGMALNLSIYGAGNYLSSFMISVIDKITNQYGQRSWFDNDLDQAHLDYFYWLLACLG 516
Query: 541 XXXXXXXXXXXKSY--NREN 558
KSY +R N
Sbjct: 517 FIGFAFYLWFAKSYVYSRSN 536
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| TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.5e-116, Sum P(3) = 1.5e-116
Identities = 116/252 (46%), Positives = 166/252 (65%)
Query: 286 SQQFKFLNKALLATP---DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYT 342
+ QF+FL+KA + + + +LCT+ VEE K +LRLIPIW + +++ Q
Sbjct: 269 TNQFRFLDKATIIDEIDHNKNRNPWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLN 328
Query: 343 TFFTKQGATMDRTITRSIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITM 402
TFF KQG+ MDRTI IP A+ Q YD +FVP+ R T + SGIT
Sbjct: 329 TFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITS 388
Query: 403 LQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIAD 462
LQRIG G+ +++ +MV+ LVE KRL+ A+++GLID P +P S WL+PQY+L GI D
Sbjct: 389 LQRIGVGLFVATFNMVICGLVEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGD 448
Query: 463 VFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD 522
VFTIVG+QE FYDQ+P+ ++S G +I++SV+GVG F+S+ ++S + + S+ G+ W +
Sbjct: 449 VFTIVGMQELFYDQMPETMRSIGAAIFISVVGVGSFVSTGIISTV-QTISKSHGEEWLVN 507
Query: 523 NLNRAHLDYFYW 534
NLNRAHLDY+YW
Sbjct: 508 NLNRAHLDYYYW 519
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| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
Identities = 97/254 (38%), Positives = 162/254 (63%)
Query: 286 SQQFKFLNKALLATPDVSLEDG-----KLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQ 340
+ KF +KA + + S++DG +LC++ VEE K+++ L+P+WAT +V+A V++Q
Sbjct: 289 TDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQ 348
Query: 341 YTTFFTKQGATMDRTITRSIKIPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGI 400
+T F QG TMD+ + ++ +IP+ASL L YD +P+ R FT+N G
Sbjct: 349 MSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGF 408
Query: 401 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGI 460
T LQR+G G+++S +M+ A ++E+ RL+ K + D+ + + S++W IPQYLL G
Sbjct: 409 TQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHM--SIFWQIPQYLLIGC 466
Query: 461 ADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWF 520
A+VFT +G EFFYDQ P ++S ++ ++ + +G +LS++LV+++ + T ++G W
Sbjct: 467 AEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWI 526
Query: 521 ADNLNRAHLDYFYW 534
DNLNR HLDYF++
Sbjct: 527 PDNLNRGHLDYFFY 540
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| TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
Identities = 217/532 (40%), Positives = 299/532 (56%)
Query: 19 GFVDHQGRPIDRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAA 78
G VD QGRP+ +G WRA SF++G E ER A+YGI+SNL+ YLT +L E T ++
Sbjct: 11 GTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHEDTISSVRN 70
Query: 79 VNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGXXXXXXXXXXXXXXXXDCQNN 138
VN WSG + P+ GA++ADS++GRF T +SLIY+LG C+N
Sbjct: 71 VNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLRPT-CENG 129
Query: 139 NTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWW 198
K+ S Q+ F SLY +AIG GG KP FGADQFD+ + +E++ K SFFNWW
Sbjct: 130 VCNKASS---LQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKVSFFNWW 186
Query: 199 YFGISFGANSTILVVIYIQDNLNWALGFGIPCXXXXXXXXXXXXGTKTYRFSIKSKQRNP 258
F GA L ++YIQ+NL W LG+GIP GT YR + K N
Sbjct: 187 MFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKV-IKTDNL 245
Query: 259 FARIGRVFVVAIKTRKATLASED-----------EAQSSQQ------FKFLNKALLATPD 301
+ +V + A K RK + ++ Q F+FL+KA + T
Sbjct: 246 AKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAAIKT-- 303
Query: 302 VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK 361
CT+ VE AK +L LI IW L+ + ++AQ T F KQG T+DR I + +
Sbjct: 304 ---SSRVPCTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNFQ 360
Query: 362 IPAASLQLXXXXXXXXXXXXYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAA 421
IPAASL YD FVP R T NP GIT+LQR+G G + +++ +A+
Sbjct: 361 IPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIAS 420
Query: 422 LVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKEL 481
VE+KR+ KE+ I P +P S++WL+PQY L GI DVF +GL EFFYDQ P+E+
Sbjct: 421 AVEVKRMRVIKEFH-ITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEM 479
Query: 482 KSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFY 533
+S G + + S +G+G FL+S LV++I++ TS+ GG SW +NLN + LDY+Y
Sbjct: 480 QSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYY 531
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WP01 | PTR9_ARATH | No assigned EC number | 0.6201 | 0.9318 | 0.9335 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00001825001 | SubName- Full=Chromosome chr18 scaffold_122, whole genome shotgun sequence; (572 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 558 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 2e-71 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 3e-37 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 3e-31 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 3e-16 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 2e-11 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 2e-07 | |
| PRK10207 | 489 | PRK10207, PRK10207, dipeptide/tripeptide permease | 6e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.001 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 2e-71
Identities = 117/400 (29%), Positives = 186/400 (46%), Gaps = 40/400 (10%)
Query: 104 FRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAI 163
F+TI++ S+IY +G ++TL A+ LS Q+ +F LYL+A+
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSP----------------VQVALFYIGLYLIAL 44
Query: 164 GQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWA 223
G GG KP AFGADQFD + + FF+W+YF I+ G+ ++ Y+Q N+ +
Sbjct: 45 GTGGIKPNVSAFGADQFD---ETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101
Query: 224 LGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKA-------- 275
LGFG+P M+ AL++FLLG++ Y+ I + A K RK
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161
Query: 276 ---TLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCL 332
L ++ SQ A++ P V +A+L ++PIWA +
Sbjct: 162 LYWALEKYNKRSISQTKVHTRVAVIFIPLPKFWA-LFDQQGSVWLLQAILLMLPIWAFWI 220
Query: 333 VYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRY 392
+ ++ Q T +Q TMDR I +IP AS Q F + ++ +PI D + P
Sbjct: 221 LPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYP---- 276
Query: 393 FTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLI 452
+ G+T+ QR G GM + ++ +AA+VE KR A GL P T+P + W +
Sbjct: 277 LLRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTS-PGWTVPLFILWSL 335
Query: 453 PQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSV 492
P+ + G+ + G EF D +P + S + +
Sbjct: 336 PELFISGVG----LAGALEFAPDALPSSMMSLWTLLSAAA 371
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 3e-37
Identities = 102/460 (22%), Positives = 183/460 (39%), Gaps = 50/460 (10%)
Query: 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGE----STATAAAAVNVWSGTASLLPLL 92
R I VE+ ERF+YYG+ + LI YL QLG+ A + + L P++
Sbjct: 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPII 80
Query: 93 GAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQII 152
G +LAD LG RTIV+ +++ +G ++ + ++
Sbjct: 81 GGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV----------------------SGPG 118
Query: 153 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILV 212
L L+ +G G KP + + + +P+ R + F Y GI+ G+ ++
Sbjct: 119 GLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLF---YMGINIGSLIAPII 174
Query: 213 VIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKT 272
+ N W +GFG+ M+ LV+FLLG + + NP + + V+
Sbjct: 175 TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLV 234
Query: 273 RKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCL 332
A + F + + + + + +E + LL IP++ +
Sbjct: 235 VMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAV 294
Query: 333 VYAIVFAQYTTFFTKQGATM-DRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITR 391
++ ++ Q + +R I ++P A Q II F PI ++ + R
Sbjct: 295 IFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGR 353
Query: 392 YFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWL 451
Q + I G++L+ + ++ L I GL+ SVWWL
Sbjct: 354 GNKQPSTPIKF----ALGLILAGLGFLILLLAGIWF---GGPSGLV---------SVWWL 397
Query: 452 IPQYLLCGIADVF-TIVGLQEFFYDQIPKELKSFGLSIYM 490
+ Y+L ++F + VGL P LKSF ++++
Sbjct: 398 VLSYVLQSFGELFISPVGL-SMVTKLAPPALKSFIMAMWF 436
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Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-31
Identities = 112/401 (27%), Positives = 180/401 (44%), Gaps = 66/401 (16%)
Query: 51 FAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVA 110
F+YYG+ + L+ YL LG + TA + ++ L PL+GA +ADS+LG+F+TI+
Sbjct: 1 FSYYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYL 60
Query: 111 SLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKP 170
SL+Y++G ++ +L A + L H + + L L+A+G GG KP
Sbjct: 61 SLVYVVGHALASLGA-VPSLG---------------HPLHDALSLVGLALIALGTGGIKP 104
Query: 171 CTQAFGADQFDAQNPQERRAK--SSFFNWWYFGISFGANSTILVVIY---------IQDN 219
C AFG DQF +ER+ FF+++YF I+ G S +I
Sbjct: 105 CVSAFGGDQF-----EERQLSLRFRFFSFFYFAINAG--SLFSTIITPILRGDVGCFGCQ 157
Query: 220 LNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLAS 279
+ L FG+P M AL++F +G+K Y+ K N +++ + V A+K R T S
Sbjct: 158 DCFPLAFGVPGILMTLALIVFSMGSKMYK--KKPPVGNIVSKVMKCIVFALKKRFRT-RS 214
Query: 280 EDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRL----IPIWATCLVYA 335
ED L L + K LLR+ IP+ +A
Sbjct: 215 ED--------WPRLHWLDWAAPKYLIR-------MIRSTKRLLRVLFLFIPLPM---FWA 256
Query: 336 IVFAQYTTFFTKQGATMD-RTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFT 394
+ F Q + +T Q MD I+ +Q + ++ +PI+D + P
Sbjct: 257 L-FDQQGSRWTLQATRMDGDVGLFPIQ--PDQMQAVNPLLVLILVPIFDYVVYPALAKCG 313
Query: 395 QNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYG 435
T L+++ GMLL++++ VAAL++ K T E
Sbjct: 314 TR---FTSLRKMAVGMLLAALAFAVAALLQNKINPTLPEEP 351
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[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 3e-16
Identities = 78/428 (18%), Positives = 137/428 (32%), Gaps = 56/428 (13%)
Query: 37 RAASFIIGVEVAERFAYYGISSNLITYL--TGQLGESTATAAAAVNVWSGTASLLPLLGA 94
+ + VE+ ERF+YYG+ L YL LG S A +S LL +G
Sbjct: 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGW 69
Query: 95 FLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVF 154
+ D G +T+V+ ++ +LG M A S P +
Sbjct: 70 WFGDRVWGTKKTMVLGGIVLMLGHFM-------------------LAMSIYPD-----LI 105
Query: 155 IFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI 214
+ L +A+G G K + ++ + R + F Y I+ G+ + L+
Sbjct: 106 FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLF---YMSINIGSFISPLLAG 162
Query: 215 YIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIK-----SKQRNPFARIGRVFVVA 269
I +N + +GF + MV L+ F G R S Q + ++ + A
Sbjct: 163 VIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAA 222
Query: 270 IKTR-KATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIW 328
+ ++ L LA L+ V K ++
Sbjct: 223 LALVFFCAWLMHHVVIANI---LLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFL 279
Query: 329 ATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVP 388
+ + + T+ M + + +P Q ++ P+ I+
Sbjct: 280 EAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTR 338
Query: 389 ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSV 448
+ R T + GML S + A D TS
Sbjct: 339 LGRKGKD----PTTPLKFTLGMLFCGASFLTF----------AASIWFADAGG---LTSP 381
Query: 449 WWLIPQYL 456
W+++ YL
Sbjct: 382 WFMVLIYL 389
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The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 29/212 (13%)
Query: 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFL 96
RA +++ +++ E F++YG+ + LI YLT QL A + + + P+LG FL
Sbjct: 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68
Query: 97 ADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIF 156
AD LG +++ +L+ +G ++ A P F++
Sbjct: 69 ADKVLGNRMAVMLGALLMAIGHVVLG------------------ASEIHP------SFLY 104
Query: 157 -SLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIY 215
SL ++ G G K + ++ +P+ + F+ Y + G+ + Y
Sbjct: 105 LSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGY 160
Query: 216 IQDNLNWALGFGIPCAFMVAALVLFLLGTKTY 247
Q+ +WA+GFG+ M+A LV+FL G + +
Sbjct: 161 AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHF 192
|
Length = 493 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 27/206 (13%)
Query: 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFL 96
+A I +E+ ERF YYG+ + YL QLG S A + + +S L +G +L
Sbjct: 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWL 80
Query: 97 ADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIF 156
D LG R I++ +++ +G +++ S H I+
Sbjct: 81 GDKVLGTKRVIMLGAIVLAIGYALVAW---------------------SGHDAGIVY--M 117
Query: 157 SLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI 216
+ +A+G G K + + ++ +P+ A F +Y I+ G+ ++L ++
Sbjct: 118 GMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGA----FTMYYMSINIGSFFSMLATPWL 173
Query: 217 QDNLNWALGFGIPCAFMVAALVLFLL 242
W++ F + M+ +V F
Sbjct: 174 AAKYGWSVAFALSVVGMLITVVNFAF 199
|
Length = 500 |
| >gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 44/207 (21%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 42 IIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFL 101
I VE+ ERF YYG+ L + QLG S A ++ L +G ++ D L
Sbjct: 19 IFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLL 78
Query: 102 GRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLV 161
G RTIV+ +++ +G MT ++L + + +L +
Sbjct: 79 GTKRTIVLGAIVLAIGY-FMTGMSL----------------------LKPDLIFIALGTI 115
Query: 162 AIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN 221
A+G G K + + + ++P+ A F +Y I+ G+ ++ + I D
Sbjct: 116 AVGNGLFKANPASLLSKCYPPKDPRLDGA----FTLFYMSINIGSLISLSLAPVIADKFG 171
Query: 222 WALGFGIPCAFMVAALVLFLLGTKTYR 248
+++ + + A ++ AL+++ +
Sbjct: 172 YSVTYNLCGAGLIIALLVYFACRGMVK 198
|
Length = 489 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 33/194 (17%)
Query: 51 FAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVA 110
G+ S + L LG S + A V+ +S +L LL +L+D F GR R +++
Sbjct: 12 GLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLG 70
Query: 111 SLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKP 170
L++ LG +L+ +SS + + + +L+ +G G P
Sbjct: 71 LLLFALG-------SLLLAFASS-----------------LWLLLVGRFLLGLGGGALYP 106
Query: 171 CTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPC 230
A A+ F P + R + + G GA L+ + ++L W F I
Sbjct: 107 AAAALIAEWF----PPKERGR--ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160
Query: 231 AFMV--AALVLFLL 242
+ A L+LFLL
Sbjct: 161 ILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.94 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.93 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.93 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.92 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.92 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.92 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.92 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.92 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.92 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.92 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.92 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.92 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.91 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.91 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.91 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.91 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.91 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.91 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.91 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.9 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.9 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.9 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.9 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.9 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.9 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.9 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.89 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.89 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.89 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.89 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.89 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.88 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.88 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.88 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.88 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.88 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.88 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.87 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.87 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.87 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.87 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.86 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.86 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.86 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.86 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.85 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.85 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.84 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.84 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.84 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.83 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.83 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.8 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.8 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.8 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.79 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.78 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.77 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.77 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.77 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.75 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.74 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.74 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.73 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.73 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.72 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.72 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.71 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.71 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.7 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.7 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.7 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.69 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.69 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.68 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.67 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.64 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.6 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.6 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.59 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.53 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.5 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.48 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.46 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.43 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.43 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.42 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.42 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.4 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.39 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.38 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.38 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.36 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.36 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.35 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.35 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.35 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.33 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.33 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.33 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.33 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.32 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.32 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.32 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.32 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.31 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.3 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.29 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.28 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.27 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.27 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.26 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.26 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.25 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.24 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.24 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.23 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.23 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.22 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.18 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.18 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.18 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.17 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.17 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.17 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.16 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.15 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.13 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.13 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.12 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.11 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.11 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.11 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.1 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.08 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.08 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.07 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.06 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.06 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.04 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.03 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.03 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.02 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.01 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.99 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.99 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.99 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.94 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.94 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.93 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.91 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.9 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.89 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.89 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.89 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.89 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.88 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.87 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.86 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.85 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.83 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.81 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.77 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.77 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.77 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.75 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.75 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.68 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.65 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.65 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.64 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.64 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.64 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.63 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.57 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.56 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.55 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.53 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.47 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.46 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.36 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.28 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.26 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.26 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.23 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.22 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.17 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.16 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.13 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.09 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.08 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.06 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.02 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.01 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.0 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.98 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.94 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.93 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.92 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.91 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.9 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.88 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.86 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.82 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.76 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.72 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.72 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.67 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.59 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.2 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.13 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.11 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.05 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.04 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.01 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.0 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.75 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.63 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.62 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.18 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.01 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.75 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.32 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.23 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.11 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.09 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 92.7 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 92.62 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.62 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 92.39 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 91.84 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 91.03 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 90.93 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 90.33 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 90.16 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.97 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 89.68 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 85.82 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 83.26 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 81.85 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=370.05 Aligned_cols=517 Identities=49% Similarity=0.826 Sum_probs=459.4
Q ss_pred cCCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHH
Q 008632 32 NSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVAS 111 (558)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~ 111 (558)
.+..|+...+++..+.+++.++|++...+..|+.+++|.+...+.-..+.+.....+.++++++++|-|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCCCCCC-CCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhh
Q 008632 112 LIYILGLSMMTLLALITLLSSSDCQNNNTAKSCS-PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRA 190 (558)
Q Consensus 112 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 190 (558)
++..+|..++.+....+.+.+..|........|+ ++..+...++.++.+.++|.|+..++..++.+|++++..+.+++.
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 9999999999999888888888882222333577 777888999999999999999999999999999999888888888
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHH
Q 008632 191 KSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAI 270 (558)
Q Consensus 191 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (558)
+.+.++|+++..++|..++-.+..++.+..+|.+.|.++.+++++++++++...+.|+..++.. +|+..+.+++....
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~g--sp~t~i~~Vlvaa~ 269 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRG--SPKTRIGQVLVAAA 269 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCC--CchhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999888777 89999999999998
Q ss_pred hhccccccchhhh-----------hcccchhhHHhhhhcCCC-----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 008632 271 KTRKATLASEDEA-----------QSSQQFKFLNKALLATPD-----VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVY 334 (558)
Q Consensus 271 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (558)
++++...+...+. +..+.+.+++++.....+ ....+|+.++.+++++.|..++.++++.....+
T Consensus 270 ~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~ 349 (571)
T KOG1237|consen 270 FKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIY 349 (571)
T ss_pred HHHhccCCCcchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHH
Confidence 8877654321100 112345666665554332 234568999999999999999999999999999
Q ss_pred HHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHH
Q 008632 335 AIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSS 414 (558)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~ 414 (558)
+..+.|+.++++.|..+++++.++.+.+|++.++.+..+...+..|+.+++..|+.||.+.++.+.+.+..+.+|+++..
T Consensus 350 ~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si 429 (571)
T KOG1237|consen 350 STVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSI 429 (571)
T ss_pred HHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHH
Confidence 99999999999999999999998559999999999999999999999999999999999887778999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHH
Q 008632 415 ISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLG 494 (558)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 494 (558)
+++...+..+..|...+.+ ....+++.+++|++++|++.|+++++..++..|+..+++|+++|+.+++++.+..+
T Consensus 430 ~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a 504 (571)
T KOG1237|consen 430 LSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVA 504 (571)
T ss_pred HHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHH
Confidence 9999999998777665544 22234679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCccc-cccccchhHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 008632 495 VGGFLSSILVSIINEATSRDGGDSWFA-DNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE 557 (558)
Q Consensus 495 ~g~~ig~~~~~~i~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~ 557 (558)
+|+.++..++..+...++. ..+|++ +++|.+.+.++||+++.+..+..+.+.++.++++.+
T Consensus 505 ~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~ 566 (571)
T KOG1237|consen 505 VGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYK 566 (571)
T ss_pred HHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeec
Confidence 9999999999999776544 458999 999999999999999999999999999999887654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=319.15 Aligned_cols=461 Identities=22% Similarity=0.347 Sum_probs=353.5
Q ss_pred cCCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccC----CChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHH
Q 008632 32 NSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLG----ESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTI 107 (558)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~ 107 (558)
..+++|.++.++.+++.|||+||+....+..|+..+++ +|.+++.-+.+.|....+..++++||++||++|+||++
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI 95 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 45689999999999999999999999999999998888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhh
Q 008632 108 VVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQE 187 (558)
Q Consensus 108 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~ 187 (558)
..+.+++++|.++++.+.. .....++++..++++|.|++.++.+++++|++|+++++
T Consensus 96 ~lGail~~iGh~~L~~~~~----------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr- 152 (498)
T COG3104 96 VLGAILMAIGHLVLAISSV----------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR- 152 (498)
T ss_pred HHHHHHHHHHHHHHhcccc----------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-
Confidence 9999999999999988631 12567899999999999999999999999999998876
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHH-----
Q 008632 188 RRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARI----- 262 (558)
Q Consensus 188 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 262 (558)
|..+++++|++.|+|+.++|++++++.++.||+..|.++++.+.++++.++..+++....+..+...+++.-
T Consensus 153 ---rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~ 229 (498)
T COG3104 153 ---RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPV 229 (498)
T ss_pred ---cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999988877665433321222110
Q ss_pred -HHHHHHHHhhccccccchhhhhcccchhhHHhhhhc--CC--CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 263 -GRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLA--TP--DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIV 337 (558)
Q Consensus 263 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (558)
.............. ....+..+........ .. .....++.. .. ++|||++.++.+++....||.+
T Consensus 230 ~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~-~er~r~~~~~~Lfl~~~iFW~~ 299 (498)
T COG3104 230 LGGLVVMILAALLTL------LLNQNTFSGVLLVISILIAIIYFAEAFRSPK---VF-DERRRLLAAIPLFLFAVIFWAL 299 (498)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---cH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 01111000000000 0000111110000000 00 000111111 11 5789999999999999999999
Q ss_pred hhcccceeeeecc-ccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHH
Q 008632 338 FAQYTTFFTKQGA-TMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSIS 416 (558)
Q Consensus 338 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~ 416 (558)
++|+++.+..+.. ..+++.. |+..++.+.|++|++.+++++|+..++..|..++. +. ++....+..|+++++.+
T Consensus 300 ~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~ 374 (498)
T COG3104 300 YEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLG 374 (498)
T ss_pred HHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHH
Confidence 9999987776653 3444423 58899999999999999999999999999977765 22 34556699999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHH
Q 008632 417 MVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVG 496 (558)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g 496 (558)
++++....... .++....+.+|++..|++.++||.+..|...+++++.+|+.+.+..+|++...+..|
T Consensus 375 fl~l~~~~~~~------------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~ 442 (498)
T COG3104 375 FLILLLAGIWF------------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAG 442 (498)
T ss_pred HHHHHHHHHhh------------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 98887763321 111345889999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 497 GFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 497 ~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
+.++..+.+.-.. + + +..+......+|+.++.+.++.....+...++.+
T Consensus 443 ~~l~g~va~~~~~-~--~-------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~ 491 (498)
T COG3104 443 QTLGGQVAGLTAV-T--D-------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN 491 (498)
T ss_pred HHhhceecccccc-c--c-------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9888877764321 0 0 0012233455788888888877777776666543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=307.64 Aligned_cols=467 Identities=18% Similarity=0.262 Sum_probs=326.9
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHH
Q 008632 33 SGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASL 112 (558)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 112 (558)
+++||.++.++.+++.+++++|+....++.|+++++|++..+.+++.+.+....++.++++|+++||++||||+++.+.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999993399999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 113 IYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
++.++.+++.++.+ ....++++|+++++|.|...|+..++++|++|+++++ |+
T Consensus 90 ~~~~g~~~~~~~~~-----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~ 142 (489)
T PRK10207 90 VLAIGYFMTGMSLL-----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LD 142 (489)
T ss_pred HHHHHHHHHHHhcc-----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hh
Confidence 99999999988643 1233568899999999999999999999999887532 78
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhh
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKT 272 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (558)
+++++++++.|+|..+||.+++++.++.||++.|++..+.++++++.+...++++++.+++..+++.+... .......-
T Consensus 143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~l~~~~~ 221 (489)
T PRK10207 143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSK-LLLVLLGS 221 (489)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhh-HHHHHHHH
Confidence 89999999999999999999999999999999999877666666666655554443322111112222111 10000000
Q ss_pred ccccccchhhhhcccchhhH--HhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeecc
Q 008632 273 RKATLASEDEAQSSQQFKFL--NKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGA 350 (558)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (558)
-..........+..+..... ........ .. -+.....+ ..++++.+..+.++.....+|..+.|....+..+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~f-~~~~~~~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~ 297 (489)
T PRK10207 222 VVMIFVCAWLMHNVEVANLVLIVLSIVVTI--IF-FREAFKLD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAI 297 (489)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--HH-HHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 00000000000000000000 00000000 00 00000011 224555555666677788899999998766554443
Q ss_pred -ccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008632 351 -TMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLE 429 (558)
Q Consensus 351 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 429 (558)
..+.... ++..++.+++.+|++.++++.|+.+++.++..+|.. + +++...+.+|+++.+++++.++......
T Consensus 298 ~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~-~---~~~~~k~~~G~~l~~~~~~~~~~~~~~~-- 370 (489)
T PRK10207 298 NNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK-D---LSMPMKFTLGMFLCSLGFLTAAAAGMWF-- 370 (489)
T ss_pred Hhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC-C---CCcHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 3344444 677888999999999999999999988777666531 1 4566778899999998887665432100
Q ss_pred hhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 430 TAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 509 (558)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~ 509 (558)
...+ ...+.+++++.+++.++|+.+..+...+++++.+|++++|.++|++++..++|+.+|..+......
T Consensus 371 -~~~~---------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~ 440 (489)
T PRK10207 371 -ADAQ---------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAV 440 (489)
T ss_pred -cCCC---------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0000 125678888999999999999999988999999999999999999999999999999888876631
Q ss_pred hccCCCCCCcccccc-ccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 510 ATSRDGGDSWFADNL-NRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 510 ~~~~~~~~~w~~~~~-~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
... .. |+. ....+.++|..+++.++++.++++++.|+.+
T Consensus 441 ~~~-----~~--~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~ 480 (489)
T PRK10207 441 PDN-----IT--DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLN 480 (489)
T ss_pred ccc-----cc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 00 111 1133567788888888888888877766543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=304.67 Aligned_cols=449 Identities=18% Similarity=0.271 Sum_probs=327.0
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccc--cCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHH
Q 008632 33 SGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQ--LGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVA 110 (558)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~ 110 (558)
.+++|.++.+...++++++++|++.++++.|++++ +|++..+.+++.+.+.....++++++|+++||++|||++++.+
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 35778899999999999999999999999999987 9999999999999999999999999999999933999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhh
Q 008632 111 SLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRA 190 (558)
Q Consensus 111 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 190 (558)
.++.+++.+++.++++ .+.++++|++.|+|.|+..++..++++|++|+++++ +
T Consensus 86 ~~~~~~g~~~~~~~~~------------------------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~ 138 (475)
T TIGR00924 86 GIVLMLGHFMLAMSIY------------------------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---R 138 (475)
T ss_pred HHHHHHHHHHHHhccc------------------------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---c
Confidence 9999999988887644 667888999999999999999999999999876421 2
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhH----HHHH-
Q 008632 191 KSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFAR----IGRV- 265 (558)
Q Consensus 191 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 265 (558)
|++++++++++.|+|..+||.+++++.++.||++.|.+.++.++++.+.+...++.+++.++++ ++.++ ..+.
T Consensus 139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 216 (475)
T TIGR00924 139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP--DPLSGQGKTYGKLL 216 (475)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCC--CCcchhhhhhHHHH
Confidence 8889999999999999999999999999889999999888776666666655554443322211 11100 0000
Q ss_pred ------HHHHHhhccccccchhhhhcccchhhHHh---h-hhcCC-CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 008632 266 ------FVVAIKTRKATLASEDEAQSSQQFKFLNK---A-LLATP-DVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVY 334 (558)
Q Consensus 266 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (558)
+....+.... ..+......... . ...+. ..... + ..+ ..++++....+.++.....+
T Consensus 217 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~-~~~~~~~~~~l~l~~~~~~~ 284 (475)
T TIGR00924 217 LALLAALALVFFCAWL-------MHHVVIANILLMTVTLAVIIFFFRLAFK--P--RLD-AVARNKMYAYIVLFLEAVVF 284 (475)
T ss_pred HHHHHHHHHHHHHHHH-------HhccHHHHHHHHHHHHHHHHHHHHHHHh--c--cCC-HHHHhHHHHHHHHHHHHHHH
Confidence 0000000000 000000000000 0 00000 00000 0 011 12344455577788888899
Q ss_pred HHHhhcccceeeee-ccccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHH
Q 008632 335 AIVFAQYTTFFTKQ-GATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLS 413 (558)
Q Consensus 335 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~ 413 (558)
|..+.|+.+.+..+ ...++...+ ++.+|+++++++|++.++++.|+.+++..+..||.. . ++....+..|+++.
T Consensus 285 ~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~-~---~~~~~k~~~G~~l~ 359 (475)
T TIGR00924 285 WVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK-D---PTTPLKFTLGMLFC 359 (475)
T ss_pred HHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC-C---CCcHHHHHHHHHHH
Confidence 99999998765432 233555555 678899999999999999999999877555555421 1 34445579999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHH
Q 008632 414 SISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVL 493 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~ 493 (558)
+++++.++..... . +. ..+.+++++++.+++.++||.+..|...+++++.+|++.||.++|++.+..
T Consensus 360 ~~~~~~~~~~~~~----~-~~--------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~ 426 (475)
T TIGR00924 360 GASFLTFAASIWF----A-DA--------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQ 426 (475)
T ss_pred HHHHHHHHHHHhh----c-CC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999887764210 0 00 124688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 494 GVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 494 ~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
.+|..+++.+.....+. .+...+|..++.++++..++++++.|+.++
T Consensus 427 ~~g~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 427 AMGSLLGGYLATFGAVP----------------QGVTGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred HHHHHHHHHHHHHHhcc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888776431 112346777788888778888777776554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=291.89 Aligned_cols=427 Identities=16% Similarity=0.235 Sum_probs=304.2
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
+++|.++.+++.++.+++++|+...+++.|+++++|++..+++.+.+.+.....++++++|+++||++||||+++.+.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999987999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
..++.+++..... ....+.++..+..+|.|...++.+++++|++|++++. |.+
T Consensus 86 ~~lg~lll~~~~~-----------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~s 138 (493)
T PRK15462 86 MAIGHVVLGASEI-----------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDG 138 (493)
T ss_pred HHHHHHHHHHhhc-----------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccc
Confidence 9999877664321 1223445556667888888898999999999986433 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHH--HHHHHHh
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGR--VFVVAIK 271 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 271 (558)
+++++++..|+|+.++|.+++++.+..||++.|.++++.++++++.++..++.+.+....++ ++.++... ......-
T Consensus 139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 217 (493)
T PRK15462 139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNK-KVLRATNFLLPNWGWLL 217 (493)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-CCchhhhHHHHHHHHHH
Confidence 99999999999999999999999998999999998887777777777665555433211110 22211000 0000000
Q ss_pred hccccccchhhhh-cccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeec-
Q 008632 272 TRKATLASEDEAQ-SSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQG- 349 (558)
Q Consensus 272 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 349 (558)
-.....+...... ..+....+-....... ....-+........++|||+..++.++.....||..++|.++.+....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~ 296 (493)
T PRK15462 218 VLLVATPALITVLFWKEWSVYALIVATIIG-LGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYID 296 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 0000000000000 0000000000000000 000000000001235788999999999999999999999997665443
Q ss_pred cccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008632 350 ATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLE 429 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 429 (558)
.+.+++++ ++.+|+.+.+++|++.+++++|+..++..+..||.. . ++.-.++..|+++++++++++......
T Consensus 297 ~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~-~---~s~~~Kfa~g~~~~g~~f~~l~~~~~~--- 368 (493)
T PRK15462 297 RFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR-T---VRIWGKFALGLGLMSAGFCILTLSARW--- 368 (493)
T ss_pred Hhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC-C---CCcHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 45777777 889999999999999999999999988666644321 1 345566999999999999888765321
Q ss_pred hhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 008632 430 TAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVL-GVGGFLSSILVSII 507 (558)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~~g~~ig~~~~~~i 507 (558)
..+++ ..+.+|++..+++.++||.+..|...+.+++.+|++.||..+|++.... .+|+.++..+.+..
T Consensus 369 -~~~~~---------~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 369 -SAMYG---------HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred -cCCCC---------CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00111 2677889999999999999999888899999999999999999996633 56666666665555
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=295.26 Aligned_cols=455 Identities=18% Similarity=0.267 Sum_probs=319.0
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
+++|.++.+...++++++++|++..+++.|+++++|++..+.+++.+.+.......++++|+++||++|||++++.+.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999888888777777889999999933999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
..++..++.++.+ ..+.++++|+++++|.|...++..++++|++|+++++ |.+
T Consensus 98 ~~ig~~l~~~~~~-----------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~ 150 (500)
T PRK09584 98 LAIGYALVAWSGH-----------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDG 150 (500)
T ss_pred HHHHHHHHHHhcc-----------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhh
Confidence 9999888887532 2456778899999999999999999999999876422 667
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHH------HH-
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGR------VF- 266 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~- 266 (558)
++++++++.++|..+||.+++++.++.||++.|.+.++..+++.+.+...++..++..++.+.++.+.... ..
T Consensus 151 ~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (500)
T PRK09584 151 AFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVA 230 (500)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHH
Confidence 88999999999999999999999999999999998887666666555444433332211111012211110 00
Q ss_pred HHHHhhccccccchhhhhcccchhhHH-hhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccee
Q 008632 267 VVAIKTRKATLASEDEAQSSQQFKFLN-KALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFF 345 (558)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (558)
........... .+......... ...... ........+..++++.+..+..+.....+|..+.|++..+
T Consensus 231 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l 299 (500)
T PRK09584 231 LIAIATWLLHN-----QEIARMALGVVALGIVVI------FGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSL 299 (500)
T ss_pred HHHHHHHHHhc-----chHHHHHHHHHHHHHHHH------HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 00000000000 00000000000 000000 0000001112356666666777788889999999999887
Q ss_pred eeeccc-cCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 008632 346 TKQGAT-MDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVE 424 (558)
Q Consensus 346 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 424 (558)
..+... .+.... ++..++.+++++|++.++++.|+.+++..+..+| .+..+.+.+|+++++++++..+...
T Consensus 300 ~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~ 371 (500)
T PRK09584 300 NFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGA 371 (500)
T ss_pred HHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 665432 344444 6778899999999999999999998876555554 3456789999999999998877653
Q ss_pred HHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 425 IKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILV 504 (558)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~ 504 (558)
.. ..++ ...+.+++++.+++.++||++..|...+++.+.+|+++||.++|++.....+|+.++..+.
T Consensus 372 ~~----~~~~---------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 372 KF----ANDA---------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred Hh----cCCC---------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 0011 2366778999999999999999999999999999999999999999888888888777776
Q ss_pred HHHhhhccCCCCCCccccccc-cchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008632 505 SIINEATSRDGGDSWFADNLN-RAHLDYFYWLLAALSAGGLLAFLYFAKSY 554 (558)
Q Consensus 505 ~~i~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~a~~~~i~~~~~~~~~~~~ 554 (558)
....... -..++.. .+++..+|..++.++++.+++++...|+.
T Consensus 439 ~~~~~~~-------~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~ 482 (500)
T PRK09584 439 NLMAVPD-------NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKL 482 (500)
T ss_pred HHhcccc-------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5442100 0001111 13356778778877776666666655543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=241.41 Aligned_cols=332 Identities=29% Similarity=0.558 Sum_probs=262.8
Q ss_pred HHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008632 51 FAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLL 130 (558)
Q Consensus 51 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 130 (558)
++||++...+..|+.+.+|++...+..+...+.....+.++++|+++|+++||++++..+.++..+|.+++.+.+.++..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988875431110
Q ss_pred ccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhh
Q 008632 131 SSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTI 210 (558)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 210 (558)
...+....+++..+.++|.|++.|+..++.+|++++++ ++.|.+++++++++.|+|+.+++
T Consensus 81 ----------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~ 141 (654)
T TIGR00926 81 ----------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLIST 141 (654)
T ss_pred ----------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHH
Confidence 01224457788999999999999999999999998643 23389999999999999999999
Q ss_pred hhhheeccc-------ccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhh
Q 008632 211 LVVIYIQDN-------LNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEA 283 (558)
Q Consensus 211 ~~~~~l~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (558)
++.+++.+. .+|...|.+++++++++++++...++++++.++.. ++..+..+++....+++... .
T Consensus 142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~g--s~l~~v~~vi~~a~~~~~~~------~ 213 (654)
T TIGR00926 142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKG--NIVSKVIKCIVTALRKRFST------R 213 (654)
T ss_pred HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc--cHHHHHHHHHHHHHHHhhcc------C
Confidence 999988743 36999999999999999988888888776655544 66666666665555443221 0
Q ss_pred hcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccC
Q 008632 284 QSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIP 363 (558)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (558)
+.....++++..... ...+..+++|++++.+..+....++|..+.|..+.+..|...++..++ ++.++
T Consensus 214 ~~~~~~~~ld~a~~~-----------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip 281 (654)
T TIGR00926 214 SEHWPLHWLDYAKDK-----------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQ 281 (654)
T ss_pred CcccchhHHHHhccc-----------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecC
Confidence 111113333332211 113446778999999999999999999999999988888777766666 67889
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 008632 364 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVE 424 (558)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 424 (558)
+.+++.++.+.++++.|+.+..+.+..+|...+ +++...+.+|++++++++++.+..+
T Consensus 282 ~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve 339 (654)
T TIGR00926 282 PDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQ 339 (654)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997777766664322 5678889999999999998888765
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=228.65 Aligned_cols=380 Identities=13% Similarity=0.077 Sum_probs=249.4
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
+|.+..+....+....+.....+.++.|+++++|.|..+.+++.+.+.+...++.++.|+++||+ ||||+++.+.++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence 35555566667777777777888899999999999999999999999999999999999999999 99999999999888
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++.+.+.++..... ....+.+.+++.|+++|++.+...+...+.+.|..|+++ |+++.
T Consensus 93 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 150 (399)
T PRK05122 93 LSGLLYLLAGLLAA----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVI 150 (399)
T ss_pred HHHHHHHHhhhhhc----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccch
Confidence 88776665432000 000236678999999999999999999999999999888 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccc
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKA 275 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (558)
+++..+.++|..+++.+++.+.+..||+..+.+..+..++..... ++. +++++++ ++..+..+
T Consensus 151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~--~~~~~~~~----------- 213 (399)
T PRK05122 151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RPR-PAVPPVK--GERLPFRR----------- 213 (399)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hcC-CCCCCCC--ccchhHHH-----------
Confidence 999988999999999999999888999998876665443332221 111 1111111 00000000
Q ss_pred cccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHhhcccceeeeeccccCc
Q 008632 276 TLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLR-LIPIWATCLVYAIVFAQYTTFFTKQGATMDR 354 (558)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (558)
..|+... ..........+.......+.++.. .
T Consensus 214 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 246 (399)
T PRK05122 214 -----------------------------------------VLGRVWPYGMGLALASIGFGTIATFITLYYAA------R 246 (399)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------c
Confidence 0000000 000111111111111111111111 0
Q ss_pred ccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008632 355 TITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEY 434 (558)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 434 (558)
. .. ..........+..++..++.+++.++..+| +.+..+.++..++++.....
T Consensus 247 ~----~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~----------- 299 (399)
T PRK05122 247 G----WD-GAALALTLFGVAFVGARLLFGNLINRLGGL-----------RVAIVSLLVEILGLLLLWLA----------- 299 (399)
T ss_pred c----cc-cchHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHh-----------
Confidence 1 00 111222233334444455555554443332 34566666666666555432
Q ss_pred ccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008632 435 GLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRD 514 (558)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~ 514 (558)
.+.+...+..++.|++.+...+.......+..|++.||++.|+.+....+|..+++.+.+.+.+..
T Consensus 300 -----------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~--- 365 (399)
T PRK05122 300 -----------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF--- 365 (399)
T ss_pred -----------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 233445566678888888777776667788999999999999999999999999999999887531
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 515 GGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 515 ~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
+++..|++.+++.+++.++.+++.++.++
T Consensus 366 -------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 366 -------------GYPSIFLAAALAALLGLALTWLLYRRAPR 394 (399)
T ss_pred -------------CHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 23567777888888877777666555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=224.74 Aligned_cols=378 Identities=11% Similarity=0.081 Sum_probs=243.0
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
..+.++.+....++...+.....+.+|.|+++++|.|..+.+++.+.+.+...++.++.|+++||+ ||||.++.+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~ 91 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLAC 91 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHH
Confidence 345566666666666666667778889999999999999999999999999999999999999999 9999999988877
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++.+........+. ....+.+.++++|+++|++.+...+...+.+.|.+|+++ |+++
T Consensus 92 ~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a 149 (392)
T PRK12382 92 GLAGLAYLLAAILPV----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKV 149 (392)
T ss_pred HHHHHHHHhhhcccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchh
Confidence 766544332211000 001347789999999999999988888888999999888 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhcc
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRK 274 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (558)
+++++.+.++|..++|.+++.+.+..||+..+.+..+..++.... .. +.+++++++ +...+..+..
T Consensus 150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~--~~~~~~~~~~-------- 215 (392)
T PRK12382 150 MSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF-NG---TVRKVPAHA--GERPSLWSVV-------- 215 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-HH---hccCCCCCc--ccCchHHHHH--------
Confidence 999999999999999999999988889998776554433222211 11 111111111 0000000000
Q ss_pred ccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCc
Q 008632 275 ATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDR 354 (558)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (558)
+.. .+.... . ..............+.++.. .
T Consensus 216 --------------------------------------~~~-~~~~~~-~---~l~~~~~~~~~~~~~~~~~~------~ 246 (392)
T PRK12382 216 --------------------------------------GLI-WKPGLG-L---ALQGVGFAVIGTFVSLYFAS------K 246 (392)
T ss_pred --------------------------------------HHH-HHhHHH-H---HHHHHHHhHHHHHHHHHHHh------c
Confidence 000 000110 0 00111111111111111111 0
Q ss_pred ccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008632 355 TITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEY 434 (558)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 434 (558)
.. . ..........+..++..++.+++.+++.+|+ .+..+..+..++++.....
T Consensus 247 ~~----~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----------~~~~~~~~~~~~~~~~~~~----------- 299 (392)
T PRK12382 247 GW----A-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVK-----------VAIVSLLVETVGLLLLWLA----------- 299 (392)
T ss_pred CC----c-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-----------ehHHHHHHHHHHHHHHHHc-----------
Confidence 10 0 1112222333444555566666655554432 3555666666666554432
Q ss_pred ccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008632 435 GLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRD 514 (558)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~ 514 (558)
.+.+...+..++.+++.+...+.......+..|++.||++.|+.++...+|..+++.+.+.+.|..
T Consensus 300 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~--- 365 (392)
T PRK12382 300 -----------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF--- 365 (392)
T ss_pred -----------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 233444556677788887776766677888999999999999999999999999999999997632
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 008632 515 GGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 552 (558)
Q Consensus 515 ~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~ 552 (558)
+++..|.+.+++.+++.+..++..|
T Consensus 366 -------------g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (392)
T PRK12382 366 -------------GYPSVFLAGAISAVLGIIVTILSFR 390 (392)
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHhhcc
Confidence 2345677788877777777665544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=228.29 Aligned_cols=374 Identities=12% Similarity=0.105 Sum_probs=242.0
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
|..++.+.+..+......+...+.+ +.+.+++|.+..+.+++.+.+.+...++.++.|.++||+ |||+++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 3334444444444333333332333 457789999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++.+++.++++ .+.+++.|+++|++.+...+...+++.|.+|+++ |++++
T Consensus 86 ~~~~~~~~~~~------------------------~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 135 (390)
T PRK03545 86 ASHVLSALAWN------------------------FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQAL 135 (390)
T ss_pred HHHHHHHHhcc------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHH
Confidence 99999988755 8889999999999999888999999999999888 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccc
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKA 275 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (558)
+++..+.++|..++|.+++.+.++.|||+.|++.+++.++..+......|+. ++++.++.++ .....
T Consensus 136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~----~~~~~----- 202 (390)
T PRK03545 136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL----PSEHSGSLKS----LPLLF----- 202 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCCcchHHH----HHHHH-----
Confidence 9999999999999999999998889999999988776555444333322221 1110011110 00000
Q ss_pred cccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcc
Q 008632 276 TLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRT 355 (558)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (558)
++++........+......+..+...+.++.. .
T Consensus 203 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~ 235 (390)
T PRK03545 203 ----------------------------------------RRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQ-------V 235 (390)
T ss_pred ----------------------------------------hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h
Confidence 01111111111111121222222222211111 1
Q ss_pred cccccc-cChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008632 356 ITRSIK-IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEY 434 (558)
Q Consensus 356 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 434 (558)
. +.+ ...+.......+..++..++.+++.++..+| .+..+..+...+........
T Consensus 236 ~--g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------------~~~~~~~~~~~~~~~l~~~~---------- 291 (390)
T PRK03545 236 A--GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG------------FLLIAIALLLVCLLLLLPAA---------- 291 (390)
T ss_pred c--CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh------------HHHHHHHHHHHHHHHHHHHh----------
Confidence 1 111 1122333333444455555555554333221 24444444444443322211
Q ss_pred ccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008632 435 GLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRD 514 (558)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~ 514 (558)
.+.+.+.+..++.|++.....+.....+.+..| +.|+.++|+.+....+|..+|+.+.|.+.|..
T Consensus 292 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~--- 356 (390)
T PRK03545 292 -----------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL--- 356 (390)
T ss_pred -----------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 234455566677788777666666677777776 57899999999999999999999999998632
Q ss_pred CCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008632 515 GGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKS 553 (558)
Q Consensus 515 ~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~ 553 (558)
+++..|+..+.+.+++++.++...++
T Consensus 357 -------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
T PRK03545 357 -------------GLSSIGYVGAALALAALVWSILIFRR 382 (390)
T ss_pred -------------ChhHHHHHHHHHHHHHHHHHHHHccc
Confidence 23456788888888888888777654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=227.27 Aligned_cols=388 Identities=14% Similarity=0.071 Sum_probs=245.0
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
++|..+..+..+.+.+.+..+..-...| .+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 89 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL 89 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence 4455566666666666666655544444 45678999999999999999999999999999999999 999999999988
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
..++.+++.+..+ .+.+++.|+++|++.+...+...+++.|.+|+++ |++
T Consensus 90 ~~~~~~~~~~~~~------------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 139 (406)
T PRK11551 90 FGLFSLATAQAWD------------------------FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT 139 (406)
T ss_pred HHHHHHHHHHhcc------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 8888887777644 7888999999999999999999999999999887 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhc
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTR 273 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (558)
+.++++.+.++|..+++.+++.+.+..+|+..|++.+++.++..+......++.++.++++ +..++
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~------------ 205 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAA--GAGKQ------------ 205 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhcc--Ccchh------------
Confidence 9999999999999999999988888889999998876654444333332222211100000 00000
Q ss_pred cccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccC
Q 008632 274 KATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMD 353 (558)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (558)
..+..+.. .. +.+.++........+......+....+.+.++..
T Consensus 206 --------------~~~~~~~~---------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------ 249 (406)
T PRK11551 206 --------------RAPVLRAL---------------FG-EGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG------ 249 (406)
T ss_pred --------------hhhhHHHH---------------hh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 00000000 00 0001111111111111111222222222221111
Q ss_pred cccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008632 354 RTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKE 433 (558)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 433 (558)
.... ....+.......+..++...+.+++.+++++|+ .+..+.+...++++.....
T Consensus 250 ~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~---------- 305 (406)
T PRK11551 250 QGLS---RSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR-----------VVLLIYAGILASLAALAAA---------- 305 (406)
T ss_pred CCCC---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHhc----------
Confidence 1110 112233344445555666666677666655442 2333444444444333322
Q ss_pred hccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008632 434 YGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSR 513 (558)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~ 513 (558)
.+.+...+..++.+++.....+...++..+..|++.|+++.|+.++...+|..+++.+.|.+.+..
T Consensus 306 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~-- 371 (406)
T PRK11551 306 ------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG-- 371 (406)
T ss_pred ------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--
Confidence 223334444556666666666667788899999999999999999999999999999999997531
Q ss_pred CCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008632 514 DGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 554 (558)
Q Consensus 514 ~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~ 554 (558)
++....+++.+.+.+++++..+...++.
T Consensus 372 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (406)
T PRK11551 372 -------------RSTVGVIGASIPVILVAALAALLLVSRP 399 (406)
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 1223345556666666666655554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=217.30 Aligned_cols=381 Identities=16% Similarity=0.166 Sum_probs=264.8
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
..|..++.+....|.....=+....-+| -+.+++|.|..++|+..+.|.++..++.|+...++||+ .||++++..+.+
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp-~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~l 87 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLP-PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLAL 87 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHH
Confidence 3455666666666666555555555555 46789999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
++++.+++.++.+ ++.+.++|++.|+..|.+.+...++.+++.|+++ |++
T Consensus 88 Fi~~n~l~alAp~------------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~ 137 (394)
T COG2814 88 FIVSNLLSALAPS------------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGR 137 (394)
T ss_pred HHHHHHHHHHhcc------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhh
Confidence 9999999999976 9999999999999999999999999999999999 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhc
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTR 273 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (558)
++++...+..++..+|..++.++.+.+|||..|+..+.+.+++.+..+...| +.+.+++...++.+..+.
T Consensus 138 Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~~-------- 207 (394)
T COG2814 138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLLRL-------- 207 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHHHH--------
Confidence 9999999999999999999999999999999999888888877777766666 111111100111111110
Q ss_pred cccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccC
Q 008632 274 KATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMD 353 (558)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (558)
.++.+.+..+....+.....+..|.+...++.+..
T Consensus 208 -----------------------------------------l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~---- 242 (394)
T COG2814 208 -----------------------------------------LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA---- 242 (394)
T ss_pred -----------------------------------------hcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc----
Confidence 01122333344444445455555544444333211
Q ss_pred ccccccccc-ChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008632 354 RTITRSIKI-PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAK 432 (558)
Q Consensus 354 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 432 (558)
+++. ...+.....++..++...+.+++.|+ +..+.+...+.+..+.++.+....
T Consensus 243 -----g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr------------~~~~~l~~~~~l~a~~~l~l~~~~-------- 297 (394)
T COG2814 243 -----GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR------------GPRRALIAALLLLALALLALTFTG-------- 297 (394)
T ss_pred -----CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc------------cchhHHHHHHHHHHHHHHHHHHhc--------
Confidence 1111 11233333444445555555554333 122345566666666666555442
Q ss_pred hhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008632 433 EYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATS 512 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~ 512 (558)
.+.+...+..++.+++.............+ .-++.++.+++++....++|..+|..+.|.+.|.
T Consensus 298 -------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-- 361 (394)
T COG2814 298 -------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-- 361 (394)
T ss_pred -------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 233444444455555555444444444444 3357799999999999999999999999999874
Q ss_pred CCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 513 RDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 513 ~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
.++....++.+.+.++++++.+...++.++
T Consensus 362 --------------~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 362 --------------LGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred --------------hchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 234556777888888887777776665544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-24 Score=224.37 Aligned_cols=379 Identities=14% Similarity=0.144 Sum_probs=245.5
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHH
Q 008632 40 SFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLS 119 (558)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~ 119 (558)
+.++..+++...+++.+.+.++.|+++++|+|..+.+++.+.+.+...+..++.|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5556777888888899999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred HHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHH
Q 008632 120 MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWY 199 (558)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 199 (558)
++.+.++ .+.+++.|+++|++.+...+...+.+.|.+|+++ |+++.++.+
T Consensus 92 ~~~~~~~------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~ 141 (400)
T PRK11646 92 TMAIAHE------------------------PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLM 141 (400)
T ss_pred HHHHhcc------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHH
Confidence 8877644 7888999999999998888889999999999877 999999999
Q ss_pred HHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccc
Q 008632 200 FGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLAS 279 (558)
Q Consensus 200 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (558)
...++|..+||.+++.+. ..||++.|++.++..++..+......++.++ ++++ ++. .+......
T Consensus 142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~--~~~---~~~~~~~~--------- 205 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVR--TPV---REGMTRVL--------- 205 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccc--hhh---HHHHHHHH---------
Confidence 999999999999999998 6799999998776655544333332222110 0000 000 00000000
Q ss_pred hhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccc
Q 008632 280 EDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRS 359 (558)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (558)
++++.+......+.............+. +.. +. + .
T Consensus 206 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~------~~-~-~ 240 (400)
T PRK11646 206 ------------------------------------RDKRFVTYVLTLTGYYMLAVQVMLMLPI-MVN------DI-A-G 240 (400)
T ss_pred ------------------------------------cCchHHHHHHHHHHHHHHHHHHHHhhhh-hHH------hh-c-C
Confidence 0111111111111111111111111111 111 11 0 0
Q ss_pred cccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 008632 360 IKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDK 439 (558)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (558)
.....+..................+. ..|+ .+..+.+..+.++.+++++.++..
T Consensus 241 ~~~~~g~l~~~~~~~~~~~~~~~~~~----~~~r------~~~~~~~~~~~~~~~~~~~~l~~~---------------- 294 (400)
T PRK11646 241 SPSAVKWMYAIEACLSLTLLYPIARW----SEKR------FRLEHRLMAGLLIMSLSMFPIGMV---------------- 294 (400)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH----HHHh------cchhHHHHHHHHHHHHHHHHHHHh----------------
Confidence 01111222222222222222222222 2221 112234566666666666555443
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCc
Q 008632 440 PNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSW 519 (558)
Q Consensus 440 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w 519 (558)
.+.+.+.+...+.+++.+...|...+++.+.+|++.||+++|+.++...+|..+|+.+.|.+.|..+..
T Consensus 295 ------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~----- 363 (400)
T PRK11646 295 ------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL----- 363 (400)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc-----
Confidence 223444445566777887777777789999999999999999999999999999999999998754210
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008632 520 FADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 554 (558)
Q Consensus 520 ~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~ 554 (558)
+.....+++.+.+++++++......|+.
T Consensus 364 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (400)
T PRK11646 364 -------NQPELPWMMLGIIGLITLLALYWQFSQK 391 (400)
T ss_pred -------CCcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1112345555666666655555544443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=234.83 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=130.4
Q ss_pred hHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008632 56 ISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDC 135 (558)
Q Consensus 56 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 135 (558)
......+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.+++.+++.++.+
T Consensus 185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~s--------- 254 (742)
T TIGR01299 185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQG--------- 254 (742)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhh---------
Confidence 345555667789999999999999999999999999999999999 9999999999999999988888755
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhe
Q 008632 136 QNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIY 215 (558)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 215 (558)
.+.++++|+++|+|.|+..+...++++|.+|.+. |++.+++.+.+..+|.++++.++..
T Consensus 255 ---------------~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~ 313 (742)
T TIGR01299 255 ---------------YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWA 313 (742)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999887 9999999999999999998876544
Q ss_pred ecc-------------cccchhhhHHHHHHHHHHHHH
Q 008632 216 IQD-------------NLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 216 l~~-------------~~g~~~~f~~~~~~~~~~~~~ 239 (558)
+.. ..+||+.|++.++..+++++.
T Consensus 314 il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred HHHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence 332 236898888777665554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=219.90 Aligned_cols=178 Identities=11% Similarity=0.131 Sum_probs=150.9
Q ss_pred cccCCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHH
Q 008632 30 RLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVV 109 (558)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~ 109 (558)
...++.|+.+..+....++.....|.....+|. +.+++|.++.+.++..+.+.+...++.++.|+++||+ |||+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~ 90 (394)
T PRK10213 13 AITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVIL 90 (394)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHH
Confidence 344556776666666555555555555555655 5668999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhh
Q 008632 110 ASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERR 189 (558)
Q Consensus 110 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (558)
+.++.+++.+++.++++ .+.+++.|+++|++.+...+...+++.|.+|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~------------------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~----- 141 (394)
T PRK10213 91 FAVLLTLSCLLVSFANS------------------------FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT----- 141 (394)
T ss_pred HHHHHHHHHHHHHHHCh------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH-----
Confidence 99999999988887644 8899999999999999999999999999999887
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008632 190 AKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 190 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
|+++.++...+.++|..++|.+++.+.+.+|||+.|++.+++.+++.+.
T Consensus 142 -~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 142 -VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877655544433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=224.45 Aligned_cols=162 Identities=13% Similarity=0.113 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHH
Q 008632 43 IGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMT 122 (558)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~ 122 (558)
+...+...+..+.+...++.+ .+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFG 106 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHH
Confidence 333344444334444555554 557999999999999999999999999999999999 999999999999999999888
Q ss_pred HHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHH
Q 008632 123 LLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGI 202 (558)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 202 (558)
++.+ .+.+++.|++.|++.|...+...+++.|++|+++ |++++++++.+.
T Consensus 107 ~~~~------------------------~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~ 156 (434)
T PRK11663 107 FSSS------------------------LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAH 156 (434)
T ss_pred HHhH------------------------HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 8755 7888899999999999888999999999999887 999999999999
Q ss_pred HHHHHhhhhhhheecccccchhhhHHHHHHHHHH
Q 008632 203 SFGANSTILVVIYIQDNLNWALGFGIPCAFMVAA 236 (558)
Q Consensus 203 ~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~ 236 (558)
++|..++|.+.+.+.+..|||+.|++.++..++.
T Consensus 157 ~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 157 NVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 9999999999999998899999998877654433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=224.06 Aligned_cols=357 Identities=13% Similarity=0.097 Sum_probs=231.7
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
+.+|.++.+....++...+++.+.++++.|+++++|++..+.+++.+.+.+...++.++.|+++||+ |||+++..+.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 3456677777888888899999999999999999999999999999999999999999999999998 999999999988
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
..++.++..+.++ .+.+++.|.+.+.+.+...+...+...|.+|+++ |++
T Consensus 83 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 132 (395)
T PRK10054 83 FASGFIAIPLVNN------------------------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTK 132 (395)
T ss_pred HHHHHHHHHHHhH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHH
Confidence 8888888877655 6677778888888777777888899999999877 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhc
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTR 273 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (558)
++++.+...++|..++|.+++.+.+ .+|+.+|++.+++.++..+......++.+++++++ + ++..+ ....
T Consensus 133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~--~--~~~~~-~~~~---- 202 (395)
T PRK10054 133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE--T--GSVWS-PSVL---- 202 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc--h--hhhhh-hhhh----
Confidence 9999999999999999999998875 68999999877766655443332222211111101 0 00000 0000
Q ss_pred cccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccC
Q 008632 274 KATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMD 353 (558)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (558)
.++++.+......++..............+.... .+
T Consensus 203 -----------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~ 238 (395)
T PRK10054 203 -----------------------------------------LQDKALLWFTCSGFLASFVSGAFASCISQYVMVV---AD 238 (395)
T ss_pred -----------------------------------------ccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh---cc
Confidence 0011111111111111111111111111111100 00
Q ss_pred cccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008632 354 RTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKE 433 (558)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 433 (558)
.... ....+.....+........+..++. .+|+ ++++.+..++.+..++++......
T Consensus 239 ~~~~---~~~~g~~~~~~~~~~~~~~~~~g~~----~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~--------- 295 (395)
T PRK10054 239 SDFA---EKVVAVVLPVNAAMVVSLQYSVGRR----LNAA-------NIRPLMTAGTLCFVIGLVGFIFSG--------- 295 (395)
T ss_pred cchH---HHHHHHHHHhhhhheeeehhHHHHH----HccC-------CchhHHHHHHHHHHHHHHHHHHcc---------
Confidence 1100 0011112222222222222222222 3332 233456677766666665554321
Q ss_pred hccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008632 434 YGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEAT 511 (558)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~ 511 (558)
.+.+.+.+...+.++|++...|...+++.+..|++.|+.+.+..+ ..++|..+||.+.|.+.|..
T Consensus 296 ------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~ 360 (395)
T PRK10054 296 ------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL 360 (395)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 233444555678888988877787788999999999999998765 66789999999999998743
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-24 Score=221.94 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=135.6
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 008632 58 SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQN 137 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (558)
+...+++++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..++.++.+
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~----------- 81 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAGA----------- 81 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHcC-----------
Confidence 3344457889999999999999999999999999999999999 9999999999999999988888754
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheec
Q 008632 138 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ 217 (558)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 217 (558)
.+.++++|+++|++.+...+....++.|.+|+++ |++++++.+...++|..+++.+++.+.
T Consensus 82 -------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 82 -------------YVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred -------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999877 999999999999999999999999988
Q ss_pred ccccchhhhHHHHHHHHHHHHHH
Q 008632 218 DNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 218 ~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
+..+|++.|.+.++..++..+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~ 165 (399)
T TIGR00893 143 IHFSWQWAFIIEGVLGIIWGVLW 165 (399)
T ss_pred HhCCchHHHHHHHHHHHHHHHHh
Confidence 88899999988776655544443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=214.99 Aligned_cols=355 Identities=13% Similarity=0.054 Sum_probs=230.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHH
Q 008632 44 GVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTL 123 (558)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~ 123 (558)
...++..++.......+|.|.. +++.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555566677766 5899999999999999999999999999999999 9999999999988888888777
Q ss_pred HHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHH
Q 008632 124 LALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGIS 203 (558)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 203 (558)
..... ..+.+.+++.|+++|++.+...+...+++.|.+|+++ |+++.++.+...+
T Consensus 84 ~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 138 (365)
T TIGR00900 84 VALLG-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRS 138 (365)
T ss_pred HHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHH
Confidence 65200 0137889999999999999999999999999999877 9999999999999
Q ss_pred HHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhh-HHHHHHHHHHhhccccccchhh
Q 008632 204 FGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFA-RIGRVFVVAIKTRKATLASEDE 282 (558)
Q Consensus 204 ~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 282 (558)
+|..++|.+++.+.+..||++.|++.++..+++.+..+..+.+.++++ ++ ++.+ +..+...
T Consensus 139 ~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~--------------- 200 (365)
T TIGR00900 139 LFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-EI--QALSNAVLRDTR--------------- 200 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-cc--cccchhHHHHHH---------------
Confidence 999999999999998899999998877665555444333222111110 11 1000 0000000
Q ss_pred hhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHH-HHHHHHHHHHHhhcccceeeeeccccCcccccccc
Q 008632 283 AQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIP-IWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK 361 (558)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (558)
+..+ ...+.+.+..... .+................+..+..+.+ .
T Consensus 201 ----------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 246 (365)
T TIGR00900 201 ----------EGIK-----------------FVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRG-------S 246 (365)
T ss_pred ----------hHHH-----------------HHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc-------h
Confidence 0000 0001111111111 111111111111111111111100000 1
Q ss_pred cChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 008632 362 IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPN 441 (558)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (558)
...+.......+..++..++.+++.++..+ ++.+..+..+.++++.......
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~----------------- 298 (365)
T TIGR00900 247 THYGWVLAAFGLGALLGALLLGLLGRYFKR-----------MALMTGAIFVIGLAILVVGLTP----------------- 298 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch-----------hHHHHHHHHHHHHHHHHHHhhc-----------------
Confidence 112233334444455555555554333222 2345555666666655544431
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 442 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 509 (558)
Q Consensus 442 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~ 509 (558)
+ +.+...+..++.+++.+...+...+++.+..|++.|+++.|+.++...++..+++.+.|.+.|
T Consensus 299 ---~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 299 ---P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred ---h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 355666777888888888888788899999999999999999999999999999999999976
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=215.79 Aligned_cols=352 Identities=12% Similarity=0.008 Sum_probs=212.1
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 008632 58 SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQN 137 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (558)
....+.+++++|+|..+.+++.+.+.+++.++.++.|+++||+ |||++++.+.+....+.. +... .
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~-~----------- 76 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLD-P----------- 76 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHH-h-----------
Confidence 3344456779999999999999999999999999999999999 999987655544444332 2222 0
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheec
Q 008632 138 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ 217 (558)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 217 (558)
.+++.+++.|+++|+|.+. ........+|.+|+++ |++++++.+.+.++|..+++++++.+.
T Consensus 77 -----------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~ 138 (368)
T TIGR00903 77 -----------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIY 138 (368)
T ss_pred -----------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1378899999999999986 4555566699999877 999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhh
Q 008632 218 DNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALL 297 (558)
Q Consensus 218 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (558)
+..|||+.|++.+++.++..+.++...|+.++++++. ....+..+..
T Consensus 139 ~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~--~~~~~~~~~~------------------------------- 185 (368)
T TIGR00903 139 TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEG--FGFKDAVKEF------------------------------- 185 (368)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC--cchHHHHHHH-------------------------------
Confidence 9999999998866655444443333222211111000 0000000000
Q ss_pred cCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHH
Q 008632 298 ATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIIT 377 (558)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (558)
.+-.++++.+......++....++....+.++++... .. +...+....+... .
T Consensus 186 --------------~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~------g~----s~~~~~~~~l~~~---~ 238 (368)
T TIGR00903 186 --------------GALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPA------GL----EDIAGDAVALAIL---A 238 (368)
T ss_pred --------------HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CC----ChHHHHHHHHHHH---H
Confidence 0001122233333444455555555555566555321 11 1111121111111 1
Q ss_pred HHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHH
Q 008632 378 FIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLL 457 (558)
Q Consensus 378 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (558)
.......+.|+..||. + +........++.++.+...+.. .+.+..+....+
T Consensus 239 g~~g~~~~~d~~~r~~-~------r~~~~~~~~~~~a~~~~~~~~~----------------------~~~~~~~~~~~l 289 (368)
T TIGR00903 239 GLIGVAVIPDRVARAG-L------RSIYIRAAALLIAAFFLALAFE----------------------LNRLALFAFIGI 289 (368)
T ss_pred HHHHHHHhhHHhhhhh-h------HHHHHHHHHHHHHHHHHHHHHc----------------------cccHHHHHHHHH
Confidence 1122233434333321 1 1111222233333333333321 111222333344
Q ss_pred HHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHH
Q 008632 458 CGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLA 537 (558)
Q Consensus 458 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a 537 (558)
.+++.....+..+++.+|..|++.||+++|+.+...++++.+++.+.+.+.. +....|.+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~------------------~~~~~f~~~~ 351 (368)
T TIGR00903 290 AGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS------------------SAEAYFTFLA 351 (368)
T ss_pred HHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc------------------CHHHHHHHHH
Confidence 4444444455566889999999999999999999999999999998887751 2234577777
Q ss_pred HHHHHHHHHHH
Q 008632 538 ALSAGGLLAFL 548 (558)
Q Consensus 538 ~~~~i~~~~~~ 548 (558)
...+++++..+
T Consensus 352 ~~~~i~~~~~~ 362 (368)
T TIGR00903 352 ILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-23 Score=218.15 Aligned_cols=174 Identities=15% Similarity=0.209 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccC---CChHHHHHHH---HHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLG---ESTATAAAAV---NVWSGTASLLPLLGAFLADSFLGRFRTIVVASL 112 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~~~---~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 112 (558)
+....+..+++.+.... .+....++.++++ .+..+.+... +...++..++.++.|+++||+ |||+++..+.+
T Consensus 24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~ 101 (432)
T PRK10406 24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 33333445555555544 5666667888874 5555444433 344444458999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 113 IYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
++.++.++++++++..... ......+++.|+++|+|.|+..+...++++|.+|+++ |+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg 159 (432)
T PRK10406 102 MMCFGSLVIACLPGYETIG----------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KG 159 (432)
T ss_pred HHHHHHHHHhhcCCchhHH----------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------cc
Confidence 9999999998865411000 0123568899999999999999999999999999988 99
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheec--------ccccchhhhHHHHHHHHHH
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQ--------DNLNWALGFGIPCAFMVAA 236 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~~~ 236 (558)
++.++.+.+.+.|..+++++...+. +.+|||++|++.++..++.
T Consensus 160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 9999988888888888876654433 2579999999877655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=219.03 Aligned_cols=382 Identities=14% Similarity=0.075 Sum_probs=242.2
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHH-----HHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHH
Q 008632 38 AASFIIGVEVAERFAYYGISSNLITYLTGQLGESTAT-----AAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASL 112 (558)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 112 (558)
....+....++...++....+.+|.|++ ++|.+..+ .+++.+.+.+...++.++.|+++||+ |||+++..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 92 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence 3444445666677777777788888876 58888654 48888999999999999999999998 99999999998
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 113 IYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
+..++.+++.+.++ .+.+++.|++.|++.+ ..+.....+.|.+|+++ |+
T Consensus 93 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~ 141 (408)
T PRK09874 93 GMGIVMVLMGLAQN------------------------IWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SG 141 (408)
T ss_pred HHHHHHHHHHHHhh------------------------HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hh
Confidence 88888888777644 7889999999999855 45777778889998877 99
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhh
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKT 272 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (558)
++.++.+...++|..++|.+++.+.+..+|++.|++.+++.++..+......++..+ +.++ +...+..+.. ...
T Consensus 142 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~-~~~-- 215 (408)
T PRK09874 142 WALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ-PVSK--KEMLHMREVV-TSL-- 215 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc-cccc--hhhhHHHHHH-HhC--
Confidence 999999999999999999999999888899999988777655554443332222111 1011 0000000000 000
Q ss_pred ccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHH-HHHHHHHHHHHhhcccceeeeeccc
Q 008632 273 RKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIP-IWATCLVYAIVFAQYTTFFTKQGAT 351 (558)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
++++....... ..............++.+..... .
T Consensus 216 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 251 (408)
T PRK09874 216 -------------------------------------------KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELA-G 251 (408)
T ss_pred -------------------------------------------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 00111111111 11111111111111111111100 0
Q ss_pred cCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 352 MDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA 431 (558)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 431 (558)
.... .....+.......+..++..+..+++.+|+.+| +.+..+..+..+.++.....
T Consensus 252 ~~~~----~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~-------- 308 (408)
T PRK09874 252 NVSN----IAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----------KILITALIFSVLLLIPMSFV-------- 308 (408)
T ss_pred cchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHHHHHHh--------
Confidence 0000 000011222223344445555556665544443 23555555555544443332
Q ss_pred hhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008632 432 KEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEAT 511 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~ 511 (558)
.+.+.+.+..++.+++.+...+...+...+..|++.||+.+++.+....+|..+|+.+.+.+.+..
T Consensus 309 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~ 374 (408)
T PRK09874 309 --------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY 374 (408)
T ss_pred --------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 233445556667788888877777788888999999999999999999999999999999997531
Q ss_pred cCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 512 SRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 512 ~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
++...|.+.+++.+++.+..++..|+.+
T Consensus 375 ----------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 402 (408)
T PRK09874 375 ----------------GFRAVFLVTAGVVLFNAVYSWNSLRRRR 402 (408)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2356788888888888877776655544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=222.79 Aligned_cols=402 Identities=13% Similarity=0.117 Sum_probs=228.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCC
Q 008632 68 LGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPH 147 (558)
Q Consensus 68 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (558)
++.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.+++.++.++++++...... ...++
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~------------~~~~~ 116 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTS------------IGPDN 116 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccc------------ccccc
Confidence 388999999999999999999999999999999 99999999999998888877764210000 00011
Q ss_pred chhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheec--------cc
Q 008632 148 HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DN 219 (558)
Q Consensus 148 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--------~~ 219 (558)
....+.++++|+++|++.|+..+...++++|++|+++ |++++++.+.+..+|..+++++++.+. +.
T Consensus 117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 190 (479)
T PRK10077 117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190 (479)
T ss_pred hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 1335678899999999999999999999999999988 999999999999999999887765432 45
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcC
Q 008632 220 LNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLAT 299 (558)
Q Consensus 220 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (558)
.|||+.|++.++..++..+..+. .|+.++...++ +..++..+..... .+ . .+.....+......
T Consensus 191 ~gWr~~f~~~~~~~~~~~~~~~~-l~~s~~~l~~~--~~~~~~~~~~~~~-~~--~----------~~~~~~~~~~~~~~ 254 (479)
T PRK10077 191 DGWRYMFASEAIPALLFLMLLYF-VPETPRYLMSR--GKQEQAEGILRKI-MG--N----------TLATQALQEIKHSL 254 (479)
T ss_pred CChHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHc--CCHHHHHHHHHHH-cC--C----------hhHHHHHHHHHHHH
Confidence 68999999877665554443332 22211100001 1111111111100 00 0 00000000000000
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceee--eeccccCccccccccc-ChhhhhhhhHHHHH
Q 008632 300 PDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFT--KQGATMDRTITRSIKI-PAASLQLFIGIGII 376 (558)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 376 (558)
.++.+..+..+...............+.+...... .......... +... ..........+..+
T Consensus 255 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~--g~~~~~~~~~~~~~~~~~~ 320 (479)
T PRK10077 255 ------------DHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTL--GASTDIALLQTIIVGVINL 320 (479)
T ss_pred ------------HHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHHH
Confidence 00000000110000000000000011111110000 0000000011 1111 11222333344445
Q ss_pred HHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHH
Q 008632 377 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYL 456 (558)
Q Consensus 377 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (558)
+..++..++.++++||. .+..+.++++++++.++.... ......+......
T Consensus 321 i~~~~~g~l~dr~g~r~-----------~~i~~~~~~~v~~~~l~~~~~------------------~~~~~~~~~~~~~ 371 (479)
T PRK10077 321 TFTVLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFY------------------TQAPGIVALLSML 371 (479)
T ss_pred HHHHHHHHHHHHhcChH-----------HHHHhHHHHHHHHHHHHHHHh------------------cCcccHHHHHHHH
Confidence 55566666656555543 467777777777666554311 0111122333344
Q ss_pred HHHHHHHHH-hhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHH
Q 008632 457 LCGIADVFT-IVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWL 535 (558)
Q Consensus 457 l~g~g~~~~-~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 535 (558)
+++.+.+.. .+..+.++.|.+|++.|+.++|+.+..+++++.+++.+.+.+.+. +|+.++ .+....|++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~-------~~~~~~---~~~~~~~~~ 441 (479)
T PRK10077 372 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKN-------SWLVAH---FHNGFSYWI 441 (479)
T ss_pred HHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-------cchhhh---ccCccHHHH
Confidence 445555433 355667899999999999999999999999999999888877531 111111 111345677
Q ss_pred HHHHHHHHHHHHHHhhcccccC
Q 008632 536 LAALSAGGLLAFLYFAKSYNRE 557 (558)
Q Consensus 536 ~a~~~~i~~~~~~~~~~~~~~~ 557 (558)
.++++++++++.+++.+|.+++
T Consensus 442 ~~~~~~~~~~~~~~~~~e~~~~ 463 (479)
T PRK10077 442 YGCMGVLAALFMWKFVPETKGK 463 (479)
T ss_pred HHHHHHHHHHHHHhccccCCCC
Confidence 7777788878777777777654
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-23 Score=219.63 Aligned_cols=394 Identities=11% Similarity=0.073 Sum_probs=239.5
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.+.++.+....++..+..+.+.+.+|.+.+ ++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 345666667777777777777788887765 6999999999999999999999999999999999 99999999988888
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++.+++.++++ .+.+++.|+++|++.+...+...+++.|.+|+++ |+++.
T Consensus 87 ~~~~~~~~~~~------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 136 (471)
T PRK10504 87 LGSLFCALSGT------------------------LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAM 136 (471)
T ss_pred HHHHHHHHhCC------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence 88888776643 7788999999999999999999999999999877 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHH---HHHHH--HH
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIG---RVFVV--AI 270 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~ 270 (558)
++.+...++|..++|.+++.+.++.|||+.|.+......+..+......++.+.++.+. +...... ..... ..
T Consensus 137 ~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~ 214 (471)
T PRK10504 137 TFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRF--DLSGFLLLAVGMATLTLAL 214 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC--ChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999899999999877665555444433333322111111 1100000 00000 00
Q ss_pred hhccccccchhhhhcccchhhH---------HhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHH-HHHHHHHHHHHhhc
Q 008632 271 KTRKATLASEDEAQSSQQFKFL---------NKALLATPDVSLEDGKLCTLEDVEEAKALLRLIP-IWATCLVYAIVFAQ 340 (558)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 340 (558)
.+.+.. ........... ...++... . ++....+..+.|.....+. .++....+. ....
T Consensus 215 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~~ 282 (471)
T PRK10504 215 DGSKGL-----GLSPLAIAGLVAVGVVALLLYLLHARNN---N---RALFSLKLFRTRTFSLGLAGSFAGRIGSG-MLPF 282 (471)
T ss_pred hcCCcC-----CcchHHHHHHHHHHHHHHHHHHHHHhcC---C---CCccCHHHhcccchHHHHHHHHHHHHHHH-HHHH
Confidence 000000 00000000000 00000000 0 0110111111222222221 111111111 1111
Q ss_pred ccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHH
Q 008632 341 YTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVA 420 (558)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 420 (558)
...++.+...+.+ ....+.......+..+...++..++.+|+++| +.+..+..+..+.....
T Consensus 283 ~~~~~~~~~~g~~-------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~ 344 (471)
T PRK10504 283 MTPVFLQIGLGFS-------PFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR-----------RVLVATTLGLALVSLLF 344 (471)
T ss_pred HHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHH
Confidence 1111211100000 11112222333333444445556654444433 34566666666555544
Q ss_pred HHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHH
Q 008632 421 ALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLS 500 (558)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig 500 (558)
.... ...+.+......++.|++.+...+....++.+..|++.++.++|+.++.+.+|..+|
T Consensus 345 ~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig 405 (471)
T PRK10504 345 MLVA-------------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIG 405 (471)
T ss_pred Hhcc-------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHH
Confidence 4321 012233334455666777777766777888899999999999999999999999999
Q ss_pred HHHHHHHhhhcc
Q 008632 501 SILVSIINEATS 512 (558)
Q Consensus 501 ~~~~~~i~~~~~ 512 (558)
+.+.+.+.+..+
T Consensus 406 ~~i~g~ll~~~g 417 (471)
T PRK10504 406 VTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHhh
Confidence 999999877544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-23 Score=214.63 Aligned_cols=359 Identities=14% Similarity=0.103 Sum_probs=232.0
Q ss_pred hhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008632 53 YYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSS 132 (558)
Q Consensus 53 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 132 (558)
++.+.+.+| .+++++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.++++++++
T Consensus 25 ~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~~------ 96 (393)
T PRK09705 25 LTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYPQ------ 96 (393)
T ss_pred hhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCcc------
Confidence 344544454 56789999999999999999999999999999999999 9999999999999999999999866
Q ss_pred ccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhh
Q 008632 133 SDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILV 212 (558)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 212 (558)
.+.++++|+++|+|.+...+.....+.|.+| ++ |+++.+++..+.++|..+++.+
T Consensus 97 ------------------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~ 151 (393)
T PRK09705 97 ------------------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAI 151 (393)
T ss_pred ------------------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999987 66 9999999999999999999999
Q ss_pred hheecccc-cchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhh
Q 008632 213 VIYIQDNL-NWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKF 291 (558)
Q Consensus 213 ~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (558)
++++.++. +||..+.+.++..++....++...++ ++.+++ ++..+
T Consensus 152 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~------------------------------ 197 (393)
T PRK09705 152 TPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR---EVASSH-KTTTT------------------------------ 197 (393)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC---CCcccc-CCCcC------------------------------
Confidence 99887765 79988765544444333333222211 111110 00000
Q ss_pred HHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhh
Q 008632 292 LNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFI 371 (558)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (558)
..+. .++++.+...+...+....+.....+.+.++.+ ...+ ....+......
T Consensus 198 --------------~~~~-----l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s-------~~~ag~~~~~~ 249 (393)
T PRK09705 198 --------------PVRV-----VFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE--IGAS-------AQYSGSLLALM 249 (393)
T ss_pred --------------Cccc-----ccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC-------hhhhhHHHHHH
Confidence 0000 001112111222222223333333333333321 1111 11123334444
Q ss_pred HHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHH
Q 008632 372 GIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWL 451 (558)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (558)
.+..++..++.+++.++..+| +.+..++.+..++++.+.... .+...+
T Consensus 250 ~i~~i~g~~~~g~l~~r~~~~-----------~~~~~~~~l~~~~~~~~~~~~---------------------~~~~~~ 297 (393)
T PRK09705 250 TLGQAAGALLMPAMARHQDRR-----------KLLMLALVLQLVGFCGFIWLP---------------------LQLPVL 297 (393)
T ss_pred HHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHHHHHcc---------------------chHHHH
Confidence 455555566665554433332 345666666666655444321 111111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhH
Q 008632 452 IPQYLLCGIADVFTIVGLQEFFYDQI-PKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLD 530 (558)
Q Consensus 452 ~~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~ 530 (558)
. ..+.+++.+...+.......+.. |++.+++..|+.+....++..++|.+.+++.|..+ ++.
T Consensus 298 ~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g---------------~~~ 360 (393)
T PRK09705 298 W--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG---------------NYL 360 (393)
T ss_pred H--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------Cch
Confidence 1 23445565555554444555666 57889999999999999999999999999987532 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 531 YFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 531 ~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
..|.+.++++++..++.+.+.++++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 361 MDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 4566777777777777777777664
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=219.97 Aligned_cols=387 Identities=15% Similarity=0.091 Sum_probs=238.1
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
|..+..+....+......-.+...+| .+.+++|.+..+.+++.+.|.++..++.++.|+++||+ |||++++.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 33334444444444444433334444 45678999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCC-CCCChhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQF-DAQNPQERRAKSSF 194 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~ 194 (558)
++.++++++++ .+.++++|+++|+|.++..+.....+.+.+ |+++ |+++
T Consensus 83 ~~~~~~~~a~~------------------------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~ 132 (495)
T PRK14995 83 LASLAAAFSPT------------------------ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMA 132 (495)
T ss_pred HHHHHHHHcCC------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHH
Confidence 99999998755 888999999999999998888888787776 4455 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHH--------
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVF-------- 266 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 266 (558)
++++....++|..+||.+++.+.++.|||+.|++...+.++..+......|+.++++ + ++.+.....+
T Consensus 133 ~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~--~~~d~~g~~~~~~~~~~l 208 (495)
T PRK14995 133 LGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--D--QPLNLGHALMLIVAILLL 208 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--C--CCCChHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999877665555444444333321111 1 1111111110
Q ss_pred HHHHhhccccccchhhhhcccchh--h---------HHhhhhcCCCCCCCCCCCCchhhHHHHHHHH-HHHHHHHHHHHH
Q 008632 267 VVAIKTRKATLASEDEAQSSQQFK--F---------LNKALLATPDVSLEDGKLCTLEDVEEAKALL-RLIPIWATCLVY 334 (558)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 334 (558)
....++. .+...... . +......+. ..+.+..+ .+-. +.|... .....+.....+
T Consensus 209 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~f~~~e~-~~~~p~~~--~~lf-~~~~~~~~~~~~~~~~~~~ 275 (495)
T PRK14995 209 VYSAKTA---------LKGFLSLWVTSLTLLTGALLLGLFIRTQL-AASRPMID--MRLF-THRIILSGVVMAMTAMITL 275 (495)
T ss_pred HHHHHhc---------cccCCchHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcC--HHHh-CCcccHHHHHHHHHHHHHH
Confidence 0011100 00000000 0 000000000 00001101 1111 111111 111111111111
Q ss_pred HHHhhcccceeeeeccccCccccccc-ccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHH
Q 008632 335 AIVFAQYTTFFTKQGATMDRTITRSI-KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLS 413 (558)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~ 413 (558)
.......+.++ + ... ++ ....+.......+...+..++.+++.+++++| +.+..|+++.
T Consensus 276 ~~~~~~~~~~l-q------~v~--g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~g~~~~ 335 (495)
T PRK14995 276 VGFELLMAQEL-Q------FVH--GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----------LVATGGMALS 335 (495)
T ss_pred HHHHHHHHHHH-H------HHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHH
Confidence 11111111111 1 111 11 11223334444555666677777775555443 2466777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHH
Q 008632 414 SISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVL 493 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~ 493 (558)
.+++..+.... ...+.+......++.|+|.+...+.....+.+..|++.++.+.++.++.+
T Consensus 336 ~~~~~~l~~~~-------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 396 (495)
T PRK14995 336 ALSFYGLAMTD-------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAY 396 (495)
T ss_pred HHHHHHHHHhc-------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHH
Confidence 76665544331 01233444556778899988887777778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 008632 494 GVGGFLSSILVSIINEA 510 (558)
Q Consensus 494 ~~g~~ig~~~~~~i~~~ 510 (558)
.+|+.+|+.+.+.+.+.
T Consensus 397 ~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 397 ELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=220.17 Aligned_cols=386 Identities=11% Similarity=-0.006 Sum_probs=238.2
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGL 118 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~ 118 (558)
........++..++.......+|.+.+ +++.+..+.+++.+.+.+...++.++.|+++||+ |||+.+..+.++..++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~ 96 (417)
T PRK10489 19 FRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGF 96 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHH
Confidence 333444455555555445555666654 6788999999999999999999999999999999 99999998888777777
Q ss_pred HHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHH
Q 008632 119 SMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWW 198 (558)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 198 (558)
.++....... ..+.+.+++.|+++|++.+...++..+.+.|.+|+++ |+++.++.
T Consensus 97 ~~~~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 151 (417)
T PRK10489 97 IGLALNAFLP-------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAIT 151 (417)
T ss_pred HHHHHHHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHH
Confidence 6655321100 0236778889999999988888888899999999877 99999999
Q ss_pred HHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhcccccc
Q 008632 199 YFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLA 278 (558)
Q Consensus 199 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (558)
+...++|..+||.+++.+.+..+|++.|++.++..+++.+..+.. ++.++++.++ +++.++..+.....
T Consensus 152 ~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~-~~~~~~~~~~~~~~--------- 220 (417)
T PRK10489 152 MLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPR-EHPLRSLLAGFRFL--------- 220 (417)
T ss_pred HHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCccc-ccchHHHHHHHHHH---------
Confidence 999999999999999999888899999988776665554443332 2111111000 01111110000000
Q ss_pred chhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCccccc
Q 008632 279 SEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITR 358 (558)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (558)
.+.+......................+. +.. +..+
T Consensus 221 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~------~~~g- 255 (417)
T PRK10489 221 -------------------------------------LASPVVGGIALLGGLLTMASAVRVLYPA-LAD------EVWQ- 255 (417)
T ss_pred -------------------------------------HcChHHHHHHHHHHHHHHHHhHHHhhHH-HHH------hccC-
Confidence 0011111111111111111111111111 111 1111
Q ss_pred ccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 008632 359 SIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLID 438 (558)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (558)
.-....+.+.....+..++...+.+++ .+|. ++.+.+..+.++.+++++.+...
T Consensus 256 ~~~~~~g~~~~~~~~g~~ig~~~~~~l----~~~~-------~~~~~l~~~~~~~~~~~~~~~~~--------------- 309 (417)
T PRK10489 256 MGAAQIGLLYAAVPLGAALGALTSGWL----AHSA-------RPGLLMLLSTLGSFLAVGLFGLM--------------- 309 (417)
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHh----hhcc-------CcchHHHHHHHHHHHHHHHHHcc---------------
Confidence 001122333344444555555555544 2321 12234556666666665554432
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 008632 439 KPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDS 518 (558)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~ 518 (558)
.+++...+..++.+++.+...+...+++.+..|++.||+++|++++.+.+|..+|+.+.|.+.+..+
T Consensus 310 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g------ 376 (417)
T PRK10489 310 -------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT------ 376 (417)
T ss_pred -------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc------
Confidence 2344555666777777777666666788999999999999999999999999999999999986432
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 519 WFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 519 w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
....++..+++.++..++.+...+++++
T Consensus 377 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 377 ----------PVASASASGFGLLIIGVLLLLVLGELRR 404 (417)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1234555666666655555555555543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=222.36 Aligned_cols=404 Identities=12% Similarity=0.147 Sum_probs=226.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCch
Q 008632 70 ESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHF 149 (558)
Q Consensus 70 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (558)
.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.+++.+... ..
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~---------------------~~ 125 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF---------------------AL 125 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc---------------------cc
Confidence 3389999999999999999999999999999 9999999999999999888876533 12
Q ss_pred hHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhh---heecccccchhhh
Q 008632 150 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV---IYIQDNLNWALGF 226 (558)
Q Consensus 150 ~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~g~~~~f 226 (558)
+.+.++++|+++|+|.+...+...++++|.+|+++ |++++++++.+.++|..+++.++ +...+..+||+.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 35689999999999999999999999999999988 99999999999999999999999 7777778999999
Q ss_pred HHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCCCCCCCC
Q 008632 227 GIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLED 306 (558)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (558)
++.++..++..+..++.++.......++ +.++..+..... ++.+.. +....+..+..+.....+.......
T Consensus 200 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFFLPESPRWLVGKG---RVEEARKSLARL-RGTSGE-----DKELLDELELIDIKRSIEKRSVQPS 270 (481)
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHcC---ChHHHHHHHHHH-hCCCCC-----cHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9866555544433333221110000011 111111111000 000000 0000000000000000000000000
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCccccccccc-ChhhhhhhhHHHHHHHHhhhhhh
Q 008632 307 GKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKI-PAASLQLFIGIGIITFIPIYDCI 385 (558)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 385 (558)
+..........++........ ..............+... ..... ++.. ..........+..++..++..++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l 342 (481)
T TIGR00879 271 WGSLFSSTRRIRRRLFLGVVL--QWFQQFTGINAIMYYSPT----IFENA--GVSTDHAFLVSIIVGAVNFAFTFVAIFL 342 (481)
T ss_pred HHHHHhcCchhHHHHHHHHHH--HHHHHHhCCeehHHHHHH----HHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111100000000111111000 000000000000000000 00111 1111 12333344444555556666666
Q ss_pred hhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHH-
Q 008632 386 FVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVF- 464 (558)
Q Consensus 386 ~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~- 464 (558)
.+++.||+ .+..++++..+++++........ ... . ........+. ...+...+.+.
T Consensus 343 ~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~-~~~~~~~~~~-~~~~~~~~~~~~ 399 (481)
T TIGR00879 343 VDRFGRRP-----------LLLIGAAGMAICLFVLGILGASF-----VTG-----S-SKSSGNVAIV-FILLFIAFFAMG 399 (481)
T ss_pred HHHhcchH-----------HHHHHHHHHHHHHHHHHHHhhcc-----cCC-----c-ccchhHHHHH-HHHHHHHHHHcc
Confidence 66555543 35556666666665555321000 000 0 0001222222 22233333332
Q ss_pred HhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHH
Q 008632 465 TIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGL 544 (558)
Q Consensus 465 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~ 544 (558)
..+....+..|..|++.|++++|+.++...+|.++++.+.+.+.+.. +| .+.|++.++++++++
T Consensus 400 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~------~~----------~~~f~~~~~~~~~~~ 463 (481)
T TIGR00879 400 WGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI------GV----------GGVFIFFGGLNVLGL 463 (481)
T ss_pred ccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------Cc----------cceehhHHHHHHHHH
Confidence 23555567789999999999999999999999999999999887532 12 345778888888888
Q ss_pred HHHHHhhcccccC
Q 008632 545 LAFLYFAKSYNRE 557 (558)
Q Consensus 545 ~~~~~~~~~~~~~ 557 (558)
++.+++.++.+++
T Consensus 464 i~~~~~~~~~~~~ 476 (481)
T TIGR00879 464 IFVYFFLPETKGR 476 (481)
T ss_pred HHHheecccCCCC
Confidence 8777777766544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=224.20 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=126.6
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 008632 59 NLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNN 138 (558)
Q Consensus 59 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 138 (558)
...+.+.+++|++..+.+++.+.+.+++.++.++.|+++||+ |||+++..+.++..++.++.+.....
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~----------- 117 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS----------- 117 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 334567789999999999999999999999999999999999 99999999888877777766653110
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecc
Q 008632 139 NTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD 218 (558)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 218 (558)
...+.+.+++.|+++|++.+...+....+++|++|+++ |+++++++..+.++|.++++.+..++..
T Consensus 118 --------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 118 --------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred --------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 00348889999999999999999999999999999988 9999999999999999999988776654
Q ss_pred cc---cchhhhHHHHHHHHHHH
Q 008632 219 NL---NWALGFGIPCAFMVAAL 237 (558)
Q Consensus 219 ~~---g~~~~f~~~~~~~~~~~ 237 (558)
.. +|+..|.+.++..++..
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~ 205 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIG 205 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHH
Confidence 32 58888877666544433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-23 Score=215.16 Aligned_cols=173 Identities=18% Similarity=0.231 Sum_probs=148.2
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHH
Q 008632 33 SGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASL 112 (558)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 112 (558)
+.+|+.+..+.+..+.+.+..+......+ .+++++|.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 45667777777777777776665555554 56789999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 113 IYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
+..++.+++.+.++ .+.+++.|++.|++.+...+...+++.|.+|+++ |+
T Consensus 86 ~~~~~~~~~~~~~~------------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~ 135 (405)
T TIGR00891 86 LFSAGTLACGFAPG------------------------YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RN 135 (405)
T ss_pred HHHHHHHHHHHhcc------------------------HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hh
Confidence 99999988887754 7889999999999999999999999999999888 99
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheeccccc--chhhhHHHHHHHHHHH
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNLN--WALGFGIPCAFMVAAL 237 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~ 237 (558)
++.++.+.+.++|..+++.+++.+.+..+ ||+.|.+.++..++..
T Consensus 136 ~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 136 KASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877666 9999987665544443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=209.40 Aligned_cols=366 Identities=13% Similarity=0.054 Sum_probs=223.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHH-HHHHHHHHHHHHH
Q 008632 44 GVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVV-ASLIYILGLSMMT 122 (558)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~-~~~~~~i~~~~~~ 122 (558)
+..++..++.....+.++.|+++++|.|..+.+++.+.+.+...+..++.|+++||+ ||||.++. +.++..++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence 345666677777889999999999999999999999999999999999999999999 99887654 5555566666666
Q ss_pred HHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh--hhHHHH
Q 008632 123 LLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF--FNWWYF 200 (558)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~ 200 (558)
++++ .+.+++.|++++.+.+...|...++..|..|+++ |.+. .++.+.
T Consensus 83 ~~~~------------------------~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~ 132 (375)
T TIGR00899 83 WNRN------------------------YFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRA 132 (375)
T ss_pred hcch------------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHH
Confidence 6544 7778888998888877777877788888877655 5543 577777
Q ss_pred HHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccch
Q 008632 201 GISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASE 280 (558)
Q Consensus 201 ~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (558)
+.++|..++|.+++.+.+..|||+.|++.+++.++..+..+...|+.+++++++ +...+
T Consensus 133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------------- 191 (375)
T TIGR00899 133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA--LTRLE------------------- 191 (375)
T ss_pred HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc--cCcch-------------------
Confidence 889999999999999998899999999888765555444433233221111000 00000
Q ss_pred hhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCccccccc
Q 008632 281 DEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSI 360 (558)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (558)
. +....+ ++.+.+. ...+.............+.++.. .. ...
T Consensus 192 ----------~----------------~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~----g~~--- 233 (375)
T TIGR00899 192 ----------V----------------RGLLAS--RDTRLLF--VACTLMWGCNILYIINMPLLIIH-EL----GLP--- 233 (375)
T ss_pred ----------h----------------hhhhcC--cchHHHH--HHHHHHHHHHHHHHhhhHHHHHH-Hc----CCC---
Confidence 0 000000 0111111 11111111111111112211111 00 100
Q ss_pred ccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 008632 361 KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKP 440 (558)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (558)
....+..........+...++.+++.+|..+|+ .+..+.++..+.++.....
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----------~~~~~~~~~~~~~~~~~~~----------------- 285 (375)
T TIGR00899 234 DKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR-----------LMLLAALAGVAFYTGLAAD----------------- 285 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh-----------HHHHHHHHHHHHHHHHHHH-----------------
Confidence 011122222233333344455555555444332 3444444444333332221
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcc
Q 008632 441 NVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWF 520 (558)
Q Consensus 441 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~ 520 (558)
.+.+.......+.+++.+...+....+..|..|++ ++.++|+.+...++|..+++.+.+.+.+..
T Consensus 286 -----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~--------- 350 (375)
T TIGR00899 286 -----NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERW--------- 350 (375)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 23344445556667777766666667888888875 569999999999999999999999987632
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHH
Q 008632 521 ADNLNRAHLDYFYWLLAALSAGGLLAFLY 549 (558)
Q Consensus 521 ~~~~~~~~~~~~~~~~a~~~~i~~~~~~~ 549 (558)
+++..|++.+.+.+++.+..++
T Consensus 351 -------g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 351 -------SYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred -------cchhHHHHHHHHHHHHHHHHhe
Confidence 2245677777777777666544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=213.48 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=142.6
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
+++.+..+....+.+.+..+.. .+...++++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~ 93 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 3444555555555555555444 4455567789999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++.+++.++++ .+.++++|+++|++.|...+....++.|.+|+++ |+++
T Consensus 94 ~~~~~~~~~~~~------------------------~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~ 143 (426)
T PRK12307 94 SVGTGLSGLASG------------------------VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA 143 (426)
T ss_pred HHHHHHHHHHhH------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence 999999888765 8889999999999999999999999999999888 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAF 232 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~ 232 (558)
.++++.+.++|..+++.+.+.+.+..+||+.|++....
T Consensus 144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 99999999999999999999888888999999875543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=212.59 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=143.4
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
+|+.+..+.+..+++......+ ......+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 3444444444444444333333 4445578999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++.+++.++.+ .+.+++.|+++|++.+...+....++.|.+|+++ |+++
T Consensus 84 ~~~~~~~~~~~~------------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~ 133 (412)
T TIGR02332 84 GIASTATMFATG------------------------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARA 133 (412)
T ss_pred HHHHHHHHHhcC------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHH
Confidence 999999988755 7889999999999999999988899999999877 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheecc------cccchhhhHHHHHHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQD------NLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
+++++.+.++|..+++.+++++.+ ..|||+.|++.++..++..++.
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887753 4689999998776655443333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=209.58 Aligned_cols=171 Identities=13% Similarity=0.170 Sum_probs=144.8
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+.++......+......+...+.+|. +++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 34455555555555555556666655 5678999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+.+++.++++ .+.+++.|+++|++.+...+.....+.|.+|+++ |++.++
T Consensus 81 ~~~l~~~~~~------------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 130 (382)
T PRK10091 81 GNAMFTLSSS------------------------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVA 130 (382)
T ss_pred HHHHHHHhCc------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHH
Confidence 9999888755 8889999999999999888888888899998877 999999
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
++..+..+|..++|.+++.+.+..+||+.|++.++..++..+.
T Consensus 131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988889999999887765544443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-23 Score=210.24 Aligned_cols=349 Identities=19% Similarity=0.265 Sum_probs=221.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHH
Q 008632 44 GVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTL 123 (558)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~ 123 (558)
+..++..+....+.+.++.++.+++|.+..+.+++.+.+.+...++.++.|+++||+ |||+++..+.++.+++..++.+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhh
Confidence 344455555555666666688899999999999999999999999999999999998 9999999999999999666655
Q ss_pred HHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHH
Q 008632 124 LALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGIS 203 (558)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 203 (558)
+++ .+.++++|++.|++.+...+...+++.|.+|+++ |++++++.+...+
T Consensus 82 ~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~ 131 (352)
T PF07690_consen 82 ASN------------------------FWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFS 131 (352)
T ss_dssp HCC------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHH
T ss_pred hhh------------------------HHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhh
Confidence 433 5689999999999999999999999999999988 9999999999999
Q ss_pred HHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhh
Q 008632 204 FGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEA 283 (558)
Q Consensus 204 ~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (558)
+|..++|.+++.+.+..+|++.|++.+++.++..+......++.+++++++ ++.++. ++
T Consensus 132 ~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~--~~~~~~--------~~----------- 190 (352)
T PF07690_consen 132 LGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERE--SPKESE--------SK----------- 190 (352)
T ss_dssp HHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT----SSTTTT---------------------
T ss_pred hhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccc--cccccc--------cc-----------
Confidence 999999999999998899999999888877766554322222111111111 000000 00
Q ss_pred hcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhcccceeeeeccccCccccccccc
Q 008632 284 QSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALL-RLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKI 362 (558)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (558)
+ ..++.+.. +...+++... .....+.....+.......+.++ .+..+.+ + ..
T Consensus 191 ---~----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~---~---~~ 243 (352)
T PF07690_consen 191 ---K----------------PKPLKPGF-KSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYL-QEVLGFS---G---PS 243 (352)
T ss_dssp ---H----------------HHCCCH-C-THHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHCC---T---HH
T ss_pred ---c----------------cccccccc-ccccccchhhhhhhhhhHHHHHHHHhhcccchhh-hhccCCC---H---HH
Confidence 0 00000000 0111222111 11111121112222222222211 1111111 0 01
Q ss_pred ChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCC
Q 008632 363 PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 442 (558)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (558)
..+.......+...+..++.+++.+|+.+|. ..........+..+.......
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~----------------- 295 (352)
T PF07690_consen 244 QAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR-----------RLLIAILLLILGALGLLLLPF----------------- 295 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHHCCSHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----------HHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 1222334444555555666666655544432 122222222222222222110
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHH
Q 008632 443 TIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSS 501 (558)
Q Consensus 443 ~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~ 501 (558)
..+..+.....++.+++.+...+...++..+..|++.||++.|+.++..++|..++|
T Consensus 296 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 296 --SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp --HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 123345555667788888888888889999999999999999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-22 Score=208.76 Aligned_cols=174 Identities=9% Similarity=0.097 Sum_probs=142.5
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
+++|..+.+.+..++........-..++ .+++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 4556666666665555554444434444 46779999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
..++.+++.++++ .+.+++.|+++|++.|...+...+++.|.+|+++ |++
T Consensus 82 ~~i~~~l~~~~~~------------------------~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~ 131 (394)
T PRK03699 82 MILAVAGLMFSHS------------------------LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGS 131 (394)
T ss_pred HHHHHHHHHHcch------------------------HHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHH
Confidence 9999988887654 7788999999999999988899999999998877 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheec-ccccchhhhHHHHHHHHHHHHH
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQ-DNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~-~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
..+..+...++|+.++|.+.+.+. +..|||+.|.+.++..++..+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 999988888899999998888765 4579999998777655444333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=211.00 Aligned_cols=353 Identities=11% Similarity=0.064 Sum_probs=221.4
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 008632 58 SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQN 137 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (558)
+.+.+++++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.++++
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~~----------- 90 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIADS----------- 90 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHHH-----------
Confidence 4456678889999999999999999999999999999999998 9999999999999999999888866
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheec
Q 008632 138 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ 217 (558)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 217 (558)
.+.++++|++.|++.+...+.....+.|.+| ++ |+++.+++..+.++|..+++.+.+.+.
T Consensus 91 -------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (377)
T TIGR00890 91 -------------LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVI 150 (377)
T ss_pred -------------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHH
Confidence 8889999999999999887777778888887 45 899999999999999887666666666
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhh
Q 008632 218 DNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALL 297 (558)
Q Consensus 218 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (558)
+..|||+.|++.++..++..+..+...++.++++.+++ +...+ ++.+..
T Consensus 151 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------------------~~~~~~----- 199 (377)
T TIGR00890 151 NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTN-IEVSV-------------------------KDYTVW----- 199 (377)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccC-cccch-------------------------hhhhHH-----
Confidence 67799999998777655544333322211111000000 00000 000000
Q ss_pred cCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHH
Q 008632 298 ATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIIT 377 (558)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (558)
+..++++........+......... ......+.+ +.... ............+..++
T Consensus 200 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~ 255 (377)
T TIGR00890 200 ---------------EMLRTPQFWVLYLSFFLNAVSGLLL-IGLYKPYGQ-----SLGLS---DGFLVLAVSISSIFNGG 255 (377)
T ss_pred ---------------HHHcCccHHHHHHHHHHHhHHHHHH-HHHHHHHHH-----HcCCC---HHHHHHHHHHHHHHHHH
Confidence 0000111111111111111111111 111111111 00110 01122344445555666
Q ss_pred HHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHH
Q 008632 378 FIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLL 457 (558)
Q Consensus 378 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (558)
..++.+++.||+.||+ .+..+.++..++++...... ...........++
T Consensus 256 ~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 304 (377)
T TIGR00890 256 GRPFLGALSDKIGRQK-----------TMSIVFGISAVGMAAMLFIP--------------------MLNDVLFLATVAL 304 (377)
T ss_pred HHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHHHHHHHcc--------------------cchhHHHHHHHHH
Confidence 6677777766665543 35556666666655544321 1122222233344
Q ss_pred HHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHH
Q 008632 458 CGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLA 537 (558)
Q Consensus 458 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a 537 (558)
.+++.+...+....++.|..|++.|+.+.|+.+....+|..+++.+.+.+.+.. + +...|.+.+
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g----------~~~~f~~~~ 368 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI------G----------FEYTFIVTG 368 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh------c----------hhhHHHHHH
Confidence 555555444455567889999999999999999999999999999999987532 2 244566666
Q ss_pred HHHHHHH
Q 008632 538 ALSAGGL 544 (558)
Q Consensus 538 ~~~~i~~ 544 (558)
+++++++
T Consensus 369 ~~~~~~~ 375 (377)
T TIGR00890 369 AFALTSL 375 (377)
T ss_pred HHHHHhc
Confidence 6666543
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-22 Score=209.72 Aligned_cols=177 Identities=13% Similarity=0.140 Sum_probs=129.8
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhcccc--CCChHHHHHHH-----HHHHHHHHHHHHHHHHHhHhhcchhHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQL--GESTATAAAAV-----NVWSGTASLLPLLGAFLADSFLGRFRTI 107 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Grr~~~ 107 (558)
++|.+....+..+++.+....+....+.++.+++ +.++.+ +++. +...++..++.++.|+++||+ |||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l 97 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence 3455566666667776666544444455666555 677663 4443 233445667888899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhh
Q 008632 108 VVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQE 187 (558)
Q Consensus 108 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~ 187 (558)
..+.++++++.++++++++...... .....+++.|+++|++.|+..+....++.|.+|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~--- 158 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIGW----------------WAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK--- 158 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHH----------------HHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC---
Confidence 9999999999999998755211000 012258889999999999999999999999999988
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhhhhheec--------ccccchhhhHHHHHHHHH
Q 008632 188 RRAKSSFFNWWYFGISFGANSTILVVIYIQ--------DNLNWALGFGIPCAFMVA 235 (558)
Q Consensus 188 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~~ 235 (558)
|++..+..+.+..+|..++..+...+. ..+|||.+|++.++..++
T Consensus 159 ---rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 159 ---KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 999999988888888888876665543 257999999987765443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-22 Score=213.88 Aligned_cols=385 Identities=12% Similarity=0.080 Sum_probs=229.3
Q ss_pred HHhccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 008632 62 TYLTGQLGES---TATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNN 138 (558)
Q Consensus 62 ~yl~~~~~~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 138 (558)
..+.+++|++ ..+.++..+.+.++..++.++.|+++||+ |||++++.+.++..++.+++.++.+
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~~------------ 179 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSPN------------ 179 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHccc------------
Confidence 3467899999 89999999999999999999999999998 9999999999999999988888754
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecc
Q 008632 139 NTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD 218 (558)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 218 (558)
.+.+++.|++.|++.++..+...+++.|.+|+++ |+++.++...+..+|.+++++++..+.+
T Consensus 180 ------------~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (505)
T TIGR00898 180 ------------YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD 241 (505)
T ss_pred ------------HHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8889999999999999999999999999999988 9999999998999999999988776653
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhc
Q 008632 219 NLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLA 298 (558)
Q Consensus 219 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (558)
||+.|++.++..++..+..+.. ++.++....+ ...++..+.+....+....... ++....+..+..
T Consensus 242 ---wr~~~~~~~i~~~~~~~~~~~~-~esp~~l~~~--~~~~~a~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~ 307 (505)
T TIGR00898 242 ---WRWLQLAVSLPTFLFFLLSWFV-PESPRWLISQ--GRIEEALKILQRIAKINGKKLP--------AEVLSLSLEKDL 307 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHC--CCHHHHHHHHHHHHHHcCCCCC--------HHHHhhhhhhhh
Confidence 9999988776655554444332 2111100001 1112222222222111111000 000000000000
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHH
Q 008632 299 TPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITF 378 (558)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (558)
........++.... +++.....+..+.........+.... .... ..+ ...........+..+..
T Consensus 308 ~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~----~~~~~~~~~~~~~~i~~ 371 (505)
T TIGR00898 308 SSSKKQYSFLDLFR----TPNLRKTTLCLMMLWFTTAFSYYGLV-LDLG-------NLG----GNIYLDLFISGLVELPA 371 (505)
T ss_pred hhccCCCcHHHHhC----ChHHHHHHHHHHHHHHHHHHHHHHHh-cccc-------ccC----CChHHHHHHHHHHHHHH
Confidence 00000001111111 11111111111111111111111111 0000 111 11112222333444444
Q ss_pred HhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHH
Q 008632 379 IPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLC 458 (558)
Q Consensus 379 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 458 (558)
..+...+.++++||. .+..++++.+++++...... ....++.....++.
T Consensus 372 ~~~~~~l~dr~grr~-----------~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~ 420 (505)
T TIGR00898 372 KLITLLLIDRLGRRY-----------TMAASLLLAGVALLLLLFVP--------------------VDLYFLRTALAVLG 420 (505)
T ss_pred HHHHHHHHHHhCCHH-----------HHHHHHHHHHHHHHHHHHcC--------------------CCchHHHHHHHHHH
Confidence 445555555555543 46666777777666555431 11223334444455
Q ss_pred HHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHH
Q 008632 459 GIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAA 538 (558)
Q Consensus 459 g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~ 538 (558)
+++.....+..+.+..|..|++.|+.++|+.++...+|++++|.+.+ +.+. +....++++++
T Consensus 421 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-----------------~~~~~~~~~~~ 482 (505)
T TIGR00898 421 KFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-----------------WLFLPLVLFGG 482 (505)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-----------------HHhhHHHHHHH
Confidence 55555566666788999999999999999999999999999999888 4321 11235666777
Q ss_pred HHHHHHHHHHHhhcccccC
Q 008632 539 LSAGGLLAFLYFAKSYNRE 557 (558)
Q Consensus 539 ~~~i~~~~~~~~~~~~~~~ 557 (558)
+.+++.++.+ +.++++++
T Consensus 483 ~~~~~~~~~~-~lpet~~~ 500 (505)
T TIGR00898 483 LALLAGILTL-FLPETKGV 500 (505)
T ss_pred HHHHHHHHHH-cCcCCCCC
Confidence 7777666554 45666654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=214.33 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=122.0
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 008632 59 NLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNN 138 (558)
Q Consensus 59 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 138 (558)
...+|+.++ |++..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++.+++.+++.+...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~------------ 115 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW------------ 115 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc------------
Confidence 344567777 99999999999999999999999999999999 9999999999999988888777531
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHH-Hhhhhhhheec
Q 008632 139 NTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA-NSTILVVIYIQ 217 (558)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~ 217 (558)
...+.+.+++.|++.|++.|...+.....+.|++|+++ |++++++++.+.++|+ ..+|+++..+.
T Consensus 116 --------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 116 --------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred --------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 00236778889999999999988888888899999887 9999999999999886 45665543333
Q ss_pred ccccchhhhHHHHHHHHHH
Q 008632 218 DNLNWALGFGIPCAFMVAA 236 (558)
Q Consensus 218 ~~~g~~~~f~~~~~~~~~~ 236 (558)
...|||+.|++.+++.++.
T Consensus 182 ~~~gw~~~f~i~~~~~~~~ 200 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILV 200 (452)
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 3448999998877655443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=207.15 Aligned_cols=340 Identities=13% Similarity=0.047 Sum_probs=214.4
Q ss_pred hhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008632 53 YYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSS 132 (558)
Q Consensus 53 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 132 (558)
...+.+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||+++.+.++..++.+++..+++
T Consensus 29 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~------ 100 (406)
T PRK15402 29 NDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQS------ 100 (406)
T ss_pred hhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHcc------
Confidence 3344455554 5578999999999999999999999999999999999 9999999999998888888877644
Q ss_pred ccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhh
Q 008632 133 SDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILV 212 (558)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 212 (558)
.+.+++.|+++|++.+...+...+.+.|.+|+++ |.+..++......+|..++|.+
T Consensus 101 ------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i 156 (406)
T PRK15402 101 ------------------IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLV 156 (406)
T ss_pred ------------------HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999888888899999999877 8888898888888999999999
Q ss_pred hheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhH
Q 008632 213 VIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFL 292 (558)
Q Consensus 213 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (558)
++.+.++.+|++.|++.+++.+++.+..+...|+.+++++++ .+.++..+.....
T Consensus 157 ~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----------------------- 211 (406)
T PRK15402 157 GAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK--LSLKELGRDYKLV----------------------- 211 (406)
T ss_pred HHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc--ccHHHHHHHHHHH-----------------------
Confidence 999988889999998877666555444333222211110000 0111100000000
Q ss_pred HhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccc-cChhhhhhhh
Q 008632 293 NKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK-IPAASLQLFI 371 (558)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 371 (558)
.++++.+....................+.++.. ..+ .+ ...+......
T Consensus 212 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~g--~~~~~~g~~~~~~ 260 (406)
T PRK15402 212 ----------------------LKNRRFVAGALALGLVSLPLLAWIALSPVILIS-------GEQ--LSSYEYGLLQVPV 260 (406)
T ss_pred ----------------------HcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HhC--CCHHHHHHHHHHH
Confidence 001111111111111111111111111111111 111 11 0111222222
Q ss_pred HHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHH
Q 008632 372 GIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWL 451 (558)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (558)
....++..++.+++.++..+ .+.+..+.++..++++........ ...+++++
T Consensus 261 ~~~~~~g~~~~g~l~~r~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~-----------------~~~~~~~~ 312 (406)
T PRK15402 261 FGALIAGNLTLARLTSRRPL-----------RSLIRMGLWPMVAGLLLAALATVI-----------------SSHAYLWL 312 (406)
T ss_pred HHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHHHHc-----------------ccccHHHH
Confidence 23344444555555443332 335667777776776665543210 11345556
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 452 IPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 509 (558)
Q Consensus 452 ~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~ 509 (558)
++..++.+++.+...+........ .+++.||++.++.++.+.++..+|+.+.+.+.+
T Consensus 313 ~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 313 TAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 677778888888776555444433 455899999999999999999999999998865
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=214.54 Aligned_cols=380 Identities=13% Similarity=0.077 Sum_probs=226.8
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCC
Q 008632 67 QLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSP 146 (558)
Q Consensus 67 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (558)
+++++..+.+++.+.+.+++.++.+++|+++||+ |||+++..+.++..++.+++.++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 7899999999999999999999999999999999 9999999999988888877765532
Q ss_pred CchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccc-ccchhh
Q 008632 147 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWALG 225 (558)
Q Consensus 147 ~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~ 225 (558)
...+.+++.|+++|++.+...+....+++|++|+++ |+++.++.+.+.++|..+++++++.+.+. .|||..
T Consensus 129 --~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 129 --GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred --cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 236678999999999999999999999999999888 99999999999999999999999999888 499999
Q ss_pred hHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCCCCCCC
Q 008632 226 FGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLE 305 (558)
Q Consensus 226 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (558)
|++.++..++..+.++...++.+++++++ +. .+ + ++++.....+. ...
T Consensus 201 f~i~~~~~~~~~~~~~~~~~~~p~~~~~~--~~-~~--~-------------------------~~i~~~~~~~~--~~~ 248 (465)
T TIGR00894 201 FYVFGIVGCAWSLLWFVFPADDPSIHPCI--SK-FE--K-------------------------KYINSSLQGQK--GST 248 (465)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcccCCCC--CH-HH--H-------------------------HHHHhhccccc--CCC
Confidence 99887766555444433332222111111 10 00 0 00000000000 000
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhh
Q 008632 306 DGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCI 385 (558)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (558)
+++....+..+++..+...+..+.....++....+++.++.+ ..+.+ ....+.......+..++..++.+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~-~~g~s-------~~~~g~~~~~~~~~~~i~~~~~g~l 320 (465)
T TIGR00894 249 RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISW-VLRVS-------GKENGLLSSLPYLFAWLCSIFAGYL 320 (465)
T ss_pred CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcC-------hHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111222222222233333333333333433321 11111 1122344455566666777778888
Q ss_pred hhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHH
Q 008632 386 FVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFT 465 (558)
Q Consensus 386 ~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~ 465 (558)
.|+..+|...++ ...+.+..+..+...+...+.... ...+.+..++.+.+.+.+.+..
T Consensus 321 ~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~~~~ 378 (465)
T TIGR00894 321 ADFLKSSKTLSL---TAARKIFNGIGGLGPGIFAYALPY-------------------LSAAFYLTIIILTLANAVSSGP 378 (465)
T ss_pred HHHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHHHHH-------------------cCCchHHHHHHHHHHHHHhhhh
Confidence 777665532110 011111112111111111111110 0112223333333333333333
Q ss_pred hhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHH
Q 008632 466 IVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLL 545 (558)
Q Consensus 466 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~ 545 (558)
.+.......+..|+ .+|.++|+.++...++..++|.+.+.+.+.. + .+.+...|.+.+++.+++.+
T Consensus 379 ~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~------~-------~~~~~~~f~~~~~~~~i~~i 444 (465)
T TIGR00894 379 LAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQD------S-------KNVWLIVFLIMAFVNILCVI 444 (465)
T ss_pred hhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCC------C-------chHHHHHHHHHHHHHHHHHH
Confidence 33343445566665 8999999999999999999999888775421 1 13345678888888888877
Q ss_pred HHHHhh
Q 008632 546 AFLYFA 551 (558)
Q Consensus 546 ~~~~~~ 551 (558)
++.++.
T Consensus 445 ~~~~~~ 450 (465)
T TIGR00894 445 FYLIFG 450 (465)
T ss_pred Heeeee
Confidence 776644
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=217.42 Aligned_cols=384 Identities=14% Similarity=0.139 Sum_probs=238.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHH
Q 008632 42 IIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMM 121 (558)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~ 121 (558)
+....+...+..... ....+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.++.+.++..++.+++
T Consensus 7 ~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 7 LMLGTFMAVLDSTIV-NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHHH
Confidence 334444444444333 3444456778999999999999999999999999999999999 99999999999999999998
Q ss_pred HHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHH
Q 008632 122 TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFG 201 (558)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 201 (558)
.++++ .+.++++|+++|++.+...+...+++.|.+|+++ |+++.++++..
T Consensus 85 ~~~~~------------------------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~ 134 (485)
T TIGR00711 85 GVAPN------------------------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLT 134 (485)
T ss_pred hCcCC------------------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHH
Confidence 87754 7889999999999999999999999999999877 99999999999
Q ss_pred HHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHH--------HHHhhc
Q 008632 202 ISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFV--------VAIKTR 273 (558)
Q Consensus 202 ~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 273 (558)
..+|..++|.+++++.++.+||+.|++.+...+++.+......++.+++ ++ ++.+.....+. ....+.
T Consensus 135 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~d~~g~~l~~~~~~~~~~~~~~~ 210 (485)
T TIGR00711 135 VLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--AS--ENFDFLGLLLLSVGLGSLLYGLSEG 210 (485)
T ss_pred HHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--cc--CCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999987766555544443333321111 11 11121111110 000000
Q ss_pred cccccchhhhhcccchhhH---H-------hhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 274 KATLASEDEAQSSQQFKFL---N-------KALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTT 343 (558)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (558)
+.. .+.++...... . ...+... ..+.. ..+..++++.....+..+.....+.......+.
T Consensus 211 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 280 (485)
T TIGR00711 211 PER-----GWFDSNEILILSITGLVAIIAFVVWELTD---DNPLV--DLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPL 280 (485)
T ss_pred CCC-----CCCCchHHHHHHHHHHHHHHHHHHHHHcC---CCCcc--CHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000000000 0 0000000 00000 001111111111112222222222222222221
Q ss_pred eeeeeccccCccccccc-ccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 008632 344 FFTKQGATMDRTITRSI-KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAAL 422 (558)
Q Consensus 344 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 422 (558)
++.. .. +. ....+.......+..++..++.+++.++..+| +.+..|..+.++++.++..
T Consensus 281 ~~~~-------~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~g~~~~~~~~~~~~~ 340 (485)
T TIGR00711 281 YLQQ-------VL--GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTIGLILYAVGFYWRAF 340 (485)
T ss_pred HHHH-------hc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHHHHHHHHHHHHHHhc
Confidence 1111 11 11 11223444445566666677777765554443 3466677777776665542
Q ss_pred HHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 008632 423 VEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSI 502 (558)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~ 502 (558)
.. ....+.+......++.+++.+...+.......+..|++.|+.+.|+.++.+.+|+.+|+.
T Consensus 341 ~~------------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~ 402 (485)
T TIGR00711 341 TF------------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTA 402 (485)
T ss_pred cC------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 10 012344455556778888888876666667788899999999999999999999999999
Q ss_pred HHHHHhh
Q 008632 503 LVSIINE 509 (558)
Q Consensus 503 ~~~~i~~ 509 (558)
+.+.+.+
T Consensus 403 i~g~~~~ 409 (485)
T TIGR00711 403 LITTILT 409 (485)
T ss_pred HHHHHHH
Confidence 9998876
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-22 Score=206.22 Aligned_cols=169 Identities=14% Similarity=0.193 Sum_probs=140.1
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
++.+..+....+...+..... ....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 16 WRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFS 93 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHH
Confidence 444444444444444444333 4444566778999999999999999999999999999999999 99999999999888
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++.+++.+..+ .+.+++.|++.|++.+...+...+++.|.+|+++ |++++
T Consensus 94 ~~~~~~~~~~~------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 143 (398)
T TIGR00895 94 VFTLLCALATN------------------------VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAV 143 (398)
T ss_pred HHHHHHHHccc------------------------hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhH
Confidence 88888777644 7788899999999999999999999999999877 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHH
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAA 236 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~ 236 (558)
++.+.+.++|..+++.+++.+.+..||+..|++.++..++.
T Consensus 144 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 184 (398)
T TIGR00895 144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLL 184 (398)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHH
Confidence 99999999999999999999998899999998875444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=201.27 Aligned_cols=347 Identities=20% Similarity=0.285 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHH
Q 008632 42 IIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMM 121 (558)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~ 121 (558)
+....+......+......+.|.+ ++|.+..+.+++.+...+...++.++.|+++||+ |||+.+..+.++..++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHH
Confidence 445556666777777777777765 6799999999999999999999999999999999 99999999999999999988
Q ss_pred HHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHH
Q 008632 122 TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFG 201 (558)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 201 (558)
.+.++ .+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+..
T Consensus 82 ~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 131 (352)
T cd06174 82 AFASS------------------------LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAG 131 (352)
T ss_pred HHhcc------------------------HHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHH
Confidence 88744 7889999999999999999999999999999988 99999999999
Q ss_pred HHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchh
Q 008632 202 ISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASED 281 (558)
Q Consensus 202 ~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (558)
.++|..++|.+++.+.+..+|+..|++.++..++..+...... + ..
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------~~------------------- 177 (352)
T cd06174 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL---------R------LL------------------- 177 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---------H------HH-------------------
Confidence 9999999999999999988999999888776665544433221 0 00
Q ss_pred hhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccc
Q 008632 282 EAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK 361 (558)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (558)
+......+.............+....+ ..+.+ .
T Consensus 178 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~ 210 (352)
T cd06174 178 ---------------------------------------LLLALAFFLLSFGYYGLLTYLPLYLQE-VLGLS-------A 210 (352)
T ss_pred ---------------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHH-hcCCC-------H
Confidence 000011111111111111111111111 00000 1
Q ss_pred cChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 008632 362 IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPN 441 (558)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (558)
...+.......+...+..++..++.+|..+|+ ..+..+.++..++++.....
T Consensus 211 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~------------------ 262 (352)
T cd06174 211 AEAGLLLSLFGLGGILGALLGGLLSDRLGRRR----------LLLLIGLLLAALGLLLLALA------------------ 262 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHh------------------
Confidence 12334455556666677777777655554442 04667777777777766653
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccc
Q 008632 442 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFA 521 (558)
Q Consensus 442 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~ 521 (558)
.+.+...+..++.+++.+...+...++..|..|++.|++.+|+.+....++..+++.+.+.+.+.
T Consensus 263 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~----------- 327 (352)
T cd06174 263 ----PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT----------- 327 (352)
T ss_pred ----ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------
Confidence 23566777788889999988888889999999999999999999999999999999999999752
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHH
Q 008632 522 DNLNRAHLDYFYWLLAALSAGGLLAFLY 549 (558)
Q Consensus 522 ~~~~~~~~~~~~~~~a~~~~i~~~~~~~ 549 (558)
.+.+..+.+.+.+.+++.+..++
T Consensus 328 -----~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 328 -----GGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred -----cCcchHHHHHHHHHHHHHHHhee
Confidence 12234577777777776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=202.15 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=137.5
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.|.++.+....++...+...+.+.+|.|++ ++|.|..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 456777778888888877777788888776 6899999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++...+.++++ .+.++++|+++|++.+...+...+.+.|..++++ |++++
T Consensus 83 ~~~~~~~~~~~------------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 132 (381)
T PRK03633 83 AGCAGLGLMVG------------------------FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLL 132 (381)
T ss_pred HHHHHHHHhcc------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence 99988887755 8889999999999999988888777888888776 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccchhh
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNWALG 225 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 225 (558)
++++...++|..+||.+++.+.+...|...
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 162 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTELMSVLP 162 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 999999999999999999998775433333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=216.03 Aligned_cols=352 Identities=13% Similarity=0.050 Sum_probs=211.0
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 008632 61 ITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNT 140 (558)
Q Consensus 61 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 140 (558)
...+.+++|.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.+++.++.+
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------- 106 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSSN-------------- 106 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhhh--------------
Confidence 3456679999999999999999999999999999999998 9999999999999999888877754
Q ss_pred CCCCCCCchhHHHHHH-HHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccc
Q 008632 141 AKSCSPHHFQIIVFIF-SLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN 219 (558)
Q Consensus 141 ~~~~~~~~~~~~~~~~-~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 219 (558)
.+.+++ .|++.|++.+...+...+.+.+.++ ++ |+++.++.+.+.++|..++|.+.+.+.+.
T Consensus 107 ----------~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~ 169 (455)
T TIGR00892 107 ----------VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFES 169 (455)
T ss_pred ----------HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 555554 4688999998776666777888885 55 99999999999999999999999999988
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcC
Q 008632 220 LNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLAT 299 (558)
Q Consensus 220 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (558)
.|||+.|++.+++.+++.+..+..++....+...+ ....+ +..... ..++.+... ..+
T Consensus 170 ~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~---------~~~~~~------~~~~~~~~~--~~~--- 227 (455)
T TIGR00892 170 FGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSK--SKSKE---------GLPPDG------STKKLSKKS--TAE--- 227 (455)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHhCCCCccccccc--ccccc---------cCCCCC------ccccccccc--hhh---
Confidence 99999999888776555444333332211100000 00000 000000 000000000 000
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHH-HHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHH
Q 008632 300 PDVSLEDGKLCTLEDVEEAKALLRL-IPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITF 378 (558)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (558)
...++..+ + ....+..... ...++....+.......+.+. . +.... ....+.......+..++.
T Consensus 228 ---~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~-----~~g~s---~~~~g~~~~~~~~~~~~~ 292 (455)
T TIGR00892 228 ---KINRFLDF--S-LFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYA-K-----DKGVD---EYEAAFLLSIIGFVDIFA 292 (455)
T ss_pred ---hhhhhcch--H-HhcCchHHHHHHHHHHHHHHccchHHHHHHHH-H-----HcCCC---HHHHHHHHHHHHHHHHHH
Confidence 00000000 0 1111122111 111111111111111111111 1 11110 112233344445555566
Q ss_pred HhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHH
Q 008632 379 IPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLC 458 (558)
Q Consensus 379 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 458 (558)
.++..++.++...| ......+..++++.++++++.... .+.+.+++..++.
T Consensus 293 ~~~~g~l~d~~~~~-------~~~~~~~~~~~~~~~l~~ll~~~~----------------------~~~~~~~i~~~~~ 343 (455)
T TIGR00892 293 RPSCGLIAGLKWIR-------PHVQYLFSFALLFNGLTHLLCALA----------------------GDYTGLVIYCIFF 343 (455)
T ss_pred HHHHHHHhcccccC-------HHHHHHHHHHHHHHHHHHHHHHHh----------------------chHHHHHHHHHHH
Confidence 66666664431111 011222333444444443333322 3445556666777
Q ss_pred HHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 459 GIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 510 (558)
Q Consensus 459 g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~ 510 (558)
|++.+...+...+++.+.+|++.++.++|+.++...+|..+||.+.|.+.|.
T Consensus 344 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~ 395 (455)
T TIGR00892 344 GLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA 395 (455)
T ss_pred HHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence 8888777777778889999999999999999999999999999999988753
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=210.53 Aligned_cols=176 Identities=17% Similarity=0.174 Sum_probs=129.4
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCCh--HH--HHH--HHHHHHHHHHHHHHHHHHHhHhhcchhHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGEST--AT--AAA--AVNVWSGTASLLPLLGAFLADSFLGRFRTIVV 109 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~--~~~--~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~ 109 (558)
++.+....+..+++.+.+.. ..+...++.++++.+. .. .+. +.+...++..++.++.|+++||+ |||+++..
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 34455555666777665544 3445567777775332 21 111 24667788889999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhh
Q 008632 110 ASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERR 189 (558)
Q Consensus 110 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (558)
++++++++.++++++++..++.. .....+++.|+++|+|.|+..+...++++|.+|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g~----------------~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~----- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIGI----------------WAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK----- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHHH----------------HHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-----
Confidence 99999999999999865221000 011248899999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhheec--------ccccchhhhHHHHHHHHH
Q 008632 190 AKSSFFNWWYFGISFGANSTILVVIYIQ--------DNLNWALGFGIPCAFMVA 235 (558)
Q Consensus 190 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~~ 235 (558)
|++..++...+..+|..+++.+...+. ..+|||++|++.++..++
T Consensus 152 -Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 152 -RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 999999988888888777775543322 257999999987654443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=202.17 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=145.5
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
++.++.+....+....+.....+.+| .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 34444444444555555544545554 45678999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++.+++.+.++ .+.+++.|++.|++.+...+...+++.|.+|+++ |++..
T Consensus 82 ~~~~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 131 (385)
T TIGR00710 82 LSSLGLALSNN------------------------IETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIY 131 (385)
T ss_pred HHHHHHHHHcc------------------------HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHH
Confidence 99988887754 7789999999999999999999999999999887 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
++.+...++|..++|.+++.+.+..+|+..|++.++..++..+..+.
T Consensus 132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988889999998777665554444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=207.28 Aligned_cols=396 Identities=12% Similarity=0.026 Sum_probs=229.6
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
++.+|.+....++..+++..+.+.++.|+++++|+|..+.+++.+.+.+...+++++.|+++||+ |||++++.+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~ 87 (420)
T PRK09528 9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL 87 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence 45677776777777777878899999999999999999999999999999999999999999999 99999988766655
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++..........+. . ......+.++.++..+.........+.++.+... ++++..+
T Consensus 88 ~~~~~~~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~ 143 (420)
T PRK09528 88 VLFGPFFIYVFAPL-------------------L-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEY 143 (420)
T ss_pred HHHHHHHHHHHHHH-------------------H-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccc
Confidence 44432221100000 0 0011122222233333322222223333332111 1267788
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccc
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKA 275 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (558)
+..+...++|..++|.+++.+.+ .+|+.+|++.++..+++.+..+..+++.++++..++ ++.
T Consensus 144 g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------- 205 (420)
T PRK09528 144 GRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN-ALG---------------- 205 (420)
T ss_pred hhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc-chh----------------
Confidence 88888889999999999998876 489999988776665555554433322111110000 000
Q ss_pred cccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHhhcccceeeeeccccCc
Q 008632 276 TLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLR-LIPIWATCLVYAIVFAQYTTFFTKQGATMDR 354 (558)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (558)
.+++....+.... ..+++.+.. .+........+.....+.+.++.... .+.
T Consensus 206 ---------~~~~~~~~~~~~~-----------------~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 257 (420)
T PRK09528 206 ---------ANASAVSLKDALA-----------------LLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATP 257 (420)
T ss_pred ---------cccccccHHHHHH-----------------HccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hcc
Confidence 0000000000000 000111111 11111111111222222222222110 011
Q ss_pred ccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008632 355 TITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEY 434 (558)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 434 (558)
..+ ....+.......+...+..++.+++.+|+++|+ .+..+.++.+++++..++.
T Consensus 258 ~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~l~~~~~~l~~~~----------- 312 (420)
T PRK09528 258 EQG---TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-----------ALLLAGTIMAVRIIGSGFA----------- 312 (420)
T ss_pred Ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-----------hhHHHHHHHHHHHHHHHhc-----------
Confidence 110 011234444455555566777777766655543 3566666666666665543
Q ss_pred ccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccC
Q 008632 435 GLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI-YMSVLGVGGFLSSILVSIINEATSR 513 (558)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~ig~~~~~~i~~~~~~ 513 (558)
.+.+.++....+.+++.....+...+++.+..|++.++...+. +++...+|..+++.+.|.+.|..
T Consensus 313 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-- 379 (420)
T PRK09528 313 -----------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-- 379 (420)
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 2345555666777777777666666888999999999988766 67788999999999999998642
Q ss_pred CCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008632 514 DGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 554 (558)
Q Consensus 514 ~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~ 554 (558)
+++..|.+.+++.++..++.++..|+.
T Consensus 380 --------------G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 380 --------------GFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 224567777888777777666665543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=210.88 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=119.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCc
Q 008632 69 GESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHH 148 (558)
Q Consensus 69 ~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (558)
+.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.++.+. ...
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~------------------~~~ 112 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGS------------------SPK 112 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCc------------------ccc
Confidence 45677788999999999999999999999999 99999999999999999888775320 000
Q ss_pred hhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecc----------
Q 008632 149 FQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD---------- 218 (558)
Q Consensus 149 ~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------- 218 (558)
.+.+.++++|+++|++.|+..+..+.+++|.+|++. |+++.++.+....+|..+++.++..+..
T Consensus 113 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~ 186 (502)
T TIGR00887 113 SVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAA 186 (502)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 125789999999999999999999999999999998 9999999999999999888877654321
Q ss_pred -------------cccchhhhHHHHHHHHHHHH
Q 008632 219 -------------NLNWALGFGIPCAFMVAALV 238 (558)
Q Consensus 219 -------------~~g~~~~f~~~~~~~~~~~~ 238 (558)
..+||++|.+.++..++..+
T Consensus 187 ~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 187 DEASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred ccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 23799999877765554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-22 Score=212.39 Aligned_cols=172 Identities=13% Similarity=0.086 Sum_probs=129.9
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+.+.......+...+..+.+.+.+ .++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHH
Confidence 333333344444444445544444 466789999999999999999999999999999999999 999999999988888
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+.+++.++.+ .+.+++.|+++|++.+... ....+++|++|+++ |+++.+
T Consensus 114 ~~~~~~~~~s------------------------~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g 162 (476)
T PLN00028 114 AVFCMSLVSS------------------------ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANG 162 (476)
T ss_pred HHHHHHHhcC------------------------HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHH
Confidence 8888877644 7778889999999887653 34567899999888 999999
Q ss_pred HHHHHHHHHHHhhhhhhheec----c-----cccchhhhHHHHHHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQ----D-----NLNWALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~----~-----~~g~~~~f~~~~~~~~~~~~~~~ 241 (558)
+.+...++|+.+++.+.+.+. + ..|||+.|++.+++.++..+..+
T Consensus 163 ~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 163 IAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 988777778777766554432 1 25899999988776655444433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=198.79 Aligned_cols=170 Identities=15% Similarity=0.100 Sum_probs=136.3
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
..+|.+.......+....+.+....+++.++ +++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 3456666666777777777666677788888 57899999999999999999999999999999999 999999999998
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
..++.+++...... ..+.+.+++.|+++|+|.+...+...+.+.+.+|+++ |++
T Consensus 88 ~~~~~~~~~~~~~~--------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~ 141 (402)
T TIGR00897 88 WCVGHAAFIVFGLG--------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSS 141 (402)
T ss_pred HHHHHHHHHHHhcc--------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHH
Confidence 88887655321110 0236778889999999988877777788889998877 999
Q ss_pred hhhHHHHHHHHHH-HhhhhhhheecccccchhhhHHHHH
Q 008632 194 FFNWWYFGISFGA-NSTILVVIYIQDNLNWALGFGIPCA 231 (558)
Q Consensus 194 ~~~~~~~~~~~g~-~~~~~~~~~l~~~~g~~~~f~~~~~ 231 (558)
+.++++.+.++|. .++|.+++.+.+..||+..++....
T Consensus 142 ~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 142 AVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 9999999999996 6899999998888887655554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-21 Score=201.57 Aligned_cols=163 Identities=14% Similarity=0.080 Sum_probs=132.3
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHH
Q 008632 38 AASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILG 117 (558)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~ 117 (558)
.++.+....++..++...+...++.. .+++|.++.+.+++.+.+.+...++.++.|+++||+ ||||+++.+.++..++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence 34444555555555444444444444 468899999999999999999999999999999999 9999999999999888
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH
Q 008632 118 LSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (558)
.+++.+..+ .++.|+++|++.++..|+..+++.|.+|+++ |+++.++
T Consensus 82 ~~~~~~~~~---------------------------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~ 128 (393)
T PRK11195 82 CLLMLFGIH---------------------------PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGW 128 (393)
T ss_pred HHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 887766533 2678999999999999999999999999887 9999999
Q ss_pred HHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHH
Q 008632 198 WYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAA 236 (558)
Q Consensus 198 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~ 236 (558)
.+...++|..+||.++|.+.+. .|+..+.+.+.+.+++
T Consensus 129 ~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 129 MEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 4777766555444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-21 Score=199.13 Aligned_cols=174 Identities=11% Similarity=0.091 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHH-HHHHHHHHHHHHhHhhcchhHHHH-HHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSG-TASLLPLLGAFLADSFLGRFRTIV-VASLIYIL 116 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~-~~~~~~~i 116 (558)
.+......++...+...+.+.++.|+++++|.|..+.+++.+...+ ...++++++|+ +||+ ||||.++ .+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVL 94 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHH
Confidence 4444555777778877788999999999999999999999876655 45555655566 9999 9988754 45555556
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+..+..++.+ .+.+++.+.+.+...+...|....+..|..+++++ ..+...+
T Consensus 95 ~~~~~~~~~~------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 146 (393)
T PRK15011 95 ACTLFAWNRN------------------------YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR----EAVMFSS 146 (393)
T ss_pred HHHHHHHhhH------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc----hHHHHHH
Confidence 6666666544 55555554444434445667777777776665441 0234457
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
+.+.+.++|..++|.+++++.+++|||..|++.++..++..+..+.
T Consensus 147 ~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 147 FLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 8888899999999999999998899999998887765554444333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=199.49 Aligned_cols=402 Identities=12% Similarity=0.024 Sum_probs=249.9
Q ss_pred hhHHHHHHHHHHHHhhhhH---HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGIS---SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~---~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
-+-++...++...++|..- ....+++.++.++|..|.|++.+.+++++.++-.+.|.++||. +.|+.+-.++++.+
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHH
Confidence 3444455555555666543 3455678889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
+..++++++++ .+.+.+..++.|..+|.-.|++...++.++++++ ||+..
T Consensus 106 i~nil~Gfs~s------------------------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~ 155 (448)
T COG2271 106 IVNILFGFSPS------------------------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWW 155 (448)
T ss_pred HHHHHHhhhhH------------------------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceE
Confidence 99999999876 8888899999999999999999999999999998 99999
Q ss_pred hHHHHHHHHHHHhhhhhh--heecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhc
Q 008632 196 NWWYFGISFGANSTILVV--IYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTR 273 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~--~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (558)
++++...|+|+.+.|++. +++..+.+||..|+.++++.++..++.+..-++. |++ .-+.++.+-. +++
T Consensus 156 siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~----Pqs--~GLP~ie~~~----~d~ 225 (448)
T COG2271 156 SIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR----PQS--EGLPPIEEYR----GDP 225 (448)
T ss_pred EEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC----ccc--cCCCCHHHhh----cCc
Confidence 999999999999999999 8999888999999999988655444433322221 111 1111100000 000
Q ss_pred cccccchhhhhcccchhhHHhhhhcCCCCCCCCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeecccc
Q 008632 274 KATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKL-CTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATM 352 (558)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (558)
.|..+++.+. ...+.++ +.+-..+++..+...+...+...+=..+..+.+.++.+. .+.
T Consensus 226 ------------------~e~~~~~~~~-~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-k~~ 285 (448)
T COG2271 226 ------------------LEIYEEEKEN-EGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-KGF 285 (448)
T ss_pred ------------------hhhhhhhccC-CCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-cCC
Confidence 0000000000 0011111 111112233334444555556666666666665555432 111
Q ss_pred CcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008632 353 DRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAK 432 (558)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 432 (558)
+. ..+.+.....-...+....+.+++.|++-|.++ ...-.+.+++..++++.+-..
T Consensus 286 s~-------~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR--------~p~~~i~~~~i~~~~~~~w~~--------- 341 (448)
T COG2271 286 SL-------VKANWAISLFEVAGLPGTLLAGWLSDKLFKGRR--------GPMALIFMLLITASLVLYWLA--------- 341 (448)
T ss_pred CH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhccccc--------chHHHHHHHHHHHHHHHHHcC---------
Confidence 11 122333334445555566667777776653321 011222222222332222221
Q ss_pred hhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhc
Q 008632 433 EYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV-GGFLSSILVSIINEAT 511 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~-g~~ig~~~~~~i~~~~ 511 (558)
+..+.++..+.+++.|+..-.-..-.-....|..|++.-|++.|+...+..+ |...+....+++.|.
T Consensus 342 -----------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~- 409 (448)
T COG2271 342 -----------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT- 409 (448)
T ss_pred -----------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec-
Confidence 1134455555545444433221111112466899999999999998877777 777777777777653
Q ss_pred cCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 008632 512 SRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 552 (558)
Q Consensus 512 ~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~ 552 (558)
.+| ...|.++.+.++++.++++.+.+
T Consensus 410 -----~gW----------~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 410 -----WGW----------DGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred -----CCC----------cchHHHHHHHHHHHHHHHHHHHh
Confidence 245 23456666666666666665554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=208.77 Aligned_cols=168 Identities=17% Similarity=0.224 Sum_probs=142.4
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
.+|+.+..+....++..+..... .....++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 34555555555555555555444 4444567789999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
.+++.+++.+..+ .+.+++.|++.|++.++..+...+++.|.+|+++ |++
T Consensus 95 ~~~~~~~~~~~~~------------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 144 (496)
T PRK03893 95 FSVGTLACGFAPG------------------------YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNK 144 (496)
T ss_pred HHHHHHHHHHHhH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 9999998888755 7889999999999999999999999999999877 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHH
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFM 233 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~ 233 (558)
+.++++.+.++|..++|.+.+.+.+..+||+.|++..+..
T Consensus 145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~ 184 (496)
T PRK03893 145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI 184 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999899999998754433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=203.91 Aligned_cols=151 Identities=14% Similarity=0.181 Sum_probs=133.2
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 008632 58 SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQN 137 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (558)
....+++++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.++.+
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~----------- 82 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFSTS----------- 82 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhhh-----------
Confidence 3344567889999999999999999999999999999999999 9999999999999999999888755
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhh-hhhhee
Q 008632 138 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTI-LVVIYI 216 (558)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l 216 (558)
.+.+++.|++.|++.+...+...+++.|.+|+++ |+++.++.+...++|..++| ++++.+
T Consensus 83 -------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (379)
T TIGR00881 83 -------------LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGI 143 (379)
T ss_pred -------------HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999887 99999999999999999999 577777
Q ss_pred cccccchhhhHHHHHHHHHHHHH
Q 008632 217 QDNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 217 ~~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
.+..+|++.|++.+++.++..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~ 166 (379)
T TIGR00881 144 AELYSWHWVFIVPGIIAIIVSLI 166 (379)
T ss_pred HhcCCchhHHHHHHHHHHHHHHH
Confidence 77789999998777665544333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=196.78 Aligned_cols=385 Identities=12% Similarity=0.004 Sum_probs=231.4
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhcc-ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTG-QLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
|.++ +....+...|..+...+.+...+.+ ++|+|..|.+++.+.+.+.+.++.++.|++.||+ |.|+++..+.++..
T Consensus 34 r~l~-~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLW-ISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 4444 3444455556666666666667655 8999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
+..++++++...+ ..+++.+++.|++.|++ |...+.....+++++|+++ ||++.
T Consensus 112 i~~~~~~~a~~~~-------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~ 165 (462)
T PRK15034 112 IPCVWLGIAVQNP-------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSAL 165 (462)
T ss_pred HHHHHHHHHHccc-------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHH
Confidence 9888888751100 02388899999999998 6677889999999999988 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheec-----c-------------cccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCC
Q 008632 196 NWWYFGISFGANSTILVVIYIQ-----D-------------NLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRN 257 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~-----~-------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (558)
+++....++|..+++++.+.+. . ..+|+.++++-.++.+++.+..++..++.+ .++ .
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~---~~~--~ 240 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA---SSR--A 240 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---ccc--c
Confidence 9997666777665554443322 1 234666666555555444444443322211 111 1
Q ss_pred hhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 258 PFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIV 337 (558)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (558)
.+++..+ .+| ++++++..+.++.....+...
T Consensus 241 ~~~~~~~----vlk---------------------------------------------~~~~Wllslly~~tFG~fvg~ 271 (462)
T PRK15034 241 SIADQLP----VLQ---------------------------------------------RLHLWLLSLLYLATFGSFIGF 271 (462)
T ss_pred CHHHHHH----HhC---------------------------------------------CCchhHHHHHHHHHHHHHHHH
Confidence 2221111 111 122222222232222222222
Q ss_pred hhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHH
Q 008632 338 FAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISM 417 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~ 417 (558)
....+.+... ... .........+..+...+..|+.+++.||+++|+ .+.++.+++.+..
T Consensus 272 s~~lp~~~~~-------~~~---~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~-----------vl~~~~i~~~i~~ 330 (462)
T PRK15034 272 SAGFAMLAKT-------QFP---DVNILRLAFFGPFIGAIARSVGGAISDKFGGVR-----------VTLINFIFMAIFS 330 (462)
T ss_pred HHHHHHHHHH-------HcC---hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH-----------HHHHHHHHHHHHH
Confidence 2223222211 000 011111122334555566777777777665553 4555555444443
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCCh------------------
Q 008632 418 VVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK------------------ 479 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~------------------ 479 (558)
........ . ++..+.+...+.++...++.++.+.+.+.++.+.+|+
T Consensus 331 ~~~~l~lp-------~---------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~ 394 (462)
T PRK15034 331 ALLFLTLP-------G---------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQR 394 (462)
T ss_pred HHHHHHhc-------c---------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhh
Confidence 22221110 0 0113444444444444455555554555555566664
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 480 ---ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 480 ---~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
++-|.+.|+......+|+++-|.+.+...+.++ .+...|+.+.+..+++.++.|.+..|..
T Consensus 395 ~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g---------------~~~~~~~~~~~~~~~~~~~~w~~y~r~~ 458 (462)
T PRK15034 395 EAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG---------------SPVGAMKVFLIFYIVCVLLTWLVYGRRK 458 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC---------------CcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 257788888888888988888888888866442 2345678888888888888888766554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=196.54 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=132.7
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 008632 58 SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQN 137 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (558)
+.+|. +.+++|.+..+.++..+.+.++..++.++.|+++||+ |||++++.+.++..++.+++.++++
T Consensus 37 p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~----------- 103 (413)
T PRK15403 37 PGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTTS----------- 103 (413)
T ss_pred cCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcCC-----------
Confidence 33443 6678999999999999999999999999999999999 9999999999999999998888754
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheec
Q 008632 138 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ 217 (558)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 217 (558)
.+.++++|+++|++.+...+.....+.|.+|+++ |++.+++.+...++|..+||.+++.+.
T Consensus 104 -------------~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~ 164 (413)
T PRK15403 104 -------------MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALM 164 (413)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988766677788899999887 999999999999999999999999998
Q ss_pred ccccchhhhHHHHHHHHHHHHHHH
Q 008632 218 DNLNWALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 218 ~~~g~~~~f~~~~~~~~~~~~~~~ 241 (558)
++.|||+.|++.++..+++.+..+
T Consensus 165 ~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 165 HFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHH
Confidence 888999999988776665554433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-20 Score=193.22 Aligned_cols=363 Identities=9% Similarity=-0.067 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH-HHHHHH-
Q 008632 42 IIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI-YILGLS- 119 (558)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~i~~~- 119 (558)
+....+....++-...+++|.|++ ++|.|..+.+++.+.+.+...+++++.|.++||+ ||++.......+ ..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAAA 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH
Confidence 333444444445556788888886 6899999999999999999999999999999998 985543222211 111111
Q ss_pred HHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHH
Q 008632 120 MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWY 199 (558)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 199 (558)
++..++ +.+.+++.|.+++.+.+...|...++..|. .++ |++.++...
T Consensus 87 ~~~~~~------------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~ 134 (382)
T TIGR00902 87 FSAGAH------------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVR 134 (382)
T ss_pred HHHhhh------------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHH
Confidence 222332 378888999999988888878777776443 233 889999999
Q ss_pred HHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccc
Q 008632 200 FGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLAS 279 (558)
Q Consensus 200 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (558)
...++|..++|.+++.+.+++|||..|++.....++.... +...++.+++++++ +....
T Consensus 135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~------------------ 193 (382)
T TIGR00902 135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTIPPKDAIP--EDESQ------------------ 193 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCCCCCcccc--ccccc------------------
Confidence 9999999999999999999999999988765543333222 22222111100000 00000
Q ss_pred hhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccc
Q 008632 280 EDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRS 359 (558)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (558)
+..+. .+..++++.+......++........+...+.++ . + .| .
T Consensus 194 -------~~~~~--------------------~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l-~-----~--~g-~ 237 (382)
T TIGR00902 194 -------GDSAF--------------------IALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYW-Q-----A--AG-I 237 (382)
T ss_pred -------cchhH--------------------HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----H--CC-C
Confidence 00000 0001112222222222222333323322222111 1 1 11 0
Q ss_pred cccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 008632 360 IKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDK 439 (558)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (558)
-....+.......+..++..++.+++ .|| .+.++.+..+.++..+.++.++..
T Consensus 238 s~~~~g~l~~~~~~~~i~~~~~~~~l----~~r-------~g~~~~l~~~~~~~~~~~~~~~~~---------------- 290 (382)
T TIGR00902 238 SASATGLLWGIGVLAEIIIFAFSNKL----FQN-------CSARDLLLISAIACVGRWAIIGAI---------------- 290 (382)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHhHHH----Hhh-------CCHHHHHHHHHHHHHHHHHHHHhH----------------
Confidence 01112233334445555555555554 444 234556788888888888777654
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 008632 440 PNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINEATSRDGGDS 518 (558)
Q Consensus 440 ~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~ig~~~~~~i~~~~~~~~~~~ 518 (558)
.+.+.+.+...+.++.++...+....++.+. |++.|++++++++ ....+|..+++.+.|.+.|..+
T Consensus 291 ------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g------ 357 (382)
T TIGR00902 291 ------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG------ 357 (382)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 4556667777899999999887788899988 9999999999987 5778999999999999986421
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHH
Q 008632 519 WFADNLNRAHLDYFYWLLAALSAGGLLA 546 (558)
Q Consensus 519 w~~~~~~~~~~~~~~~~~a~~~~i~~~~ 546 (558)
...|++.+++++++.++
T Consensus 358 -----------~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 -----------AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred -----------HHHHHHHHHHHHHHHHH
Confidence 14577788877766443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=196.52 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=142.0
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
.+|.++.+..+..+.........+.+|. +.+++|.|..+.+++.+.+.+...++.++.|+++||+ |||+.+..+.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 4566666666666666555555555554 4578999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++.+++...++ .+.+++.|++.|++.+...+....+..|.+++++ ++++
T Consensus 84 ~~~~~~~~~~~~------------------------~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~ 133 (394)
T PRK11652 84 ILGTLVALFAHS------------------------LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHA 133 (394)
T ss_pred HHHHHHHHHHcc------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHH
Confidence 998888877644 7889999999999998877777788888888766 8999
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAA 236 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~ 236 (558)
.++++.+..++..++|.+++.+.+..|||+.|++.++..++.
T Consensus 134 ~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 134 NSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 999999999999999999999988889999998876654443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=198.81 Aligned_cols=172 Identities=13% Similarity=0.134 Sum_probs=124.2
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHH-HHHHHHH-----HHHHHHHHHHHhHhhcchhHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAA-VNVWSGT-----ASLLPLLGAFLADSFLGRFRTIVV 109 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~-~~~~~~~-----~~~~~~~~G~laDr~~Grr~~~~~ 109 (558)
++....+....+++.+.... .....+.++++++.++.+.+.. .+...+. ..++.++.|+++||+ ||||.++.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence 34444455555555555444 3455557888999887765433 2222222 235788899999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhh
Q 008632 110 ASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERR 189 (558)
Q Consensus 110 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~ 189 (558)
+.++..++.+++.++++...+.. .....++++|+++|++.|...+....+++|.+|+++
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~----------------~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~----- 150 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATIGL----------------AAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR----- 150 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHH----------------HHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc-----
Confidence 99999999999988754110000 001257889999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhee--------cccccchhhhHHHHH
Q 008632 190 AKSSFFNWWYFGISFGANSTILVVIYI--------QDNLNWALGFGIPCA 231 (558)
Q Consensus 190 ~r~~~~~~~~~~~~~g~~~~~~~~~~l--------~~~~g~~~~f~~~~~ 231 (558)
|+++.+++....++|..+++.+++.+ .+.+|||++|++...
T Consensus 151 -rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 -KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 99999998888888877777766654 246799999987543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=195.36 Aligned_cols=158 Identities=16% Similarity=0.239 Sum_probs=132.9
Q ss_pred HhhhhHHHHHHH--hccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 52 AYYGISSNLITY--LTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITL 129 (558)
Q Consensus 52 ~~~~~~~~l~~y--l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 129 (558)
.++......|.+ +++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.+++.+..+
T Consensus 18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~--- 93 (401)
T PRK11043 18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVES--- 93 (401)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhcC---
Confidence 333333444433 6789999999999999999999999999999999999 9999999999888888888877644
Q ss_pred cccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhh
Q 008632 130 LSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANST 209 (558)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 209 (558)
.+.+++.|+++|++.+...+...+++.|.+|+++ +++.++..+...++|..++
T Consensus 94 ---------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g 146 (401)
T PRK11043 94 ---------------------AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALA 146 (401)
T ss_pred ---------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHH
Confidence 7888999999999988877778888999999877 8888888888889999999
Q ss_pred hhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008632 210 ILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 210 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
|.+++++.+..||++.|++.++..++..+..
T Consensus 147 ~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 177 (401)
T PRK11043 147 PLLGAWLLNHFGWQAIFATLFAITLLLILPT 177 (401)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 9999999988999999987776655544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=192.68 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=135.5
Q ss_pred hhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008632 55 GISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSD 134 (558)
Q Consensus 55 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 134 (558)
.+.+.+|.+.+ ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..++.+.++
T Consensus 9 ~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~~-------- 78 (377)
T PRK11102 9 MYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQT-------- 78 (377)
T ss_pred HHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 34566776654 7999999999999999999999999999999998 9999999999999999998887654
Q ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 008632 135 CQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI 214 (558)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 214 (558)
.+.+++.|+++|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++
T Consensus 79 ----------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~ 136 (377)
T PRK11102 79 ----------------IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGG 136 (377)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999998999999999999887 999999999999999999999999
Q ss_pred eecccccchhhhHHHHHHHHHHHHHH
Q 008632 215 YIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 215 ~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
.+.+..+|++.|++.+...++..+..
T Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 137 WLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 99988899999987776655544433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=192.41 Aligned_cols=390 Identities=13% Similarity=0.060 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcch-hHHHHHHHHHHHHHHHH
Q 008632 42 IIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGR-FRTIVVASLIYILGLSM 120 (558)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~~~~~~~~~i~~~~ 120 (558)
+.+..++...++-.+.++++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.++..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence 33444555556666779999999999999999999999999999999999999999998 65 77888777777777777
Q ss_pred HHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccc--------cCCCCCChhhhhhhh
Q 008632 121 MTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGA--------DQFDAQNPQERRAKS 192 (558)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~--------~~~~~~~~~~~~~r~ 192 (558)
..+.++ .+.+.+.|++.+++.+...+...+... |...... |.
T Consensus 86 ~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~ 135 (418)
T TIGR00889 86 AAQVTT------------------------PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PI 135 (418)
T ss_pred HHHhcC------------------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ce
Confidence 666543 667778888888877666555544321 2222222 55
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhh
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKT 272 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (558)
|.++ ++|..++|.+++.+.....|. +|++.++..++..+.. ...++.++ ++++++...++..
T Consensus 136 r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~-~~~~e~~~-~~~~~~~~~~~~~--------- 197 (418)
T TIGR00889 136 RVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFA-LTLPDIPV-AKSTAKMSIKVML--------- 197 (418)
T ss_pred eeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHH-hcCCCCCC-CccccccCHHHHh---------
Confidence 5444 478888898888774433344 3555554444433322 22222110 1111000000000
Q ss_pred ccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeecccc
Q 008632 273 RKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATM 352 (558)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (558)
..+..+. .++++.+...+..++........+...+.++.. ...
T Consensus 198 ---------------~~~~~~~--------------------~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~ 240 (418)
T TIGR00889 198 ---------------GLDAFIL--------------------FKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE--FGR 240 (418)
T ss_pred ---------------hhhHHHH--------------------hcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH--hcc
Confidence 0000000 000110111111111111111111111111110 000
Q ss_pred Cccccccc-ccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 353 DRTITRSI-KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA 431 (558)
Q Consensus 353 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 431 (558)
....+.++ ....+.......+..++...+.+++.+++++| +.+..+.++.++++.++.....
T Consensus 241 ~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~v~~~l~~~~~~------ 303 (418)
T TIGR00889 241 NPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVMLLSLVAWALRFGFFAYGDP------ 303 (418)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHcCc------
Confidence 00000000 01223444555556666666666665655544 3577777777777655554210
Q ss_pred hhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 008632 432 KEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINEA 510 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~ig~~~~~~i~~~ 510 (558)
.....+.+++..++.+++++...+....++.+.+|++.|++++|+.+ +...+|..+||.+.|.+.|.
T Consensus 304 ------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~ 371 (418)
T TIGR00889 304 ------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEK 371 (418)
T ss_pred ------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 01123445566778888888877777788999999999999999997 67889999999999999875
Q ss_pred ccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 511 TSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 511 ~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
.+..+. .+++..|.+.+++.+++.++++++.|+.++
T Consensus 372 ~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 372 MFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred hccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 432111 123567888888888888888888887654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=205.11 Aligned_cols=152 Identities=13% Similarity=0.160 Sum_probs=125.0
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 008632 60 LITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNN 139 (558)
Q Consensus 60 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 139 (558)
..+++++ +|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.+.+..
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------ 114 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA------------ 114 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc------------
Confidence 3446665 599999999999999999999999999999999 99999999988888888776654210
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhe-ecc
Q 008632 140 TAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIY-IQD 218 (558)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-l~~ 218 (558)
..+.+.+++.|++.|++.|...+.....+.|.+|+++ |++++++++.+.++|+.+++.+.+. +..
T Consensus 115 --------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~ 180 (438)
T TIGR00712 115 --------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAW 180 (438)
T ss_pred --------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 0225677888999999999988888899999999988 9999999999999999998877665 444
Q ss_pred cccchhhhHHHHHHHHHHHHH
Q 008632 219 NLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 219 ~~g~~~~f~~~~~~~~~~~~~ 239 (558)
..+||..|++.++..++..+.
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 568999999877765554433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-22 Score=200.02 Aligned_cols=178 Identities=19% Similarity=0.220 Sum_probs=157.0
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
..++.+..+..++++++..=|.+...++ -+++.+|.+++..|++...+.+...++.|+.|+++||+ .||+++.+|..+
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~-~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i 107 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLK-EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI 107 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhH-HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence 3345556666778888877777766444 46788999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
+.+..+.++++.. +|++.+.|.+.|+|.+...++.+++++|.+|+++ |++
T Consensus 108 W~~Av~~~~fs~~------------------------Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~ 157 (493)
T KOG1330|consen 108 WTLAVFASGFSNH------------------------FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSR 157 (493)
T ss_pred HHHHHHHHHHHHH------------------------HHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhH
Confidence 9999999999855 9999999999999999999999999999999998 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHHHc
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFLLG 243 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~ 243 (558)
+++++|++.++|..+|.++++.+.++.+ ||+.|...+++.++..++.++.
T Consensus 158 ~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 158 VLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred HHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence 9999999999999999999999988777 9999998888766655554443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-20 Score=198.60 Aligned_cols=412 Identities=15% Similarity=0.132 Sum_probs=238.4
Q ss_pred hhHHHHHHHhcccc-----CCCh--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008632 55 GISSNLITYLTGQL-----GEST--ATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALI 127 (558)
Q Consensus 55 ~~~~~l~~yl~~~~-----~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~ 127 (558)
+..+....++++.. ..+. .+.+++.+...++..++.++.|+++|++ |||++++.+.+++.+|.+++.++.+
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~~- 141 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAPS- 141 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 45555555555422 1222 3458999999999999999999999999 9999999999999999999999966
Q ss_pred hhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHH
Q 008632 128 TLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGAN 207 (558)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 207 (558)
..+++++|+++|+|.|+.....+.+++|..|.+. ||...+..+....+|..
T Consensus 142 -----------------------~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~ 192 (513)
T KOG0254|consen 142 -----------------------WYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGIL 192 (513)
T ss_pred -----------------------HHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999988 99999999999999999
Q ss_pred hhhhhhheeccc-ccchhhhHHHHHHHHHHHHHHHH--cCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhh
Q 008632 208 STILVVIYIQDN-LNWALGFGIPCAFMVAALVLFLL--GTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQ 284 (558)
Q Consensus 208 ~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (558)
++.+++....+. .+||..+.+..+..++..+.+++ ..|++..+. ....+..+.+.......+ ++
T Consensus 193 ~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~-----g~~~~a~~~l~~l~g~~~--------~~ 259 (513)
T KOG0254|consen 193 LGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEK-----GRLEEAKRSLKRLRGLSP--------ED 259 (513)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHc-----CChHHHHHHHHHHhCCCC--------cc
Confidence 996555554432 48998887766655544444332 233322221 122233333332222111 11
Q ss_pred cccchhhHH--hhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc--eeeeeccccCccccccc
Q 008632 285 SSQQFKFLN--KALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTT--FFTKQGATMDRTITRSI 360 (558)
Q Consensus 285 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 360 (558)
.+.+.+.+. ...+.........+.++.. ...+|+....+.+.. ++|... ....+...+-... +.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~--------fqq~tG~~~~~~Y~~~if~~~--g~ 327 (513)
T KOG0254|consen 260 VEVELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQL--------FQQLTGINYVFYYSTTIFKSA--GL 327 (513)
T ss_pred hHHHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHH--------HHHHhCCceEEeehHHHHHhc--CC
Confidence 111111111 1111110011111222221 112333332222222 222221 1111111111111 12
Q ss_pred ccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 008632 361 KIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKP 440 (558)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (558)
..+.............+...+...+.|+++||. .++.|...+.+++++.+.......... .
T Consensus 328 ~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~-----------lll~s~~~m~~~~~~~~~~~~~~~~~~--------~ 388 (513)
T KOG0254|consen 328 KSDTFLASIILGVVNFLGTLVATYLVDRFGRRK-----------LLLFGAAGMSICLVILAVVGVFALYYP--------N 388 (513)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHhHHHHHHHHHHHHHHHHHhccCC--------C
Confidence 222112122222222222222345555556654 588888888888887776643211000 0
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcc
Q 008632 441 NVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWF 520 (558)
Q Consensus 441 ~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~ 520 (558)
+......+.+.....+...+..+.. +..+.+..|.+|.+.|+.+.++...++++.+.+-........+..+
T Consensus 389 ~~~~~~~~~~~~~~~~v~~f~~g~g-~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-------- 459 (513)
T KOG0254|consen 389 SSKGAGWLAIVFLCLFIFSFAIGWG-PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-------- 459 (513)
T ss_pred cccchhHHHHHHHHHHHHHHhcccc-cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 0001111222222222223333333 3333578899999999999999999999999887666665543210
Q ss_pred ccccccchhHHHHHHHHHHHHHHHH-HHHHhhcccccCC
Q 008632 521 ADNLNRAHLDYFYWLLAALSAGGLL-AFLYFAKSYNREN 558 (558)
Q Consensus 521 ~~~~~~~~~~~~~~~~a~~~~i~~~-~~~~~~~~~~~~~ 558 (558)
....|+.+++++.+... +.+++.+|+++++
T Consensus 460 --------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 460 --------IGGTFGYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred --------ccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence 12357777777777777 7888899998763
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=190.99 Aligned_cols=171 Identities=16% Similarity=0.134 Sum_probs=142.1
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
|.+.......+....+.......+|. +.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.++.+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i 80 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFII 80 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHH
Confidence 44444455555555555555555555 4567999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+..++..+++ .+.+++.|+++|++.+...+...+++.|.+|+++ |+++.+
T Consensus 81 ~~~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 130 (392)
T PRK10473 81 ASLLCSLAET------------------------SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLS 130 (392)
T ss_pred HHHHHHHhCc------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 9888877644 6778889999999999988889999999999887 999999
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
+.+...++|..++|.+++.+.+..+|++.|++.++..++..+.
T Consensus 131 ~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 131 LLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888889999998877665544443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-20 Score=192.07 Aligned_cols=391 Identities=12% Similarity=0.039 Sum_probs=228.6
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
|.+|.+....++...++..+.++++.|+++++|++..+.+++.+.+.+...++.++.|+++||+ |||+.++.+.+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 5567777777777777888889999999999999999999999999999999999999999999 999999887766555
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+..........+... ......+++.+++.+++.+...+....+..|..+ + ++..++
T Consensus 81 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g 136 (396)
T TIGR00882 81 LFAPFFIYVFGPLLQ----------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYG 136 (396)
T ss_pred HHHHHHHHHhhhHHH----------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccc
Confidence 443322110000000 0113345667888888888877777766655432 1 445667
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhcccc
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKAT 276 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (558)
......++|..++|.+++.+.+ .+|+..|++.+.+.++..+..+...++.+++ + + .++. .++.
T Consensus 137 ~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~~~-------~~~~--- 199 (396)
T TIGR00882 137 KARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS---A--T-VANA-------LGAN--- 199 (396)
T ss_pred hhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh---h--h-hhcc-------cccc---
Confidence 7777889999999999998865 5999999887776555444433322221110 0 0 0000 0000
Q ss_pred ccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCccc
Q 008632 277 LASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTI 356 (558)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (558)
.+..+..+.. +..++++.+...+..+.....+.....+.+.++..... ....
T Consensus 200 ------~~~~~~~~~~--------------------~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~ 251 (396)
T TIGR00882 200 ------ASAFSLKLAL--------------------ELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA--TPQQ 251 (396)
T ss_pred ------cCCCCHHHHH--------------------HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccc
Confidence 0000000000 00011111111111111111111121222222211000 0110
Q ss_pred ccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 008632 357 TRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGL 436 (558)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 436 (558)
+ ....+.......+...+.....+++.+++++| +.+..+.++.++.+......
T Consensus 252 ~---~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-----------~~l~~~~~l~~l~~~~~~~~------------- 304 (396)
T TIGR00882 252 G---TRVFGYVTTMGELLNALIMFCAPLIINRIGAK-----------NALLIAGTIMSVRIIGSSFA------------- 304 (396)
T ss_pred c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHHhc-------------
Confidence 0 01112333344444445555555555554444 24666666666665554432
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCC
Q 008632 437 IDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI-YMSVLGVGGFLSSILVSIINEATSRDG 515 (558)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~ig~~~~~~i~~~~~~~~ 515 (558)
.+.+++.....+.+++.........++..+..|++.++++.+. +++...+|+.+++.+.|.+.|..
T Consensus 305 ---------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~---- 371 (396)
T TIGR00882 305 ---------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI---- 371 (396)
T ss_pred ---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc----
Confidence 3444555566677777666555555778888899998887776 67889999999999999998632
Q ss_pred CCCccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 008632 516 GDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLY 549 (558)
Q Consensus 516 ~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~ 549 (558)
++...|.+.+++.++..+...+
T Consensus 372 ------------G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 372 ------------GFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 2345677777777666555443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-20 Score=192.73 Aligned_cols=390 Identities=13% Similarity=0.082 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHH
Q 008632 76 AAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFI 155 (558)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (558)
+.+.+.+.++++++...+|+++||+ |||..++++.++..++.+++.++... ....+++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~---------------------~~~e~li 120 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA---------------------PSFEMLI 120 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHH
Confidence 5567889999999999999999999 99999999999988888888877542 3378999
Q ss_pred HHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhh--eecccccchhhhHHHHHHH
Q 008632 156 FSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI--YIQDNLNWALGFGIPCAFM 233 (558)
Q Consensus 156 ~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~--~l~~~~g~~~~f~~~~~~~ 233 (558)
++|++.|+..|......+-++.|..|.+. ||..-.....+..+|..++..++. .+.....|.+.+.+..+..
T Consensus 121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999965543 2334445988887777655
Q ss_pred HHHHHH--HHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhc-CCCCCCCCCCCC
Q 008632 234 VAALVL--FLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLA-TPDVSLEDGKLC 310 (558)
Q Consensus 234 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 310 (558)
++.++. ++...|++.-... +..++..+.+.....+.+ ++.+..+..+..++. .......++++.
T Consensus 195 ~~~l~~l~~~PESPk~Ll~~k----~~~~~A~~sl~~y~G~~~---------~~~~~e~~~~e~~~~~~~~~~~~sl~~~ 261 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLIKK----GDEEEARKALKFYRGKED---------VEAEIEEMLREIEEEELEKKKQISLRQL 261 (485)
T ss_pred HHHHHHHhcCCCCcchHHHHc----CCHHHHHHHHHHHhCCCc---------chhHHHHHHHHHHHhccccccCCcHHHH
Confidence 544433 3334555443311 112222222222111110 000000000111111 010122222222
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeee--eccccCccccccccc-ChhhhhhhhHHHHHHHHhhhhhhhh
Q 008632 311 TLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTK--QGATMDRTITRSIKI-PAASLQLFIGIGIITFIPIYDCIFV 387 (558)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (558)
.+++. .|+.+...+...+. +|..+.... ++..+-... |+.. .+.+.+.......++...+...+++
T Consensus 262 ~~~~~-lR~~~~i~~~v~~~--------qq~sGi~ai~~Yst~i~~~a--G~~~~~a~~an~~~g~v~~~~t~~~~~lid 330 (485)
T KOG0569|consen 262 LKNPT-LRRPLLIGIVVSFA--------QQFSGINAIFFYSTSIFKTA--GFTPEEAQYANLGIGIVNLLSTLVSPFLID 330 (485)
T ss_pred hcCcc-hhHHHHHHHHHHHH--------HHhcCcceeHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 22222222222111 122111100 001111111 1111 2233333334444444555556666
Q ss_pred hhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHH-h
Q 008632 388 PITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFT-I 466 (558)
Q Consensus 388 ~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~-~ 466 (558)
+.+||. .++.+..++.+..+++......... . .+...+..+++.+++.+.+.+. .
T Consensus 331 ~~gRRp-----------Lll~~~~~~~~~~~~~~~~~~l~~~-----~--------~~~~~y~~i~~~~~~~~~f~~G~g 386 (485)
T KOG0569|consen 331 RLGRRP-----------LLLISLSLMAVALLLMSIALFLSNS-----F--------GSWLSYLCIAAIFLFIISFAIGPG 386 (485)
T ss_pred hcCCcH-----------HHHHHHHHHHHHHHHHHHHHHHHHH-----h--------hhHHHHHHHHHHHHHHHhhhcCCC
Confidence 667764 4677777777776666555322110 0 0011222344555555555544 3
Q ss_pred hhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHH
Q 008632 467 VGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLA 546 (558)
Q Consensus 467 ~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~ 546 (558)
|..+-+.+|.+|++.|+.++++..+++++++++-....+.+.+..+ . ++|+++++.++++.+.
T Consensus 387 pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---------------~--~~filF~i~~~~~~i~ 449 (485)
T KOG0569|consen 387 PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---------------P--YVFILFVIPLAIFLIY 449 (485)
T ss_pred chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------c--hhhHHHHHHHHHHHHH
Confidence 5555689999999999999999999999999999999988875332 1 4688889999999999
Q ss_pred HHHhhcccccCC
Q 008632 547 FLYFAKSYNREN 558 (558)
Q Consensus 547 ~~~~~~~~~~~~ 558 (558)
.++..||+|+|+
T Consensus 450 ~~~~lPETkgr~ 461 (485)
T KOG0569|consen 450 LYRYLPETKGRT 461 (485)
T ss_pred HHHhCcccCCCC
Confidence 999999999874
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=193.90 Aligned_cols=360 Identities=17% Similarity=0.154 Sum_probs=236.3
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
|.+..+....++.+++......-++-++. +..-|+...+++.....+...+..+++|.++||+ .|||+++.+-++..+
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence 33444444445555555444444444444 4567889999999999999999999999999999 999999999888776
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
..+.+.+..... ..+.+.+++.-++.|++.+...|+.++++.|+.|+++ ..++.+
T Consensus 88 ~~~~L~~l~~~~-------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~a 142 (524)
T PF05977_consen 88 VALLLAVLAFFG-------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANA 142 (524)
T ss_pred HHHHHHHHHHhC-------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHH
Confidence 666555443211 1347888888999999999999999999999999888 999999
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhcccc
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKAT 276 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (558)
+.+...|+...+||.++|.+....|-.+.|.+.++..++.+..+...+++..+++.++ ++..+++...+.+..+++
T Consensus 143 l~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~-e~~~~~l~~G~ryv~~~~--- 218 (524)
T PF05977_consen 143 LNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPR-ERFFSALREGLRYVRSSP--- 218 (524)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccch-hhhhhhHHHHHHHHhcch---
Confidence 9999999999999999999998889888999888776665554444333221111111 011122222221111110
Q ss_pred ccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCccc
Q 008632 277 LASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTI 356 (558)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (558)
.-+..+.......+.. .... .....+.. +..
T Consensus 219 ---------------------------------------~l~~~l~~~~~~~l~~---~a~~-aLlPl~a~------~~l 249 (524)
T PF05977_consen 219 ---------------------------------------PLRSVLLRSFLFNLFA---SAVW-ALLPLFAR------DVL 249 (524)
T ss_pred ---------------------------------------HHHHHHHHHHHHHHhh---hHHH-HhhhHHHH------HHh
Confidence 0111111111111111 1111 11111111 111
Q ss_pred ccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 008632 357 TRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGL 436 (558)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 436 (558)
+ +-....+.+.+..+++.+++..+..++ .+|. +..+.+..+.++.+++++.+++.
T Consensus 250 ~-~~a~~yGll~a~~gvGai~Gal~~~~l----~~~~-------~~~~lv~~~~~~~a~~~~~lal~------------- 304 (524)
T PF05977_consen 250 G-GGASGYGLLLAAFGVGAILGALLLPRL----RRRL-------SSRRLVLLASLLFALALLLLALS------------- 304 (524)
T ss_pred C-CcHHHHHHHHHHHHHHHHHHHHHHHHh----hccc-------CcchhhHHHHHHHHHHHHHHhcc-------------
Confidence 1 111222344455555555555554443 3332 23345666777777777666654
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 437 IDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 510 (558)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~ 510 (558)
.+.+..++.+++.|++.........+.+++..|+++||++++++++....+..+|..+.|.+.+.
T Consensus 305 ---------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 305 ---------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH 369 (524)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788889999988888889999999999999999999999999999999999999864
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=192.30 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=120.7
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
..+..+..+.+...+........+| .+++++|.|+.+.++..+.+.++..++.++.|+++||+ |||+++..+.+++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYAL 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3334444444455555444444455 45899999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+.+++..... ..+++.++++|+++|+|.|...+..++++.|..|+++ |.+.++
T Consensus 104 ~~~l~~~~~~---------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s 156 (438)
T PRK10133 104 GAALFWPAAE---------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLN 156 (438)
T ss_pred HHHHHHHHHh---------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHH
Confidence 9988643211 0338889999999999999999999999998766655 666788
Q ss_pred HHHHHHHHHHHhhhhhhhee
Q 008632 197 WWYFGISFGANSTILVVIYI 216 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l 216 (558)
..+....+|..+++++++.+
T Consensus 157 ~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 157 LAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999887643
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=195.22 Aligned_cols=377 Identities=17% Similarity=0.159 Sum_probs=251.8
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCC
Q 008632 66 GQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCS 145 (558)
Q Consensus 66 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (558)
.+++++..+.+++.+.+..++.++++++|+++||+ |-|+++..+.++.++++++..++..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~------------------- 125 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS------------------- 125 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 36889999999999999999999999999999999 9999999999999999999999876
Q ss_pred CCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccc-ccchh
Q 008632 146 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN-LNWAL 224 (558)
Q Consensus 146 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~ 224 (558)
...+.+++.|++||++.|...|+...+.+.++|+++ |++..++.+.+..+|.+++..++|++.+. +||+.
T Consensus 126 ---~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s 196 (466)
T KOG2532|consen 126 ---IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS 196 (466)
T ss_pred ---hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence 345678999999999999999999999999999988 99999999999999999999999999988 99999
Q ss_pred hhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCCCC--
Q 008632 225 GFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDV-- 302 (558)
Q Consensus 225 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 302 (558)
+|++.+.+.++..++++....+.+.+++.- .++|.++++..+......
T Consensus 197 ifY~~g~~g~i~~~~w~~~~~d~P~~h~~i------------------------------s~~El~~I~~~k~~~~~~~~ 246 (466)
T KOG2532|consen 197 IFYVFGIVGLIWFILWFLFYSDSPSKHPNI------------------------------SEKELKYIEKGKSEAHVKKK 246 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCC------------------------------CHHHHHHHHhcccccccCCC
Confidence 999999887776666555433222221111 112223333332222111
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhh
Q 008632 303 SLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIY 382 (558)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (558)
...+|+.... ....+...+..+.....+....++.++++-+.. +.+. ...+.++++..+...+...+.
T Consensus 247 ~~vP~~~i~t----s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL-~f~v-------~~~G~~salP~l~~~~~k~~~ 314 (466)
T KOG2532|consen 247 PPVPYKAILT----SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL-GFDV-------RETGFLSALPFLAMAIVKFVA 314 (466)
T ss_pred CCCCHHHHHc----CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-CCCh-------hhhhHHHHHHHHHHHHHHHHH
Confidence 2334433221 222333334444444555555555555543211 1111 134567777777777777777
Q ss_pred hhhhhhhccccccCCCCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHH
Q 008632 383 DCIFVPITRYFTQNPSGITMLQ-RIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIA 461 (558)
Q Consensus 383 ~~~~~~~~~r~~~~~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 461 (558)
+.+.|++.+|.... ...++ .-.++....++.++..++... .+. +..+..+..+.+
T Consensus 315 g~lsD~l~~~~ls~---t~~rkifn~i~~~~~ai~l~~l~~~~~--------------------~~~-~~a~~~l~~~~~ 370 (466)
T KOG2532|consen 315 GQLSDRLTFRILSE---TTVRKIFNTIAFGGPAVFLLVLAFTSD--------------------EHR-LLAVILLTIAIG 370 (466)
T ss_pred HHHHHHHhhccCch---HhHHHHHHhHHHHHHHHHHHeeeecCC--------------------Ccc-hHHHHHHHHHHH
Confidence 77777776652111 11222 223444455555555554421 111 112221222223
Q ss_pred HHHHhhhhhhhhhccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHH
Q 008632 462 DVFTIVGLQEFFYDQI-PKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALS 540 (558)
Q Consensus 462 ~~~~~~~~~~~~~~~~-P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~ 540 (558)
......... +...+- -+++-+..+|+.++...++.+++|.+++.+.. .. ...+| +.+|++.+++.
T Consensus 371 ~~g~~~~Gf-~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~~eW----------~~VF~i~a~i~ 436 (466)
T KOG2532|consen 371 LSGFNISGF-YKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TREEW----------RIVFLIAAGIL 436 (466)
T ss_pred Hcccchhhh-HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CHHHH----------HHHHHHHHHHH
Confidence 222221111 222223 56779999999999999999999999998863 11 22355 67899999999
Q ss_pred HHHHHHHHHhh
Q 008632 541 AGGLLAFLYFA 551 (558)
Q Consensus 541 ~i~~~~~~~~~ 551 (558)
+++.+++.++.
T Consensus 437 ~~~~i~f~~f~ 447 (466)
T KOG2532|consen 437 IVGNIIFLFFG 447 (466)
T ss_pred HHhchheeEee
Confidence 99988888774
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=213.47 Aligned_cols=357 Identities=13% Similarity=0.064 Sum_probs=214.9
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGEST--ATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
.+.+...++..++.++...+....+..++.++++.+. ...+++.+.+.+...++.+++|+++||+ |||++++.+.++
T Consensus 8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~ 86 (1146)
T PRK08633 8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF 86 (1146)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence 3445555555555555554555555556655666554 4468888999999999999999999999 999999998877
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
.+++.++..++... .+++.+++.|+++|++.+...++..++++|.+|+++ |++
T Consensus 87 ~~~~~~~~~~~~~~---------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 139 (1146)
T PRK08633 87 EVGLTLLIVLAYYL---------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSR 139 (1146)
T ss_pred HHHHHHHHHHHHHH---------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chh
Confidence 66666665544220 237889999999999999999999999999999988 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheeccc--------c-cchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCC-CC---hhh
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDN--------L-NWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQ-RN---PFA 260 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~--------~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~ 260 (558)
++++.+.+.++|.++|+.+++++.+. + +|.+.+.+..+...+..+++....++.+......+ .. ..+
T Consensus 140 ~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (1146)
T PRK08633 140 ANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPK 219 (1146)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHH
Confidence 99999999999999999999988765 2 33333333332222222222222222111110000 00 000
Q ss_pred HHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 008632 261 RIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLR-LIPIWATCLVYAIVFA 339 (558)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 339 (558)
...+.+.. ....+.+.. .+...+..........
T Consensus 220 ~~~~~~~~----------------------------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1146)
T PRK08633 220 LLWRNLKL----------------------------------------------LRSDRVLWLAIIGLSYFWFISQLAQA 253 (1146)
T ss_pred HHHHHHHH----------------------------------------------HhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000111111 1111111111111111
Q ss_pred cccceeeeeccccCcccccccc-c-ChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHH
Q 008632 340 QYTTFFTKQGATMDRTITRSIK-I-PAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISM 417 (558)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~ 417 (558)
.++.++.. ..+ .. . ..+.+.....++.++...+.+++.++..++ +.+.++.++.++++
T Consensus 254 ~~~~~~~~-------~~g--~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~~ 313 (1146)
T PRK08633 254 NFPAYAKE-------VLG--LDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----------GLVPLGALGLALSL 313 (1146)
T ss_pred hhHHHHHH-------HhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----------cchhHHHHHHHHHH
Confidence 22211111 111 11 1 123344444455555555555553333222 23555666666665
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHH
Q 008632 418 VVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGG 497 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~ 497 (558)
+.+... .+.+..++..++.+++.+...+...+++.+..|++.||.++|+.++...+|.
T Consensus 314 ~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~ 371 (1146)
T PRK08633 314 FLLPTA----------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGM 371 (1146)
T ss_pred HHHHHh----------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHH
Confidence 555543 2445566677788888888777777899999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 008632 498 FLSSILVSIIN 508 (558)
Q Consensus 498 ~ig~~~~~~i~ 508 (558)
.+++.+.+.+.
T Consensus 372 ~~~~~~~~~l~ 382 (1146)
T PRK08633 372 LLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHH
Confidence 88877776664
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-19 Score=185.19 Aligned_cols=336 Identities=10% Similarity=0.008 Sum_probs=202.3
Q ss_pred HHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhH----HHHHHHHHHHHHHHHHH
Q 008632 47 VAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFR----TIVVASLIYILGLSMMT 122 (558)
Q Consensus 47 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~----~~~~~~~~~~i~~~~~~ 122 (558)
++-.+++..+.+.+|.|++ ++|.|..+.|++.+.+.+...++.++.|.++||+ |||+ .+.....+. ......
T Consensus 14 ~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~~ 89 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFWF 89 (382)
T ss_pred HHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHHH
Confidence 3333455567788889986 5899999999999999999999999999999999 9843 222221111 111111
Q ss_pred HHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHH
Q 008632 123 LLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGI 202 (558)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 202 (558)
.. .+.+.+++.|++.+++.+...+...++..+. .++ |++.++..+...
T Consensus 90 ~~------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~ 137 (382)
T PRK11128 90 GA------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWG 137 (382)
T ss_pred hc------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHH
Confidence 11 3378888899999999888888877776665 233 788888888888
Q ss_pred HHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhh
Q 008632 203 SFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDE 282 (558)
Q Consensus 203 ~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (558)
++|..+||.+++++.+++|||..|++.++..++..+... ..++.+ ++++++++.++
T Consensus 138 ~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~--------------------- 193 (382)
T PRK11128 138 SIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTIM--PQGESRQQESA--------------------- 193 (382)
T ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCCC--Ccccccccccc---------------------
Confidence 999999999999999999999999877755444433322 222111 11110000000
Q ss_pred hhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHH-HHHHHHHHHHHhhcccceeeeeccccCcccccccc
Q 008632 283 AQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIP-IWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK 361 (558)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (558)
...++ .+..+.|....... .++........+...+.+. . +.+.. .
T Consensus 194 ----~~~~~---------------------~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-----~~g~s---~ 239 (382)
T PRK11128 194 ----GWPAW---------------------KALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW-Q-----AAGYS---A 239 (382)
T ss_pred ----ccchH---------------------HHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH-H-----HCCCC---H
Confidence 00000 00111122222111 1221111111211111111 1 11110 1
Q ss_pred cChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 008632 362 IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPN 441 (558)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (558)
...+.......+..+....+.+++ .||. +.++.+..+.++.+++++.....
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~l~~~~~~~~~~~~~~~~~------------------ 290 (382)
T PRK11128 240 STIGYLWSLGVVAEVLIFAFSNRL----FRRW-------SARDLLLLSAICGVVRWGLMGST------------------ 290 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHC-------CHHHHHHHHHHHHHHHHHHHHhh------------------
Confidence 112333334444444444455554 3442 33445667777777776655543
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 008632 442 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINEA 510 (558)
Q Consensus 442 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~ig~~~~~~i~~~ 510 (558)
.+.+.+++..++.+++++...+....+..+. |++.+++.+++.+ ....+|..+|+.+.|.+.|.
T Consensus 291 ----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~ 355 (382)
T PRK11128 291 ----TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH 355 (382)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566677888999888888887888887 5666789999887 55677889999999999864
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-19 Score=188.82 Aligned_cols=355 Identities=13% Similarity=0.140 Sum_probs=215.5
Q ss_pred HHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhh---cchhH-HHHHHHHHHHHHHHHHHH
Q 008632 48 AERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSF---LGRFR-TIVVASLIYILGLSMMTL 123 (558)
Q Consensus 48 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~~~i~~~~~~~ 123 (558)
..+..+..+..+++.|+++++|+++.+.+++.+...+...+..|+.|+++||. +|||| .++.+.+..+++.+++..
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~ 89 (437)
T TIGR00792 10 GNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT 89 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh
Confidence 34444555667889999999999999999999999999999999999999983 27754 667777788877777765
Q ss_pred HHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCC-CChhhhhhhhhhhhHHHHHH
Q 008632 124 LALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDA-QNPQERRAKSSFFNWWYFGI 202 (558)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~ 202 (558)
.++. +.....+.+.+.+++.+++.+.......++..|..++ ++ |++..++.+.+.
T Consensus 90 ~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~~ 145 (437)
T TIGR00792 90 TPDF------------------SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFGA 145 (437)
T ss_pred CCCC------------------CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHHH
Confidence 4320 0012355667778888888888777888888898753 44 889999888888
Q ss_pred HHHHHhhhhhhheec-------ccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccc
Q 008632 203 SFGANSTILVVIYIQ-------DNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKA 275 (558)
Q Consensus 203 ~~g~~~~~~~~~~l~-------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (558)
++|..++..+.+.+. +..+|+..+.+.+++.++..+..+...++.+++.++++ ++..+..+.+..
T Consensus 146 ~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~------- 217 (437)
T TIGR00792 146 TLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI-EKKLSLKQIFKA------- 217 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc-ccCCCHHHHHHH-------
Confidence 888776655544332 34579998887776655554443332222111100100 000000000000
Q ss_pred cccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcc
Q 008632 276 TLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRT 355 (558)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (558)
..+.|.....+..................++...... .
T Consensus 218 ---------------------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 255 (437)
T TIGR00792 218 ---------------------------------------LFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG--D- 255 (437)
T ss_pred ---------------------------------------HhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC--C-
Confidence 0011122112111111111111222222222221110 0
Q ss_pred cccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 008632 356 ITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYG 435 (558)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 435 (558)
......+.....+..++..++..++.+++++| +.+..+.++..++++......
T Consensus 256 -----~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~----------- 308 (437)
T TIGR00792 256 -----PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----------ILFAGGILLMVLGYLIFFFAG----------- 308 (437)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHcc-----------
Confidence 11122333444566666677777775555544 346667766666665544321
Q ss_pred cCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008632 436 LIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVSIIN 508 (558)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~ 508 (558)
.+.+...+..++.+++.+...+..+++..+..| ++.+|.+.|+.++...+|..+++.+.+.+.
T Consensus 309 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 309 ----------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444555567777777776666677777655 567899999999999999999999999998
Q ss_pred hhccC
Q 008632 509 EATSR 513 (558)
Q Consensus 509 ~~~~~ 513 (558)
+..+.
T Consensus 379 ~~~G~ 383 (437)
T TIGR00792 379 GIIGY 383 (437)
T ss_pred HHcCC
Confidence 86543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=211.60 Aligned_cols=348 Identities=13% Similarity=0.047 Sum_probs=201.1
Q ss_pred HhccccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHH---HHHHHHHHHHHHHHhhhcccccccCC
Q 008632 63 YLTGQLGEST-ATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASL---IYILGLSMMTLLALITLLSSSDCQNN 138 (558)
Q Consensus 63 yl~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~ 138 (558)
.+.+..+.+. ...++..+.+.+...++.+++|+++||+ |||+++..... +.....+++....
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~~------------- 106 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHLN------------- 106 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 3444444433 4467788889999999999999999999 99997643222 2222222222222
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecc
Q 008632 139 NTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD 218 (558)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 218 (558)
+++.++++|+++|++.++..|+..+++.|++|+++ |++++++.+++.++|.++||+++|++.+
T Consensus 107 -----------s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 107 -----------SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred -----------hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38889999999999999999999999999999988 9999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCC--CChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhh
Q 008632 219 NLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQ--RNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKAL 296 (558)
Q Consensus 219 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (558)
..+|++.|....+..+++.++.+... +.+..++... .+...+..+.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 221 (1140)
T PRK06814 170 SGNFVILVALLMGIAVLGWLASLFIP-KTGNAAPDLKIDRNIIRSTITLLKYA--------------------------- 221 (1140)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhCC-CCCCCCCCCeeccchHHHHHHHHHHH---------------------------
Confidence 89999988554444444433333222 1111111100 00001100000000
Q ss_pred hcCCCCCCCCCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHH
Q 008632 297 LATPDVSLEDGKLCTLEDVEEAKALL-RLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGI 375 (558)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (558)
...+.+. ..+..+.....+.....+.+.++.. ..+ .-....+.+.....++.
T Consensus 222 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~g-~~~~~~g~~~~~~~~g~ 274 (1140)
T PRK06814 222 -------------------KADKRIWLAILGISWFWLVGAVVLSQLPLLAKE-------TLG-GDENVATLFLAVFSVGV 274 (1140)
T ss_pred -------------------hcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HcC-CchHHHHHHHHHHHHHH
Confidence 0111111 1111222222222222222222211 111 00112334445555666
Q ss_pred HHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHH
Q 008632 376 ITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQY 455 (558)
Q Consensus 376 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (558)
+++..+.+++.++..++ +.+..+.++.++..+..++..... ......+.-........+.+.+.+..
T Consensus 275 ~ig~~~~g~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1140)
T PRK06814 275 AVGSFLASKLSEGRITL-----------LYVPIGALLMGLFGLDLAFASSSV--PAEPAQLKSILVFLSKRHGWRILIDL 341 (1140)
T ss_pred HHHHHHHHHHhCCceee-----------eeehHHHHHHHHHHHHHHhccccc--ccccccccchhhhhcccccHHHHHHH
Confidence 66666666653322221 123333443333333222210000 00000000000000013445566777
Q ss_pred HHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 456 LLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 509 (558)
Q Consensus 456 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~ 509 (558)
++.|++.+...+...+++++.+|++.||+++|+.++.+.++..+++.+.+.+.+
T Consensus 342 ~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 342 FGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888887788999999999999999999999999999999999998864
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-20 Score=189.80 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=130.7
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGL 118 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~ 118 (558)
.+......+......+...+.+|.++++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 44444555555556666777777789999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHH-HhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH
Q 008632 119 SMMTLLA-LITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 119 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (558)
+++.+++ + .+.+++.|+++|++.+. .+...++++|.+|+++ |+++.++
T Consensus 82 ~~~~~~~~~------------------------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~ 130 (366)
T TIGR00886 82 LWAGLAVQS------------------------YSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGL 130 (366)
T ss_pred HHHHHHhhh------------------------HHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHH
Confidence 9888875 4 78889999999999665 4567788999999887 9999999
Q ss_pred HHHHHHHHHHhhhhhhheecc----------cccchhhhHH
Q 008632 198 WYFGISFGANSTILVVIYIQD----------NLNWALGFGI 228 (558)
Q Consensus 198 ~~~~~~~g~~~~~~~~~~l~~----------~~g~~~~f~~ 228 (558)
+....++|..+++.+++.+.. +.+||+.|++
T Consensus 131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 887778888777777665543 3479999843
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-19 Score=184.58 Aligned_cols=156 Identities=14% Similarity=0.204 Sum_probs=114.9
Q ss_pred HHHHHhccccC--CChHHHHHHHHHH-----HHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008632 59 NLITYLTGQLG--ESTATAAAAVNVW-----SGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLS 131 (558)
Q Consensus 59 ~l~~yl~~~~~--~s~~~~~~~~~~~-----~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 131 (558)
....++.+++. .++++.+.+.+.. .+...++.++.|+++||+ |||+++..+.++..++.+++.++++.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATIG 92 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhhH
Confidence 34445555543 4455555544432 223346789999999999 999999999999999998888765411000
Q ss_pred cccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhh
Q 008632 132 SSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTIL 211 (558)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 211 (558)
....+.+++.|+++|++.+...+..+.++.|.+|+++ |++..++.+.+..+|..+++.
T Consensus 93 ----------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~ 150 (394)
T TIGR00883 93 ----------------IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAAL 150 (394)
T ss_pred ----------------HHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHH
Confidence 0012358889999999999999999999999999988 999999999999999999988
Q ss_pred hhheec--------ccccchhhhHHHHHHHHHHH
Q 008632 212 VVIYIQ--------DNLNWALGFGIPCAFMVAAL 237 (558)
Q Consensus 212 ~~~~l~--------~~~g~~~~f~~~~~~~~~~~ 237 (558)
+...+. +..+||+.|.+.+++.+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 151 TVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 766543 35689999987776555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=174.57 Aligned_cols=389 Identities=14% Similarity=0.103 Sum_probs=250.4
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
++|+++ +....+...+..+.+.+.+..++++++|+|..|.+++.+...+.+.+..++-|.+.||+ |.|++...++++.
T Consensus 12 ~~~~L~-~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~ 89 (417)
T COG2223 12 ARRNLW-LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLL 89 (417)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHH
Confidence 344444 44555666777888889999999999999999999999999999999999999999999 9999999999998
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.+-.+...++.+. .+.+++++.+++.|++.| ..++....+++.+|+|+ +|.+
T Consensus 90 ~IP~~~~~~a~~~---------------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~------qG~A 141 (417)
T COG2223 90 LIPCLGLAFAVTY---------------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK------QGLA 141 (417)
T ss_pred HHHHHHHHHHccC---------------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh------hhHH
Confidence 8888888887652 224789999999999844 45788899999999998 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheeccccc---chhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHh
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLN---WALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIK 271 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (558)
.+++. ..|+|..+...+++.+....+ |+....+..+.+++..+.+++..++.++.+++. ++... ..+...
T Consensus 142 lGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~--~~~~~--~~~~~v-- 214 (417)
T COG2223 142 LGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV--KPQLP--AQLKAV-- 214 (417)
T ss_pred HHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc--cccch--hHHHHH--
Confidence 99999 889999999999998888888 998888877777776666665544433322111 11110 000000
Q ss_pred hccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-ceeeeecc
Q 008632 272 TRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYT-TFFTKQGA 350 (558)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 350 (558)
..+++.+. +..+...+...+.-+..+. .++..+
T Consensus 215 -------------------------------------------~~~~~~W~-lsllY~~tFG~Fvgfs~~l~~~~~~~-- 248 (417)
T COG2223 215 -------------------------------------------FSNKDTWL-LSLLYFATFGGFVGFSAYLPMYLVTQ-- 248 (417)
T ss_pred -------------------------------------------hcCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 00122222 2222222222222222222 222221
Q ss_pred ccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 351 TMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLET 430 (558)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 430 (558)
++ -....++.......+...+.-|+.+++.||+++ .+.....+..++++..........
T Consensus 249 -----fg-~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg-----------~rv~~~~f~~~~~~~~~l~~~~~~---- 307 (417)
T COG2223 249 -----FG-LSPVTAGLIAFLFPLIGALARPLGGWLSDRIGG-----------RRVTLAVFVGMALAAALLSLFLTG---- 307 (417)
T ss_pred -----cC-CChhhHHHHHHHHHHHHHHHHhccchhhhhccc-----------hhHHHHHHHHHHHHHHHHHccccc----
Confidence 11 111223334444444444445555555444444 445666666666665555543110
Q ss_pred hhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 431 AKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 510 (558)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~ 510 (558)
. .+..+.+..+..++..++..+..+-..+..+..++|+ +-|.+.|+...+..+|++.-|...+...+.
T Consensus 308 ---~--------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~ 375 (417)
T COG2223 308 ---F--------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDL 375 (417)
T ss_pred ---c--------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHh
Confidence 0 0112333333333333444444444444455555655 578888998899999988888888888775
Q ss_pred ccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008632 511 TSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 554 (558)
Q Consensus 511 ~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~ 554 (558)
++ .....|+++..+.+++.+..+...+|.
T Consensus 376 tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 376 TG---------------SYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred cc---------------cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 53 234568888888888888888876654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-18 Score=182.85 Aligned_cols=387 Identities=14% Similarity=0.139 Sum_probs=232.6
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhh----cchhHH-HH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSF----LGRFRT-IV 108 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~-~~ 108 (558)
.++|+.+.+..+.+......+.....++.++++ .|.+..+.+.. +..... .++.++.|.++||+ +||||. ++
T Consensus 9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll 85 (491)
T PRK11010 9 FQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLL 85 (491)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHH
Confidence 345666667777777777777777888888774 59999999886 222222 36889999999995 288875 66
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhh
Q 008632 109 VASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQER 188 (558)
Q Consensus 109 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~ 188 (558)
.+.+...++...+++... ..+.+.+.+.+++.+++.+...+...++..|.+|+++
T Consensus 86 ~~~i~~~~~~~~~a~~~~---------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~---- 140 (491)
T PRK11010 86 ATQLLLLVAIAAMGFLEP---------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE---- 140 (491)
T ss_pred HHHHHHHHHHHHHHHcCC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh----
Confidence 777777777777766421 1347778888999999999999999999999999888
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhhhheecc-cccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhH-HHHHH
Q 008632 189 RAKSSFFNWWYFGISFGANSTILVVIYIQD-NLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFAR-IGRVF 266 (558)
Q Consensus 189 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 266 (558)
|+++.++...+.++|..+++.+.+++.+ ..|||..|++.+++.++..+..+.. ++..+.++++ +..++ ..+.+
T Consensus 141 --rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~--~~~~~~~~~~l 215 (491)
T PRK11010 141 --RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVP--KTLEQAVVAPL 215 (491)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccc--cchhhhHHHHH
Confidence 9999999999999999999999998888 5799999998877665554443332 2211110001 00000 00000
Q ss_pred HHHHhhccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceee
Q 008632 267 VVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFT 346 (558)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (558)
... .++++........+.............+.++.
T Consensus 216 ~~~---------------------------------------------~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~ 250 (491)
T PRK11010 216 RDF---------------------------------------------FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLI 250 (491)
T ss_pred HHH---------------------------------------------HcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00011111111111111121222222222221
Q ss_pred eeccccCccccccccc-Chhhhh-hhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 008632 347 KQGATMDRTITRSIKI-PAASLQ-LFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVE 424 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 424 (558)
. .. +++. ..+... ....+..++...+.+++.+++++|+ .+..+.++..+..+.+....
T Consensus 251 ~-------~~--G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-----------~l~i~~~l~~l~~l~~~~l~ 310 (491)
T PRK11010 251 R-------GV--GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR-----------ALMIFGILQGVSNAGYWLLS 310 (491)
T ss_pred H-------hc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 1 11 1111 112222 2333455566667777766665542 23334444333332222111
Q ss_pred HHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 425 IKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILV 504 (558)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~ 504 (558)
. ...+.+.+....++..+..+...+...++..+..|++.+++..|+.++...+|..+++.+.
T Consensus 311 ~------------------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~ 372 (491)
T PRK11010 311 I------------------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVA 372 (491)
T ss_pred h------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0022333333344434444444444557778899999999999999999999999988899
Q ss_pred HHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 008632 505 SIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 552 (558)
Q Consensus 505 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~ 552 (558)
|.+.|.. ++...|.+.+++++++++.++.+.+
T Consensus 373 G~l~~~~----------------G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 373 GWFVEAH----------------GWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHh----------------ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987632 2345677788888888777776643
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-18 Score=178.55 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHH
Q 008632 42 IIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMM 121 (558)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~ 121 (558)
+....+...+.+ ++...+.+.+++++|.+..+.+++.+.+.++..++.++.|++.||+ |||++++.+.++.+++.++.
T Consensus 8 ~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 8 ITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence 333333344333 4554555667899999999999999999999999999999999999 99999999999999998886
Q ss_pred HHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHH
Q 008632 122 TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFG 201 (558)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 201 (558)
..+.. ..+++.+++.|++.|+|.|...+...+++.+..|+++ |++..++.+..
T Consensus 86 ~~~~~---------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 138 (410)
T TIGR00885 86 WPAAE---------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSF 138 (410)
T ss_pred HHHHh---------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHH
Confidence 55432 0247889999999999999999999999999998877 88999999999
Q ss_pred HHHHHHhhhhhhheeccc--------------------------ccchhhhHHHHHHHHHHHHH
Q 008632 202 ISFGANSTILVVIYIQDN--------------------------LNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 202 ~~~g~~~~~~~~~~l~~~--------------------------~g~~~~f~~~~~~~~~~~~~ 239 (558)
.++|..++|.+++.+... .+||++|.+.+++.++..+.
T Consensus 139 ~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 139 NPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988866321 35999998777655444333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=180.29 Aligned_cols=328 Identities=11% Similarity=0.090 Sum_probs=204.0
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 008632 58 SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQN 137 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (558)
....+.+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+.+ ..++
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~~----------- 86 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAPG----------- 86 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhcc-----------
Confidence 3344457779999999999999999999999999999999999 99999999988887777666 4332
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheec
Q 008632 138 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ 217 (558)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 217 (558)
.+.+++.|++.|++.+...+..+..+.|.+| ++ |+++.++++.+.++|..+++.+++.+.
T Consensus 87 -------------~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 87 -------------TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred -------------HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999888888888888886 45 999999999999999999999988887
Q ss_pred ccc--cchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhh
Q 008632 218 DNL--NWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKA 295 (558)
Q Consensus 218 ~~~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (558)
+.. +||..|.+.++..++....+. ++.+++++++ ++..
T Consensus 147 ~~~~~~w~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~----------------------------------- 186 (355)
T TIGR00896 147 QHSGGHWQQALAWWALPALLALLAWI---PQVRRRVAAN--QTTT----------------------------------- 186 (355)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHh---hhhccccCCC--CCCC-----------------------------------
Confidence 654 399888766554433332222 1111111111 0000
Q ss_pred hhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHH
Q 008632 296 LLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGI 375 (558)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (558)
....+.. .++++.+.......+....+.....+.+.++.. .... ....+.......+..
T Consensus 187 --------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~~---~~~~g~~~~~~~~~~ 245 (355)
T TIGR00896 187 --------RLTPVRI----WRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS------HGAS---AATAGSLLALMQLAQ 245 (355)
T ss_pred --------CCCCchh----hcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCC---HHHHHHHHHHHHHHH
Confidence 0000000 011111111111111112222222222222211 1110 112233444455556
Q ss_pred HHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHH
Q 008632 376 ITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQY 455 (558)
Q Consensus 376 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (558)
++..++.+++.++..+| ++.+..+.++..++++....... ...+ . ..
T Consensus 246 i~~~~~~g~l~dr~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~-~--~~ 292 (355)
T TIGR00896 246 AASALLIPALARRVKDQ----------RGIVAVLAVLQLVGLCGLLFAPM--------------------HGLW-A--WA 292 (355)
T ss_pred HHHHHhHHHHHhhhccc----------hHHHHHHHHHHHHHHHHHHHhhh--------------------hHHH-H--HH
Confidence 66666666665544222 12355666666666655554311 1111 1 23
Q ss_pred HHHHHHHHHHhhhhhhhhh-ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008632 456 LLCGIADVFTIVGLQEFFY-DQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATS 512 (558)
Q Consensus 456 ~l~g~g~~~~~~~~~~~~~-~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~ 512 (558)
.+.+++.+...+...+.+. +..+++.++...++.+....++..++|.+.|.+.|..+
T Consensus 293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667787776666555554 34456788999999998889999999999999987553
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-16 Score=168.08 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhh----cchhH-HHHHHHHHHHHH
Q 008632 43 IGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSF----LGRFR-TIVVASLIYILG 117 (558)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~-~~~~~~~~~~i~ 117 (558)
..+.+.+...+.-....+|.|++++ |+|..+.|++...... .+..++.|+++||+ .|||| .++.+.++.+++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 3455566666666778899999965 9999999999666654 58889999999997 25665 778878888777
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH
Q 008632 118 LSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (558)
..++.+... ..+.+.+.+..++.+...+...++..+++.|.+|+++ |+++.++
T Consensus 82 ~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~ 134 (402)
T PRK11902 82 IAAMAFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAV 134 (402)
T ss_pred HHHHHhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHH
Confidence 777666521 1236667777777788888888999999999999888 9999999
Q ss_pred HHHHHHHHHHhhhhhhheeccc-ccchhhhHHHHHHHHHHHHH
Q 008632 198 WYFGISFGANSTILVVIYIQDN-LNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 198 ~~~~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~ 239 (558)
...+.++|..+++.+++.+.+. .|||..|++.++..++....
T Consensus 135 ~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 135 KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888775 59999999877765544443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=187.73 Aligned_cols=348 Identities=38% Similarity=0.618 Sum_probs=224.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCC
Q 008632 104 FRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQ 183 (558)
Q Consensus 104 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~ 183 (558)
.|+++.+.+++.+|.+++.++..+... +++.+.+.+++++.+.++|.|++.|+..++++|+++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~---------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~ 65 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL---------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED 65 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh---------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc
Confidence 378999999999999998887653221 12244678999999999999999999999999999977
Q ss_pred ChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEe-CCCCCCChhhH-
Q 008632 184 NPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFS-IKSKQRNPFAR- 261 (558)
Q Consensus 184 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 261 (558)
++ .+|.+++++++++.|+|+.+++.+.+++.++.||.+.|.++++.+++++++++..++++... ++.. ++..+
T Consensus 66 ~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~--~~~~~~ 140 (372)
T PF00854_consen 66 DD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGG--SPLTNF 140 (372)
T ss_dssp TT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-------S--S--
T ss_pred ch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCC--cccchh
Confidence 32 23999999999999999999999999999999999999999999999999999998888776 4444 55444
Q ss_pred HHHHHHHHHhhccccccchhhhhcccchhhHHhhhhc----CC-------------CCCCCCCCC-CchhhHHHHHHHHH
Q 008632 262 IGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLA----TP-------------DVSLEDGKL-CTLEDVEEAKALLR 323 (558)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------------~~~~~~~~~-~~~~~~~~~~~~~~ 323 (558)
...+.....+++....+. ...++...... .. ......+.. ...++.+..+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 212 (372)
T PF00854_consen 141 IKLVLVAAFKKRKLAVPK--------GSSWLDWALFQYSERSIFGIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIR 212 (372)
T ss_dssp SHHHHHHHHHHHCCCH-H--------HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHC
T ss_pred HHHHHHHHHHHhhccccc--------chHHHHHhhhhhhhhhhhhhhhhccchhhhhhhhhhcccCCccceeeeeeeeee
Confidence 333343444444332110 11111110000 00 000011111 22334445555666
Q ss_pred HHHHHHHHHHHHHHhhcccceeeeeccccCcccccc-cccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCCh
Q 008632 324 LIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRS-IKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITM 402 (558)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 402 (558)
.++.+.....+.....+...+...+....+...+ + +..|+.+++.++.+.++++.|+.+++..|+.|+. .+ .+.
T Consensus 213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~-~~---~~~ 287 (372)
T PF00854_consen 213 FLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRG-IQ---PSP 287 (372)
T ss_dssp HHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------
T ss_pred ccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhc-cc---chh
Confidence 6666666666777777766666666666666666 5 7899999999999999999999999999988832 22 567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhH
Q 008632 403 LQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELK 482 (558)
Q Consensus 403 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 482 (558)
...+..|++++.+++++.+..+..+.....+.+ ....++.+..+++..+++....+...+...|.+|++..
T Consensus 288 ~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p 358 (372)
T PF00854_consen 288 PQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAP 358 (372)
T ss_dssp HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-S
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhh
Confidence 778999999999999888777653333332333 13335666999999999998877666767777777777
Q ss_pred HHHHHHHHHHH
Q 008632 483 SFGLSIYMSVL 493 (558)
Q Consensus 483 g~~~g~~~~~~ 493 (558)
+..+|+++...
T Consensus 359 ~~m~~~~~~~~ 369 (372)
T PF00854_consen 359 SSMMGIWFALS 369 (372)
T ss_dssp SSSTHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 76666666544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=172.75 Aligned_cols=156 Identities=16% Similarity=0.161 Sum_probs=118.1
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhh----cchhHHH-HHHHHHHHHHHHHHHHHHHhhhcc
Q 008632 57 SSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSF----LGRFRTI-VVASLIYILGLSMMTLLALITLLS 131 (558)
Q Consensus 57 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 131 (558)
.....+.+.+++|+|.++.++.... .+...+ .++.|.++||+ +||||.+ +.+.++.++....+.+...
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----- 79 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----- 79 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence 3333344455789999999988655 344444 88999999996 3898974 5666666666656555421
Q ss_pred cccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhh
Q 008632 132 SSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTIL 211 (558)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 211 (558)
..+.+.+....++.+.+.+...++..+++.|.+|+++ |+++.++...+.++|..+++.
T Consensus 80 ----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~ 137 (356)
T TIGR00901 80 ----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGS 137 (356)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHH
Confidence 1235666666777788888888999999999999887 999999999999999999999
Q ss_pred hhheeccccc--------chhhhHHHHHHHHHHHHHHH
Q 008632 212 VVIYIQDNLN--------WALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 212 ~~~~l~~~~g--------~~~~f~~~~~~~~~~~~~~~ 241 (558)
+++.+.+..+ ||..|++.++..+++.+..+
T Consensus 138 l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 138 LALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9998888777 99999988877665554433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-16 Score=168.33 Aligned_cols=443 Identities=13% Similarity=0.036 Sum_probs=245.4
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhH----hhcchhHHHHHH-HHHH
Q 008632 40 SFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLAD----SFLGRFRTIVVA-SLIY 114 (558)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~~~~~~-~~~~ 114 (558)
..+..+.+...+++-...+.++.|+ +++|.+....+++.....+...+..|+.|+++| |+ ||||.++.+ .+..
T Consensus 7 i~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~~ 84 (477)
T TIGR01301 7 LRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHHH
Confidence 3344455556666666667777776 579999999999999999999999999999999 48 999998875 5566
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
+++..++.++.++..+.. + +.++. ......+...++..+..++.....+...++++|.+|+++++ ++.+
T Consensus 85 ~~~l~ll~~~~~~~~~~~---~--~~~~~--~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a 153 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFG---D--NLDKK--TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIA 153 (477)
T ss_pred HHHHHHHHhCchhhhhcc---c--ccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHH
Confidence 666666666543211100 0 00000 00011234444455556677777788899999999987622 4689
Q ss_pred hhHHHHHHHHHHHhhhhhhhee--cccc-------------cchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChh
Q 008632 195 FNWWYFGISFGANSTILVVIYI--QDNL-------------NWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPF 259 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l--~~~~-------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (558)
.++.+...++|..+|+.++++. .+.+ +.+..|++.+++.+++..+-....++.+..++++ .+.
T Consensus 154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~--~~~ 231 (477)
T TIGR01301 154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD--FIN 231 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc--chh
Confidence 9999999999999999988764 1111 4678888888776666555444333322111110 000
Q ss_pred hHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 260 ARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFA 339 (558)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (558)
.+ ..+ .++.+....+ ++....-.+-.|.+.+.+...++.-..|..+.
T Consensus 232 ~~----------~~~--------~~~~~~~~~~---------------~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~ 278 (477)
T TIGR01301 232 SE----------AAP--------PSKHGEEAFF---------------GELFGAFKYLPRPVWILLLVTCLNWIAWFPFI 278 (477)
T ss_pred hh----------ccc--------ccccchhhhH---------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 0000000000 00000001112334444444444444444444
Q ss_pred cccceeeeecccc-CcccccccccC---hhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHH
Q 008632 340 QYTTFFTKQGATM-DRTITRSIKIP---AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSI 415 (558)
Q Consensus 340 ~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~ 415 (558)
.+.+.++-+...- +..-...++.. ..+....+.+...+.. .+..++.||... ++..-..+.++.++
T Consensus 279 ~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s----~~l~~l~~~~g~------~k~~~~~s~~~~~~ 348 (477)
T TIGR01301 279 LFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITS----IGMEKLCRGWGA------GKRLWGIVNIILAI 348 (477)
T ss_pred HhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcc------chhHHHHHHHHHHH
Confidence 4444433221110 00000000000 0111122222222222 233333444321 12234677778888
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCC-CCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCCh--hhHHHHHHHHHHH
Q 008632 416 SMVVAALVEIKRLETAKEYGLIDKPN-VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK--ELKSFGLSIYMSV 492 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~--~~rg~~~g~~~~~ 492 (558)
+++...+......+....++ .+.. .++....+...+.+.+.|+.........++++++..|+ +.+|..+|+.|++
T Consensus 349 ~l~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~ 426 (477)
T TIGR01301 349 CLAATVLVTYVAKNSRYYDG--DGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLA 426 (477)
T ss_pred HHHHHHHHHhhhhccccccc--cccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHH
Confidence 87776655311000000000 0000 11111135566666788888888776667889999995 5569999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 493 LGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 493 ~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
--+.+.+.....|.+.+..++. ....+.+.+...++++++.++..++.+.
T Consensus 427 I~lpQii~sl~~g~~~~~~g~~--------------~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 427 IVIPQIIVSLGSGPWDQLFGGG--------------NLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC--------------CeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999998888865544321 1235666677778888888888887654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-16 Score=162.76 Aligned_cols=383 Identities=15% Similarity=0.127 Sum_probs=218.6
Q ss_pred HHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008632 47 VAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLAL 126 (558)
Q Consensus 47 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~ 126 (558)
++.-+.+-...++++.|+++ .|+|..|+|.+.+...+...+.+++.|.++||...+||.+.+..++.++...+....++
T Consensus 12 f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~ 90 (400)
T PF03825_consen 12 FLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS 90 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334444566889999985 67999999999999999999999999999999845677776666665555544444332
Q ss_pred hhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHH
Q 008632 127 ITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA 206 (558)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 206 (558)
++.+.+..++..+......|..-++.-+...+ ++.-++-.....++|.
T Consensus 91 ------------------------f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlwGSiGf 138 (400)
T PF03825_consen 91 ------------------------FWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLWGSIGF 138 (400)
T ss_pred ------------------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhhhhHHH
Confidence 56666666666776666666666666665553 3333455555556666
Q ss_pred Hhhhhh-hheeccccc---chhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhh
Q 008632 207 NSTILV-VIYIQDNLN---WALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDE 282 (558)
Q Consensus 207 ~~~~~~-~~~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (558)
.++.+. ++.+....+ ....+++.+...++... +.+..|+.+.++..++ +..+...+.....+|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~-~~l~lp~~~~~~~~~~-~~~~~~~~~~~~llk----------- 205 (400)
T PF03825_consen 139 IVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAG-FALFLPKTPPKRSAKE-SVKKLLGLDALKLLK----------- 205 (400)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH-HHHhCCCCccccccCC-CcccccchHHHHHhc-----------
Confidence 665433 222222222 23345554443322221 2222233221111110 100000000001111
Q ss_pred hhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccc-
Q 008632 283 AQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK- 361 (558)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 361 (558)
+++...-++..++........ ..+.+.+.++ .| ++.
T Consensus 206 ----------------------------------~~~~~~Fll~~~l~~~~~~~~-~~f~~~yl~~-------~g-g~~~ 242 (400)
T PF03825_consen 206 ----------------------------------NPRFLVFLLAAFLIGISHAAY-YTFFSIYLQE-------LG-GYSG 242 (400)
T ss_pred ----------------------------------CccHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-------cc-cchh
Confidence 111222222222222222222 2222222111 11 111
Q ss_pred cChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 008632 362 IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPN 441 (558)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (558)
...+...++..+..+.+..+.+++ .+| .+..+++.++.+...+-+.+++....
T Consensus 243 ~~~g~~~~l~~~aEi~~f~~~~~~----~~r-------~g~~~ll~~a~~~~~vR~~l~a~~~~---------------- 295 (400)
T PF03825_consen 243 STIGILWALGVVAEIPFFFFSGRF----LKR-------FGIKWLLLLALVAYAVRWLLYAYFSD---------------- 295 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHh-------cCHHHHHHHHHHHHHHHHHHHHHhcC----------------
Confidence 112233445555555555454444 555 34667788899999999888887520
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCcc
Q 008632 442 VTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMS-VLGVGGFLSSILVSIINEATSRDGGDSWF 520 (558)
Q Consensus 442 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~~g~~ig~~~~~~i~~~~~~~~~~~w~ 520 (558)
+....+........+.|+.++....+...|+.+.+|++.|++++|+++. ..++|..+|..+.|.+.|..+.+..-.
T Consensus 296 -~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~-- 372 (400)
T PF03825_consen 296 -PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFD-- 372 (400)
T ss_pred -CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhh--
Confidence 0001112223334578999999888888899999999999999999885 578999999999999988654322111
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 521 ADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 521 ~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
....+.+.+++.++..++++++.|+.+|
T Consensus 373 --------~~~~~~v~a~~~~~~~~~f~~~fk~~~~ 400 (400)
T PF03825_consen 373 --------WSAVFLVFAVMALVILVLFVILFKPKHN 400 (400)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 2345677788888888888888887654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-16 Score=169.14 Aligned_cols=383 Identities=14% Similarity=0.065 Sum_probs=225.0
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCC
Q 008632 66 GQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCS 145 (558)
Q Consensus 66 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (558)
+.++.+.....+..+.+.++..+++++.|.++||+ |||++++.+.++.+++.++.+++.+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~~------------------- 170 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAPN------------------- 170 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhCc-------------------
Confidence 56778888999999999999999999999999997 9999999999999999999999866
Q ss_pred CCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecccccchhh
Q 008632 146 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG 225 (558)
Q Consensus 146 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 225 (558)
++.+++.|++.|++.++...+...+++|.++++. |+.+.++ ......++.+++.+++++.. +||+.
T Consensus 171 -----~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~ 236 (521)
T KOG0255|consen 171 -----YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL 236 (521)
T ss_pred -----HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 8999999999999999999999999999999998 9999999 77777888888888888877 89999
Q ss_pred hHHHHHHHHHHHHHHHH--cCcceEEeCCCCCCChhhHHHHHHHHHHhh--ccccccchhhhhcccchhhHHhhhhcCCC
Q 008632 226 FGIPCAFMVAALVLFLL--GTKTYRFSIKSKQRNPFARIGRVFVVAIKT--RKATLASEDEAQSSQQFKFLNKALLATPD 301 (558)
Q Consensus 226 f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (558)
+++......+.++.++. ..+++...+.+ .++..+.+....+. ++.. .....+.............
T Consensus 237 ~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~-----~~~a~~~l~~~a~~n~~~~~------~~~~~~~~~~~~~~~~~~~ 305 (521)
T KOG0255|consen 237 FWIISIPSGLFLLLWFLPPESPRWLLSKGR-----IDEAIKILKKIAKLNGRKLS------VKELLRLELLLRPLKLLFT 305 (521)
T ss_pred HHHHHHHHHHHHHHHHccCcChHHHHHcCc-----hHHHHHHHHHHHhhcCCCCC------cHHHHHHHHHhhHhhhhcc
Confidence 98877665544443222 23333222221 12333333222111 1110 0000000000000000000
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHH-HHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHh
Q 008632 302 VSLEDGKLCTLEDVEEAKALLRLIPIW-ATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIP 380 (558)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (558)
.....+.+....+. .+++.......+ .....+....... ..+| ...................
T Consensus 306 ~~~~~~~~l~~~~~-l~~~~~~~~~~~~~~~~~y~gl~~~~------------~~lg----~~~~~~~~~~~~~~~p~~~ 368 (521)
T KOG0255|consen 306 EPKISFLDLFRTPR-LRYRTLYLLFIWFVFSLVYYGLSLNV------------SGLG----GNIYLNFTLSGLVELPAYF 368 (521)
T ss_pred CCCCchhhhhcCHH-HHHHHHHHHHHHHHHhHHHHhhhhhh------------hhcC----chHHHHHHHHHHHHhhHHH
Confidence 11122222222211 122222221111 1111111111000 0111 1111222222222222222
Q ss_pred hhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHH
Q 008632 381 IYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGI 460 (558)
Q Consensus 381 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 460 (558)
......++.+|| .....+.++..+++++.++.... ...++......+..+
T Consensus 369 ~~~~~~~~~gR~-----------~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 418 (521)
T KOG0255|consen 369 RNGLLLPEFGRR-----------PPLFLSLFLAGIGLLLFGWLPDD-------------------LGGWLHWILPLLGKF 418 (521)
T ss_pred HHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHhhcc-------------------chhHHHHHHHHHHHH
Confidence 223333333343 35778888888888888876421 110122222223333
Q ss_pred HHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHH
Q 008632 461 ADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALS 540 (558)
Q Consensus 461 g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~ 540 (558)
+..........+..|..|+..|+.+.+..+....+|++++|.+.-...... .. ..+.+++.++
T Consensus 419 ~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~---------------~~--~~~~~~~~~~ 481 (521)
T KOG0255|consen 419 FIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMF---------------PL--LGLILFGWLA 481 (521)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------------cc--chHHHHHHHH
Confidence 333333333567889999999999999999999999999998875553210 00 1122246666
Q ss_pred HHHHHHHHHhhcccccC
Q 008632 541 AGGLLAFLYFAKSYNRE 557 (558)
Q Consensus 541 ~i~~~~~~~~~~~~~~~ 557 (558)
.+...+..++.++++++
T Consensus 482 ~l~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 482 LLLGLLSLLLLPETKGK 498 (521)
T ss_pred HHHHHHHHhcCcccCCC
Confidence 66666776777776654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-17 Score=178.32 Aligned_cols=202 Identities=17% Similarity=0.239 Sum_probs=153.5
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
.+++.++.......+....+.++.......++++|+++.++.|++.+.+.++..++.++.|+++||+ ||||++.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence 4455554455544555555567777777788999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHHHhhh-c---------------ccccccCCCCCC--------CCCCC---chhHHHHHHHHHHHHHccc
Q 008632 114 YILGLSMMTLLALITL-L---------------SSSDCQNNNTAK--------SCSPH---HFQIIVFIFSLYLVAIGQG 166 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~l~gig~g 166 (558)
+++|.++.++++.... . ...-|.+++.+. .|... +..+..++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 9999999988763210 0 011143222211 22211 1135678899999999999
Q ss_pred ccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecccc----------------------cchh
Q 008632 167 GHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL----------------------NWAL 224 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------------g~~~ 224 (558)
...+...+++.|.+|+++ |+.++++++.+..+|..+|+++++++.+.+ +|+.
T Consensus 188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl 261 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI 261 (633)
T ss_pred cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence 999999999999999998 999999999999999999999999876432 2677
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 008632 225 GFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 225 ~f~~~~~~~~~~~~~~~~ 242 (558)
.|++.+++.++..+.++.
T Consensus 262 ~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 262 GFLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 787777665554444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-16 Score=168.19 Aligned_cols=356 Identities=12% Similarity=0.086 Sum_probs=201.8
Q ss_pred HHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHh----hcchh-HHHHHHHHHHHHHHHH
Q 008632 46 EVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADS----FLGRF-RTIVVASLIYILGLSM 120 (558)
Q Consensus 46 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr-~~~~~~~~~~~i~~~~ 120 (558)
.+..+..+..+..+++.|+++++|++....+++.....+...+..|+.|+++|| + ||| +.++.+.+..++..++
T Consensus 18 ~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~~l 96 (444)
T PRK09669 18 DTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVCLL 96 (444)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHHHH
Confidence 344555555667889999999999999999999999999999999999999998 6 774 5555676777676655
Q ss_pred HHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHH
Q 008632 121 MTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYF 200 (558)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 200 (558)
+...+. . +.....+.+++..++.+.+.........++.+|+.++.+ | |.+..++...
T Consensus 97 ~f~~p~---~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~--e---R~~l~~~r~~ 153 (444)
T PRK09669 97 TFYTPD---F---------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR--E---RHSLQSWRFA 153 (444)
T ss_pred HHhCCC---C---------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH--H---HHHHHHHHHH
Confidence 544321 0 011234555555566666666666777788999885432 1 8888888877
Q ss_pred HHHHHHHhhhhhhheecc-------cccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhc
Q 008632 201 GISFGANSTILVVIYIQD-------NLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTR 273 (558)
Q Consensus 201 ~~~~g~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (558)
..++|..+++.+...+.. ..+|+..+.+.+++.++.....+...++ +.+++++ ++ .+..+.+...+++
T Consensus 154 ~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e-~~~~~~~--~~-~~~~~~~~~~~~n- 228 (444)
T PRK09669 154 LSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKE-RYTPEVD--NS-SSVWKDLKLLLGN- 228 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEE-ecCCCCc--CC-CCHHHHHHHHhCC-
Confidence 778887777654433221 2357766666655544433322222111 1111111 10 1111111111111
Q ss_pred cccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccC
Q 008632 274 KATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMD 353 (558)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (558)
|.+...+...+..............++...... .
T Consensus 229 ---------------------------------------------~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~ 262 (444)
T PRK09669 229 ---------------------------------------------SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-R 262 (444)
T ss_pred ---------------------------------------------chHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-C
Confidence 111111111111111112222222222221110 0
Q ss_pred cccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008632 354 RTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKE 433 (558)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 433 (558)
. ...........+..++..++..++.++++||. ....+.++..+..+......
T Consensus 263 ~-------~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-----------~~~~~~~~~~~~~~~~~~~~--------- 315 (444)
T PRK09669 263 P-------DLATLFLVTGMIAGLFGALLSERLLGKFDRVR-----------AFKWTIVAFVILSALIFFIP--------- 315 (444)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----------HHHHHHHHHHHHHHHHHHhC---------
Confidence 0 01112222333444455566666655544442 34445544433322222211
Q ss_pred hccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 434 YGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVSI 506 (558)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~ig~~~~~~ 506 (558)
+.+.+.+.+..++.+++.+...+..++++.+..+ ++..|...|+.++...+|..+|+.+.+.
T Consensus 316 -----------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 316 -----------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1344455666677888888887777788887775 3456778899999999999999999999
Q ss_pred HhhhccCC
Q 008632 507 INEATSRD 514 (558)
Q Consensus 507 i~~~~~~~ 514 (558)
+.+..+..
T Consensus 385 ll~~~Gy~ 392 (444)
T PRK09669 385 ILAWVDYV 392 (444)
T ss_pred HHHHcCCC
Confidence 98876653
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-17 Score=164.55 Aligned_cols=414 Identities=13% Similarity=0.063 Sum_probs=225.8
Q ss_pred HHHHHHhhhhHHHHHHHhccc-------cCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHH
Q 008632 47 VAERFAYYGISSNLITYLTGQ-------LGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLS 119 (558)
Q Consensus 47 ~~~~~~~~~~~~~l~~yl~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~ 119 (558)
+.+.+..+.+....+.+-... -++++...+++..+..++..+++++.|+++||+ |||+++...+++++++++
T Consensus 51 ftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~ 129 (538)
T KOG0252|consen 51 FTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSA 129 (538)
T ss_pred cccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHH
Confidence 445555555544444432211 236778889999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHhhhcccccccCCCCCCCCC-CCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHH
Q 008632 120 MMTLLALITLLSSSDCQNNNTAKSCS-PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWW 198 (558)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 198 (558)
.++++.. + +-......++..|+++|+|.|+-+|.+.+..+|....+. ||...+..
T Consensus 130 ~~~~s~~------------------~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaav 185 (538)
T KOG0252|consen 130 LSGLSVG------------------TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAV 185 (538)
T ss_pred HhccCCC------------------CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEE
Confidence 7766532 1 222346788999999999999999999999999998887 88877764
Q ss_pred HH----HHHHHHHhhhhhhheeccc---------c--cchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChh--hH
Q 008632 199 YF----GISFGANSTILVVIYIQDN---------L--NWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPF--AR 261 (558)
Q Consensus 199 ~~----~~~~g~~~~~~~~~~l~~~---------~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 261 (558)
.. +.-.|++++.++...+... . =||..|.+.++..++ ++.+..+ .+++++- ..+ ++
T Consensus 186 Fa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~---~ly~Rl~--M~Et~~Y--~al~~~~ 258 (538)
T KOG0252|consen 186 FAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL---VLYFRLK--MPETARY--TALVSKK 258 (538)
T ss_pred EEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH---HHHhhhc--CCcchhH--HHHhhcC
Confidence 44 4444555555554433221 1 189888877744332 3322111 1222211 100 00
Q ss_pred HHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCC--CCCCCCCCCCchhhHH-HHHHHHHHHHHHHHHHHHHHHh
Q 008632 262 IGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP--DVSLEDGKLCTLEDVE-EAKALLRLIPIWATCLVYAIVF 338 (558)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 338 (558)
..+.. .-.+++.. ..+++.+.... ..+......+.....+ .-++++... ..|..+
T Consensus 259 ~~~a~--~d~~k~~~-------------~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~-------~~WFll 316 (538)
T KOG0252|consen 259 LKQAA--GDMKKVLS-------------VDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTA-------GTWFLL 316 (538)
T ss_pred Hhhhh--hccccccc-------------cccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHH-------HHHHhh
Confidence 00000 00011110 01111111111 1122222223221110 112222221 112221
Q ss_pred hccc-ceeeeeccccCcccccccccChhh----hhhhhHHHHHHHHhh-----hhhhhhhhccccccCCCCCChhhHHHH
Q 008632 339 AQYT-TFFTKQGATMDRTITRSIKIPAAS----LQLFIGIGIITFIPI-----YDCIFVPITRYFTQNPSGITMLQRIGA 408 (558)
Q Consensus 339 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~r~~~~~~~~~~~~~~~~ 408 (558)
.... +.-..|.. .-..++ -....+.. ..+.....+...+.+ .-.+++.+ ++.++.+.
T Consensus 317 Diafy~~nL~~s~-I~~~ig-~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-----------GRk~iq~~ 383 (538)
T KOG0252|consen 317 DIAFYGQNLFQSV-IFSAIG-VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-----------GRKYIQLM 383 (538)
T ss_pred hhhhhccccHHHH-HHHhhc-cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-----------hhHHHHHh
Confidence 1111 11111111 011111 00001111 111111222222222 22233333 44457888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHH-hhhhhhhhhccCChhhHHHHHH
Q 008632 409 GMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFT-IVGLQEFFYDQIPKELKSFGLS 487 (558)
Q Consensus 409 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~-~~~~~~~~~~~~P~~~rg~~~g 487 (558)
|++++++.+++.+..- |+ ..+..-.++.|.+..+..-+. ..+...+.+|.+|.+.||+.-|
T Consensus 384 GF~~~~i~~~~~~~~y-------------~~-----~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hG 445 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPY-------------NQ-----LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHG 445 (538)
T ss_pred hHHHHHHHHHHHcCCc-------------cc-----ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhh
Confidence 9999988888776531 10 112222333333333333332 3444456779999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 008632 488 IYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNRE 557 (558)
Q Consensus 488 ~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~ 557 (558)
++-.+.-.|.+++........+... ....+..+.+++++++++++.++.+++. ++++|
T Consensus 446 IsAA~GK~GAivg~~~F~~~t~~~y-----------p~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~ 503 (538)
T KOG0252|consen 446 ISAASGKAGAIVGAFGFLYLTDHNY-----------PPNIGVRNVFIILAGCMLLGILFTLLIP-ETKGK 503 (538)
T ss_pred HHHHhccchHHHHHHHhhHhhhccC-----------CccccchHHHHHHHHHHHHhHheeEEee-ccccc
Confidence 9999999999999998888875320 1123446789999999999988887765 77655
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-15 Score=158.56 Aligned_cols=360 Identities=11% Similarity=0.097 Sum_probs=194.3
Q ss_pred HHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhh---cchhHHH-HHHHHHHHHHHHH
Q 008632 45 VEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSF---LGRFRTI-VVASLIYILGLSM 120 (558)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~-~~~~~~~~i~~~~ 120 (558)
..+..+..+....++++.|+++.+|++..++|++.....+...+..++.|+++||. +||||.. +.+.+...+...+
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 34455666666667888899999999999999999999999999999999999984 2666644 5555545444444
Q ss_pred HHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHH
Q 008632 121 MTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYF 200 (558)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 200 (558)
+...+. .+ +.....+..++..++.+++.+...+...++..|+.++.+ | |.+..++-.+
T Consensus 96 ~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r~~~~~~r~~ 153 (448)
T PRK09848 96 VFWVPT--DW---------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---RARLGAARGI 153 (448)
T ss_pred HHhCcC--CC---------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---HHHHHHHHHH
Confidence 322110 00 001123334455566788888888777787777776532 2 6666555443
Q ss_pred H-----HHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccc
Q 008632 201 G-----ISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKA 275 (558)
Q Consensus 201 ~-----~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (558)
+ .+++..++|++.+.........+..+. .++.+++.+..+......++.++++++++ ...+.....++
T Consensus 154 ~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~~~l~~---- 226 (448)
T PRK09848 154 AASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQP--SLKISLQTLKR---- 226 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCC--CHHHHHHHHhC----
Confidence 3 345666677666543221111111111 11112222222111111122111110010 11111111111
Q ss_pred cccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHH-HHHHHHHHHHHHhhcccceeeeeccccCc
Q 008632 276 TLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLI-PIWATCLVYAIVFAQYTTFFTKQGATMDR 354 (558)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (558)
.|.+.... ..++....+. .+.....++.....+...
T Consensus 227 ------------------------------------------n~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ 263 (448)
T PRK09848 227 ------------------------------------------NRPLFMLCIGALCVLISTF-AVSASSLFYVRYVLNDTG 263 (448)
T ss_pred ------------------------------------------CchHHHHHHHHHHHHHHHH-HHhhhheeeEeeecCChH
Confidence 11111111 1111111111 222222222221111100
Q ss_pred ccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008632 355 TITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEY 434 (558)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 434 (558)
...........+..++..++..++.+++.+ ++.+..|.++..++++......
T Consensus 264 -------~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~-----------~~~~~~g~~~~~i~~~~~~~~~---------- 315 (448)
T PRK09848 264 -------LFTVLVLVQNLVGTVASAPLVPGMVARIGK-----------KNTFLIGALLGTCGYLLFFWVS---------- 315 (448)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHHHHHHcC----------
Confidence 011111112233445556666665444433 3457778777777766554321
Q ss_pred ccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 435 GLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE-------LKSFGLSIYMSVLGVGGFLSSILVSII 507 (558)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~-------~rg~~~g~~~~~~~~g~~ig~~~~~~i 507 (558)
..+.+...+..++.++|.+...+...+..++..|.+ .+|.++|++++.+.+|..+++.+.+.+
T Consensus 316 ----------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 316 ----------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134455566677888999888777778888888764 469999999999999999999999999
Q ss_pred hhhccCC
Q 008632 508 NEATSRD 514 (558)
Q Consensus 508 ~~~~~~~ 514 (558)
.+..+.+
T Consensus 386 l~~~G~~ 392 (448)
T PRK09848 386 LGLSGYI 392 (448)
T ss_pred HHHcCCC
Confidence 8766543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-15 Score=162.50 Aligned_cols=362 Identities=11% Similarity=0.090 Sum_probs=207.4
Q ss_pred HHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhH----hhcch-hHHHHHHHHHHHHHHH
Q 008632 45 VEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLAD----SFLGR-FRTIVVASLIYILGLS 119 (558)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr-r~~~~~~~~~~~i~~~ 119 (558)
..+..++.+..+..+++.|+++.+|++...+|.+....-+...+..|+.|+++| |+ || |+.++.+.+..+++..
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLF 92 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHH
Confidence 344556666667788999999999999999999999999999999999999999 77 88 6666777777777766
Q ss_pred HHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCC-CCChhhhhhhhhhhhHH
Q 008632 120 MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFD-AQNPQERRAKSSFFNWW 198 (558)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~ 198 (558)
++...+. . +++...+.+++..++..++.........++..|+.+ +++ |.+..++-
T Consensus 93 llf~~p~---~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~~~~ 148 (473)
T PRK10429 93 LLFSAHL---F---------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLVPYP 148 (473)
T ss_pred HHHcCCC---C---------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHHHHH
Confidence 6644221 0 111224445555566677777888888899999985 444 88888886
Q ss_pred HHHHHHHHHhhhhhhheecc-------cccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCC--CChhhHHHHHHHHH
Q 008632 199 YFGISFGANSTILVVIYIQD-------NLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQ--RNPFARIGRVFVVA 269 (558)
Q Consensus 199 ~~~~~~g~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 269 (558)
....++|+.+.+.+...+.. ..+|+....+.+++.+++....+...++.. ++++.+ +++..+..+.+...
T Consensus 149 ~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~ 227 (473)
T PRK10429 149 RFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY-SSDNQVSAEGSHLTLKDIVALI 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC-CccccccccccCCCHHHHHHHH
Confidence 66777776665544332211 224555554444443333333222122110 001000 00000001100000
Q ss_pred HhhccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeec
Q 008632 270 IKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQG 349 (558)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (558)
.+.|.+...+...+..............++....
T Consensus 228 ----------------------------------------------~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~ 261 (473)
T PRK10429 228 ----------------------------------------------YKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV 261 (473)
T ss_pred ----------------------------------------------hcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE
Confidence 0112222222222222222222223333333221
Q ss_pred cccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008632 350 ATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLE 429 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 429 (558)
.. +. .....+.....+..++..++..++.+++++|. .+..+..+..++.+........
T Consensus 262 ~~-~~-------~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-----------~~~~~~~~~~~~~~~~~~~~~~--- 319 (473)
T PRK10429 262 IG-DA-------DLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-----------LWAGASIFPVLSCGVLLLMGLA--- 319 (473)
T ss_pred CC-CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----------HHHHHHHHHHHHHHHHHHHhcc---
Confidence 11 00 11123334444566666777777755555543 3555555544444333221000
Q ss_pred hhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-------hhhHHHHHHHHHHHHHHHHHHHHH
Q 008632 430 TAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSI 502 (558)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~ig~~ 502 (558)
.+.+.+.+++..++.+++.+...+...++..|..+ ++..|...|..++...+|..+++.
T Consensus 320 --------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~ 385 (473)
T PRK10429 320 --------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAF 385 (473)
T ss_pred --------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 01234455556667788888777776777888866 455677899999999999999999
Q ss_pred HHHHHhhhccCC
Q 008632 503 LVSIINEATSRD 514 (558)
Q Consensus 503 ~~~~i~~~~~~~ 514 (558)
+.|.+.+..+.+
T Consensus 386 i~g~~l~~~Gy~ 397 (473)
T PRK10429 386 FIGVVLGLIGYV 397 (473)
T ss_pred HHHHHHHHcCCC
Confidence 999998876543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=157.37 Aligned_cols=343 Identities=13% Similarity=0.103 Sum_probs=201.0
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCC
Q 008632 67 QLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSP 146 (558)
Q Consensus 67 ~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (558)
.-+.+..-.|.+-+.+.+...+..+..|.++||+ |||++++.+.+..++...+.+.+.+
T Consensus 62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~~-------------------- 120 (451)
T KOG2615|consen 62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSRN-------------------- 120 (451)
T ss_pred cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 3345667789999999999999999999999999 9999999999999998888887755
Q ss_pred CchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecc---cccch
Q 008632 147 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD---NLNWA 223 (558)
Q Consensus 147 ~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~g~~ 223 (558)
+..+.++|++.|+..|-. .++-++++|.++++. |+.+++....+..+|.++||.++|++.. ..| +
T Consensus 121 ----F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~ 188 (451)
T KOG2615|consen 121 ----FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-S 188 (451)
T ss_pred ----HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-c
Confidence 767778899999998875 677899999999988 9999999999999999999999999987 223 2
Q ss_pred hhhHHHHHH-HHHH---HHHHHHcCcceEEeCCCC-CCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhc
Q 008632 224 LGFGIPCAF-MVAA---LVLFLLGTKTYRFSIKSK-QRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLA 298 (558)
Q Consensus 224 ~~f~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (558)
.+|.++... .+++ ...+.+..|+..+.+++. +.+++.+..+.. .+....++++.....
T Consensus 189 ~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~v~~l 251 (451)
T KOG2615|consen 189 YPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDR-----------------LALLKFARIFKVAAL 251 (451)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhh-----------------hhhcchhhhhhhhhh
Confidence 333332222 1111 222222233322211111 101121111100 001111111111111
Q ss_pred CCCCCCCCCCCCchhhHHHHHHH-HHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHH
Q 008632 299 TPDVSLEDGKLCTLEDVEEAKAL-LRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIIT 377 (558)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (558)
...+..++ ....+++ +..+.+ ...+..+......+.. ..+| --..+.+.+....++...+
T Consensus 252 ----rn~p~~~~----i~~~~i~~l~~~ly----~~l~s~~~~t~~~l~~------~rfg-~ss~~~G~vl~~tGl~m~~ 312 (451)
T KOG2615|consen 252 ----RNPPLLDF----ISVLRIFGLHYFLY----LELFSGLENTVLFLTH------GRFG-YSSMQQGKVLSTTGLLMLV 312 (451)
T ss_pred ----cCccccch----HHHHHHHHHHHHHH----HHHHHHHHhhHHHhhc------CccC-CChhhheeeeehhhHHHHH
Confidence 00001010 1111111 111111 1111111111111111 1111 0012222333333333333
Q ss_pred HHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHH
Q 008632 378 FIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLL 457 (558)
Q Consensus 378 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (558)
++.. ..|+.+|..+. .......+++++.-.+++.... .....+..+..+
T Consensus 313 ~ql~----~~~~l~~~~~~-----~~a~l~~~l~~~vP~~llls~~----------------------~~~~~l~~~s~l 361 (451)
T KOG2615|consen 313 IQLA----LVPILPRYKGN-----IKAVLLFSLLLIVPAFLLLSLA----------------------RTPVVLYLGSTL 361 (451)
T ss_pred HHHh----ccccccccccc-----hhhHHHHHHHHHHHHHHHHhcc----------------------ccchhhhHHHHH
Confidence 3322 23334443211 2334455566665555555543 223455666677
Q ss_pred HHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 458 CGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 509 (558)
Q Consensus 458 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~ 509 (558)
.++......+.+..++....|+++||...|+..+...++.++||.+.|.+.+
T Consensus 362 ~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 362 KSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 7777777777777888999999999999999999999999999999998865
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=159.58 Aligned_cols=147 Identities=15% Similarity=0.045 Sum_probs=134.8
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCC
Q 008632 66 GQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCS 145 (558)
Q Consensus 66 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (558)
++++.++++.|++.++..+.+.+..++.|.+.||+ |+|-.+++|++++...+++.++..+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~s------------------- 158 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGNS------------------- 158 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcch-------------------
Confidence 35677889999999999999999999999999998 9999999999999999999999866
Q ss_pred CCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecccccchhh
Q 008632 146 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG 225 (558)
Q Consensus 146 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 225 (558)
+++++++|.+||+|.+....+..++++|.+|+++. |++++|+.-.+.++|-.+||..+|.+.+..|.+.+
T Consensus 159 -----y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP 228 (464)
T KOG3764|consen 159 -----YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP 228 (464)
T ss_pred -----hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence 88899999999999999999999999999998752 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008632 226 FGIPCAFMVAALVLFLL 242 (558)
Q Consensus 226 f~~~~~~~~~~~~~~~~ 242 (558)
|.+.++++++....-++
T Consensus 229 FlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 229 FLVLAIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99888887766555444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-21 Score=208.42 Aligned_cols=389 Identities=12% Similarity=0.107 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHH
Q 008632 73 ATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQII 152 (558)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (558)
...++..+...++..++.+++|+++||+ |||++++.+.++..++.++..+++.. .+.+
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~ 103 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY---------------------NNFW 103 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc---------------------cccc
Confidence 4578889999999999999999999999 99999999999999999999998620 1388
Q ss_pred HHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecccc---cchhhhHHH
Q 008632 153 VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL---NWALGFGIP 229 (558)
Q Consensus 153 ~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~ 229 (558)
.+.++|+++|++.|+..+..+.++.|..|++. |++..++.+....+|..++..++-.+.+.. +||..+.+.
T Consensus 104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 177 (451)
T PF00083_consen 104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG 177 (451)
T ss_pred cccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999998 999999999999999988887765554433 499988877
Q ss_pred HHHHHHHH--HHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCC-CCCCCC
Q 008632 230 CAFMVAAL--VLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP-DVSLED 306 (558)
Q Consensus 230 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 306 (558)
.+..++.. ..+..+.|++...+.+.+ +..+.+.. .++.+. .+.+..+...+... ......
T Consensus 178 ~~~~l~~~~~~~~~pESP~wL~~~~~~~-----~A~~~l~~-~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 240 (451)
T PF00083_consen 178 AIPSLLVLLLRFFLPESPRWLLSKGRDE-----EAEKVLRK-LRGKEI-----------EDEEIEEIKAEKKESQESKAS 240 (451)
T ss_pred ccccccccccccccccccceeccccccc-----cccccccc-cccccc-----------cccccccccccccccccccee
Confidence 76543332 233445566554333221 11111111 010000 00000000000000 001123
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhh
Q 008632 307 GKLCTLEDVEEAKALLRLIPIWATCLVYA-IVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCI 385 (558)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (558)
+++....+. .+++....+.+...+.... .....+...+. ...+ .... ...+....+..++...+...+
T Consensus 241 ~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~-------~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~ 309 (451)
T PF00083_consen 241 WRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIF-------ENAG--ISNS-FLATLILGLVNFLGTLLAIFL 309 (451)
T ss_pred eeecccccc-ccccccccccccccccccccccccccccccc-------cccc--cccc-ccccccccccccccccccccc
Confidence 444432211 1233322222211111100 11111111111 1111 0011 011111112222222233344
Q ss_pred hhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHH-
Q 008632 386 FVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAAL-VEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADV- 463 (558)
Q Consensus 386 ~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~- 463 (558)
.++++||. ....+.++++++.+..+. .... ..+ .+......++ ...+......
T Consensus 310 ~~~~GRr~-----------~~i~~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~i~-~~~l~~~~~~~ 364 (451)
T PF00083_consen 310 IDRFGRRK-----------LLIIGLLLMAICSLILGIIFFLG------VSS-------SSWWSILSIV-FLALFFAFFSL 364 (451)
T ss_pred cccccccc-----------ccccccccccccccccccccccc------ccc-------ccccccccce-eeeeccccccc
Confidence 44555553 355666666666655541 1000 000 0001222222 2222222222
Q ss_pred HHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHH
Q 008632 464 FTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGG 543 (558)
Q Consensus 464 ~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~ 543 (558)
...+..+.+..|.+|++.|+.+.|+.....++++++++.+.+.+.+..+ ....+++.+++++++
T Consensus 365 g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~----------------~~~~~~i~~~~~~i~ 428 (451)
T PF00083_consen 365 GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG----------------GWGVFLIFAGVCLIA 428 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc----------------ccccchhhHHHHHHH
Confidence 2234444678999999999999999999999999998888777754211 123577888888999
Q ss_pred HHHHHHhhcccccCC
Q 008632 544 LLAFLYFAKSYNREN 558 (558)
Q Consensus 544 ~~~~~~~~~~~~~~~ 558 (558)
.++.+++.+|+++++
T Consensus 429 ~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 429 IIFVYFFLPETKGKT 443 (451)
T ss_pred HhheeEEEeeCCCCC
Confidence 999999999999874
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-15 Score=154.00 Aligned_cols=176 Identities=14% Similarity=0.028 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHH--HHHHHHHHHHHHHHH-HHHhHhhcchhHHHHHHHHH-H
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAA--VNVWSGTASLLPLLG-AFLADSFLGRFRTIVVASLI-Y 114 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Grr~~~~~~~~~-~ 114 (558)
...+..+.+.+...+....+.+|.|++ +.|.|..+.|+. .+.+.....+..++. ++.+||+ ||||..+....+ .
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 344556667777777777788888887 459999999997 355666666666666 6689998 999987555432 2
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.+.......... .......+.....+.++..+...+..-++..|..++++ ++.+
T Consensus 81 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~ 134 (390)
T TIGR02718 81 SACLASLALVGP--------------------DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKG 134 (390)
T ss_pred HHHHHHHHcCCc--------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHH
Confidence 211222221100 00112223333344445555555555555566666555 6777
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
.+....+..+|..+|+...+++.++.|||..|++.+++.++..+..+.
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778999999988889999999999999888776655444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=157.47 Aligned_cols=394 Identities=13% Similarity=0.060 Sum_probs=222.1
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH--H
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI--Y 114 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~--~ 114 (558)
+..+......++--+++-...++.+.+++++.|+|..++|.+.+...+...+.+|+.|.++||+ |.||-++....+ .
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 3455455555555555556779999999998999999999999999999999999999999998 866655433322 2
Q ss_pred HHHHHHHH-HHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 115 ILGLSMMT-LLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 115 ~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
..+-.... +.+. + ..-++++.++.++..+......... .|..-++. .+..+.
T Consensus 86 l~~pff~~v~~pl---l--------------------~~n~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~---sr~~~f 138 (412)
T PF01306_consen 86 LFGPFFIYVFGPL---L--------------------QSNFWLGAIIGGIYLGLVFNAGVPL-SEAYAERV---SRRNGF 138 (412)
T ss_dssp TCHHHHHHTHHHH---H--------------------HTT-HHHHHHTTTTTTTTTTTHHHH-HHHHHHHH---HHHHSS
T ss_pred HHHHHHHHHHHHH---H--------------------HHHHHHHHHHHHHHHHHHHcccchH-HHHHHHHH---HHHhcC
Confidence 22222221 2111 0 0112333333334333322222221 23322110 111333
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhc
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTR 273 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (558)
=+|-..+..++|.+++..++|.+.+ .+-+..|++.....++..++.+..++...++.+..+... .
T Consensus 139 eYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~-~------------- 203 (412)
T PF01306_consen 139 EYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG-A------------- 203 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS-S-------------
T ss_pred CcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc-c-------------
Confidence 3555677889999999999998876 456778887666544444443333322111111110000 0
Q ss_pred cccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHH-HHHHHHhhcccceeeeecccc
Q 008632 274 KATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATC-LVYAIVFAQYTTFFTKQGATM 352 (558)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 352 (558)
+.++.+.-+.. + ..+.|+...+..+.... ..+...-+|.+.++...- .
T Consensus 204 -----------~~~~~~~~~~~-----------------~-l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f--~ 252 (412)
T PF01306_consen 204 -----------KKDKVSLKDVL-----------------S-LFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF--Q 252 (412)
T ss_dssp -----------------HHHHH-----------------H-HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--S
T ss_pred -----------CCCCCcHHHHH-----------------H-HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 00000000000 0 00112222233333333 333344344433332210 0
Q ss_pred CcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008632 353 DRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAK 432 (558)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 432 (558)
+...+ +...+.+.++..+.......+..++.+|+ +.++.+.++..++++-.+..+..
T Consensus 253 ~~~~g---~~~~G~l~s~~v~~E~~~m~~~p~li~ri-----------g~k~~Lllag~i~~iRi~~~~~~--------- 309 (412)
T PF01306_consen 253 SAGQG---NQMYGYLWSVQVFLEALMMFFSPWLINRI-----------GAKNLLLLAGVIMAIRIIGSGFA--------- 309 (412)
T ss_dssp SHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHT----------
T ss_pred ccccC---hhHHhHHHHHHHHHHHHHHHHHHHHHHhc-----------ChHhHHHHHHHHHHHHHHHHhhh---------
Confidence 11111 01123444555555555555555554444 34456777777788887777765
Q ss_pred hhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhc
Q 008632 433 EYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIY-MSVLGVGGFLSSILVSIINEAT 511 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~~g~~ig~~~~~~i~~~~ 511 (558)
.+.+++.+.-.+.++-.........-|+.+.+|++..++...+. ++..++|..+.+.+.|.+.|..
T Consensus 310 -------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~ 376 (412)
T PF01306_consen 310 -------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI 376 (412)
T ss_dssp --------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc
Confidence 56677888888999988888888889999999999999999986 5899999999999999998742
Q ss_pred cCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 512 SRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 512 ~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
+++.+|++++++.++..++..+..++.++
T Consensus 377 ----------------G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 377 ----------------GFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred ----------------CcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 34567999999988888888887776554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-15 Score=147.44 Aligned_cols=416 Identities=13% Similarity=0.082 Sum_probs=230.7
Q ss_pred HhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008632 52 AYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLS 131 (558)
Q Consensus 52 ~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 131 (558)
......+.+..-+....|.+..+..++......+..++....|.++|++ |||+.+....+...+...+-..++
T Consensus 92 m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~sp------ 164 (528)
T KOG0253|consen 92 MEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASP------ 164 (528)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCC------
Confidence 3444556666667888999999999999999999999999999999999 999999888777776666666553
Q ss_pred cccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhh
Q 008632 132 SSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTIL 211 (558)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 211 (558)
++..+++.|.+.++|.|+ .|...+.-.|..|... |..-.=.. ....+|.+....
T Consensus 165 ------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~ 218 (528)
T KOG0253|consen 165 ------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEAL 218 (528)
T ss_pred ------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHH
Confidence 378899999999999999 8888888899999876 65544333 556788888887
Q ss_pred hhheecccccchhhhHHHHHH-HHHHHHHHH-HcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccc-hh--hhhcc
Q 008632 212 VVIYIQDNLNWALGFGIPCAF-MVAALVLFL-LGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLAS-ED--EAQSS 286 (558)
Q Consensus 212 ~~~~l~~~~g~~~~f~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~ 286 (558)
+.=....++|||+......+. ++.+...++ ...+|+..-+.+++ +.+....++.+. ++...+... +. +++.+
T Consensus 219 law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~-kAletL~kiArm--Ng~qlplgvl~~s~~~~~e 295 (528)
T KOG0253|consen 219 LAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDY-KALETLHKIARM--NGKQLPLGVLESSAIDRQE 295 (528)
T ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChH-HHHHHHHHHHHh--cCCCCCcceeeeehhhhhh
Confidence 777777778999876655544 333333332 23444433333331 223333332221 111111111 11 12223
Q ss_pred cchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHH-HHHHHHHHHHHHHHHHHh------hcccceee----eeccccCcc
Q 008632 287 QQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKA-LLRLIPIWATCLVYAIVF------AQYTTFFT----KQGATMDRT 355 (558)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~ 355 (558)
++...+++.+.....+.+.+-.....+ +-||+ ++.....+.....++... .|...-.. ......+..
T Consensus 296 ~e~~~~~~~~~~a~ke~rg~~~nLlsp--~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~ 373 (528)
T KOG0253|consen 296 QEESDLDDSKSSAAKEVRGGTTNLLSP--KLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETR 373 (528)
T ss_pred hhhhchhhhhhccccccccchHhhcCh--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhh
Confidence 333333333322221122222222222 22333 222222222111111111 11110000 000000000
Q ss_pred ccccccc--Chhhhhh-hhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008632 356 ITRSIKI--PAASLQL-FIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAK 432 (558)
Q Consensus 356 ~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 432 (558)
. +... ...+... ...+.-+-+..+...++++++||. .+...++++++..+....-.
T Consensus 374 ~--~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKk-----------TMal~l~~f~iflfll~~c~-------- 432 (528)
T KOG0253|consen 374 A--NCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKK-----------TMALSLILFGIFLFLLTTCK-------- 432 (528)
T ss_pred h--cCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchh-----------HHHHHHHHHHHHHHHHHHhc--------
Confidence 0 0000 0000000 011112222223445555656664 35556666655544332211
Q ss_pred hhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008632 433 EYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATS 512 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~ 512 (558)
+ ......+++.+-++...+ +-..+.|+.|..|+..|+++.|..+.+..+|+++.|+++ ...+.+
T Consensus 433 --~--------rn~~tvllf~arafisg~----fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s- 496 (528)
T KOG0253|consen 433 --T--------RNAYTVLLFTARAFISGA----FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELS- 496 (528)
T ss_pred --C--------cchhHHHHHHHHHHHhch----heEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccc-
Confidence 0 112233444444444333 334557888999999999999999999999999999988 443321
Q ss_pred CCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 008632 513 RDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNREN 558 (558)
Q Consensus 513 ~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~ 558 (558)
.....++.+++++++.+...++-.++++|.
T Consensus 497 ----------------~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 497 ----------------TSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred ----------------eeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 112357788888888888888888888773
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=160.84 Aligned_cols=358 Identities=13% Similarity=0.142 Sum_probs=224.0
Q ss_pred HHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhH----hhcchhHH-HHHHHHHHHHHHHHH
Q 008632 47 VAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLAD----SFLGRFRT-IVVASLIYILGLSMM 121 (558)
Q Consensus 47 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~~-~~~~~~~~~i~~~~~ 121 (558)
+..+..+.....+++.|+.+.+|+++...+++.....+..++..|+.|.++| |+ ||||- ++.+.+...++..++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence 4444455556678889999999999999999999999999999999999999 78 86655 456778888888777
Q ss_pred HHH-H-HhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHH
Q 008632 122 TLL-A-LITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWY 199 (558)
Q Consensus 122 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 199 (558)
... + .. +.......+.+..++..++......+..++..|+.+++++ |.+..++..
T Consensus 90 f~~~p~~~------------------~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~ 146 (428)
T PF13347_consen 90 FSPPPAGL------------------SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRM 146 (428)
T ss_pred hccccchh------------------hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHH
Confidence 754 2 10 0012234456666667888888889999999999986431 999999988
Q ss_pred HHHHHHHHhhhhhhheecccc-------cchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhh
Q 008632 200 FGISFGANSTILVVIYIQDNL-------NWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKT 272 (558)
Q Consensus 200 ~~~~~g~~~~~~~~~~l~~~~-------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (558)
....+|..+...+.+.+.+.. +|++...+.+++.++...+.....|+..++++++ ++..+..+.+
T Consensus 147 ~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~--~~~~~~~~~~------ 218 (428)
T PF13347_consen 147 IFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ--EKKISLRDSL------ 218 (428)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccc--ccccccccch------
Confidence 888888876666665554322 4776666666555544444333332211111111 1111111111
Q ss_pred ccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeecccc
Q 008632 273 RKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATM 352 (558)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (558)
+... ++ |.....+...+.....+........++.......
T Consensus 219 -----------------------------------~~~~----~n-r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~ 258 (428)
T PF13347_consen 219 -----------------------------------RSLF----RN-RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGN 258 (428)
T ss_pred -----------------------------------hhhc----cc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcC
Confidence 1111 01 1111122222212111121121111221111111
Q ss_pred CcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008632 353 DRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAK 432 (558)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 432 (558)
............+..++..|+..++.+++++|+ .+..+..+..++.++..+..
T Consensus 259 --------~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~-----------~~~~~~~~~~~~~~~~~~~~-------- 311 (428)
T PF13347_consen 259 --------EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKK-----------VYIIGLLLAALGFLLLFFLG-------- 311 (428)
T ss_pred --------chhhHHHHHHHHHHHHHHHHHHHHHHHHcccee-----------ehhhhHHHHHHHHHHHHHHH--------
Confidence 112233344556666777788877766665553 47778888877777766652
Q ss_pred hhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 433 EYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIP-------KELKSFGLSIYMSVLGVGGFLSSILVS 505 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~ig~~~~~ 505 (558)
..+.++..+...+.+++.+.......++..|..+ ++..|...|++++...++..+++.+.+
T Consensus 312 ------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 312 ------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred ------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 1466777788888899998877777777777776 355799999999999999999999999
Q ss_pred HHhhhccCCC
Q 008632 506 IINEATSRDG 515 (558)
Q Consensus 506 ~i~~~~~~~~ 515 (558)
.+.+..+..+
T Consensus 380 ~~l~~~Gy~~ 389 (428)
T PF13347_consen 380 LLLALVGYDA 389 (428)
T ss_pred HHHHHhCcCC
Confidence 9988765443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-14 Score=154.21 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=118.0
Q ss_pred hhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008632 54 YGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSS 133 (558)
Q Consensus 54 ~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 133 (558)
|++. .....+++++|+|..+.+++.+.... ..++.++.|+++||+ |||+++.++.++..+|.++++++.+...
T Consensus 44 y~fs-v~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~~i---- 116 (591)
T PTZ00207 44 YAFN-LISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQEVI---- 116 (591)
T ss_pred HHHH-HHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcccc----
Confidence 3443 33446788999999999998877443 345677789999999 9999999999999999999998632000
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHh-hhhh
Q 008632 134 DCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANS-TILV 212 (558)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~ 212 (558)
..+.+.+++.|++.|+|.+...+.....+.++|| ++ ||++.++...+.++|+++ +++.
T Consensus 117 --------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~ 175 (591)
T PTZ00207 117 --------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQ 175 (591)
T ss_pred --------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 0248889999999999999988888888999997 45 999999999999999875 6655
Q ss_pred hheecccccchhhhHHHHHHHHH
Q 008632 213 VIYIQDNLNWALGFGIPCAFMVA 235 (558)
Q Consensus 213 ~~~l~~~~g~~~~f~~~~~~~~~ 235 (558)
.+++.+ +|+..|++.+++.++
T Consensus 176 ~~l~~~--~~~~~fl~l~vl~~v 196 (591)
T PTZ00207 176 LAFFSD--NTSAYFFFLMSFALV 196 (591)
T ss_pred HHHHHH--hHHHHHHHHHHHHHH
Confidence 665543 577777666655443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-15 Score=160.55 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=119.7
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 008632 58 SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQN 137 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (558)
.....++.+++|-++ ...|+.+.+.+...+..++.|.|+|.+ |||..++.+.++..+|.++++.+++
T Consensus 64 a~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~~----------- 130 (599)
T PF06609_consen 64 ASILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQN----------- 130 (599)
T ss_pred HHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCCc-----------
Confidence 445567888898874 557788889999999999999999998 9999999999999999999998866
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheec
Q 008632 138 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ 217 (558)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 217 (558)
...++.+..+.|+|.|... .....++|..|.+. |+.+..+.....-.....++.++..+.
T Consensus 131 -------------~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 131 -------------MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred -------------HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 7789999999999977664 45666899999877 877776666554455556777776666
Q ss_pred ccccchhhhHHHHHHHHHHHHH
Q 008632 218 DNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 218 ~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
.+.+|||.|++..+...++++.
T Consensus 191 ~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 191 AHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred cCCCcchHHHHHHHHHHHHHHH
Confidence 6678999999888765554433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-15 Score=161.88 Aligned_cols=420 Identities=14% Similarity=0.104 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHhhhhHH---HHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHH
Q 008632 42 IIGVEVAERFAYYGISS---NLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGL 118 (558)
Q Consensus 42 ~~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~ 118 (558)
+.+..+..+...+++.. .+-..++++++.+..+.+|+.++......+..|+.+.+.||+ |.|.+.++|.++..+|.
T Consensus 47 V~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~ 125 (509)
T KOG2504|consen 47 VVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGL 125 (509)
T ss_pred eeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHH
Confidence 33333444444444332 334557789999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHH-HHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH
Q 008632 119 SMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFS-LYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (558)
++..++.+ .+++++. =++.|+|.|+.+.....++..+|+++ |+.+.++
T Consensus 126 ~lssF~~~------------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gi 174 (509)
T KOG2504|consen 126 LLSSFATS------------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGI 174 (509)
T ss_pred HHHHHHhh------------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhh
Confidence 99999976 6666655 45579999999999999999888753 9999999
Q ss_pred HHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccc
Q 008632 198 WYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATL 277 (558)
Q Consensus 198 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (558)
...+..+|..+=|.+.-++.+.+|||..+++.+.+.+-..+.-...+|...+.+++++ +......+......+......
T Consensus 175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 253 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE-KDLRNSAASVESTPKPVELRI 253 (509)
T ss_pred hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh-hhhcccccccccccccccccc
Confidence 9989999999999999999999999999988777766555555555553222211100 000000000000000000000
Q ss_pred cchhhhhcccc-----hhhHHhhhhcCCC-CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccc
Q 008632 278 ASEDEAQSSQQ-----FKFLNKALLATPD-VSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGAT 351 (558)
Q Consensus 278 ~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
. ........ ....++....... ........++.+..+++.-+...+...+....+...+...+.+. . ...
T Consensus 254 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~-~-~~g 329 (509)
T KOG2504|consen 254 S--ERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYA-K-SLG 329 (509)
T ss_pred c--cCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hcC
Confidence 0 00000000 0000000000000 00000001111222222222222222222222222111111111 1 011
Q ss_pred cCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 352 MDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA 431 (558)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 431 (558)
.+ ............+.-+++-++.+.+.|+.. +........+++..+++.++....
T Consensus 330 ~~-------~~~aa~l~Siigi~~i~gRi~~G~laD~~~---------~~~~~~~~~~ll~~gl~~~~~p~~-------- 385 (509)
T KOG2504|consen 330 LS-------SNDAAFLLSIIGVSDIIGRIILGLLADKPG---------IRALVLFLLTLLIAGLARLFLPFA-------- 385 (509)
T ss_pred CC-------hhhhHHHHHHHHHhhhhhhhhhhhhcCccc---------cchHHHHHHHHHHHHHHHHHHHHh--------
Confidence 11 112233333444444444555555433222 224455667777777776555543
Q ss_pred hhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008632 432 KEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEAT 511 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~ 511 (558)
.+++.++..-+++|+..+...........+..+.+.-..+.|+..+.+.++..+||.+.+.+.|.+
T Consensus 386 --------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t 451 (509)
T KOG2504|consen 386 --------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT 451 (509)
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence 455677777778888888766555567889999999999999999999999999999999887654
Q ss_pred cCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 008632 512 SRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFA 551 (558)
Q Consensus 512 ~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~ 551 (558)
++ |...|...+.+.+++.++.++..
T Consensus 452 g~---------------Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 452 GN---------------YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred CC---------------eeeehhhcChHHHHHHHHHHHhH
Confidence 31 23345555666666655555444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-14 Score=143.21 Aligned_cols=136 Identities=17% Similarity=0.121 Sum_probs=122.3
Q ss_pred hhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008632 55 GISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSD 134 (558)
Q Consensus 55 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 134 (558)
.....+.+.+++.++++..+++++...+..++.+..++.|++.+|+ |+|+.++.+..++++|..+.+=++.
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~-------- 100 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS-------- 100 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh--------
Confidence 4556677889999999999999999999999999999999999999 9999999999999999999875543
Q ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 008632 135 CQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI 214 (558)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 214 (558)
...+..++++.++.+.|.+.......++++.+.++++ -.+-+++.+....+|+.++|++++
T Consensus 101 -------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 101 -------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGS 161 (422)
T ss_pred -------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 1448899999999999999999999999999999876 566688888889999999999999
Q ss_pred eecc
Q 008632 215 YIQD 218 (558)
Q Consensus 215 ~l~~ 218 (558)
++..
T Consensus 162 ~lil 165 (422)
T COG0738 162 SLIL 165 (422)
T ss_pred HHHH
Confidence 8876
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-15 Score=152.60 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=134.1
Q ss_pred hHHHHHHHhccccCCChHH-HHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008632 56 ISSNLITYLTGQLGESTAT-AAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSD 134 (558)
Q Consensus 56 ~~~~l~~yl~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 134 (558)
..++...|+.+++|++..+ .+.+.+.+..++.++.+++|+++||+ |-|+++..+.+...+..++..++.+
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~S-------- 114 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGTS-------- 114 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 4466777899999999999 99999999999999999999999999 9999999999999999999999866
Q ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 008632 135 CQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI 214 (558)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 214 (558)
...+.+.|++.|++.|... +...++..++|+++ |+++.++.+.+.++|.++++++++
T Consensus 115 ----------------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 115 ----------------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999 99999999999887 999999999999999999999999
Q ss_pred eecccccchhhhH---HHHHHHHHHHHHHH
Q 008632 215 YIQDNLNWALGFG---IPCAFMVAALVLFL 241 (558)
Q Consensus 215 ~l~~~~g~~~~f~---~~~~~~~~~~~~~~ 241 (558)
. ...+||+.-+. +......+++++.+
T Consensus 172 l-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 172 L-LVTLGWISYSTLNIISLVFMTFSVFLAL 200 (511)
T ss_pred H-HHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 8 44679986553 44444444444433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-14 Score=151.38 Aligned_cols=381 Identities=14% Similarity=0.115 Sum_probs=215.9
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcc-----hhHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLG-----RFRTIVVASLI 113 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~~~~~~~~ 113 (558)
+..+..+.+.+... +.....++.++++++|++..+.+...+...+...+-++ .|.++||+ + ||+.++.+.++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence 34444567778777 77778888999999999999999998998888888766 89999998 8 77777777655
Q ss_pred HH-HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 114 YI-LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 114 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
.. +....+...+ .......+.+++.+++.+....+.-++..|..+ +++. .++
T Consensus 105 ~~~~~~~~l~~~~-----------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~ 157 (468)
T TIGR00788 105 GSAILYGLLPGKV-----------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGP 157 (468)
T ss_pred HHHHHHHhccccc-----------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCC
Confidence 52 2222222111 112333346788899999999999999999999 4421 134
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhh
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKT 272 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (558)
...++.+...++|..+|+.++|.+.+..+|+..|++.+++.++........+++.....++..++. . ....+.
T Consensus 158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~--~-----~~~~~~ 230 (468)
T TIGR00788 158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL--E-----MNMALL 230 (468)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccc--h-----hhhhhh
Confidence 445555556679999999999999998999999988877766554333332221000011100000 0 000000
Q ss_pred ccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeecccc
Q 008632 273 RKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATM 352 (558)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (558)
.....+..+.. .+.. .. ...++.+...+.+.+.. +...-....+.+....
T Consensus 231 ---------------~~~~~~~~~~~--------~~~l-~~-~l~~~~i~~~l~fifl~--~~~~~~~~~~~f~~~~--- 280 (468)
T TIGR00788 231 ---------------TLGVLANVKVQ--------ILGL-RG-AIQLLEIAKPLIFIFLS--YANLPGASGSVFCATT--- 280 (468)
T ss_pred ---------------hhhHHHHHHHH--------HHHH-HH-HHhcHHHHHHHHHHHHH--HhhcCCCCceeEEEEc---
Confidence 00000000000 0000 00 00112222221111110 1111111111211111
Q ss_pred CcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Q 008632 353 DRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVE-IKRLETA 431 (558)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~ 431 (558)
...| .-....+.......+..+++..+.+++ .+| .+.++.+.++.++..++.+...... ...
T Consensus 281 -~~lG-~s~~~~G~~~~~~~v~~i~g~~~~~~~----~~~-------~~~r~~l~~~~~l~~~~~~~~~~l~~~~~---- 343 (468)
T TIGR00788 281 -QCLP-GGPSFSGMSKVVGNLGSLCGVGGYDRF----LKT-------FPYRLLFGVTTLLYTLSSLFDLILVKRWN---- 343 (468)
T ss_pred -ccCC-CCcchhhhHHHHHHHHHHHHHHHHHHH----Hhh-------CCHHHHHHHHHHHHHHHHhCceeeeeccc----
Confidence 1121 011122333444445555555555554 333 3455667777777766654432110 000
Q ss_pred hhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008632 432 KEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEAT 511 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~ 511 (558)
...+ ....+++....++.+++.++...+...+.++..|++.+|+..|+.++..++|..+++.+++.+.+..
T Consensus 344 ~~~g---------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 344 LAFG---------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred cccC---------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0000 0112344445566777777776666789999999999999999999999999999999999998754
Q ss_pred c
Q 008632 512 S 512 (558)
Q Consensus 512 ~ 512 (558)
+
T Consensus 415 g 415 (468)
T TIGR00788 415 G 415 (468)
T ss_pred C
Confidence 3
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-13 Score=145.22 Aligned_cols=170 Identities=13% Similarity=0.144 Sum_probs=118.8
Q ss_pred HHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhh---cchhH-HHHHHHHHHHHHHHH
Q 008632 45 VEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSF---LGRFR-TIVVASLIYILGLSM 120 (558)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~~~i~~~~ 120 (558)
..+..+..+..+..++..|+.+.+|+++..+|++....-+.-++.-|+.|+++||. +|||| .++.+.+...++.++
T Consensus 17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l 96 (460)
T PRK11462 17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL 96 (460)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence 34445555556667899999999999999999999999999999999999999962 38765 555666777777766
Q ss_pred HHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHH
Q 008632 121 MTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYF 200 (558)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 200 (558)
+...+. . +.......+.+.-++..++.........++.+|+.++.+ | |.+..++...
T Consensus 97 lf~~p~---~---------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l~s~r~~ 153 (460)
T PRK11462 97 AYSTPD---L---------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISLQSWRFV 153 (460)
T ss_pred HHhCCC---C---------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHHHHHHHH
Confidence 654321 0 111223445555566677888888888899999997532 2 9999999998
Q ss_pred HHHHHHHhhhhhhheeccc-------ccchhhhHHHHHHHHHHH
Q 008632 201 GISFGANSTILVVIYIQDN-------LNWALGFGIPCAFMVAAL 237 (558)
Q Consensus 201 ~~~~g~~~~~~~~~~l~~~-------~g~~~~f~~~~~~~~~~~ 237 (558)
+.++|..+++.+...+... .+|+....+.+++.+++.
T Consensus 154 ~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 154 LATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 8888887776665443332 245555544444433333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-13 Score=133.00 Aligned_cols=357 Identities=15% Similarity=0.136 Sum_probs=232.4
Q ss_pred hHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008632 56 ISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDC 135 (558)
Q Consensus 56 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 135 (558)
-...+..-+++++|+|.+.+|++.+...++..+..+++.+++.|+ |-.|.+..++++.++|.++=... .
T Consensus 30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~-~--------- 98 (395)
T COG2807 30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG-G--------- 98 (395)
T ss_pred hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc-c---------
Confidence 345566678899999999999999999999999999999999998 99999999999999998876654 2
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhe
Q 008632 136 QNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIY 215 (558)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 215 (558)
...++.+-.+.|.|++......|+.+-+.||++ .+..+++|....++|+.+++.+...
T Consensus 99 ---------------~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavp 156 (395)
T COG2807 99 ---------------LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVP 156 (395)
T ss_pred ---------------HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhH
Confidence 567888999999999999999999999999975 6889999999999999999999888
Q ss_pred ecccc-cchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHh
Q 008632 216 IQDNL-NWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNK 294 (558)
Q Consensus 216 l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (558)
+.++. |||....+=+...++++++++.-..+.+....+. + ..+ +
T Consensus 157 la~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~--~-~~~----------~---------------------- 201 (395)
T COG2807 157 LAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIAT--K-LVS----------V---------------------- 201 (395)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccc--c-ccc----------c----------------------
Confidence 88777 6998887777777777777765432221111111 0 000 0
Q ss_pred hhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHH
Q 008632 295 ALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIG 374 (558)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (558)
..-|+ ++..+...+..-+....++..+.+++..+.++.. +. ...+.+-.+..+.
T Consensus 202 ---------~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~--sa-------~~aG~llsl~~l~ 255 (395)
T COG2807 202 ---------RKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL--SA-------AEAGSLLSLMQLA 255 (395)
T ss_pred ---------ccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC--CH-------HHhhhHHHHHHHH
Confidence 00011 1112222233334455566666777766654321 11 1223333333333
Q ss_pred HHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHH
Q 008632 375 IITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQ 454 (558)
Q Consensus 375 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (558)
.+....+...+ .+|..+. ++.......++.+++.-+.+... ...++|
T Consensus 256 ~~~~~ll~P~l----a~R~~n~------r~~~~~~~~~~l~G~~G~~~~P~-------------------~~~~lw---- 302 (395)
T COG2807 256 QLPTALLIPLL----ARRSKNQ------RPLVVLALLLMLVGLVGLLLAPG-------------------QLPILW---- 302 (395)
T ss_pred HHHHHHHHHHH----HHHhccc------chHHHHHHHHHHHHHHHHHHhhh-------------------hHHHHH----
Confidence 33333333333 3332222 22344444455555544444321 012222
Q ss_pred HHHHHHHHHHHhhhhhhhhh-ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHH
Q 008632 455 YLLCGIADVFTIVGLQEFFY-DQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFY 533 (558)
Q Consensus 455 ~~l~g~g~~~~~~~~~~~~~-~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~ 533 (558)
.++.|+|.+..++-...++. +...++.-+.-.|+.+...++-...||.+.|++.|.++ +| ....
T Consensus 303 ~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g-----sw----------~~~~ 367 (395)
T COG2807 303 ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG-----SW----------SAPL 367 (395)
T ss_pred HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC-----Ch----------HHHH
Confidence 36778887776544444444 45556666777788888888888889999999998764 34 2345
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 008632 534 WLLAALSAGGLLAFLYFAKSY 554 (558)
Q Consensus 534 ~~~a~~~~i~~~~~~~~~~~~ 554 (558)
..++.+.++..++-+...|+.
T Consensus 368 ~~l~~~~i~m~i~Gl~a~r~~ 388 (395)
T COG2807 368 VLLALATLLMLIFGLRAGRNR 388 (395)
T ss_pred HHHHHHHHHHHHHHhhcchhH
Confidence 566666666666666666654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=145.89 Aligned_cols=150 Identities=14% Similarity=0.126 Sum_probs=127.0
Q ss_pred hccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCC
Q 008632 64 LTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKS 143 (558)
Q Consensus 64 l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (558)
++++.++...+.+.+.+++.+++.++.+++|.|.||+ .-.+.+....+...+..++....++
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~s----------------- 133 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVHS----------------- 133 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhh-----------------
Confidence 5688899999999999999999999999999999999 8666666666666666655555544
Q ss_pred CCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhee------c
Q 008632 144 CSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI------Q 217 (558)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l------~ 217 (558)
.+.+++.|++.|+..+...|....+++.++.+++ |+.-+++++...++|.++|.++...+ .
T Consensus 134 -------~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~ 200 (495)
T KOG2533|consen 134 -------FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG 200 (495)
T ss_pred -------hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence 8889999999999999999999999999999988 99999999999999999999888775 3
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHcC
Q 008632 218 DNLNWALGFGIPCAFMVAALVLFLLGT 244 (558)
Q Consensus 218 ~~~g~~~~f~~~~~~~~~~~~~~~~~~ 244 (558)
...|||+.|++.+++.++..++.++..
T Consensus 201 ~~~gW~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 201 GLAGWRWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred CcCCceeehhHHHHHHHHHHheEEEEe
Confidence 346899999999987766555544433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-12 Score=132.26 Aligned_cols=364 Identities=14% Similarity=0.131 Sum_probs=223.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhh---cchh-HHHHHHHHHHHHHHH
Q 008632 44 GVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSF---LGRF-RTIVVASLIYILGLS 119 (558)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr-~~~~~~~~~~~i~~~ 119 (558)
...+..++.+-....++..|+++.+|+++..+|.+..+.-+.-++.-|+.|.+.||. +||| +.++.+.+..++...
T Consensus 19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~ 98 (467)
T COG2211 19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV 98 (467)
T ss_pred chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence 334555566666778899999999999999999999999999999999999999963 2664 566667788888888
Q ss_pred HHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHH
Q 008632 120 MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWY 199 (558)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 199 (558)
++..+++. +.+......++.-++.+++.........++.+|+.++.+ | |.+..++-.
T Consensus 99 l~F~~p~~------------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--E---R~~l~s~R~ 155 (467)
T COG2211 99 LLFITPDF------------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--E---RASLTSWRM 155 (467)
T ss_pred HHHcCCCc------------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH--H---HHHHHHHHH
Confidence 88876430 111335556666777889999999999999999997532 2 999999999
Q ss_pred HHHHHHHHhhhhhhheecc-------cccchhhhHHHHHHHHHHHHHHHHc-CcceEEeCCCCCCChhhHHHHHHHHHHh
Q 008632 200 FGISFGANSTILVVIYIQD-------NLNWALGFGIPCAFMVAALVLFLLG-TKTYRFSIKSKQRNPFARIGRVFVVAIK 271 (558)
Q Consensus 200 ~~~~~g~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (558)
.+.++|..+...+.+.+.. ..||+..-.+.+++.++..+..++. +.|..+..+.++ ....+..+.+....+
T Consensus 156 ~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~-~~~~~~~~~~~~~~~ 234 (467)
T COG2211 156 VFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT-GVKLKLKDSFLLIFK 234 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-cccccHHHHHHHHHc
Confidence 8889987766555544433 2345544444444433333332222 222211111110 011111222211212
Q ss_pred hccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccc
Q 008632 272 TRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGAT 351 (558)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
| |.+...+...+..............++.....
T Consensus 235 N----------------------------------------------rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~l- 267 (467)
T COG2211 235 N----------------------------------------------RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL- 267 (467)
T ss_pred c----------------------------------------------chHHHHHHHHHHHHHHHHHHhhhhheeEEEEc-
Confidence 2 11222222222222222222333333332211
Q ss_pred cCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 352 MDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA 431 (558)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 431 (558)
... ...+...........++..++..++..+++|| +...++.++..++.+..-+..
T Consensus 268 -g~~-----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----------~~~~~~~~~~~i~~~~~~f~~------- 323 (467)
T COG2211 268 -GDP-----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----------KLFLIGLLLLAVGYLLLYFTP------- 323 (467)
T ss_pred -CCh-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHhhc-------
Confidence 111 11122233333444444456666664444444 457778877777777666542
Q ss_pred hhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhcc-------CChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 432 KEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQ-------IPKELKSFGLSIYMSVLGVGGFLSSILV 504 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~-------~P~~~rg~~~g~~~~~~~~g~~ig~~~~ 504 (558)
..+.+++++...+.++|.+...+..++.+.+. .-.+..|...|.+++...+|.+++.++.
T Consensus 324 -------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 324 -------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred -------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 25667777777888888888777766666655 4456778899999999999999999999
Q ss_pred HHHhhhccCCC
Q 008632 505 SIINEATSRDG 515 (558)
Q Consensus 505 ~~i~~~~~~~~ 515 (558)
|++.+..+..+
T Consensus 391 g~~L~~~Gyv~ 401 (467)
T COG2211 391 GWILGAIGYVP 401 (467)
T ss_pred HHHHHHcCCCC
Confidence 99988665433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-11 Score=131.11 Aligned_cols=369 Identities=13% Similarity=0.108 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHH-HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHH
Q 008632 75 AAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVA-SLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIV 153 (558)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (558)
.+...++..+...+..|+.|.++|+- |+||.++.. .++..+..+++.+... .+++.
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~~----------------------~~~~~ 128 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVSP----------------------GQWWL 128 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhCc----------------------chHHH
Confidence 35667788888889999999999988 766665544 4555566666666422 22433
Q ss_pred HHHHHHHHHHcccccccccccccccCCCCCChh--------------------hhhhhhhhhhHHHHHHHHHHHhhhhhh
Q 008632 154 FIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ--------------------ERRAKSSFFNWWYFGISFGANSTILVV 213 (558)
Q Consensus 154 ~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~--------------------~~~~r~~~~~~~~~~~~~g~~~~~~~~ 213 (558)
..+..++.-++.+.......+++.|..++++.. +...|++..+.-.....+|+.+..++.
T Consensus 129 ~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~ 208 (477)
T PF11700_consen 129 ALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLIS 208 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHH
Confidence 333344445666666777888999999877620 000127777776666677777766554
Q ss_pred heecc--------cccchhhhHHHHHHH-HHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhh
Q 008632 214 IYIQD--------NLNWALGFGIPCAFM-VAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQ 284 (558)
Q Consensus 214 ~~l~~--------~~g~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (558)
-.+.. ..+.|..+.+.++.. +.++..+...+++...++.++..+....-.+.+...+|+.
T Consensus 209 l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~----------- 277 (477)
T PF11700_consen 209 LLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEI----------- 277 (477)
T ss_pred HHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH-----------
Confidence 43321 123467777666653 3344444444433221111111122222233332222221
Q ss_pred cccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCccccccccc-C
Q 008632 285 SSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKI-P 363 (558)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 363 (558)
++.|.+..++..+++..-.......+...+.. ..++ ++. .
T Consensus 278 -------------------------------~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~------~~lg--~s~~~ 318 (477)
T PF11700_consen 278 -------------------------------RKLRQLFLFLIAYFLYSDGVNTIISFAGIYAT------EVLG--MSTTQ 318 (477)
T ss_pred -------------------------------HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcC--cCHHH
Confidence 11122222222211111111111111111111 1111 111 1
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCC
Q 008632 364 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 443 (558)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (558)
...+..+..+..+++..+..++ .||...| .++.+...+++..+..+........ ...|
T Consensus 319 l~~~~l~~~i~a~~Ga~~~g~l----~~r~g~k-----~~~~l~~~l~~~~~i~~~g~~G~~~-----~~~g-------- 376 (477)
T PF11700_consen 319 LIVFGLVVQIVAIIGALLFGWL----QDRFGPK-----TKRTLLISLILWIIIPLYGLFGFWP-----SFFG-------- 376 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhCCc-----hhHHHHHHHHHHHHHHHHHHHHhhh-----cccC--------
Confidence 1112222233333444444444 3333211 1134444444443332222211000 0011
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccc
Q 008632 444 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 523 (558)
Q Consensus 444 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~ 523 (558)
..+.+.+.+.-++.|+..+...+...++..+..|+++++...|++.+.....+++||.+.+.+.+.++
T Consensus 377 -~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg----------- 444 (477)
T PF11700_consen 377 -LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG----------- 444 (477)
T ss_pred -cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------
Confidence 12333444445677888888877778999999999999999999999999999999999999988653
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008632 524 LNRAHLDYFYWLLAALSAGGLLAFLYFAKSY 554 (558)
Q Consensus 524 ~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~ 554 (558)
..++.+..+..+.++++++.+.+..+.
T Consensus 445 ----~~r~g~~~l~~lf~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 445 ----SQRYGFLFLLVLFLIGLILLFFVDVEK 471 (477)
T ss_pred ----CchhHHHHHHHHHHHHHHHHhhccchh
Confidence 233557777778888877776655444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.4e-14 Score=140.56 Aligned_cols=185 Identities=18% Similarity=0.150 Sum_probs=147.9
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhc-chhHHH-HHH
Q 008632 33 SGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFL-GRFRTI-VVA 110 (558)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~-~~~ 110 (558)
.-+.|.+|.+.+.+++....-|++..|.|.|++|..|+|..++++..+.+-.++..+++++||+|||++ |||... ++.
T Consensus 248 VL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~ 327 (448)
T COG2271 248 VLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIF 327 (448)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHH
Confidence 345688999999999999999999999999999999999999999999999999999999999999998 666543 444
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhh
Q 008632 111 SLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRA 190 (558)
Q Consensus 111 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 190 (558)
++..+++.+...++++ .+..+..+..+++|+-.-+-.-.+.....|..|.+-
T Consensus 328 ~~~i~~~~~~~w~~~~----------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------ 379 (448)
T COG2271 328 MLLITASLVLYWLAPN----------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------ 379 (448)
T ss_pred HHHHHHHHHHHHcCCC----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------
Confidence 5556666666666543 235666666777776665554555566689999877
Q ss_pred hhhhhhHHHHHHHH-HHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCc
Q 008632 191 KSSFFNWWYFGISF-GANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTK 245 (558)
Q Consensus 191 r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 245 (558)
-|++.|......-+ |+..+....|++.|.+||...|++..+..+++.+.+....+
T Consensus 380 aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 380 AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888887 99999999999999999999998777766666665554443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9e-13 Score=138.65 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=131.7
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
+++..+..+.........++.+..++|.|+++++|+++.+.+++.+...+...++.++.|+++||+ |||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 334334343333433344555667899999999999999999888887777888899999999998 9999888776655
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.+....+...++ .+.+.+.+++.+++.|...+..+.+..|.+|+ + |+++
T Consensus 293 ~~~~~~~~~~~~------------------------~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~ 341 (393)
T PRK15011 293 VCFYAGMLMAHS------------------------PAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSA 341 (393)
T ss_pred HHHHHHHHHHhh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchH
Confidence 554443333322 45566677777777776666667777888874 4 8899
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
.++++...++|..++|.++|.+.++.||+..|.+..++.+++.+..+.
T Consensus 342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999988899999999999999999889999998877777666655543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-10 Score=117.10 Aligned_cols=378 Identities=15% Similarity=0.170 Sum_probs=221.1
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcc-----hh-HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 008632 65 TGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLG-----RF-RTIVVASLIYILGLSMMTLLALITLLSSSDCQNN 138 (558)
Q Consensus 65 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 138 (558)
..++++...-.+.+.+...+.+- ..+..|+.||+. + || +.++.+.+..+.+..+..++.- ++..+-+++
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~---~l~~~~~~~ 81 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALL---LLAESGQQS 81 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHH---HHccccccc
Confidence 35788888888888888877664 578889999987 6 44 5667778888887777666532 222111111
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecc
Q 008632 139 NTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD 218 (558)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 218 (558)
+. +.........++-.+.|+|.+....+..++++|..|+++ |+++.++.+...-+|.+++.++.+.+.+
T Consensus 82 ~~-----~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 82 SG-----PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred cc-----ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 11 111223344455556788888888888999999999998 9999999888889999999999997766
Q ss_pred cccc-hh--hh-HHHHHHHHHHHHHHHHcCcceEEeC--CCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhH
Q 008632 219 NLNW-AL--GF-GIPCAFMVAALVLFLLGTKTYRFSI--KSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFL 292 (558)
Q Consensus 219 ~~g~-~~--~f-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (558)
.++- |. ++ ..+.+..++.++..+-..++..+.. +++++.+..+.++.++ .++
T Consensus 151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~---~~~------------------- 208 (403)
T PF03209_consen 151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVW---ASP------------------- 208 (403)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHH---hCC-------------------
Confidence 5552 22 12 2222233344444444333332222 1111112222111111 000
Q ss_pred HhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChh---hhhh
Q 008632 293 NKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAA---SLQL 369 (558)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 369 (558)
..++.+.. +++....+++- ...++..-|.-+..+.. .++.
T Consensus 209 ------------------------~a~~f~~f--l~l~t~a~~~Q-----------D~iLEPygg~Vfgmsv~eTT~Lta 251 (403)
T PF03209_consen 209 ------------------------QARRFFVF--LFLGTLAFFMQ-----------DVILEPYGGEVFGMSVGETTRLTA 251 (403)
T ss_pred ------------------------ChhHHHHH--HHHHHHHHHhh-----------HHHcCCchhHHcCCCHHHHHHHHH
Confidence 11222222 12222222111 11111111101122322 2344
Q ss_pred hhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhH
Q 008632 370 FIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVW 449 (558)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (558)
.-..+.++...+.++... +| ..+.+...+|..++.+++........ ..+.+
T Consensus 252 ~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~-------------------~~~~~ 302 (403)
T PF03209_consen 252 FWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP-------------------LGSPW 302 (403)
T ss_pred HHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh-------------------cccch
Confidence 445555665555555432 22 22334556677777777655444321 13567
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchh
Q 008632 450 WLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHL 529 (558)
Q Consensus 450 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~ 529 (558)
.+....+++|++.+...+...+..++..+++..|..+|.+-..+.++..++.++.+.+.|......+ +-....|
T Consensus 303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~------~~~~~aY 376 (403)
T PF03209_consen 303 LFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFG------NSPALAY 376 (403)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCcchHH
Confidence 7888889999999999887778899999999999999999999999999999999999986432111 0011334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 008632 530 DYFYWLLAALSAGGLLAFLYFAK 552 (558)
Q Consensus 530 ~~~~~~~a~~~~i~~~~~~~~~~ 552 (558)
..+|.+=+.+.++++++...+.+
T Consensus 377 ~~VF~lEa~ll~~a~~ll~~l~~ 399 (403)
T PF03209_consen 377 GVVFALEAVLLLAALVLLGRLDR 399 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 45555555665655555544433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=140.56 Aligned_cols=177 Identities=14% Similarity=0.047 Sum_probs=132.2
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.+.+|.+....++....++++..++|.|+++++|++..+.++......++..++.+++|+++||+ |||+.+.....+..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~ 335 (467)
T PRK09556 257 NPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALAL 335 (467)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 35677777777777777788889999999999999999999999999999999999999999999 99988766544444
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++..+..+... .+.....+.+++.|+...+..........|.+|++. |+++.
T Consensus 336 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~ 387 (467)
T PRK09556 336 IIFTLGVYQHA----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVAN 387 (467)
T ss_pred HHHHHHHHHhc----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHH
Confidence 33322222211 124445566666665433322222355679999888 99999
Q ss_pred hHHHHHHHH-HHHhhhhhhheecc------------cccchhhhHHHHHHHHHHHHHHH
Q 008632 196 NWWYFGISF-GANSTILVVIYIQD------------NLNWALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 196 ~~~~~~~~~-g~~~~~~~~~~l~~------------~~g~~~~f~~~~~~~~~~~~~~~ 241 (558)
++.+...++ |..++|.+.|++.+ ..||+..|.+..++.+++.+..+
T Consensus 388 gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 388 GIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 999988886 77999999999988 56899999887776666655544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-13 Score=128.67 Aligned_cols=140 Identities=14% Similarity=0.203 Sum_probs=112.2
Q ss_pred hhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008632 55 GISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSD 134 (558)
Q Consensus 55 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 134 (558)
.--..+-.+.+.+.+++.++..++.+.|+.-..+.+.++|++.||.+|-|..-++-+++..+|-++.+...-
T Consensus 61 d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-------- 132 (459)
T KOG4686|consen 61 DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-------- 132 (459)
T ss_pred CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH--------
Confidence 344556677888888888899999999999999999999999998879887666555556666655442211
Q ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 008632 135 CQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI 214 (558)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 214 (558)
...+|.+..+|++.|+|.-....+...+..-+|..++ .+.+++++....-+|..+-..+.+
T Consensus 133 -------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~ 193 (459)
T KOG4686|consen 133 -------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMP 193 (459)
T ss_pred -------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecH
Confidence 0238999999999999988877888899999999988 999999998888899988888888
Q ss_pred eeccccc
Q 008632 215 YIQDNLN 221 (558)
Q Consensus 215 ~l~~~~g 221 (558)
++.+..+
T Consensus 194 ~ly~~~~ 200 (459)
T KOG4686|consen 194 FLYDTMG 200 (459)
T ss_pred HHHHHHH
Confidence 7776543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-12 Score=138.74 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=127.3
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
+++.+.......++..+.+|++..++|.|+++.+|++..+.+++.....++..++.++.|+++||+ |||+.++.+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 344444444444566778889999999999989999998888888888888889999999999999 9999988877654
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++...+..... ..+...+++++++.+++.+...+....+..|.+|++. |+++
T Consensus 327 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~ 379 (490)
T PRK10642 327 FVLAIPAFILIN---------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSA 379 (490)
T ss_pred HHHHHHHHHHHh---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHH
Confidence 444333222111 0125566778888887777666777788889999998 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVL 239 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~ 239 (558)
+++.+....+++.++|.+.+++.+..+ |+.++++..+..+++.+.
T Consensus 380 ~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~ 425 (490)
T PRK10642 380 LAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT 425 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 998544456667889999998876543 666655444444444333
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=134.41 Aligned_cols=170 Identities=16% Similarity=0.154 Sum_probs=133.7
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+..+......++..+.........+.|. +++|.+..+.+++.+.+.+...++.++.|+++||+ |||+.+..+.++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV 282 (377)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence 3344444444444444444555566665 46889999999999999999999999999999999 999999998888888
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+.+++.+.++ .....++...++.+++.+...+..+.+..|.+|+++ |++..+
T Consensus 283 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g 334 (377)
T TIGR00890 283 GMAAMLFIPM----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYG 334 (377)
T ss_pred HHHHHHHccc----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhH
Confidence 8777665432 112334455677788888887888889999999888 999999
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAA 236 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~ 236 (558)
+++...++|..++|.+.|.+.++.||+..|.+.+++.+++
T Consensus 335 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 335 FLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999998877665554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=136.45 Aligned_cols=168 Identities=17% Similarity=0.148 Sum_probs=130.6
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+.++......++....++....+++.|+++++|.+..+.+.+.....+...++.++.|+++||+ |||+.+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence 3466666666777777888888999999989999999999999999999999999999999998 999988765544433
Q ss_pred HH-HHHH-HHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 117 GL-SMMT-LLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 117 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.. .... .... .+.+.+....++.+++.+...+...+++.|.+|+++ |+++
T Consensus 298 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~ 349 (394)
T TIGR00883 298 LAVPLLMALLDS----------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTG 349 (394)
T ss_pred HHHHHHHHHhcC----------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeE
Confidence 33 2221 2111 125556667788888888888899999999999988 9999
Q ss_pred hhH-HHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHH
Q 008632 195 FNW-WYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFM 233 (558)
Q Consensus 195 ~~~-~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~ 233 (558)
.++ ++.+..+|..++|.++|.+.++.| |+..++...++.
T Consensus 350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 998 455567899999999999999888 887766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-12 Score=135.43 Aligned_cols=182 Identities=20% Similarity=0.138 Sum_probs=129.9
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
++++....+....++..+.+|....+++.|+++++|++......+.........++.++.|+++||+ |||+++..+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 3444444444556667778888889999999999999988766555666677778889999999998 999998887766
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
..++...+..... . ....+.+++..++.+++.+...+..+++++|.+|.+. |++
T Consensus 326 ~~~~~~~~~~~~~--~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~t 379 (438)
T PRK09952 326 GTLSAFPFFMALE--A------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYS 379 (438)
T ss_pred HHHHHHHHHHHHH--c------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHH
Confidence 5554433333211 0 0113334445566677877777888899999999987 988
Q ss_pred hhhH-HHHHHHHHHHhhhhhhheecccc--cchhhhHHHHHHHHHHHHHHHH
Q 008632 194 FFNW-WYFGISFGANSTILVVIYIQDNL--NWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 194 ~~~~-~~~~~~~g~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
+.++ ++.+..+|+.++|.+.+++.+.. +|...+...+++.+++.+..+.
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 8888 44445689999999999987743 4777777666666666555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.2e-12 Score=129.86 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=125.5
Q ss_pred hhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008632 53 YYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSS 132 (558)
Q Consensus 53 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 132 (558)
.......++.|+++++|.+..+.+++.........++.+++|+++||+ |||+.+..+.++..++.......++
T Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~------ 287 (375)
T TIGR00899 215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADNS------ 287 (375)
T ss_pred HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHH------
Confidence 344556778899889999999999888877777778889999999998 9999988877665555444444332
Q ss_pred ccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhh
Q 008632 133 SDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILV 212 (558)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 212 (558)
.+.+++.+++.+++.+...+....+..|..|+ + ++++.++++...++|..++|.+
T Consensus 288 ------------------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~g~~~ 342 (375)
T TIGR00899 288 ------------------LWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWIIAGSV 342 (375)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHH
Confidence 56667778888888888777778888888875 3 6699999999999999999999
Q ss_pred hheecccccchhhhHHHHHHHHHHHHHHH
Q 008632 213 VIYIQDNLNWALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 213 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 241 (558)
.|.+.+..||+..|++.+++.+++.+...
T Consensus 343 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 343 GGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 99999988999999888877666665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=132.31 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=129.0
Q ss_pred ccccCCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhcc-ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcch-hHH
Q 008632 29 DRLNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTG-QLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGR-FRT 106 (558)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~ 106 (558)
.+..+.+||.++.+....++....+..+.+..-+|+++ +.+-+.+-.|++.+...++..+..+..|+.+.|. |+ |+-
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P 104 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP 104 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence 33446789999999999999888888888888888885 5788888999999999999999999999999998 75 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChh
Q 008632 107 IVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ 186 (558)
Q Consensus 107 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 186 (558)
++.+.++.++|.++.......+. ...+.+.++|++.|+|.|.. ...-+++++....++
T Consensus 105 li~s~ii~~~g~llY~~l~~~~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d-- 162 (488)
T KOG2325|consen 105 LIVSFLIAIIGNLLYLALAYVPN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED-- 162 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc--
Confidence 78899999999999844333111 24788999999999997774 566688888877776
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhhhhhe
Q 008632 187 ERRAKSSFFNWWYFGISFGANSTILVVIY 215 (558)
Q Consensus 187 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 215 (558)
|.++++....+..+|..+||.+...
T Consensus 163 ----R~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 163 ----RPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred ----hHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 8889888877777777777766543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-12 Score=132.03 Aligned_cols=164 Identities=17% Similarity=0.144 Sum_probs=129.3
Q ss_pred HHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 49 ERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALIT 128 (558)
Q Consensus 49 ~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 128 (558)
..+.+.....+++.|+++ .|.+ +.++..+.+.++..++.++.|+++||+ |||+.+..+.++..++..+....++
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~-- 301 (399)
T PRK05122 228 ASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAPS-- 301 (399)
T ss_pred HHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 344555666778888764 4553 345566777788889999999999998 9999998888888887777666533
Q ss_pred hcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHh
Q 008632 129 LLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANS 208 (558)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 208 (558)
.+.+++.+++.|++.+...+.......|.+|+++ |+++.++++...++|..+
T Consensus 302 ----------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~ 353 (399)
T PRK05122 302 ----------------------PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGI 353 (399)
T ss_pred ----------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHH
Confidence 5566778889999998888877777888888877 999999999999999999
Q ss_pred hhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcc
Q 008632 209 TILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKT 246 (558)
Q Consensus 209 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 246 (558)
++.+.|.+.+..||+..|++.+++.+++.+.....+++
T Consensus 354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999998899999988877766666555444433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-12 Score=134.84 Aligned_cols=179 Identities=11% Similarity=0.125 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGES--------TATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVA 110 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~ 110 (558)
++......++..........+++.|+++ .|.+ ....+...+...+...++.++.|+++||+ |||+++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~ 287 (418)
T TIGR00889 210 MAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLS 287 (418)
T ss_pred eeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHH
Confidence 3334444444433333444666777764 4433 36678888889889999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhh
Q 008632 111 SLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRA 190 (558)
Q Consensus 111 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 190 (558)
.++..++..+...... .....+.+++.+++.|++.+...+....+++|.+|++.
T Consensus 288 ~~~~~v~~~l~~~~~~--------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------ 341 (418)
T TIGR00889 288 LVAWALRFGFFAYGDP--------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------ 341 (418)
T ss_pred HHHHHHHHHHHHHcCc--------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 9988888766665321 00124567778899999998888888999999999887
Q ss_pred hhhhhhHHH-HHHHHHHHhhhhhhheeccc------ccchhhhHHHHHHHHHHHHHHHHcCc
Q 008632 191 KSSFFNWWY-FGISFGANSTILVVIYIQDN------LNWALGFGIPCAFMVAALVLFLLGTK 245 (558)
Q Consensus 191 r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~ 245 (558)
|+++.++.+ ...++|..+||.++|.+.++ .||+..|.+.+++.+++.+.++...+
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999997 56789999999999999886 46999998777766655555444333
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=126.01 Aligned_cols=166 Identities=24% Similarity=0.320 Sum_probs=145.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhH-HHHHHHHHHHHHHHHHH
Q 008632 44 GVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFR-TIVVASLIYILGLSMMT 122 (558)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~~~~~~~~~~i~~~~~~ 122 (558)
...++..........+.+.+.++.+|.+..+.+.+.....+...++.++.|+++||+ |||+ .+..+.++..++.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHH
Confidence 334455555666778888888888899999999999999999999999999999999 9999 99999998888888887
Q ss_pred HHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHH
Q 008632 123 LLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGI 202 (558)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 202 (558)
..++ .+.+.+..++.+++.+...+....++.|..|+++ |++.+++++...
T Consensus 261 ~~~~------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 310 (352)
T cd06174 261 LAPS------------------------LALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTFG 310 (352)
T ss_pred Hhcc------------------------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHHH
Confidence 7643 6778888999999999999999999999999877 999999999999
Q ss_pred HHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008632 203 SFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 203 ~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
++|..+++.+.+.+.+..+|+..|.+.+++.+++.+..
T Consensus 311 ~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999988899999998887776665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=127.93 Aligned_cols=176 Identities=14% Similarity=-0.024 Sum_probs=127.8
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHH-HHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTI-VVASLIYI 115 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~-~~~~~~~~ 115 (558)
|.++......++....+.....+++.|+++++|.+..+.+++.+...+...++.++.|+++||+ |||+.. ........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 4566666666777777788888999999999999999999999999999999999999999998 998611 11111111
Q ss_pred HHHH---HHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 116 LGLS---MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 116 i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
++.+ +..+... .....+.......+.+.+.+ ..+...++..|.+|+++ |+
T Consensus 294 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g 346 (399)
T TIGR00893 294 IAGLVLSLLMFATN--------------------YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AG 346 (399)
T ss_pred HHHHHHHHHHHHhc--------------------cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HH
Confidence 1111 1111110 00113333333333444444 67888999999999888 99
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHH
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~ 240 (558)
++.++.+...++|..++|.+.|.+.+..| |+..|.+.++..+++.+..
T Consensus 347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888 9999887777666555444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.3e-12 Score=131.53 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=127.0
Q ss_pred HHHhhhhHHHHHHHhccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008632 50 RFAYYGISSNLITYLTGQLGESTA---TAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLAL 126 (558)
Q Consensus 50 ~~~~~~~~~~l~~yl~~~~~~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~ 126 (558)
........+.++.|+.+..+.... ..+.+.....+...++.+..|+++||+ |||+.+..+.++..++.+......+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T PRK09874 232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFVQT 310 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHhcc
Confidence 333444556677787765443221 245555666777788889999999998 9999999888877776666555433
Q ss_pred hhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHH
Q 008632 127 ITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA 206 (558)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 206 (558)
.+.+++.+++.|++.+...+...+.+.+..|++. |++.+++++...++|.
T Consensus 311 ------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~ 360 (408)
T PRK09874 311 ------------------------PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGN 360 (408)
T ss_pred ------------------------HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHH
Confidence 6667788899999999988888888888888887 9999999999999999
Q ss_pred HhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 207 NSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 207 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
.+||.++|.+.+..||+..|++.+++.+++.+..+.
T Consensus 361 ~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 361 VTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877766655544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=130.01 Aligned_cols=163 Identities=13% Similarity=0.037 Sum_probs=126.0
Q ss_pred HHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008632 47 VAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLAL 126 (558)
Q Consensus 47 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~ 126 (558)
++....++.+..++|.|+++ .|++..+.+.+...+.++..++.++.|+++||+ |||+.+..+.+...++.......++
T Consensus 230 ~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (406)
T PRK11551 230 FFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAAAPS 307 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34444566677788888875 799999999999999999999999999999998 9999988876666655554444322
Q ss_pred hhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHH
Q 008632 127 ITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGA 206 (558)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 206 (558)
.+.+.+..++.|++.++..+...++..|.+|+++ |+++.++.+....+|.
T Consensus 308 ------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~ 357 (406)
T PRK11551 308 ------------------------FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGS 357 (406)
T ss_pred ------------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHH
Confidence 4445556667777777777888889999999988 9999999999999999
Q ss_pred Hhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHH
Q 008632 207 NSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 207 ~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~ 241 (558)
.++|.+.|.+.++.+ |...+++...+.+++.+..+
T Consensus 358 ~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 358 MAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999988654 55556555555444444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=127.74 Aligned_cols=173 Identities=13% Similarity=-0.010 Sum_probs=130.8
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGL 118 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~ 118 (558)
++......++.....++...+++.|+++++|.+..+.+++.+...+...++.++.|+++||+ |||+.+. +..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~-~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLLI-AIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHH-HHHHHHHHH
Confidence 34344444444455556667788888888999999999999999999999999999999998 9887544 444333333
Q ss_pred HHH-HHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH
Q 008632 119 SMM-TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 119 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (558)
... ...+ +.+.+++..++.|++.+...+.....+.|..| ++ |++++++
T Consensus 285 ~~l~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~ 333 (390)
T PRK03545 285 LLLLPAAN------------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMAL 333 (390)
T ss_pred HHHHHHhc------------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHH
Confidence 332 2222 25566777788888887777777777778766 45 8999999
Q ss_pred HHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcC
Q 008632 198 WYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGT 244 (558)
Q Consensus 198 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 244 (558)
++...++|..+||+++|.+.++.|++..|.+.+.+.+++.+......
T Consensus 334 ~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 334 FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99889999999999999999999999999988887777666655443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-10 Score=116.59 Aligned_cols=136 Identities=12% Similarity=0.101 Sum_probs=108.2
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 008632 59 NLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNN 138 (558)
Q Consensus 59 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 138 (558)
...+|..+-+| +...+-|...+|.+.+......+-|+.||+ |-|.+.+++..+..+|..+=.++..+ .+.
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~p-~v~------- 135 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSLP-FVP------- 135 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccCc-ccc-------
Confidence 34556666777 777788889999999999999999999999 99999999999999999887666431 100
Q ss_pred CCCCCCCCCchhHH--HHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhee
Q 008632 139 NTAKSCSPHHFQII--VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI 216 (558)
Q Consensus 139 ~~~~~~~~~~~~~~--~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 216 (558)
..++ ..+.+..+.+.+.-.+....+-..+-+|++++ |..+..+-.++..+|.+++.++...+
T Consensus 136 ----------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 136 ----------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred ----------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhcccee
Confidence 1133 67788888888888887777777888999988 99999988888888888888887777
Q ss_pred cccc
Q 008632 217 QDNL 220 (558)
Q Consensus 217 ~~~~ 220 (558)
..+.
T Consensus 200 V~~~ 203 (480)
T KOG2563|consen 200 VPSS 203 (480)
T ss_pred cCCC
Confidence 6543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-12 Score=133.65 Aligned_cols=157 Identities=10% Similarity=0.064 Sum_probs=125.0
Q ss_pred hhhhHHHHHHHhccc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 53 YYGISSNLITYLTGQ---LGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITL 129 (558)
Q Consensus 53 ~~~~~~~l~~yl~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 129 (558)
+......++.|+.+. .+.+..+.+.+.+...+...++.++.|+++||+ |||+.+..+.++..++..+.++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~~--- 314 (420)
T PRK09528 239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFATG--- 314 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhccc---
Confidence 333444566666543 356777889999999899999999999999999 9999999988888888888776544
Q ss_pred cccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH-HHHHHHHHHHh
Q 008632 130 LSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW-WYFGISFGANS 208 (558)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~ 208 (558)
.+.+++.+++.+++.+...+....++.|.+|++. |++..+. +++..++|..+
T Consensus 315 ---------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~i 367 (420)
T PRK09528 315 ---------------------PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVF 367 (420)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHH
Confidence 6667788888888887777777788899998877 7777665 67778899999
Q ss_pred hhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008632 209 TILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 209 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
+|.+.|++.+..||+..|.+.+++.++..++.
T Consensus 368 g~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 368 LSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987776655444443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-12 Score=134.01 Aligned_cols=176 Identities=15% Similarity=0.052 Sum_probs=120.5
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcch--hHHH-HHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGR--FRTI-VVASL 112 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--r~~~-~~~~~ 112 (558)
.+.+|...+..++.....++...++|.|++++.|++..+.+.+...+.+...++.+++|+++||+ ++ |+.. .....
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~ 330 (452)
T PRK11273 252 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT 330 (452)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHH
Confidence 35566666666666677788889999999999999999999988888889999999999999997 54 3322 22222
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 113 IYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
+..++.++..+... .+.+...+..++.|.+..........+..|.+|++. |+
T Consensus 331 l~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g 382 (452)
T PRK11273 331 LVTIATIVYWLNPA----------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AG 382 (452)
T ss_pred HHHHHHHHHHHhcc----------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hh
Confidence 33333332222111 112333333444444322222223345679999888 99
Q ss_pred hhhhHHHHHHHHHHHh-hhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008632 193 SFFNWWYFGISFGANS-TILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~-~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
++.++.+...++|+.+ +|.+.|.+.++.||+..|++.++..+++.+..
T Consensus 383 ~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 383 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999888888654 89999999999999999987777655554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=129.28 Aligned_cols=170 Identities=12% Similarity=0.072 Sum_probs=129.4
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+.++.+....++....++++..++|.|+++++|++..+.+.+.+.+.++..++.++.|+++||+ |||+.+.....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 3444444444555566778889999999999999999999999999999999999999999998 999998877666555
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
...+....++ .+.+.+..++.|++.+...+...+...|..|.+ +++..+
T Consensus 284 ~~~~~~~~~~------------------------~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g 332 (394)
T PRK03699 284 LMYLFVNTDD------------------------PSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVN 332 (394)
T ss_pred HHHHHHHcCC------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHH
Confidence 5444433322 334455567778877777777777777776643 455677
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALV 238 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 238 (558)
......++|..++|.+.|++.+..|++..++..+++.+++.+
T Consensus 333 ~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 333 FILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 777788899999999999999999999988766665554433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-11 Score=126.09 Aligned_cols=171 Identities=8% Similarity=-0.028 Sum_probs=142.7
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.|.++......++...++....++.+.|+++ +|.+..+.+++.+...+...+..++.|++.||+ |+|+.+..+.+...
T Consensus 204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~ 281 (382)
T TIGR00902 204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACV 281 (382)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHH
Confidence 3556666666666667777788889999975 899999999999998889999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
+..++..+.++ .+.+++..++.|+..|...+....++.+. |+++ |+++.
T Consensus 282 ~~~~~~~~~~~------------------------~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q 330 (382)
T TIGR00902 282 GRWAIIGAIEA------------------------FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQ 330 (382)
T ss_pred HHHHHHHhHhh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHH
Confidence 99988887655 78888899999999999999999999987 7766 88889
Q ss_pred hHHH-HHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008632 196 NWWY-FGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 196 ~~~~-~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
++++ ....+|..+++.++|++.++.|+ ..|.+.+++.+++.+..
T Consensus 331 ~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 331 ALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 9876 45679999999999999999886 56666666655554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-13 Score=147.77 Aligned_cols=197 Identities=15% Similarity=0.195 Sum_probs=3.0
Q ss_pred HHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 008632 45 VEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLL 124 (558)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~ 124 (558)
..+.+ ....++.....+-+++.|+++.+++|++.+.+.++..+..++..++++|. -|-|.+-.+.+++++|.+++++.
T Consensus 11 ~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 11 LGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhcc
Confidence 33444 55667777777789999999999999999999999999999999999997 78888889999999999999886
Q ss_pred HHhhhcc-cc-----cccCCCCCCCC---------------C-----CCchhHHHHHHHHHHHHHccccccccccccccc
Q 008632 125 ALITLLS-SS-----DCQNNNTAKSC---------------S-----PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGAD 178 (558)
Q Consensus 125 ~~~~~~~-~~-----~~~~~~~~~~~---------------~-----~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~ 178 (558)
|...--- .. .|.+.+...-| . ........++++.++.|+|....++...+|+=|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 5532110 00 01111111111 1 111235789999999999999999999999999
Q ss_pred CCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecc---------------------ccc-chhhhHHHHHHHHHH
Q 008632 179 QFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD---------------------NLN-WALGFGIPCAFMVAA 236 (558)
Q Consensus 179 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------------------~~g-~~~~f~~~~~~~~~~ 236 (558)
..++++ -+.++|+.+....+|.++|.++++.... +.| |...|.+.+.+.++.
T Consensus 169 nv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 169 NVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999888 8999999999999999999999886532 123 777777777766655
Q ss_pred HHHHHHcCcceEE
Q 008632 237 LVLFLLGTKTYRF 249 (558)
Q Consensus 237 ~~~~~~~~~~~~~ 249 (558)
.+.++...++.+.
T Consensus 243 aipl~~FPk~lp~ 255 (539)
T PF03137_consen 243 AIPLFFFPKKLPG 255 (539)
T ss_dssp -------------
T ss_pred HHHHHcCCccCCC
Confidence 5555554444443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-11 Score=130.50 Aligned_cols=178 Identities=12% Similarity=0.043 Sum_probs=118.9
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcch--hHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGR--FRTIVVASLIY 114 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--r~~~~~~~~~~ 114 (558)
+.++.+....++....++++..++|.|+++++|++..+.++..+.+.++..++.++.|+++||+.+| ++......+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 4455555555555666677888999999889999999999999999999999999999999997222 23222222211
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.+.......... .+.....+..+..|++..+.........+|.+|++. |+++
T Consensus 323 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 374 (434)
T PRK11663 323 LLSVGSLWLMPF----------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAA 374 (434)
T ss_pred HHHHHHHHHccc----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhH
Confidence 212111111111 112222222233333222211223445688888777 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
.++.+...++|..++|.+.|++.+..||+..|+..+++.+++.+..+.
T Consensus 375 ~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 375 TGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877776665554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=136.56 Aligned_cols=134 Identities=13% Similarity=0.033 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHH
Q 008632 76 AAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFI 155 (558)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (558)
.+......++..++.+++|+++||+ |||++++.++++.+++.++.++..+ ...++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s------------------------~~~ll 652 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNS------------------------ESAMI 652 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcc------------------------HHHHH
Confidence 3445566678889999999999998 9999999999998888888777643 44566
Q ss_pred HHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHH
Q 008632 156 FSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVA 235 (558)
Q Consensus 156 ~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 235 (558)
+.+++.++..++..+...++++|++|.+. |++++++.+....+|++++|.+++.+.+. +...+|++.+++.++
T Consensus 653 ~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll 725 (742)
T TIGR01299 653 ALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALAC 725 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 66777787777778888999999999988 99999999999999999999999987664 456677777666555
Q ss_pred HHHHHH
Q 008632 236 ALVLFL 241 (558)
Q Consensus 236 ~~~~~~ 241 (558)
+.++..
T Consensus 726 ~~ll~~ 731 (742)
T TIGR01299 726 GGLLAL 731 (742)
T ss_pred HHHHHH
Confidence 544443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=130.34 Aligned_cols=159 Identities=13% Similarity=0.010 Sum_probs=129.9
Q ss_pred hhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008632 53 YYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSS 132 (558)
Q Consensus 53 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 132 (558)
..++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++||. ++++.+..+.++.+++.++..+.++
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~------ 311 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMPM------ 311 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccch------
Confidence 345667789999988999999999999999999999999999999997 8888888888777777766655433
Q ss_pred ccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhh
Q 008632 133 SDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILV 212 (558)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 212 (558)
.+...+..++.|++.+...+...+++.|..|++. |+++.++++...++|..+||.+
T Consensus 312 ------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 312 ------------------WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHH
Confidence 5556677778888887777777788899999877 9999999999999999999999
Q ss_pred hheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 213 VIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 213 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
.|.+.+..|++..+.+.++..++..++...
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 999999989888887666654444334333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-11 Score=125.88 Aligned_cols=176 Identities=13% Similarity=0.041 Sum_probs=128.9
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHH-HHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIV-VASLIY 114 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-~~~~~~ 114 (558)
.|.++......++....+++...++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~ 298 (402)
T TIGR00897 221 NPNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGC 298 (402)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHH
Confidence 355666666667777788888899999986 5899999999999999999999999999999998 9988764 333333
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++...+....... ..+.+..++..++.|++.+...+ ......|..| ++ |+++
T Consensus 299 ~~~~~~l~~~~~~~-------------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g~~ 351 (402)
T TIGR00897 299 GIFTLALYYIPQHF-------------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KGAA 351 (402)
T ss_pred HHHHHHHHHHHHcc-------------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hHHH
Confidence 33333333221100 01245556667777877776544 3455566544 45 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
.++.+...++|..++|.+.+.+.+..||...|++.+++.+++.+..
T Consensus 352 ~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 352 MSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877665554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-11 Score=123.65 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=122.0
Q ss_pred HhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008632 52 AYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLS 131 (558)
Q Consensus 52 ~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 131 (558)
.+.....++|.|+++ .|.+..+.++..+...++..++.++.|+++||+ |||+++..+.++..++.++.. . .
T Consensus 215 ~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~-~----- 285 (381)
T PRK03633 215 VLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S-Q----- 285 (381)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-h-----
Confidence 333445667888875 699999999999999999999999999999999 999999888777776655432 1 1
Q ss_pred cccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhh
Q 008632 132 SSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTIL 211 (558)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 211 (558)
......+++.|++.+...|...+.+.|..|+++ ++...+.++...++|..+||.
T Consensus 286 --------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~ 339 (381)
T PRK03633 286 --------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPS 339 (381)
T ss_pred --------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 123345566677766777888888899888766 777788888888999999999
Q ss_pred hhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 212 VVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 212 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
++|.+.++.||++.|.+.+.+.++..+..++
T Consensus 340 ~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 340 FTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998877776665544443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-12 Score=110.10 Aligned_cols=131 Identities=21% Similarity=0.306 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHH
Q 008632 80 NVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLY 159 (558)
Q Consensus 80 ~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (558)
+.+.++..++.++.|+++||+ |||+.+..+..+..++.+++....+ .+.+.+.++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~ 59 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSSN------------------------ITVLIIARF 59 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhcc------------------------HHHHHHHHH
Confidence 345567778899999999998 9999999998888888887776543 677888899
Q ss_pred HHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008632 160 LVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 160 l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
+.|++.+...+...++..|.+|+++ |++..++.+...++|..++|.+.+.+.+..+|++.|++.....+++.+.
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 60 LQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999988999999999999887 9999999999999999999999999998889999988877666555544
Q ss_pred HH
Q 008632 240 FL 241 (558)
Q Consensus 240 ~~ 241 (558)
..
T Consensus 134 ~~ 135 (141)
T TIGR00880 134 LA 135 (141)
T ss_pred Hh
Confidence 43
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=122.48 Aligned_cols=174 Identities=13% Similarity=0.080 Sum_probs=131.8
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHH
Q 008632 38 AASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILG 117 (558)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~ 117 (558)
..+.+....++...++++...++|.|+++ +|.+..+.+...+.+.++..++.++.|+++||+ |||+.+..+..+..++
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVG 283 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence 34444455555667788888999999986 799999999999999999999999999999998 9999998887777776
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCC-CCChhhhhhhhhhhh
Q 008632 118 LSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFD-AQNPQERRAKSSFFN 196 (558)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~ 196 (558)
..+....+. +...+ ..++.|++.+...+.......+..+ +++ |++.++
T Consensus 284 ~~~~~~~~~-----------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g 332 (393)
T PRK09705 284 FCGFIWLPL-----------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVA 332 (393)
T ss_pred HHHHHHccc-----------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHH
Confidence 655443211 01112 1245677877777777766777775 344 899999
Q ss_pred HHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHHHcC
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFLLGT 244 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~ 244 (558)
+.+...+++..++|.+.|++.+..| |...|.+.+++.++..+......
T Consensus 333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999876 78888877766665555544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-11 Score=129.82 Aligned_cols=173 Identities=13% Similarity=0.020 Sum_probs=134.8
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhh-cchhHHHHHHH--H
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSF-LGRFRTIVVAS--L 112 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~~~~~~--~ 112 (558)
.+.++......++..++++....+++.|++ ++|++..+.+++.+...++..++.+++|+++||. .++|+....+. +
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 318 (455)
T TIGR00892 240 HRGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL 318 (455)
T ss_pred CchHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence 355666666666677777778888999986 4799999999999999999999999999999973 14444443333 3
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 113 IYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
...++.+++...+ +.+.+++.+++.|++.+...+...+++.|.+|+++ ++
T Consensus 319 ~~~l~~ll~~~~~------------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g 368 (455)
T TIGR00892 319 FNGLTHLLCALAG------------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FS 368 (455)
T ss_pred HHHHHHHHHHHhc------------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------Hh
Confidence 3333333433332 26677888999999999998999999999999877 99
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheecccc-cchhhhHHHHHHHHHHHHH
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNL-NWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~ 239 (558)
+.+++++...++|..+||.++|.+.+.. +|+..|++.+++.+++.+.
T Consensus 369 ~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 369 SAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred hHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 9999999999999999999999998877 4999998887766655443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-11 Score=126.58 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHH
Q 008632 44 GVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTL 123 (558)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~ 123 (558)
....+.+........++|.|+++++|++..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..+.......
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 323 (405)
T TIGR00891 245 VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFA 323 (405)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHH
Confidence 333344455556777889999999999999999999999999999999999999998 9999988877654332222211
Q ss_pred HHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHH
Q 008632 124 LALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGIS 203 (558)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 203 (558)
. . .+.+.+.+..++.++..++..+..++++.|.+|+++ |++++++.+...+
T Consensus 324 ~-~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~ 374 (405)
T TIGR00891 324 I-G----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGN 374 (405)
T ss_pred h-C----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHH
Confidence 1 1 124455566666666666777788889999999988 9999999999999
Q ss_pred HHHHhhhhhhheeccccc-chhhhHH
Q 008632 204 FGANSTILVVIYIQDNLN-WALGFGI 228 (558)
Q Consensus 204 ~g~~~~~~~~~~l~~~~g-~~~~f~~ 228 (558)
+|..++|.+.|.+.++.| |+..+..
T Consensus 375 ~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 375 LGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHh
Confidence 999999999999999888 7766554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=126.75 Aligned_cols=148 Identities=19% Similarity=0.170 Sum_probs=115.0
Q ss_pred hhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008632 55 GISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSD 134 (558)
Q Consensus 55 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 134 (558)
....++|.|+++++|++..+.+++.+...++..++.+++|+++||+ |||+++..+.++..++.++......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4567899999989999999999999999999999999999999998 9999988877666555544333211
Q ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 008632 135 CQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI 214 (558)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 214 (558)
...+.+.+..++.+....+..+..++++.|.+|+++ |++.+++++...++|..+||.++|
T Consensus 364 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 364 --------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred --------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHH
Confidence 123333344444333333345667788899999887 999999999999999999999999
Q ss_pred eecccccchhhhHHHHH
Q 008632 215 YIQDNLNWALGFGIPCA 231 (558)
Q Consensus 215 ~l~~~~g~~~~f~~~~~ 231 (558)
.+.+.+||+..+.+.+.
T Consensus 424 ~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 424 LIAQRLDLGTALASLSF 440 (496)
T ss_pred HHhccCChHHHHHHHHH
Confidence 99999999877755443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.8e-11 Score=124.71 Aligned_cols=159 Identities=14% Similarity=0.163 Sum_probs=127.2
Q ss_pred HHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 50 RFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITL 129 (558)
Q Consensus 50 ~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 129 (558)
...+..+..+.+.|+++ .|.+. .++....+.++..++.++.|++.||+ ||||.+..+..+..++.++..+.++
T Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~--- 301 (392)
T PRK12382 229 GVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAPT--- 301 (392)
T ss_pred HHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHccc---
Confidence 34455566677778764 45553 45556667777888999999999998 9999999888888888776665432
Q ss_pred cccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhh
Q 008632 130 LSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANST 209 (558)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 209 (558)
.+..++..++.|++.+...+...+...|.+|+++ |+++.++++...++|..++
T Consensus 302 ---------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig 354 (392)
T PRK12382 302 ---------------------AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVS 354 (392)
T ss_pred ---------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 5566778888899988888888888889998877 9999999999999999999
Q ss_pred hhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 210 ILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 210 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
|.+.|.+.++.||+..|.+.+.+.+++.+..+.
T Consensus 355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 355 GPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888777666655443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=110.99 Aligned_cols=80 Identities=9% Similarity=-0.022 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccc----------
Q 008632 150 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN---------- 219 (558)
Q Consensus 150 ~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------- 219 (558)
++..++++.++.|.|.+...+..++++++..|+++ +.+.+++.+....+|..++|++++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 47889999999999999999999999999999888 99999999999999999999999976631
Q ss_pred ------ccchhhhHHHHHHHHH
Q 008632 220 ------LNWALGFGIPCAFMVA 235 (558)
Q Consensus 220 ------~g~~~~f~~~~~~~~~ 235 (558)
.+|+++|++.+.+.++
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3688888855544333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=119.39 Aligned_cols=205 Identities=17% Similarity=0.238 Sum_probs=152.9
Q ss_pred cchhhHHHHHH-HHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 36 WRAASFIIGVE-VAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 36 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
.+.+..+.... +.+... .++.....+-+.+.|+++.++.|++.+.+-++..+...+..+.+-|. =|-|++-.+.+++
T Consensus 95 ~k~fl~~l~~~~~~q~l~-~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m 172 (735)
T KOG3626|consen 95 IKMFLVLLSLAAFAQGLY-VGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLM 172 (735)
T ss_pred cchHHHHHHHHHHHHHhh-hhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHH
Confidence 34555555444 444444 48888888889999999999999999999999999999999999997 8888888999999
Q ss_pred HHHHHHHHHHHHhhhc------c-------c----ccccCCCCCCCCC-----------CCchhHHHHHHHHHHHHHccc
Q 008632 115 ILGLSMMTLLALITLL------S-------S----SDCQNNNTAKSCS-----------PHHFQIIVFIFSLYLVAIGQG 166 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~------~-------~----~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~gig~g 166 (558)
++|.+++.+.|....- . + +.|..++..+.|. .+...+..++++.++.|+|..
T Consensus 173 ~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T 252 (735)
T KOG3626|consen 173 GLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT 252 (735)
T ss_pred HHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence 9999999887542210 0 0 0122222223333 111235588899999999999
Q ss_pred ccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecc------------------ccc-chhhhH
Q 008632 167 GHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD------------------NLN-WALGFG 227 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------------------~~g-~~~~f~ 227 (558)
.+.+...+++=|....++ -...+++.+....+|.++|.++++++.. +.| |+..|.
T Consensus 253 pi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL 326 (735)
T KOG3626|consen 253 PIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL 326 (735)
T ss_pred CCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence 999999999999998887 8999999999999999999999886532 123 777888
Q ss_pred HHHHHHHHHHHHHHHcCcceE
Q 008632 228 IPCAFMVAALVLFLLGTKTYR 248 (558)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~ 248 (558)
+.+.+.++..+.+++..+..+
T Consensus 327 i~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 327 ICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHHhCcccCc
Confidence 888777777666665554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8e-11 Score=125.58 Aligned_cols=153 Identities=12% Similarity=0.065 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHH-H
Q 008632 43 IGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSM-M 121 (558)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~-~ 121 (558)
....++....++.+..++|.|+++.+|++..+.++....+.++..++.++.|+++||+ |||+.++.+.++..+...+ .
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 3444455666778889999999988999999999888888888999999999999999 9999887765443322211 1
Q ss_pred HHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHH-
Q 008632 122 TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYF- 200 (558)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~- 200 (558)
..... ........+..++.+++.+...+....+..|.+|++. |+++.++.+.
T Consensus 323 ~~~~~---------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~ 375 (434)
T PRK15075 323 SWLVA---------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSL 375 (434)
T ss_pred HHHHc---------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHH
Confidence 11111 0112233333444556666666666778899999998 9999998544
Q ss_pred HHHHHHHhhhhhhheecccccch
Q 008632 201 GISFGANSTILVVIYIQDNLNWA 223 (558)
Q Consensus 201 ~~~~g~~~~~~~~~~l~~~~g~~ 223 (558)
+..+++.++|.+.+.+.+..|++
T Consensus 376 ~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 376 ATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHhhhHHHHHHHHHHhcCCc
Confidence 44456788999999998887753
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=120.89 Aligned_cols=162 Identities=18% Similarity=0.153 Sum_probs=116.9
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH--H
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI--Y 114 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~--~ 114 (558)
+.++.+....++..........+++.|+++.+|++..+.++..+...+...++.++.|+++||..+||+........ .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666666667778888999999999999999999999999999999999999999862444433222111 1
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++......... .+.....+..++.|....+..+....+..|.+|++. |+++
T Consensus 296 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 347 (379)
T TIGR00881 296 IVSLLVYWLNPA----------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTA 347 (379)
T ss_pred HHHHHHHhcCcc----------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHH
Confidence 111111111100 123344455555665555555556677899999888 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhh
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGF 226 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f 226 (558)
.++++...++|..++|.+.|.+.+..||+..|
T Consensus 348 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999998764
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=120.86 Aligned_cols=167 Identities=15% Similarity=0.073 Sum_probs=108.4
Q ss_pred HHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHH-H
Q 008632 46 EVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTL-L 124 (558)
Q Consensus 46 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~-~ 124 (558)
.++....+|++..++|.|+++++|.+..+.+...+.......++.++.|+++||+ |||+.+..+.++..+....... .
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677888999999999999999999999888888888888889999999998 9999887765544333322211 1
Q ss_pred HHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHH-
Q 008632 125 ALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGIS- 203 (558)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~- 203 (558)
.. ..+.........+...+.+...+....+.+|.+|++. |+++.++.+...+
T Consensus 331 ~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~ 383 (432)
T PRK10406 331 QN---------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANA 383 (432)
T ss_pred Hc---------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHH
Confidence 11 0011111111122222233333456678899999998 9999999776554
Q ss_pred HHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHH
Q 008632 204 FGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 204 ~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~ 241 (558)
+++...|.+.+.+.. .| |...++..++..+++.+..+
T Consensus 384 ~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 384 LFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHH
Confidence 445558888886643 45 55555555555555444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=116.29 Aligned_cols=187 Identities=19% Similarity=0.101 Sum_probs=145.3
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
.+.+..|.+.+..+..--++-++..++|.|++++|+.++.+++.+...+.+.+.+..+++|+|+||+ |.+|+.+.....
T Consensus 215 ~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~ 293 (417)
T COG2223 215 FSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVG 293 (417)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHH
Confidence 3456788888877777777788999999999999999999999999999999999999999999999 999999888888
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
++++..+.....+-.. +..+....+..-+..++..|.-...+..++...+|++ -|.
T Consensus 294 ~~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~ 349 (417)
T COG2223 294 MALAAALLSLFLTGFG-----------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGA 349 (417)
T ss_pred HHHHHHHHHccccccc-----------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhH
Confidence 8888888776532000 0022344444444455555666666777788888763 788
Q ss_pred hhhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHHHcCc
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFLLGTK 245 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~ 245 (558)
+.++.....++|+..-|...+...+..| +...|++...+.+++.+..+..+.
T Consensus 350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777 888888877777777665544333
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-08 Score=108.74 Aligned_cols=360 Identities=17% Similarity=0.146 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHhh---hhHHHHHHHhccccCCChH-HHHHHHHHH----HHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 42 IIGVEVAERFAYY---GISSNLITYLTGQLGESTA-TAAAAVNVW----SGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 42 ~~~~~~~~~~~~~---~~~~~l~~yl~~~~~~s~~-~~~~~~~~~----~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
+..+.+...+++. ........+....++.+.. +.+...... .+...+..++.|.++||+ |||..+....+.
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~ 101 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHH
Confidence 3333344444443 3335555666655554432 333333444 566778888899999999 999999999888
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHH--cccccccccccccccCCCCCChhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAI--GQGGHKPCTQAFGADQFDAQNPQERRAK 191 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gi--g~g~~~~~~~~~~~~~~~~~~~~~~~~r 191 (558)
..+..+...+.. +|.+. +.++ +.+.....+.++++|....++ |
T Consensus 102 ~~l~~~~~~~~~-------------------------~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~------R 146 (463)
T KOG2816|consen 102 TILPALCLLFQG-------------------------YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE------R 146 (463)
T ss_pred HHHhHHHHHHHH-------------------------HHHhh----hcccccchhhhhhhhhhheeeccchhH------H
Confidence 888877777642 22222 3333 234456777888999999887 9
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHh
Q 008632 192 SSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIK 271 (558)
Q Consensus 192 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (558)
...+++.+.....+..++|..++++....|...+|.++.+..+++.+......|+...++.++. .+..+
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~~~~~---------- 215 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-ATLRE---------- 215 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-ccccc----------
Confidence 9999999988999999999999999999999999999998877776665554444333322210 00000
Q ss_pred hccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHhhcccceeeeecc
Q 008632 272 TRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLR-LIPIWATCLVYAIVFAQYTTFFTKQGA 350 (558)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (558)
. ...........+ .++.... ...+|..+. .+..++....-+.-..-...++.....
T Consensus 216 ---~-------~~~~~~~~~~~~-----------~~~~~~~--~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f 272 (463)
T KOG2816|consen 216 ---L-------TPGSLDSSHVAD-----------AFQSLTK--VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKF 272 (463)
T ss_pred ---c-------CCCcccchhhhh-----------hhhhhcc--cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeec
Confidence 0 000000000000 0000000 011122221 111111111111100101111111111
Q ss_pred ccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 351 TMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLET 430 (558)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 430 (558)
..+..- +..-....+.......++..|+.... + +..+.+..|+..-.+..+++++.
T Consensus 273 ~w~~~~---~s~~~~~~~~~~~i~~l~~~~~l~~~---l-----------~~~~~i~lGl~~~~~~~~~~af~------- 328 (463)
T KOG2816|consen 273 GWNKKE---FSDLLSLVSILGIISQLLLLPLLSSI---L-----------GEKRLISLGLLSEFLQLLLFAFA------- 328 (463)
T ss_pred CcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---H-----------hhhhHhhHHHHHHHHHHHHHHHh-------
Confidence 111110 00000111222223333333333222 1 22236888999998998888886
Q ss_pred hhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 431 AKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 510 (558)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~ 510 (558)
...|......++ ........|...++.+....++.||+++++.+....++..+++.+-+.+...
T Consensus 329 ---------------~~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 329 ---------------TETWMMFAAGVV-VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred ---------------ccchhhhHHHHH-HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 233443433333 3333444566668899999999999999999999999999999999988765
Q ss_pred c
Q 008632 511 T 511 (558)
Q Consensus 511 ~ 511 (558)
+
T Consensus 393 t 393 (463)
T KOG2816|consen 393 T 393 (463)
T ss_pred H
Confidence 4
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6e-09 Score=106.20 Aligned_cols=127 Identities=15% Similarity=0.075 Sum_probs=85.1
Q ss_pred HHHHHHhccccCC---C----hHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 008632 58 SNLITYLTGQLGE---S----TATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIV-VASLIYILGLSMMTLLALITL 129 (558)
Q Consensus 58 ~~l~~yl~~~~~~---s----~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-~~~~~~~i~~~~~~~~~~~~~ 129 (558)
...|+|+++..+. + .+-.+...++..+..++..|+.|.++|.. |+||-.+ ....+..+..+.+++..+
T Consensus 36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~--- 111 (438)
T COG2270 36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP--- 111 (438)
T ss_pred ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC---
Confidence 4567777765544 2 23446667778888888899999999998 7665554 444566666666666532
Q ss_pred cccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhh
Q 008632 130 LSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANST 209 (558)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 209 (558)
..+++...+..++..++..+......+++.+..++++ -++..+.-+....+|+.+.
T Consensus 112 ------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~ 167 (438)
T COG2270 112 ------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVIL 167 (438)
T ss_pred ------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHH
Confidence 1236666677777888888888899999999998876 4444444333445555554
Q ss_pred hhh
Q 008632 210 ILV 212 (558)
Q Consensus 210 ~~~ 212 (558)
-+.
T Consensus 168 li~ 170 (438)
T COG2270 168 LIF 170 (438)
T ss_pred HHH
Confidence 433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-10 Score=120.24 Aligned_cols=178 Identities=15% Similarity=-0.001 Sum_probs=122.2
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHH-------
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTI------- 107 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~------- 107 (558)
+++.+|......++....++.+..++|.|+++++|++..+.++..+...+...++.+++|+++||+ ++|+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~ 337 (465)
T TIGR00894 259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK 337 (465)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence 446677777888888888889999999999999999999999999999999999999999999997 654321
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChh
Q 008632 108 -VVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ 186 (558)
Q Consensus 108 -~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 186 (558)
..+......+..+...... ..+....++...+.+.+.++..+.......|..|. .
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-- 393 (465)
T TIGR00894 338 IFNGIGGLGPGIFAYALPYL---------------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F-- 393 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHc---------------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H--
Confidence 1111111111111111110 01123333344444555454444444455566654 4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhhhhheecccc---cchhhhHHHHHHHHHHHHHHH
Q 008632 187 ERRAKSSFFNWWYFGISFGANSTILVVIYIQDNL---NWALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 187 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~ 241 (558)
+|...++.+...++|+.++|.+.|.+.+.. +|...|.+.++..+++.++..
T Consensus 394 ----~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 394 ----LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 899999999999999999999999987643 388888887777776655543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=122.78 Aligned_cols=177 Identities=13% Similarity=0.050 Sum_probs=119.0
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.+.++......++.....++...++|.|+++..|++..+.+++...+.+...++.+++|+++||+ |+++....+.+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~ 328 (438)
T TIGR00712 250 NKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMT 328 (438)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHH
Confidence 34566665555666666778889999999998999999999999999999999999999999998 76543333332222
Q ss_pred HHH---HHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 116 LGL---SMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 116 i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
+.. ........ .+.+...+..++.|.+..+..........|.+|++. |+
T Consensus 329 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g 380 (438)
T TIGR00712 329 LVTIAVIVYWMNPA----------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG 380 (438)
T ss_pred HHHHHHHHHHhcCC----------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------ee
Confidence 211 11111100 112223333344444332222222345678899887 99
Q ss_pred hhhhHHHHHHHHH-HHhhhhhhheecccccchhhhHHHHHHHHHHHHHHH
Q 008632 193 SFFNWWYFGISFG-ANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 193 ~~~~~~~~~~~~g-~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 241 (558)
++.++++...++| ..++|.+.|.+.++.||...|++.....+++.+..+
T Consensus 381 ~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 430 (438)
T TIGR00712 381 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 430 (438)
T ss_pred eehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 9999998887877 468999999999988999998876665554444433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.8e-10 Score=119.28 Aligned_cols=165 Identities=14% Similarity=0.107 Sum_probs=117.0
Q ss_pred hhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008632 55 GISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSD 134 (558)
Q Consensus 55 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 134 (558)
.+..+.+. +.+++|++..+.++......+...++.+++|+++||+ |||+.+..+.++..++.++..+......
T Consensus 302 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 374 (481)
T TIGR00879 302 AIMYYSPT-IFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV----- 374 (481)
T ss_pred ehHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-----
Confidence 34444444 4457899998888888889999999999999999998 9999999888877777777664321000
Q ss_pred ccCCCCCCCCCCC--chhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhh
Q 008632 135 CQNNNTAKSCSPH--HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILV 212 (558)
Q Consensus 135 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 212 (558)
++. ......+....++.+....+..+....+..|.+|++. |+++.++.+...++|..++|.+
T Consensus 375 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~ 438 (481)
T TIGR00879 375 ----------TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFL 438 (481)
T ss_pred ----------CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0012222222222222222334666777799999887 9999999999999999999999
Q ss_pred hheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 213 VIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 213 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
.+.+.++.+|++.|++.+++.+++.+..+.
T Consensus 439 ~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 439 FPTMLESIGVGGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred HHHHHHhcCccceehhHHHHHHHHHHHHhe
Confidence 999988889999998877766655555443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-10 Score=118.43 Aligned_cols=183 Identities=18% Similarity=0.138 Sum_probs=148.5
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchh--HHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRF--RTIVVASL 112 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~~~~~~~ 112 (558)
+.|.+..-++..++-+-+..++......|.++++|++..+...+.....+.+.++.++.|++.||+ |.| ++++.+.+
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 445666555666666677788889999999999999999999999999999999999999999999 999 88888877
Q ss_pred HHHHHHHHHHH--HHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhh
Q 008632 113 IYILGLSMMTL--LALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRA 190 (558)
Q Consensus 113 ~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~ 190 (558)
+..+..+...+ ..+ .+ +-.+.+.+++.-++.|+..|...+..-++.+|+.|+++
T Consensus 358 ~~~~i~~~g~~G~~~~--~~----------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------ 413 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPS--FF----------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------ 413 (477)
T ss_pred HHHHHHHHHHHHhhhc--cc----------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------
Confidence 66443333332 111 00 01336778888889999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHHH
Q 008632 191 KSSFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 191 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~ 242 (558)
.+..+|++....-..+.+||++.|.+.+..| .|..+....++.+++++++.+
T Consensus 414 e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 414 EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999887 788888777777777766654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=115.01 Aligned_cols=168 Identities=8% Similarity=-0.033 Sum_probs=128.9
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.|.++......++....+......++.|++ +.|.+..+.+.+.+...+...+...+.|++.||+ |+|+.+..+.+...
T Consensus 204 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~ 281 (382)
T PRK11128 204 EPTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGV 281 (382)
T ss_pred ChhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHH
Confidence 355555555555555556666777888886 5899999999999988888889999999999998 99999999988888
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++.++....++ .+.+++..++.|++.+...+....+..+. ++++ +++..
T Consensus 282 ~~~~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~ 330 (382)
T PRK11128 282 VRWGLMGSTTA------------------------LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQ 330 (382)
T ss_pred HHHHHHHhhhh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHH
Confidence 88777766544 67778889999999888878777777775 4444 67788
Q ss_pred hHHH-HHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHH
Q 008632 196 NWWY-FGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAAL 237 (558)
Q Consensus 196 ~~~~-~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 237 (558)
+.++ ....+|..+||.++|.+.+..|+. .|+..+++.++++
T Consensus 331 ~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 331 ALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 8765 445678899999999999988874 5555554444443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=118.80 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=127.2
Q ss_pred cchhhHHHHHHHHHHHHhhhhH-HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGIS-SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
.|.++......++....+.... ...|.|.++.+|.+..+.+++.....++..++.++.|++.||+ |||+.+..+.++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 287 (365)
T TIGR00900 209 NPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVI 287 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHH
Confidence 3445555555555555555555 6778888877999999999999999999999999999999998 9999998887777
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++..+..+..+ +.+.+++..++.|++.+...+...+++.|.+|+++ |+++
T Consensus 288 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 338 (365)
T TIGR00900 288 GLAILVVGLTPP-----------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRV 338 (365)
T ss_pred HHHHHHHHhhch-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence 666666555421 25667778888999999998999999999999877 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheeccccc
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLN 221 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g 221 (558)
.++++...++|..++|.++|.+.++.|
T Consensus 339 ~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 339 FGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999887643
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=110.96 Aligned_cols=180 Identities=17% Similarity=0.111 Sum_probs=140.6
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
+.+.++.....+++...+.|...+++-+++++..|+|....+++...|.++..++.+++|+++|| +.|+.+....++.
T Consensus 209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~ 286 (394)
T COG2814 209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLL 286 (394)
T ss_pred cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHH
Confidence 34567777777788888888889999999999999999999999999999999999999999999 7788877777776
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
++....+.+..+ +.+...+..++.|++.+......+.-.++..| +. ++.+
T Consensus 287 a~~~l~l~~~~~-----------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~------~~~a 336 (394)
T COG2814 287 ALALLALTFTGA-----------------------SPALALALLFLWGFAFSPALQGLQTRLARLAP-DA------ADLA 336 (394)
T ss_pred HHHHHHHHHhcc-----------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-Cc------hHHH
Confidence 666666555432 23445555555566555544444444455333 33 8899
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcc
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKT 246 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 246 (558)
.+++....|+|..+|..++|.+.+++|+....+..+++.+++.+..+...++
T Consensus 337 ~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 337 GSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998888877776654443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=117.84 Aligned_cols=171 Identities=14% Similarity=0.104 Sum_probs=123.8
Q ss_pred HHHHHHhhhhHHHHHHHhccccCCChHHHHHHHH-HHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 008632 47 VAERFAYYGISSNLITYLTGQLGESTATAAAAVN-VWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLA 125 (558)
Q Consensus 47 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~ 125 (558)
++.....+....+.++|+.+++|++..+.+++.. ...++..++.+++|+++||+ |||+.+..+.++.++..+......
T Consensus 232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~ 310 (491)
T PRK11010 232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLS 310 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555677888888889999999999875 55678889999999999999 999988776665555443332211
Q ss_pred HhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHH
Q 008632 126 LITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFG 205 (558)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 205 (558)
. . ..+.+.+.+..+++.++.|...+...++..+..+++. +++.+++.+...++|
T Consensus 311 ~-~-------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg 364 (491)
T PRK11010 311 I-T-------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVG 364 (491)
T ss_pred h-c-------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHH
Confidence 1 0 0113334444555555555555666788888888887 888899999999999
Q ss_pred HHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcC
Q 008632 206 ANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGT 244 (558)
Q Consensus 206 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 244 (558)
..+++.+.|.+.+..||+..|.+.+++.+++.+.....+
T Consensus 365 ~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 365 RVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888999999999999999888877777665554443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-09 Score=111.97 Aligned_cols=169 Identities=12% Similarity=-0.149 Sum_probs=123.9
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
|.++.......+....++......|.|+++++|.++.+.++......++..++.++.|+++||+ |||+.+..+.++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~ 293 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVA 293 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3444444444444444555666678888888999999999888777788889999999999998 999999998888888
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+..+........ ..+.+.++++.++.|+|.+...+......... ++++ |++..+
T Consensus 294 g~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~ 347 (406)
T PRK15402 294 GLLLAALATVIS-------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSA 347 (406)
T ss_pred HHHHHHHHHHcc-------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHH
Confidence 877776643200 02255567778888888887766655544333 3355 999999
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAF 232 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~ 232 (558)
.+++...+|..+|+.+.+.+.+..++........+.
T Consensus 348 ~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~ 383 (406)
T PRK15402 348 AMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLAN 383 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHH
Confidence 999999999999999999998877765544444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.4e-10 Score=117.06 Aligned_cols=170 Identities=9% Similarity=0.079 Sum_probs=124.6
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhcccc---CCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQL---GESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
|.++......++....+.....+.+.|+++.+ +.+....+.+.+...+...++.+..|++.||+ |||+.+..+.++
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l 293 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTI 293 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence 33444443334444444445556778877655 55666778888888888888999999999999 999999998888
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
.+++..+.....+ .+.+++.+++.|++..........+..+..+++. +++
T Consensus 294 ~~l~~~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at 343 (396)
T TIGR00882 294 MSVRIIGSSFATT------------------------ALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SAT 343 (396)
T ss_pred HHHHHHHHHhcCC------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEE
Confidence 8887766555433 6666777888888866555555556666777665 777
Q ss_pred hhhH-HHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHH
Q 008632 194 FFNW-WYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAAL 237 (558)
Q Consensus 194 ~~~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 237 (558)
..+. ++....+|..+++.++|++.+..||+.+|.+.+++.++..
T Consensus 344 ~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 344 IYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFT 388 (396)
T ss_pred eehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 6666 6678899999999999999998999999988776655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=118.03 Aligned_cols=158 Identities=15% Similarity=0.049 Sum_probs=122.9
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
|.+...+...++....+.......|.|++..+|.+..+.+++.....++..++.++.|+++||+ |||+++..+.++..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4455555555666666555556778888888999999999998888888888889999999999 999999988887777
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+..+..+... ....+.+.+..++.|++.+...+.......+..|++. ++.+.+
T Consensus 340 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~ 392 (471)
T PRK10504 340 VSLLFMLVAL---------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNS 392 (471)
T ss_pred HHHHHHhccc---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHH
Confidence 7666554321 0113334455667788888888888888899999877 999999
Q ss_pred HHHHHHHHHHHhhhhhhheecccccc
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNW 222 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~ 222 (558)
++++...+|..+|+.++|.+.+..|+
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999887665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=115.33 Aligned_cols=165 Identities=8% Similarity=-0.006 Sum_probs=115.2
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhcc-ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHH-HHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTG-QLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTI-VVASLIY 114 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~-~~~~~~~ 114 (558)
+.++......++....++++..++|.|+++ ..+.+..+.++......++..++.++.|+++||+ +||+.. ....++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence 345556666677777888999999999987 3578888999999999999999999999999998 877753 3333333
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++..+. .... . ....+.+..+.++|.....+.......|.+|+++ |+++
T Consensus 321 ~~~~~~~-~~~~----------------------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a 370 (412)
T TIGR02332 321 AAGWLLA-SATD----------------------H-NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIA 370 (412)
T ss_pred HHHHHHH-HhcC----------------------C-HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHH
Confidence 3332221 1111 0 1111122222333333333344455567788777 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAF 232 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~ 232 (558)
+++.+...++|..++|.+.|.+.+..| |++.|++.+++
T Consensus 371 ~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 371 IAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999999998775 99888766644
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.8e-08 Score=103.91 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=113.9
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhh--cc--hhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008632 59 NLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSF--LG--RFRTIVVASLIYILGLSMMTLLALITLLSSSD 134 (558)
Q Consensus 59 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 134 (558)
....|+++++|+++.+...+.+...+...+=++ .|.++|.+ .| ||+-++++.++..++...+...+.
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~-~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~-------- 81 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPL-YGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA-------- 81 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhh-HHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc--------
Confidence 345678999999999999887777776666555 69999975 23 555666666666555555544321
Q ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 008632 135 CQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI 214 (558)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 214 (558)
.........+..++..+|.+....+.-+.+.|....+... |+...+..+....+|++++..++|
T Consensus 82 ------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 82 ------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred ------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0012344555667778888888888899999998766422 788888888889999999999999
Q ss_pred eecccccchhhhHHHHHHHHHHHHH
Q 008632 215 YIQDNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 215 ~l~~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
.+.+..+++..|.+.+.+.++..+.
T Consensus 146 ~l~~~~~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 146 PLLDSFGPQGVFLISAALPLLMLIV 170 (433)
T ss_pred hhhhcCCCeEEehHHHHHHHHHHHH
Confidence 9999999999998877665544433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.5e-10 Score=115.20 Aligned_cols=146 Identities=15% Similarity=0.076 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGL 118 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~ 118 (558)
.+.+....++....++....++| ++.+++|.+..+.+++.+...++..++.++.|+++||+ |||+......+......
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 329 (398)
T TIGR00895 252 TVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAV 329 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHH
Confidence 33344444555566666777777 66668899999999999999999999999999999998 99955544433333333
Q ss_pred HHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHH
Q 008632 119 SMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWW 198 (558)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 198 (558)
.+..... +.+..++..++.|++.+...+...+++.|.+|+++ |+++.++.
T Consensus 330 ~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 379 (398)
T TIGR00895 330 LVGSTLF------------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWA 379 (398)
T ss_pred HHHHHhh------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHH
Confidence 3222121 24556677788899999988999999999999887 99999999
Q ss_pred HHHHHHHHHhhhhhhhee
Q 008632 199 YFGISFGANSTILVVIYI 216 (558)
Q Consensus 199 ~~~~~~g~~~~~~~~~~l 216 (558)
+....+|..++|.++|++
T Consensus 380 ~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 380 IGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHhHHhc
Confidence 999999999999999875
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-09 Score=109.14 Aligned_cols=162 Identities=14% Similarity=0.053 Sum_probs=119.9
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhcc--ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTG--QLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
+.++......++-...--++..+++.|+++ .+|++..+.++..+.+..+..++.+++++++||+ |+||++..+.++.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 344444333333322334567889999975 4799999999999999999999999999999998 9999988888777
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
+++.++....+. .. ...+.++.|++.+...|...+...+.+|++. +++
T Consensus 219 ~~~~~l~~~~~~------------------------~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~a 266 (310)
T TIGR01272 219 VLLSIGAALTHG------------------------YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQG 266 (310)
T ss_pred HHHHHHHHHcCC------------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhh
Confidence 777655544321 21 2234557899999999999999988888643 333
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAF 232 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~ 232 (558)
.++. ....+|+.+.|.+.|.+.+..|.+..|++..++
T Consensus 267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4444 455699999999999999988988888755544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=115.09 Aligned_cols=173 Identities=12% Similarity=-0.011 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhH-----HHH--HHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFR-----TIV--VAS 111 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-----~~~--~~~ 111 (558)
.|.+....++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+ ... ...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 34444444444444556677889999989999999999999999999999999999999998 8762 222 122
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhh
Q 008632 112 LIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191 (558)
Q Consensus 112 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 191 (558)
++..+...+....+ +.+...+..++.+++.+...+...++..+..| +. |
T Consensus 333 ~l~~i~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~ 381 (476)
T PLN00028 333 TLGGVFCIWLGRAN------------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------L 381 (476)
T ss_pred HHHHHHHHHhcccc------------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------c
Confidence 22222222222211 13333444445555544444455555566554 34 8
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcC
Q 008632 192 SSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGT 244 (558)
Q Consensus 192 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 244 (558)
+...++.+.+.++|+.+++.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus 382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 382 GVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 99999988777888888877655 22334699999888877777666655543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=111.74 Aligned_cols=174 Identities=14% Similarity=-0.028 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHH-HHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSG-TASLLPLLGAFLADSFLGRFRTIVVASLIYILG 117 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~ 117 (558)
++......++..........+.+.|+++ .|++..+.+++...... ...++.+++|++.||+ |+|+.+..+.++..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 3434444444444455555677888875 79999999998887764 5556788999999999 9999998877665443
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCC-CChhhhhhhhhhhh
Q 008632 118 LSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDA-QNPQERRAKSSFFN 196 (558)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~ 196 (558)
......... ... .......+....+.+++.|...+...+...+..++ +. +++.++
T Consensus 288 ~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~ 343 (390)
T TIGR02718 288 ALLWFAQAA-FWL-----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVT 343 (390)
T ss_pred HHHHHHHHH-ccc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHH
Confidence 332221111 000 01123334444555666666666677776677665 55 899999
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALV 238 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 238 (558)
+.+...++|..++|.++|.+.+..|++..|.+.+++.+++..
T Consensus 344 ~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 344 AVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999877766555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-09 Score=112.46 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=106.2
Q ss_pred HhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008632 52 AYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLS 131 (558)
Q Consensus 52 ~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 131 (558)
..+.+..++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..++..+......
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ----- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 334566788888875 599999999998999999999999999999998 9999998887776665544433211
Q ss_pred cccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhh
Q 008632 132 SSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTIL 211 (558)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 211 (558)
.....+.+..+..+.+..+..+..+.++.|.+|++. |++++++.+...++|+.++|.
T Consensus 319 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~ 375 (426)
T PRK12307 319 -----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSM 375 (426)
T ss_pred -----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHH
Confidence 112212222222222333334556778899999887 999999999899999999999
Q ss_pred hhheecccccchhh
Q 008632 212 VVIYIQDNLNWALG 225 (558)
Q Consensus 212 ~~~~l~~~~g~~~~ 225 (558)
+.|++.+..|+...
T Consensus 376 ~~g~l~~~~g~~~~ 389 (426)
T PRK12307 376 AATWLGITMGLGAA 389 (426)
T ss_pred HHHHHHHcccHHHH
Confidence 99999998886543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=115.09 Aligned_cols=163 Identities=17% Similarity=0.103 Sum_probs=121.7
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.|.++......++...+++......+.|.+..++ +..+.+.+.....+...++.++.|+++||+ |||+++..+.++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~ 298 (437)
T TIGR00792 221 NDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMV 298 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 3555656666666666666555556666666666 555667777778888999999999999999 99999999988888
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCCh-hhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNP-QERRAKSSF 194 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~ 194 (558)
++.++..+..+ +.+.+++..++.+++.+...+...++++|..|.++. ..++.+|.+
T Consensus 299 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 355 (437)
T TIGR00792 299 LGYLIFFFAGS-----------------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLV 355 (437)
T ss_pred HHHHHHHHcch-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHH
Confidence 87776655321 245566677788899988888899999998774321 111227899
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccch
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWA 223 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 223 (558)
++++++...+|..+++.+.|.+.+..||.
T Consensus 356 ~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 356 YSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999887766653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=101.57 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=129.0
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
...+.+|.+.+..++-..+.+=+...-+.+.++.+|+|+.+++.+.+..........++.|.++||+ ||+-..+.+..+
T Consensus 261 ~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~ 339 (459)
T KOG4686|consen 261 TFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACI 339 (459)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHH
Confidence 3456677776665555444444555567788999999999999999999999999999999999999 999877766544
Q ss_pred -HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 114 -YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 114 -~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
...+..++.+. .+.-+++..+.|+.........+..++...|+++ .|
T Consensus 340 ~tl~~H~~l~Ft--------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LG 387 (459)
T KOG4686|consen 340 LTLLGHSGLFFT--------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LG 387 (459)
T ss_pred HHHHHhhhHHhh--------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hc
Confidence 44444555443 3445667777888877776667888999999998 99
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheeccccc---chhhhHHHHHHHH
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNLN---WALGFGIPCAFMV 234 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g---~~~~f~~~~~~~~ 234 (558)
++++..+...|+|-.+-|++.|.+.++-| |--.|.+....+.
T Consensus 388 Taygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~a 432 (459)
T KOG4686|consen 388 TAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMA 432 (459)
T ss_pred chHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999998765 4445555544433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=116.68 Aligned_cols=173 Identities=13% Similarity=0.098 Sum_probs=143.4
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+.+..++...++.++....+...+|.+.++.+|.++...|++.+.+.++..++.++.+++.+|+ ++++.+..+.++.++
T Consensus 218 ~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~ 296 (524)
T PF05977_consen 218 PPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFAL 296 (524)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHH
Confidence 4444444444444444444556688899999999999999999999999999999999999998 999999999888888
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+.+.+++.++ .+..++..++.|++.........+.+-+..|++. |||+++
T Consensus 297 ~~~~lal~~~------------------------~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~s 346 (524)
T PF05977_consen 297 ALLLLALSPS------------------------FWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFS 346 (524)
T ss_pred HHHHHhcchH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHH
Confidence 8888887755 7777888888999998888888888899999988 999999
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
++++....+..+|.++.|.+.+.+|-+..+.++++..+++.++.
T Consensus 347 i~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 347 IYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888887776655554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.5e-09 Score=108.36 Aligned_cols=164 Identities=12% Similarity=0.099 Sum_probs=117.5
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+.++.......+....++....+.|.|+++++|.++.+.+++.....+...++.++.|++.||+ |||+.+..+.++..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~ 284 (385)
T TIGR00710 206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAV 284 (385)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3344444444444555666677788888889999999999999999999999999999999998 999999888887777
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+..++....... ......+....++.|++.+...+.......|..| ++ |+++.+
T Consensus 285 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~ 338 (385)
T TIGR00710 285 SAVLLEITAILG-------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASA 338 (385)
T ss_pred HHHHHHHHHHhc-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHH
Confidence 777666543200 0123445555677888888888888888888876 45 899999
Q ss_pred HHHHHHHH-HHHhhhhhhheecccccchhhhHH
Q 008632 197 WWYFGISF-GANSTILVVIYIQDNLNWALGFGI 228 (558)
Q Consensus 197 ~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~f~~ 228 (558)
+.+..... |+..+++ .+.+.+..+|...+..
T Consensus 339 ~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 339 LFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHH-HHhccccChHHHHHHH
Confidence 88777654 5555665 4455554455544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=116.01 Aligned_cols=155 Identities=9% Similarity=-0.044 Sum_probs=128.7
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.|.+.......++....+++...++|.|+++.+|.++.+.++....+.+...++.++.|++.||+ |||+.+..+.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~ 336 (495)
T PRK14995 258 HRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSA 336 (495)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHH
Confidence 35555566666677777788888999999999999999999999999999999999999999999 99999988888888
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++..++..... ..+.+..+...++.|+|.|...+.......+..|+++ ++.+.
T Consensus 337 ~~~~~l~~~~~---------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~ 389 (495)
T PRK14995 337 LSFYGLAMTDF---------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAG 389 (495)
T ss_pred HHHHHHHHhcC---------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHH
Confidence 77766654321 0124445667888999999988888888888889887 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecc
Q 008632 196 NWWYFGISFGANSTILVVIYIQD 218 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~ 218 (558)
+++++..++|..+|+.+.+.+.+
T Consensus 390 ~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 390 AIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887754
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.7e-09 Score=109.35 Aligned_cols=169 Identities=12% Similarity=0.043 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGL 118 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~ 118 (558)
.+......++.....+....++++|+++.+|.+..+.+++.+...++..++.++.|+++||+ |+|+.+..+.++.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 33333333344444445556677888888999999999999999999999999999999998 99999988888777777
Q ss_pred HHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHccccccccccccc-ccCCCCCChhhhhhhhhhhhH
Q 008632 119 SMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFG-ADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~ 197 (558)
++.....+ +.+...+..++.++|.++..+...... .+..+++. ++.+.
T Consensus 280 ~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~-- 328 (382)
T PRK10091 280 LMLFFFGG-----------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAAG-- 328 (382)
T ss_pred HHHHHHHh-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHHH--
Confidence 65543322 123344444455555444333333333 33333333 44433
Q ss_pred HHHHHHHHHHhhhhhhheeccc-ccchhhhHHHHHHHHHHHHH
Q 008632 198 WYFGISFGANSTILVVIYIQDN-LNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 198 ~~~~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~ 239 (558)
.+...++|..+||.++|.+.+. .+|+..+.+.++..+++...
T Consensus 329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 3556789999999999998885 57998888776665544333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.9e-09 Score=110.01 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=104.6
Q ss_pred HHHHHhccccCCChHHHHHHHHHHH-HHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 008632 59 NLITYLTGQLGESTATAAAAVNVWS-GTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQN 137 (558)
Q Consensus 59 ~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (558)
..+.|+.+++|++..+.+++..... ....++.+++|++.||+ |||+.+..+.++..+..+........+
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~--------- 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP--------- 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 3455677789999999999876654 45788899999999999 999988777766555544332211100
Q ss_pred CCCCCCCCCCchhHHHHHHHH----HHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhh
Q 008632 138 NNTAKSCSPHHFQIIVFIFSL----YLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV 213 (558)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~----~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 213 (558)
.+.+.+.+.. +..+++.+...+....++.+.+|.+. + ++++...++|..++..++
T Consensus 301 -----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~~~~~ 359 (402)
T PRK11902 301 -----------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYVGPTS 359 (402)
T ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHHHHHH
Confidence 1133344333 34556666666777777777777543 3 444445567776666689
Q ss_pred heecccccchhhhHHHHHHHHHHHHHHHHc
Q 008632 214 IYIQDNLNWALGFGIPCAFMVAALVLFLLG 243 (558)
Q Consensus 214 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 243 (558)
|.+.+..||+..|.+.+++.+++.+.....
T Consensus 360 G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 360 GYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887777665555443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.5e-09 Score=106.73 Aligned_cols=153 Identities=17% Similarity=0.081 Sum_probs=115.3
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+..+.......+....++....++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+-+||+.+..+.++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 444545545555666777888899999975 7999999999999999999999999999999983355666777777777
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCC-CChhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDA-QNPQERRAKSSFF 195 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~ 195 (558)
+...+.+..+ .... ...++.|++.|...+...+.+.+..++ ++ ++...
T Consensus 276 ~~~~~~~~~~------------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------~g~~~ 324 (355)
T TIGR00896 276 GLCGLLFAPM------------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ------AAALS 324 (355)
T ss_pred HHHHHHHhhh------------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH------HHHHH
Confidence 7766655432 1111 134667899988888777776665543 33 78888
Q ss_pred hHHHHHHHHHHHhhhhhhheeccccc
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLN 221 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g 221 (558)
++.+...++|..++|.+.|.+.++.|
T Consensus 325 ~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 325 AMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888999999999999988776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=115.13 Aligned_cols=156 Identities=13% Similarity=0.126 Sum_probs=126.6
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
|.++......++..+.+++....+|.|+++.+|.++.+.++......++..++.++.|++.||+ |||+.+..+.++.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 4455556666667777788888999999999999999999999999999999999999999998 999999988888888
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+..++.+... + ..+.+.+....++.|+|.+...+.......+..|+++ |+++.+
T Consensus 334 ~~~~~~~~~~-------------------~-~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~ 387 (485)
T TIGR00711 334 GFYWRAFTFT-------------------P-DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSS 387 (485)
T ss_pred HHHHHhccCC-------------------C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHH
Confidence 7776653211 0 0224556666788899988877777777778888777 999999
Q ss_pred HHHHHHHHHHHhhhhhhheeccc
Q 008632 197 WWYFGISFGANSTILVVIYIQDN 219 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~ 219 (558)
+++...++|+.+|+.+.+.+.++
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.4e-09 Score=109.54 Aligned_cols=173 Identities=16% Similarity=0.081 Sum_probs=126.3
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhc--cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLT--GQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
|.++......++..+.+.....+.+.|+. ++.+.+....+++............++.|++.||+ ++|+.+..+.++.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence 44444444445444444444455566654 34566667778787887777777788889999998 9999999898888
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++.....+..+ +.+.+.+...+.++|.+...|...+.+.+..|++. |+++
T Consensus 285 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~ 335 (395)
T PRK10054 285 VIGLVGFIFSGN-----------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASY 335 (395)
T ss_pred HHHHHHHHHcch-----------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceeh
Confidence 888776655321 25556677888899988888888888999999887 8998
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
++..+ ...+|..+||.++|.+.++.|....|.+.+++..++.+..
T Consensus 336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 88765 5568999999999999999888877776655544444433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=109.41 Aligned_cols=155 Identities=13% Similarity=0.074 Sum_probs=109.3
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 008632 58 SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQN 137 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (558)
.+.|.+ .++.|.+.....+......+...++.+++|+++||+ |||+.++.+.++.+++.+++.......
T Consensus 292 ~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~--------- 360 (479)
T PRK10077 292 YYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ--------- 360 (479)
T ss_pred HHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC---------
Confidence 344444 456888887777777777888889999999999999 999999999998888887776542200
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHcccc-cccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhh--
Q 008632 138 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGG-HKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI-- 214 (558)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-- 214 (558)
..........++.+.+.+. ..+....+++|.+|.++ |++++++.+...++|..+++.+.+
T Consensus 361 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 361 -----------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred -----------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0011222333444444443 34677899999999888 999999998888888887755544
Q ss_pred ----eecccccchhhhHHHHHHHHHHHHHH
Q 008632 215 ----YIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 215 ----~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
++.+..+|+..|++.+...+++.+..
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
T PRK10077 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFM 453 (479)
T ss_pred HhccchhhhccCccHHHHHHHHHHHHHHHH
Confidence 44567788888887766555554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-09 Score=113.82 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=106.1
Q ss_pred HHHHHHHHhhhhHHHHHHHhccccCCChHHHHH------------HHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHH
Q 008632 45 VEVAERFAYYGISSNLITYLTGQLGESTATAAA------------AVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASL 112 (558)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~ 112 (558)
..+...+.+|+...+.|.+++ +.|++..+.+. ......++..++.++.++++||+ |||++++.+.+
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~ 373 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF 373 (502)
T ss_pred HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence 334455677888888888885 56776432111 12223334556778889999999 99999988887
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 113 IYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
+.+++..+..+..... .....+....+...++..+..+....+.+|.+|.+. |+
T Consensus 374 ~~~~~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~ 427 (502)
T TIGR00887 374 ILTVLFFVLGFAYNHL--------------------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RS 427 (502)
T ss_pred HHHHHHHHHHHHHHhc--------------------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HH
Confidence 7777766665542100 001111111111222222334566677899999998 99
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheeccc----------ccchhhhHHHHHHHHHHHH
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDN----------LNWALGFGIPCAFMVAALV 238 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~----------~g~~~~f~~~~~~~~~~~~ 238 (558)
++.++.+....+|+.++|.+.+++.+. .++...|++.++..+++.+
T Consensus 428 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 428 TAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999988763 2344556655555444433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-07 Score=95.03 Aligned_cols=154 Identities=19% Similarity=0.154 Sum_probs=105.9
Q ss_pred hccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCC
Q 008632 64 LTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKS 143 (558)
Q Consensus 64 l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (558)
+.+++|++..+++.+.........+..++.|.++||+ |||+.-+...+++++..+.--.
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~-------------------- 118 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS-------------------- 118 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc--------------------
Confidence 3367999999999999999999999999999999999 9999988887777776653222
Q ss_pred CCCCchhHHHHHHHHHHHHHccccccccccccc-ccCCCCCChhhhhhhhhhhhHHH-HHHHHHHHhhhhhhheeccccc
Q 008632 144 CSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFG-ADQFDAQNPQERRAKSSFFNWWY-FGISFGANSTILVVIYIQDNLN 221 (558)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~g 221 (558)
.+...++++|++.|++......+-.+.. .|....+-|+| ..+.-++... ..+.+-++.+-+++-.+.+..+
T Consensus 119 -----~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~ 191 (354)
T PF05631_consen 119 -----SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFG 191 (354)
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence 3488999999999999998877766655 44322222211 2344444333 2223334444445555555554
Q ss_pred c--hhhhHHHHHHHHHHHHHHHHcCc
Q 008632 222 W--ALGFGIPCAFMVAALVLFLLGTK 245 (558)
Q Consensus 222 ~--~~~f~~~~~~~~~~~~~~~~~~~ 245 (558)
. ..+|..+.++.+++.+.+...++
T Consensus 192 ~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 192 FGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhccc
Confidence 3 67888888777777766655444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=108.79 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHh-ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYL-TGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILG 117 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~ 117 (558)
++......++.....++...+.+.|+ ++.+|+++.+.++....+.++..++.+++|++.||+ |||+++..+.++..++
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 33333334444455555666778885 567899999999999999999999999999999998 9999998887776655
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH
Q 008632 118 LSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (558)
..+..+... .. ......+.|++.+...|...+...|.+|++ .+.+.++
T Consensus 339 ~~~~~~~~~------------------------~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l 386 (438)
T PRK10133 339 CLISAFAGG------------------------HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF 386 (438)
T ss_pred HHHHHHcCC------------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhH
Confidence 544433211 11 234566789999999999999999998753 3445555
Q ss_pred HHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHH
Q 008632 198 WYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAA 236 (558)
Q Consensus 198 ~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~ 236 (558)
..+ ..+|+.++|.+.|.+.+..| -+..|++..++.+..
T Consensus 387 ~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 387 IVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 543 34688888889999988887 788887666554433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=106.54 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=112.2
Q ss_pred hHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008632 56 ISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDC 135 (558)
Q Consensus 56 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 135 (558)
....+|.|+++..+ ++.+.+++.+...+....+..+.+++.||.++.++.+..+.++..++..++...++
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 296 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN--------- 296 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh---------
Confidence 44567888887655 66788888777776666555555666664327677777777777777776665543
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhe
Q 008632 136 QNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIY 215 (558)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 215 (558)
.+.+.+..++.++|.+...|...+++.|..|+++ |++++++++...++|..+||.++|.
T Consensus 297 ---------------~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 297 ---------------LQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHH
Confidence 4555666677888888888888999999999988 9999999999999999999999999
Q ss_pred ecccc---c-chhhhHHHHHHHHHHHHHH
Q 008632 216 IQDNL---N-WALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 216 l~~~~---g-~~~~f~~~~~~~~~~~~~~ 240 (558)
+.+.. + ....+.+...+.++..+..
T Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (400)
T PRK11646 356 LFDLGKALNQPELPWMMLGIIGLITLLAL 384 (400)
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence 98764 2 2455555454444444443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-08 Score=103.90 Aligned_cols=167 Identities=7% Similarity=-0.074 Sum_probs=118.4
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
|.++......++.....++...++++++.+++|++..+.+++...+.++..++.++.|++.||. +|+..+....+....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~ 294 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVS 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 3444444433444444555556654444567899999999999999999999999999999996 655544433333333
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+.++....++ .+.+.+..++.|++.+...+..++.+.+..|+ + +++..+
T Consensus 295 ~~~l~~~~~~------------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~ 343 (394)
T PRK10213 295 ALVLTLWGSD------------------------KIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGS 343 (394)
T ss_pred HHHHHHHhhh------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHH
Confidence 3333333322 55666778888999988888888888888874 3 556667
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVA 235 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 235 (558)
++....++|..+|+.++|.+.+..|++..+...+++.++
T Consensus 344 ~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 344 IQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 777777899999999999999988988888776655433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-08 Score=105.73 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=131.8
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
+.|.+..+....++..++........+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |+|+++..+.++.
T Consensus 223 ~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~ 300 (428)
T PF13347_consen 223 RNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLA 300 (428)
T ss_pred ccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHH
Confidence 3456666677777777777666777788888888877 4556777788888999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChh-hhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ-ERRAKSS 193 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~ 193 (558)
+++.++..+... .+.+.+++..++.|++.+.......++++|..+.++.+ .++..|.
T Consensus 301 ~~~~~~~~~~~~----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~ 358 (428)
T PF13347_consen 301 ALGFLLLFFLGP----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGM 358 (428)
T ss_pred HHHHHHHHHHHh----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHH
Confidence 999998888752 23788889999999999999999999999999864321 1233688
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccc
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNW 222 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 222 (558)
.++.+++...+|..+++.+.+.+.+..|+
T Consensus 359 ~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 359 YFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 88899999999999999988877554443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.3e-09 Score=104.82 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=140.9
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+.+..-....++-+=+.-++......|-+.++|++..+..++...-++.+.++.++.|+|.||+ |-|++++.++++..+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence 3454444445555555556778888899999999999999999999999999999999999999 999999999988877
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
..+...+... ...+++.-++.|...|+..+.+-++.++.+|+++ -++++|
T Consensus 331 ~~~~~~~~~~------------------------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFg 380 (438)
T COG2270 331 AALYLIFLEG------------------------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFG 380 (438)
T ss_pred HHHHHHHccc------------------------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceee
Confidence 7776665532 3345556677899999999999999999999998 899999
Q ss_pred HHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~ 241 (558)
+|+...-.+..+||.+.+.+.+..| -|..+....++..+++++++
T Consensus 381 lyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 381 LYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 9999999999999999999988766 56666655555555555543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=105.84 Aligned_cols=186 Identities=11% Similarity=0.011 Sum_probs=122.3
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.+..|.+.+..++...++.++..++|.|+++.+. ............+...+..+++|+|+||+ |+||++..+.+...
T Consensus 251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~ 327 (462)
T PRK15034 251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMA 327 (462)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHH
Confidence 3456767766666655666677789999988663 33333334445677889999999999999 99999999888777
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCC----------C-
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQ----------N- 184 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~----------~- 184 (558)
++......... . ....+.+.+.+..+...++.|...+.+..++.+.+|++ +
T Consensus 328 i~~~~~~l~lp--~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~ 389 (462)
T PRK15034 328 IFSALLFLTLP--G----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSD 389 (462)
T ss_pred HHHHHHHHHhc--c----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccch
Confidence 76654433211 0 00123555655555555666666677777777777641 0
Q ss_pred ----hhhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHHH
Q 008632 185 ----PQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 185 ----~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~ 242 (558)
...+++-|.+.|+......+|+.+-|.+.|...+..| +...|+...+..+++.++-+.
T Consensus 390 ~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 390 EQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0111236677888888888989999988777766554 777777766665655555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.3e-09 Score=107.73 Aligned_cols=144 Identities=13% Similarity=0.092 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHH-HHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWS-GTASLLPLLGAFLADSFLGRFRTIVVASLIYILG 117 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~ 117 (558)
++......++....++.....++.|+++ +|++..+.+.+.+... +...++.+++|+++||+ |||+.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 5555555666677888888999999987 8999999998887766 56778999999999999 9999998888877776
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH
Q 008632 118 LSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (558)
..+..+..+... +.| ++ -.+.+.+....++.+++.+...+...++..|.+|++. |++.+++
T Consensus 289 ~~~~~~~~~~~~-------~~~-~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 349 (356)
T TIGR00901 289 NAGFVWLASNGH-------HDG-IT-----FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMAL 349 (356)
T ss_pred HHHHHHHHhcCc-------ccc-cc-----cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHH
Confidence 665544321000 000 00 0124667777888899999999999999999999999 9999999
Q ss_pred HHHHHH
Q 008632 198 WYFGIS 203 (558)
Q Consensus 198 ~~~~~~ 203 (558)
++...+
T Consensus 350 ~~~~~~ 355 (356)
T TIGR00901 350 LSSLSA 355 (356)
T ss_pred HHHHHh
Confidence 887655
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=108.67 Aligned_cols=165 Identities=13% Similarity=0.131 Sum_probs=123.1
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
+.|.++......++....++......+.|+++.+|.+....++......+...++.++.++++||+ |+|+++..+.++.
T Consensus 226 ~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~ 304 (448)
T PRK09848 226 RNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLG 304 (448)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 345566666666666666666666777888888998776666555555666778899999999999 9999999999888
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChh-hhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ-ERRAKSS 193 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~ 193 (558)
+++.+++.+... .+.+.+++..++.++|.+...+...++.+|..|.++.. .++.+|.
T Consensus 305 ~i~~~~~~~~~~----------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~ 362 (448)
T PRK09848 305 TCGYLLFFWVSV----------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGL 362 (448)
T ss_pred HHHHHHHHHcCc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhH
Confidence 888777765422 23556677788889999999999999999988764311 0112588
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccc
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNW 222 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 222 (558)
..+.+++...+|..+|+.+.+.+.+..|+
T Consensus 363 ~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 363 TYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88999999999999999988876554444
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-08 Score=120.38 Aligned_cols=164 Identities=13% Similarity=0.014 Sum_probs=129.2
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChH-HHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTA-TAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
+.++..+...++..+..+.+..+++.|+++.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence 4445444444444455556778889999999999999 999999999999999999999999998 99998888888777
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
++.++..+..+ .+.+++..++.|++.++..+...+++.+.+|++. |++++
T Consensus 311 ~~~~~~~~~~~------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~ 360 (1146)
T PRK08633 311 LSLFLLPTAPS------------------------LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVL 360 (1146)
T ss_pred HHHHHHHHhhh------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhh
Confidence 77776666543 6667777888899999988888999999999988 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecc-cccchhhhHHHHH
Q 008632 196 NWWYFGISFGANSTILVVIYIQD-NLNWALGFGIPCA 231 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~-~~g~~~~f~~~~~ 231 (558)
++.++..++|..+++.+++.+.. ..++...|.+.+.
T Consensus 361 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 361 AANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999888877776644 2344445544433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.6e-09 Score=107.17 Aligned_cols=144 Identities=24% Similarity=0.269 Sum_probs=116.2
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGES-TATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILG 117 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~ 117 (558)
+|......+...+.++....+++.|+++++|.+ ..+.+.+.+...+...++.++.|+++||+ |+|+..........++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 286 (352)
T PF07690_consen 208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG 286 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence 343344444445566678889999999999999 89999999999999999999999999998 9888887777766666
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH
Q 008632 118 LSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (558)
.+.+.+.... .+....++..++.|++.+...+....++.|.+|+++ |+++.++
T Consensus 287 ~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~ 339 (352)
T PF07690_consen 287 ALGLLLLPFS---------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGL 339 (352)
T ss_dssp HHHHCCSHHH---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHH
T ss_pred HHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHH
Confidence 6665544330 124556667788899999999999999999999888 9999999
Q ss_pred HHHHHHHHHHhhh
Q 008632 198 WYFGISFGANSTI 210 (558)
Q Consensus 198 ~~~~~~~g~~~~~ 210 (558)
++...++|..+||
T Consensus 340 ~~~~~~~~~~igP 352 (352)
T PF07690_consen 340 FNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 9999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-08 Score=120.76 Aligned_cols=185 Identities=10% Similarity=-0.077 Sum_probs=133.2
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
+.+.++.+.+..++..+.++.+..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++||. ++++.+..+.++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~ 301 (1140)
T PRK06814 223 ADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLM 301 (1140)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHH
Confidence 345667677666666777777888999999999999999999999999999999999999999987 7777666665555
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCC--CCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCS--PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
.++.+.+.+... ..... ........ -...+.+.++++.++.|++.+...+...+++.+.+|++. ||
T Consensus 302 ~~~~~~l~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G 369 (1140)
T PRK06814 302 GLFGLDLAFASS-SVPAE-----PAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RA 369 (1140)
T ss_pred HHHHHHHHhccc-ccccc-----cccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ce
Confidence 554444333200 00000 00000000 000225667778888999999999899999999999998 99
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheecc-cccchhhhHHHHHH
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQD-NLNWALGFGIPCAF 232 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~-~~g~~~~f~~~~~~ 232 (558)
++++.+++..++|..+++++.+.+.+ ..++...|++.+++
T Consensus 370 ~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 370 RVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999999999999988863 34556555544443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=107.61 Aligned_cols=178 Identities=14% Similarity=0.122 Sum_probs=123.2
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchh--------HH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRF--------RT 106 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--------~~ 106 (558)
..+.+|.+....++++.+++.+..++|.|+++.+|++.++.|+..+...+...+..+++|.++||. -+| |.
T Consensus 256 ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rki 334 (466)
T KOG2532|consen 256 TSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKI 334 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHH
Confidence 447788888999999999999999999999999999999999999999999999999999999997 441 22
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCCh
Q 008632 107 -IVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNP 185 (558)
Q Consensus 107 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~ 185 (558)
-.++....+++.+.+++... .........+.++..+.|...++. ..-..|..|.+
T Consensus 335 fn~i~~~~~ai~l~~l~~~~~------------------~~~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~apq~-- 390 (466)
T KOG2532|consen 335 FNTIAFGGPAVFLLVLAFTSD------------------EHRLLAVILLTIAIGLSGFNISGF----YKNHQDIAPQH-- 390 (466)
T ss_pred HHhHHHHHHHHHHHeeeecCC------------------CcchHHHHHHHHHHHHcccchhhh----HhhhhhccchH--
Confidence 12233333333333333321 000011222222222223332222 12122223432
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccc---ccchhhhHHHHHHHHHHHHHHHH
Q 008632 186 QERRAKSSFFNWWYFGISFGANSTILVVIYIQDN---LNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 186 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
-+..+++.+...++.+.++|.+.+.+... ..|+.+|.+.+++.+++.+++..
T Consensus 391 -----a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 391 -----AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 78899999999999999999999999842 36999999999888777655543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=107.58 Aligned_cols=176 Identities=15% Similarity=0.106 Sum_probs=148.1
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcc--hhHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLG--RFRTIVVASLIY 114 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~~~~~~~~~ 114 (558)
+.++.......+..++++.-...++.|.+ ..+++..++..+.+...+...++.++.|+++|+. . ++.+..+++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 56666666677777888888888999888 8999999999999999999999999999999997 6 344445556666
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.+....+.+..+ ++.++..-++.|+..|.+....+..+.|..+.++ ...+
T Consensus 376 gl~~~~~p~~~~------------------------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a 425 (509)
T KOG2504|consen 376 GLARLFLPFATT------------------------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNA 425 (509)
T ss_pred HHHHHHHHHhcc------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchH
Confidence 666656666544 7788888889999999998888899999999988 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHHHcC
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFLLGT 244 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~ 244 (558)
+|+......++..+||.+.|.+.+..| |...|+..++..+++...++..+
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999999999887 99999999988887776665544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.4e-08 Score=100.59 Aligned_cols=155 Identities=14% Similarity=-0.055 Sum_probs=115.5
Q ss_pred HHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008632 51 FAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLL 130 (558)
Q Consensus 51 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 130 (558)
.........++.|+++.+|.++.+.+++.+...++..++.++.|++.||. ++|+.+..+.+ ..+......+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~----- 291 (393)
T PRK11195 219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH----- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh-----
Confidence 33444555667788888999999999999999999999999999999998 99988877753 333333333332
Q ss_pred ccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhh
Q 008632 131 SSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTI 210 (558)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 210 (558)
+.+...+..++.|++.+...+...+.+.+..|++. .+|++.++.+...++|..++.
T Consensus 292 -------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~ 347 (393)
T PRK11195 292 -------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLML 347 (393)
T ss_pred -------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHH
Confidence 25556667778899988888878888777655432 169999999999999999999
Q ss_pred hhhheecccccchhhhHHHHHHHHHHH
Q 008632 211 LVVIYIQDNLNWALGFGIPCAFMVAAL 237 (558)
Q Consensus 211 ~~~~~l~~~~g~~~~f~~~~~~~~~~~ 237 (558)
.+.+.+ +..|-+..+++.+...++..
T Consensus 348 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ 373 (393)
T PRK11195 348 GLYSLL-VKLGVPVVAVIVGFGLLVAL 373 (393)
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 888855 55677777776555544433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=98.66 Aligned_cols=167 Identities=10% Similarity=-0.042 Sum_probs=111.4
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchh---HHHHH-HH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRF---RTIVV-AS 111 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr---~~~~~-~~ 111 (558)
.|.+|.+....++....+|++..++|.|+++ .|++.. .+.......+.+.++ .++++||. .|| +.... ..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~ 264 (368)
T TIGR00903 191 RKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAA 264 (368)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHH
Confidence 3667778788888888999999999999965 678764 555555554444444 58888887 543 33222 23
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhh
Q 008632 112 LIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191 (558)
Q Consensus 112 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 191 (558)
++.++......+..+ ....++...+.+++.....+...++.+|.+|++. |
T Consensus 265 ~~~a~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------r 314 (368)
T TIGR00903 265 LLIAAFFLALAFELN------------------------RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------H 314 (368)
T ss_pred HHHHHHHHHHHHccc------------------------cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------c
Confidence 333332222222211 2223334455566666666777889999999998 9
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008632 192 SSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 192 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
+++.++.+...++|+..+|.+.+.+.. |.+..|.+.+...+++.+..
T Consensus 315 gt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 315 GKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887663 66666766666555554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.7e-08 Score=106.33 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=100.1
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCC
Q 008632 66 GQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCS 145 (558)
Q Consensus 66 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (558)
+.++.+..... ....+....+.++.++++||+ |||+.+..+.++.+++.+++.+..+
T Consensus 351 ~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~------------------- 407 (505)
T TIGR00898 351 GNLGGNIYLDL---FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV------------------- 407 (505)
T ss_pred cccCCChHHHH---HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC-------------------
Confidence 34555543333 344556677888899999998 9999999998888887777665432
Q ss_pred CCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecccccchhh
Q 008632 146 PHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALG 225 (558)
Q Consensus 146 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 225 (558)
...+...+..++.+++.+...+....+.+|.+|.+. |++++++.+....+|++++|.+.+ +.+ .++..+
T Consensus 408 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~ 476 (505)
T TIGR00898 408 ---DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLP 476 (505)
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhH
Confidence 112333444455556666666778889999999988 999999999999999999999988 433 456666
Q ss_pred hHHHHHHHHHHHHHH
Q 008632 226 FGIPCAFMVAALVLF 240 (558)
Q Consensus 226 f~~~~~~~~~~~~~~ 240 (558)
+.+.+.+.+++.+..
T Consensus 477 ~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 477 LVLFGGLALLAGILT 491 (505)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665555444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.7e-08 Score=100.24 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=60.3
Q ss_pred hhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008632 55 GISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLAL 126 (558)
Q Consensus 55 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~ 126 (558)
.+....+.|+++++|++..+.+.......+...++.++.|++.||+ |||+.+..+.++..++...+.+...
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~ 291 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSPS 291 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888999999999999999999999999999999998 9999999998888888877776543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=97.48 Aligned_cols=150 Identities=8% Similarity=-0.060 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHH
Q 008632 38 AASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILG 117 (558)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~ 117 (558)
..+.......+.....+.+..+.+.++.+.+|.+..+.+++.....+...++.++.|+++||+ |||+.+..+.++..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 334344444444445555666677788888999999999999999999999999999999998 9999998887765443
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH
Q 008632 118 LSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (558)
.+......... .+.+...++..+.+.+.+...+.....+.|..| +. ++++.+.
T Consensus 274 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~ 326 (377)
T PRK11102 274 GIWLVVSALLD--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSL 326 (377)
T ss_pred HHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHH
Confidence 33322221100 113334444444444445555555566677766 45 8888887
Q ss_pred HHHH-HHHHHHhhhhhhhe
Q 008632 198 WYFG-ISFGANSTILVVIY 215 (558)
Q Consensus 198 ~~~~-~~~g~~~~~~~~~~ 215 (558)
.+.. ..+|..+++++++.
T Consensus 327 ~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 327 AGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6554 35777777766553
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=100.79 Aligned_cols=187 Identities=16% Similarity=0.064 Sum_probs=126.5
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.+.+...+.+.+.+.++.-.........+-++-|++..++.+..........+..+++.++.||+ |||+.++.+..+..
T Consensus 268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~ 346 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMA 346 (485)
T ss_pred hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence 34455666666777766655555555566668899999999999999999999999999999998 99999999999888
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccc-cccccccccccCCCCCChhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGG-HKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
+...++.......... +....+..+++.++..+..+. ..|...-+.+|++|.+. |..+
T Consensus 347 ~~~~~~~~~~~l~~~~---------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa 405 (485)
T KOG0569|consen 347 VALLLMSIALFLSNSF---------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAA 405 (485)
T ss_pred HHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHH
Confidence 8888777654321100 000011223444443333333 34677788899999988 9999
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCc
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTK 245 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 245 (558)
.++......+...+-......+.+.+|- ..|.+..+...+..+..++..|
T Consensus 406 ~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 406 QSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCc
Confidence 9988777777766666666677776664 4555444444444444444333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-07 Score=97.09 Aligned_cols=147 Identities=12% Similarity=0.026 Sum_probs=105.1
Q ss_pred HHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 49 ERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALIT 128 (558)
Q Consensus 49 ~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 128 (558)
....++.+..+.|.|++ ++|++..+.++......+...++..+.+++.||+ |+|+.+....+..+++.+.+.......
T Consensus 215 ~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (401)
T PRK11043 215 CSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLS 292 (401)
T ss_pred HHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445556677787776 5799999999888888888889999999999998 999987666665555544433321100
Q ss_pred hcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHh
Q 008632 129 LLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANS 208 (558)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 208 (558)
....+.+.+...+.+++.+...+...+...|..| ++ ++++.++++.....++..
T Consensus 293 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~~~~ 346 (401)
T PRK11043 293 -------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGLCFL 346 (401)
T ss_pred -------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHHHHH
Confidence 0124445555667788888888887777777776 35 899999999887888888
Q ss_pred hhhhhheecccccch
Q 008632 209 TILVVIYIQDNLNWA 223 (558)
Q Consensus 209 ~~~~~~~l~~~~g~~ 223 (558)
++.+.+.+.+.....
T Consensus 347 ~~~~~g~l~~~~~~~ 361 (401)
T PRK11043 347 ASLLVSALISTPLLT 361 (401)
T ss_pred HHHHHHHccCCChhH
Confidence 888888887643333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=101.89 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=115.5
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.|.++.++...++.....+......+.|.+..++ +....+++.+...+...++.++.++++||+ |||+++..+.++.+
T Consensus 230 n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~ 307 (473)
T PRK10429 230 NDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPV 307 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHH
Confidence 3666666666666666665555555555554444 455666666666688889999999999999 99999998887767
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCCh-hhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNP-QERRAKSSF 194 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~ 194 (558)
++.+........+ ..+.+.+++.-++.+++.+...+...++++|..|.++- ..++..|..
T Consensus 308 ~~~~~~~~~~~~~-------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~ 368 (473)
T PRK10429 308 LSCGVLLLMGLAA-------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIA 368 (473)
T ss_pred HHHHHHHHHhccC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHH
Confidence 6665554321000 02355566677778899998888999999999875421 111124558
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccc
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNW 222 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 222 (558)
++.+.+...+|..+++.+.|++.+..|+
T Consensus 369 ~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 369 YSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8889988999999999998887665554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=98.03 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHH
Q 008632 38 AASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILG 117 (558)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~ 117 (558)
..+.+....++.....+....+++.|+++.+|++..+.+++.....+...++.+++|+++||+ |||+.+..+......+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG 304 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence 344444444444455667778899999999999999999999999999999999999999998 9998888777666666
Q ss_pred HHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhH
Q 008632 118 LSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNW 197 (558)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (558)
..+..+... + ..+.+...+...+.+++.|...+...++++|.+|. + ++++.++
T Consensus 305 ~~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~g~ 357 (366)
T TIGR00886 305 AFLVVLGLV-------------------S-PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVSGL 357 (366)
T ss_pred HHHHHhcCC-------------------C-cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHHHH
Confidence 655554321 0 00244444555555566666666677778888873 4 8999999
Q ss_pred HHHHHHHHH
Q 008632 198 WYFGISFGA 206 (558)
Q Consensus 198 ~~~~~~~g~ 206 (558)
.+...++|+
T Consensus 358 ~~~~~~~g~ 366 (366)
T TIGR00886 358 VGAIGNLGG 366 (366)
T ss_pred HHHhccCCC
Confidence 888777663
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=91.15 Aligned_cols=126 Identities=11% Similarity=0.133 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHH
Q 008632 81 VWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYL 160 (558)
Q Consensus 81 ~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (558)
+.++...-+.++.|++.||+ |||+++-.+.+++.+..+++...-+ .|.++ ..++.+|++
T Consensus 389 itslaefPGlLIt~~iverl-GRKkTMal~l~~f~iflfll~~c~~-----------rn~~t---------vllf~araf 447 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERL-GRKKTMALSLILFGIFLFLLTTCKT-----------RNAYT---------VLLFTARAF 447 (528)
T ss_pred HHHHhhCCchhHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHhcC-----------cchhH---------HHHHHHHHH
Confidence 34556677889999999998 9999999999999988888776533 22222 345556665
Q ss_pred HHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008632 161 VAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 161 ~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
+ .+...+.+.|..|.+|... |+.+.|.-....-+|+++.|.+. +....+-..+..+...+.+++.+.
T Consensus 448 i----sg~fqvaYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 448 I----SGAFQVAYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIA 514 (528)
T ss_pred H----hchheEEEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHH
Confidence 4 4445677899999999998 99999999988899999999888 322223233333444444444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-07 Score=98.59 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=106.1
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
|.++.+....++...+........+.|.+..++. ....+.+.....+...++.++.++++||+ |||+.+..+.++.++
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI 306 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 4444444444443333322223333344444433 33334455556677778888999999998 999999888776655
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChh-hhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ-ERRAKSSFF 195 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~ 195 (558)
+.....+... .+.+.+++..++.|++.+...+..+++++|..|.++.. .++..|..+
T Consensus 307 ~~~~~~~~~~----------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~ 364 (444)
T PRK09669 307 LSALIFFIPP----------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVF 364 (444)
T ss_pred HHHHHHHhCc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHH
Confidence 4433333211 23566677778899999999999999999999854321 112246678
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccc
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNW 222 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~ 222 (558)
+.+++...+|..+|+.++|.+.+..|+
T Consensus 365 s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 365 STNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 889989999999999999988766665
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.7e-07 Score=88.80 Aligned_cols=170 Identities=17% Similarity=0.104 Sum_probs=131.6
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+..|.+..---++++.+|..+.|+|.++. +.|+|..++|++.+...+......+..-.+++|.-.+|+..+...+.+.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 44565665556788999999999999988 56999999999999999999999999999999876788888888888999
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
|...+.+.+. . .+.+. .+++|+|.|+..+....++.+..++.+. -++-.+
T Consensus 287 G~~G~~~~P~----------------------~-~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSg 336 (395)
T COG2807 287 GLVGLLLAPG----------------------Q-LPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSG 336 (395)
T ss_pred HHHHHHHhhh----------------------h-HHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHH
Confidence 9888877654 1 22222 4889999999999999999888865331 455555
Q ss_pred HHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAAL 237 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~ 237 (558)
..+...-+=+..||.+.|++.|..| |+......+...++..
T Consensus 337 maQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~ 378 (395)
T COG2807 337 MAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML 378 (395)
T ss_pred HhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence 5555555557789999999998775 8877765554444333
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4e-06 Score=87.89 Aligned_cols=111 Identities=15% Similarity=0.221 Sum_probs=89.1
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcc
Q 008632 366 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP 445 (558)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (558)
...+.+..+.+++-++..+++.++++- +.+..|+.+..+-++.+..+
T Consensus 410 v~~a~~~~gEI~~~ffs~klI~kiGHv-----------~v~~lgLa~~~~Rf~~~S~L---------------------- 456 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFKLIEKIGHV-----------NVMYLGLACNVGRFLYYSYL---------------------- 456 (618)
T ss_pred ehhhhhccchHHHHHHHHHHHHHhccc-----------ceeeehhhHHHHHHHHHHHh----------------------
Confidence 455666777777777777775555442 35788999998888888876
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 008632 446 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINE 509 (558)
Q Consensus 446 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~ig~~~~~~i~~ 509 (558)
.++|.+.+.-++-++-.+....+..+|++...|++.|++++|+.. ....+|-.+|++++|.+.+
T Consensus 457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~ 521 (618)
T KOG3762|consen 457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE 521 (618)
T ss_pred cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence 577888888899999999888888899999999999999999988 6677888888888888754
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.9e-07 Score=94.44 Aligned_cols=174 Identities=11% Similarity=0.074 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHH
Q 008632 42 IIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMM 121 (558)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~ 121 (558)
.+...++.....-.+..+...|+++.-|.+....+...+...+.-...-.+.+++-.|+ |-|+++.++.+..++=..+.
T Consensus 212 Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~ 290 (400)
T PF03825_consen 212 FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLY 290 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444557778888865557777878777777777888888899999998 99999999999988888887
Q ss_pred HHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHH
Q 008632 122 TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFG 201 (558)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 201 (558)
+...++. ........++..++|+..|....+...++.+.+|++. |+++.++++..
T Consensus 291 a~~~~~~-------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~ 345 (400)
T PF03825_consen 291 AYFSDPW-------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSAL 345 (400)
T ss_pred HHhcCCc-------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHH
Confidence 7762200 0012233444567999999999999999999999998 99999998765
Q ss_pred -HHHHHHhhhhhhheecccccch------hhhHHHHHHHHHHHHHHH
Q 008632 202 -ISFGANSTILVVIYIQDNLNWA------LGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 202 -~~~g~~~~~~~~~~l~~~~g~~------~~f~~~~~~~~~~~~~~~ 241 (558)
..+|..+|..++|++.+++|-+ ..+.+.+++.++..+.++
T Consensus 346 ~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~ 392 (400)
T PF03825_consen 346 SFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV 392 (400)
T ss_pred HhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999887644 344445544444444443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.1e-05 Score=79.37 Aligned_cols=364 Identities=11% Similarity=0.033 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHH
Q 008632 79 VNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSL 158 (558)
Q Consensus 79 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (558)
.++......+..++++.+.|++ |.|+.+.++...+....+..... |.+.++++-
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-------------------------N~y~~yfss 109 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-------------------------NSYYLYFSS 109 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-------------------------chHHHHHHH
Confidence 5666667778889999999998 99999999988777766665543 367789999
Q ss_pred HHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhh---eecccc-----cch-h-----
Q 008632 159 YLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI---YIQDNL-----NWA-L----- 224 (558)
Q Consensus 159 ~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~---~l~~~~-----g~~-~----- 224 (558)
.+.|+|.+..+...-.+++|..++|+ +.+..++.-.....+..+|.+..- +..+.- +.+ .
T Consensus 110 allG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (461)
T KOG3098|consen 110 ALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVL 183 (461)
T ss_pred HHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchh
Confidence 99999999999999999999999888 566666544444555444433322 222110 110 0
Q ss_pred -----hhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcC
Q 008632 225 -----GFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLAT 299 (558)
Q Consensus 225 -----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (558)
...+..++..+..+.... . ...|.+.. .+.++ .. +..+.+..+..
T Consensus 184 ~~~~~i~~~~~v~~~~~~l~~i~---~-~~~p~~~~-~~~~~-----------------------~~-~~~~~~~l~~~- 233 (461)
T KOG3098|consen 184 FIDFEIKVLFGVLLAISVLSIIN---F-DFLPSKDV-VNCKS-----------------------SS-ETSFSELLKLT- 233 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhh---e-eecCccch-hhhhh-----------------------hc-cccHHHHHHHH-
Confidence 111111111111111100 0 00110000 00000 00 00000000000
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHH
Q 008632 300 PDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFI 379 (558)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (558)
-+.-..++++.+.+.+......-..+...++.... ..+..+ .....+.+.+.++.-.+.
T Consensus 234 -------------~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~----ft~~~~----~n~~~~~ai~~~~~g~g~ 292 (461)
T KOG3098|consen 234 -------------FKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCIS----FTRKLG----SNTTYLIAIYSIGIGLGE 292 (461)
T ss_pred -------------HHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhh----hhhhcc----CcchhHHHHHHHHHhHHH
Confidence 00012234444544444433333322222211111 111111 111223333444444444
Q ss_pred hhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHH
Q 008632 380 PIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCG 459 (558)
Q Consensus 380 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 459 (558)
...+.....+.||. ++ .+..+.+.++.++-.+.+++........ ++- ..++.+............+..++.|
T Consensus 293 v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~~p~d---ap~-~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 293 VIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLSFPND---APL-RPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhcccccc---CCC-CCCcccccccccchhHHHHHHHHHh
Confidence 34333333334443 22 4555667777777766665544321100 000 0011111112223556777778999
Q ss_pred HHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHH
Q 008632 460 IADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAAL 539 (558)
Q Consensus 460 ~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~ 539 (558)
+++.......+.+..... ++.|..+.+++-+.+.+++.++.+..+..... .........
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~l~--------------------~~~l~~~i~ 423 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLLLY--------------------IYTLGLPIF 423 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhHHH--------------------HHHHHHHHH
Confidence 999999888877788777 66689999999999999998887777666421 123444556
Q ss_pred HHHHHHHHHHhhccc
Q 008632 540 SAGGLLAFLYFAKSY 554 (558)
Q Consensus 540 ~~i~~~~~~~~~~~~ 554 (558)
+.+...++....+++
T Consensus 424 ~~i~~~~~~~~~~~~ 438 (461)
T KOG3098|consen 424 CVIATTIFFIVAERT 438 (461)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655544
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=96.62 Aligned_cols=177 Identities=11% Similarity=0.106 Sum_probs=139.1
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccC---CChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLG---ESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVAS 111 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~ 111 (558)
+.|.+|............|+.+....+.|.+..+. .++...|...+..-+.-.+...+..++-+|+ |.|+.++++.
T Consensus 218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag 296 (412)
T PF01306_consen 218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAG 296 (412)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHH
Confidence 44667776665555556677777778888875443 3455677777888888888889999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhh
Q 008632 112 LIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191 (558)
Q Consensus 112 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 191 (558)
.++++=..+++++++ .+.+.+.+.+.++-.+........++++.+|++- .
T Consensus 297 ~i~~iRi~~~~~~~~------------------------~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------s 346 (412)
T PF01306_consen 297 VIMAIRIIGSGFATN------------------------PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------S 346 (412)
T ss_dssp HHHHHHHHHHHT--S------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------H
T ss_pred HHHHHHHHHHhhhcc------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------H
Confidence 999999999988865 8889999999999999999999999999999766 6
Q ss_pred hhhhhH-HHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 192 SSFFNW-WYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 192 ~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
.+...+ ++.+..+|..+.+.++|.+.|+.|.+..|++.+.+++...++-..
T Consensus 347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 347 ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence 677776 467778999999999999999999999998777665554444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-06 Score=83.62 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=102.1
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 008632 59 NLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNN 138 (558)
Q Consensus 59 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 138 (558)
.....+|+++|+|.+|...+...-.++..++ ++.|.+.|++ |.+.++.+|.+...+|+.+++++.+-..
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i--------- 91 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRI--------- 91 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcc---------
Confidence 3445689999999999999999999998875 7789999999 9999999999999999999998755111
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhee
Q 008632 139 NTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI 216 (558)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 216 (558)
.....|.+++..++.+.+.+....++.....+.||+ + ||.+.++.-....+++.+-..+...+
T Consensus 92 --------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 92 --------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred --------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHH
Confidence 013477788777777777777666666666789985 5 99999997777777665544444333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=92.19 Aligned_cols=138 Identities=11% Similarity=0.026 Sum_probs=98.4
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 008632 57 SSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQ 136 (558)
Q Consensus 57 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 136 (558)
....+.|+++.+|.+..+.++.......+..++.++.+++.||+ ||+... +.....++.+.........
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~-------- 295 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG-------- 295 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc--------
Confidence 34556688888999999999988888888888889999999998 743333 2222222222222111000
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhee
Q 008632 137 NNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI 216 (558)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 216 (558)
..+.+.++...++.++|.+...+...+...|.+|+ + ++...++.+...++|+.+++.+++.+
T Consensus 296 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 296 -----------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred -----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 01245567778888999999889999988898873 4 88889999988999999999999988
Q ss_pred cccccch
Q 008632 217 QDNLNWA 223 (558)
Q Consensus 217 ~~~~g~~ 223 (558)
.....+.
T Consensus 358 ~~~~~~~ 364 (394)
T PRK11652 358 PQTGQFS 364 (394)
T ss_pred cCCchHH
Confidence 7654343
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-06 Score=74.49 Aligned_cols=133 Identities=18% Similarity=0.323 Sum_probs=94.7
Q ss_pred HHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHH
Q 008632 372 GIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWL 451 (558)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (558)
.+..++..++.+++.|+..||+ .+..+..+..++.+..... .+.+..
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~-----------~~~~~~~~~~~~~~~~~~~----------------------~~~~~~ 54 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKP-----------VLLVGLFIFVLSTAMFALS----------------------SNITVL 54 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhH-----------HHHHHHHHHHHHHHHHHHh----------------------ccHHHH
Confidence 4455566777777656555443 4556666666665554432 344556
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHH
Q 008632 452 IPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDY 531 (558)
Q Consensus 452 ~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~ 531 (558)
.+..++.+++.+...+....++.|..|++.|+++.++.++...+|..+++.+.+.+.+.. +| .+
T Consensus 55 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~----------~~ 118 (141)
T TIGR00880 55 IIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL------GW----------RA 118 (141)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc------ch----------HH
Confidence 667778888888877777788999999999999999999999999999999999886421 22 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 008632 532 FYWLLAALSAGGLLAFLYFAKS 553 (558)
Q Consensus 532 ~~~~~a~~~~i~~~~~~~~~~~ 553 (558)
.|++.+.+.+++.+..+++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 119 PFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC
Confidence 6777777777776666665543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=92.03 Aligned_cols=148 Identities=11% Similarity=0.016 Sum_probs=106.3
Q ss_pred hhhhHHHHHHHhccc-cCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008632 53 YYGISSNLITYLTGQ-LGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLS 131 (558)
Q Consensus 53 ~~~~~~~l~~yl~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 131 (558)
..+..++++.|+++. .+.+....+...+.+.....++.+++|+++||+ ++||++.+..++..+..++..+.+.
T Consensus 248 e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~~~~~~----- 321 (410)
T TIGR00885 248 QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGSIFAGG----- 321 (410)
T ss_pred HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 345567888888653 355555556666777788899999999999998 9999988887777777666665422
Q ss_pred cccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhh
Q 008632 132 SSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTIL 211 (558)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 211 (558)
.. .....++.|+..+.+.|...+...+..+++. +..... ..++ .+|+.+.|.
T Consensus 322 -------------------~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~-l~~~-~~Gga~~p~ 373 (410)
T TIGR00885 322 -------------------HV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAG-LVMA-IIGGGIVPP 373 (410)
T ss_pred -------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHH-HHHH-HhccchHHH
Confidence 22 2455666778888888999999999998654 322222 2223 399999999
Q ss_pred hhheecccc------cchhhhHHHHHHHH
Q 008632 212 VVIYIQDNL------NWALGFGIPCAFMV 234 (558)
Q Consensus 212 ~~~~l~~~~------g~~~~f~~~~~~~~ 234 (558)
+.|.+.|.. +.+..|+++.++.+
T Consensus 374 l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 374 LQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred HHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 999999854 47778887665544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-06 Score=89.04 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=124.0
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.|.+....+..++...++....+.+..|.+..+|.+.....+..........++.++..++++|+ |+|+++..+.++.+
T Consensus 235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~ 313 (467)
T COG2211 235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLA 313 (467)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHH
Confidence 34454444555555555555556667788888888998888888888888888899999999999 99999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCC-hhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQN-PQERRAKSSF 194 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~ 194 (558)
++.++..+... .+.+.+++..++.++|.+...+..+++++|..+.++ +-.++.-|..
T Consensus 314 i~~~~~~f~~~----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~ 371 (467)
T COG2211 314 VGYLLLYFTPA----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIV 371 (467)
T ss_pred HHHHHHHhhcC----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhH
Confidence 99999998753 457888888999999999999999999999998543 1122223666
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccc
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNL 220 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~ 220 (558)
++.+.+..-+|.+++-.+.|++....
T Consensus 372 ~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 372 YSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777777778777776666554333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.7e-07 Score=92.23 Aligned_cols=174 Identities=10% Similarity=-0.043 Sum_probs=125.3
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHH--HHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTI--VVASLIY 114 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~--~~~~~~~ 114 (558)
+.++.+.+.-...+.+.-...+.+++++.|++..+..+.|+..--.++.+.++..+.|.++||+ +.-+.+ ..+++..
T Consensus 270 P~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~ 348 (464)
T KOG3764|consen 270 PYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATV 348 (464)
T ss_pred chHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHH
Confidence 3344455444445555556778899999999996666999998889999999999999999999 943333 3333333
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.+......++++ +..+++-++..+++.+...+........+.+.+...+-.--|..
T Consensus 349 G~~~~~iP~~~~------------------------~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsV 404 (464)
T KOG3764|consen 349 GVSSGPIPFATS------------------------IAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSV 404 (464)
T ss_pred HHHhchhHhhhh------------------------HHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeH
Confidence 333333334433 77788888888888888777776666666664432211136888
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVA 235 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 235 (558)
.++...+..+|..+||.++|.+.+.+|++|.-.+.+...++
T Consensus 405 yaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 405 YAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred HHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877666655443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=86.51 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=84.4
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 008632 60 LITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNN 139 (558)
Q Consensus 60 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 139 (558)
...|.+..+|.. ...+.+...+.+...++.+++++++||+ |+|+++..+.++..+...+..+...
T Consensus 251 ~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~------------- 315 (460)
T PRK11462 251 MMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFVPM------------- 315 (460)
T ss_pred hhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhch-------------
Confidence 333333334433 3445566777888888999999999998 9998877555544443333333211
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhh-hhhhhhhhhHHHHHHHHHHHhhhhhhheecc
Q 008632 140 TAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQE-RRAKSSFFNWWYFGISFGANSTILVVIYIQD 218 (558)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 218 (558)
.+...+++..++.|++.+...+...++++|..+.++-.. ++..|..++.+.+...+|..+++.++|.+.+
T Consensus 316 ---------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 316 ---------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233444455677777777777788888877432111 1112444566777788888888888776654
Q ss_pred cccc
Q 008632 219 NLNW 222 (558)
Q Consensus 219 ~~g~ 222 (558)
..|+
T Consensus 387 ~~Gy 390 (460)
T PRK11462 387 YGGY 390 (460)
T ss_pred HcCC
Confidence 4443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=84.69 Aligned_cols=173 Identities=16% Similarity=0.048 Sum_probs=112.5
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
|.++.......+....++......|.++++.+|.+..+.++.......+..++..+.+.+.+|. ++++.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 5566555555666666777777889999999999999999988778888888778888876554 444444433444444
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
+..+........ + ...+..+++.++.++|.+...|...... +.+.+.+ +|++.+
T Consensus 297 g~~l~~~~~~~~-----------------~--~~~~~~~~~~~l~~~G~~~~~p~~~~~a--l~~~~~~-----~G~a~a 350 (413)
T PRK15403 297 GLALLIVGNLLW-----------------P--HVWLWSVLGTSLYAFGIGLIFPTLFRFT--LFSNNLP-----KGTVSA 350 (413)
T ss_pred HHHHHHHHHHHc-----------------c--ccHHHHHHHHHHHHHHHHHHhHHHHHHH--hccCCCC-----CcHHHH
Confidence 444443321100 0 1133456677888888888877777432 2322211 788888
Q ss_pred HHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHH
Q 008632 197 WWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAAL 237 (558)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 237 (558)
+++.....+..+++...+++.++ +-++.|....++..+..
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 390 (413)
T PRK15403 351 SLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIV 390 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHH
Confidence 88888888888888888887665 55666665555444333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.2e-06 Score=90.34 Aligned_cols=182 Identities=8% Similarity=-0.035 Sum_probs=122.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhccccCCChHH----HHHHHHHHHHHHHHHHHHHH----HHhHhhcchhHHH--HHHHH
Q 008632 43 IGVEVAERFAYYGISSNLITYLTGQLGESTAT----AAAAVNVWSGTASLLPLLGA----FLADSFLGRFRTI--VVASL 112 (558)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~G----~laDr~~Grr~~~--~~~~~ 112 (558)
.....+....+.-..+.++.|.+++.+.+... .+++.+.-.+.-.+..++.. ++.||-.+.+... .+|++
T Consensus 278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~ 357 (475)
T TIGR00924 278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGML 357 (475)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 33333444555555666777877665544322 45666666666666655544 4444411333333 67888
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 113 IYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
+.+++.+.+.+...... . ....+.+.+++..++.++|.....|...+++++..|++. |+
T Consensus 358 l~~~~~~~~~~~~~~~~--------~-------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g 416 (475)
T TIGR00924 358 FCGASFLTFAASIWFAD--------A-------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MG 416 (475)
T ss_pred HHHHHHHHHHHHHhhcC--------C-------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HH
Confidence 88888877766422000 0 112458889999999999999999999999999999988 99
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCc
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTK 245 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 245 (558)
++++++.....+|..+++.+.....+..+|...|...+..+++..++++...|
T Consensus 417 ~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 417 QMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888887666667777776666655555555444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-05 Score=76.69 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=96.1
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 008632 58 SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQN 137 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (558)
.....|+.+.+|+...+++.+........++...+.|.|+||- |||+.-+ .+.+.++++.+.-.
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracv----tycitYiLsCiTKh----------- 120 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACV----TYCITYILSCITKH----------- 120 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-cccccee----eehHHHHHHHHhhc-----------
Confidence 3344567778888888888877777777778888899999998 9999754 34555555554422
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccc-cccCCCCCChhhhhhhhhhhhHH-HHHHHHHHHhhhhhhhe
Q 008632 138 NNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAF-GADQFDAQNPQERRAKSSFFNWW-YFGISFGANSTILVVIY 215 (558)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~ 215 (558)
+++.-++.++|.+-|+..+....+--+. ++|....+ +-|.++...-++-. .++..+-++++-+.+..
T Consensus 121 ----------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr-~FeqqWls~TFskA~ffgNglvAiiaGlfgn~ 189 (454)
T KOG4332|consen 121 ----------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKR-GFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNL 189 (454)
T ss_pred ----------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhcc-CChHhhhhHHHHHHHHhhccHHHHHHHHHHHH
Confidence 2457779999999999988766555443 45554332 22222222222221 12222334444444455
Q ss_pred eccccc--chhhhHHHHHHHHHHHHHHHHcC
Q 008632 216 IQDNLN--WALGFGIPCAFMVAALVLFLLGT 244 (558)
Q Consensus 216 l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~ 244 (558)
+.+.++ --.+|-.++.+..++..+.+..+
T Consensus 190 lvd~~slGPVAPFdAAacfLaigmAvil~~W 220 (454)
T KOG4332|consen 190 LVDTFSLGPVAPFDAAACFLAIGMAVILSSW 220 (454)
T ss_pred HHHHhccCCCCchHHHHHHHHHHHHHHHhhh
Confidence 555554 44566655555555555554433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-05 Score=78.53 Aligned_cols=146 Identities=17% Similarity=0.277 Sum_probs=109.2
Q ss_pred HHHHHHhccccCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008632 58 SNLITYLTGQLGEST--ATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDC 135 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 135 (558)
...+.+.. +++.+. ...++..+.+.+...++.++.|.++||+ |||+.+..+.....++.+++.+..+
T Consensus 23 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
T COG0477 23 PALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--------- 91 (338)
T ss_pred HHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence 34444444 444444 5788899999999999999999999999 9998888887765555445544321
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCC-CChhhhhhhhhhhhHHHH-HHHHHHHhhhhhh
Q 008632 136 QNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDA-QNPQERRAKSSFFNWWYF-GISFGANSTILVV 213 (558)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~ 213 (558)
...+.+.+.|+++|++.+...+...+++.|..|+ ++ |+...+.... ...+|..+++.++
T Consensus 92 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T COG0477 92 -------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLA 152 (338)
T ss_pred -------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2377888999999999999999999999999997 33 8888888777 5778888888777
Q ss_pred heeccc--ccchhhhHHHHHHH
Q 008632 214 IYIQDN--LNWALGFGIPCAFM 233 (558)
Q Consensus 214 ~~l~~~--~g~~~~f~~~~~~~ 233 (558)
+.+... .+|+..|.+.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 153 GLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHhcchHHHHHHHHHHH
Confidence 666543 56888666555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.1e-05 Score=79.54 Aligned_cols=165 Identities=21% Similarity=0.293 Sum_probs=134.4
Q ss_pred HHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 50 RFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITL 129 (558)
Q Consensus 50 ~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 129 (558)
.++++.=...+=+|=.+.||++..+..-+...+..+..++..+.|++..|-.+++++...++.+.+++..+..++..
T Consensus 221 t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~--- 297 (403)
T PF03209_consen 221 TLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP--- 297 (403)
T ss_pred HHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh---
Confidence 34454555666678888999999999999999999999999999999885449999988999888888888776644
Q ss_pred cccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhh
Q 008632 130 LSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANST 209 (558)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 209 (558)
..+.+.+..+.++.|+|.|.+.....+..-|+.++++ .|.+++.+.....++..++
T Consensus 298 ------------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg 353 (403)
T PF03209_consen 298 ------------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLG 353 (403)
T ss_pred ------------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHH
Confidence 1347889999999999999999999999999998888 8999999999999988888
Q ss_pred hhhhheecc----------cccchhhhHHHHHHHHHHHHHHH
Q 008632 210 ILVVIYIQD----------NLNWALGFGIPCAFMVAALVLFL 241 (558)
Q Consensus 210 ~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~ 241 (558)
..++|.+.| ..+|..+|.+-++..++++++..
T Consensus 354 ~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 354 TFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 888876644 23466777777777776666553
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-08 Score=107.73 Aligned_cols=177 Identities=17% Similarity=0.178 Sum_probs=105.7
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHH
Q 008632 38 AASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILG 117 (558)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~ 117 (558)
.+........+..+..+....+...++.++.+.+.. -+......+...++.+++.++.||+ |||+.++.+.++.++.
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 444444444444444444444444555566677766 2222334455567777778999998 9999999998887777
Q ss_pred HHHHH--HHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 118 LSMMT--LLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 118 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
.+.++ .... . + . +...+...+............+..+....+.+|.+|.+. |.++.
T Consensus 330 ~~~~~~~~~~~-----~----~--~-----~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~ 387 (451)
T PF00083_consen 330 SLILGIIFFLG-----V----S--S-----SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGI 387 (451)
T ss_pred ccccccccccc-----c----c--c-----ccccccccceeeeeccccccccccccccccccccccccc------ccccc
Confidence 77665 1110 0 0 0 000011111111111112222344666788899999998 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
++.+....+++.+++.+...+.+..+-...|.+.+.+.++..++
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 99888888999999988888887766234444444444444433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.9e-06 Score=88.10 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=106.9
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHh----hcchhHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADS----FLGRFRTIVVASL 112 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr~~~~~~~~ 112 (558)
+.+|...+..++.....|++..++|.|+++..|+|..+++++...+.+++.++.+++|+++|| . .+|..+...+.
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~ 351 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLC 351 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence 567777788888888999999999999999778999999999999999999999999999999 5 77777766665
Q ss_pred HHHHHH-HHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhh
Q 008632 113 IYILGL-SMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191 (558)
Q Consensus 113 ~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 191 (558)
++.+.. +.+..... ......+.+....+.+...++...-..+....+.+ |
T Consensus 352 ~~~~~g~~~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-----~ 402 (495)
T KOG2533|consen 352 LYAIIGAISLLAAAV------------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-----A 402 (495)
T ss_pred HHHHHHHHHHHhhcc------------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchHH-----h
Confidence 544433 44443321 11111111222222222233334444555544331 4
Q ss_pred hhhhhHHHHHHH-HHHHhhhhhhheecccccchhhhHHHH
Q 008632 192 SSFFNWWYFGIS-FGANSTILVVIYIQDNLNWALGFGIPC 230 (558)
Q Consensus 192 ~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~g~~~~f~~~~ 230 (558)
-...+.+..+.+ .|.+.+++.-+.....++|...|....
T Consensus 403 ~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 403 LTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred HHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 444555444444 455556666666777778988884433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=84.48 Aligned_cols=203 Identities=11% Similarity=0.002 Sum_probs=142.0
Q ss_pred ccCCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhcc-ccCCChH------H----HHHHHHHHHHHHHHHHHHHHHHhHh
Q 008632 31 LNSGGWRAASFIIGVEVAERFAYYGISSNLITYLTG-QLGESTA------T----AAAAVNVWSGTASLLPLLGAFLADS 99 (558)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~------~----~~~~~~~~~~~~~~~~~~~G~laDr 99 (558)
..+..++.++.+..+.++.-++++.+..+.+.|+.+ .++-++. + ..+....+.+...+..++.-++.+|
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999888888888874 3443221 1 2233344445555666677888999
Q ss_pred hcch-hHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCC-----CCCCCCchhHHHHHHHHHHHHHcccccccccc
Q 008632 100 FLGR-FRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTA-----KSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQ 173 (558)
Q Consensus 100 ~~Gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~ 173 (558)
+ |+ |++...+.++.+++.+...+.++... |+++ ....|+....+..++...+.|+..+.....-.
T Consensus 332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPf 402 (477)
T TIGR01301 332 W-GAGKRLWGIVNIILAICLAATVLVTYVAK--------NSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPF 402 (477)
T ss_pred h-ccchhHHHHHHHHHHHHHHHHHHHHhhhh--------ccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence 8 85 67768888888888888876543110 0000 00112222246666777889999999999999
Q ss_pred cccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccccc--chhhhHHHHHHHHHHHHHHHHcCcc
Q 008632 174 AFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN--WALGFGIPCAFMVAALVLFLLGTKT 246 (558)
Q Consensus 174 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~ 246 (558)
+++++..+++.. +.|..+|+.|...-+...+..+..|.+.+..| -.+++.++++.++++.+..++..|+
T Consensus 403 al~s~~~~~~~~----~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 403 ALASIRSSNLGA----GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHccccCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999995431 16999999999999999988888777665554 4567778888888777776665554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0021 Score=66.81 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 446 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII 507 (558)
Q Consensus 446 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i 507 (558)
.+.|.+++..+.-|+..+...+.....+.+..|++.|-.++|.......+|-.++..++-.+
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35566666666777777777766667788899999999999999988888888777765555
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0013 Score=68.50 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=104.2
Q ss_pred hHHHHHHHhccc-cCCChHHHH-HHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008632 56 ISSNLITYLTGQ-LGESTATAA-AAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSS 133 (558)
Q Consensus 56 ~~~~l~~yl~~~-~~~s~~~~~-~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 133 (558)
.-+++..|+.+. .|++..|.. -+.-...-.....-++...++|.. |-|++++.+.+...+...++.+..+
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s------- 93 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS------- 93 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc-------
Confidence 347788899886 899988775 333334445556667779999998 9999999999988888888888755
Q ss_pred cccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhh
Q 008632 134 DCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV 213 (558)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 213 (558)
...+-+..++.|++.+.. .+..+++--..|+++ -.++.+....+.-+|-.++.+++
T Consensus 94 -----------------v~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lg 149 (412)
T PF01770_consen 94 -----------------VLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLG 149 (412)
T ss_pred -----------------HHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888887773 456677766666655 45556666655556656555444
Q ss_pred heecc--cccchhhhHHHHHHHHHHHHHH
Q 008632 214 IYIQD--NLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 214 ~~l~~--~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
=.+.. ..++....++......+++++.
T Consensus 150 Qllvs~~~~sy~~L~~isl~~~~~a~~~~ 178 (412)
T PF01770_consen 150 QLLVSFGGVSYFQLNYISLASVSLALLIA 178 (412)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 33332 2345556566666555555443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.2e-06 Score=88.44 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=117.0
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCc
Q 008632 365 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 444 (558)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (558)
+.++.+..+...++.|+.+.+.++.=|+ .++.+|..+..++.+..++.
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR~-----------~v~~vG~~iW~~Av~~~~fs--------------------- 118 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNRK-----------RVIAVGIFIWTLAVFASGFS--------------------- 118 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcc-----------eEEeeHHHHHHHHHHHHHHH---------------------
Confidence 4566667778888899999985554333 35888999988888777765
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccc
Q 008632 445 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 524 (558)
Q Consensus 445 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~ 524 (558)
...|.+.++-.+.|+|+....+..++++++.+|.+.|+.++++++++..+|+.+|......+.+.+. .|
T Consensus 119 -~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W----- 187 (493)
T KOG1330|consen 119 -NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW----- 187 (493)
T ss_pred -HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce-----
Confidence 4668888999999999999999999999999999999999999999999999999888888865432 24
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 525 NRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 525 ~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
++.|.+.+.++++.+++..++.++-+
T Consensus 188 -----r~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 188 -----RWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred -----EEEEEeehHHHHHHHHHHHhhccCcc
Confidence 46788899999999888888877644
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-05 Score=80.23 Aligned_cols=167 Identities=20% Similarity=0.211 Sum_probs=118.4
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhh---cchhHHHHH-HHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSF---LGRFRTIVV-ASL 112 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~~-~~~ 112 (558)
+.+..+..+.+...+++..=.+++++|++ .+|.+.+-.+.+-...=+.+.+.+|+.|..+||. +||||-++. +.+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 55555666666677777666788888887 7899998888777776777888899999999964 388776655 456
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 113 IYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
...++.++...++++...+ |++.-.+. .......++++-.+.=++.-.....+-++.+|+...+++ +-
T Consensus 111 ~i~~~l~Lig~aaDig~~l---gd~~~~~~----~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~ 178 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLL---GDNERKPV----KPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----KT 178 (498)
T ss_pred HHHHHHhhhhhHhhhhHHh---cCCccccc----chHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----hh
Confidence 7788888888887754332 22222211 012344566666666677777788888999999865541 22
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhee
Q 008632 193 SFFNWWYFGISFGANSTILVVIYI 216 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l 216 (558)
++.+++...+.+|..+|...+++.
T Consensus 179 ~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 179 RANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred ccchhHHHHHHhcceeeeeccccc
Confidence 288899999999999999888744
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.7e-05 Score=59.54 Aligned_cols=65 Identities=31% Similarity=0.298 Sum_probs=54.7
Q ss_pred HHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 47 VAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 47 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
++...+...+.++++.|++ +.|+|..++|++.+..-+...+++++.|+++||+ ||++.++....+
T Consensus 10 f~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 3344445567789999998 5899999999999999999999999999999999 888887766544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=86.49 Aligned_cols=138 Identities=12% Similarity=-0.062 Sum_probs=107.8
Q ss_pred HhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCC
Q 008632 63 YLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAK 142 (558)
Q Consensus 63 yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (558)
+.++.+|+++.+.|++.....++..++..+.+++.+|+ +.|+++.++.++.+++........+-. |.+.
T Consensus 278 ~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~----------~~~~ 346 (468)
T TIGR00788 278 ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRW----------NLAF 346 (468)
T ss_pred EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecc----------cccc
Confidence 33467999999999999999999999999999999998 999999999888888776543211000 0000
Q ss_pred CCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccccc
Q 008632 143 SCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLN 221 (558)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 221 (558)
. -.+.+.+...-++.+++.+....+...++.+..|++. +++.++++....++|..+++.+++.+.++.|
T Consensus 347 g----i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 347 G----ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred C----CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 0112334455667788888888888999999999998 9999999999999999999999999988776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0095 Score=63.68 Aligned_cols=167 Identities=9% Similarity=0.046 Sum_probs=96.3
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCC-----hHHHHHHHHHHHHHHHHH-HHHHHHHhHhhcchhHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGES-----TATAAAAVNVWSGTASLL-PLLGAFLADSFLGRFRTIVV 109 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-----~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grr~~~~~ 109 (558)
++.++.+...-++..+.|+.+-+ ++|.+..+ .....++-+...+...+. .++-+++++|+ +|++.+..
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 35555566666666666654444 67777663 345666666554544444 78889999998 99999888
Q ss_pred HHHHHHHHHHHHHHHHHhh--hccccc-ccCCCCCCCCCCCch-------hHHHHHHHHHHHHHccccccc-cccccccc
Q 008632 110 ASLIYILGLSMMTLLALIT--LLSSSD-CQNNNTAKSCSPHHF-------QIIVFIFSLYLVAIGQGGHKP-CTQAFGAD 178 (558)
Q Consensus 110 ~~~~~~i~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~l~gig~g~~~~-~~~~~~~~ 178 (558)
....+....++.++.-.+. .+++.. |++.-.. .|.+. +.|...+.-+...+=...... .-+++..|
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~---~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSL---LPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhh---cchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7666666666655542210 111100 1100000 00000 011111111111111112222 56788999
Q ss_pred CCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheec
Q 008632 179 QFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQ 217 (558)
Q Consensus 179 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 217 (558)
.++.++ -.|.++++..+.|+|..+++.+..++.
T Consensus 157 i~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 157 ITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred cCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 889999999999999999998888776
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.8e-05 Score=83.19 Aligned_cols=172 Identities=11% Similarity=0.006 Sum_probs=132.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHH
Q 008632 44 GVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTL 123 (558)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~ 123 (558)
++.++..++.-.+.+++--+++ +.+-...--|........+-.+.-++.++|-.|+ |+-+++..++....+=++..+.
T Consensus 378 ~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~ 455 (618)
T KOG3762|consen 378 FVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSY 455 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHH
Confidence 3334444444445566655665 5565555556555666666777888889999999 9999999998888888887777
Q ss_pred HHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHH-
Q 008632 124 LALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGI- 202 (558)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~- 202 (558)
..+ .|..+..-+++|+..+.++.++.++++...|++- |..+-++.+...
T Consensus 456 L~n------------------------~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~ 505 (618)
T KOG3762|consen 456 LQN------------------------PWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFH 505 (618)
T ss_pred hcC------------------------chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhc
Confidence 644 9999999999999999999999999999999998 888888866554
Q ss_pred HHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcce
Q 008632 203 SFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTY 247 (558)
Q Consensus 203 ~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 247 (558)
.+|-.+|.+++|.+.+.+|-+..|.+.++..++.++.+....+..
T Consensus 506 GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 506 GLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred ccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 689999999999999999988888877776666655555444333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=79.35 Aligned_cols=106 Identities=9% Similarity=0.097 Sum_probs=78.4
Q ss_pred HHHHHHHHhhhhhhhhh-hccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHH
Q 008632 372 GIGIITFIPIYDCIFVP-ITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWW 450 (558)
Q Consensus 372 ~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (558)
........++.+++.|+ ++||+ .+..|.++..++.+.++... .....
T Consensus 60 ~~~~~~~~~~~G~laDr~~G~r~-----------~~~~g~~~~~~g~~~~~~~~---------------------~~~~l 107 (489)
T PRK10207 60 AALVYGLISIGGYVGDHLLGTKR-----------TIVLGAIVLAIGYFMTGMSL---------------------LKPDL 107 (489)
T ss_pred HHHHHHHHhhHHHhhhhccchHH-----------HHHHHHHHHHHHHHHHHHhc---------------------cchhH
Confidence 33444555667777666 55553 58888888888877766531 11223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 451 LIPQYLLCGIADVFTIVGLQEFFYDQIPKE--LKSFGLSIYMSVLGVGGFLSSILVSIINE 509 (558)
Q Consensus 451 ~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~~g~~ig~~~~~~i~~ 509 (558)
+.+..++.++|.+...+...+++.+++|++ +|+.+.+++.+..++|..+|+.+.|++.+
T Consensus 108 l~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 108 IFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888777778999999887 45788999999999999999999999975
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00049 Score=72.67 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=87.0
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcc
Q 008632 366 SLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIP 445 (558)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (558)
.+......+..+.....+.+.|+++-| +.+..+++..++..++.++.
T Consensus 66 ~I~s~F~ysYal~qIp~GlLaDrlG~K-----------~vL~l~~l~Wsl~t~L~~fa---------------------- 112 (511)
T TIGR00806 66 EIIPVLPYSHLAVLVPVFLLTDYLRYK-----------PVLVLQALSFVCVWLLLLLG---------------------- 112 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence 334444555566666666665555544 46888888888888877775
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008632 446 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 508 (558)
Q Consensus 446 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~ 508 (558)
.+.+.+.+.-++.|++++... ....++.+.+|++.|+++.|+.+....+|.++++.+++.+.
T Consensus 113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999999988 77789999999999999999999999999999999999853
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.049 Score=57.62 Aligned_cols=191 Identities=14% Similarity=-0.018 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHH
Q 008632 40 SFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLS 119 (558)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~ 119 (558)
+.+....++.+.+-=......+.|+.+-+.-+-.-.+.....-.+...++.+..|.+.||. .|.+++..+.+..-+..+
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHH
Confidence 3344444444444434445566677766554544455555555666777788889999998 999998887665433333
Q ss_pred HHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHH
Q 008632 120 MMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWY 199 (558)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 199 (558)
............. ++. .+........+.+..++.++..=.......++--|+...=..+++..+.+.-+...
T Consensus 84 ~s~~~~~~l~~~~------~~~--~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mR 155 (432)
T PF06963_consen 84 ASCALFLLLLSYP------SSS--SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMR 155 (432)
T ss_pred HHHHHHHHHHhCC------ccc--cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHH
Confidence 3222111000000 000 00001112222222233333332233333444455543211111111333333333
Q ss_pred HHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHH
Q 008632 200 FGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVL 239 (558)
Q Consensus 200 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 239 (558)
=.=.+.-+++|++.|.+....+......+.+...+++.++
T Consensus 156 RIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 156 RIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 2224678899999999998888776666555555544443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.8e-05 Score=80.66 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=96.8
Q ss_pred HHHHHhhhhHHHHHHHhcc----c-----cCCChHHHHHHHHHHHHHHHHHHHHH----HHHhHhhcchhHHHHHHHHHH
Q 008632 48 AERFAYYGISSNLITYLTG----Q-----LGESTATAAAAVNVWSGTASLLPLLG----AFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 48 ~~~~~~~~~~~~l~~yl~~----~-----~~~s~~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Grr~~~~~~~~~~ 114 (558)
+....+|.+...++.++.. + .|+. ...+++.+.-.+...+..++. +++.||+ +..+.+.+++++.
T Consensus 283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~ 360 (500)
T PRK09584 283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLC 360 (500)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHH
Confidence 4445556666666665442 1 1111 113444455554555555555 5666665 6678888899999
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
+++.+.+.+...... . ....+.+.+.+..+++++|.+...|...+++.+..|++. |+++
T Consensus 361 ~l~f~~l~~~~~~~~----------~-----~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~ 419 (500)
T PRK09584 361 SGAFLVLPLGAKFAN----------D-----AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFI 419 (500)
T ss_pred HHHHHHHHHHHHhcC----------C-----CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHH
Confidence 999988877654110 0 011335678889999999999999999999999999988 9999
Q ss_pred hhHHHHHHHHHHHhhhhhh
Q 008632 195 FNWWYFGISFGANSTILVV 213 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~ 213 (558)
+|.+..+..+|..++..+.
T Consensus 420 ~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 420 MGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9998877777766665554
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0001 Score=82.39 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=92.2
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH----HHhh-hhhh----
Q 008632 364 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIK----RLET-AKEY---- 434 (558)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~----~~~~-~~~~---- 434 (558)
.+.+.+...++..+..++...+.++..||+ .+++|.++++++.+++++..-. +.+. ....
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~-----------~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGTKLHRPI-----------VIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhcccCcce-----------EEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 345556666777777777777755555443 4788888888888877664210 0000 0000
Q ss_pred ---------ccCCC--------CCCC-c--cchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHH
Q 008632 435 ---------GLIDK--------PNVT-I--PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLG 494 (558)
Q Consensus 435 ---------~~~~~--------~~~~-~--~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 494 (558)
+..+. .+.. + ...+..++++-++.|+|.+...+...+++.|.+|++.|+.+.|+.+....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 00000 0000 0 11355667788899999998877777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 008632 495 VGGFLSSILVSIINEA 510 (558)
Q Consensus 495 ~g~~ig~~~~~~i~~~ 510 (558)
+|..+|+.+++++.+.
T Consensus 219 iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQI 234 (633)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 9999999999998754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00024 Score=76.51 Aligned_cols=136 Identities=16% Similarity=0.109 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhhhhhhhhhh-ccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchh
Q 008632 370 FIGIGIITFIPIYDCIFVPI-TRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSV 448 (558)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (558)
.......+..++.+++.||+ +||+ .+..|.++..++.++.+... ...
T Consensus 53 ~~~~~~~l~~ligG~LaDRilGrrr-----------~iliG~il~~lg~lll~~~~---------------------~~~ 100 (493)
T PRK15462 53 AYCSLVYVTPILGGFLADKVLGNRM-----------AVMLGALLMAIGHVVLGASE---------------------IHP 100 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHH-----------HHHHHHHHHHHHHHHHHHhh---------------------cch
Confidence 33344455566777777776 4443 47788888777765444211 111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccccc
Q 008632 449 WWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE--LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR 526 (558)
Q Consensus 449 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~ 526 (558)
..+.+...+..+|.+...+...+++.|..|++ +|+.+.++.+...++|+.++|.+.+++.+.. +|
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw------- 167 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW------- 167 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch-------
Confidence 22333444555666665565567889999986 7999999999999999999999999996421 23
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008632 527 AHLDYFYWLLAALSAGGLLAFLYFAKS 553 (558)
Q Consensus 527 ~~~~~~~~~~a~~~~i~~~~~~~~~~~ 553 (558)
.+.|.+.+..++++++.+++..|+
T Consensus 168 ---~~~F~iaaigm~l~li~~~~~~~~ 191 (493)
T PRK15462 168 ---AMGFGLAAVGMIAGLVIFLCGNRH 191 (493)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456666655555555555544433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0078 Score=61.09 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=87.8
Q ss_pred cCCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhH-----hhcchhHH
Q 008632 32 NSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLAD-----SFLGRFRT 106 (558)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laD-----r~~Grr~~ 106 (558)
.+...+.+..+++..+.+..- +++...+|..++ .-|.|-++.+.....+ .=...-++-..+.| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 344557778888888877654 466676666666 5677877766443332 12233455566777 88 99987
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChh
Q 008632 107 IVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ 186 (558)
Q Consensus 107 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 186 (558)
-++= .-+.+|.++..++-.+.... .+|+.. .+...+....++.-+..+.=-.++=...-.+..+++
T Consensus 101 Wvvp-~q~llG~~mllLs~~v~~~~---g~ng~~--------p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~-- 166 (510)
T KOG3574|consen 101 WVVP-CQYLLGLFMLLLSYLVDRGL---GGNGGL--------PNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN-- 166 (510)
T ss_pred eeee-hHHHHHHHHHHHhhCCCccc---ccCCCC--------cchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh--
Confidence 5442 22344444444443211100 111111 122223223333334433322333333345556666
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhhhhhee
Q 008632 187 ERRAKSSFFNWWYFGISFGANSTILVVIYI 216 (558)
Q Consensus 187 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 216 (558)
.|-+......+.+.|.+++..+.-.+
T Consensus 167 ----lgyaST~q~Vg~~~GyfL~~~ifLaL 192 (510)
T KOG3574|consen 167 ----LGYASTCQSVGQTAGYFLGNVVFLAL 192 (510)
T ss_pred ----cCchhHHHHHHHhhhHHhhcceeeEe
Confidence 78888888888888888887665444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00029 Score=76.91 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=89.8
Q ss_pred CcchhhHHHHHHHHHHHHhh-hhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYY-GISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
.++.......+..++.+..+ .+..+.+.. -+..|.+... .+......+...++..+++++.||+ |||+.++.+.+.
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 44555555555555555544 344444444 4455665443 4445556666777788889999999 999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
+.++.++++.......... .+.. ......+....+....-..+..+....+.+|.+|.+- |++
T Consensus 369 m~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~ 431 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYP----------NSSK-GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSK 431 (513)
T ss_pred HHHHHHHHHHHHHHhccCC----------Cccc-chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hhh
Confidence 9999998887644211000 0000 0112222222222233333344666678899999988 888
Q ss_pred hhhHHHHHHHHH
Q 008632 194 FFNWWYFGISFG 205 (558)
Q Consensus 194 ~~~~~~~~~~~g 205 (558)
+.++......+.
T Consensus 432 ~~s~~~~~n~~~ 443 (513)
T KOG0254|consen 432 GASLAVAVNWLW 443 (513)
T ss_pred hHHHHHHHHHHH
Confidence 877755444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00031 Score=71.78 Aligned_cols=138 Identities=19% Similarity=0.184 Sum_probs=104.9
Q ss_pred hHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008632 56 ISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDC 135 (558)
Q Consensus 56 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 135 (558)
+-++++.|+.+..|.+..+.....+.+..+.+++..++-++-.|+ ...|.+....++..+-.+...+.++
T Consensus 255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~g--------- 324 (422)
T COG0738 255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIGG--------- 324 (422)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 347888999988999999999999999999999998888888898 8888877766555555555555432
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhe
Q 008632 136 QNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIY 215 (558)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 215 (558)
.. -..+.++.|...+...|...+...+..|++.. .+.+ + -...-+|+++-|.+-|+
T Consensus 325 ---------------~v-~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~--~-l~maivGGAiiP~l~G~ 380 (422)
T COG0738 325 ---------------VV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG--L-LVMAIVGGAIIPPLQGV 380 (422)
T ss_pred ---------------hH-HHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce--e-eeeheecchHHHHHHHH
Confidence 22 33446677888999999999999999995431 2222 2 22345899999999999
Q ss_pred ecccccchhhhH
Q 008632 216 IQDNLNWALGFG 227 (558)
Q Consensus 216 l~~~~g~~~~f~ 227 (558)
+.|..|-...+.
T Consensus 381 i~d~~g~~~~~~ 392 (422)
T COG0738 381 IADMFGIQLTFL 392 (422)
T ss_pred HHHhhhhHHHHH
Confidence 999998776665
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=70.61 Aligned_cols=138 Identities=14% Similarity=0.260 Sum_probs=95.0
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCC
Q 008632 364 AASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVT 443 (558)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (558)
..++...+.+......|+.+++.|.++||. .++.|.++..++.++.+..
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA-------------------- 128 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATA-------------------- 128 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcC--------------------
Confidence 345666677777777889999988888886 4788888888888887754
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccc
Q 008632 444 IPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADN 523 (558)
Q Consensus 444 ~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~ 523 (558)
.+...++.+..+.|+|.+...... ..++|..|.+.|..+.++.....-....+++.+...+.. +.+|
T Consensus 129 --~~~~~~iag~~l~GvgaG~~~~~~-~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W---- 195 (599)
T PF06609_consen 129 --QNMNTFIAGMVLYGVGAGVQELAA-LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW---- 195 (599)
T ss_pred --CcHHHHHHHHHHHHHhhHHHHHHH-HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc----
Confidence 456678888899999887765544 458899999999988877665544444444554444321 2356
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhh
Q 008632 524 LNRAHLDYFYWLLAALSAGGLLAFLYFA 551 (558)
Q Consensus 524 ~~~~~~~~~~~~~a~~~~i~~~~~~~~~ 551 (558)
+|.|++.+.+..++++..+++.
T Consensus 196 ------Rw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 196 ------RWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666655555554443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0019 Score=70.88 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=86.2
Q ss_pred HhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHH
Q 008632 379 IPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLC 458 (558)
Q Consensus 379 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 458 (558)
.++.+.+.|++++| +.+.+|.++..++.++.+.... + ....+.+.+.+..++.
T Consensus 78 ~lp~G~L~Dr~G~R-----------~vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~ 130 (591)
T PTZ00207 78 LLPYSFIYDYLGPR-----------PIFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLM 130 (591)
T ss_pred HHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHH
Confidence 33456665555555 4688899999888887776421 0 0013667777788888
Q ss_pred HHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHH
Q 008632 459 GIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFL-SSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLA 537 (558)
Q Consensus 459 g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~i-g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a 537 (558)
|+|.+...+.......+.+| +.||.+.|+......+|..+ ++...+++.+ +| ..++++.+
T Consensus 131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--------~~----------~~~fl~l~ 191 (591)
T PTZ00207 131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--------NT----------SAYFFFLM 191 (591)
T ss_pred HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hH----------HHHHHHHH
Confidence 99988776665567778887 67899999999999999986 4444444431 12 34566677
Q ss_pred HHHHHHHHHHHHhhcc
Q 008632 538 ALSAGGLLAFLYFAKS 553 (558)
Q Consensus 538 ~~~~i~~~~~~~~~~~ 553 (558)
.+.++..++.+.+.|.
T Consensus 192 vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 192 SFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHHHhheeC
Confidence 7776666666665543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0051 Score=67.23 Aligned_cols=132 Identities=16% Similarity=0.256 Sum_probs=97.8
Q ss_pred hhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccc
Q 008632 367 LQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPT 446 (558)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (558)
.+.+..++.+++..+.+.+.|+++||. ...+++++..++-+..++. .
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~-----------~~~~~~~~~~i~~~~~a~a----------------------~ 169 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKP-----------VLLVSLLLFIIFGILTAFA----------------------P 169 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHH-----------HHHHHHHHHHHHHHHHHHh----------------------C
Confidence 344455556666666666666656654 5777777777776666654 6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccccc
Q 008632 447 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNR 526 (558)
Q Consensus 447 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~ 526 (558)
+++.+.+.-++.|++..........+.+|..+++.|+.+..+ ......++.+++..++++.. +|
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W------- 233 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW------- 233 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH-------
Confidence 788899999999999998877777899999999999999999 88888999999999988873 55
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Q 008632 527 AHLDYFYWLLAALSAGGLLAFLYFA 551 (558)
Q Consensus 527 ~~~~~~~~~~a~~~~i~~~~~~~~~ 551 (558)
++.+++......+.++. +++.
T Consensus 234 ---r~~~~~~~~~~~~~~~~-~~l~ 254 (521)
T KOG0255|consen 234 ---RWLFWIISIPSGLFLLL-WFLP 254 (521)
T ss_pred ---HHHHHHHHHHHHHHHHH-HHcc
Confidence 45666666666655554 4444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00025 Score=73.45 Aligned_cols=126 Identities=16% Similarity=0.088 Sum_probs=92.8
Q ss_pred HHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHccccc
Q 008632 89 LPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGH 168 (558)
Q Consensus 89 ~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~ 168 (558)
+-.+..++.|++ |||+.-+.+.+++++..+.++..-+ + . . .....+...-+.+-++.-+-
T Consensus 364 Gyw~tv~~id~i-GRk~iq~~GF~~~~i~~~~~~~~y~--~-~--------------~--~~~Gf~v~y~l~~ff~NFGP 423 (538)
T KOG0252|consen 364 GYWFTVYFIDII-GRKYIQLMGFFIMTIFFFVIAGPYN--Q-L--------------E--NTIGFVVLYSLTFFFGNFGP 423 (538)
T ss_pred ceeEEEEEeehh-hhHHHHHhhHHHHHHHHHHHcCCcc--c-c--------------c--ccCceeehHHHHHHHHhcCC
Confidence 555667789998 9999999999999988888776532 0 0 0 11111222223334455555
Q ss_pred ccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecc-----cccchhhhHHHHHHHHHHHHHH
Q 008632 169 KPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD-----NLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
....-.+-+|.||.+- |+..-++.-...-.|+++|.....++.+ ..+.+.+|++.+.++++..++-
T Consensus 424 n~ttfivpaE~FParv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T 494 (538)
T KOG0252|consen 424 NATTFIVPAEIFPARV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT 494 (538)
T ss_pred CceeEEeehhhchHHH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee
Confidence 5566677799999988 9999999888888999999999999988 7788999998888877776553
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0088 Score=63.55 Aligned_cols=160 Identities=13% Similarity=0.070 Sum_probs=108.8
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCc
Q 008632 365 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 444 (558)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (558)
++..+...++..++.|..+....+..+ -++-+++|.+++.++-++++.+... .
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~----------~k~Pli~s~ii~~~g~llY~~l~~~-----------------~ 126 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGS----------VKKPLIVSFLIAIIGNLLYLALAYV-----------------P 126 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCC----------cccCHHHHHHHHHHHHHHHHHHHhc-----------------c
Confidence 455555667777777777665333221 0122899999999999998555321 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccc
Q 008632 445 PTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNL 524 (558)
Q Consensus 445 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~ 524 (558)
....+++.++.++.|+|.+.....- .|++...-.+.|.++++..+..+-+|.++||.+...+.-+..++ ..|.+. +
T Consensus 127 ~~~~y~mL~~R~l~Gvg~~n~a~lR-~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G--~~i~~~-~ 202 (488)
T KOG2325|consen 127 NGVKYLMLVARILTGVGVGNFAVLR-AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG--FMILPG-L 202 (488)
T ss_pred cchHHHHHHHHHHcCcCcccHHHHH-HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc--eEEcCc-c
Confidence 1267888899999999987765554 68888777777888888877777788888887777665432211 122221 3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 525 NRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 525 ~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
.-|-+...-|+.+.++++.+++..++.+|-.
T Consensus 203 ~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 203 IFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred eEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 3355666778899999999999999888753
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0067 Score=54.73 Aligned_cols=103 Identities=9% Similarity=0.055 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHH
Q 008632 79 VNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSL 158 (558)
Q Consensus 79 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (558)
.++......+..+++..+.+++ |.|+.++++.+.+.+-.+.... .+.+.++++-
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-------------------------~~~~~l~~~s 96 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-------------------------PNSYTLYPAS 96 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-------------------------hhHHHHHHHH
Confidence 3444455566667778889998 9999999998877765554432 2367889999
Q ss_pred HHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhh
Q 008632 159 YLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV 213 (558)
Q Consensus 159 ~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 213 (558)
++.|+|.+..+.....++.+..++++ |++..+++....+.+..+|.++.
T Consensus 97 ~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 97 ALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776 77777776666666666665443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0033 Score=63.85 Aligned_cols=131 Identities=9% Similarity=0.063 Sum_probs=103.7
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008632 58 SNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLG--RFRTIVVASLIYILGLSMMTLLALITLLSSSDC 135 (558)
Q Consensus 58 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 135 (558)
....-+..+.+|+++.+.|-+.+...+.+.+.+...+...||. + -+-.+..+++...-..++...+..
T Consensus 282 ~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~-~~~~~a~l~~~l~~~vP~~llls~~~~--------- 351 (451)
T KOG2615|consen 282 NTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRY-KGNIKAVLLFSLLLIVPAFLLLSLART--------- 351 (451)
T ss_pred hhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccccccc-ccchhhHHHHHHHHHHHHHHHHhcccc---------
Confidence 3333344678999999999888888888888888778888887 4 445555566666666666666544
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhe
Q 008632 136 QNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIY 215 (558)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 215 (558)
...++.+..+..+..+...++...++....|.++ ||...|+......++-++||+++|.
T Consensus 352 ---------------~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~Sl~alaRaiGPlv~g~ 410 (451)
T KOG2615|consen 352 ---------------PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRSLGALARAIGPLVSGV 410 (451)
T ss_pred ---------------chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHHHHHHHHHhhhhhhhe
Confidence 4568888888888888888999999999999888 9999999999999999999999988
Q ss_pred eccc
Q 008632 216 IQDN 219 (558)
Q Consensus 216 l~~~ 219 (558)
+..+
T Consensus 411 i~~W 414 (451)
T KOG2615|consen 411 IFSW 414 (451)
T ss_pred eEEE
Confidence 8653
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.004 Score=66.56 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=116.2
Q ss_pred CcchhhHHHHHHHHHHHHh-hhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHH-HHhHhhcchhHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAY-YGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGA-FLADSFLGRFRTIVVASL 112 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grr~~~~~~~~ 112 (558)
+.|..+.+....++...-- -+..-.++.|++..++++.++.+...+.......++.++.. .+.-.+ |-|+.+..|++
T Consensus 238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~ 316 (463)
T KOG2816|consen 238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLL 316 (463)
T ss_pred CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHH
Confidence 4455555444443322221 12221446789999999999999999999999999999888 555555 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 113 IYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 113 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
...+...+.+++.. .|+++....+.++. +...+...++.+.+.+.++ +|
T Consensus 317 ~~~~~~~~~af~~~------------------------~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g 365 (463)
T KOG2816|consen 317 SEFLQLLLFAFATE------------------------TWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QG 365 (463)
T ss_pred HHHHHHHHHHHhcc------------------------chhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------cc
Confidence 99999999999854 77777776665544 5567888999999999988 99
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheec
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQ 217 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~ 217 (558)
+++++.+....+...++|.+-+.+.
T Consensus 366 ~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 366 KVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred chhhHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999999999998877653
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0077 Score=48.07 Aligned_cols=69 Identities=17% Similarity=0.082 Sum_probs=61.2
Q ss_pred hHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008632 56 ISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLAL 126 (558)
Q Consensus 56 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~ 126 (558)
+++ +.+.++++.++|..+.+++.+.-.+++.++.+...++.++. .+++.+..+.+...+..+.+++.++
T Consensus 11 yTp-lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 11 YTP-LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHh-HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344 44567889999999999999999999999999999999997 8899999999999999999998765
|
Note that many members are hypothetical proteins. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00035 Score=76.24 Aligned_cols=178 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHH-HHHHHHHHHHHHhHhh-cchhHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSG-TASLLPLLGAFLADSF-LGRFRTIVVASLIY 114 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~ 114 (558)
+.+....+...++.+..-++.+++|-|++.+|++++.+++++.+...+ +..++.+++|++..|+ ++.|++.....+..
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~ 384 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS 384 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence 344444556667777788899999999999999999999999877666 5569999999999987 23455444444333
Q ss_pred HHHHHH---H--HHHHHhhhc-----------------ccccccCCC-------CCCCCCCC-chhHHHHHHHHHHHHHc
Q 008632 115 ILGLSM---M--TLLALITLL-----------------SSSDCQNNN-------TAKSCSPH-HFQIIVFIFSLYLVAIG 164 (558)
Q Consensus 115 ~i~~~~---~--~~~~~~~~~-----------------~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~l~gig 164 (558)
.+..+. . .-.++.+.- ...+|.+.+ ....|+.+ ..+...+.+..++..+.
T Consensus 385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~ 464 (539)
T PF03137_consen 385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF 464 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence 333322 1 111111110 111132211 24556644 34555666666665555
Q ss_pred ccccccccccccccCCCCCChhhhhhhhhhhhHHHHHH-HHHHHhhhhhhheecccc
Q 008632 165 QGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGI-SFGANSTILVVIYIQDNL 220 (558)
Q Consensus 165 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~l~~~~ 220 (558)
.+..........-...|+++ |..++|+..... -+|.+-||++.|.+.|..
T Consensus 465 ~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 465 TFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ---------------------------------------------------------
T ss_pred HHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 55555555555667788887 999999976665 578999999999998853
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0091 Score=66.21 Aligned_cols=177 Identities=19% Similarity=0.210 Sum_probs=112.5
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHH-HHHHHHHHHHhHhh-cchhHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTA-SLLPLLGAFLADSF-LGRFRTIVVASLIY 114 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~G~laDr~-~Grr~~~~~~~~~~ 114 (558)
+.....++...++...+-++.+++|-|+.++||.++..+..+.+...+.. .++..++|++.-|+ +.-|.+....++..
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~ 471 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS 471 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence 55566667788899999999999999999999999999999987766654 48889999999876 24444444433333
Q ss_pred HHHHHH---HHHH--HH------------hhhccc---------cc-----------ccCCCC-----------------
Q 008632 115 ILGLSM---MTLL--AL------------ITLLSS---------SD-----------CQNNNT----------------- 140 (558)
Q Consensus 115 ~i~~~~---~~~~--~~------------~~~~~~---------~~-----------~~~~~~----------------- 140 (558)
.+..+. ..+. .+ -+.+.. ++ |++++-
T Consensus 472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~ 551 (735)
T KOG3626|consen 472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS 551 (735)
T ss_pred HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence 333322 1110 00 001111 01 333211
Q ss_pred -----CCCCC--C----------------C-chhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhh
Q 008632 141 -----AKSCS--P----------------H-HFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFN 196 (558)
Q Consensus 141 -----~~~~~--~----------------~-~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 196 (558)
++.|. + . ..++..+++..++..+..+........++-...++|+ |..++|
T Consensus 552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG 625 (735)
T KOG3626|consen 552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALG 625 (735)
T ss_pred CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhH
Confidence 22333 2 2 2334444444444444444444566666778888888 999999
Q ss_pred HHHHHHH-HHHHhhhhhhheeccc
Q 008632 197 WWYFGIS-FGANSTILVVIYIQDN 219 (558)
Q Consensus 197 ~~~~~~~-~g~~~~~~~~~~l~~~ 219 (558)
+..+... +|.+-+|++.|++.|.
T Consensus 626 ~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 626 FQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred HHHHHHHHHhcCCchHhhhhhHhh
Confidence 9777764 7999999999998763
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.014 Score=60.74 Aligned_cols=185 Identities=13% Similarity=0.012 Sum_probs=104.8
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcch-hHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGR-FRTIVVASLIYI 115 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~~~~~~~~~ 115 (558)
+.+..++.+..+....++++...+-.-+. .-|.+...+|.+.......++++.++.|.++||. +. |.+..+......
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~ 343 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFAL 343 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHH
Confidence 44444444444444444444443332232 4466778889999999999999999999999998 54 444444444444
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCC-CCCChhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQF-DAQNPQERRAKSSF 194 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~ 194 (558)
++......... . ....+.++..-.+.|....+..|...-+..|.. |..+ +..
T Consensus 344 v~~~~l~~~t~----~----------------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tS 396 (480)
T KOG2563|consen 344 VGTLMLLTCTL----F----------------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTS 396 (480)
T ss_pred HHHHHHHHhhc----c----------------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------ccc
Confidence 44322222111 0 012344555566678888888898888888886 5443 444
Q ss_pred hhHHHHHHHHHHHhhhhhhheeccccc----chhhhHHHHHHHHHHHHHHHHcCcceEEe
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLN----WALGFGIPCAFMVAALVLFLLGTKTYRFS 250 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g----~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 250 (558)
.|+.+...++-+.+=..+-+...+..+ +...-+......++..++..+.++++++.
T Consensus 397 sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 397 SGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred ceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 555555555544444455555555444 33233333444444444444555555443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.11 Score=54.94 Aligned_cols=140 Identities=12% Similarity=0.053 Sum_probs=110.4
Q ss_pred hhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008632 55 GISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSD 134 (558)
Q Consensus 55 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 134 (558)
+....+..|++.+ |+++...+..-+...+.+..+.....++-+|+ |-.|+=+.+.........++..+.-.+.
T Consensus 276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~----- 348 (432)
T PF06963_consen 276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG----- 348 (432)
T ss_pred cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 4556788899877 99999999999999999999999999999999 9999888888776666666554422110
Q ss_pred ccCCCCCCCCCC-CchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhh
Q 008632 135 CQNNNTAKSCSP-HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVV 213 (558)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 213 (558)
+| +......+..+.++.-+|.=++--+...++-|..|+++ ||...+..+...++.-.+-.+++
T Consensus 349 ----------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 349 ----------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred ----------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12346667777777778877778888999999999888 99999999999999988888666
Q ss_pred heec
Q 008632 214 IYIQ 217 (558)
Q Consensus 214 ~~l~ 217 (558)
-.+.
T Consensus 413 ii~~ 416 (432)
T PF06963_consen 413 IIFP 416 (432)
T ss_pred hccC
Confidence 5443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.21 Score=54.46 Aligned_cols=172 Identities=16% Similarity=0.052 Sum_probs=90.0
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+.+..++++.-+....|- ....-.+...+|-+....+++++.+.++..++..++|+++++. -|+.. ..-..+..+
T Consensus 17 ~~l~~~~f~sg~~~L~yE---v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~-~~e~~i~l~ 91 (521)
T PRK03612 17 ALLLAAVFVCAACGLVYE---LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFV-AVELLLALL 91 (521)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHH-HHHHHHHHH
Confidence 334334444433444443 3333445556788999999999999999999999999887554 33322 221111111
Q ss_pred H---HHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 117 G---LSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 117 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
+ ..+......... .....++...++.++..|+..|....+..+... ++ -++
T Consensus 92 ~~~~~~ll~~~~~~~~-------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~ 145 (521)
T PRK03612 92 GGLSALILYAAFAFQG-------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGH 145 (521)
T ss_pred HHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhh
Confidence 1 111111110000 001122333444566666766665554443222 12 455
Q ss_pred hhhHHHHHHHHHHHhhhhhhheec-ccccc-hhhhHHHHHHHHHHHHH
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQ-DNLNW-ALGFGIPCAFMVAALVL 239 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~-~~~g~-~~~f~~~~~~~~~~~~~ 239 (558)
..+-.+....+|+++|.++.+++. ..+|- +..+.++.+..+++++.
T Consensus 146 ~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 146 NVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 567777777889999988888654 35664 34444333333444333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.088 Score=54.88 Aligned_cols=124 Identities=17% Similarity=0.142 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChh---
Q 008632 404 QRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE--- 480 (558)
Q Consensus 404 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~--- 480 (558)
+.+..|.++..++.++...... ++...+....+.+.+++++.++|.+..-+...++..++.+++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~-------------~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAI-------------PPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHT-------------SSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHh-------------cchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 3577888888888877555421 001112345677888889999999999888888999998876
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 481 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 481 ~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
.|......+....++|..++....+++.+. .++...|.+.++.++++.+.++...++++.
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~ 128 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRK 128 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcC
Confidence 567777788899999999999998888642 233566777788888887777776666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.46 Score=53.27 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=84.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChh-
Q 008632 402 MLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE- 480 (558)
Q Consensus 402 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~- 480 (558)
..+.+..+.++..++.++.++... +............+++++.++|.+..-+...++..++.+++
T Consensus 53 ~~~tIl~~~ii~~lG~~llai~a~--------------~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~ 118 (654)
T TIGR00926 53 KFKTILYLSIVYVVGHALLSFGAI--------------PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ 118 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccC--------------cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc
Confidence 345677888887787766664310 00001122334556777888888888777778888888754
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 481 --LKSFGLSIYMSVLGVGGFLSSILVSIINEATSR-DGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 481 --~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
.|.....++..+.++|+.+++.+.+++.+..+. +.. .++...|.+.+++++++.++++...|+++
T Consensus 119 ~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~----------~~~~~aF~i~~i~m~ia~lvf~~g~k~y~ 186 (654)
T TIGR00926 119 LSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ----------DCYPLAFGVPAILMILALIVFMAGSKMYK 186 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC----------cchHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 466777888888889999998888888542110 001 12345677788888888777776665553
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.047 Score=57.78 Aligned_cols=133 Identities=15% Similarity=0.132 Sum_probs=96.0
Q ss_pred HHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHH
Q 008632 377 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYL 456 (558)
Q Consensus 377 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (558)
....+.+++.||+.++ ++.+..|.+++.++-++.+... ......+.+.+.
T Consensus 76 ~t~i~GG~laDr~LG~----------~~tI~lGail~~iGh~~L~~~~--------------------~~~~~gl~i~L~ 125 (498)
T COG3104 76 LTPIIGGWLADRVLGT----------RRTIVLGAILMAIGHLVLAISS--------------------VSGPGGLYIGLA 125 (498)
T ss_pred HHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHHHHhccc--------------------cccccHHHHHHH
Confidence 3344556665555443 3468889999999988777531 134556778888
Q ss_pred HHHHHHHHHhhhhhhhhhccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHH
Q 008632 457 LCGIADVFTIVGLQEFFYDQIPKE--LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYW 534 (558)
Q Consensus 457 l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~ 534 (558)
++.+|.+..-+...+++.++.|++ +|..+.+++.+.-++|+.++|.+.+++.+.. ++...|.
T Consensus 126 ~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~ 189 (498)
T COG3104 126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFG 189 (498)
T ss_pred HHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHH
Confidence 888999998666667788877754 3667778888889999999999999997532 2345677
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 008632 535 LLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 535 ~~a~~~~i~~~~~~~~~~~~~ 555 (558)
+.+.-+.++++.+++..|+.+
T Consensus 190 ~aavGm~~gl~~f~~~~r~~~ 210 (498)
T COG3104 190 LAAVGMIIGLVIFLLGRRHVK 210 (498)
T ss_pred HHHHHHHHHHHHHHHccchhc
Confidence 777777888888888777654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.29 Score=51.14 Aligned_cols=60 Identities=10% Similarity=0.019 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhee
Q 008632 151 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI 216 (558)
Q Consensus 151 ~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 216 (558)
.|.+++..+..|+..|..+.++...+.|..|+++ |..+++....+-++|..++.+++-.+
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6777777788899999999999999999888776 99999999988889888887665544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.078 Score=55.43 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=65.1
Q ss_pred cCCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhcccc-C----------------CChHHHHHHHHHHHHHHHHHHHHHH
Q 008632 32 NSGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQL-G----------------ESTATAAAAVNVWSGTASLLPLLGA 94 (558)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~----------------~s~~~~~~~~~~~~~~~~~~~~~~G 94 (558)
.+..+|.++.+..++++..++.+...-+.+.++.++. + .....-.|-+..+.+...+.+...-
T Consensus 274 ~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~ 353 (498)
T KOG0637|consen 274 LKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVE 353 (498)
T ss_pred HhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999998888888888888776431 1 1112234556677778889999999
Q ss_pred HHhHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 008632 95 FLADSFLGRFRTIVVASLIYILGLSMMTLL 124 (558)
Q Consensus 95 ~laDr~~Grr~~~~~~~~~~~i~~~~~~~~ 124 (558)
++.||+ |-|+.++.+...+.++..+..+.
T Consensus 354 ~l~~~~-g~r~~y~~~~~~f~~~~~~~gl~ 382 (498)
T KOG0637|consen 354 KLSRKF-GTRKRYWGGVNAFGLATGLAGLV 382 (498)
T ss_pred HHHHhc-CcceEEeehhHHHHHHHHHHhhh
Confidence 999999 86666666665556665555544
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.70 E-value=3.8 Score=41.01 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 447 SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSII 507 (558)
Q Consensus 447 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i 507 (558)
++|.+++..++=|+--+...+...--+.+..+++.|-.+|+.....-.+|-.++.++.-.+
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 4444444444444444444444444566778889999999988777777766665554333
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.9 Score=42.21 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=57.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChh
Q 008632 401 TMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKE 480 (558)
Q Consensus 401 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 480 (558)
++...+.+|.+...++..........+ ..+.++|.+.....+.+.+..........--.+.+|.
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~~---------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~- 127 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSGR---------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR- 127 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCc---------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-
Confidence 344567888888888876554432110 0124566666666666666665433332334578885
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008632 481 LKSFGLSIYMSVLGVGGFLSSILVSII 507 (558)
Q Consensus 481 ~rg~~~g~~~~~~~~g~~ig~~~~~~i 507 (558)
.||.+.|+.-....+++.+-..+...+
T Consensus 128 ~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 128 SRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred ccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 699999999998888888755554444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.62 E-value=2.4 Score=38.23 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=53.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008632 446 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIIN 508 (558)
Q Consensus 446 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~ 508 (558)
.+.+.+++.-++.|+|.+........++.+..+++.|++-.|+.-...+.+.++|..+.-.+.
T Consensus 87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777888889999999988877789999999999999999999999988888887766554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=92.39 E-value=12 Score=40.46 Aligned_cols=172 Identities=11% Similarity=0.073 Sum_probs=89.6
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccC---CChHHHHHHHHHHHH-HHHHHHHHHHHHhHhhcchhHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLG---ESTATAAAAVNVWSG-TASLLPLLGAFLADSFLGRFRTIVVA 110 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~ 110 (558)
.++.++.+.+.-++..+.|. +.= -+++.+= .++.....+-....+ ...+...+-.+++||+ +|.+++...
T Consensus 22 E~~k~~~l~~m~f~i~f~y~-~lR----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~ 95 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYT-ILR----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 34556666665555555442 221 2343321 233334444332222 4556677789999998 999998877
Q ss_pred HHHHHHHHHHHHHHHHh--hhccccc-ccCCCC--CCCCCC--CchhHHHHHHHHHHHH-HcccccccccccccccCCCC
Q 008632 111 SLIYILGLSMMTLLALI--TLLSSSD-CQNNNT--AKSCSP--HHFQIIVFIFSLYLVA-IGQGGHKPCTQAFGADQFDA 182 (558)
Q Consensus 111 ~~~~~i~~~~~~~~~~~--~~~~~~~-~~~~~~--~~~~~~--~~~~~~~~~~~~~l~g-ig~g~~~~~~~~~~~~~~~~ 182 (558)
...+....++.++.-.| ..+++.. +++... +..+.. .-.+.|...+.-++.- .|.-...-.-+++..|.++.
T Consensus 96 ~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~ 175 (491)
T PF03219_consen 96 IIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTV 175 (491)
T ss_pred HHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 66666666655544221 1222221 222111 000000 0000111111111111 11111112347788999988
Q ss_pred CChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheecc
Q 008632 183 QNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQD 218 (558)
Q Consensus 183 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 218 (558)
++ -.|.++++..+.|+|.+++..+..++.+
T Consensus 176 ~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 176 EE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 8899999999999999988877777666
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.5 Score=46.75 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccC---Chh
Q 008632 404 QRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQI---PKE 480 (558)
Q Consensus 404 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~---P~~ 480 (558)
.-+++|.++..++.+.++.... ...+.....+..++..+|..+..+..-+.+.|.. |.+
T Consensus 60 ~Y~~i~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~ 121 (433)
T PF03092_consen 60 PYMIIGWLLGAVSALVLALLPA------------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES 121 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence 3467777777666665555421 0122333445556667777776655555555554 444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008632 481 LKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKS 553 (558)
Q Consensus 481 ~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~ 553 (558)
||..++....+..+|++++..+.|.+.+..+ .+..|.+.+.+..+..+..+++.+|
T Consensus 122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~----------------~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG----------------PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC----------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 8888888889999999999999988875322 1223566666666665555555553
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.03 E-value=20 Score=36.74 Aligned_cols=141 Identities=15% Similarity=-0.015 Sum_probs=79.1
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCc
Q 008632 365 ASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTI 444 (558)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (558)
+.+-........+++++.+.+.|+++||+. .+.--++.+++++ .+ +
T Consensus 72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~-----------cl~~cily~~scl----~k-------------------~ 117 (354)
T PF05631_consen 72 AILFVAGFASSAIFGTFVGSLADRYGRKKA-----------CLLFCILYSLSCL----TK-------------------H 117 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHH-----------HHHHHHHHHHHHH----HH-------------------h
Confidence 445566677888999999999998888752 2222222333332 21 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhh-----hhhccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 008632 445 PTSVWWLIPQYLLCGIADVFTIVGLQE-----FFYDQIPKELKSFGLSIYM-SVLGVGGFLSSILVSIINEATSRDGGDS 518 (558)
Q Consensus 445 ~~~~~~~~~~~~l~g~g~~~~~~~~~~-----~~~~~~P~~~rg~~~g~~~-~~~~~g~~ig~~~~~~i~~~~~~~~~~~ 518 (558)
..+...++++-++.|++..+.....=+ .-.+-.|++..+...+... ..+.+-.+++..++-.+.+..+.++
T Consensus 118 ~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~--- 194 (354)
T PF05631_consen 118 SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP--- 194 (354)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC---
Confidence 356788888888999888876443222 2224467776666666555 3333334444444444444322111
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008632 519 WFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKS 553 (558)
Q Consensus 519 w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~ 553 (558)
-..|.....+.+++.++.....+|
T Consensus 195 -----------vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 195 -----------VAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred -----------cchHHHHHHHHHHHHHHHHhcccc
Confidence 124666666666666655544443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=90.93 E-value=26 Score=37.74 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 449 WWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEA 510 (558)
Q Consensus 449 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~ 510 (558)
..++..+++..+.....+++..++-++++.|..-|++|.+.|+..++|+.--..++-.+.|.
T Consensus 406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 33455666666777777888889999999999999999999999999998777666666663
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.33 E-value=22 Score=38.12 Aligned_cols=169 Identities=8% Similarity=0.008 Sum_probs=94.1
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCC---hHHHHHHHHHHHH-HHHHHHHHHHHHhHhhcchhHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGES---TATAAAAVNVWSG-TASLLPLLGAFLADSFLGRFRTIVVA 110 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~ 110 (558)
.++.+..+.+..++..+.|...- -+++.+.++ +.....+-...-+ .+.+..++-+++.++. .|.+++...
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence 35566666666555555443222 245555443 4455555555555 6778888999999998 999999887
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCC-----CCCCc-------hhHHHHHHHHHHHH-Hcccccccccccccc
Q 008632 111 SLIYILGLSMMTLLALITLLSSSDCQNNNTAKS-----CSPHH-------FQIIVFIFSLYLVA-IGQGGHKPCTQAFGA 177 (558)
Q Consensus 111 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~l~g-ig~g~~~~~~~~~~~ 177 (558)
...+....+++++.-.|-.. -.+.|-+.. --|+. .+-|...+.-++.- .|.=...-.-.++..
T Consensus 99 ~~~F~~fF~LFa~Vi~P~~~----~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faN 174 (509)
T COG3202 99 LGFFLGFFALFAFVIYPYKD----ILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFAN 174 (509)
T ss_pred HHHHHHHHHHHHHHHhcccc----ccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777655331100 000000000 00000 00011111000000 111111113356678
Q ss_pred cCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccc
Q 008632 178 DQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN 219 (558)
Q Consensus 178 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 219 (558)
|..+.++ -.|.+++++.+.|++..++..+..++..+
T Consensus 175 eitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 175 EITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888877 88999999999999988888888777653
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.16 E-value=3.3 Score=44.15 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhh--cchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCC--CCchhHHHH
Q 008632 79 VNVWSGTASLLPLLGAFLADSF--LGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCS--PHHFQIIVF 154 (558)
Q Consensus 79 ~~~~~~~~~~~~~~~G~laDr~--~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 154 (558)
......+..++.+..+.+.+|. +||++.+.++.++..++.++.-+... . +..-++++-. .-.+.....
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p--~------dap~~~t~~~~~~~~~~~~~~ 356 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFP--N------DAPLRPTDSPPLLFTPSYYLA 356 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccc--c------cCCCCCCcccccccccchhHH
Confidence 3344455556666677777643 38999999998888888777665422 0 0001111111 111224455
Q ss_pred HHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhh
Q 008632 155 IFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVI 214 (558)
Q Consensus 155 ~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 214 (558)
.+.-+++|++-+......+.++++..|+ + |..+++++.+-..++..++.....
T Consensus 357 ~ii~~l~G~~D~~~~t~~~~ii~~~~~~-~------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 357 LIIGFLLGFGDACFNTQRYVIIALLYPD-D------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcC-c------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5666788999999999999999999954 3 777888877666676665544433
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.97 E-value=2.4 Score=42.80 Aligned_cols=117 Identities=13% Similarity=-0.000 Sum_probs=66.8
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
.-|.++.+-...+....+ |.-...+...+..++|.... + ..........++.+.+..++ |-|+++..+...+
T Consensus 27 ~~knv~i~s~~fl~~f~a-~~gl~nlq~~vn~~lg~~sl--~----~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~~Y 98 (390)
T KOG3097|consen 27 ILKNVLILSIAFLLTFTA-YLGLQNLQTSVNYDLGTVSL--G----ALYLSLIDSSMFMPLLIRFL-GTKWTMVLAVFPY 98 (390)
T ss_pred hhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhcCcccchh--h----hhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 345555444333333333 33334444444444432221 1 12223334445555667666 9999998776555
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCC
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQN 184 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~ 184 (558)
....+.--. ..+..++.+-...|+|.+.+...-.+++++.-....
T Consensus 99 ~lyiA~Nl~-------------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya 143 (390)
T KOG3097|consen 99 ALYIAANLE-------------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYA 143 (390)
T ss_pred HHHHHhhcc-------------------------hhHHhhccHHHhhccccccccccCcceecHHHHHHH
Confidence 443322221 335667788888899999999988888888776544
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.68 E-value=3.2 Score=42.31 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=58.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccc
Q 008632 446 TSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLN 525 (558)
Q Consensus 446 ~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~ 525 (558)
.++|+..++++++..-..+..+....-+++....+.-|...|+.+++.- ++=..+.-.+.|.++. +.+- -.
T Consensus 324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl---~lQsilT~iVvd~~g~--~L~i----r~ 394 (433)
T KOG3810|consen 324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVAL---ILQSILTLIVVDDRGL--GLDI----RT 394 (433)
T ss_pred cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHH---HHHHhheEEEEccccc--CCCc----ce
Confidence 5688888999998887777644444456677788888999998877433 3323333333332211 0000 00
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008632 526 R-AHLDYFYWLLAALSAGGLLAFLYFAKS 553 (558)
Q Consensus 526 ~-~~~~~~~~~~a~~~~i~~~~~~~~~~~ 553 (558)
+ --+..+|.+++++.+++....+...++
T Consensus 395 Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~ 423 (433)
T KOG3810|consen 395 QFVVYSSYFIVLGVIFLIGFGIEYLMCRR 423 (433)
T ss_pred eEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence 1 112345788888888887665554444
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=85.82 E-value=2.5 Score=45.12 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhh
Q 008632 150 QIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILV 212 (558)
Q Consensus 150 ~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 212 (558)
+.+..++..++.|+..|-.......+..+..++++ |..+-.+.....++|-.+|..+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888999999988888888888877554 6666666666666776666543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=83.26 E-value=37 Score=32.47 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhccCCh-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 008632 448 VWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK-ELKSFGLSIYMS-VLGVGGFLSSILVSIINE 509 (558)
Q Consensus 448 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~-~~~~g~~ig~~~~~~i~~ 509 (558)
.+.+.......+++.+...+....++.+..|+ +.|+...+.... ...++..+++.+.+.+..
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555557777777777777889999998 778888888887 577788888877777754
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=81.85 E-value=24 Score=37.11 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=67.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHH--HHHHHHHHHhhhcccccccCCCCCCCCCC
Q 008632 69 GESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILG--LSMMTLLALITLLSSSDCQNNNTAKSCSP 146 (558)
Q Consensus 69 ~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (558)
+-...-.|.+-+...+.+.++.+..|++..++ .+..-+..+.+-...+ .+++...
T Consensus 281 ~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w-~~~~~l~l~~~S~l~a~~L~lm~~t---------------------- 337 (412)
T PF01770_consen 281 DNESVYNGAVEAASTLLGAIAALLAGYVKVNW-DRWGELALGVFSLLQAGLLFLMSFT---------------------- 337 (412)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHhHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 34445568888888889999999999997777 7766555554433333 3334443
Q ss_pred CchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHH
Q 008632 147 HHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYF 200 (558)
Q Consensus 147 ~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 200 (558)
.+.|..+++-++.+.......+....-++.....+. -+..+|+..+
T Consensus 338 --~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~------yaLVFGiNtf 383 (412)
T PF01770_consen 338 --GNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEER------YALVFGINTF 383 (412)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------eeeeeeeHHH
Confidence 347888887777766666666666666666666665 6677766553
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 558 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 5e-16 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 7e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 412 bits (1060), Expect = e-139
Identities = 115/555 (20%), Positives = 203/555 (36%), Gaps = 84/555 (15%)
Query: 31 LNSGGW-RAASFIIGVEVAERFAYYGISSNLITYLTGQLGEST------ATAAAAVNVWS 83
+++ W R +II E ERF++YG+ + L +L L S A A + +
Sbjct: 5 VDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFV 64
Query: 84 GTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKS 143
PLLG ++AD F G++ TI+ SLIY +G + + +
Sbjct: 65 IGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE------------------ 106
Query: 144 CSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGIS 203
+ F L+L+A+G GG KP +F DQFD N F+ +YF I+
Sbjct: 107 -----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTIN 158
Query: 204 FGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIG 263
FG+ L + + N A+ FGIP M A V F LG K Y
Sbjct: 159 FGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP--KDPHGFL 216
Query: 264 RVFVVAIKTRKATLASEDEA----------------QSSQQFKFLNKALL--------AT 299
V A+ T+ + + L A++
Sbjct: 217 PVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGA 276
Query: 300 PDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRS 359
K V+ +++LR++ ++A + +F Q + + Q M +
Sbjct: 277 SLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM----VKP 332
Query: 360 IKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVV 419
A +Q + ++ IP + + P + L+++GAG+ ++ +S +V
Sbjct: 333 QWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLT---ALRKMGAGIAITGLSWIV 389
Query: 420 AALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPK 479
+++ + S++W I Y L +V EF Y Q PK
Sbjct: 390 VGTIQLMMDGGS-------------ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK 436
Query: 480 ELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAAL 539
+K +S + + VG + + T + ++ F++ A
Sbjct: 437 AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGF 491
Query: 540 SAGGLLAFLYFAKSY 554
+ + F +A+SY
Sbjct: 492 AILAAIVFALYARSY 506
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-31
Identities = 87/533 (16%), Positives = 182/533 (34%), Gaps = 94/533 (17%)
Query: 37 RAASFIIGVEVAERFAYYGISSNLITYLT-----GQLGESTATAAAAVNVWSGTASLLPL 91
S + E+ ERF+YYG+ + L+ Y+ G L + ATAA+ + +++ L
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 92 LGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQI 151
+G F+AD +G + ++ +LG ++ L +
Sbjct: 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASA---------------------- 110
Query: 152 IVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTIL 211
S+ L+ IG G KP +D + + + + F+ + FGI+ GA L
Sbjct: 111 --LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPL 164
Query: 212 VVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGR------- 264
+V Q+ + + F + M L+++ G K + +P A
Sbjct: 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKV 224
Query: 265 -----VFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAK 319
F+ I + A + + + K+ E
Sbjct: 225 SLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKV----TSTEHL 280
Query: 320 ALLRLIPIWATCLVYAIVFAQYTT---FFTKQGATMDRTITRSIKIPAASLQLFIGIGII 376
++ IP++ +++ + Q + F + +D + P + Q + I+
Sbjct: 281 RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE--RVDSSW-----FPVSWFQSLNPLFIM 333
Query: 377 TFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGL 436
+ P + ++ + PS T + G++ + +S ++ A+ + K
Sbjct: 334 LYTPFFAWLWTAWKKN---QPSSPT---KFAVGLMFAGLSFLLMAIPGALYGTSGK---- 383
Query: 437 IDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVG 496
S WL+ + L + ++ PK S +S++ VG
Sbjct: 384 ---------VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434
Query: 497 GFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLY 549
L++ LV++ N + + YF + G++
Sbjct: 435 SALNAQLVTLYNAKS----------------EVAYFSYFGLGSVVLGIVLVFL 471
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 1e-09
Identities = 61/452 (13%), Positives = 126/452 (27%), Gaps = 133/452 (29%)
Query: 133 SDCQNN--NTAKSCSPHHFQIIVFIFSL-----------YLVAIGQGGH-KPCTQAFGAD 178
+ ++ N + + ++ + L ++ G G K
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL---- 168
Query: 179 QFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALV 238
D + + K F +W ++ ++ V+ + L +
Sbjct: 169 --DVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKL---------LYQIDPNWT 214
Query: 239 LFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLN---KA 295
+ + I S Q A + R+ K + L Q+++ + N K
Sbjct: 215 SRSDHSSNIKLRIHSIQ----AELRRLL--KSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 296 LLATPDVSLED------GKLCTLEDV------EEAKALLRLIPIWATCLVYAIVFAQYTT 343
LL T + D +L+ +E K+L +Y
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL----------------LLKYLD 312
Query: 344 FFTKQGATMDRTITRSIKIPAASLQ---LFIGIGIITFIPIYDCIFVPITRYFTQNPSGI 400
R +P L + I I +
Sbjct: 313 -------------CRPQDLPREVLTTNPRRLSI---------------IAESIRDGLATW 344
Query: 401 TMLQRIGAGMLLSSISMVVAAL--VEIKRLETAKEYGLIDKPNVTIPTSV----WWLIPQ 454
+ + L + I + L E +++ + + IPT + W+ + +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLSVFPP-SAHIPTILLSLIWFDVIK 401
Query: 455 YLLCGIADVFTIVGLQEFF-YDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEAT-- 511
DV +V + Y + K+ K +SI + V + NE
Sbjct: 402 S------DVMVVV--NKLHKYSLVEKQPKESTISIP-------SIYLELKVKLENEYALH 446
Query: 512 -----SRDGGDSWFADNLNRAHLD-YFYWLLA 537
+ ++ +D+L +LD YFY +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.9 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.87 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.42 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.36 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.28 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.18 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.03 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.21 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-31 Score=280.98 Aligned_cols=446 Identities=18% Similarity=0.246 Sum_probs=294.5
Q ss_pred CCCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccc-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhHh-hcchhHH
Q 008632 33 SGGWRAASFIIGVEVAERFAYYGISSNLITYLTGQ-----LGESTATAAAAVNVWSGTASLLPLLGAFLADS-FLGRFRT 106 (558)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~ 106 (558)
++++|.++.+....++..+++|+....++.|++++ +|.+..+.+++.+.+.++..++.++.|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 34567788888899999999999999999999988 99999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChh
Q 008632 107 IVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ 186 (558)
Q Consensus 107 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 186 (558)
+..+.++..++.+++.++++ .+.++++|+++|+|.+...+...++++|.+|++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 143 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFG------------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCS------------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH
T ss_pred HHHHHHHHHHHHHHHHHhhh------------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc
Confidence 99999999999988877644 778999999999999999999999999999987743
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCC--CCCCChhhHHHH
Q 008632 187 ERRAKSSFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIK--SKQRNPFARIGR 264 (558)
Q Consensus 187 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 264 (558)
|+.++++++.+.++|..++|.+++.+.+..||++.|++.++..+++.+.+....++..+++. +++....++..+
T Consensus 144 ----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4aps_A 144 ----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP 219 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred ----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence 77788889999999999999999999998999999998877766665555443333222111 110011122111
Q ss_pred HHHH--------------HHhhccccccchhhhhcccchh-hHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 008632 265 VFVV--------------AIKTRKATLASEDEAQSSQQFK-FLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWA 329 (558)
Q Consensus 265 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (558)
.... ........ .++..... .......... ....++.... ...++++.......+.
T Consensus 220 ~~~~~g~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~ 290 (491)
T 4aps_A 220 LLVKVSLAVAGFIAIIVVMNLVGWNS------LPAYINLLTIVAIAIPVFY--FAWMISSVKV-TSTEHLRVVSYIPLFI 290 (491)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHHSSCC------TTHHHHHHHHHHHHHHHHH--HHHHC-------------CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcc------cccchhhhhHHHHHHHHHH--HHHHhhcccc-cHHHHHHHHHHHHHHH
Confidence 1100 00000000 00000000 0000000000 0000000000 0112333333344444
Q ss_pred HHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHH
Q 008632 330 TCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAG 409 (558)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 409 (558)
....++..+.+....+...... ..+ ......+.......+..++..++.+++.++++||. ....+.+..|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~ 360 (491)
T 4aps_A 291 AAVLFWAIEEQGSVVLATFAAE---RVD-SSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVG 360 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHH---SCC-CSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHH---Hhc-cCccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHH
Confidence 4455555555555433222111 110 00134456667777888888888888878777664 2345567788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHH
Q 008632 410 MLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIY 489 (558)
Q Consensus 410 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 489 (558)
.++.++++++....... .+ ...+.+.++.++.+++.+++.+...+...+++.|..|++.|+.++|+.
T Consensus 361 ~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 427 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGAL-------YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW 427 (491)
T ss_dssp HHHHHHHHTTTHHHHHH-------CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH
T ss_pred HHHHHHHHHHHHHHHHh-------cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88888888776654210 00 011245667777888889999988777888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008632 490 MSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYNR 556 (558)
Q Consensus 490 ~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~ 556 (558)
++...+|..+++.+.+.+.+. ++...|.+++++++++.++.+++.++.++
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877541 22346778888888888888877665543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=273.27 Aligned_cols=460 Identities=25% Similarity=0.409 Sum_probs=284.5
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccC------CChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLG------ESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTI 107 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~ 107 (558)
+++|.++.+....++.++++|+....++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345667778888899999999999999999999999 99999999999999999999999999999955999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChh
Q 008632 108 VVASLIYILGLSMMTLLA-LITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQ 186 (558)
Q Consensus 108 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~ 186 (558)
..+.++..++.+++.+++ + .+.++++|+++|++.+...+...++++|.+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 142 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHS------------------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN-- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSC------------------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT--
T ss_pred HHHHHHHHHHHHHHHHhccc------------------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccc--
Confidence 999999999998888764 3 7889999999999999999999999999999887
Q ss_pred hhhhhhhh---hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHH
Q 008632 187 ERRAKSSF---FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIG 263 (558)
Q Consensus 187 ~~~~r~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (558)
|++. +++++...++|..++|.+++.+.+..||++.|++.+++.+++.+.++..+++.+++++++ ++..+..
T Consensus 143 ----r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 216 (524)
T 2xut_A 143 ----KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP--KDPHGFL 216 (524)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC--ccchhHH
Confidence 7654 445888999999999999999998889999999888776666655554444333222221 1111111
Q ss_pred HHHHHHHhhccccccchh-------------hhhcccch---------hhHHhhhhcCCCCCCCCC-------CCCchhh
Q 008632 264 RVFVVAIKTRKATLASED-------------EAQSSQQF---------KFLNKALLATPDVSLEDG-------KLCTLED 314 (558)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------~~~~~~~ 314 (558)
+.+....++++....... ......+. .+....+. ...+| ..+....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 291 (524)
T 2xut_A 217 PVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFV-----GAGASLQLERARKSHPDAA 291 (524)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHH-----HTGGGTHHHHSCCSCCSSS
T ss_pred HHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhccc-----ccchhhHHhhhhccccHhH
Confidence 111111111110000000 00000000 00000000 00000 0000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccc
Q 008632 315 VEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFT 394 (558)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 394 (558)
.+++++.......+.....++..+.+....+..+....+.. .+ .+.+.....+.+..++..++.+++..+..+|+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (524)
T 2xut_A 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG 367 (524)
T ss_dssp STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC
Confidence 11233333344444444455555555554444332222111 00 245566667777788888888887644445542
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 008632 395 QNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFY 474 (558)
Q Consensus 395 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~ 474 (558)
++ .+..+.+..|+++.++++++.+..... .......+.+++++.+++.+++.+...+...+++.
T Consensus 368 ~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 431 (524)
T 2xut_A 368 VK---LTALRKMGAGIAITGLSWIVVGTIQLM-------------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAY 431 (524)
T ss_dssp ------CCHHHHHTHHHHHHHHHHTTTTTTTT-------------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred CC---CChHHHHHHHHHHHHHHHHHHHHHHHH-------------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 334556677887777777665542100 00001235566777888999999998888889999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccc-ccccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008632 475 DQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFAD-NLNRAHLDYFYWLLAALSAGGLLAFLYFAKS 553 (558)
Q Consensus 475 ~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~ 553 (558)
+..|++.||.++|+.++..++|+.+++.+.+.+.+..+ .+|.++ +. +.....|++.++++++++++++++.++
T Consensus 432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865321 123211 00 111233777888888888887777766
Q ss_pred ccc
Q 008632 554 YNR 556 (558)
Q Consensus 554 ~~~ 556 (558)
+++
T Consensus 506 ~~~ 508 (524)
T 2xut_A 506 YQM 508 (524)
T ss_dssp ---
T ss_pred hcc
Confidence 543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=251.75 Aligned_cols=399 Identities=11% Similarity=0.005 Sum_probs=255.4
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
++.++.+....+......+.+.+.++.+ .+++ .+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 4455555556666666655565666554 5567 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHH----HHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhh
Q 008632 116 LGLSMMTL----LALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAK 191 (558)
Q Consensus 116 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r 191 (558)
++.+++.+ +++ .+.++++|+++|++.+...+...++++|.+|+++ |
T Consensus 104 ~~~~~~~~~~~~~~~------------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATSS------------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R 153 (451)
T ss_dssp HHHHHHHHCHHHHSS------------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred HHHHHHHhhhhcccc------------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence 99999988 544 7789999999999999999999999999999887 9
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHH
Q 008632 192 SSFFNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAI 270 (558)
Q Consensus 192 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (558)
++++++.+.+.++|..++|.+++++.+..| ||+.|++.+++.++..+..+...++.+++...++.+..++
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 224 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN--------- 224 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC---------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc---------
Confidence 999999999999999999999999888888 9999998887765554443333222111110000000000
Q ss_pred hhccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhcccceeeeec
Q 008632 271 KTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALL-RLIPIWATCLVYAIVFAQYTTFFTKQG 349 (558)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (558)
+.+++. +. .. ......+........+.+.+. ..+..+.............+.++.
T Consensus 225 -------------~~~~~~---~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 280 (451)
T 1pw4_A 225 -------------DYPDDY---NE---KA--EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK--- 280 (451)
T ss_dssp -------------C---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT---
T ss_pred -------------cccccc---hh---hh--hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 000000 00 00 000001000000000112222 222222222222222222222211
Q ss_pred cccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhh--ccccccCCCCCChhhHHHHHHHHHH-HHHHHHHHHHHH
Q 008632 350 ATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPI--TRYFTQNPSGITMLQRIGAGMLLSS-ISMVVAALVEIK 426 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~~~~~~ 426 (558)
...+ .-....+.......+..++..++.+++.+++ .+|. .+..+..+.. ++++++...
T Consensus 281 ----~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--- 341 (451)
T 1pw4_A 281 ----EVKH-FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----------ATGVFFMTLVTIATIVYWMN--- 341 (451)
T ss_dssp ----TBSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----------HHHHHHHHHHHHHHHHTTSC---
T ss_pred ----HhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------hHHHHHHHHHHHHHHHHHHh---
Confidence 1111 0011223445555566666677777776665 3332 3444444443 444433321
Q ss_pred HHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 008632 427 RLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV-GGFLSSILVS 505 (558)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~-g~~ig~~~~~ 505 (558)
...+.+...+..++.+++.....+....+..+..|++.|+.++|+.++...+ |..+++.+.+
T Consensus 342 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 342 -----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124555666667777777777777778999999999999999999999999 9999999999
Q ss_pred HHhhhccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 008632 506 IINEATSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAK 552 (558)
Q Consensus 506 ~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~ 552 (558)
.+.+.. ++...|++.+++.+++.++.++..+
T Consensus 405 ~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 405 YTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 997632 2345677788888877777766544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-26 Score=238.06 Aligned_cols=359 Identities=11% Similarity=0.056 Sum_probs=232.1
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
++++.++.+....+...+......+.+ +++++++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 344455555555555555554444444 457789999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
.+++.+++..... ..+.+.++++|+++|++.+...+...++++|.+|+++ |++
T Consensus 101 ~~~~~~~~~~~~~---------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 153 (438)
T 3o7q_A 101 YALGAALFWPAAE---------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_dssp HHHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHH
T ss_pred HHHHHHHHHhccc---------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHH
Confidence 9999998843321 0338899999999999999999999999999999998 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheec-cccc-------------------------chhhhHHHHHHHHHHHHHHHHcCcce
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQ-DNLN-------------------------WALGFGIPCAFMVAALVLFLLGTKTY 247 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~ 247 (558)
++++.+...++|..++|.+++.+. +..+ ||+.|++.+...++..+.++..+.
T Consensus 154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-- 231 (438)
T 3o7q_A 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF-- 231 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 999999999999999999999987 5554 899997666655444444333211
Q ss_pred EEeCCCC-CCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHH
Q 008632 248 RFSIKSK-QRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIP 326 (558)
Q Consensus 248 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (558)
++.++++ +++...+..+.....++ +++.....+.
T Consensus 232 p~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~ 266 (438)
T 3o7q_A 232 PALQSDNHSDAKQGSFSASLSRLAR---------------------------------------------IRHWRWAVLA 266 (438)
T ss_dssp CCCTTTCCCCSSTTSHHHHHHHHTT---------------------------------------------CSHHHHHHHH
T ss_pred CcccccccccccccchhhhHHHHHh---------------------------------------------ChHHHHHHHH
Confidence 1111110 00000000000000000 0111111122
Q ss_pred HHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHH
Q 008632 327 IWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRI 406 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 406 (558)
.+...........+.+.++..+..+.+ ....+.......+..++..++.+++.+++.+| +.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~ 328 (438)
T 3o7q_A 267 QFCYVGAQTACWSYLIRYAVEEIPGMT-------AGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----------KVL 328 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHH
Confidence 222222222222222222111110111 11223344445555666666777776655444 346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHH
Q 008632 407 GAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGL 486 (558)
Q Consensus 407 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 486 (558)
..+.++..+++++.... .+.+ .....++.+++.+...+...++..|..|++ ++.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~ 384 (438)
T 3o7q_A 329 AAYALIAMALCLISAFA----------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGS 384 (438)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHH
T ss_pred HHHHHHHHHHHHHHHHc----------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchh
Confidence 66666666666555442 2222 233446677777777777888889999987 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 008632 487 SIYMSVLGVGGFLSSILVSIINEAT 511 (558)
Q Consensus 487 g~~~~~~~~g~~ig~~~~~~i~~~~ 511 (558)
++.. ...+|..++|.+.|.+.|..
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 9887 67799999999999998754
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=238.90 Aligned_cols=406 Identities=13% Similarity=0.090 Sum_probs=227.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchh
Q 008632 71 STATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQ 150 (558)
Q Consensus 71 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (558)
++...+++.+.+.++..++.++.|+++||+ |||++++.+.+++.++.++++++.......... .........+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~------~~~~~~~a~~ 125 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD------NTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS------SSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch------hHHHHHHhhh
Confidence 345678889999999999999999999999 999999999999999999998642100000000 0000000145
Q ss_pred HHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhheeccc--------ccc
Q 008632 151 IIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYIQDN--------LNW 222 (558)
Q Consensus 151 ~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~g~ 222 (558)
.+.++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+.+..+|..+++.++..+... .+|
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8899999999999999999999999999999988 99999999999999999988777655432 246
Q ss_pred hhhhHHHHHHHHHHHHHHHH--cCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHhhhhcCC
Q 008632 223 ALGFGIPCAFMVAALVLFLL--GTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNKALLATP 300 (558)
Q Consensus 223 ~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (558)
|..+.+..+..++..+..+. +.|++...+.+ .++..+.+....++.... .+..+..+..+..+....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~-----~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 268 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGK-----QEQAEGILRKIMGNTLAT------QAVQEIKHSLDHGRKTGG 268 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC-----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc-----hhHHHHhHHHhcCCchhH------HHHHHHHHHHHhhhhhhh
Confidence 66665555443333322211 11111111111 112222221111110000 000000000000000000
Q ss_pred CCCCCCCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHHHHHHHH
Q 008632 301 DVSLEDGKLCTLEDVEEAKALL-RLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGIGIITFI 379 (558)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (558)
......+++.. .....+..+.........+...+. ...+ ..............+..++..
T Consensus 269 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~ 329 (491)
T 4gc0_A 269 -----------RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-------KTLG-ASTDIALLQTIIVGVINLTFT 329 (491)
T ss_dssp -----------HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------HHSS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-------HhcC-CCccchhhHHHHHHHHHHHHH
Confidence 00000011111 111111111110011111111111 0010 001111222333444455555
Q ss_pred hhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHHHHHHHH
Q 008632 380 PIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIPQYLLCG 459 (558)
Q Consensus 380 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 459 (558)
.+...+.++++||+ ....+...+.++++..+.... .....+..++...+..
T Consensus 330 ~~~~~l~dr~Grr~-----------~~~~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~~~~ 380 (491)
T 4gc0_A 330 VLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFY------------------TQAPGIVALLSMLFYV 380 (491)
T ss_dssp HHHHHHHHHHCSHH-----------HHHHHHHHHHHHHHHHHHHHH------------------TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcc-----------hhccchHHHHHHHHHHHHHHh------------------cccchHHHHHHHHHHH
Confidence 56666666667664 356666666666665554321 0112222233333333
Q ss_pred HHHHHH-hhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccchhHHHHHHHHH
Q 008632 460 IADVFT-IVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYFYWLLAA 538 (558)
Q Consensus 460 ~g~~~~-~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~~~~~a~ 538 (558)
.+.... .+..+.+..|.+|++.|++++|+.+..+++++++++.+.+.+.+..... ...+....|+++++
T Consensus 381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~----------~~~~~~~~~~i~~~ 450 (491)
T 4gc0_A 381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV----------AHFHNGFSYWIYGC 450 (491)
T ss_dssp HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH----------HHHTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhhhHHHHHHHH
Confidence 333332 3555678999999999999999999999999999999998885421100 00112346888999
Q ss_pred HHHHHHHHHHHhhcccccCC
Q 008632 539 LSAGGLLAFLYFAKSYNREN 558 (558)
Q Consensus 539 ~~~i~~~~~~~~~~~~~~~~ 558 (558)
+++++.++.+++.||+|+|+
T Consensus 451 ~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 451 MGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHHHHHHHHCCCCTTCC
T ss_pred HHHHHHHHHHheecCCCCCC
Confidence 99999999999999999874
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=216.30 Aligned_cols=344 Identities=10% Similarity=0.040 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHH
Q 008632 42 IIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMM 121 (558)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~ 121 (558)
+....++..+....+.+.++. +.+++|.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHH
Confidence 344455555555555566665 4568999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHH
Q 008632 122 TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFG 201 (558)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 201 (558)
.++++ .+.+++.|+++|++.+...+...+++.|.+|+++ |++++++.+..
T Consensus 83 ~~~~~------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 132 (375)
T 2gfp_A 83 VTTSS------------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMG 132 (375)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHH
T ss_pred HHhcc------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHH
Confidence 88865 8889999999999999999999999999999888 99999999999
Q ss_pred HHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhccccccchh
Q 008632 202 ISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRKATLASED 281 (558)
Q Consensus 202 ~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (558)
.++|..++|.+++.+.+..|||+.|++.++..++..+......| +++++++ +. +
T Consensus 133 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~--------------~-------- 186 (375)
T 2gfp_A 133 ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMP---ETRPVDA-PR--------------T-------- 186 (375)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSC---CCSTTTC-CC--------------C--------
T ss_pred HHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCc---ccCCCCc-cc--------------c--------
Confidence 99999999999999999889999998777665544432222111 1111110 00 0
Q ss_pred hhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccc
Q 008632 282 EAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIK 361 (558)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (558)
+ ...++ .+..++++.....+..+.............+.++.+ ..+.+ .
T Consensus 187 -----~---------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-------~ 234 (375)
T 2gfp_A 187 -----R---------------LLTSY----KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGA-VLGLS-------S 234 (375)
T ss_dssp -----C---------------TTTCS----THHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-HHHHH-------H
T ss_pred -----c---------------HHHHH----HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCC-------H
Confidence 0 00001 111112222222222222222222222222222211 01100 1
Q ss_pred cChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHH-HHHHHH--HHHHHHHHHHhhhhhhccCC
Q 008632 362 IPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLL-SSISMV--VAALVEIKRLETAKEYGLID 438 (558)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l-~~~~~~--~~~~~~~~~~~~~~~~~~~~ 438 (558)
...+.......+..++..++.+++ .||.. + ....+..+ ...+.. ......
T Consensus 235 ~~~g~~~~~~~~~~~~~~~~~~~l----~~r~~-------~--~~~~~~~~~~~~~~~~~~~~~~~-------------- 287 (375)
T 2gfp_A 235 MTVSILFILPIPAAFFGAWFAGRP----NKRFS-------T--LMWQSVICCLLAGLLMWIPDWFG-------------- 287 (375)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT----TTHHH-------H--HHHHHHHHHHHTSSSSSHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------H--HHHHHHHHHHHHHHHHHHHhhhc--------------
Confidence 112333444445555555555554 33321 1 13333333 222222 122111
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008632 439 KPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGVGGFLSSILVSIINE 509 (558)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~ig~~~~~~i~~ 509 (558)
..+.+...+..++.+++.+...+....+..|..| +.|+++.|+.+....+|..+++.+.+.+.+
T Consensus 288 ------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 288 ------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred ------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1244556666778888888888888889999998 889999999999999999999988888754
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-23 Score=216.15 Aligned_cols=394 Identities=12% Similarity=0.027 Sum_probs=222.2
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYI 115 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 115 (558)
.|..+.+....++...++..+.++++.|+++++|++..+.+++.+.+.++..+++++.|+++||+ |||++++.+.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 34555555555555566666778999999999999999999999999999999999999999999 99999998887765
Q ss_pred HHHHHH---HHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 116 LGLSMM---TLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 116 i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
++.... .+.... ...+..++.+.+++.+...+.......+..++.. +.++
T Consensus 85 ~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 85 VMFAPFFIFIFGPLL-----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp SCHHHHHHHTHHHHH-----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 532211 121110 0112344555555555544444444444433211 1267
Q ss_pred hhhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhh
Q 008632 193 SFFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKT 272 (558)
Q Consensus 193 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (558)
..++..+...++|..++|.+++++.+ .+|+..|++.++..++..+......+ +++++.+...+
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------------ 200 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT----DAPSSATVANA------------ 200 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCC----CCSCSSCSSSS------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCc----ccccccccccc------------
Confidence 77777777788999999999998876 58999988766543333322211111 11110000000
Q ss_pred ccccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeecccc
Q 008632 273 RKATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATM 352 (558)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (558)
. ..+.++.+. .. + .+..++++.....+..+.....+....++.+.++... .
T Consensus 201 ~---------~~~~~~~~~-~~------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 251 (417)
T 2cfq_A 201 V---------GANHSAFSL-KL------------A----LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF---F 251 (417)
T ss_dssp S---------SSCCCCCCH-HH------------H----HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---S
T ss_pred c---------ccccccccH-HH------------H----HHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 0 000000000 00 0 0000011111111111111111122112222222110 0
Q ss_pred Cc-ccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008632 353 DR-TITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETA 431 (558)
Q Consensus 353 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 431 (558)
.. ..+ ....+.....+.+..++..++.+++.||+++|+ .+..+.++.+++++..+..
T Consensus 252 ~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T 2cfq_A 252 ATGEQG---TRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMSVRIIGSSFA-------- 309 (417)
T ss_dssp SSHHHH---THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHHHHHHHHTTC--------
T ss_pred hccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----------HHHHHHHHHHHHHHHHHHh--------
Confidence 00 000 001123334444455555666667766665553 4556666666655444321
Q ss_pred hhhccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Q 008632 432 KEYGLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI-YMSVLGVGGFLSSILVSIINEA 510 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~ig~~~~~~i~~~ 510 (558)
.+.+.+++...+.+++.....+....++.|..|++.||++.++ +++.+.+|+.++|.+.|.+.+.
T Consensus 310 --------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~ 375 (417)
T 2cfq_A 310 --------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp --------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence 2333444444555666555555556789999999999999999 4888899999999999988652
Q ss_pred ccCCCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 511 TSRDGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 511 ~~~~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
.++...|.+.+++++++.+..++..|+.+
T Consensus 376 ----------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 376 ----------------IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp ----------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred ----------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 12345677888888888877777666544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.2e-13 Score=138.56 Aligned_cols=180 Identities=14% Similarity=0.078 Sum_probs=147.6
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhc-chhHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFL-GRFRTIVVASLI 113 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~~~~~~~ 113 (558)
+.|.++......++..+.++++..+++.|+++.+|.+..+.+++.+...++..++.++.|+++||+. |||+.+..+.++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 329 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 3466777777777888888889999999999989999999999999999999999999999999942 788887777665
Q ss_pred HH-HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhh
Q 008632 114 YI-LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKS 192 (558)
Q Consensus 114 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 192 (558)
.. ++.+++.+..+ .+.+.+.+..++.|++.+...+....++.|.+|++. |+
T Consensus 330 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g 381 (451)
T 1pw4_A 330 LVTIATIVYWMNPA----------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG 381 (451)
T ss_dssp HHHHHHHHTTSCCT----------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HH
T ss_pred HHHHHHHHHHHhcc----------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hh
Confidence 55 55544443211 235667777888899888888888899999999887 99
Q ss_pred hhhhHHHHHHHH-HHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 193 SFFNWWYFGISF-GANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 193 ~~~~~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
++.++++...++ |..++|.+.|.+.+..||+..|++.+++.+++.+..+.
T Consensus 382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999998887776666555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=133.17 Aligned_cols=169 Identities=14% Similarity=0.074 Sum_probs=135.5
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHHH-hccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 36 WRAASFIIGVEVAERFAYYGISSNLITY-LTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
.|.++......++.....+.+..+++.| +++.+|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 4556666666666777777888999999 8988999999999999999999999999999999998 9999999998888
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++.++..+.++ .+. .+..++.+++.+...+...++..|.+|++ ++.+
T Consensus 336 ~~~~~~~~~~~~------------------------~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~ 383 (438)
T 3o7q_A 336 MALCLISAFAGG------------------------HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYG 383 (438)
T ss_dssp HHHHHHHHHCCH------------------------HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHH
T ss_pred HHHHHHHHHcCC------------------------cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccch
Confidence 888777766533 333 33447788888888899999989998843 5555
Q ss_pred hhHHHHHHHHHHHhhhhhhheeccccc-chhhhHHHHHHHHHHHH
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLN-WALGFGIPCAFMVAALV 238 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~ 238 (558)
.++.. ...+|..++|.+.|.+.+..| ++..|++.+++.++..+
T Consensus 384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 55555 456999999999999999888 99999877655444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-12 Score=134.36 Aligned_cols=175 Identities=6% Similarity=0.048 Sum_probs=125.7
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCC---ChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGE---STATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
|.++......+.....++....+++.|+++.++. +....++..+...+...++.++.|+++||+ |||+++..+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 3444444333333344555556688888766653 234556677777778888899999999999 999999888877
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
.+++.++..+.++ .+.+++..++.+++.+...+....+.+|.+|++. |++
T Consensus 299 ~~~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~ 348 (417)
T 2cfq_A 299 MSVRIIGSSFATS------------------------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SAT 348 (417)
T ss_dssp HHHHHHHHTTCCS------------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHH
T ss_pred HHHHHHHHHHhcc------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence 7776555543322 4555566666677666666666789999999877 999
Q ss_pred hhhH-HHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHH
Q 008632 194 FFNW-WYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 194 ~~~~-~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
+.++ ++....+|+.++|.++|.+.+..|+...|.+.+++.+++.+..+.
T Consensus 349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 9888 577788999999999999988888888888777776666555433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-11 Score=127.73 Aligned_cols=185 Identities=13% Similarity=0.039 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHH-----HHHHH
Q 008632 39 ASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIV-----VASLI 113 (558)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~~ 113 (558)
.+......++....+......++.|+++.++.+..+.+++.....+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 34444444555556666778888999988888877778888888888889999999999998 9986654 66667
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
.+++.+++.+..... + ++...+.+.+.+..++.|++.+...+....++.|.+|++. |++
T Consensus 364 ~~~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALY--------G-------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHC--------C-------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSS
T ss_pred HHHHHHHHHHHHHhc--------C-------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHH
Confidence 777766666543200 0 0001235667777888999999989999999999999998 999
Q ss_pred hhhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcc
Q 008632 194 FFNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKT 246 (558)
Q Consensus 194 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 246 (558)
+.++++...++|..+++.+.+.+.+. ++...|.+.+.+.+++.+..+...++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764 56667776666655555555544443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4e-10 Score=119.91 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=122.3
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYIL 116 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i 116 (558)
+.........++..+..+........++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 4444444444554444444444445556667888888888777888888999999999999999 999999999888888
Q ss_pred HHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHH-HHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 117 GLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQII-VFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
+.+.+....... ..... ......+..+.+. +..+....+.+|.+|.+. |+++.
T Consensus 355 ~~~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~ 408 (491)
T 4gc0_A 355 GMFSLGTAFYTQ-------------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKAL 408 (491)
T ss_dssp HHHHHHHHHHTT-------------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHH
T ss_pred HHHHHHHHHhcc-------------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHH
Confidence 777766553310 01111 1222222222222 234667788999999999 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecc------cccchhhhHHHHHHHHHHHHHHHHcCc
Q 008632 196 NWWYFGISFGANSTILVVIYIQD------NLNWALGFGIPCAFMVAALVLFLLGTK 245 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~ 245 (558)
++.+....+|+.+++.+.+.+.+ ..++...|++.+++.+++.+..++..|
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 99998889999998888776643 234556677766666666555544444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-10 Score=119.26 Aligned_cols=164 Identities=10% Similarity=-0.012 Sum_probs=126.0
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH-HH
Q 008632 37 RAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI-YI 115 (558)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~ 115 (558)
|.++......++.....+.+..++|.|+++.+|.+..+.+++.+...++..++.++.|+++||+ ||+ . ..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~-~-~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL-M-WQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH-H-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-H-HHHHHHHHH
Confidence 5566666666777777788888899999988999999999999999999999999999999998 883 2 223322 22
Q ss_pred HHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhh
Q 008632 116 LGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFF 195 (558)
Q Consensus 116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 195 (558)
.+..+....... ..+.+.+++..++.+++.+...+...++..|.+| ++ |+++.
T Consensus 276 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~ 328 (375)
T 2gfp_A 276 AGLLMWIPDWFG--------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAG 328 (375)
T ss_dssp TSSSSSHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHH
T ss_pred HHHHHHHHhhhc--------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHH
Confidence 222221221100 0235667777888899999999999999999988 55 99999
Q ss_pred hHHHHHHHHHHHhhhhhhheecccccchhhhHHHH
Q 008632 196 NWWYFGISFGANSTILVVIYIQDNLNWALGFGIPC 230 (558)
Q Consensus 196 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 230 (558)
++.+...++|..++|.+.+.+.+..+++..+.+..
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999988777877776544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.21 E-value=6e-06 Score=88.28 Aligned_cols=138 Identities=16% Similarity=0.100 Sum_probs=100.4
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhh-ccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCC
Q 008632 364 AASLQLFIGIGIITFIPIYDCIFVPI-TRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNV 442 (558)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (558)
.+.......+...+..++.+++.|++ +||+ .+..+.++..++.++.+..
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----------~~~~~~~~~~~~~~~~~~~------------------- 105 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----------TILWLSLIYCVGHAFLAIF------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----------HHHHHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHh-------------------
Confidence 34455556666667777778877766 5553 4677777777777766653
Q ss_pred Cccc-hhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 008632 443 TIPT-SVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSI---YMSVLGVGGFLSSILVSIINEATSRDGGDS 518 (558)
Q Consensus 443 ~~~~-~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~~g~~ig~~~~~~i~~~~~~~~~~~ 518 (558)
. +.+.+++..++.|++.+...+...+++.|.+|++.|+...+. .+....+|..+++.+.+.+.+. .+
T Consensus 106 ---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~g 176 (524)
T 2xut_A 106 ---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN------FG 176 (524)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT------SC
T ss_pred ---cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cc
Confidence 3 566777788889999998888888999999999999877666 8888999999999988888642 12
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHh
Q 008632 519 WFADNLNRAHLDYFYWLLAALSAGGLLAFLYF 550 (558)
Q Consensus 519 w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~ 550 (558)
| ++.|++.+.+.+++.++.++.
T Consensus 177 ~----------~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 177 A----------AVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp H----------HHHHHHHHHHHHHHHHHHHSS
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHh
Confidence 3 456777777766665555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.38 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.3 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.3e-26 Score=241.37 Aligned_cols=385 Identities=11% Similarity=0.005 Sum_probs=230.9
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 008632 57 SSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQ 136 (558)
Q Consensus 57 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 136 (558)
.+...++++ ++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++++++....
T Consensus 44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~-------- 113 (447)
T d1pw4a_ 44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT-------- 113 (447)
T ss_dssp HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh--------
Confidence 345556776 5899999999999999999999999999999999 999999999999999999888764311
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHHHHHHHHHHHhhhhhhhee
Q 008632 137 NNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWWYFGISFGANSTILVVIYI 216 (558)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 216 (558)
.+.+.+++.|++.|++.|...+...++++|.+|+++ |++++++++.+.++|..++|.+++.+
T Consensus 114 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 114 ------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp ------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred ------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhH
Confidence 236779999999999999999999999999999888 99999999999999999999988876
Q ss_pred ccc-ccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCC-ChhhHHHHHHHHHHhhccccccchhhhhcccchhhHHh
Q 008632 217 QDN-LNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQR-NPFARIGRVFVVAIKTRKATLASEDEAQSSQQFKFLNK 294 (558)
Q Consensus 217 ~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (558)
... .+|++.|++.+.+.++..+..+...++.+++...... +...+ ..++ .+.
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~---~~~ 229 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-----------------------YPDD---YNE 229 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------------------------
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhh-----------------------cccc---hhh
Confidence 654 4799999887776555444444333322211110000 00000 0000 000
Q ss_pred hhhcCCCCCCCCCCCCchhhH-HHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCcccccccccChhhhhhhhHH
Q 008632 295 ALLATPDVSLEDGKLCTLEDV-EEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDRTITRSIKIPAASLQLFIGI 373 (558)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (558)
... .....+....... +++..+......++..........+.+.++. +..+ .-............+
T Consensus 230 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~ 296 (447)
T d1pw4a_ 230 KAE-----QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK-------EVKH-FALDKSSWAYFLYEY 296 (447)
T ss_dssp -----------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT-------TBSC-CCHHHHHHHHHHHHH
T ss_pred ccc-----cccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcc-------cccc-cccchhhhhhhcchh
Confidence 000 0000000000000 0111111122222222222222222222221 1111 001122334444455
Q ss_pred HHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCccchhHHHHH
Q 008632 374 GIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEYGLIDKPNVTIPTSVWWLIP 453 (558)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (558)
..++...+.+++.++..|+. ..........+..++....... ...+.+...+
T Consensus 297 ~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 348 (447)
T d1pw4a_ 297 AGIPGTLLCGWMSDKVFRGN--------RGATGVFFMTLVTIATIVYWMN--------------------PAGNPTVDMI 348 (447)
T ss_dssp HHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHHTTSC--------------------CTTCHHHHHH
T ss_pred hhhhhhhhhhhhhhhccccc--------cccccchhHHHHHHHHHHHHhc--------------------ccccHHHHHH
Confidence 55566666666666655543 1111111111111111111110 1234556666
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCCCCCccccccccchhHHH
Q 008632 454 QYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIYMSVLGV-GGFLSSILVSIINEATSRDGGDSWFADNLNRAHLDYF 532 (558)
Q Consensus 454 ~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~-g~~ig~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~ 532 (558)
..++.+++.....+....+..|..|++.||.++|+.++..++ |..+++.+.+.+.|.. +| ...
T Consensus 349 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~------g~----------~~~ 412 (447)
T d1pw4a_ 349 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------GW----------DGG 412 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------CS----------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------Ch----------HHH
Confidence 666777777666666778899999999999999999887776 5566888999987643 22 345
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 008632 533 YWLLAALSAGGLLAFLYFAK 552 (558)
Q Consensus 533 ~~~~a~~~~i~~~~~~~~~~ 552 (558)
|++++++++++.++++++.+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 413 FMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.7e-23 Score=213.33 Aligned_cols=399 Identities=13% Similarity=-0.013 Sum_probs=235.5
Q ss_pred CcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHH
Q 008632 35 GWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIY 114 (558)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 114 (558)
+.|..|.+....++..++.....+.++.|+++++|+|..+.|++.+.+.+...++.++.|+++||+ ||||+++.+.++.
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGM 83 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence 347788888777887777777888999999999999999999999999999999999999999999 9999999998888
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhh
Q 008632 115 ILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSF 194 (558)
Q Consensus 115 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 194 (558)
.++..+..+...... ......+.+.+.+.+.+...........+..+++ ..++.+.
T Consensus 84 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 139 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPL--------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFE 139 (417)
T ss_dssp HHTHHHHHHHTHHHH--------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCC
T ss_pred HHHHHHHHHhhhhhh--------------------HHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHH
Confidence 888888777644111 1112233344444444433333333333222222 2226666
Q ss_pred hhHHHHHHHHHHHhhhhhhheecccccchhhhHHHHHHHHHHHHHHHHcCcceEEeCCCCCCChhhHHHHHHHHHHhhcc
Q 008632 195 FNWWYFGISFGANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLFLLGTKTYRFSIKSKQRNPFARIGRVFVVAIKTRK 274 (558)
Q Consensus 195 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (558)
.+........+..+++.+++.+.+. +|+..+........+..+......++.+.+++++ . ++ ++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~---------~~-- 203 (417)
T d1pv7a_ 140 FGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA---N-AV---------GA-- 203 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS---H-HH---------HS--
T ss_pred HHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhh---h-hh---------hh--
Confidence 7777777888999999999988775 4555554444443333333333332222111111 0 00 00
Q ss_pred ccccchhhhhcccchhhHHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeeeccccCc
Q 008632 275 ATLASEDEAQSSQQFKFLNKALLATPDVSLEDGKLCTLEDVEEAKALLRLIPIWATCLVYAIVFAQYTTFFTKQGATMDR 354 (558)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (558)
..+........... . . ...+........................... ..
T Consensus 204 --------~~~~~~~~~~~~~~-~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 252 (417)
T d1pv7a_ 204 --------NHSAFSLKLALELF-R--------------Q-PKLWFLSLYVIGVSCTYDVFDQQFANFFTSF-------FA 252 (417)
T ss_dssp --------CCCCCCHHHHHHHT-T--------------S-SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-------SS
T ss_pred --------hccccccccccccc-c--------------c-ccccchhhhhHHHHHHHHhhhcccccccccc-------cc
Confidence 00000000000000 0 0 0011111111111111111111111110000 00
Q ss_pred ccccccccChhhhhhhhHHHHHHHHhhhhhhhhhhccccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008632 355 TITRSIKIPAASLQLFIGIGIITFIPIYDCIFVPITRYFTQNPSGITMLQRIGAGMLLSSISMVVAALVEIKRLETAKEY 434 (558)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 434 (558)
..+ ..............+...+...+.+++.+|.. +++.+..+.++.+++++.....
T Consensus 253 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~-----------~~~~~~~~~~~~~~~~~~~~~~----------- 309 (417)
T d1pv7a_ 253 TGE-QGTRVFGYVTTMGELLNASIMFFAPLIINRIG-----------GKNALLLAGTIMSVRIIGSSFA----------- 309 (417)
T ss_dssp CHH-HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred ccc-cchhhhcccccccccccccchhhhhhhhcccc-----------cccchhhhHHHHHHhhhccccc-----------
Confidence 000 00011122233333444444555555544433 3345777777777776665542
Q ss_pred ccCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhhhhhhccCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccC
Q 008632 435 GLIDKPNVTIPTSVWWLIPQYLLCGIADVFTIVGLQEFFYDQIPKELKSFGLSIY-MSVLGVGGFLSSILVSIINEATSR 513 (558)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~~g~~ig~~~~~~i~~~~~~ 513 (558)
.+.+...+..++.+++.+...+...+++.|..|++.|+++.|+. ++...+|..+++.+.|.+.|..
T Consensus 310 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-- 376 (417)
T d1pv7a_ 310 -----------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-- 376 (417)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH--
T ss_pred -----------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45566777778889999988888889999999999999999985 5677899999999999998643
Q ss_pred CCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008632 514 DGGDSWFADNLNRAHLDYFYWLLAALSAGGLLAFLYFAKSYN 555 (558)
Q Consensus 514 ~~~~~w~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 555 (558)
+++..|++.++++++..++.+++.|+.+
T Consensus 377 --------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 377 --------------GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 2356788888888888888887776554
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=6.4e-13 Score=136.56 Aligned_cols=181 Identities=14% Similarity=0.031 Sum_probs=138.7
Q ss_pred CCcchhhHHHHHHHHHHHHhhhhHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHH
Q 008632 34 GGWRAASFIIGVEVAERFAYYGISSNLITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLI 113 (558)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 113 (558)
.+.+.++......++.....++...+++.|+.+.++.+..+.++......+...++.+++|+++||+ +|++......+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~ 324 (447)
T d1pw4a_ 246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFF 324 (447)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHH
T ss_pred HcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchh
Confidence 3456677777777777788888999999999999999999999999999999999999999999998 887655444433
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCCCCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhh
Q 008632 114 YILGLSMMTLLALITLLSSSDCQNNNTAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSS 193 (558)
Q Consensus 114 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 193 (558)
..+.......... ....+.+...+..++.|++.++..+....+..|.+|++. |++
T Consensus 325 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 379 (447)
T d1pw4a_ 325 MTLVTIATIVYWM-------------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 379 (447)
T ss_dssp HHHHHHHHHHTTS-------------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHH
T ss_pred HHHHHHHHHHHHh-------------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 3332222222111 011235666677777888888888888999999999887 999
Q ss_pred hhhHHHHHHHH-HHHhhhhhhheecccccchhhhHHHHHHHHHHHHHH
Q 008632 194 FFNWWYFGISF-GANSTILVVIYIQDNLNWALGFGIPCAFMVAALVLF 240 (558)
Q Consensus 194 ~~~~~~~~~~~-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 240 (558)
+.++.+...++ |..++|.+.|++.+..||+..|++...+.+++.++.
T Consensus 380 ~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 99998888777 567789999999999999988877666555444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=3.2e-13 Score=136.04 Aligned_cols=152 Identities=6% Similarity=0.020 Sum_probs=125.2
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Q 008632 60 LITYLTGQLGESTATAAAAVNVWSGTASLLPLLGAFLADSFLGRFRTIVVASLIYILGLSMMTLLALITLLSSSDCQNNN 139 (558)
Q Consensus 60 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 139 (558)
...+..++.+.+....+.......+...++..+.|++.||+ |||+.+..+.++..++.++..+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~------------- 311 (417)
T d1pv7a_ 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFATS------------- 311 (417)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCCC-------------
T ss_pred cccccccccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccccc-------------
Confidence 33334445556667778888888888999999999999999 9999999999888888887776543
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHcccccccccccccccCCCCCChhhhhhhhhhhhHH-HHHHHHHHHhhhhhhheecc
Q 008632 140 TAKSCSPHHFQIIVFIFSLYLVAIGQGGHKPCTQAFGADQFDAQNPQERRAKSSFFNWW-YFGISFGANSTILVVIYIQD 218 (558)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~ 218 (558)
.+.+++..++.|++.+...+...+++.|.+|++. |++..++. +....+|..++|.+.|++.+
T Consensus 312 -----------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~ 374 (417)
T d1pv7a_ 312 -----------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred -----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888889999999999999999999999988 99999974 55667999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHH
Q 008632 219 NLNWALGFGIPCAFMVAALVLFLL 242 (558)
Q Consensus 219 ~~g~~~~f~~~~~~~~~~~~~~~~ 242 (558)
..|++..|++.+++.++..++..+
T Consensus 375 ~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 375 SIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877766655544444
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