Citrus Sinensis ID: 008687

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MPVSLSVVLVVAFQEILTFASKQALVIVSSLNFEKNMGRSRGNFHANDEDPTQRSRRKKNVSSDNSDTAAPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNADPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAKEGGHAGASSQGGANVFMASESLRKDSNSNSRPSGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP
cccccEEEEEEEcHHHHHccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEcccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHcccccc
ccccHHHHHHHHHHHHHHHHHccEEEEEcccccccccccccccccccccccccccHcHcccccccccccccccccccccccEEEcccccccccccEEEEEEEcccccEcHHHHccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHccccccccHHHcccccccccccccccccccccccHHcccccccccccHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccccc
MPVSLSVVLVVAFQEILTFASKQALVIVSSLNFeknmgrsrgnfhandedptqrsrrkknvssdnsdtaapgqgagegkralyhcnycnkditgkirikcavcpdfdlcIECFSVgvevhphksnhpyrvmdnlsfplicpdwnaddEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYtnvymnspffplpdmshvvgKNRKELLAMAKghiddkkgpskpgeatvkeespfspsrvkieemhkvgpsgrglnadpqtersskgkkpvtsgndgpslvelsgynskrqefdpeydNDAEQLLAEMefkdadseeERDIKLRVLRIYSKRLDERKRRKDFilernllypnpfekdlspeeRELCRRYDVFmrfhskedHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAkegghagassqgganVFMASEslrkdsnsnsrpsgqassshvndLYIMGFNETQLLSEAEKRLCCEirlapplyLRMQEVMSREIfsgnvnnkadahhlfkiepskidRVYDMLVKKGLAPP
MPVSLSVVLVVAFQEILTFASKQALVIVSSLNFEKNmgrsrgnfhandedptqrsrrkknvssdnsdtaapgqgagegkrALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAkghiddkkgpskpgeatvkeespfspsrvkIEEMhkvgpsgrglnadpqtersskgkkpvtsgndgpsLVELSGYNSKRQEFDPEYDNDAEQLLAEMefkdadseeerdiklrvlriyskrlderkrrkdfilernllypnpfekdlspeeRELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLkearaagcrtsaeadrylelkrgREAEEASrrakegghagassqggaNVFMASESLRKDsnsnsrpsgqassshvNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHhlfkiepskidrvYDMLVKKGLAPP
MPVSLSVVLVVAFQEILTFASKQALVIVSSLNFEKNMGRSRGNFHANDEDPTQRSRRKKNVSSDNSDTAAPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNADPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELkrgreaeeasrrakegghagassqggaNVFMASESLRKDSNSNSRPSGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP
****LSVVLVVAFQEILTFASKQALVIVSSLNF**********************************************RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGK**********************************************************************************************************************IKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFE*******RELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRI******************************************************************************NDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLV*******
****LSVVLVVAF**********************************************************************HCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNR***************************************************************************************EFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLY***************CRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREA************************************************VNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS***NNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP
MPVSLSVVLVVAFQEILTFASKQALVIVSSLNFEKNMGRSRGNFHA*****************************GEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHI********************SPSRVKIEEMHKVG***************************GPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEF********RDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRG*********************GGANVFMASES******************HVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP
*PVSLSVVLVVAFQEILTFASKQALVIVS*************************************************KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHID***************ESPFSPSRVKIEEMHKV****************************GPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAE***********************************************VNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPVSLSVVLVVAFQEILTFASKQALVIVSSLNFEKNMGRSRGNFHANDEDPTQRSRRKKNVSSDNSDTAAPGQGAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNADPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAKEGGHAGASSQGGANVFMASESLRKDSNSNSRPSGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query557 2.2.26 [Sep-21-2011]
Q9ATB4487 Transcriptional adapter A yes no 0.865 0.989 0.655 0.0
Q75LL6567 Transcriptional adapter A yes no 0.922 0.906 0.572 1e-173
Q9SFD5548 Transcriptional adapter A no no 0.928 0.943 0.475 1e-131
Q02336434 Transcriptional adapter 2 yes no 0.748 0.960 0.299 9e-61
Q9P7J7437 Transcriptional adapter 2 yes no 0.741 0.945 0.277 4e-43
O75478443 Transcriptional adapter 2 yes no 0.719 0.905 0.277 2e-38
Q3SZP8443 Transcriptional adapter 2 yes no 0.719 0.905 0.277 2e-38
Q6AYE3443 Transcriptional adapter 2 yes no 0.714 0.898 0.273 2e-38
Q6NRB5420 Transcriptional adapter 2 N/A no 0.635 0.842 0.255 2e-31
Q5RBN9420 Transcriptional adapter 2 no no 0.635 0.842 0.251 3e-30
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1 Back     alignment and function desciption
 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/522 (65%), Positives = 407/522 (77%), Gaps = 40/522 (7%)

Query: 37  MGRSRGNFHANDEDPTQRSRRKKN---VSSDNSDTAAPGQGAGEGKRALYHCNYCNKDIT 93
           MGRSRGNF  N EDPTQR+R+KKN   V +  S +  PG   G GK   Y+C+YC KDIT
Sbjct: 1   MGRSRGNFQ-NFEDPTQRTRKKKNAANVENFESTSLVPGAEGG-GK---YNCDYCQKDIT 55

Query: 94  GKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLE 153
           GKIRIKCAVCPDFDLCIEC SVG E+ PHK +HPYRVM NL+FPLICPDW+ADDE+LLLE
Sbjct: 56  GKIRIKCAVCPDFDLCIECMSVGAEITPHKCDHPYRVMGNLTFPLICPDWSADDEMLLLE 115

Query: 154 GIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAK 213
           G+E+YGLGNWAE+AEHVGTK+KE C+EHY N+Y+NSPFFPLPDMSHV GKNRKEL AMAK
Sbjct: 116 GLEIYGLGNWAEVAEHVGTKSKEQCLEHYRNIYLNSPFFPLPDMSHVAGKNRKELQAMAK 175

Query: 214 GHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNADPQTERSSKGKKPVT 273
           G IDDKK      E  +KEE PFSP +VK+E+  K          +   +RS  GKKPV+
Sbjct: 176 GRIDDKK-----AEQNMKEEYPFSPPKVKVEDTQK----------ESFVDRSFGGKKPVS 220

Query: 274 SGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKR 333
           +  +  SLVELS YN KR+EFDPEYDNDAEQLLAEMEFK+ D+ EE ++KLRVLRIYSKR
Sbjct: 221 TSVNN-SLVELSNYNQKREEFDPEYDNDAEQLLAEMEFKENDTPEEHELKLRVLRIYSKR 279

Query: 334 LDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEH 393
           LDERKRRK+FI+ERNLLYPNPFEKDLS EE+  CRR DVFMRFHSKE+H++LL+ V+SE+
Sbjct: 280 LDERKRRKEFIIERNLLYPNPFEKDLSQEEKVQCRRLDVFMRFHSKEEHDELLRNVVSEY 339

Query: 394 RTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAKEGGHAGASSQGGANVFM 453
           R +KR++DLKEA+ AGCR++AEA+RYL  KR RE EE   R KE G  G          +
Sbjct: 340 RMVKRLKDLKEAQVAGCRSTAEAERYLGRKRKRENEEGMNRGKESGQFGQ---------I 390

Query: 454 ASESLRKDSNSNSRPSGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQ 513
           A E         SRP  QASSS+VNDL ++GF E+QLLSE+EKRLC E++L PP+YL+MQ
Sbjct: 391 AGE-------MGSRPPVQASSSYVNDLDLIGFTESQLLSESEKRLCSEVKLVPPVYLQMQ 443

Query: 514 EVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 555
           +VMS EIF GNV  K+DA+ LFKI+P+K+DRVYDMLVKKG+A
Sbjct: 444 QVMSHEIFKGNVTKKSDAYSLFKIDPTKVDRVYDMLVKKGIA 485
Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known (By similarity). ADA2 stimulates the acetyltransferase activity of GCN5 on free histones or nucleosomes, probably by opening up the promoter region. Mediates auxin and cytokinin signals in the control of cell proliferation and might be involved in repression of a freezing tolerance pathway at warm temperature.
Arabidopsis thaliana (taxid: 3702)
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2 Back     alignment and function description
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1 SV=1 Back     alignment and function description
>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9P7J7|ADA2_SCHPO Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ada2 PE=1 SV=1 Back     alignment and function description
>sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo sapiens GN=TADA2A PE=1 SV=3 Back     alignment and function description
>sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos taurus GN=TADA2A PE=2 SV=1 Back     alignment and function description
>sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus norvegicus GN=Tada2a PE=2 SV=1 Back     alignment and function description
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2 SV=1 Back     alignment and function description
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
255563796541 transcriptional adaptor, putative [Ricin 0.924 0.951 0.734 0.0
359495620553 PREDICTED: transcriptional adapter ADA2b 0.926 0.933 0.740 0.0
297736705539 unnamed protein product [Vitis vinifera] 0.888 0.918 0.713 0.0
449443500552 PREDICTED: transcriptional adapter ADA2b 0.926 0.934 0.708 0.0
224139474505 histone acetyltransferase complex compon 0.904 0.998 0.743 0.0
224086542496 histone acetyltransferase complex compon 0.888 0.997 0.739 0.0
356557975554 PREDICTED: transcriptional adapter ADA2b 0.929 0.935 0.682 0.0
356532351497 PREDICTED: transcriptional adapter ADA2b 0.890 0.997 0.712 0.0
357447981551 Histone acetyltransferase complex compon 0.915 0.925 0.653 0.0
312282909487 unnamed protein product [Thellungiella h 0.863 0.987 0.659 0.0
>gi|255563796|ref|XP_002522899.1| transcriptional adaptor, putative [Ricinus communis] gi|223537884|gb|EEF39499.1| transcriptional adaptor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/547 (73%), Positives = 458/547 (83%), Gaps = 32/547 (5%)

Query: 37  MGRSRGNFHANDEDPTQRSRRKKNVSS-DNSDTAAPGQGAGEGKRALYHCNYCNKDITGK 95
           MGRSRG FH+ DEDP QRSRRKKN +S +N ++++ GQG  EGKRALYHCNYCNKDITGK
Sbjct: 1   MGRSRGKFHSADEDPIQRSRRKKNAASGENLESSSVGQGTSEGKRALYHCNYCNKDITGK 60

Query: 96  IRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGI 155
           IRIKCA+CPDFDLCIECFSVG EV PHKSNHPY+VMDNLSFPLICP+WNADDE LLLEGI
Sbjct: 61  IRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYKVMDNLSFPLICPNWNADDETLLLEGI 120

Query: 156 EMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGH 215
           EMYGLGNW E+AEHVGTK+KE+CIEHYTN+YMNSPFFPLPDMSHVVGKNRKELLAMA+GH
Sbjct: 121 EMYGLGNWTEVAEHVGTKSKEMCIEHYTNIYMNSPFFPLPDMSHVVGKNRKELLAMAQGH 180

Query: 216 IDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNA----------------- 258
            +DKKG S  GE T+KEESPFSPSRVK     + G     LNA                 
Sbjct: 181 GEDKKGSSMLGEHTLKEESPFSPSRVKYAFYVESGIRPNSLNAAATSAIKKASKIARVKD 240

Query: 259 --------DPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEME 310
                   +PQT+RS KGKKP +SG +G SL+E SGYN+KRQEFDPEYDNDAEQLLAEM+
Sbjct: 241 GSNIVKVEEPQTDRSFKGKKPNSSGKNG-SLIESSGYNAKRQEFDPEYDNDAEQLLAEMD 299

Query: 311 FKDADSEEERDIKLRVLRIYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRY 370
           FKD D+E+ER++KLRVLRIYSKRLDERKRRKDFILERNLLYPN FEKDLSPEE+ LCRRY
Sbjct: 300 FKDTDTEDERELKLRVLRIYSKRLDERKRRKDFILERNLLYPNLFEKDLSPEEKALCRRY 359

Query: 371 DVFMRFHSKEDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEE 430
           DVFMRFHSKE+HE+LLQTVISEHRTLKRIQ+LKEARAAGC +SA+ADRYLE KR REAEE
Sbjct: 360 DVFMRFHSKEEHEELLQTVISEHRTLKRIQELKEARAAGCHSSADADRYLEQKRKREAEE 419

Query: 431 ASRRAKEGGHAGASSQGGANVFMASESLRKDSNSNSRPSGQASSSHVNDLYIMGFNETQL 490
           +S+RAKE G  G S+QGG NVF+ S+S+ KD  SNSRP+GQ   S+VNDL  +GF+E QL
Sbjct: 420 SSQRAKESGQVGPSNQGGPNVFIGSDSISKD--SNSRPAGQ---SYVNDLERLGFSEAQL 474

Query: 491 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLV 550
           L+E+EKRLC EI+L P +YL+MQEVM++EIF GNV  KADAH LFK+E SK+DRVYD+LV
Sbjct: 475 LTESEKRLCQEIKLPPAVYLKMQEVMTKEIFIGNVTKKADAHPLFKLEASKVDRVYDVLV 534

Query: 551 KKGLAPP 557
           KKG+A P
Sbjct: 535 KKGIAQP 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359495620|ref|XP_002262737.2| PREDICTED: transcriptional adapter ADA2b-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736705|emb|CBI25741.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443500|ref|XP_004139515.1| PREDICTED: transcriptional adapter ADA2b-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224139474|ref|XP_002323129.1| histone acetyltransferase complex component [Populus trichocarpa] gi|222867759|gb|EEF04890.1| histone acetyltransferase complex component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224086542|ref|XP_002307906.1| histone acetyltransferase complex component [Populus trichocarpa] gi|222853882|gb|EEE91429.1| histone acetyltransferase complex component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356557975|ref|XP_003547285.1| PREDICTED: transcriptional adapter ADA2b-like [Glycine max] Back     alignment and taxonomy information
>gi|356532351|ref|XP_003534737.1| PREDICTED: transcriptional adapter ADA2b-like [Glycine max] Back     alignment and taxonomy information
>gi|357447981|ref|XP_003594266.1| Histone acetyltransferase complex component [Medicago truncatula] gi|355483314|gb|AES64517.1| Histone acetyltransferase complex component [Medicago truncatula] Back     alignment and taxonomy information
>gi|312282909|dbj|BAJ34320.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
TAIR|locus:2130609487 ADA2B "homolog of yeast ADA2 2 0.651 0.745 0.692 4.1e-175
DICTYBASE|DDB_G0280079914 ada2 "transcriptional adapter 0.635 0.387 0.374 1.3e-72
SGD|S000002856434 ADA2 "Transcription coactivato 0.290 0.373 0.372 2.3e-62
CGD|CAL0000716445 ADA2 [Candida albicans (taxid: 0.219 0.274 0.442 1e-58
UNIPROTKB|Q59WH0445 ADA2 "Putative uncharacterized 0.219 0.274 0.442 1e-58
GENEDB_PFALCIPARUM|PF10_0143 2578 PF10_0143 "transcriptional act 0.479 0.103 0.293 3.3e-50
UNIPROTKB|Q8IJP9 2578 PF10_0143 "Transcriptional act 0.479 0.103 0.293 3.3e-50
UNIPROTKB|G4N4E8546 MGG_05099 "Transcriptional ada 0.556 0.567 0.341 6.7e-43
POMBASE|SPCC24B10.08c437 ada2 "SAGA complex subunit Ada 0.332 0.423 0.360 2.6e-39
MGI|MGI:2144471443 Tada2a "transcriptional adapto 0.190 0.239 0.418 2.9e-39
TAIR|locus:2130609 ADA2B "homolog of yeast ADA2 2B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1386 (493.0 bits), Expect = 4.1e-175, Sum P(2) = 4.1e-175
 Identities = 268/387 (69%), Positives = 318/387 (82%)

Query:    37 MGRSRGNFHANDEDPTQRSRRKKNVSS-DNSDTAAPGQGA-GEGKRALYHCNYCNKDITG 94
             MGRSRGNF  N EDPTQR+R+KKN ++ +N ++ +   GA G GK   Y+C+YC KDITG
Sbjct:     1 MGRSRGNFQ-NFEDPTQRTRKKKNAANVENFESTSLVPGAEGGGK---YNCDYCQKDITG 56

Query:    95 KIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEG 154
             KIRIKCAVCPDFDLCIEC SVG E+ PHK +HPYRVM NL+FPLICPDW+ADDE+LLLEG
Sbjct:    57 KIRIKCAVCPDFDLCIECMSVGAEITPHKCDHPYRVMGNLTFPLICPDWSADDEMLLLEG 116

Query:   155 IEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKG 214
             +E+YGLGNWAE+AEHVGTK+KE C+EHY N+Y+NSPFFPLPDMSHV GKNRKEL AMAKG
Sbjct:   117 LEIYGLGNWAEVAEHVGTKSKEQCLEHYRNIYLNSPFFPLPDMSHVAGKNRKELQAMAKG 176

Query:   215 HIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNADPQTERSSKGKKPV-T 273
              IDDKK      E  +KEE PFSP +VK+E+  K          +   +RS  GKKPV T
Sbjct:   177 RIDDKKA-----EQNMKEEYPFSPPKVKVEDTQK----------ESFVDRSFGGKKPVST 221

Query:   274 SGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDIKLRVLRIYSKR 333
             S N+  SLVELS YN KR+EFDPEYDNDAEQLLAEMEFK+ D+ EE ++KLRVLRIYSKR
Sbjct:   222 SVNN--SLVELSNYNQKREEFDPEYDNDAEQLLAEMEFKENDTPEEHELKLRVLRIYSKR 279

Query:   334 LDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEH 393
             LDERKRRK+FI+ERNLLYPNPFEKDLS EE+  CRR DVFMRFHSKE+H++LL+ V+SE+
Sbjct:   280 LDERKRRKEFIIERNLLYPNPFEKDLSQEEKVQCRRLDVFMRFHSKEEHDELLRNVVSEY 339

Query:   394 RTLKRIQDLKEARAAGCRTSAEADRYL 420
             R +KR++DLKEA+ AGCR++AEA+RYL
Sbjct:   340 RMVKRLKDLKEAQVAGCRSTAEAERYL 366
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009631 "cold acclimation" evidence=IMP
GO:0003713 "transcription coactivator activity" evidence=IDA
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009735 "response to cytokinin stimulus" evidence=IMP
GO:0042127 "regulation of cell proliferation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
DICTYBASE|DDB_G0280079 ada2 "transcriptional adapter 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000002856 ADA2 "Transcription coactivator" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0000716 ADA2 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59WH0 ADA2 "Putative uncharacterized protein ADA2" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0143 PF10_0143 "transcriptional activator ADA2, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IJP9 PF10_0143 "Transcriptional activator ADA2, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|G4N4E8 MGG_05099 "Transcriptional adapter 2" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPCC24B10.08c ada2 "SAGA complex subunit Ada2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
MGI|MGI:2144471 Tada2a "transcriptional adaptor 2A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q75LL6TADA2_ORYSJNo assigned EC number0.57240.92280.9065yesno
Q9ATB4TAD2B_ARATHNo assigned EC number0.65510.86530.9897yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00009957001
SubName- Full=Chromosome undetermined scaffold_1717, whole genome shotgun sequence; Flags- Fragment; (483 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
COG5114432 COG5114, COG5114, Histone acetyltransferase comple 1e-78
cd0233549 cd02335, ZZ_ADA2, Zinc finger, ZZ type 5e-27
cd0224946 cd02249, ZZ, Zinc finger, ZZ type 8e-13
smart0029144 smart00291, ZnF_ZZ, Zinc-binding domain, present i 3e-12
COG5259531 COG5259, RSC8, RSC chromatin remodeling complex su 6e-12
pfam0443380 pfam04433, SWIRM, SWIRM domain 1e-10
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-10
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 6e-10
pfam0056946 pfam00569, ZZ, Zinc finger, ZZ type 1e-09
cd0234043 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type 2e-09
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 3e-09
cd0233849 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type 9e-08
cd0234549 cd02345, ZZ_dah, Zinc finger, ZZ type 3e-07
cd0233741 cd02337, ZZ_CBP, Zinc finger, ZZ type 5e-07
cd0233945 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type 2e-05
cd0233449 cd02334, ZZ_dystrophin, Zinc finger, ZZ type 3e-05
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 1e-04
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 0.001
cd0233645 cd02336, ZZ_RSC8, Zinc finger, ZZ type 0.002
>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information 
 Score =  253 bits (647), Expect = 1e-78
 Identities = 140/484 (28%), Positives = 214/484 (44%), Gaps = 76/484 (15%)

Query: 83  YHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPD 142
            HC+ C  D+T    IKC  CP  DLC+ CF  G+E   H   H YR+++  S+P+    
Sbjct: 6   IHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRIIETNSYPIGEEG 65

Query: 143 WNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVG 202
           W AD+E+LL+E ++  GLGNW +IA+++G++ KE    HY  +Y  S ++PLPD++  + 
Sbjct: 66  WGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDESKYYPLPDITQNIH 125

Query: 203 KNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSRVKIEEMHKVGPSGRGLNADPQT 262
             + E L   +  I+              E  P +P                        
Sbjct: 126 VPQDEFLEQRRHRIE------------TFELPPINP------------------------ 149

Query: 263 ERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEERDI 322
                 +KP  S    P   E+ GY   R EFD EY N+AE  + +M F     E ++ +
Sbjct: 150 ------RKPKAS---NPYCHEIQGYMPGRLEFDVEYMNEAEVPIKDMSFDGDKEELKKKL 200

Query: 323 KLRVLRIYSKRLDERKRRKDFILERNLL-YPN--PFEKDLSPEERELCRRYDVFMRFHSK 379
           K   L IY+ RL  R RRK  I  +NL+ Y N    +K  S EE  L      F R+ +K
Sbjct: 201 KNATLDIYNSRLTFRARRKHAIFGKNLMDYRNLQAKDKKRSKEECGLVNSIKWFARYLTK 260

Query: 380 EDHEDLLQTVISEHRTLKRIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAKEGG 439
            D     + ++      KRI +L+E R  G  T     +Y          E  +  K G 
Sbjct: 261 SDFNVFFRDILEGVYIEKRIHELQEWRNNGLTTLEAGLKY----------ERDKFEKFGA 310

Query: 440 HAGASSQGGANVFMASESLRKDSNSNSRPSGQASSSHVNDL---------YIMGFNETQL 490
              AS   G        + R  SNS  R + + S   V ++          I    +  L
Sbjct: 311 STAASLSEG--------NSRYRSNSAHRSNAEYSQMDVKNILPSKNMTISDIQHAPDYAL 362

Query: 491 LSEAEKRLCCEIRLAPPLYLRMQEVMSRE-IFSGNVNNKADAHHLFKIEPSKIDRVYDML 549
           LS+ E+RLC  + ++P  YL +++ +    + +     K D + LF I+  K D +YD  
Sbjct: 363 LSDDEQRLCETLNISPKPYLELKKEVISCFLRTRGEFTKEDFNRLFGIDLGKADGLYDFF 422

Query: 550 VKKG 553
           +++G
Sbjct: 423 LERG 426

Length = 432
>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|203011 pfam04433, SWIRM, SWIRM domain Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239085 cd02345, ZZ_dah, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239077 cd02337, ZZ_CBP, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239079 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|239076 cd02336, ZZ_RSC8, Zinc finger, ZZ type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 100.0
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 100.0
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 99.69
PF0443386 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM 99.48
cd0233549 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present 99.47
KOG1279506 consensus Chromatin remodeling factor subunit and 99.4
cd0234348 ZZ_EF Zinc finger, ZZ type. Zinc finger present in 99.32
cd0233849 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre 99.26
cd0233449 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr 99.25
cd0234549 ZZ_dah Zinc finger, ZZ type. Zinc finger present i 99.23
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 99.11
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.09
cd0234043 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre 99.02
cd0234148 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present 99.01
cd0233645 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present 98.98
cd0234445 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present 98.91
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 98.88
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 98.85
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 98.79
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.67
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.63
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 98.57
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.56
cd0233741 ZZ_CBP Zinc finger, ZZ type. Zinc finger present i 98.54
cd0234243 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre 98.44
PLN03212249 Transcription repressor MYB5; Provisional 98.16
KOG1280381 consensus Uncharacterized conserved protein contai 98.13
KOG4582278 consensus Uncharacterized conserved protein, conta 98.03
KOG4286966 consensus Dystrophin-like protein [Cell motility; 97.94
PLN03091459 hypothetical protein; Provisional 97.9
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.73
PLN03212249 Transcription repressor MYB5; Provisional 97.55
KOG4301434 consensus Beta-dystrobrevin [Cytoskeleton] 97.31
PLN03091459 hypothetical protein; Provisional 97.18
KOG0048238 consensus Transcription factor, Myb superfamily [T 96.71
KOG0049 939 consensus Transcription factor, Myb superfamily [T 96.15
KOG0049 939 consensus Transcription factor, Myb superfamily [T 95.52
KOG0051607 consensus RNA polymerase I termination factor, Myb 94.12
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 93.2
PF0764930 C1_3: C1-like domain; InterPro: IPR011424 This sho 91.26
PF0310730 C1_2: C1 domain; InterPro: IPR004146 This short do 90.77
KOG0051607 consensus RNA polymerase I termination factor, Myb 89.15
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 88.66
COG5147512 REB1 Myb superfamily proteins, including transcrip 85.61
PF0220771 zf-UBR: Putative zinc finger in N-recognin (UBR bo 83.62
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 82.47
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 82.18
KOG1778319 consensus CREB binding protein/P300 and related TA 81.0
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-107  Score=845.25  Aligned_cols=420  Identities=51%  Similarity=0.850  Sum_probs=371.7

Q ss_pred             CCccccccccccCCceeEEcCCCCCcccchhhhhcccccCCCCCCCCcccccCCCCCcCCCCCCchhHHHHHHHHHHhCC
Q 008687           81 ALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGL  160 (557)
Q Consensus        81 ~~~~Cd~C~~di~~~~ri~C~~C~d~dLC~~CF~~G~e~~~Hk~~H~Y~vi~~~~~p~~~~~Wta~Eel~LLeaie~~G~  160 (557)
                      ..|+|++|..+|++.+||+|++|+|||||+.||+.|+|++.|+++|+|+||++++||+.+++|||+||++||+|++.|||
T Consensus        13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~~s~~i~~~~WtadEEilLLea~~t~G~   92 (438)
T KOG0457|consen   13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDTNSFPILDPSWTADEEILLLEAAETYGF   92 (438)
T ss_pred             CCCCCccHhHHhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecCCCCCCCCCCCChHHHHHHHHHHHHhCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHhCCCCHHHHHHHHHhhccCCCCCCCCCcccccccchHHHHHHhccCcCCCCCCCCCCCCCccCCCCCCCch
Q 008687          161 GNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSHVVGKNRKELLAMAKGHIDDKKGPSKPGEATVKEESPFSPSR  240 (557)
Q Consensus       161 gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~~~~plp~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~p~~  240 (557)
                      |||++||+||||||.+||++||.++|++++++|+|++++.+|+++.+++++++.+.                 .|+.|..
T Consensus        93 GNW~dIA~hIGtKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~~~-----------------~~~~~~~  155 (438)
T KOG0457|consen   93 GNWQDIADHIGTKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKNRA-----------------EPFQPTD  155 (438)
T ss_pred             CcHHHHHHHHcccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhccccc-----------------ccCCCCC
Confidence            99999999999999999999999999999999999999999999999999877632                 2344321


Q ss_pred             hhhhhhhcCCCCCCCCCCCCccccccCCCCCCCCCCCCCCccccccccCCCCCCCcccCcchHhhhhccccCCCCCHHHH
Q 008687          241 VKIEEMHKVGPSGRGLNADPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSEEER  320 (557)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~e~~GYmP~R~DFE~EydNdAE~ll~dmeF~~~D~~~e~  320 (557)
                      .                            -|+.++..+|..++++||||+|.|||.||||+||++|+||+|+++|+|.++
T Consensus       156 ~----------------------------~pr~p~~~~p~~~e~~gyMp~R~dFd~Eydn~AE~li~dm~f~e~D~~~d~  207 (438)
T KOG0457|consen  156 L----------------------------VPRKPGVSNPLRREISGYMPGRLDFDEEYDNEAEQLIRDMEFEEDDTEEDH  207 (438)
T ss_pred             C----------------------------CCCCCCCCCchHHHHhhhCccchhhhhhhcchhhhhHhhcccCCCCcHHHH
Confidence            0                            133344457889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CCCCCCCChhHHHHHHhhccccccCChhHHHHHHHHHHHHHHHHH
Q 008687          321 DIKLRVLRIYSKRLDERKRRKDFILERNLLYP---NPFEKDLSPEERELCRRYDVFMRFHSKEDHEDLLQTVISEHRTLK  397 (557)
Q Consensus       321 elKL~~l~iYn~rL~ER~rRK~~i~er~Ll~~---~~~~k~~skeerel~~rlk~Farf~s~ed~e~l~~~L~~E~~Lr~  397 (557)
                      +||+++|+|||+||+||.|||++|+||||+++   |++++++|+|||++++++|+||||+|+.||++|+.+++.|.+|+.
T Consensus       208 elKla~ldiY~srl~eR~RRK~~I~d~nLl~~rk~q~~e~~~skEer~l~~s~k~fAR~~t~~d~~kfl~~~~eE~~L~~  287 (438)
T KOG0457|consen  208 ELKLAVLDIYNSRLKERKRRKRFIRDRNLLDYRKNQAMEKRLSKEERELYNSIKVFARFLTKSDHDKFLGSVAEEKELRK  287 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHhhccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999995   889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhhHHHHHHHHhhcCCCCCCCCCCCCcccccccccccCCCCC-CCC-CCCCCCC
Q 008687          398 RIQDLKEARAAGCRTSAEADRYLELKRGREAEEASRRAKEGGHAGASSQGGANVFMASESLRKDSNSN-SRP-SGQASSS  475 (557)
Q Consensus       398 RI~eLqeyR~~Gi~tl~e~~~Ye~~k~~Re~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~  475 (557)
                      ||++|||||.+|+||++++.+|+.+|.++ .+.+......+++...-    .     . +.....++. .++ ..+.+.+
T Consensus       288 ri~~lqE~R~ag~tt~~e~~ky~~~k~~~-~~~s~~~~~~~~~~~~i----~-----~-~~~~~~~~~~~~~v~~~~~~~  356 (438)
T KOG0457|consen  288 RISDLQEYRSAGLTTNAEPNKYERLKFKE-FRESTALLLSSGALRYI----K-----N-SNQEASGSASKRPVQQQSIYK  356 (438)
T ss_pred             HHHHHHHHHHhcceeccccchhHHHHHHH-HHHHhhhccccchhhhh----h-----c-cccccccccccCccccccccc
Confidence            99999999999999999999999999443 33332222222111000    0     0 011111111 122 2334566


Q ss_pred             CCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCC
Q 008687          476 HVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA  555 (557)
Q Consensus       476 ~~~~~~i~~~pg~~LLs~~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~Gwi  555 (557)
                      +++++++.++++.++||++|++||+.++++|.+||.+|++|++|..++|.+++++|+.|||||++|+++|||||+++||+
T Consensus       357 ~~~~~~~~~~~~~q~Lse~E~~lc~~~~~~p~~yLe~~~vl~~e~~k~~~~kks~a~~l~Kid~~Kvd~vyd~~~~~~~~  436 (438)
T KOG0457|consen  357 SATPLDISGAPDTQLLSEDEKRLCQELKILPKLYLELKEVLSREIKKGGTLKKSDAYRLFKIDPRKVDRVYDFLIAQGWI  436 (438)
T ss_pred             CCCHHHHhcchhhhhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHhccCcccchhHHHHhcCCcchHHHHHHHHHHhhhc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 008687          556 P  556 (557)
Q Consensus       556 ~  556 (557)
                      .
T Consensus       437 ~  437 (438)
T KOG0457|consen  437 G  437 (438)
T ss_pred             c
Confidence            6

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins Back     alignment and domain information
>cd02335 ZZ_ADA2 Zinc finger, ZZ type Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>cd02343 ZZ_EF Zinc finger, ZZ type Back     alignment and domain information
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type Back     alignment and domain information
>cd02334 ZZ_dystrophin Zinc finger, ZZ type Back     alignment and domain information
>cd02345 ZZ_dah Zinc finger, ZZ type Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type Back     alignment and domain information
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type Back     alignment and domain information
>cd02336 ZZ_RSC8 Zinc finger, ZZ type Back     alignment and domain information
>cd02344 ZZ_HERC2 Zinc finger, ZZ type Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>cd02337 ZZ_CBP Zinc finger, ZZ type Back     alignment and domain information
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines Back     alignment and domain information
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
2elk_A58 Solution Structure Of The Sant Domain Of Fission Ye 1e-08
1x41_A60 Solution Structure Of The Myb-Like Dna Binding Doma 4e-06
2elj_A88 Solution Structure Of The Swirm Domain Of Baker's Y 2e-05
2cuj_A108 Solution Structure Of Swirm Domain Of Mouse Transcr 4e-05
2aqe_A90 Structural And Functional Analysis Of Ada2 Alpha Sw 5e-05
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast Spcc24b10.08c Protein Length = 58 Back     alignment and structure 
Iteration: 1

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 142 DWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYM 187
           +W AD+E+LL++  E  GLGNWA+IA++VG  +TKE C +HY   Y+
Sbjct: 11  NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of Human Transcriptional Adaptor 2-Like, Isoform B Length = 60 Back     alignment and structure
>pdb|2ELJ|A Chain A, Solution Structure Of The Swirm Domain Of Baker's Yeast Transcriptional Adapter 2 Length = 88 Back     alignment and structure
>pdb|2CUJ|A Chain A, Solution Structure Of Swirm Domain Of Mouse Transcriptional Adaptor 2-Like Length = 108 Back     alignment and structure
>pdb|2AQE|A Chain A, Structural And Functional Analysis Of Ada2 Alpha Swirm Domain Length = 90 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
2aqe_A90 Transcriptional adaptor 2, ADA2 alpha; helix-turn- 6e-23
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 6e-23
2cuj_A108 Transcriptional adaptor 2-like; transcriptional re 8e-23
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 2e-22
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 2e-21
2elj_A88 Transcriptional adapter 2; YDR448W, structural gen 3e-21
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 1e-19
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 2e-14
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 5e-14
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 3e-10
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 1e-06
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 2e-06
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 4e-05
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 4e-05
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 7e-05
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 9e-05
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 1e-04
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 3e-04
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 4e-04
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 9e-04
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 8e-04
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 8e-04
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 9e-04
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A Length = 90 Back     alignment and structure
 Score = 92.2 bits (229), Expect = 6e-23
 Identities = 25/85 (29%), Positives = 39/85 (45%)

Query: 469 SGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNK 528
              +       L + G   T+ L+E EK LC  +RL P  YL  +  +  E         
Sbjct: 1   GSNSGRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRL 60

Query: 529 ADAHHLFKIEPSKIDRVYDMLVKKG 553
           A A  L KI+ +K  ++YD L+++G
Sbjct: 61  AQARALIKIDVNKTRKIYDFLIREG 85
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18 Length = 108 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} Length = 88 Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 82 Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52 Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 98 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
2cuj_A108 Transcriptional adaptor 2-like; transcriptional re 99.94
2aqe_A90 Transcriptional adaptor 2, ADA2 alpha; helix-turn- 99.93
2elj_A88 Transcriptional adapter 2; YDR448W, structural gen 99.93
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.56
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.45
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.39
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 99.33
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 99.18
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.04
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.03
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 98.99
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 98.99
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 98.99
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 98.98
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 98.91
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 98.9
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 98.89
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 98.87
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 98.85
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.78
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 98.77
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.74
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.08
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 98.63
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 98.61
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.61
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.59
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.51
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.5
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.48
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.48
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.41
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.38
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.38
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.38
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.32
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.31
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 98.28
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.27
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.24
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.22
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 98.2
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.19
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 97.99
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 97.96
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.95
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.81
2crg_A70 Metastasis associated protein MTA3; transcription 97.74
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 97.66
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.63
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 97.43
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 96.09
2fq3_A104 Transcription regulatory protein SWI3; four-helix 96.02
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 95.89
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 95.8
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 95.65
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 95.45
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 95.07
2dce_A111 KIAA1915 protein; swirm domain, structural genomic 94.89
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 94.28
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 93.56
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 93.26
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 92.22
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 92.4
3ny3_A75 E3 ubiquitin-protein ligase UBR2; zinc finger-like 90.38
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 89.06
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 87.89
3nis_A82 E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig 87.73
1v5n_A89 PDI-like hypothetical protein AT1G60420; DC1 domai 87.55
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 86.39
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18 Back     alignment and structure
Probab=99.94  E-value=5.4e-27  Score=205.93  Aligned_cols=99  Identities=27%  Similarity=0.400  Sum_probs=87.8

Q ss_pred             ccCCCCCCCCCCC--CCCCCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc
Q 008687          459 RKDSNSNSRPSGQ--ASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK  536 (557)
Q Consensus       459 ~~~~~~~~~~~~~--~~~~~~~~~~i~~~pg~~LLs~~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~k  536 (557)
                      |.++|.++.....  ..++.+.+|||.++||++|||++|++||+++||+|.+||.+|++||+|+.++|.++++||+.+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~r~~~~~ldi~~~pg~~LLs~~E~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~k   86 (108)
T 2cuj_A            7 GIDSGLSPSVLMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIK   86 (108)
T ss_dssp             CCCCCCCCCCCCCCCCCCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT
T ss_pred             ccccCCCccccccCCCCCCCCCccCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhc
Confidence            3344444444332  45677899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHCCCCCC
Q 008687          537 IEPSKIDRVYDMLVKKGLAPP  557 (557)
Q Consensus       537 iD~~K~~rIydFlv~~Gwi~~  557 (557)
                      ||++|+++|||||+++|||++
T Consensus        87 ID~~K~~rIydff~~~GWi~~  107 (108)
T 2cuj_A           87 IDVNKTRKIYDFLIREGYITK  107 (108)
T ss_dssp             SCHHHHHHHHHHHHTTTSSCC
T ss_pred             ccHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999974
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A Back     alignment and structure
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A Back     alignment and structure
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 557
d2cuja1101 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, 5e-23
d2fc7a169 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing p 2e-15
d1tota152 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse 1e-14
d2dipa185 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing p 5e-11
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 4e-10
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 5e-06
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 8e-06
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 1e-05
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 8e-05
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 9e-05
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 1e-04
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 9e-04
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 0.001
d2cqqa159 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 0.001
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcriptional adaptor 2-like, TADA2L
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.4 bits (227), Expect = 5e-23
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 455 SESLRKDSNSNSRPSGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQE 514
           S S+   SNS  R +          L + G   T+ L+E EK LC  +RL P  YL  + 
Sbjct: 6   SPSVLMASNSGRRSA--------PPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKS 57

Query: 515 VMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKG 553
            +  E         A A  L KI+ +K  ++YD L+++G
Sbjct: 58  ALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREG 96
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
d2cuja1101 Transcriptional adaptor 2-like, TADA2L {Mouse (Mus 99.94
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.51
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.15
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.14
d2fc7a169 Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu 99.05
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.0
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.88
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 98.85
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.83
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.83
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 98.82
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.75
d1tota152 CREB-binding protein, CBP {Mouse (Mus musculus) [T 98.68
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.67
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 98.61
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 98.51
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 98.25
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.22
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.59
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.5
d2fq3a185 Transcription regulatory protein swi3 {Baker's yea 97.28
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.2
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 96.87
d2dw4a1102 Lysine-specific histone demethylase 1, LSD1 {Human 96.07
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 95.48
d1v5na_89 Pdi-like hypothetical protein At1g60420 {Thale cre 93.66
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 82.15
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcriptional adaptor 2-like, TADA2L
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.4e-27  Score=201.27  Aligned_cols=84  Identities=30%  Similarity=0.487  Sum_probs=80.9

Q ss_pred             CCCCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHC
Q 008687          473 SSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKK  552 (557)
Q Consensus       473 ~~~~~~~~~i~~~pg~~LLs~~Ek~LC~~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kiD~~K~~rIydFlv~~  552 (557)
                      .++..+||||+++||++|||++|++||+++||+|.+||.+|++||+|++++|.++++||+.++|||++|+++|||||+++
T Consensus        16 ~rk~~~pldi~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~l~~E~~k~g~l~k~da~~~~kiD~~K~~rIydfl~~~   95 (101)
T d2cuja1          16 GRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIRE   95 (101)
T ss_dssp             CCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCccCCCChhhcCHHHHHHHHHhCCChHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHHc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 008687          553 GLAP  556 (557)
Q Consensus       553 Gwi~  556 (557)
                      |||+
T Consensus        96 GWi~   99 (101)
T d2cuja1          96 GYIT   99 (101)
T ss_dssp             TSSC
T ss_pred             cCcc
Confidence            9996
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure