Citrus Sinensis ID: 008719
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 556 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYR6 | 624 | Probable peptide/nitrate | yes | no | 0.973 | 0.866 | 0.806 | 0.0 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.935 | 0.912 | 0.414 | 1e-121 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.940 | 0.917 | 0.411 | 1e-116 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.937 | 0.890 | 0.406 | 1e-112 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.901 | 0.849 | 0.409 | 1e-107 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.866 | 0.884 | 0.368 | 3e-95 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.953 | 0.889 | 0.362 | 5e-94 | |
| Q9FNL7 | 582 | Peptide transporter PTR3- | no | no | 0.962 | 0.919 | 0.364 | 1e-93 | |
| Q9FNL8 | 586 | Peptide transporter PTR3- | no | no | 0.967 | 0.918 | 0.355 | 3e-92 | |
| Q9M1I2 | 555 | Probable peptide/nitrate | no | no | 0.931 | 0.933 | 0.343 | 9e-91 |
| >sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/543 (80%), Positives = 489/543 (90%), Gaps = 2/543 (0%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 79 MAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITG
Sbjct: 139 IAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITG 198
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GW
Sbjct: 199 FGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGW 258
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
G AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IG
Sbjct: 259 GMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIG 318
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
LYEVPG SAI GS KI H++DF LDKAALELKED + PSPWKLCTVTQVEEVK L+RL
Sbjct: 319 LYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRL 378
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST 360
+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTCMPVFPGLSIFLILSLYYS
Sbjct: 379 IPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSV 438
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WAG+FE YRR+YAI +G+EF+FLT MP
Sbjct: 439 FVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMP 498
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
DL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA+ILN
Sbjct: 499 DLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILN 558
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 540
+I+K+ T + +WL+QNINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+ +
Sbjct: 559 NIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRAIESE 616
Query: 541 GND 543
+
Sbjct: 617 EDK 619
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/538 (41%), Positives = 333/538 (61%), Gaps = 18/538 (3%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ER+AY+G+ N+V ++ +++ A ++N V N+ G + ++G F+ADAYLGRYWTIA
Sbjct: 41 ERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIA 100
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
F IY++G+T +TL A++ P N D +C P S Q + LY+ G
Sbjct: 101 TFVFIYVSGMTLLTLSASVPGLKPGNCNAD-------TCHPNSS-QTAVFFVALYMIALG 152
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
GI+PCVSSFGADQFDE ++ K FFN+FY S+ VGA++A T++V+IQM GWG
Sbjct: 153 TGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGW 212
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
FG +AM I+ FF G+ YR + PGGSPLTR+ QV+VAAFRK + + L+
Sbjct: 213 GFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LF 271
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINP---SPWKLCTVTQVEEVKTLVR 299
E S IKGS K+ HTD+ + DKAA+E + D I +PW+LC+VTQVEE+K+++
Sbjct: 272 ETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIIT 331
Query: 300 LVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYY 358
L+P+ A I+ + ++ T+ V Q TM+ HMGK ++P + +F +S+ +Y
Sbjct: 332 LLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYD 391
Query: 359 STFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418
+PL R+ T + RG +QLQR+GIGL VSI ++I AG+ E R +Y +H ++
Sbjct: 392 QFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHN---AYDQK 448
Query: 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 478
+S +W + QY LIG AEVF +G LEF Y++APDAM+S+ SA + LG + +++
Sbjct: 449 QIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTV 508
Query: 479 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 536
L +++ +T K G+P W+ N+N G DY ++LLA LS +NF +L+ + RYKY+
Sbjct: 509 LVTVVMKIT--KKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKK 564
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/542 (41%), Positives = 322/542 (59%), Gaps = 19/542 (3%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ER+AY+G+S N++ ++ M+ +S +V+N+ G A+ ++G F+ADAYLGRYWTIA
Sbjct: 42 ERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIA 101
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
F IY+AG+T +T+ A++ P C G A + Q + LY+ G
Sbjct: 102 SFVVIYIAGMTLLTISASVPGLTPT---CS------GETCHATAGQTAITFIALYLIALG 152
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
GI+PCVSSFGADQFD+ + K FFN+FY + VGA++A +++V+IQM GWG
Sbjct: 153 TGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGW 212
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
G +AM I+ + FF G+ YR + PGGSPLTR+ QV+VA+ RK E + LY
Sbjct: 213 GLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LY 271
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWKLCTVTQVEEVKTLVR 299
E S+I GS K+ HT DKAA+E + D S WKLCTVTQVEE+K L+R
Sbjct: 272 ENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIR 331
Query: 300 LVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG-KLKLPVTCMPVFPGLSIFLILSLYY 358
L+PI A I+ + ++ T+ V Q T++ HMG K+P + +F LS+ +Y
Sbjct: 332 LLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYD 391
Query: 359 STFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418
VP R+ TGH RG +QLQR+GIGL +SI S++ AGI E R NY +H +
Sbjct: 392 KLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNL---YNEE 448
Query: 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 478
++ +W + QY L+G AEVF +G LEF Y++APDAM+S+ SA + A G + ++
Sbjct: 449 TIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTF 508
Query: 479 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 538
L +++ VT + G+P W+A+N+N G DY +WLLA LS +NF +L+ A Y Y+
Sbjct: 509 LVTLVTKVTRS--GGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTT 566
Query: 539 KH 540
H
Sbjct: 567 GH 568
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 218/536 (40%), Positives = 323/536 (60%), Gaps = 15/536 (2%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ER+AY+G++ N++T++ +H+ ++ V + G + ++G LADAY GRYWTIA
Sbjct: 58 ERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIA 117
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
F+ IY G++ +TL A++ P + C I S PA Q + LY+ G
Sbjct: 118 CFSGIYFIGMSALTLSASVPALKPAE--C--IGDFCPSATPA---QYAMFFGGLYLIALG 170
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
GI+PCVSSFGADQFD+ + FFN+FY S+ +GA+V+ +L+V+IQ GWG
Sbjct: 171 TGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGL 230
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
FG + MG++ FF GTPLYR + PGGSP+TR++QV+VA+FRK + LY
Sbjct: 231 GFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATL-LY 289
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN---PSPWKLCTVTQVEEVKTLVR 299
E K+SAI GS KI HTDD + LDKAA+ +E+ + + W+LCTVTQVEE+K L+R
Sbjct: 290 ETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIR 349
Query: 300 LVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYS 359
+ PI A I+ + + + T+ VQQ MN +G +LP + F S+ + + LY
Sbjct: 350 MFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDR 409
Query: 360 TFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 419
VPL R+ TG +G +++QR+GIGL VS+L + A I E R + A G S A
Sbjct: 410 FIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVES--GAP 467
Query: 420 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASIL 479
+S W + QY ++G AEVF +G LEF Y+++PDAM+S+ SA A L LG + +S++
Sbjct: 468 VPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLI 527
Query: 480 NSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 535
+++ T + GQ W++ N+N+G DY +WLLA LS++N + +SA RYK +
Sbjct: 528 LTLVTYFT--TRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 214/523 (40%), Positives = 310/523 (59%), Gaps = 22/523 (4%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ER+AY+G++ N++T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA
Sbjct: 69 ERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIA 128
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
F+ IY G+ +TL A++ V P C PA + Q +T LY+ G
Sbjct: 129 SFSAIYFIGMALLTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALG 184
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
GI+PCVSSFGADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG
Sbjct: 185 TGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGL 244
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
F + MG+S FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LY
Sbjct: 245 GFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLY 303
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLV 298
E K+S I GS KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+
Sbjct: 304 ETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLI 362
Query: 299 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYY 358
R+ PI A I+ +V+ ++ TL VQQ +MN + ++P VF L + + + +Y
Sbjct: 363 RMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYD 422
Query: 359 STFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418
VP RR TG P+G + LQR+GIGL +S+LS+ A I E R A A
Sbjct: 423 RFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQD-------FVA 475
Query: 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 478
M S +W + QY L+GIAEVF +G +EF Y+E+PDAM+S+ SA A L +G + +S+
Sbjct: 476 M---SIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSL 532
Query: 479 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 521
+ +++ T G+ W+ ++N G DY +WLL L ++N
Sbjct: 533 ILTLVAYFTA--LGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 197/534 (36%), Positives = 301/534 (56%), Gaps = 52/534 (9%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ER+AY+G++ N++T+ +H++ ++ V + G + ++G +ADAY GRYWTIA
Sbjct: 59 ERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIA 118
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS-CEPAKSWQMLYLYTVLYITGF 121
F+ IY G+ +TL A++ P ++ +GS C PA Q L++ LY+
Sbjct: 119 CFSAIYFTGMVALTLSASVPGLKP--------AECIGSLCPPATMVQSTVLFSGLYLIAL 170
Query: 122 GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 181
G GI+PCVSSFGADQFD+ + FFN+FY ++ +GA V+ T++V+IQ +GW
Sbjct: 171 GTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWE 230
Query: 182 SAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGL 241
F + MG++ M FF GTPLYR + P GSP+T V QVLVAA+RK +
Sbjct: 231 LGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSN----------- 279
Query: 242 YEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLV 301
+VP + E N +PWKLCTVTQVEEVK L+RLV
Sbjct: 280 LKVPEDST------------------------DEGDANTNPWKLCTVTQVEEVKILLRLV 315
Query: 302 PIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTF 361
PI A I+ +V+ ++ TL VQQ M +G ++P + +F S+ + + +Y
Sbjct: 316 PIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGLFEIPPATLGMFDTASVLISVPIYDRVI 375
Query: 362 VPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 421
VPL RR TG +G ++LQR+GIGL VS+LS+ +A I E R A + +
Sbjct: 376 VPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVETVRLQLA--RDLDLVESGDIVP 433
Query: 422 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 481
L+ +W + QY L+G A VF VG +EF YE++PD+M+S+ SA+A L LG + +S++ +
Sbjct: 434 LNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIIT 493
Query: 482 IIKSVTGNPKKGQPNWL-AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534
++ ++ G+ W+ + NIN G DY +WLL L +N F++ + +Y +
Sbjct: 494 LVAYLS-----GKDCWIPSDNINNGHLDYFFWLLVSLGSVNIPVFVFFSVKYTH 542
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 198/546 (36%), Positives = 304/546 (55%), Gaps = 16/546 (2%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
+ E++A G NM++++ +H ++N + NF G S + +LG F+AD++ GR+WT
Sbjct: 38 ICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWT 97
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
I + IY G+T +T+ A + P + + C A + Q+ LY L +
Sbjct: 98 ITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV------CVVADTAQLSILYVALLLGA 151
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
G+ GIRPCV +FGADQFDE + T +FN++Y + ++A T++V+IQ GW
Sbjct: 152 LGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGW 211
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
G G +AM +S + F G LYRH +P GSP TR+ QV VAAFRKR S +
Sbjct: 212 GLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSL- 270
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN----PSPWKLCTVTQVEEVKT 296
LY + I GK+ HT LDKAA+ +ED + P+ W+L TV +VEE+K+
Sbjct: 271 LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKS 330
Query: 297 LVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGLSIFLILS 355
++R+ PI A I+L + T S+QQA TMN H+ ++P M VF +++ +
Sbjct: 331 VIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTII 390
Query: 356 LYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSF 415
Y FV + R+ TG RG + L R+GIG +SI++ + AG E R++ AI HG
Sbjct: 391 FYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKP 450
Query: 416 LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFA 475
T +P +S WL+ QY L G+AE F +G LEF Y++AP++M+S +A +A +G +
Sbjct: 451 HTIVP-ISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYV 509
Query: 476 ASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534
+++L +++ + P NWL N+N GR +Y YWL+ VL +N +L+ A Y Y
Sbjct: 510 STLLVTLVHKFSAKPDGS--NWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTY 567
Query: 535 RSEQKH 540
+ Q H
Sbjct: 568 KPVQVH 573
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 200/549 (36%), Positives = 309/549 (56%), Gaps = 14/549 (2%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ERMAY+G+S N+ +M +H+ SSN V N++G S + +LG ++ DA LGRY T
Sbjct: 44 ERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFV 103
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
I IY +G+ +TL T+ P + + + +CE A Q+ + LY G
Sbjct: 104 ISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIG 159
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
G +P +S+ GADQFD KT FFN++ S+ G + A T++VY+Q GW
Sbjct: 160 TGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTL 219
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
+G + + IS +F +GTP YRH+LP GSP T++A+V+VA+FRK +A + ++ +
Sbjct: 220 GYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFH 278
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP 302
E+P KG+ I T R LD+A+L+ + W LCT T+VEE K ++R++P
Sbjct: 279 ELPSLEYERKGAFPIHPTPSLRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLP 334
Query: 303 IPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGLSIFLILSLYYSTF 361
+ T + +++L + TL V+Q T++ + G +P + F LS+ + + LY F
Sbjct: 335 VLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVF 394
Query: 362 VPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 421
V + R+ TG+PRG + LQR+GIGL IL +I A + ERYR A HG +P
Sbjct: 395 VKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLP- 453
Query: 422 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 481
L+ + LL Q+ L+G+A+ F V LEF Y++AP++MKS+G++Y+ + +G F +S L S
Sbjct: 454 LTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLS 513
Query: 482 IIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHG 541
+ +T KK W+ N+N R DY Y AVL+++NF FL Y YR+E
Sbjct: 514 TVSEIT---KKRGRGWILNNLNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDS 570
Query: 542 NDYEVMENK 550
D + +E K
Sbjct: 571 VDVKEVEMK 579
|
Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 339 bits (870), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 197/554 (35%), Positives = 314/554 (56%), Gaps = 16/554 (2%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ERMAY+G+S N+V +M +H+ SSN V N++G S + +LG ++ADA+ GRY T
Sbjct: 44 ERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFV 103
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
I + IYL G+ +TL ++ P + + + +CE A Q+ + LY G
Sbjct: 104 ISSAIYLLGMALLTLSVSLPGLKPPKCSTANVE----NCEKASVIQLAVFFGALYTLAIG 159
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
G +P +S+ GADQFDE K H FFN++ S+ G A T++VY+Q GW
Sbjct: 160 TGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAI 219
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
+G + + S +F +GT LYRH+LP GSP T++A+V+VA+ RK SS Y
Sbjct: 220 GYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDS-TRFY 278
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP 302
E+P A K + I T R L++A+L+ + W+LCT+T+VEE K +++++P
Sbjct: 279 ELPPMEYASKRAFPIHSTSSLRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLP 334
Query: 303 IPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGLSIFLILSLYYSTF 361
+ T + +++L + +TL ++Q T++ + +P + F S+ + + +Y F
Sbjct: 335 VLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVF 394
Query: 362 VPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP- 420
V R++TG+PRG + LQR+GIG+ + IL +I A I ERYR A HG + TA+P
Sbjct: 395 VKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASITERYRLKVAAEHG--LTHQTAVPI 452
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
LS + LL QY L+G+A+ F + LEF Y++AP++MKS+G++Y + + +G F +SIL
Sbjct: 453 PLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILL 512
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 540
S + +T +G W+ N+N R D Y AVL+++NF FL Y+YR++
Sbjct: 513 SSVSQITKKQGRG---WIQNNLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQ 569
Query: 541 GNDYEVMENKLYDS 554
+ E E + D+
Sbjct: 570 SANVEQKEPNMVDN 583
|
Peptide transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 190/553 (34%), Positives = 304/553 (54%), Gaps = 35/553 (6%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
+AER A++GL+ N++TF+ + +S A ++ +N ++G+S +LG FLAD+ LGR+ T
Sbjct: 27 IAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVSCMFPILGAFLADSILGRFKT 86
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
+ + + IYL G+ + L T+ A+ + + LY+
Sbjct: 87 VLLTSFIYLLGIVMLPLSVTV---------------------VARRMREKVFFMALYVMA 125
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
G G +PCV +F ADQF E + + K FFN++Y+++ + + +A +++IQ W
Sbjct: 126 VGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAVLALIFIQERVSW 185
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
F +A ++ I+ ++F IG P YR ++P GSP TRVAQV+VAA +K + S+ G
Sbjct: 186 SLGFSIIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKKWRLS-STRHHYG 244
Query: 241 L-YEVPGKHSAIKGSGK----IAHTDDFRCLDKAAL--ELKEDVINPSPWKLCTVTQVEE 293
L YE +H + +A T+ FR LDKA + E+ + N +PW+LCTV QVEE
Sbjct: 245 LCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNK-NRNPWRLCTVNQVEE 303
Query: 294 VKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFL 352
VK ++RL+PI IM LT+ T ++Q M+ +G +P G++I +
Sbjct: 304 VKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILI 363
Query: 353 ILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE 412
++ LY FVP+ R+IT H G + LQR+G+GL V+ +++ G+ E R A HG
Sbjct: 364 LIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLKVARDHGLI 423
Query: 413 FSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLG 472
S +P +S+ WLL QY L+GI +VF IVG+ E Y++ P+ M+SIG+A G+G
Sbjct: 424 DSPKEVVP-MSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVVGVG 482
Query: 473 CFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 532
F ++ II +V K WL N+N DY YW++A L+ ++ C +L+ A +
Sbjct: 483 SFVST---GIISTVQTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAVSLCFYLFIANHF 539
Query: 533 KYRSEQKHGNDYE 545
Y+ Q +D E
Sbjct: 540 LYKKLQDKDDDVE 552
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 556 | ||||||
| 224053581 | 638 | predicted protein [Populus trichocarpa] | 0.987 | 0.860 | 0.865 | 0.0 | |
| 225425292 | 640 | PREDICTED: probable peptide/nitrate tran | 0.989 | 0.859 | 0.838 | 0.0 | |
| 147866216 | 626 | hypothetical protein VITISV_008303 [Viti | 0.980 | 0.870 | 0.844 | 0.0 | |
| 449468910 | 637 | PREDICTED: probable peptide/nitrate tran | 0.991 | 0.864 | 0.828 | 0.0 | |
| 356569101 | 631 | PREDICTED: probable peptide/nitrate tran | 0.983 | 0.866 | 0.837 | 0.0 | |
| 357501519 | 638 | Peptide transporter-like protein [Medica | 0.974 | 0.849 | 0.812 | 0.0 | |
| 147771745 | 612 | hypothetical protein VITISV_040927 [Viti | 0.949 | 0.862 | 0.834 | 0.0 | |
| 297811451 | 625 | proton-dependent oligopeptide transport | 0.973 | 0.865 | 0.808 | 0.0 | |
| 15240621 | 624 | putative peptide/nitrate transporter [Ar | 0.973 | 0.866 | 0.806 | 0.0 | |
| 296085541 | 606 | unnamed protein product [Vitis vinifera] | 0.928 | 0.851 | 0.787 | 0.0 |
| >gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/550 (86%), Positives = 512/550 (93%), Gaps = 1/550 (0%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFY+MH+ F SSNAVNNFLGISQ SSVLGGFLADAYLGRYWT
Sbjct: 83 MAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLGISQVSSVLGGFLADAYLGRYWT 142
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTTIYLAGLTGITLCATM +FMP+Q CD++S LLG+CEPAKSWQMLYL TVLY+TG
Sbjct: 143 IAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLLGNCEPAKSWQMLYLNTVLYVTG 202
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYLSVT+GAIVAFTLVVYIQM+HGW
Sbjct: 203 FGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYLSVTIGAIVAFTLVVYIQMKHGW 262
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
GSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAF+KR A+FSSSELIG
Sbjct: 263 GSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFQKRKASFSSSELIG 322
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
LYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED ++PSPW+LCTVTQVEEVK L++L
Sbjct: 323 LYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGVDPSPWRLCTVTQVEEVKILIKL 382
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST 360
VPIPACTIMLN+ILTE+LTLSVQQAYT+NTH+G LKLPVT MPVFP LSIFLILSLYYS
Sbjct: 383 VPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLPVTSMPVFPCLSIFLILSLYYSV 442
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVP+ RRITGHPRGASQLQRVGIGLA SILSV WA IFERYRR YAI HGYEFSFLT MP
Sbjct: 443 FVPIFRRITGHPRGASQLQRVGIGLAFSILSVAWAAIFERYRRKYAIEHGYEFSFLTPMP 502
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
+LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGG+GCFAASILN
Sbjct: 503 NLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGIGCFAASILN 562
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 540
SI+KSVTGNP K Q +WL+QNINTGRF+Y YWLL VLS INFCAFLYSA RYKYR+EQK
Sbjct: 563 SIVKSVTGNPDKRQQSWLSQNINTGRFEYFYWLLTVLSAINFCAFLYSARRYKYRAEQKF 622
Query: 541 GNDYEVMENK 550
G EV+ NK
Sbjct: 623 GIQ-EVVTNK 631
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 973 bits (2514), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/550 (83%), Positives = 504/550 (91%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 83 MAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLGISQASSVLGGFLADAYLGRYWT 142
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TG
Sbjct: 143 IAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTG 202
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GW
Sbjct: 203 FGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGW 262
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
GSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +G
Sbjct: 263 GSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVG 322
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
LYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED PSPW+LCTVTQVEEVK LV+L
Sbjct: 323 LYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGAAPSPWRLCTVTQVEEVKILVKL 382
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST 360
+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS
Sbjct: 383 LPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSI 442
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVP+ RRITGHP GASQLQRVGIGLAVSILSV WAG+FERYRRNYAI GYEF+FLT MP
Sbjct: 443 FVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVFERYRRNYAIKQGYEFTFLTPMP 502
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILN
Sbjct: 503 HLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILN 562
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 540
SIIKS+TG+ ++ P+WL+QNINTGRFDYLYWLL V SVINFC FLYSA RYKYR Q+
Sbjct: 563 SIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEG 622
Query: 541 GNDYEVMENK 550
+ E + K
Sbjct: 623 TMEEEAVSKK 632
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/545 (84%), Positives = 502/545 (92%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 76 MAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLGISQASSVLGGFLADAYLGRYWT 135
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TG
Sbjct: 136 IAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTG 195
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GW
Sbjct: 196 FGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGW 255
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
GSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +G
Sbjct: 256 GSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVG 315
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
LYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED PSPW+LCTVTQVEEVK LV+L
Sbjct: 316 LYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGAAPSPWRLCTVTQVEEVKILVKL 375
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST 360
+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS
Sbjct: 376 LPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSI 435
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVP+ RRITGHP GASQLQRVGIGLAVSILSV WAG+FERYRRNYAI GYEF+FLT MP
Sbjct: 436 FVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVFERYRRNYAIKQGYEFTFLTPMP 495
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILN
Sbjct: 496 HLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILN 555
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 540
SIIKS+TG+ ++ P+WL+QNINTGRFDYLYWLL V SVINFC FLYSA RYKYR Q+
Sbjct: 556 SIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEG 615
Query: 541 GNDYE 545
+ E
Sbjct: 616 TMEEE 620
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/553 (82%), Positives = 506/553 (91%), Gaps = 2/553 (0%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH F SS+AVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 85 MAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNFLGISQASSVLGGFLADAYLGRYWT 144
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTTIYL GL GITLCAT+ F+PNQ CD++S LLG CEPAK WQM YLYTVLY+TG
Sbjct: 145 IAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSLLLGRCEPAKPWQMTYLYTVLYLTG 204
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFFYLSVTVGAI+AFT VVYIQ++HGW
Sbjct: 205 FGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFFYLSVTVGAIIAFTAVVYIQIKHGW 264
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
G+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLTRVAQVLVAA+RKR+A+FS+SE +G
Sbjct: 265 GAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLTRVAQVLVAAYRKRNASFSNSEFVG 324
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
L+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED NPSPWKLCTVTQVEEVK L++L
Sbjct: 325 LFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKEDGGNPSPWKLCTVTQVEEVKILLKL 384
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST 360
+PIPACTIMLN++LTE+LTLSVQQAYTMNTH+G+LKLPVTCMPVFPGLSIFLILSLYYS
Sbjct: 385 IPIPACTIMLNLVLTEYLTLSVQQAYTMNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSV 444
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVPL RRITGHP GASQLQRVGIGLA+SILSV WAG FERYRRN+AI GYE SFL+ MP
Sbjct: 445 FVPLSRRITGHPHGASQLQRVGIGLAISILSVAWAGAFERYRRNFAIRSGYEASFLSPMP 504
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
+LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS+LN
Sbjct: 505 NLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASLLN 564
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 540
SIIKSVTG+P P+WL+QNINTGRFDY YWLL V+S+INFC FLYSA++YKYR + +
Sbjct: 565 SIIKSVTGSPNGRNPSWLSQNINTGRFDYFYWLLTVMSIINFCIFLYSAHKYKYRKDHEV 624
Query: 541 GNDYEVMENKLYD 553
G +MEN ++D
Sbjct: 625 GEG--IMENGMHD 635
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/547 (83%), Positives = 497/547 (90%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 79 MAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTTIYLAGLTGITLCAT+ F+PNQ+ CD+ S LLG+CE AK WQM YLYT LYIT
Sbjct: 139 IAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCEAAKPWQMTYLYTALYITA 198
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+GAIVAFT+VVY+QM+ GW
Sbjct: 199 FGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTIGAIVAFTVVVYVQMKFGW 258
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
GSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR+A+F SSE IG
Sbjct: 259 GSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNASFGSSEFIG 318
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
LYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED NPSPW+LCTVTQVEEVK L++L
Sbjct: 319 LYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSPWRLCTVTQVEEVKILMKL 378
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST 360
+PIPACTIMLNV+LTEFLTLSVQQAYT+NTH+G+LKLPVTCMPVFPGLS+FLILSLYYS
Sbjct: 379 IPIPACTIMLNVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCMPVFPGLSVFLILSLYYSI 438
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA IFERYRRNYAI HGY SFLTAMP
Sbjct: 439 FVPVFRRITGHPHGASQLQRVGIGLAVSILSVAWAAIFERYRRNYAIKHGYLASFLTAMP 498
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
+LSAYWLLIQYCLIG+AEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCF A+I+N
Sbjct: 499 NLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFVATIIN 558
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 540
+IIKS TGN KGQP+WL+QNINTGRFDY YWLL LS+INF F+YSA+RYKYR Q H
Sbjct: 559 NIIKSATGNLDKGQPSWLSQNINTGRFDYFYWLLTALSIINFAIFVYSAHRYKYREHQVH 618
Query: 541 GNDYEVM 547
+ M
Sbjct: 619 EMEKHEM 625
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/549 (81%), Positives = 497/549 (90%), Gaps = 7/549 (1%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 78 MAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 137
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+CEPAK WQM YLYTVLYIT
Sbjct: 138 IAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNCEPAKPWQMTYLYTVLYITA 197
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT+GAI+AFT VVY+QM+ GW
Sbjct: 198 FGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVTIGAIIAFTAVVYVQMKLGW 257
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
GSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAA+RKR +F +SE++G
Sbjct: 258 GSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAYRKRKESFGNSEVVG 317
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
LYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D NPS W LCTVTQVEEVK L++L
Sbjct: 318 LYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPSQWNLCTVTQVEEVKILIKL 377
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST 360
+PIPACTIMLNVILTEFLTLSVQQAYT+NTH+GKLKLPVTCMPVFPGLS+FLIL+LYY T
Sbjct: 378 IPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTCMPVFPGLSVFLILALYYQT 437
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVPL +RITGHP GASQLQR+GIGL VSILSV WA IFE+YRRNYAI + +E SFLT MP
Sbjct: 438 FVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKYRRNYAIKNEFEASFLTPMP 497
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
+LSAYWLLIQYCLIG+AEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCF A+ +N
Sbjct: 498 NLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFFATFIN 557
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ-- 538
S++KS TGN K Q +WL+QNINTG+FDY YW+L LS++NFC FLYSA+RYKYR++
Sbjct: 558 SVVKSATGNSDKRQESWLSQNINTGKFDYFYWVLTALSLVNFCIFLYSAHRYKYRTQHVY 617
Query: 539 -----KHGN 542
KH N
Sbjct: 618 EMESIKHDN 626
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/538 (83%), Positives = 490/538 (91%), Gaps = 10/538 (1%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 83 MAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLGISQASSVLGGFLADAYLGRYWT 142
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TG
Sbjct: 143 IAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTG 202
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GW
Sbjct: 203 FGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGW 262
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
GSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +G
Sbjct: 263 GSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVG 322
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
LYE+PGK SAIKGS KI HTDDFR +D PSPW+LCTVTQVEEVK LV+L
Sbjct: 323 LYELPGKQSAIKGSRKIVHTDDFR----------KDGAAPSPWRLCTVTQVEEVKILVKL 372
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST 360
+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS
Sbjct: 373 LPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSI 432
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVP+ RRITGHP GASQLQRVGIGLAVSILSV WAG+FERYRRNYAI GYEF+FLT MP
Sbjct: 433 FVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVFERYRRNYAIKQGYEFTFLTPMP 492
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILN
Sbjct: 493 HLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILN 552
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 538
SIIKS+TG+ ++ P+WL+QNINTGRFDYLYWLL V SVINFC FLYSA RYKYR+ Q
Sbjct: 553 SIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRAFQ 610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/544 (80%), Positives = 490/544 (90%), Gaps = 3/544 (0%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 79 MAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138
Query: 61 IAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYIT 119
IAIFTT+YL L GITL A++K+F+P+Q NC ++S LLG+CEPAKSWQMLYLYTVLYIT
Sbjct: 139 IAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNCEPAKSWQMLYLYTVLYIT 198
Query: 120 GFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 179
GFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME G
Sbjct: 199 GFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELG 258
Query: 180 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELI 239
WG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE I
Sbjct: 259 WGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFI 318
Query: 240 GLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR 299
GLYEVPG SAI GS KI H+DDF LDKAAL+LKED + PSPWKLCTVTQVEEVK L+R
Sbjct: 319 GLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPSPWKLCTVTQVEEVKILIR 378
Query: 300 LVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYS 359
L+PIPACTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTCMPVFPGLSIFLILSLYYS
Sbjct: 379 LIPIPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYS 438
Query: 360 TFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 419
FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WAG+FE YRR+YAI HG+EF+FLT M
Sbjct: 439 VFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYRRHYAIQHGFEFNFLTQM 498
Query: 420 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASIL 479
PDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA+IL
Sbjct: 499 PDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATIL 558
Query: 480 NSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQK 539
N+I+K+ T + +WL+QNINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+ +
Sbjct: 559 NNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRAIES 616
Query: 540 HGND 543
+
Sbjct: 617 EEDK 620
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/543 (80%), Positives = 489/543 (90%), Gaps = 2/543 (0%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 79 MAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITG
Sbjct: 139 IAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITG 198
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GW
Sbjct: 199 FGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGW 258
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
G AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IG
Sbjct: 259 GMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIG 318
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
LYEVPG SAI GS KI H++DF LDKAALELKED + PSPWKLCTVTQVEEVK L+RL
Sbjct: 319 LYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRL 378
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST 360
+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTCMPVFPGLSIFLILSLYYS
Sbjct: 379 IPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSV 438
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WAG+FE YRR+YAI +G+EF+FLT MP
Sbjct: 439 FVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMP 498
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
DL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA+ILN
Sbjct: 499 DLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILN 558
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 540
+I+K+ T + +WL+QNINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+ +
Sbjct: 559 NIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRAIESE 616
Query: 541 GND 543
+
Sbjct: 617 EDK 619
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/550 (78%), Positives = 474/550 (86%), Gaps = 34/550 (6%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 83 MAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLGISQASSVLGGFLADAYLGRYWT 142
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LLGSCEPAK WQM YLYTVLY+TG
Sbjct: 143 IAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLLGSCEPAKPWQMFYLYTVLYVTG 202
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYLSVT+GAIVAFT VVYIQ++ GW
Sbjct: 203 FGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYLSVTIGAIVAFTAVVYIQIKRGW 262
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
GSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR+ +FSS E +G
Sbjct: 263 GSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNVSFSSGEYVG 322
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
LYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED PSPW+LCTVTQVEEVK LV+L
Sbjct: 323 LYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGAAPSPWRLCTVTQVEEVKILVKL 382
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST 360
+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLPVTCMPVFPGLSIFLILSLYYS
Sbjct: 383 LPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLPVTCMPVFPGLSIFLILSLYYSI 442
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVP+ RRITGHP GASQLQRVGIGLAVSILSV WAG
Sbjct: 443 FVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAG------------------------ 478
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 480
YCLIGIAEVFCIVGLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILN
Sbjct: 479 ----------YCLIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILN 528
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 540
SIIKS+TG+ ++ P+WL+QNINTGRFDYLYWLL V SVINFC FLYSA RYKYR Q+
Sbjct: 529 SIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEG 588
Query: 541 GNDYEVMENK 550
+ E + K
Sbjct: 589 TMEEEAVSKK 598
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 556 | ||||||
| TAIR|locus:2181655 | 624 | AT5G13400 [Arabidopsis thalian | 0.960 | 0.855 | 0.766 | 2.5e-223 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.933 | 0.910 | 0.404 | 1e-107 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.940 | 0.917 | 0.402 | 3.7e-103 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.937 | 0.890 | 0.388 | 4.4e-100 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.901 | 0.849 | 0.399 | 8.4e-97 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.953 | 0.889 | 0.358 | 2.3e-87 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.392 | 0.4 | 0.418 | 3.9e-87 | |
| TAIR|locus:2161428 | 586 | AT5G46040 [Arabidopsis thalian | 0.967 | 0.918 | 0.346 | 4.7e-87 | |
| TAIR|locus:2161438 | 582 | PTR3 "peptide transporter 3" [ | 0.962 | 0.919 | 0.349 | 8.9e-86 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.942 | 0.908 | 0.360 | 1.5e-83 |
| TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2156 (764.0 bits), Expect = 2.5e-223, P = 2.5e-223
Identities = 411/536 (76%), Positives = 460/536 (85%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
MAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQASSVLGGFLADAYLGRYWT
Sbjct: 79 MAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
IAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE AKSWQMLYLYTVLYITG
Sbjct: 139 IAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCEEAKSWQMLYLYTVLYITG 198
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
FGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+GAI+AFTLVVY+QME GW
Sbjct: 199 FGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTLGAIIAFTLVVYVQMELGW 258
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
G AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVLVAAFRKR+AAF+SSE IG
Sbjct: 259 GMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVLVAAFRKRNAAFTSSEFIG 318
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 300
LYEVPG SAI GS KI H++DF LDKAALELKED + PSPWKLCTVTQVEEVK L+RL
Sbjct: 319 LYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSPWKLCTVTQVEEVKILIRL 378
Query: 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXT 360
+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTCMPVFPG
Sbjct: 379 IPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCMPVFPGLSIFLILSLYYSV 438
Query: 361 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420
FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WAG+FE YRR+YAI +G+EF+FLT MP
Sbjct: 439 FVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYRRHYAIQNGFEFNFLTQMP 498
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILN 480
DL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI ILN
Sbjct: 499 DLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAATILN 558
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 536
+I+K+ T + G+ +WL+QNINTGRFD LYWLL +LS +NFC FL+SA+RYKYR+
Sbjct: 559 NIVKAATRD-SDGK-SWLSQNINTGRFDCLYWLLTLLSFLNFCVFLWSAHRYKYRA 612
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 217/537 (40%), Positives = 320/537 (59%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ER+AY+G+ N+V ++ +++ A ++N V N+ G + ++G F+ADAYLGRYWTIA
Sbjct: 41 ERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIA 100
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
F IY++G+T +TL A++ P N D +C P S Q + LY+ G
Sbjct: 101 TFVFIYVSGMTLLTLSASVPGLKPGNCNAD-------TCHPNSS-QTAVFFVALYMIALG 152
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
GI+PCVSSFGADQFDE ++ K FFN+FY S+ VGA++A T++V+IQM GWG
Sbjct: 153 TGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGW 212
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
FG +AM I+ FF G+ YR + PGGSPLTR+ QV+VAAFRK + + L+
Sbjct: 213 GFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LF 271
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINP---SPWKLCTVTQVEEVKTLVR 299
E S IKGS K+ HTD+ + DKAA+E + D I +PW+LC+VTQVEE+K+++
Sbjct: 272 ETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIIT 331
Query: 300 LVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGXXXXXXXXXXX 358
L+P+ A I+ + ++ T+ V Q TM+ HMGK ++P + +F
Sbjct: 332 LLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYD 391
Query: 359 XTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418
+PL R+ T + RG +QLQR+GIGL VSI ++I AG+ E R +Y +H ++
Sbjct: 392 QFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHN---AYDQK 448
Query: 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXI 478
+S +W + QY LIG AEVF +G LEF Y++APDAM+S+ +
Sbjct: 449 QIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTV 508
Query: 479 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 535
L +++ +T K G+P W+ N+N G DY ++LLA LS +NF +L+ + RYKY+
Sbjct: 509 LVTVVMKIT--KKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYK 563
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
Identities = 218/542 (40%), Positives = 314/542 (57%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ER+AY+G+S N++ ++ M+ +S +V+N+ G A+ ++G F+ADAYLGRYWTIA
Sbjct: 42 ERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIA 101
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
F IY+AG+T +T+ A++ P C +C A + Q + LY+ G
Sbjct: 102 SFVVIYIAGMTLLTISASVPGLTPT---CSG-----ETCH-ATAGQTAITFIALYLIALG 152
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
GI+PCVSSFGADQFD+ + K FFN+FY + VGA++A +++V+IQM GWG
Sbjct: 153 TGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGW 212
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
G +AM I+ + FF G+ YR + PGGSPLTR+ QV+VA+ RK E + LY
Sbjct: 213 GLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LY 271
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWKLCTVTQVEEVKTLVR 299
E S+I GS K+ HT DKAA+E + D S WKLCTVTQVEE+K L+R
Sbjct: 272 ENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIR 331
Query: 300 LVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG-KLKLPVTCMPVFPGXXXXXXXXXXX 358
L+PI A I+ + ++ T+ V Q T++ HMG K+P + +F
Sbjct: 332 LLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYD 391
Query: 359 XTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418
VP R+ TGH RG +QLQR+GIGL +SI S++ AGI E R NY +H ++ T
Sbjct: 392 KLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNL-YNEET- 449
Query: 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXI 478
+P ++ +W + QY L+G AEVF +G LEF Y++APDAM+S+
Sbjct: 450 IP-MTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTF 508
Query: 479 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 538
L +++ VT + G+P W+A+N+N G DY +WLLA LS +NF +L+ A Y Y+
Sbjct: 509 LVTLVTKVTRSG--GRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTT 566
Query: 539 KH 540
H
Sbjct: 567 GH 568
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
Identities = 208/536 (38%), Positives = 309/536 (57%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ER+AY+G++ N++T++ +H+ ++ V + G + ++G LADAY GRYWTIA
Sbjct: 58 ERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIA 117
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
F+ IY G++ +TL A++ P + C I S PA Q + LY+ G
Sbjct: 118 CFSGIYFIGMSALTLSASVPALKPAE--C--IGDFCPSATPA---QYAMFFGGLYLIALG 170
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
GI+PCVSSFGADQFD+ + FFN+FY S+ +GA+V+ +L+V+IQ GWG
Sbjct: 171 TGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGL 230
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
FG + MG++ FF GTPLYR + PGGSP+TR++QV+VA+FRK + LY
Sbjct: 231 GFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATL-LY 289
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN---PSPWKLCTVTQVEEVKTLVR 299
E K+SAI GS KI HTDD + LDKAA+ +E+ + + W+LCTVTQVEE+K L+R
Sbjct: 290 ETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIR 349
Query: 300 LVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXX 359
+ PI A I+ + + + T+ VQQ MN +G +LP + F
Sbjct: 350 MFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDR 409
Query: 360 TFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 419
VPL R+ TG +G +++QR+GIGL VS+L + A I E R + A G S +
Sbjct: 410 FIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESG-APV 468
Query: 420 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXIL 479
P +S W + QY ++G AEVF +G LEF Y+++PDAM+S+ ++
Sbjct: 469 P-ISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLI 527
Query: 480 NSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 535
+++ T + GQ W++ N+N+G DY +WLLA LS++N + +SA RYK +
Sbjct: 528 LTLVTYFT--TRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 209/523 (39%), Positives = 301/523 (57%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ER+AY+G++ N++T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA
Sbjct: 69 ERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIA 128
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
F+ IY G+ +TL A++ V P C ++ L C PA + Q +T LY+ G
Sbjct: 129 SFSAIYFIGMALLTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALG 184
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
GI+PCVSSFGADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG
Sbjct: 185 TGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGL 244
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
F + MG+S FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LY
Sbjct: 245 GFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLY 303
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLV 298
E K+S I GS KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+
Sbjct: 304 ETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLI 362
Query: 299 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXX 358
R+ PI A I+ +V+ ++ TL VQQ +MN + ++P VF
Sbjct: 363 RMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYD 422
Query: 359 XTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418
VP RR TG P+G + LQR+GIGL +S+LS+ A I E R A +F A
Sbjct: 423 RFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLA----QDF---VA 475
Query: 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXI 478
M S +W + QY L+GIAEVF +G +EF Y+E+PDAM+S+ +
Sbjct: 476 M---SIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSL 532
Query: 479 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 521
+ +++ T G+ W+ ++N G DY +WLL L ++N
Sbjct: 533 ILTLVAYFTA--LGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 196/546 (35%), Positives = 291/546 (53%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
+ E++A G NM++++ +H ++N + NF G S + +LG F+AD++ GR+WT
Sbjct: 38 ICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSFAGRFWT 97
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
I + IY G+T +T+ A + P + + C A + Q+ LY L +
Sbjct: 98 ITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV------CVVADTAQLSILYVALLLGA 151
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
G+ GIRPCV +FGADQFDE + T +FN++Y + ++A T++V+IQ GW
Sbjct: 152 LGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGW 211
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
G G +AM +S + F G LYRH +P GSP TR+ QV VAAFRKR S +
Sbjct: 212 GLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSL- 270
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS--P--WKLCTVTQVEEVKT 296
LY + I GK+ HT LDKAA+ +ED + P P W+L TV +VEE+K+
Sbjct: 271 LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKS 330
Query: 297 LVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXX 355
++R+ PI A I+L + T S+QQA TMN H+ ++P M VF
Sbjct: 331 VIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTII 390
Query: 356 XXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSF 415
FV + R+ TG RG + L R+GIG +SI++ + AG E R++ AI HG
Sbjct: 391 FYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKP 450
Query: 416 LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXX 475
T +P +S WL+ QY L G+AE F +G LEF Y++AP++M+S
Sbjct: 451 HTIVP-ISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYV 509
Query: 476 XXILNSIIKSVTGNPKKGQPNWLAQN-INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534
+L +++ + P G NWL N +N GR +Y YWL+ VL +N +L+ A Y Y
Sbjct: 510 STLLVTLVHKFSAKPD-GS-NWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTY 567
Query: 535 RSEQKH 540
+ Q H
Sbjct: 568 KPVQVH 573
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
Identities = 95/227 (41%), Positives = 140/227 (61%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ER+AY+G++ N++T+ +H++ ++ V + G + ++G +ADAY GRYWTIA
Sbjct: 59 ERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIA 118
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS-CEPAKSWQMLYLYTVLYITGF 121
F+ IY G+ +TL A++ P + C +GS C PA Q L++ LY+
Sbjct: 119 CFSAIYFTGMVALTLSASVPGLKPAE--C------IGSLCPPATMVQSTVLFSGLYLIAL 170
Query: 122 GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 181
G GI+PCVSSFGADQFD+ + FFN+FY ++ +GA V+ T++V+IQ +GW
Sbjct: 171 GTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWE 230
Query: 182 SAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK 228
F + MG++ M FF GTPLYR + P GSP+T V QVLVAA+RK
Sbjct: 231 LGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAAYRK 277
|
|
| TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 192/554 (34%), Positives = 300/554 (54%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ERMAY+G+S N+V +M +H+ SSN V N++G S + +LG ++ADA+ GRY T
Sbjct: 44 ERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFV 103
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
I + IYL G+ +TL ++ P + C + + +CE A Q+ + LY G
Sbjct: 104 ISSAIYLLGMALLTLSVSLPGLKPPK--CSTAN--VENCEKASVIQLAVFFGALYTLAIG 159
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
G +P +S+ GADQFDE K H FFN++ S+ G A T++VY+Q GW
Sbjct: 160 TGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAI 219
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
+G + + S +F +GT LYRH+LP GSP T++A+V+VA+ RK SS Y
Sbjct: 220 GYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDST-RFY 278
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP 302
E+P A K + I T R L++A+L+ + W+LCT+T+VEE K +++++P
Sbjct: 279 ELPPMEYASKRAFPIHSTSSLRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLP 334
Query: 303 IPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXXXXXXTF 361
+ T + +++L + +TL ++Q T++ + +P + F F
Sbjct: 335 VLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVF 394
Query: 362 VPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP- 420
V R++TG+PRG + LQR+GIG+ + IL +I A I ERYR A HG + TA+P
Sbjct: 395 VKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASITERYRLKVAAEHG--LTHQTAVPI 452
Query: 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILN 480
LS + LL QY L+G+A+ F + LEF Y++AP++MKS+ IL
Sbjct: 453 PLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILL 512
Query: 481 SIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 540
S + +T K+G+ W+ N+N R D Y AVL+++NF FL Y+YR++
Sbjct: 513 SSVSQIT--KKQGR-GWIQNNLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQ 569
Query: 541 GNDYEVMENKLYDS 554
+ E E + D+
Sbjct: 570 SANVEQKEPNMVDN 583
|
|
| TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 192/549 (34%), Positives = 294/549 (53%)
Query: 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 62
ERMAY+G+S N+ +M +H+ SSN V N++G S + +LG ++ DA LGRY T
Sbjct: 44 ERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFV 103
Query: 63 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFG 122
I IY +G+ +TL T+ P + C + + +CE A Q+ + LY G
Sbjct: 104 ISCAIYFSGMMVLTLSVTIPGIKPPE--CSTTN--VENCEKASVLQLAVFFGALYTLAIG 159
Query: 123 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS 182
G +P +S+ GADQFD KT FFN++ S+ G + A T++VY+Q GW
Sbjct: 160 TGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTL 219
Query: 183 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242
+G + + IS +F +GTP YRH+LP GSP T++A+V+VA+FRK +A + ++ +
Sbjct: 220 GYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTH-DITSFH 278
Query: 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP 302
E+P KG+ I T R LD+A+L+ + W LCT T+VEE K ++R++P
Sbjct: 279 ELPSLEYERKGAFPIHPTPSLRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLP 334
Query: 303 IPACTIMLNVILTEFLTLSVQQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXXXXXXTF 361
+ T + +++L + TL V+Q T++ + G +P + F F
Sbjct: 335 VLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVF 394
Query: 362 VPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 421
V + R+ TG+PRG + LQR+GIGL IL +I A + ERYR A HG +P
Sbjct: 395 VKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLP- 453
Query: 422 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNS 481
L+ + LL Q+ L+G+A+ F V LEF Y++AP++MKS+ L S
Sbjct: 454 LTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLS 513
Query: 482 IIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHG 541
+ +T K+G+ W+ N+N R DY Y AVL+++NF FL Y YR+E
Sbjct: 514 TVSEIT--KKRGR-GWILNNLNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDS 570
Query: 542 NDYEVMENK 550
D + +E K
Sbjct: 571 VDVKEVEMK 579
|
|
| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 201/558 (36%), Positives = 298/558 (53%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
+ ER++ G++VN+VT++ MH + S+N V +F+G S +LGGFLAD++LGR+ T
Sbjct: 39 VVERLSTMGIAVNLVTYLMETMHLPSSTSANIVTDFMGTSFLLCLLGGFLADSFLGRFKT 98
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
I IF+TI G TG AT K+ C +C PA ++QM LY LY+
Sbjct: 99 IGIFSTIQALG-TGALAVAT-KLPELRPPTCHHGE----ACIPATAFQMTILYVSLYLIA 152
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
G G++ +S FG+DQFD++ K H+ FFN F+ +++G ++A T++VY+Q E G
Sbjct: 153 LGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFFNRFFFFISMGTLLAVTVLVYMQDEVGR 212
Query: 181 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240
A+G ++M I+ ++F GT YR++ GSP+ ++ QV+ AAFRKR S ++
Sbjct: 213 SWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGSPVVQIFQVIAAAFRKRKMELPQS-IVY 271
Query: 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED-------VINPSPWKLCTVTQVEE 293
LYE I+ I HTD F LDKAA+ + D V P+PWKL +VT+VEE
Sbjct: 272 LYE--DNPEGIR----IEHTDQFHLLDKAAIVAEGDFEQTLDGVAIPNPWKLSSVTKVEE 325
Query: 294 VKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXX 353
VK +VRL+PI A TI+ + +T SV+QA TM ++G K+P + VF
Sbjct: 326 VKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRNIGSFKIPAGSLTVFFVAAILIT 385
Query: 354 XXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEF 413
+P ++ G P G S LQR+ IGL +S + A + E+ R + A S +
Sbjct: 386 LAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLVLSTAGMAAAALVEQKRLSVAKSSSQK- 443
Query: 414 SFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXX 473
+P +S + L+ Q+ L+G E F G L+F ++P MK++
Sbjct: 444 ----TLP-ISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGF 498
Query: 474 XXXXILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF-----CAFLYS 528
L SI+K VT WLA NIN GR DY YWLL +LS INF CA +
Sbjct: 499 FVSSFLVSIVKRVTSTST--DVGWLADNINHGRLDYFYWLLVILSGINFVVYIICALWFK 556
Query: 529 AYRYKYRSEQKHGNDYEV 546
+ K E+++G + V
Sbjct: 557 PTKGKDSVEKENGKGFSV 574
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYR6 | PTR49_ARATH | No assigned EC number | 0.8066 | 0.9730 | 0.8669 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 556 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 1e-58 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-15 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 7e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-04 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 1e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.001 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 1e-58
Identities = 110/414 (26%), Positives = 180/414 (43%), Gaps = 46/414 (11%)
Query: 58 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 117
+ TI + + IY G +TL A P Q + Y LY
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40
Query: 118 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 177
+ G GI+P VS+FGADQFDE + D FF++FY S+ G+++A + Y+Q
Sbjct: 41 LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97
Query: 178 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 235
G+ FG A+ M ++ ++F +G+ Y+ + P GGSP T +A ++ AA + R
Sbjct: 98 VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157
Query: 236 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 295
LY K++ S HT A + + V ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LFDQQGSVWLLQ 207
Query: 296 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKL-KLPVTCMPVFPGLSIFLIL 354
++ ++PI A I+ + + T+ TL V+Q TM+ + L ++P F L++ ++L
Sbjct: 208 AILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILL 267
Query: 355 SLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFS 414
+ PL R RG + QR G+G+ + I++ A I E R YA + G
Sbjct: 268 PILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSP 323
Query: 415 FLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALA 468
T L W L + + G+ G LEF + P +M S+ + +A A
Sbjct: 324 GWTVP--LFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLLSAAA 371
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 4e-15
Identities = 37/205 (18%), Positives = 81/205 (39%), Gaps = 34/205 (16%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLADAYLG 56
+ ER +Y+G+ ++ +++Y + ++ + + + + ++GG+LAD LG
Sbjct: 31 LWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG 90
Query: 57 RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL 116
TI + + G + + + LY L
Sbjct: 91 TRRTIVLGAILMAIGHLVLAISSVSGPGG--------------------------LYIGL 124
Query: 117 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 176
+ G +P +SS + + + D F FY+ + +G+++A + + +
Sbjct: 125 ALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180
Query: 177 EHGWGSAFGALAIAMGISNMLFFIG 201
+GW FG A+ M I ++F +G
Sbjct: 181 NYGWHVGFGLAAVGMIIGLVIFLLG 205
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 7e-15
Identities = 58/230 (25%), Positives = 113/230 (49%), Gaps = 30/230 (13%)
Query: 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 66
Y+G+ +V ++ + + ++N + F + + ++G +AD++LG++ TI +
Sbjct: 3 YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62
Query: 67 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGI 126
+Y+ G +L A + P D L+G L + G GI
Sbjct: 63 VYVVGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGI 102
Query: 127 RPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHG 179
+PCVS+FG DQF+ER + RFF+FFY ++ G++ + + V +
Sbjct: 103 KPCVSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDC 159
Query: 180 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 229
+ AFG I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 160 FPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 35/204 (17%), Positives = 63/204 (30%), Gaps = 36/204 (17%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 60
+ LS + + S + + V+ F S+L G+L+D + GR
Sbjct: 9 FLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRV 66
Query: 61 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITG 120
+ + ++ G + A S +L + L G
Sbjct: 67 LLLGLLLFALGSLLLAF--------------------------ASSLWLLLVGRFL--LG 98
Query: 121 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180
G + P ++ A+ F + R F +GA++ L + GW
Sbjct: 99 LGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGW 152
Query: 181 GSAFGALAIAMGISNMLFFIGTPL 204
F LAI + +L L
Sbjct: 153 RWLFLILAILGLLLALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 39/212 (18%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADAYLGRY 58
+ ER +Y+G+ + ++ F+ + + + + +G + D G
Sbjct: 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK 79
Query: 59 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYI 118
T+ L GI L +LG A S +Y + Y
Sbjct: 80 KTMV---------LGGIVL-------------------MLGHFMLAMS---IYPDLIFYG 108
Query: 119 TGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 175
G G+ + SS ++ + D F FY+S+ +G+ ++ L I
Sbjct: 109 LGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165
Query: 176 MEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 207
+G+ F A+ M I + FF G + R
Sbjct: 166 ENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)
Query: 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 64
+ L + ++ + S + + F + L G L+D + GR + I
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 65 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 124
++ GL + + S +L + VL G G
Sbjct: 69 LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100
Query: 125 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 184
+ P ++ AD F R +GA + L + GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 185 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 227
LAI ++ +L + P P LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 556 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.98 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.95 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.95 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.94 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.93 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.93 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.92 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.92 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.92 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.92 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.92 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.92 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.91 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.91 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.91 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.91 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.91 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.91 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.9 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.9 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.9 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.9 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.89 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.89 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.89 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.89 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.89 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.88 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.88 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.88 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.88 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.88 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.88 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.88 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.87 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.86 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.86 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.86 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.86 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.86 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.86 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.85 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.85 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.84 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.84 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.84 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.83 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.83 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.82 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.82 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.82 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.8 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.8 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.76 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.75 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.75 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.73 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.73 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.73 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.72 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.72 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.72 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.71 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.71 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.69 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.68 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.68 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.68 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.67 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.66 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.62 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.62 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.62 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.58 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.52 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.47 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.46 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.4 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.34 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.33 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.31 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.3 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.3 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.28 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.27 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.27 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.25 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.24 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.24 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.24 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.23 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.22 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.22 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.22 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.22 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.21 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.21 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.21 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.21 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.2 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.2 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.19 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.18 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.15 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.15 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.14 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.14 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.13 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.13 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.13 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.12 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.09 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.07 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.06 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.04 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.03 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.02 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.01 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.01 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.95 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.92 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.92 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.91 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.89 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.88 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.88 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.88 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.87 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.87 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.85 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.84 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.84 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.82 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.81 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.81 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.8 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.79 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.78 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.77 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.76 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.75 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.75 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.74 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.72 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.71 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.71 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.7 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.69 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.68 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.65 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.64 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.61 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.61 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.6 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.59 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.59 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.58 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.57 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.56 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.53 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.52 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.49 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.44 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.43 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.41 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.4 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.4 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.36 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.35 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.31 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.3 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.29 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.28 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.26 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.26 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.23 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.19 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.18 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.17 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.16 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.14 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.14 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.1 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.03 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.01 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.93 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.89 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.89 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.87 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.84 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.83 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.82 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.74 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.72 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.71 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.71 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.69 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.67 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.59 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.46 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.26 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.25 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.2 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.18 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.0 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.96 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.94 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.78 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.08 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.91 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 95.83 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.82 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 95.64 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 95.31 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.96 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 94.83 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.59 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.56 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.49 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 93.98 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 93.79 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 92.96 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 92.74 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.47 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 92.44 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 92.26 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 91.53 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 89.64 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 85.64 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 82.86 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=411.79 Aligned_cols=517 Identities=44% Similarity=0.733 Sum_probs=458.7
Q ss_pred cchhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008719 2 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 81 (556)
Q Consensus 2 ~~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~ 81 (556)
+||+++||+..++..|+++++|.+..++...++.|...+...++++++++|.|+||.+++.++.++..+|..++.+++..
T Consensus 48 ~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~ 127 (571)
T KOG1237|consen 48 LERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMI 127 (571)
T ss_pred HHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
+.+.|.+- .-.+.+.+|+.+...+...++.++.+..+|.|+.+|+..++.+||+++..+.+++++.++|+|+|...+
T Consensus 128 ~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~ 204 (571)
T KOG1237|consen 128 PALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQN 204 (571)
T ss_pred hhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHH
Confidence 87766421 111224469999999999999999999999999999999999999997777777788899999999999
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccc
Q 008719 162 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGL 241 (556)
Q Consensus 162 lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (556)
+|..++-.+..++++..+|.+.|.+..+..++++++++...+.+++++|.++++..+.++++.+.+++....+..+.. +
T Consensus 205 ~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~ 283 (571)
T KOG1237|consen 205 GGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L 283 (571)
T ss_pred HHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877665433 2
Q ss_pred cccCCCCccccCCCccccCCchhHhHHHHhhhccCC---CCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcc
Q 008719 242 YEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFL 318 (556)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (556)
++.........+.++.+++|+++....++. ....+|+.|+.+++++.|..++.++.+....++++++.|+.
T Consensus 284 ------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~ 357 (571)
T KOG1237|consen 284 ------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMV 357 (571)
T ss_pred ------cccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhh
Confidence 111122233344667788888877765432 22567999999999999999999999999999999999999
Q ss_pred hhHHHHhhhccccccc-ccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008719 319 TLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGI 397 (556)
Q Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~ 397 (556)
+.+..|...+|++.++ +.+|++.++.+..+..++..|+.++...|+.||.++++.+.+.+.++++|+++..++|...+.
T Consensus 358 t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~ 437 (571)
T KOG1237|consen 358 TFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGI 437 (571)
T ss_pred hheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHH
Confidence 9999999999999987 999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHH
Q 008719 398 FERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS 477 (556)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~ 477 (556)
.+..|.+...++ ...+++ ++++|++++|+++|++|++..+..+++.++++|++||+.+++++.+..++|++++.
T Consensus 438 vE~krl~~~~~~-----~~~~~~-mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss 511 (571)
T KOG1237|consen 438 VEAKRLKTAVSL-----LVETNP-MSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSS 511 (571)
T ss_pred HHHHHhhhhhhc-----cCCCCC-eeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988776541 111345 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCCCCccc-CCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 008719 478 ILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 538 (556)
Q Consensus 478 ~l~~~i~~~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~~ 538 (556)
.++..+...++ + ..+|++ +++|.+|.+++||.++..+.++...+..+.+++++++.+
T Consensus 512 ~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 512 VLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred HHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence 99998877654 2 468999 999999999999999999999998888887777665543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=337.11 Aligned_cols=445 Identities=17% Similarity=0.256 Sum_probs=342.7
Q ss_pred CcchhhhhhhHHhHHHHHHHhhC----CChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008719 1 MAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 76 (556)
Q Consensus 1 ~~~~~~~~~~~~~~~~yl~~~lg----~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~ 76 (556)
+|||++|||+...+..|++..++ +|++++..+.++|....++.+++|||+|||++|+||++..+.++.++|.++++
T Consensus 31 ~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~ 110 (498)
T COG3104 31 LWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLA 110 (498)
T ss_pred HHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999888 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHH
Q 008719 77 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 156 (556)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 156 (556)
.+.. .....++++.+++++|.|++.|+++++++|++|+++++ |..+++++
T Consensus 111 ~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~f 160 (498)
T COG3104 111 ISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLF 160 (498)
T ss_pred cccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEE
Confidence 8620 24578999999999999999999999999999999876 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccC--CCCCch------hHHHHHHHHHHhh
Q 008719 157 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPL------TRVAQVLVAAFRK 228 (556)
Q Consensus 157 ~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~ 228 (556)
|++.|+|+.++|.+.+++.+++||+..|.++++.+.++++.++..+++..... +++.+. .....++......
T Consensus 161 Y~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (498)
T COG3104 161 YMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAA 240 (498)
T ss_pred EEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988887654432 222221 1111111111110
Q ss_pred c-cccccccccccccccCCCCccccCCCccccCCchhHh-HHHHhhhccCC-CCCCCCcccchhhHHHHHhhhhhhhhhH
Q 008719 229 R-HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAALELKEDV-INPSPWKLCTVTQVEEVKTLVRLVPIPA 305 (556)
Q Consensus 229 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (556)
. .. + ...+..+.. ....+...... .....+ .+.. .++|++...+++++
T Consensus 241 ~~~~---------~----------------l~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~-~er~r~~~~~~Lfl 291 (498)
T COG3104 241 LLTL---------L----------------LNQNTFSGVLLVISILIAIIYFAEAFRS---PKVF-DERRRLLAAIPLFL 291 (498)
T ss_pred HHHH---------H----------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccH-HHHHHHHHHHHHHH
Confidence 0 00 0 000000000 00000000000 000111 1223 67888889999999
Q ss_pred HHHHHHHHHhhcchhHHHHhh-hcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHH
Q 008719 306 CTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIG 384 (556)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g 384 (556)
..++||+++.|+++.+..+.. +.+++..|++++++++|++|++.++++.|+..+++.|+.++. + .++...+++.|
T Consensus 292 ~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~---~ps~~~KFalG 367 (498)
T COG3104 292 FAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-K---QPSTPIKFALG 367 (498)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-C---CCCcchHHHHH
Confidence 999999999999998777665 446664458899999999999999999999999999987764 2 37888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHH
Q 008719 385 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY 464 (556)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl 464 (556)
+++++.+++.+........+ .+ +..+.+|+++.|+++++||.+.+|..++++++.+|+.+.+..||+
T Consensus 368 l~l~g~~fl~l~~~~~~~~~---~~----------~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~ 434 (498)
T COG3104 368 LILAGLGFLILLLAGIWFGG---PS----------GLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAM 434 (498)
T ss_pred HHHHHHHHHHHHHHHHhhcC---CC----------CCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHH
Confidence 99999999988877543211 01 126899999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008719 465 AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 533 (556)
Q Consensus 465 ~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~ 533 (556)
|.+....|..++..+.+.... ++ ...+...+..+|+.++...++..+......++.+
T Consensus 435 wfLt~a~~~~l~g~va~~~~~-~~-----------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~ 491 (498)
T COG3104 435 WFLTVAAGQTLGGQVAGLTAV-TD-----------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN 491 (498)
T ss_pred HHHHHHHHHHhhceecccccc-cc-----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999988888773221 11 0012223346788888888877777666665433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=328.09 Aligned_cols=453 Identities=11% Similarity=0.170 Sum_probs=320.0
Q ss_pred CcchhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008719 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 1 ~~~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~ 80 (556)
++||++||++..+++.|+++++|++..+++++.+.|....++..+++|+++||++||||+++++.+++.+++++++++.
T Consensus 24 ~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~- 102 (489)
T PRK10207 24 LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL- 102 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4799999999999999999999999999999999999999999999999999978999999999999999999998861
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
.....++++|+++|+|.|...|+..++++|++|+++++ |+++++++|+..
T Consensus 103 --------------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~ 152 (489)
T PRK10207 103 --------------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSI 152 (489)
T ss_pred --------------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHH
Confidence 11234668999999999999999999999999887522 788999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCchhHHHHHHHHHHhhcccccccccc
Q 008719 161 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTRVAQVLVAAFRKRHAAFSSSEL 238 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
|+|.++||.+++++.+++|||+.|++.++..+++++.+...++..+++ +|++++. +..+.+......-.....- .
T Consensus 153 nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~~~~~~~~--~ 229 (489)
T PRK10207 153 NIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGSVVMIFVC--A 229 (489)
T ss_pred HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHHHHHHHHH--H
Confidence 999999999999999999999999998776665665555555443332 2222211 1111110000000000000 0
Q ss_pred ccccccCCCCccccCCCccccCCchhH-hHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhc
Q 008719 239 IGLYEVPGKHSAIKGSGKIAHTDDFRC-LDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF 317 (556)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (556)
+ ..+ +...... ........... + .++....+. .++++.+....++....++|..+.|.
T Consensus 230 ~-~~~---------------~~~~~~~~~~~~~~i~~~~---f-~~~~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~ 288 (489)
T PRK10207 230 W-LMH---------------NVEVANLVLIVLSIVVTII---F-FREAFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQM 288 (489)
T ss_pred H-HHh---------------hhhHHHHHHHHHHHHHHHH---H-HHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 000 0000000 00000000000 0 000001112 23444455555666678899999999
Q ss_pred chhHHHHhh-hcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 008719 318 LTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAG 396 (556)
Q Consensus 318 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~ 396 (556)
.+.+..+.. +.++...|+.+++++++++|++.+++..|+.+++.+|+.+|. .++++..++.+|+++.+++++.+.
T Consensus 289 ~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~----~~~~~~~k~~~G~~l~~~~~~~~~ 364 (489)
T PRK10207 289 PTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKG----KDLSMPMKFTLGMFLCSLGFLTAA 364 (489)
T ss_pred ccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC----CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 876666555 456666678888999999999999999999998888876663 237888889999999999987665
Q ss_pred HHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHH
Q 008719 397 IFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA 476 (556)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg 476 (556)
...... ...++ . .+.+|+++.+++.++||++.+|+.++++.+.+|++++|.++|++++.+++|+.+|
T Consensus 365 ~~~~~~---~~~~~---------~-~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg 431 (489)
T PRK10207 365 AAGMWF---ADAQG---------L-TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLG 431 (489)
T ss_pred HHHHhh---cCCCC---------c-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 433211 00111 1 4678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008719 477 SILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 533 (556)
Q Consensus 477 ~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~ 533 (556)
..+....... .....+. ....++.++|..+++.+++..+.++.+.++.+
T Consensus 432 ~~l~~~~~~~----~~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~ 480 (489)
T PRK10207 432 GYVATFTAVP----DNITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLN 480 (489)
T ss_pred HHHHHHhccc----cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888765320 0000000 01223567888888888877777766665443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=320.29 Aligned_cols=434 Identities=14% Similarity=0.150 Sum_probs=317.6
Q ss_pred CcchhhhhhhHHhHHHHHHHh--hCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 008719 1 MAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 78 (556)
Q Consensus 1 ~~~~~~~~~~~~~~~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~ 78 (556)
++||++||++.++++.|++++ +|++..+++++.+.+.++..++++++|+++||++||||++.++.++.+++.++++++
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~ 99 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999987 999999999999999999999999999999996699999999999999999888875
Q ss_pred hhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHH
Q 008719 79 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 158 (556)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (556)
.+.+.++++|++.|+|.|...|+..++++|++|+++++. |+++++++|+
T Consensus 100 ----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~---r~~~~~~~~~ 148 (475)
T TIGR00924 100 ----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR---RDGGFTLFYM 148 (475)
T ss_pred ----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc---ccceehhHHH
Confidence 345678889999999999999999999999998765221 8889999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhH-----HH------HHHHHHHh
Q 008719 159 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTR-----VA------QVLVAAFR 227 (556)
Q Consensus 159 ~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~ 227 (556)
..|+|.++||.+++++.+++||++.|.+.++..+++.+.+...++..++.++++++... .. ..+....+
T Consensus 149 ~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (475)
T TIGR00924 149 SINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFF 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999989999999998877666666665555544332222211110 00 00000111
Q ss_pred hccccccccccccccccCCCCccccCCCccccCCchhHh----HHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhh
Q 008719 228 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL----DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI 303 (556)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (556)
.... .. +....+.. ..+........ ...+ ..++ .++++....+++
T Consensus 229 ~~~~----------~~---------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~-~~~~~~~~~l~l 277 (475)
T TIGR00924 229 CAWL----------MH---------------HVVIANILLMTVTLAVIIFFFRL-AFKP----RLDA-VARNKMYAYIVL 277 (475)
T ss_pred HHHH----------Hh---------------ccHHHHHHHHHHHHHHHHHHHHH-HHhc----cCCH-HHHhHHHHHHHH
Confidence 1000 00 00000000 00000000000 0000 0112 223344456777
Q ss_pred hHHHHHHHHHHhhcchhHHHHh-hhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHH
Q 008719 304 PACTIMLNVILTEFLTLSVQQA-YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVG 382 (556)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~ 382 (556)
++...++|+.|.|..+.+..+. .++|++++++.+++++++++|++.+++..|+..++..++.||. .+++...++.
T Consensus 278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~----~~~~~~~k~~ 353 (475)
T TIGR00924 278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG----KDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC----CCCCcHHHHH
Confidence 8888899999999998665433 4567777778899999999999999999999987766666552 1256667789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHH
Q 008719 383 IGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 462 (556)
Q Consensus 383 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 462 (556)
+|+++.++++..++..... .+.+ .+ .+++|+++++++.++||.+..|..++++++.+|+++||+++
T Consensus 354 ~G~~l~~~~~~~~~~~~~~----~~~~---------~~-~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~ 419 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWF----ADAG---------GL-TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQML 419 (475)
T ss_pred HHHHHHHHHHHHHHHHHhh----cCCC---------Cc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999888765211 1111 12 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008719 463 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 532 (556)
Q Consensus 463 gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~ 532 (556)
|++.+...+|+.+++.+.+..... .+| .++|..++...++..+..+...++.
T Consensus 420 g~~~l~~~~g~~l~~~~~~~~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (475)
T TIGR00924 420 GMWFLAQAMGSLLGGYLATFGAVP--------QGV----------TGVFGKIGLVTLLVGVVMALMVPWL 471 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--------cch----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888865431 112 3566777777766666666655543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=312.84 Aligned_cols=444 Identities=15% Similarity=0.219 Sum_probs=316.4
Q ss_pred CcchhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008719 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 1 ~~~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~ 80 (556)
++||+++|++..+++.|+++++|++.++++++.+.+.......++++|+++||++|||++++++.++..+++.+++++.
T Consensus 31 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~- 109 (500)
T PRK09584 31 LWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG- 109 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4799999999999999999999999999999999988888888899999999944999999999999999988888751
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
.+...++++|+++|+|.|...|+..++++|++|+++.+ |.++++++|+..
T Consensus 110 --------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~ 159 (500)
T PRK09584 110 --------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSI 159 (500)
T ss_pred --------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHH
Confidence 23456778899999999999999999999999876532 667899999999
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCchh--H----HHHHHHHHHhhcccc
Q 008719 161 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT--R----VAQVLVAAFRKRHAA 232 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~----~~~~~~~~~~~~~~~ 232 (556)
|+|.++||.+++++.+++||++.|++.++..+++++.++..++..+++ ++++++.. . ...+.........
T Consensus 160 ~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 237 (500)
T PRK09584 160 NIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATW-- 237 (500)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999998876666665554444333222 22221111 1 1111111111000
Q ss_pred ccccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHH
Q 008719 233 FSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNV 312 (556)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (556)
+..+. +.. ................. ..+..++ .++++....+.+++..+++|+
T Consensus 238 --------~~~~~----------~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~i~f~~ 290 (500)
T PRK09584 238 --------LLHNQ----------EIA-RMALGVVALGIVVIFGK-------EAFAMKG-AARRKMIVAFILMLEAIIFFV 290 (500)
T ss_pred --------HHhcc----------hHH-HHHHHHHHHHHHHHHHH-------HHhhcCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000 00000000000000000 0001112 345555555666777888999
Q ss_pred HHhhcchhHHHHhh-hcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHH
Q 008719 313 ILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILS 391 (556)
Q Consensus 313 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~ 391 (556)
.+.|.++.+..+.. +.++++.++.+++++++++|++.++++.|+.+++..++.+| .+...++.+|+++++++
T Consensus 291 ~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~ 363 (500)
T PRK09584 291 LYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGA 363 (500)
T ss_pred HHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHH
Confidence 99999998877654 45666677888999999999999999999998887776666 45678899999999999
Q ss_pred HHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhH
Q 008719 392 VIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL 471 (556)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~i 471 (556)
++.+...... .+.++ . .+.+|+++.+++.++||++.+|..++++.+.+|+++||+++|++.+...+
T Consensus 364 f~~l~~~~~~----~~~~~---------~-vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~ 429 (500)
T PRK09584 364 FLVLPLGAKF----ANDAG---------I-VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAG 429 (500)
T ss_pred HHHHHHHHHh----cCCCC---------c-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9988776421 12222 2 56779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008719 472 GCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 533 (556)
Q Consensus 472 g~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~ 533 (556)
|+.++..+.+.+... ....... ...+.+..+|..+++++++..+..+...++.+
T Consensus 430 g~~~~g~~~~~~~~~----~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~ 483 (500)
T PRK09584 430 AALIAGYVANLMAVP----DNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLN 483 (500)
T ss_pred HHHHHHHHHHHhccc----cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887654310 0000000 11123567788888887766666666555444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=305.66 Aligned_cols=445 Identities=14% Similarity=0.161 Sum_probs=314.4
Q ss_pred CcchhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhh
Q 008719 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 1 ~~~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~ 80 (556)
++||+++|++..+++.|+++.+|+++.+++.+.+.+.....++++++|+++||++||||+++++.++..++.++++...
T Consensus 19 ~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~- 97 (493)
T PRK15462 19 IWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE- 97 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-
Confidence 4799999999999999999999999999999999999999999999999999944999999999999999987766431
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
.+...++++..+.++|.|...|+.+++++|++|+++++ |+++++++|...
T Consensus 98 --------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~ 147 (493)
T PRK15462 98 --------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAG 147 (493)
T ss_pred --------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHH
Confidence 11233555666677888999999999999999886432 999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCC-CCCchh--HH----HHHHHHHHhhccccc
Q 008719 161 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLT--RV----AQVLVAAFRKRHAAF 233 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~----~~~~~~~~~~~~~~~ 233 (556)
|+|+.++|.+.+++.+++||++.|.+.++.++++++.++..++.+.+... ++++.. .. ...+.....-.
T Consensus 148 nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 223 (493)
T PRK15462 148 NVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVAT---- 223 (493)
T ss_pred HHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999887777777666665554433211 111110 10 00000000000
Q ss_pred cccccccccccCCCCccccCCCccccCCchhHh-HH---HHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHH
Q 008719 234 SSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DK---AALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIM 309 (556)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (556)
+. +... ...+ ...... .. .....-. ... ......+|+|++...+.++...++
T Consensus 224 ~~-----~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~er~r~~~~~~l~~~~~~ 279 (493)
T PRK15462 224 PA-----LITV-----------LFWK-EWSVYALIVATIIGLGVLA------KIY-RKAENQKQRKELGLIVTLTFFSML 279 (493)
T ss_pred HH-----HHHH-----------HHHH-HHHHHHHHHHHHHHHHHHH------HHH-HhcCCHHHHhhHHHHHHHHHHHHH
Confidence 00 0000 0000 000000 00 0000000 000 001123567788888888999999
Q ss_pred HHHHHhhcchhHHHHh-hhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHH
Q 008719 310 LNVILTEFLTLSVQQA-YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVS 388 (556)
Q Consensus 310 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~ 388 (556)
||+.|.|.++.+...+ .+.|+++.++++|++++|++|++.++++.|+...+..++.|| +++++...++..|+++.
T Consensus 280 Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~ 355 (493)
T PRK15462 280 FWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLM 355 (493)
T ss_pred HHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHH
Confidence 9999999999766555 477888889999999999999999999999999988777543 12378888999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHH
Q 008719 389 ILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALA 468 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~ 468 (556)
++++.++...... .+.+| . .+.+|++..++++++||.+.+|..++++.+.+|++.||++||++.+.
T Consensus 356 g~~f~~l~~~~~~----~~~~~---------~-~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~ 421 (493)
T PRK15462 356 SAGFCILTLSARW----SAMYG---------H-SSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLL 421 (493)
T ss_pred HHHHHHHHHHHhh----cCCCC---------C-cCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 9999888765432 11112 1 57889999999999999999999999999999999999999999874
Q ss_pred H-hHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHH-HHHHHHH
Q 008719 469 G-GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN-FCAFLYS 528 (556)
Q Consensus 469 ~-~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~-~i~~~~~ 528 (556)
. .+|+.++..+.........+|... +.+ +..++..+|..++..+++. .++.+.+
T Consensus 422 ~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~ 477 (493)
T PRK15462 422 SGAIANYLAGVIADQTSQASFDASGA-----INY-SINAYIEVFDQITWGALACVGVVLMIW 477 (493)
T ss_pred HHHHHHHHHHHHHHHhccccCCcccc-----ccc-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 688888877777553211100000 000 1123556777777777665 4433333
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-29 Score=275.20 Aligned_cols=336 Identities=24% Similarity=0.416 Sum_probs=273.6
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
++|||+...+.+|+++.+|++++++..+.+.|.....+.++++|+++|+++||+|++.++.++..+|.+++++++..+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999886432111
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.+ .+....+++..+..+|.|+++|+..++.+|++++++. ..|.++++++|+++|+|+
T Consensus 81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGS 137 (654)
T TIGR00926 81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGS 137 (654)
T ss_pred cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHH
Confidence 11 2345577899999999999999999999999986432 238999999999999999
Q ss_pred HHHHHHHHHhhccc-------chhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccc
Q 008719 165 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE 237 (556)
Q Consensus 165 ~~g~~i~~~l~~~~-------gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
.+++.+.+++.+++ +|...|.++++.++++++++...++++++++|.+++...+.+++..+.+++....++
T Consensus 138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~-- 215 (654)
T TIGR00926 138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE-- 215 (654)
T ss_pred HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc--
Confidence 99999999998543 699999999999999999988888877777776666666666666655543221110
Q ss_pred cccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhc
Q 008719 238 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF 317 (556)
Q Consensus 238 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (556)
....+|++.+.... ..+.++++|++++.+++++...++|.++.|+
T Consensus 216 ----------------------~~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~ 260 (654)
T TIGR00926 216 ----------------------HWPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ 260 (654)
T ss_pred ----------------------ccchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00124454433221 2345678899999999999999999999999
Q ss_pred chhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008719 318 LTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGI 397 (556)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~ 397 (556)
.+.+..|+..++.+++++.+++.+++.+|++.++++.|+.++...++.+|... .+++..++++|+++++++++++..
T Consensus 261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ 337 (654)
T TIGR00926 261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAAL 337 (654)
T ss_pred hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888778889999999999999999999999777777766432 278899999999999999998877
Q ss_pred HHHHHh
Q 008719 398 FERYRR 403 (556)
Q Consensus 398 ~~~~~~ 403 (556)
.+..+.
T Consensus 338 ve~~~~ 343 (654)
T TIGR00926 338 VQLKVN 343 (654)
T ss_pred HHHHHh
Confidence 765543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=251.53 Aligned_cols=155 Identities=15% Similarity=0.055 Sum_probs=133.8
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 90 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 90 (556)
...+.+++.+++|++..+.+++.+++.++..++.+++|+++|| +|||++++++.++.+++.++++++
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa------------ 252 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFV------------ 252 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 4445567778899999999999999999999999999999999 899999999999999988888876
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 91 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
.+.+.++++|++.|+|.|+..|+..++++|.+|++. |++.+++......+|.++++.+
T Consensus 253 ----------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~l 310 (742)
T TIGR01299 253 ----------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAM 310 (742)
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999887 9999999999999999999987
Q ss_pred HHHhhcc-------------cchhHHHHHHHHHHHHHHHHHHH
Q 008719 171 VVYIQME-------------HGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 171 ~~~l~~~-------------~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
+.++... .+||+.+++.++..+++++..++
T Consensus 311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 7665432 36899998887766655544433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=242.15 Aligned_cols=406 Identities=14% Similarity=0.121 Sum_probs=235.1
Q ss_pred CCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCC
Q 008719 23 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 102 (556)
Q Consensus 23 g~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (556)
|.+..+.+++.+.+.++..++++++|+++|| +||||+++++.+++.++.++++.+........
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~---------------- 113 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIG---------------- 113 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhcccccccc----------------
Confidence 8999999999999999999999999999999 89999999999999888887776421100000
Q ss_pred CccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-------
Q 008719 103 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ------- 175 (556)
Q Consensus 103 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~------- 175 (556)
.+.......++++|+++|++.|...|...++++|++|+++ |++++++......+|.++++.+++.+.
T Consensus 114 ~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 187 (479)
T PRK10077 114 PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASW 187 (479)
T ss_pred ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 0011346778899999999999999999999999999988 999999999999999999987766543
Q ss_pred -cccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCC
Q 008719 176 -MEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 254 (556)
Q Consensus 176 -~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 254 (556)
..+|||++|++.++..++..+..++ .++.++....+.......+..
T Consensus 188 ~~~~gWr~~f~~~~~~~~~~~~~~~~-l~~s~~~l~~~~~~~~~~~~~-------------------------------- 234 (479)
T PRK10077 188 LNTDGWRYMFASEAIPALLFLMLLYF-VPETPRYLMSRGKQEQAEGIL-------------------------------- 234 (479)
T ss_pred cccCChHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHcCCHHHHHHHH--------------------------------
Confidence 3578999999987776665444333 232111000000000000000
Q ss_pred CccccCCc-hhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcch-----hHHHHhhhc
Q 008719 255 GKIAHTDD-FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLT-----LSVQQAYTM 328 (556)
Q Consensus 255 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 328 (556)
++.....+ .+..+........ ..+..+..+...............+.+... ++......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~- 299 (479)
T PRK10077 235 RKIMGNTLATQALQEIKHSLDH--------------GRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK- 299 (479)
T ss_pred HHHcCChhHHHHHHHHHHHHHH--------------hhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH-
Confidence 00000000 0000000000000 000001111100000000000111111111 11111000
Q ss_pred ccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008719 329 NTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAIS 408 (556)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~ 408 (556)
+.++. ............+..++..++..++.||++|| ..+..+.++++++++.+......
T Consensus 300 ~~g~~--~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r-----------~~~i~~~~~~~v~~~~l~~~~~~------- 359 (479)
T PRK10077 300 TLGAS--TDIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT------- 359 (479)
T ss_pred HcCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----------HHHHHhHHHHHHHHHHHHHHHhc-------
Confidence 11100 00111222233444556666777777776655 34677777777777666544210
Q ss_pred cCccccccCcCCcchHHHHHHHHHHHHHHHHH-HhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Q 008719 409 HGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF-CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 487 (556)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~-~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~ 487 (556)
+ ....+.+...++.+++... ..|..+.++.|..|+++|++++|+.+..+.+|+.+++.+.+.+.+
T Consensus 360 -----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~-- 425 (479)
T PRK10077 360 -----------Q-APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK-- 425 (479)
T ss_pred -----------C-cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh--
Confidence 1 1222333344445555543 236678999999999999999999999999999999888876542
Q ss_pred CCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCc
Q 008719 488 GNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGND 543 (556)
Q Consensus 488 ~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 543 (556)
.+|+.++. +....|++.+++++++++..+++.+|+|+++.||.++.
T Consensus 426 -------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 426 -------NSWLVAHF---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred -------ccchhhhc---cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 01111110 11245677777777777766667777777666554433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=241.02 Aligned_cols=416 Identities=11% Similarity=0.006 Sum_probs=234.0
Q ss_pred CCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCC
Q 008719 23 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 102 (556)
Q Consensus 23 g~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (556)
+.++.+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.++++++.. ..
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~---~~----------------- 110 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPG---SS----------------- 110 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccC---cc-----------------
Confidence 4556678899999999999999999999999 89999999999999999888777511 00
Q ss_pred CccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc------
Q 008719 103 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------ 176 (556)
Q Consensus 103 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~------ 176 (556)
...+...++++|+++|++.|+..+....+++|.+|+++ |+++.++.+....+|.++++.++.++..
T Consensus 111 --~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 182 (502)
T TIGR00887 111 --PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSL 182 (502)
T ss_pred --cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 00236789999999999999999999999999999998 9999999999999999999988765532
Q ss_pred -----------------ccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccc
Q 008719 177 -----------------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELI 239 (556)
Q Consensus 177 -----------------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
.++||++|.+.++..++..+..++ +||+|+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~--------------------------------lpESpr~ 230 (502)
T TIGR00887 183 EAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT--------------------------------IPETPRY 230 (502)
T ss_pred ccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh--------------------------------CCCCHHH
Confidence 247999998887766554444333 5667776
Q ss_pred cccccCCCCc-cccCCCccccCCch-hHhHHHHhhhccCCCCCCCCcccchhh-H-HHHHhhhhhhhhhHH-HHHHHHHH
Q 008719 240 GLYEVPGKHS-AIKGSGKIAHTDDF-RCLDKAALELKEDVINPSPWKLCTVTQ-V-EEVKTLVRLVPIPAC-TIMLNVIL 314 (556)
Q Consensus 240 ~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~~~~~~ 314 (556)
+.++++.++ +.+...+..+.+.. +..+....+..++ .....|++..+.. . +.+++++........ .+.++...
T Consensus 231 -l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 308 (502)
T TIGR00887 231 -TADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVE-VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVN 308 (502)
T ss_pred -HHHhCcchHHHHHHHHHHhccccccCcccccchhcccc-chhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 555544321 22111111110000 0000000000000 0001121111100 0 001111110100111 11111111
Q ss_pred hhcchhHHHHhhhccccccccc-cc-----CCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHH
Q 008719 315 TEFLTLSVQQAYTMNTHMGKLK-LP-----VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVS 388 (556)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~ 388 (556)
.+.++.+ . ..+++....+.. .. ......+..+..++...+...+.||++||. .+.++..++
T Consensus 309 ~~~p~i~-~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~-----------~l~~~~~~~ 375 (502)
T TIGR00887 309 LNQKVIL-S-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP-----------IQLMGFFIL 375 (502)
T ss_pred cccHHHH-H-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh-----------HHHHHHHHH
Confidence 1111222 1 112221100000 00 000111122223334455566777777662 245566666
Q ss_pred HHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHH
Q 008719 389 ILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALA 468 (556)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~ 468 (556)
++++..++..... .+ .. ..+....++..++.....+..+.+..|..|++.|+++.|+.+..
T Consensus 376 ~~~~~~l~~~~~~-----------------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~ 436 (502)
T TIGR00887 376 TVLFFVLGFAYNH-----------------LS-TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAAS 436 (502)
T ss_pred HHHHHHHHHHHHh-----------------cc-hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHH
Confidence 6665555443210 00 01 11111111122222234566778889999999999999999999
Q ss_pred HhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCC
Q 008719 469 GGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGN 542 (556)
Q Consensus 469 ~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 542 (556)
+++|+++++.+.+.+.+..+ |.+ ++ +. +..+...|++.+++++++.+.+ ++.+|++++++||.++
T Consensus 437 ~~~~~~~~~~~~~~l~~~~~-~~~---~~-~~---~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 437 GKAGAIIGQFGFLYLAQHGD-PTK---GY-PT---GIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred hhhHHHHHHHHhhhhhcccc-ccc---cc-cc---cccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence 99999999999998765221 000 00 00 0012345777777777776654 5668888888776543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=226.21 Aligned_cols=348 Identities=13% Similarity=0.068 Sum_probs=234.0
Q ss_pred HHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccc
Q 008719 16 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 95 (556)
Q Consensus 16 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (556)
+.+.+++|.|..+.+++.+.+.++..++.++.|+++|| +||||++..+.++..+++++++.+
T Consensus 33 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~----------------- 94 (390)
T PRK03545 33 SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFIASHVLSALA----------------- 94 (390)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 56678999999999999999999999999999999999 899999999999999999888886
Q ss_pred cccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 96 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 175 (556)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~ 175 (556)
++.+.++++|+++|++.+...|...+++.|++|+++ |++++++.....++|.++||.+++.+.
T Consensus 95 -----------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 95 -----------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 578899999999999999999999999999999887 999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCCC
Q 008719 176 MEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSG 255 (556)
Q Consensus 176 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 255 (556)
+..|||++|++.++..++..+..+...|+.++++ +++..
T Consensus 158 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~--------------------------------------- 196 (390)
T PRK03545 158 QYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH--SGSLK--------------------------------------- 196 (390)
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cchHH---------------------------------------
Confidence 8899999999988876655444333222211100 00000
Q ss_pred ccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhh-hhhhhHHHHHHHHHHhhcchhHHHHhhhccccccc
Q 008719 256 KIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR-LVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK 334 (556)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (556)
++. +....+.... ....+......+..+...+.++ ....+.+..
T Consensus 197 --------~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~s~~--- 241 (390)
T PRK03545 197 --------SLP-----------------------LLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFV-QQVAGLSEN--- 241 (390)
T ss_pred --------HHH-----------------------HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcc---
Confidence 000 0000011100 0111111111122222111111 111111111
Q ss_pred ccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccc
Q 008719 335 LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFS 414 (556)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (556)
..+.+.....+..++...+..++.||..+| .+..+..+..+++.......
T Consensus 242 ---~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------------~~~~~~~~~~~~~~~l~~~~--------------- 291 (390)
T PRK03545 242 ---FATLLLLLFGGAGIIGSVLFSRLGNRHPSG------------FLLIAIALLLVCLLLLLPAA--------------- 291 (390)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhccchh------------HHHHHHHHHHHHHHHHHHHh---------------
Confidence 112222233344455555555554443222 24445555544444332221
Q ss_pred ccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCC
Q 008719 415 FLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQ 494 (556)
Q Consensus 415 ~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~ 494 (556)
.+.+.+++..++.|++.....+.....+.+..| +.|++++|+.+....+|..+|+.+.|.+.+..+
T Consensus 292 -------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g------ 357 (390)
T PRK03545 292 -------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG------ 357 (390)
T ss_pred -------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------
Confidence 144556667778888888777888888888877 588999999999999999999999998877444
Q ss_pred CCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 495 PNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 530 (556)
Q Consensus 495 ~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~ 530 (556)
+...|++.+++.+++++..+...+
T Consensus 358 ------------~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 358 ------------LSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHHcc
Confidence 245688888888887777655554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-24 Score=224.37 Aligned_cols=361 Identities=12% Similarity=0.020 Sum_probs=237.7
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
++.....+.++.|+++++|.|..+.+++.+.+.++..+++++.|+++|| +||||+++.+.++..++...+.++....+.
T Consensus 29 ~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (399)
T PRK05122 29 LTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCALSGLLYLLAGLLAAW 107 (399)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3445566788889999999999999999999999999999999999999 899999999999988887776654221000
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
...+...+++.|+++|++.+...++..++..|.+|+++ |++++++.....++|.
T Consensus 108 --------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~ 161 (399)
T PRK05122 108 --------------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGAL 161 (399)
T ss_pred --------------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHH
Confidence 00256688999999999999999999999999998887 9999999999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccccccccccc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEV 244 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (556)
++|+.+++++.+.+||++.+++.++..++..+. ..+. +.+++.+++.
T Consensus 162 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~----------------------------- 208 (399)
T PRK05122 162 AIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL---ARPR-PAVPPVKGER----------------------------- 208 (399)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH---HhcC-CCCCCCCccc-----------------------------
Confidence 999999999999899999888766543332221 1111 1000000000
Q ss_pred CCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhh-hhhhHHHHHHHHHHhhcchhHHH
Q 008719 245 PGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL-VPIPACTIMLNVILTEFLTLSVQ 323 (556)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 323 (556)
.++. +..|..... .........+.......+.++.
T Consensus 209 ------------------~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 244 (399)
T PRK05122 209 ------------------LPFR-------------------------RVLGRVWPYGMGLALASIGFGTIATFITLYYA- 244 (399)
T ss_pred ------------------hhHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 0000 000000000 0001111111111111111111
Q ss_pred HhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 324 QAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRR 403 (556)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 403 (556)
+.+.. ..........+..++..++..++.||..+| +.+..+.++.+++.+.+....
T Consensus 245 -----~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~~---- 300 (399)
T PRK05122 245 -----ARGWD----GAALALTLFGVAFVGARLLFGNLINRLGGL-----------RVAIVSLLVEILGLLLLWLAP---- 300 (399)
T ss_pred -----Hcccc----cchHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHhc----
Confidence 11110 111112223333444445555555554333 345566666666655544331
Q ss_pred hhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 008719 404 NYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 483 (556)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i 483 (556)
+.+.+++..++.|++.+...|.......+..|++.||+++|+.+....+|..+++.+.+.+
T Consensus 301 -------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 361 (399)
T PRK05122 301 -------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLV 361 (399)
T ss_pred -------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778899999988888888888999999999999999999999999999998987
Q ss_pred hhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 484 KSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 530 (556)
Q Consensus 484 ~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~ 530 (556)
.+..| +...|++.+++.+++++..+.+.+
T Consensus 362 ~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 362 ASWFG------------------YPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHcC------------------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66322 356778888887777666555444
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-24 Score=222.03 Aligned_cols=158 Identities=20% Similarity=0.168 Sum_probs=140.1
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 90 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 90 (556)
.....+++++++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++..+++.+
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~------------ 79 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFA------------ 79 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHH------------
Confidence 3444566888999999999999999999999999999999999 899999999999999998888876
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 91 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
.+.+.++++|+++|++.+...++..+++.|.+|+++ |++.+++.....++|.++++.+
T Consensus 80 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~ 137 (399)
T TIGR00893 80 ----------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPL 137 (399)
T ss_pred ----------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHH
Confidence 577899999999999999999999999999999887 9999999999999999999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 171 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 171 ~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
++++.+..+|++.|++.++..++..+..+...+
T Consensus 138 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 138 VGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHhhheec
Confidence 999998899999999888776655544444333
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=232.07 Aligned_cols=379 Identities=13% Similarity=0.023 Sum_probs=234.9
Q ss_pred HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 008719 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 91 (556)
Q Consensus 12 ~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (556)
....+.+.+++|.+.++.+|+.+.|.++..++.+++|+++|| +|||++++++..++.+++++++.+
T Consensus 26 ~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~~~~~~~a------------- 91 (495)
T PRK14995 26 HVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLASLAAAFS------------- 91 (495)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 334456678999999999999999999999999999999999 899999999999999999999986
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccC-CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 92 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF-DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
.+.+.++++|+++|+|.+...|.....+.+.+ |+++ |+++++++....++|..+||.+
T Consensus 92 ---------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~~~~~~~g~~~gp~l 150 (495)
T PRK14995 92 ---------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVWAAVGSGGAAFGPLV 150 (495)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998888887776 4455 9999999999999999999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHH-H---HHH--HHHHhhcccccccccccccccc
Q 008719 171 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV-A---QVL--VAAFRKRHAAFSSSELIGLYEV 244 (556)
Q Consensus 171 ~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~--~~~~~~~~~~~~~~~~~~l~~~ 244 (556)
++++.+++|||+.|++.....++.+++.+...|+.+.++.++...... . ... ....++.. ...|
T Consensus 151 gg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~-----~~~~----- 220 (495)
T PRK14995 151 GGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTAL-----KGFL----- 220 (495)
T ss_pred HHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcc-----ccCC-----
Confidence 999999999999999988776666555555444422211111111111 0 000 00111000 0000
Q ss_pred CCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhh-hhhHHHHHHHHHHhhcchhHHH
Q 008719 245 PGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLV-PIPACTIMLNVILTEFLTLSVQ 323 (556)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 323 (556)
....+...--............+. ....+.. +. ..-+.+...... ..+.....+... ......+.+
T Consensus 221 --------~~~~~~~~~~~~~~~l~~f~~~e~-~~~~p~~--~~-~lf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lq 287 (495)
T PRK14995 221 --------SLWVTSLTLLTGALLLGLFIRTQL-AASRPMI--DM-RLFTHRIILSGVVMAMTAMITLVGF-ELLMAQELQ 287 (495)
T ss_pred --------chHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc--CH-HHhCCcccHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 000000000000000000000000 0001110 00 001111111111 001111111111 111111222
Q ss_pred HhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 324 QAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRR 403 (556)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 403 (556)
...+.+ ....+.+.....+...+..++.+++.+|+++| +.+..|.++.+++.+.+.....
T Consensus 288 ~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~g~~~~~~~~~~l~~~~~--- 347 (495)
T PRK14995 288 FVHGLS------PLEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----------LVATGGMALSALSFYGLAMTDF--- 347 (495)
T ss_pred HHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHhcC---
Confidence 112222 11223333344455666677777776665543 3456677777777665544321
Q ss_pred hhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 008719 404 NYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 483 (556)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i 483 (556)
. .+.+...+..++.|+|.+...++....+.+.+|++.++.++++.++.+.+|+.+|+.+.+.+
T Consensus 348 ----------------~-~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 348 ----------------S-TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred ----------------C-CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 23444566788899999999999999999999999999999999999999999999999977
Q ss_pred hh
Q 008719 484 KS 485 (556)
Q Consensus 484 ~~ 485 (556)
.+
T Consensus 411 ~~ 412 (495)
T PRK14995 411 LS 412 (495)
T ss_pred HH
Confidence 54
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=221.71 Aligned_cols=358 Identities=17% Similarity=0.100 Sum_probs=231.0
Q ss_pred HHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccc
Q 008719 15 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 94 (556)
Q Consensus 15 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 94 (556)
.+.+.+++|.|+.+.+++.+.+.++..++.++.|+++|| +||||++..+.++..++.++++.+
T Consensus 38 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~---------------- 100 (406)
T PRK11551 38 APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVALFGLFSLATAQA---------------- 100 (406)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHh----------------
Confidence 345667899999999999999999999999999999999 899999999999888888777765
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 95 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 174 (556)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l 174 (556)
.+.+.+++.|+++|++.+...+...+++.|.+|+++ |++++++.+...++|..+++.+++.+
T Consensus 101 ------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 101 ------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred ------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999887 99999999999999999999999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCC
Q 008719 175 QMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 254 (556)
Q Consensus 175 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 254 (556)
.+..+|+++|++.++..++..+......++.+..+++++. .+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------------------------~~------ 204 (406)
T PRK11551 163 AGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA--------------------------------GK------ 204 (406)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc--------------------------------ch------
Confidence 8889999999987765444444333322321110000000 00
Q ss_pred CccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhccccccc
Q 008719 255 GKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK 334 (556)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (556)
. ..+..+. . + + ..+..+........+.....++....+.+.+... .+.+.
T Consensus 205 -----~-~~~~~~~---~----------~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~---- 254 (406)
T PRK11551 205 -----Q-RAPVLRA---L----------F----G-EGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG--QGLSR---- 254 (406)
T ss_pred -----h-hhhhHHH---H----------h----h-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCh----
Confidence 0 0000000 0 0 0 0000111110111111111122222222221111 11111
Q ss_pred ccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccc
Q 008719 335 LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFS 414 (556)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (556)
...+.......+..++...+..++.||+++| +.+..+.+..++++......
T Consensus 255 --~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------- 305 (406)
T PRK11551 255 --SQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAALAAA---------------- 305 (406)
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHhc----------------
Confidence 1122333344455566666666676666544 22333444444443333222
Q ss_pred ccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCC
Q 008719 415 FLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQ 494 (556)
Q Consensus 415 ~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~ 494 (556)
+ +.+.+.+..++.+++.....+..+++..+..|++.|+++.|+.+....+|..+++.+.+.+.+..+
T Consensus 306 -----~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~------ 372 (406)
T PRK11551 306 -----P--SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR------ 372 (406)
T ss_pred -----C--cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC------
Confidence 1 334455566777887777888889999999999999999999999999999999999998765322
Q ss_pred CCcccCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 008719 495 PNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS 528 (556)
Q Consensus 495 ~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~ 528 (556)
.+...++..+.+.+++.+..+..
T Consensus 373 -----------~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 373 -----------STVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHH
Confidence 12345555665665555544443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=219.76 Aligned_cols=358 Identities=11% Similarity=0.021 Sum_probs=233.6
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
+.....+.++.|+++++|.|..+.+++.+.+.++..++++++|+++|| +||||+++.+.+...++.+........+..
T Consensus 30 ~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~- 107 (392)
T PRK12382 30 TVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLAGLAYLLAAILPVS- 107 (392)
T ss_pred HHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHHHHHHHhhhccccc-
Confidence 444556677788999999999999999999999999999999999999 899999999988877665544332111100
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 165 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 165 (556)
...+.+.++++|+++|++.+...+...+++.|.+|+++ |++++++.....++|.+
T Consensus 108 -------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~ 162 (392)
T PRK12382 108 -------------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALA 162 (392)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHH
Confidence 01467889999999999999999999999999999887 99999999999999999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccC
Q 008719 166 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVP 245 (556)
Q Consensus 166 ~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (556)
+||.+++++.+.+||++.+.+..+..++... ..++ .++.+++++.
T Consensus 163 ~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~------------------------------- 207 (392)
T PRK12382 163 AGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNGT-VRKVPAHAGE------------------------------- 207 (392)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHHh-ccCCCCCccc-------------------------------
Confidence 9999999999889999877765443222221 1111 1110000000
Q ss_pred CCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhh-hhhhhHHHHHHHHHHhhcchhHHHH
Q 008719 246 GKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR-LVPIPACTIMLNVILTEFLTLSVQQ 324 (556)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (556)
.+ +.. +..|...+ ..........+.......+.++ .
T Consensus 208 --------------~~--~~~-------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~- 244 (392)
T PRK12382 208 --------------RP--SLW-------------------------SVVGLIWKPGLGLALQGVGFAVIGTFVSLYF-A- 244 (392)
T ss_pred --------------Cc--hHH-------------------------HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH-H-
Confidence 00 000 00000000 0000111111111111111111 1
Q ss_pred hhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 325 AYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRN 404 (556)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~ 404 (556)
+.+.. ..........+..++..++.+++.||+.+| +.+..+..+.+++.+......
T Consensus 245 ----~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~----- 300 (392)
T PRK12382 245 ----SKGWA----MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV-----------KVAIVSLLVETVGLLLLWLAP----- 300 (392)
T ss_pred ----hcCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------eehHHHHHHHHHHHHHHHHcc-----
Confidence 11110 011112223334455556666666665544 224556666666655443321
Q ss_pred hhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 008719 405 YAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 484 (556)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~ 484 (556)
+.+...+..++.+++.+...|...+...+..|++.||++.|+.++...+|..+++.+.+.+.
T Consensus 301 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~ 362 (392)
T PRK12382 301 ------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA 362 (392)
T ss_pred ------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788899999888888888899999999999999999999999999999999887
Q ss_pred hccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 008719 485 SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS 528 (556)
Q Consensus 485 ~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~ 528 (556)
+..| | ...|++.+++.+++.+..+..
T Consensus 363 ~~~g--------~----------~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 363 TSFG--------Y----------PSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHhC--------c----------hHHHHHHHHHHHHHHHHHHhh
Confidence 6433 2 456788887777776655443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=218.28 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=129.2
Q ss_pred chhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008719 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 3 ~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~ 82 (556)
++.+.+.+.+.++ .+++++|+|..|.+++.+.+.++..+++++.|+++|| +|||+++..+......+. ++....
T Consensus 3 ~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~-~~~~~~--- 76 (368)
T TIGR00903 3 SQAIWVTFSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAA-GRLLDP--- 76 (368)
T ss_pred hhHHHHHHHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH-HHHHHh---
Confidence 4455555555555 5567899999999999999999999999999999999 899998765554444332 222210
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 162 (556)
.++..+++.|+++|+|.+.. +......+|++|+++ |+++.++.....++
T Consensus 77 ------------------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~l 125 (368)
T TIGR00903 77 ------------------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYL 125 (368)
T ss_pred ------------------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHH
Confidence 36788999999999999964 555666699999877 99999999999999
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 163 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
|.++++.+++++.+++|||+.|++.++..++..++.+...|
T Consensus 126 G~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 126 GIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999977765555544444333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=221.15 Aligned_cols=341 Identities=14% Similarity=0.121 Sum_probs=228.5
Q ss_pred cchhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008719 2 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 81 (556)
Q Consensus 2 ~~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~ 81 (556)
+...+++.+.+.++.|+++++|+|..+.|.+.+.+.+...+..+++|+++|| +|||+++..+.++..++.+++...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~--- 96 (400)
T PRK11646 21 LVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFATMAIA--- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHHh---
Confidence 3457788899999999999999999999999999999999999999999999 899999999999999998888775
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
.+.+.+++.|+++|++.+...|...+++.|.+|+++ |+++.++.+...+
T Consensus 97 -------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~ 145 (400)
T PRK11646 97 -------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDS 145 (400)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 467888999999999999999999999999999877 9999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccc
Q 008719 162 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGL 241 (556)
Q Consensus 162 lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (556)
+|..+||.+++++. .+||+++|++.++..++..++..+..++.+. ++.+++ ..
T Consensus 146 ~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~---~~---------------------- 198 (400)
T PRK11646 146 AGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTP---VR---------------------- 198 (400)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchh---hH----------------------
Confidence 99999999999998 6899999999887665554443333322100 000000 00
Q ss_pred cccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhH
Q 008719 242 YEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLS 321 (556)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (556)
.++. ...++ +...... .....++..+.+.....
T Consensus 199 ---------------------~~~~----------------------~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 231 (400)
T PRK11646 199 ---------------------EGMT----------------------RVLRD-KRFVTYV---LTLTGYYMLAVQVMLML 231 (400)
T ss_pred ---------------------HHHH----------------------HHHcC-chHHHHH---HHHHHHHHHHHHHHHhh
Confidence 0000 00001 1111111 11111111111111111
Q ss_pred HHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008719 322 VQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY 401 (556)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~ 401 (556)
+.+.. +.. +.....+.+.....+......... .++..|. .+..+.+..+.++.++++..+....
T Consensus 232 p~~~~--~~~--~~~~~~g~l~~~~~~~~~~~~~~~----~~~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~-- 295 (400)
T PRK11646 232 PIMVN--DIA--GSPSAVKWMYAIEACLSLTLLYPI----ARWSEKR------FRLEHRLMAGLLIMSLSMFPIGMVS-- 295 (400)
T ss_pred hhhHH--hhc--CCchHHHHHHHHHHHHHHHHHHHH----HHHHHHh------cchhHHHHHHHHHHHHHHHHHHHhh--
Confidence 11111 000 000011111112222222222112 2222211 2223345667777777766554432
Q ss_pred HhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHH
Q 008719 402 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 481 (556)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~ 481 (556)
+.+.+++..++.+++++...|...+++.+.+|++.||+++|+.++...+|..+|+.+.+
T Consensus 296 ---------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G 354 (400)
T PRK11646 296 ---------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGG 354 (400)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchH
Confidence 23444555677888999999999999999999999999999999999999999999999
Q ss_pred HhhhccC
Q 008719 482 IIKSVTG 488 (556)
Q Consensus 482 ~i~~~~~ 488 (556)
.+.+..+
T Consensus 355 ~l~~~~~ 361 (400)
T PRK11646 355 WLFDLGK 361 (400)
T ss_pred HHHHHHh
Confidence 9887543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=222.97 Aligned_cols=377 Identities=15% Similarity=0.045 Sum_probs=235.8
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 90 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 90 (556)
...++.+. ++++.+..+.|++.+.+.++..++.++.|+++|| +|||+++..+..+..++..+++......
T Consensus 37 ~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 106 (417)
T PRK10489 37 GVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGLALNAFLP-------- 106 (417)
T ss_pred HHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHHHHHHHcC--------
Confidence 33344444 5688899999999999999999999999999999 8999999998888887776665421100
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 91 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
..+.+.+++.|++.|++.+...++..+++.|.+|+++ |+++.++.+...++|..+||.+
T Consensus 107 ---------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l 165 (417)
T PRK10489 107 ---------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPAL 165 (417)
T ss_pred ---------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHH
Confidence 0356788899999999999988999999999998877 9999999999999999999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCcc
Q 008719 171 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 250 (556)
Q Consensus 171 ~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (556)
++.+.+..+|++.|++.++..+++.+..+..++..+.+++++++..
T Consensus 166 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------------------------- 211 (417)
T PRK10489 166 GGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLR---------------------------------- 211 (417)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchH----------------------------------
Confidence 9999888899999998777665554443332211000000000000
Q ss_pred ccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhccc
Q 008719 251 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 330 (556)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (556)
+..+. + ....+.+......................+ .+..+..+.+.
T Consensus 212 -------------~~~~~--------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~ 258 (417)
T PRK10489 212 -------------SLLAG--------------F-----RFLLASPVVGGIALLGGLLTMASAVRVLYP-ALADEVWQMGA 258 (417)
T ss_pred -------------HHHHH--------------H-----HHHHcChHHHHHHHHHHHHHHHHhHHHhhH-HHHHhccCCCh
Confidence 00000 0 000000111100000011111111111111 11111111111
Q ss_pred ccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 008719 331 HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHG 410 (556)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (556)
. ..+.+.....+..++...+..++.+ | ..+.+.+..+.++.+++++.....
T Consensus 259 ~------~~g~~~~~~~~g~~ig~~~~~~l~~----~-------~~~~~~l~~~~~~~~~~~~~~~~~------------ 309 (417)
T PRK10489 259 A------QIGLLYAAVPLGAALGALTSGWLAH----S-------ARPGLLMLLSTLGSFLAVGLFGLM------------ 309 (417)
T ss_pred h------HhHHHHHHHHHHHHHHHHHHHHhhh----c-------cCcchHHHHHHHHHHHHHHHHHcc------------
Confidence 1 1222333333444444444444332 2 111233556666666665554332
Q ss_pred ccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCC
Q 008719 411 YEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 490 (556)
Q Consensus 411 ~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~ 490 (556)
+ +.+.+....++.|++.+...+...++..+..|++.||+++|+.+....+|..+|+.+.|.+.+..+
T Consensus 310 ---------~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-- 376 (417)
T PRK10489 310 ---------P--MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-- 376 (417)
T ss_pred ---------c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc--
Confidence 1 344556667778888888888888899999999999999999999999999999999998877433
Q ss_pred CCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCc
Q 008719 491 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGND 543 (556)
Q Consensus 491 ~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 543 (556)
....++..++..++..+..+...++.|++++||.++|
T Consensus 377 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 377 ----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred ----------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 1234555665555555555555567676666666554
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-23 Score=224.98 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=120.8
Q ss_pred hhHHhHHHHHHHhhCCChhh-HhH-----HHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008719 9 GLSVNMVTFMFYVMHKSFAD-SSN-----AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~~~-~~~-----~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~ 82 (556)
++.....+++.++++.+.++ .++ +.++..++..+++++.|+++|| +|||+++.++.++++++.++++++.+..
T Consensus 33 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~a~~~~~~ 111 (490)
T PRK10642 33 GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAITIVIMSISTFCIGLIPSYA 111 (490)
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 34555667888888654432 222 2466778899999999999999 8999999999999999999999872100
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 162 (556)
... -.....+++.|+++|+|.|+..++..++++|++|+++ |++..++...+.++
T Consensus 112 ~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~ 165 (490)
T PRK10642 112 TIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIA 165 (490)
T ss_pred HHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHH
Confidence 000 0111358899999999999999999999999999988 99999999888888
Q ss_pred HHHHHHHHHHHhh--------cccchhHHHHHHHHHHH
Q 008719 163 GAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 192 (556)
Q Consensus 163 G~~~g~~i~~~l~--------~~~gw~~~f~i~~~~~~ 192 (556)
|.++|+.+...+. .++|||++|++.++..+
T Consensus 166 G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 166 GFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 8888886654442 25799999999765444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=215.60 Aligned_cols=349 Identities=14% Similarity=-0.002 Sum_probs=227.8
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
++.......++.|.. ++|.+..+.+++.+.+.++..++.++.|+++|| +||||+++.+.++..++..++.......
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~-- 88 (365)
T TIGR00900 13 IGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLPFVALLG-- 88 (365)
T ss_pred HHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 344445566666765 689999999999999999999999999999999 8999999999998888887777652100
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
+.+.+.+++.|+++|++.+...|+..+++.|.+|+++ |++.+++.+...++|.
T Consensus 89 ---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~ 141 (365)
T TIGR00900 89 ---------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFY 141 (365)
T ss_pred ---------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHH
Confidence 0267889999999999999999999999999999887 9999999999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccccccccccc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEV 244 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (556)
++||.+++++.+..||++.|++.++..+++.+..+..+.+.+.++ ++++..
T Consensus 142 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------------- 192 (365)
T TIGR00900 142 IVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-EIQALS---------------------------- 192 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-cccccc----------------------------
Confidence 999999999999899999999887766555544433322111100 000000
Q ss_pred CCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhh-hHHHHHHHHHHhhcchhHHH
Q 008719 245 PGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACTIMLNVILTEFLTLSVQ 323 (556)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 323 (556)
.....+..+. + +...+.+.+...... ......+..........+..
T Consensus 193 --------------~~~~~~~~~~--------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (365)
T TIGR00900 193 --------------NAVLRDTREG--------------I-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQS 239 (365)
T ss_pred --------------hhHHHHHHhH--------------H-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 0000000000 0 000001111111110 11111111111111122222
Q ss_pred HhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 324 QAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRR 403 (556)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 403 (556)
+..+.+.. ..+.+.....+..++...+..++.++..+| +.+..+..+.++++.......
T Consensus 240 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---- 298 (365)
T TIGR00900 240 KYLGRGST------HYGWVLAAFGLGALLGALLLGLLGRYFKRM-----------ALMTGAIFVIGLAILVVGLTP---- 298 (365)
T ss_pred HHhCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----------HHHHHHHHHHHHHHHHHHhhc----
Confidence 11121111 112233333444455555555444443322 335555555665555544331
Q ss_pred hhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 008719 404 NYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 483 (556)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i 483 (556)
+ +.+...+..++.+++.+...+...++..+..|++.|++++|+.+....++..+++.+.+.+
T Consensus 299 ----------------~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 299 ----------------P--NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred ----------------h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 2455667788899999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 008719 484 KS 485 (556)
Q Consensus 484 ~~ 485 (556)
.+
T Consensus 361 ~~ 362 (365)
T TIGR00900 361 AD 362 (365)
T ss_pred HH
Confidence 66
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=227.68 Aligned_cols=402 Identities=14% Similarity=0.064 Sum_probs=264.9
Q ss_pred HhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccchh
Q 008719 29 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 108 (556)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (556)
-+.+++++.+|+++++.++|+++|| +|||+.++++.++..++..++.++... ..
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~ 115 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSA-------------------------PS 115 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hh
Confidence 4677888999999999999999999 899999999999998888888776331 46
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH-HH-hhcccchhHHHHH
Q 008719 109 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VY-IQMEHGWGSAFGA 186 (556)
Q Consensus 109 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~-~~-l~~~~gw~~~f~i 186 (556)
..+++++|++.|+..|........++.|..|++- ||..-.......++|.++|..++ .. +...-.|++.+.+
T Consensus 116 ~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~ 189 (485)
T KOG0569|consen 116 FEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAF 189 (485)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHH
Confidence 7899999999999999999999999999999998 99999999999999999996555 23 3345569999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccc-cCCCCccccCCCccccCCchh-
Q 008719 187 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHTDDFR- 264 (556)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~- 264 (556)
..+..++.++...+ +||||+| |+. ++++++|++..+.++..++.+
T Consensus 190 ~~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~~~~~~ 236 (485)
T KOG0569|consen 190 PLIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGKEDVEA 236 (485)
T ss_pred HHHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCCCcchh
Confidence 88887777666555 8999999 555 888888888777665543322
Q ss_pred HhHH--HHhhhccCCC-CCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhcccccccccccCCc
Q 008719 265 CLDK--AALELKEDVI-NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 341 (556)
Q Consensus 265 ~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (556)
..+. ...+..+..+ ....+.+..+++. .|+.+...+.+...+.+.......+++.... .+..+. .-.+.+
T Consensus 237 ~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~-lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~----~~aG~~--~~~a~~ 309 (485)
T KOG0569|consen 237 EIEEMLREIEEEELEKKKQISLRQLLKNPT-LRRPLLIGIVVSFAQQFSGINAIFFYSTSIF----KTAGFT--PEEAQY 309 (485)
T ss_pred HHHHHHHHHHHhccccccCCcHHHHhcCcc-hhHHHHHHHHHHHHHHhcCcceeHHHHHHHH----HHcCCC--HHHHHH
Confidence 2221 1111111100 1111111111110 1111111111111111111110011111111 111110 111233
Q ss_pred ccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCc
Q 008719 342 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 421 (556)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (556)
.+.......++...+...++|+.+||. .+.++..++.+..+.+........... +
T Consensus 310 an~~~g~v~~~~t~~~~~lid~~gRRp-----------Lll~~~~~~~~~~~~~~~~~~l~~~~~-------------~- 364 (485)
T KOG0569|consen 310 ANLGIGIVNLLSTLVSPFLIDRLGRRP-----------LLLISLSLMAVALLLMSIALFLSNSFG-------------S- 364 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhh-------------h-
Confidence 344445555666666667777887773 366666666666666655543211000 1
Q ss_pred chHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccC
Q 008719 422 LSAYWLLIQYCLIGIA-EVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 500 (556)
Q Consensus 422 ~~~~~lii~~~l~g~g-~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~ 500 (556)
+..+..+.+.++..++ .....|..+-+..|.+|++.|+.++++..+.+++.+++.....+.+....|
T Consensus 365 ~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g------------ 432 (485)
T KOG0569|consen 365 WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG------------ 432 (485)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 1222233344444433 334578899999999999999999999999999999999999999988766
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCchhh
Q 008719 501 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEV 546 (556)
Q Consensus 501 ~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~ 546 (556)
.++|+.+++.+++..+..+...||+|+|+.+|+.++.+.
T Consensus 433 -------~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 433 -------PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred -------chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 266888889999998989999999999987766555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-23 Score=218.69 Aligned_cols=359 Identities=11% Similarity=0.006 Sum_probs=231.4
Q ss_pred hhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008719 9 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 88 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 88 (556)
.+.+.+ +.+++++|+|.++.+++.+.+.++..+++++.|+++|| +|||+++..+..+++++.++++++
T Consensus 27 ~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a---------- 94 (393)
T PRK09705 27 SVGPLL-PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELY---------- 94 (393)
T ss_pred ccchhH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHC----------
Confidence 334334 46678999999999999999999999999999999999 899999999999999999999987
Q ss_pred CCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 008719 89 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 168 (556)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 168 (556)
.+++.++++|+++|+|.+...++...++.+++| ++ |+++++.+....++|..+|+
T Consensus 95 ------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~ 149 (393)
T PRK09705 95 ------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGA 149 (393)
T ss_pred ------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999886 55 89999999999999999999
Q ss_pred HHHHHhhccc-chhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCC
Q 008719 169 TLVVYIQMEH-GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGK 247 (556)
Q Consensus 169 ~i~~~l~~~~-gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (556)
.+++++.++. +||..+.+.++..++.....+...++. |++++ .++.
T Consensus 150 ~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---------------------~~~~-------- 196 (393)
T PRK09705 150 AITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSARE----VASSH---------------------KTTT-------- 196 (393)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCC----Ccccc---------------------CCCc--------
Confidence 9999988775 799988765555443333222211110 10000 0000
Q ss_pred CccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhh
Q 008719 248 HSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT 327 (556)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (556)
. . ...+ ++.+.....+........++......+.++.+ .+
T Consensus 197 -----------~--~-----------------~~~l--------~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g 236 (393)
T PRK09705 197 -----------T--P-----------------VRVV--------FTPRAWTLGVYFGLINGGYASLIAWLPAFYIE--IG 236 (393)
T ss_pred -----------C--C-----------------cccc--------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cC
Confidence 0 0 0000 00111111111112222233333333333322 12
Q ss_pred cccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008719 328 MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAI 407 (556)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~ 407 (556)
.+.. ..+.......+..++...+..++.+|..+| +.+.++..+.+++...+....
T Consensus 237 ~s~~------~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----------~~~~~~~~l~~~~~~~~~~~~-------- 291 (393)
T PRK09705 237 ASAQ------YSGSLLALMTLGQAAGALLMPAMARHQDRR-----------KLLMLALVLQLVGFCGFIWLP-------- 291 (393)
T ss_pred CChh------hhhHHHHHHHHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHHHHHcc--------
Confidence 2211 122233334444455555555544443332 335556556555554433221
Q ss_pred ccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcC-chhHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 008719 408 SHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGCFAASILNSIIKSV 486 (556)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~ 486 (556)
+ +...+ ..++.+++.+...|.......+..| ++.||+..|+.+....++..+++.+.+.+.+.
T Consensus 292 ------------~--~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~ 355 (393)
T PRK09705 292 ------------L--QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSI 355 (393)
T ss_pred ------------c--hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111 2345577777777777777777764 68999999999999999999999999999885
Q ss_pred cCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008719 487 TGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 535 (556)
Q Consensus 487 ~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~ 535 (556)
.| ++...|.+.++..++.....+.+.+|++++
T Consensus 356 ~g-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 356 SG-----------------NYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred hC-----------------CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 54 123456666777777666666666665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-23 Score=223.09 Aligned_cols=387 Identities=11% Similarity=0.014 Sum_probs=234.4
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
.+..+.+.+.++.+.+ ++|.+..+.+++.+.+.++..++.+++|+++|| +|||++++.+..+..++.++++.+
T Consensus 23 ~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~----- 95 (471)
T PRK10504 23 SLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTLGSLFCALS----- 95 (471)
T ss_pred HHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3455667777777664 699999999999999999999999999999999 899999999998888888877765
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
.+.+.+++.|+++|++.+...|...+++.|.+|+++ |++++++.....++|
T Consensus 96 -----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g 146 (471)
T PRK10504 96 -----------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVG 146 (471)
T ss_pred -----------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999998877 999999999999999
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccc
Q 008719 164 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE 243 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (556)
..+||.+++++.++.|||+.|.+..+...++.+......++.+.++++.+................. ..+...+
T Consensus 147 ~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~---- 220 (471)
T PRK10504 147 PLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLA--LDGSKGL---- 220 (471)
T ss_pred HHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHH--HhcCCcC----
Confidence 9999999999999999999999988766655555444444322221111111000000000000000 0000000
Q ss_pred cCCCCccccCCCccccCCchhHhHH-----HHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhh--
Q 008719 244 VPGKHSAIKGSGKIAHTDDFRCLDK-----AALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTE-- 316 (556)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 316 (556)
............. ......+.. ...+. ........|..... .....+.+..+..
T Consensus 221 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~~~---l~~~~~~~~~~~~~~ 281 (471)
T PRK10504 221 ------------GLSPLAIAGLVAVGVVALLLYLLHARN-NNRAL---FSLKLFRTRTFSLG---LAGSFAGRIGSGMLP 281 (471)
T ss_pred ------------CcchHHHHHHHHHHHHHHHHHHHHHhc-CCCCc---cCHHHhcccchHHH---HHHHHHHHHHHHHHH
Confidence 0000000000000 000000000 00000 00011111111111 1111111111111
Q ss_pred -cchhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 008719 317 -FLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 395 (556)
Q Consensus 317 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~ 395 (556)
...++.++..+.+. ...+.+.....+..++..++..++.+|+++| +.+..+..+.+++..++
T Consensus 282 ~~~~~~~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~ 344 (471)
T PRK10504 282 FMTPVFLQIGLGFSP------FHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR-----------RVLVATTLGLALVSLLF 344 (471)
T ss_pred HHHHHHHHHHcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHH
Confidence 11222222122111 1112222223333444445566665555443 44566666666655544
Q ss_pred HHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHH
Q 008719 396 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFA 475 (556)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~l 475 (556)
..... . ...+.+...+++.|++.++..+..+.++.+..|++.+|.++|+.++.+.+|..+
T Consensus 345 ~~~~~-------------------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i 404 (471)
T PRK10504 345 MLVAL-------------------L-GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSI 404 (471)
T ss_pred Hhccc-------------------c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHH
Confidence 43310 1 123334455677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccC
Q 008719 476 ASILNSIIKSVTG 488 (556)
Q Consensus 476 g~~l~~~i~~~~~ 488 (556)
|+.+.+.+.+..+
T Consensus 405 g~~i~g~ll~~~g 417 (471)
T PRK10504 405 GVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-24 Score=230.54 Aligned_cols=388 Identities=10% Similarity=0.038 Sum_probs=231.6
Q ss_pred HHHHhhCCC---hhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 17 FMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 17 yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
.+.+++|++ ..+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++.++++++
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~--------------- 177 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFS--------------- 177 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHc---------------
Confidence 456789999 8999999999999999999999999999 899999999999999998888876
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
.+++.+++.|++.|++.+...+...+++.|.+|+++ |+++.++......+|.++++.++..
T Consensus 178 -------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 178 -------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred -------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999988 9999999989999999999988776
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccC
Q 008719 174 IQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG 253 (556)
Q Consensus 174 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (556)
+.+ ||+.|++.++..++..+..++..+..+....++ ......+.+....+......++.
T Consensus 239 ~~~---wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~----------------- 297 (505)
T TIGR00898 239 IPD---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQG-RIEEALKILQRIAKINGKKLPAE----------------- 297 (505)
T ss_pred hhH---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCC-CHHHHHHHHHHHHHHcCCCCCHH-----------------
Confidence 653 999999988776655555433221111000011 11111111111111110000000
Q ss_pred CCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhcccccc
Q 008719 254 SGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG 333 (556)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (556)
..+...............++ .....+..... .......+...... ++.. ..... .+
T Consensus 298 -----------~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~---~~~~~~~~~~~~~~--~~~~-~~~~~-~~- 353 (505)
T TIGR00898 298 -----------VLSLSLEKDLSSSKKQYSFL-----DLFRTPNLRKT---TLCLMMLWFTTAFS--YYGL-VLDLG-NL- 353 (505)
T ss_pred -----------HHhhhhhhhhhhccCCCcHH-----HHhCChHHHHH---HHHHHHHHHHHHHH--HHHH-hcccc-cc-
Confidence 00000000000000000000 00000111100 01111111111110 0000 00101 11
Q ss_pred cccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccc
Q 008719 334 KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEF 413 (556)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (556)
.........+..+..+....+...+.+|++|| ..+.++.++.+++.+.+....
T Consensus 354 --~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr-----------~~~~~~~~~~~~~~l~~~~~~-------------- 406 (505)
T TIGR00898 354 --GGNIYLDLFISGLVELPAKLITLLLIDRLGRR-----------YTMAASLLLAGVALLLLLFVP-------------- 406 (505)
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHHHHcC--------------
Confidence 11111112222333344455555666666655 335566666666665554432
Q ss_pred cccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCC
Q 008719 414 SFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKG 493 (556)
Q Consensus 414 ~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~ 493 (556)
. ...+..+...++.+++.....+..+.+..|..|++.|++++|+.+....+|+.++|.+.+ +...
T Consensus 407 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~------- 471 (505)
T TIGR00898 407 ------V-DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK------- 471 (505)
T ss_pred ------C-CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-------
Confidence 1 122334445566667777778888999999999999999999999999999999999888 3221
Q ss_pred CCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 008719 494 QPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQK 539 (556)
Q Consensus 494 ~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~~~ 539 (556)
+....+++.+++.++..+.. ++.+|++++.++|
T Consensus 472 ------------~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 472 ------------WLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred ------------HHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 01234666777766665544 3456766655443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=220.23 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=142.4
Q ss_pred cchhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008719 2 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 81 (556)
Q Consensus 2 ~~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~ 81 (556)
+-..+++.+.++++.|+++++|+|..+++++.+.+.++..+..++.|+++|| +|||++++++..+..++.+++++.
T Consensus 18 ~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~--- 93 (395)
T PRK10054 18 LLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLV--- 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHH---
Confidence 3456778889999999999999999999999999999999999999999999 899999999999888888877775
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
.+.+.+++.|.+.|.+.+...++..++..|.+++++ |++++++.+...+
T Consensus 94 -------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~ 142 (395)
T PRK10054 94 -------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLN 142 (395)
T ss_pred -------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHH
Confidence 456777778888888888888999999999998877 9999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 162 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 162 lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
+|.++||.+++++.. .+|+.+|++.++..++..+...+
T Consensus 143 lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 143 IGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred HHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 78999999888776665544433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=219.37 Aligned_cols=149 Identities=12% Similarity=0.069 Sum_probs=133.3
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 90 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 90 (556)
...++. +.+++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.++++.+
T Consensus 43 ~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~------------ 108 (434)
T PRK11663 43 NAAMPE-MLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFS------------ 108 (434)
T ss_pred HHhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHH------------
Confidence 344444 456799999999999999999999999999999999 899999999999999998888876
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 91 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
.+.+.+++.|++.|++.|...+...+++.|++|+++ |++++++.+...++|..+++.+
T Consensus 109 ----------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~ 166 (434)
T PRK11663 109 ----------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLV 166 (434)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999999999999999999999887 9999999999999999999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHH
Q 008719 171 VVYIQMEHGWGSAFGALAIAMGISN 195 (556)
Q Consensus 171 ~~~l~~~~gw~~~f~i~~~~~~~~~ 195 (556)
.+++.+.+|||++|++.++..++..
T Consensus 167 ~~~l~~~~gw~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 167 VGAIALHYGWRYGMMIAGIIAIVVG 191 (434)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHH
Confidence 9999998999999998877654443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=223.95 Aligned_cols=152 Identities=18% Similarity=0.273 Sum_probs=129.1
Q ss_pred HHHHhhCCC--------hhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008719 17 FMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 88 (556)
Q Consensus 17 yl~~~lg~s--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 88 (556)
.+..+++.+ ..+.+++.+.+.++..++.+++|+++|| +|||++++++.++..++..++.....
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~-------- 123 (481)
T TIGR00879 53 LPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF-------- 123 (481)
T ss_pred cHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 344455555 8999999999999999999999999999 89999999999999999888866421
Q ss_pred CCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 008719 89 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 168 (556)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 168 (556)
..+.+.+++.|+++|+|.+...+...++++|.+|+++ |++++++.+...++|.++++
T Consensus 124 -----------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~ 180 (481)
T TIGR00879 124 -----------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAY 180 (481)
T ss_pred -----------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHH
Confidence 0345689999999999999999999999999999888 99999999999999999999
Q ss_pred HHH---HHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 169 TLV---VYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 169 ~i~---~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
.++ +......+||++|++.++..++..+..++
T Consensus 181 ~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 181 GFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 998 66667789999999976665554444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=223.41 Aligned_cols=382 Identities=15% Similarity=0.089 Sum_probs=237.9
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
+.....+++.+++|.+..+.+|+.+.+.++..++.++.|+++|| +|||++++++.++..++.++++.+
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~----------- 87 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCGVA----------- 87 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhCc-----------
Confidence 33444566778899999999999999999999999999999999 899999999999999999888875
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
.+.+.++++|+++|++.+...+...+++.|.+|+++ |++++++++....+|..+||.
T Consensus 88 -----------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~ 144 (485)
T TIGR00711 88 -----------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPT 144 (485)
T ss_pred -----------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhc
Confidence 567889999999999999999999999999999887 999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHH-HHHHHHHHhhccccccccccccccccCCCC
Q 008719 170 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV-AQVLVAAFRKRHAAFSSSELIGLYEVPGKH 248 (556)
Q Consensus 170 i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (556)
+++++.++++||+.|++.++..++..++.++..++.+.++.++...... ................+...|
T Consensus 145 ~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~--------- 215 (485)
T TIGR00711 145 LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGW--------- 215 (485)
T ss_pred cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC---------
Confidence 9999999999999999988776666555544444321111111111110 000000000000000000000
Q ss_pred ccccCCCccccCCchhHhHH------HHhhhccCCCCCCCCcccchhhHHHHHhhhh-hhhhhHHHHHHHHHHhhcchhH
Q 008719 249 SAIKGSGKIAHTDDFRCLDK------AALELKEDVINPSPWKLCTVTQVEEVKTLVR-LVPIPACTIMLNVILTEFLTLS 321 (556)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 321 (556)
........... ......+. ....+. .+......+.... .+..+.....++......+ .+
T Consensus 216 ---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~ 281 (485)
T TIGR00711 216 ---------FDSNEILILSITGLVAIIAFVVWEL-TDDNPL---VDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLP-LY 281 (485)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHHH-cCCCCc---cCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 00000000000 00000000 000000 0000001111111 1111111111111111111 11
Q ss_pred HHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008719 322 VQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY 401 (556)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~ 401 (556)
.++..+.+ ....+.......+..++..++..++.+|+.+| +.+..|..+.+++..++.....
T Consensus 282 ~~~~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~g~~~~~~~~~~~~~~~~- 343 (485)
T TIGR00711 282 LQQVLGYT------ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTIGLILYAVGFYWRAFTFT- 343 (485)
T ss_pred HHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHHHHHHHHHHHHHHhccCC-
Confidence 11111111 11223334445556667777777766665544 3466777777777666542110
Q ss_pred HhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHH
Q 008719 402 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 481 (556)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~ 481 (556)
++.+.+..+...++.|++.+...++......+..|++.||+++|+.++.+.+|+.+|+.+.+
T Consensus 344 ------------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 405 (485)
T TIGR00711 344 ------------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALIT 405 (485)
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11355566667888999999998888888889999999999999999999999999999999
Q ss_pred Hhhh
Q 008719 482 IIKS 485 (556)
Q Consensus 482 ~i~~ 485 (556)
.+.+
T Consensus 406 ~~~~ 409 (485)
T TIGR00711 406 TILT 409 (485)
T ss_pred HHHH
Confidence 7754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-22 Score=210.96 Aligned_cols=338 Identities=11% Similarity=0.038 Sum_probs=217.7
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
+.+.++. +.+++|.|..+.++..+.+.++..++.++.|+++|| +||||.+.++..+..++..++..+
T Consensus 32 ~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~----------- 98 (406)
T PRK15402 32 IQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLA----------- 98 (406)
T ss_pred HhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3344443 557899999999999999999999999999999999 899999999999999888887775
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
.+.+.+++.|+++|++.+...+...+.+.|.+|+++ |.+..++.+....+|..+||.
T Consensus 99 -----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 155 (406)
T PRK15402 99 -----------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPL 155 (406)
T ss_pred -----------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999988999999999998877 889999888888899999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCc
Q 008719 170 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHS 249 (556)
Q Consensus 170 i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (556)
+++++.++.+|+++|++.++..+++.+..+...|+.+.+.+++.+..+
T Consensus 156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 203 (406)
T PRK15402 156 VGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKE-------------------------------- 203 (406)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHH--------------------------------
Confidence 999998888999999988877666555444333321110000000000
Q ss_pred cccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhcc
Q 008719 250 AIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMN 329 (556)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (556)
..+... ...++++......................+. +..+..+.+
T Consensus 204 ---------------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~g~~ 249 (406)
T PRK15402 204 ---------------LGRDYK------------------LVLKNRRFVAGALALGLVSLPLLAWIALSPV-ILISGEQLS 249 (406)
T ss_pred ---------------HHHHHH------------------HHHcCcHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhCCC
Confidence 000000 0000011111000000000001111111111 111111111
Q ss_pred cccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008719 330 THMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISH 409 (556)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (556)
.. ..+.......+..++..++.+++.||+.+ ++.+.++.++.+++..++......
T Consensus 250 ~~------~~g~~~~~~~~~~~~g~~~~g~l~~r~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~-------- 304 (406)
T PRK15402 250 SY------EYGLLQVPVFGALIAGNLTLARLTSRRPL-----------RSLIRMGLWPMVAGLLLAALATVI-------- 304 (406)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 11 11111112223334444555555544433 344667777777776666554310
Q ss_pred CccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 410 GYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 410 ~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
. + .+.+++++..++.+++++...+..+...... +++.||+..++.++.+.+|..+|+.+.+.+.+
T Consensus 305 --------~-~-~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 305 --------S-S-HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred --------c-c-ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 1 2456677888899999998888877766444 45899999999999999999999999998765
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=228.84 Aligned_cols=365 Identities=32% Similarity=0.455 Sum_probs=242.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhccc
Q 008719 58 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 137 (556)
Q Consensus 58 r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 137 (556)
.|+++++.+++.+|.+++++++..+... .+.+...++++++++++|.|+++|++.++++||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~-------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLP-------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhh-------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 4789999999999999988886643321 125668899999999999999999999999999
Q ss_pred CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccccc-CCCCCchh
Q 008719 138 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT 216 (556)
Q Consensus 138 ~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 216 (556)
+++++++ +|.++++++|++.|+|+.+++.+.+++++++||.+.|+++++..+++++.++..+++++.+ ++.+.+..
T Consensus 62 ~~~~~~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~ 138 (372)
T PF00854_consen 62 YDEDDDS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT 138 (372)
T ss_dssp SSTTTTT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred hcccchh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence 9987422 3999999999999999999999999999999999999999999999999999998888776 56666665
Q ss_pred H-HHHHHHHHHhhccccccccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCc-ccchhhHHHH
Q 008719 217 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV 294 (556)
Q Consensus 217 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 294 (556)
. ...++....+++....|....+ +....... ......+. .............. ..|. .+..+++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 207 (372)
T PF00854_consen 139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQY----SERSIFGI--IVFIRAAVIFFPEI----FFWALFCQVQRVEEL 207 (372)
T ss_dssp --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHH----CCCCCCCC--CCHHHHHHHHCCCH----HHHTTTSSTTTHHHC
T ss_pred hhHHHHHHHHHHHhhcccccchHH-HHHhhhhh----hhhhhhhh--hhhccchhhhhhhh----hhcccCCccceeeee
Confidence 5 4455555555555444333322 11110000 00000000 00011001110000 0010 0233455666
Q ss_pred HhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhccccccc-ccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCC
Q 008719 295 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPR 373 (556)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~ 373 (556)
+.+.+.++.+.+.+.+..++.+..+....+...+|+.+.+ +.+++.+++.++++.++++.|+.+++.+|+.|+ ++
T Consensus 208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~----~~ 283 (372)
T PF00854_consen 208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR----GI 283 (372)
T ss_dssp CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh----cc
Confidence 7777777777778888888888888888888787777777 899999999999999999999999999999883 23
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 008719 374 GASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA 453 (556)
Q Consensus 374 ~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~ 453 (556)
..+...++.+|++++.+++++....+..|.....+++. .+.+|.++.+++.+++|.+..+...+...|.+
T Consensus 284 ~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~~----------~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a 353 (372)
T PF00854_consen 284 QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCGK----------VSPWWQVPMYIFWLIPEYFLSGTGESAAYEFA 353 (372)
T ss_dssp ----HHHHHHH-HHHHHHHHTTTHHHH---HH----TT------------THHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCC----------CChhhHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 37888999999999999999988887765544444442 34467779999999999999999999777777
Q ss_pred CchhHHHHHHHHHHHH
Q 008719 454 PDAMKSIGSAYAALAG 469 (556)
Q Consensus 454 P~~~rg~~~gl~~~~~ 469 (556)
|++..+.++|+++...
T Consensus 354 ~~~~p~~m~~~~~~~~ 369 (372)
T PF00854_consen 354 PSRAPSSMMGIWFALS 369 (372)
T ss_dssp TTT-SSSSTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHh
Confidence 7777777777776543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=214.02 Aligned_cols=368 Identities=12% Similarity=0.056 Sum_probs=236.7
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhh-----HhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 78 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~-----~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~ 78 (556)
.++++...+.++.|++ ++|.+..+ .+++.+.+.++..++.++.|+++|| +|||+.+..+.++..++..++..+
T Consensus 27 ~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~ 104 (408)
T PRK09874 27 GAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALGMGIVMVLMGLA 104 (408)
T ss_pred HHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888875 58988665 4888999999999999999999999 899999999999888888777764
Q ss_pred hhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHH
Q 008719 79 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 158 (556)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (556)
.+.+.+++.|++.|++.+ ..+...+++.+.+++++ |+++.++...
T Consensus 105 ----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 149 (408)
T PRK09874 105 ----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLST 149 (408)
T ss_pred ----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHH
Confidence 567889999999999865 45777888999998877 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccccc
Q 008719 159 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSEL 238 (556)
Q Consensus 159 ~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
..++|.+++|.+++.+.+.++|++.|++.++..++..+..+...++.+...++++. .
T Consensus 150 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------------- 206 (408)
T PRK09874 150 GGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-L---------------------- 206 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-h----------------------
Confidence 99999999999999999889999999998877665555444433321110000000 0
Q ss_pred ccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcc
Q 008719 239 IGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFL 318 (556)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (556)
+..+.. . . + ++.+..... ...............
T Consensus 207 -------------------------~~~~~~--~--~-------~--------~~~~~~~~~---~~~~~~~~~~~~~~~ 239 (408)
T PRK09874 207 -------------------------HMREVV--T--S-------L--------KNPKLVLSL---FVTTLIIQVATGSIA 239 (408)
T ss_pred -------------------------HHHHHH--H--h-------C--------cCCchHHHH---HHHHHHHHHHHHHHH
Confidence 000000 0 0 0 000000000 010111111111111
Q ss_pred hhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008719 319 TLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 398 (556)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~ 398 (556)
..+..+...............+.+..+..+..++..+...++.||+.+| +.+..+..+.+++++.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~ 308 (408)
T PRK09874 240 PILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----------KILITALIFSVLLLIPMSFV 308 (408)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHHHHHHh
Confidence 1111111110000000000111122223344455556666666665544 33455555555444433322
Q ss_pred HHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHH
Q 008719 399 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 478 (556)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~ 478 (556)
. +.+.+.+..++.|++.+...|...++..+..|++.||+.+++.+....+|..+|+.
T Consensus 309 ~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~ 365 (408)
T PRK09874 309 Q-----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPL 365 (408)
T ss_pred c-----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHH
Confidence 1 34445566778899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 479 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 530 (556)
Q Consensus 479 l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~ 530 (556)
+.+.+.+..+ +...|++.+++.+++.+..+...+
T Consensus 366 ~~G~l~~~~g------------------~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 366 MGAAISANYG------------------FRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HHHHHHhhcc------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998765322 346788888888877766554433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-22 Score=208.43 Aligned_cols=162 Identities=11% Similarity=0.052 Sum_probs=132.3
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHH-HHHHHHHHHHHHHHhhhcc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~-~~~~~~i~~~l~~~~~~~~ 82 (556)
.++.....+.++.|+++++|.|..+.+++.+.+.+...+..++.|+++|| +||||.+++ +..+..++..+++.+
T Consensus 10 ~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~---- 84 (375)
T TIGR00899 10 GIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAWN---- 84 (375)
T ss_pred HHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHhc----
Confidence 45667778889999999999999999999999999999999999999999 899887554 555555666666664
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhH--HHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF--FNFFYLSV 160 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~ 160 (556)
.+++.+++.|+++|.+.+...|...++..|..++++ |.+. .+..+...
T Consensus 85 ------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (375)
T TIGR00899 85 ------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQI 134 (375)
T ss_pred ------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHH
Confidence 466778888999988888888888888888876554 5543 57777788
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 161 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
++|.++||.+++++.+.++||++|++.++..++..+..+.
T Consensus 135 ~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 135 SLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred hHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998899999999988876655554444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=210.35 Aligned_cols=352 Identities=11% Similarity=0.013 Sum_probs=227.5
Q ss_pred HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 008719 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 91 (556)
Q Consensus 12 ~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (556)
..+.+++++++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++.++..+..++.++++++
T Consensus 23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~------------- 88 (377)
T TIGR00890 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIA------------- 88 (377)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHH-------------
Confidence 345678888999999999999999999999999999999999 899999999999999999888886
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008719 92 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 171 (556)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~ 171 (556)
.+.+.++++|++.|++.+...++......+++| ++ |+++.++.....++|..+++.+.
T Consensus 89 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~ 146 (377)
T TIGR00890 89 ---------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLI 146 (377)
T ss_pred ---------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHH
Confidence 678899999999999999888888888888886 44 89999999999999998777677
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccc
Q 008719 172 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAI 251 (556)
Q Consensus 172 ~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (556)
+.+.+..|||+.|++.++..++..+..+...++.++++++++. +
T Consensus 147 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~--- 190 (377)
T TIGR00890 147 TSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI---------------------------------E--- 190 (377)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc---------------------------------c---
Confidence 7777778999999998887666555444333221110000000 0
Q ss_pred cCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhcccc
Q 008719 252 KGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 331 (556)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (556)
. ...+.+.. +..++ +...... ................+..+... .+
T Consensus 191 -----~-~~~~~~~~----------------------~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~ 236 (377)
T TIGR00890 191 -----V-SVKDYTVW----------------------EMLRT-PQFWVLY---LSFFLNAVSGLLLIGLYKPYGQS--LG 236 (377)
T ss_pred -----c-chhhhhHH----------------------HHHcC-ccHHHHH---HHHHHHhHHHHHHHHHHHHHHHH--cC
Confidence 0 00000000 00000 0110000 00011111111111111111111 11
Q ss_pred cccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCc
Q 008719 332 MGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGY 411 (556)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (556)
.. ....+.+.....+..++..++..++.||+.||. .+..+.++.+++...+.....
T Consensus 237 ~~--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~~~----------- 292 (377)
T TIGR00890 237 LS--DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-----------TMSIVFGISAVGMAAMLFIPM----------- 292 (377)
T ss_pred CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHHHHHHHccc-----------
Confidence 10 111223344455566667777777777776552 245565666666554443320
Q ss_pred cccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCC
Q 008719 412 EFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPK 491 (556)
Q Consensus 412 ~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~ 491 (556)
......+...++.+++.+...+...++..|..|++.|++..|+.+....+|..+++.+.+.+.+..|
T Consensus 293 ----------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--- 359 (377)
T TIGR00890 293 ----------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG--- 359 (377)
T ss_pred ----------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 1222233344556666666666777888899999999999999999999999999999998766333
Q ss_pred CCCCCcccCCCccchhHHHHHHHHHHHHHH
Q 008719 492 KGQPNWLAQNINTGRFDYLYWLLAVLSVIN 521 (556)
Q Consensus 492 ~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~ 521 (556)
| ...|++.+++.+++
T Consensus 360 -----~----------~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 360 -----F----------EYTFIVTGAFALTS 374 (377)
T ss_pred -----h----------hhHHHHHHHHHHHh
Confidence 2 45667666666554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-22 Score=204.29 Aligned_cols=352 Identities=14% Similarity=0.109 Sum_probs=247.6
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
+.+-+.+++|.|..++|++++.|..+..++.|+...+.|| +.||++++..+.++.++.++++++
T Consensus 35 LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l~alA--------------- 98 (394)
T COG2814 35 LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALA--------------- 98 (394)
T ss_pred chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 3356778999999999999999999999999999999999 899999999999999999999998
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
.+++.+.++|++.|+..|.+.+...+..++..|+++ |+++.++...+..++.++|..++.+
T Consensus 99 -------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ 159 (394)
T COG2814 99 -------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTF 159 (394)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHH
Confidence 689999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHhcc-cccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCcccc
Q 008719 174 IQMEHGWGSAFGALAIAMGISNMLFFIGTP-LYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIK 252 (556)
Q Consensus 174 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (556)
+.+.+|||.+|++.++..+++++..+...| +...+ +.+.+..+..++
T Consensus 160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~-~~~~~~~~~~~~------------------------------- 207 (394)
T COG2814 160 LGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISG-SLPGPLRTLLRL------------------------------- 207 (394)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCC-CCCcchhHHHHH-------------------------------
Confidence 999999999999999988888777777666 11100 000100000000
Q ss_pred CCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhccccc
Q 008719 253 GSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 332 (556)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (556)
.++.+.........+.....+..|++....+.+. .+++..
T Consensus 208 --------------------------------------l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-~g~s~~- 247 (394)
T COG2814 208 --------------------------------------LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV-AGFSVS- 247 (394)
T ss_pred --------------------------------------hcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-cCCCHh-
Confidence 0001111112222233333444444443333321 122211
Q ss_pred ccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcc
Q 008719 333 GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE 412 (556)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (556)
..+++-....+..++...+.+++.||..+ +.+.....++++.++.+.+..
T Consensus 248 -----~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~------------~~l~~~~~l~a~~~l~l~~~~------------- 297 (394)
T COG2814 248 -----AVSLVLLAFGIAGFIGNLLGGRLADRGPR------------RALIAALLLLALALLALTFTG------------- 297 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhhhccccch------------hHHHHHHHHHHHHHHHHHHhc-------------
Confidence 22334445556666666666666665222 235555667777776665553
Q ss_pred ccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCC
Q 008719 413 FSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK 492 (556)
Q Consensus 413 ~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~ 492 (556)
.+.+..+...++.+++.....+..+....+.. ++.++.+++++....++|..+|..+.|.+.+..|
T Consensus 298 ---------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g---- 363 (394)
T COG2814 298 ---------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALG---- 363 (394)
T ss_pred ---------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 13344444455555555544444455554423 5788999999999999999999999999887433
Q ss_pred CCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 493 GQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 530 (556)
Q Consensus 493 ~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~ 530 (556)
+....|+.+.+.+++++..+...+
T Consensus 364 --------------~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 364 --------------YAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678788888777766555444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=219.19 Aligned_cols=372 Identities=12% Similarity=0.058 Sum_probs=224.0
Q ss_pred HHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccc
Q 008719 16 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 95 (556)
Q Consensus 16 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (556)
..+.+++|.+.++.+++.+.+.++..++.+++|+++|| +|||++++.+.++..+++++++.+
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~----------------- 104 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFS----------------- 104 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHh-----------------
Confidence 45567899999999999999999999999999999999 899999999999999888888775
Q ss_pred cccCCCCCccchhHHHHHH-HHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 96 QLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 174 (556)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l 174 (556)
.+.+.+++ .|++.|++.+...+...+++.++++ ++ |+++.++.+...++|..++|.+++++
T Consensus 105 -----------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l 166 (455)
T TIGR00892 105 -----------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYL 166 (455)
T ss_pred -----------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45555554 5789999999876777788888885 55 99999999999999999999999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCC
Q 008719 175 QMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 254 (556)
Q Consensus 175 ~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 254 (556)
.+.+|||++|++.++..+++.+..++.+++.+..+..+.+ ..+. . ......
T Consensus 167 ~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------------~~~~----~-~~~~~~------ 217 (455)
T TIGR00892 167 FESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSK------------------SKEG----L-PPDGST------ 217 (455)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccc------------------cccc----C-CCCCcc------
Confidence 9999999999998887665554444433321110000000 0000 0 000000
Q ss_pred CccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhccccccc
Q 008719 255 GKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK 334 (556)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (556)
++.... ...+. ..++ ... +....+.+... ..........+....+.+..+.. +.++.
T Consensus 218 ~~~~~~---~~~~~-----------~~~~--~~~-~~~~~~~~~~~---~~~~~l~~~~~~~~~~~l~~~~~--~~g~s- 274 (455)
T TIGR00892 218 KKLSKK---STAEK-----------INRF--LDF-SLFTHRGFLVY---LSGNVIMFLGFFAPIIFLVPYAK--DKGVD- 274 (455)
T ss_pred cccccc---chhhh-----------hhhh--cch-HHhcCchHHHH---HHHHHHHHHHccchHHHHHHHHH--HcCCC-
Confidence 000000 00000 0000 000 00001111111 11111111111111111221111 11110
Q ss_pred ccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccc
Q 008719 335 LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFS 414 (556)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (556)
....+.+.....+..++..++..++.++...| ......+..+.++.++++++....
T Consensus 275 -~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~~~~~~~~~~~~~~l~~ll~~~~---------------- 330 (455)
T TIGR00892 275 -EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR-------PHVQYLFSFALLFNGLTHLLCALA---------------- 330 (455)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------HHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 11122233334455555666666655532111 111122333334334443333222
Q ss_pred ccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCC
Q 008719 415 FLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQ 494 (556)
Q Consensus 415 ~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~ 494 (556)
.+.+.+++..++.|++.+...+...+++.+.+|++.+++++|+.++...+|..+|+.+.+.+.+..+
T Consensus 331 -------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g------ 397 (455)
T TIGR00892 331 -------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK------ 397 (455)
T ss_pred -------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC------
Confidence 1455566678888999998899999999999999999999999999999999999999998766332
Q ss_pred CCcccCCCccchhHHHHHHHHHHHHHHHH
Q 008719 495 PNWLAQNINTGRFDYLYWLLAVLSVINFC 523 (556)
Q Consensus 495 ~~w~~~~~~~~~~~~~f~~~~~~~~v~~i 523 (556)
++...|++.+++.+++.+
T Consensus 398 -----------~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 398 -----------NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred -----------CcchHHHHhhHHHHHHHH
Confidence 123456666666665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-22 Score=212.09 Aligned_cols=156 Identities=16% Similarity=0.094 Sum_probs=137.9
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 92 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (556)
...+.+++++|++..+.+++.+++.++..+++++.|+++|| +|||+++..+.+++.++..+++++
T Consensus 29 ~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~-------------- 93 (412)
T TIGR02332 29 FAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWGIASTATMFA-------------- 93 (412)
T ss_pred HHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 34558899999999999999999999999999999999999 899999999999999999998886
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008719 93 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 172 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~ 172 (556)
.+.+.+++.|+++|++.|...|+..+++.|++|+++ |++..+++....++|.++++.+++
T Consensus 94 --------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 94 --------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred --------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999888 999999999999999999999999
Q ss_pred Hhhc------ccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 173 YIQM------EHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 173 ~l~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
++.. ..|||++|++.++..++..+..++..+
T Consensus 154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~ 190 (412)
T TIGR02332 154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD 190 (412)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 8864 369999999987776554444444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=211.31 Aligned_cols=149 Identities=13% Similarity=0.180 Sum_probs=132.5
Q ss_pred HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 008719 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 91 (556)
Q Consensus 12 ~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (556)
......+++++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.++++.+
T Consensus 32 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~------------- 97 (405)
T TIGR00891 32 ALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIVLFSAGTLACGFA------------- 97 (405)
T ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 334456778999999999999999999999999999999999 899999999999999998888775
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008719 92 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 171 (556)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~ 171 (556)
.+++.+++.|++.|++.+...+...+++.|.+|+++ |+++.++.....++|.++++.++
T Consensus 98 ---------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~ 156 (405)
T TIGR00891 98 ---------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVY 156 (405)
T ss_pred ---------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999887 99999999999999999999999
Q ss_pred HHhhcccc--hhHHHHHHHHHHHHHH
Q 008719 172 VYIQMEHG--WGSAFGALAIAMGISN 195 (556)
Q Consensus 172 ~~l~~~~g--w~~~f~i~~~~~~~~~ 195 (556)
+.+.+..+ ||+.|++.++..++..
T Consensus 157 ~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 157 SLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 99887766 9999988665544443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-22 Score=210.66 Aligned_cols=143 Identities=18% Similarity=0.222 Sum_probs=131.3
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 92 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (556)
....++++++|.|+.+.+++.+.+.++..++++++|+++|| +|||+++.++.++..++.++++++
T Consensus 39 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~-------------- 103 (426)
T PRK12307 39 YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYSVGTGLSGLA-------------- 103 (426)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHH--------------
Confidence 34456778999999999999999999999999999999999 899999999999999999888886
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008719 93 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 172 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~ 172 (556)
.+.+.++++|+++|++.|...++..+++.|.+|+++ |+++.++...+..+|.++++.+.+
T Consensus 104 --------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~ 163 (426)
T PRK12307 104 --------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMP 163 (426)
T ss_pred --------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHH
Confidence 577899999999999999999999999999999888 999999999999999999999999
Q ss_pred HhhcccchhHHHHHHHHH
Q 008719 173 YIQMEHGWGSAFGALAIA 190 (556)
Q Consensus 173 ~l~~~~gw~~~f~i~~~~ 190 (556)
.+.+.++||++|++....
T Consensus 164 ~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 164 SFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHcccCCHHHHHHHHHHH
Confidence 998889999999886543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=211.20 Aligned_cols=163 Identities=20% Similarity=0.260 Sum_probs=141.4
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
++...+.+.++.++.+++|.|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++.+++..++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~------ 82 (352)
T PF07690_consen 10 FGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAFA------ 82 (352)
T ss_dssp HHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhhh------
Confidence 4444555566658889999999999999999999999999999999999 899999999999999996666654
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.+.+.+++.|++.|++.+...++..+++.|.+|+++ |++.+++.+...++|.
T Consensus 83 ----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~ 134 (352)
T PF07690_consen 83 ----------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGS 134 (352)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHH
T ss_pred ----------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhh
Confidence 245589999999999999999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 202 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 202 (556)
++||.+++++.+.++||++|++.++..+++.++.....
T Consensus 135 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 135 ILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp HHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred hcccchhhhhhhccccccccccccchhhhhhhhHhhhh
Confidence 99999999999889999999999988777766433333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-23 Score=223.59 Aligned_cols=403 Identities=15% Similarity=0.123 Sum_probs=258.0
Q ss_pred hHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccch
Q 008719 28 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 107 (556)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (556)
+.+|+.+.+.++..++.+++|+++|+ +|||++++++.+++.+|.++++.+ .
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a----------------------------~ 140 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALA----------------------------P 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence 45899999999999999999999999 899999999999999999999998 6
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHH
Q 008719 108 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA 186 (556)
Q Consensus 108 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~-~gw~~~f~i 186 (556)
+..+++++|++.|+|.|+....++.+++|..|++. |+...+..+...++|..++..++....+. ++||.++.+
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 88999999999999999999999999999999988 99999999999999999996555555443 589999888
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCCCcccc--CCch-
Q 008719 187 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH--TDDF- 263 (556)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~- 263 (556)
..+..++..+.+++ .||+|+| +.++++.+++++....+.. ..+.
T Consensus 215 ~~i~~~~~~~~~~~--------------------------------~pesp~~-L~~~g~~~~a~~~l~~l~g~~~~~~~ 261 (513)
T KOG0254|consen 215 ALIPAVILALGMLF--------------------------------LPESPRW-LIEKGRLEEAKRSLKRLRGLSPEDVE 261 (513)
T ss_pred HHHHHHHHHHHHHh--------------------------------CCCChHH-HHHcCChHHHHHHHHHHhCCCCcchH
Confidence 87776655555333 5677788 7777777766655444433 1111
Q ss_pred hHhHHHHhhhccCC---CCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhcccccccccccCC
Q 008719 264 RCLDKAALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT 340 (556)
Q Consensus 264 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (556)
...+....+...+. .....|+.+.. ....|+....+.+..++......... +|..+.. ... +...+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~---~Y~~~if--~~~--g~~~~~~ 332 (513)
T KOG0254|consen 262 VELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVF---YYSTTIF--KSA--GLKSDTF 332 (513)
T ss_pred HHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEE---eehHHHH--Hhc--CCCCchH
Confidence 11111111110000 00000111111 01122222111111111111111111 1111111 110 0111112
Q ss_pred cccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCC
Q 008719 341 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420 (556)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (556)
....+......+...+...+.|+++|| ..+..|...+.+++++++.......+..+... .
T Consensus 333 ~~~~~~~~v~~~~t~~~~~lvd~~gRr-----------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~---------~ 392 (513)
T KOG0254|consen 333 LASIILGVVNFLGTLVATYLVDRFGRR-----------KLLLFGAAGMSICLVILAVVGVFALYYPNSSK---------G 392 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHhHHHHHHHHHHHHHHHHHhccCCCccc---------c
Confidence 222233333344444445777777776 34778888888888888877543221110010 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccC
Q 008719 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 500 (556)
Q Consensus 421 ~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~ 500 (556)
..+..++...++.........|..+.+..|..|.+.|+.+.++....+++.+++-......+....+
T Consensus 393 -~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~------------ 459 (513)
T KOG0254|consen 393 -AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG------------ 459 (513)
T ss_pred -hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc------------
Confidence 3444444455555555556677888899999999999999999999999988888777665543100
Q ss_pred CCccchhHHHHHHHHHHHHHHHH-HHHHHhhcccccccccCCCchhh
Q 008719 501 NINTGRFDYLYWLLAVLSVINFC-AFLYSAYRYKYRSEQKHGNDYEV 546 (556)
Q Consensus 501 ~~~~~~~~~~f~~~~~~~~v~~i-~~~~~~~~~~~~~~~~~~~~~~~ 546 (556)
....|+..+..+.+... +++++.+|+|++++||.++.++.
T Consensus 460 ------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 460 ------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred ------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 01345556666666666 78888999999998877765554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=209.12 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=115.5
Q ss_pred HHHHHHHhh--CCChhhHhHHH-----HHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 14 MVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 14 ~~~yl~~~l--g~s~~~~~~~~-----~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
.+.++.+++ +.++. .+++. ++..++..++.++.|+++|| +|||+++.++.++++++.++++++.+....
T Consensus 45 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~-- 120 (438)
T PRK09952 45 AALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLMLTVWMMGIATALIGLLPSFSTI-- 120 (438)
T ss_pred HHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcCCcHHHH--
Confidence 344555555 66665 45543 23445567888889999999 899999999999999999999886210000
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
..+....+++.|+++|++.|+..|+...++.|++|+++ |++..+....+..+|.++
T Consensus 121 ------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 121 ------------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred ------------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHH
Confidence 00112368889999999999999999999999999988 999999998888999988
Q ss_pred HHHHHHHhh--------cccchhHHHHHHHHHHH
Q 008719 167 AFTLVVYIQ--------MEHGWGSAFGALAIAMG 192 (556)
Q Consensus 167 g~~i~~~l~--------~~~gw~~~f~i~~~~~~ 192 (556)
+..+..++. .++|||++|++.++..+
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 887776654 25799999998776543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-22 Score=202.64 Aligned_cols=337 Identities=20% Similarity=0.226 Sum_probs=250.0
Q ss_pred chhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008719 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 3 ~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~ 82 (556)
..++++...+..+.|.+ ++|.+..+.+++.+...++..++.++.|+++|| +|||+.+.++..+..++..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~~~~---- 84 (352)
T cd06174 11 SGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAFA---- 84 (352)
T ss_pred HHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHh----
Confidence 44566667777777764 679999999999999999999999999999999 899999999999999998888875
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 162 (556)
.+.+.+++.|++.|++.+...+...++..|.+|+++ |++.+++.+...++
T Consensus 85 ------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (352)
T cd06174 85 ------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGL 134 (352)
T ss_pred ------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHH
Confidence 467889999999999999999999999999999887 99999999999999
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccccccccc
Q 008719 163 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLY 242 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (556)
|..++|.+++.+.+..+|++.|++.++...+..+......+
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 175 (352)
T cd06174 135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR--------------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 99999999999999889999999988776655554333210
Q ss_pred ccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhh-hhhhHHHHHHHHHHhhcchhH
Q 008719 243 EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL-VPIPACTIMLNVILTEFLTLS 321 (556)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 321 (556)
..... ................. ..+
T Consensus 176 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~ 201 (352)
T cd06174 176 -----------------------------------------------------LLLLLALAFFLLSFGYYGLLTYL-PLY 201 (352)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHhHHHHHHHHH-HHH
Confidence 00000 00001111111111111 111
Q ss_pred HHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008719 322 VQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY 401 (556)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~ 401 (556)
..+..+.+ ....+.+.....+...+..++..++.+|..+|. ..+..+..+..++.+......
T Consensus 202 ~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~-- 263 (352)
T cd06174 202 LQEVLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR----------LLLLIGLLLAALGLLLLALAP-- 263 (352)
T ss_pred HHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHhc--
Confidence 11111111 112234444556666777777777766665542 046677777777766665442
Q ss_pred HhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHH
Q 008719 402 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 481 (556)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~ 481 (556)
+.+...+..++.+++.+...+...++..+..|++.|++.+|+.+..+.+|..+++.+.+
T Consensus 264 ---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g 322 (352)
T cd06174 264 ---------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG 322 (352)
T ss_pred ---------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778899999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHH
Q 008719 482 IIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAF 525 (556)
Q Consensus 482 ~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~ 525 (556)
.+.+..+ | ...|++.+++.+++.+..
T Consensus 323 ~l~~~~~--------~----------~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 323 LLLDTGG--------Y----------GGVFLILAALALLAALLL 348 (352)
T ss_pred HHhcccC--------c----------chHHHHHHHHHHHHHHHh
Confidence 8765211 2 356777777777766544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=215.00 Aligned_cols=157 Identities=15% Similarity=0.059 Sum_probs=131.1
Q ss_pred HHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccc
Q 008719 15 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 94 (556)
Q Consensus 15 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 94 (556)
.+.+.+++|++..+.|++.+.+.+++.++.+++|+++|| +|||+++..+.++.+++.++.+.....
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~------------- 117 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLGS------------- 117 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 456778999999999999999999999999999999999 899999999988888777766653110
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 95 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 174 (556)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l 174 (556)
...+.+.+++.|+++|++.+...|+..++++|++|+++ |+++++++....++|.++++.+..++
T Consensus 118 ----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 118 ----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred ----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHH
Confidence 01477899999999999999999999999999999998 99999999999999999999888777
Q ss_pred hccc---chhHHHHHHHHHHHHHHHHHHHh
Q 008719 175 QMEH---GWGSAFGALAIAMGISNMLFFIG 201 (556)
Q Consensus 175 ~~~~---gw~~~f~i~~~~~~~~~~~~~~~ 201 (556)
.... +|+..|.+.++..++..+..++.
T Consensus 182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 182 ANYFFDGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred HHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 6543 59998888777655444443433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-22 Score=214.30 Aligned_cols=149 Identities=14% Similarity=0.131 Sum_probs=131.1
Q ss_pred hhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCC
Q 008719 21 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 100 (556)
Q Consensus 21 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (556)
++|++..+.|++.+.+.+++.++++++|+++|| +|||+++.++.++..++.+++..+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 688999999999999999999999999999999 89999999999998888877655421
Q ss_pred CCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc-c
Q 008719 101 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G 179 (556)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~-g 179 (556)
.+...+++.|+++|++.+...|....++.|++|+++ |+++.++.....++|.++++.+++++.+.+ |
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 345678999999999999999999999999999988 999999999999999999999999998884 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q 008719 180 WGSAFGALAIAMGISNMLFFIGT 202 (556)
Q Consensus 180 w~~~f~i~~~~~~~~~~~~~~~~ 202 (556)
||++|++.++..++..+..+...
T Consensus 197 w~~~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred CCeehhhhhHHHHHHHHHHHHHh
Confidence 99999998887665554444433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=203.45 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=135.0
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 90 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 90 (556)
...++. +.+++|+++.+.++..+.+.++..++.++.|+++|| +|||++++.+.++.+++.++++.+
T Consensus 40 ~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 40 VSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 334444 567899999999999999999999999999999999 899999999999999998888775
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 91 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
.+.+.+++.|+++|++.|...|...+++.|++|+++ |+++.++.....++|.++||.+
T Consensus 106 ----------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l 163 (394)
T PRK10213 106 ----------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPL 163 (394)
T ss_pred ----------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999887 9999999999999999999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHH
Q 008719 171 VVYIQMEHGWGSAFGALAIAMGISNM 196 (556)
Q Consensus 171 ~~~l~~~~gw~~~f~i~~~~~~~~~~ 196 (556)
++++.+++|||+.|++.++..+++.+
T Consensus 164 ~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 164 GSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998766554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=200.64 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=136.0
Q ss_pred HHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccc
Q 008719 16 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 95 (556)
Q Consensus 16 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (556)
+++.+++|.|+.+.+++.+.+.++..++.+++|+++|| +|||+++..+.++..++.+++..+
T Consensus 29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~----------------- 90 (385)
T TIGR00710 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALS----------------- 90 (385)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 45677899999999999999999999999999999999 899999999999999988888775
Q ss_pred cccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 96 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 175 (556)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~ 175 (556)
.+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..+|+.+++++.
T Consensus 91 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 91 -----------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred -----------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999877 999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhc
Q 008719 176 MEHGWGSAFGALAIAMGISNMLFFIGT 202 (556)
Q Consensus 176 ~~~gw~~~f~i~~~~~~~~~~~~~~~~ 202 (556)
++++|+++|++.++..++..+..+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (385)
T TIGR00710 154 VWLSWHAIFAFLSLAGILLSALIFFIL 180 (385)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 989999999988877665555444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-21 Score=205.68 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=122.2
Q ss_pred hHHhHHHHHHHhhC---CChhhHhHHHHHH---HHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 10 LSVNMVTFMFYVMH---KSFADSSNAVNNF---LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 10 ~~~~~~~yl~~~lg---~s~~~~~~~~~~~---~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
+...+.+++.++++ .+..+.+++.+.+ .++..++++++|+++|| +||||++.++.+++++++++++++.....
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (432)
T PRK10406 40 VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGSLVIACLPGYET 118 (432)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 35566678888884 5555544444444 44445999999999999 89999999999999999999888621000
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
. ...+...+++.|+++|++.|+..|...++++|++|+++ |++..++.+...+.|
T Consensus 119 ~--------------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G 172 (432)
T PRK10406 119 I--------------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGG 172 (432)
T ss_pred H--------------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHH
Confidence 0 00234578999999999999999999999999999988 999999999888999
Q ss_pred HHHHHHHHHHhh--------cccchhHHHHHHHHHHHHH
Q 008719 164 AIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGIS 194 (556)
Q Consensus 164 ~~~g~~i~~~l~--------~~~gw~~~f~i~~~~~~~~ 194 (556)
.++++.+...+. ..+|||++|++.++..++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 173 QLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 988887765544 2579999999877765443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=203.72 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=136.9
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 87 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (556)
+...+.++ .+++++|.+..+.+++.+.+.++..++++++|+++|| +|||+++.++..+..++.++++.+
T Consensus 20 ~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~l~~~~--------- 88 (382)
T PRK10091 20 FGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGNAMFTLS--------- 88 (382)
T ss_pred HHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHh---------
Confidence 34444454 4567899999999999999999999999999999999 899999999999999999988886
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
.+.+.+++.|+++|++.+...+...+++.|.+++++ |++++++......+|..+|
T Consensus 89 -------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g 143 (382)
T PRK10091 89 -------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLG 143 (382)
T ss_pred -------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHh
Confidence 578899999999999999988888899999988877 8999999999999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008719 168 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 199 (556)
Q Consensus 168 ~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 199 (556)
|.+++++.+.++||++|++.++..++..+..+
T Consensus 144 ~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 144 IPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred ccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999889999999998876555444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=208.16 Aligned_cols=159 Identities=11% Similarity=0.073 Sum_probs=127.9
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 92 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (556)
...+|+.++ |++..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.+++++...
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~------------ 115 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPW------------ 115 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhc------------
Confidence 344578777 9999999999999999999999999999999 89999999999999988887776411
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH-HHHHHHH
Q 008719 93 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLV 171 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~-~~g~~i~ 171 (556)
...+.+.+++.|++.|++.|...|.....+.+++|+++ |++++++++...++|. ..+|.++
T Consensus 116 ------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 116 ------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred ------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 00256778899999999999999988889999999887 9999999999999986 4566554
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 172 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 172 ~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
..+....+||++|++.++..++..++.++..+
T Consensus 178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 178 LGMAWFNDWHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444458999999988765554444433333
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-21 Score=202.73 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=132.5
Q ss_pred HHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccc
Q 008719 18 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 97 (556)
Q Consensus 18 l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (556)
+.+++|.+..+.++.++.+.++..++++++|+++|| +|||++++.+..++.++.++++.+
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a------------------- 101 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFT------------------- 101 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHc-------------------
Confidence 567899999999999999999999999999999999 899999999999999999888876
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008719 98 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 177 (556)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 177 (556)
.+.+.++++|+++|++.+...+...+++.|.+++++ |.+.+++.....++|..+||.+++.+.++
T Consensus 102 ---------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~ 166 (413)
T PRK15403 102 ---------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHF 166 (413)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577889999999999998777777788999999887 99999999999999999999999999988
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 008719 178 HGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 178 ~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
.|||+.|++.++..+++.+..+.
T Consensus 167 ~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 167 VHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988876666554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=199.12 Aligned_cols=140 Identities=14% Similarity=0.043 Sum_probs=122.7
Q ss_pred HHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 008719 17 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 96 (556)
Q Consensus 17 yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (556)
.+.+++|.++.+.+++.+.+.+...+..+++|+++|| +||||+++++..+++++.+++..+
T Consensus 28 ~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~~~~~~~------------------ 88 (393)
T PRK11195 28 ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGCLLMLFG------------------ 88 (393)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHHHHHHHH------------------
Confidence 3457899999999999999999999999999999999 899999999999999888877664
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008719 97 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 176 (556)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~ 176 (556)
.+ .++.|+++|++.+...|+..+++.|.+|+++ |+++.++.....++|.++||.++|++.+
T Consensus 89 ----------~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~ 149 (393)
T PRK11195 89 ----------IH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALAD 149 (393)
T ss_pred ----------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 2778999999999999999999999999888 9999999999999999999999999987
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 008719 177 EHGWGSAFGALAIAMGISN 195 (556)
Q Consensus 177 ~~gw~~~f~i~~~~~~~~~ 195 (556)
. .|+.++.+.+...+++.
T Consensus 150 ~-~~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 150 P-HAEAALAVCALIYLLAA 167 (393)
T ss_pred H-HHHHHHHHHHHHHHHHH
Confidence 5 47877777665544443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-21 Score=208.01 Aligned_cols=146 Identities=15% Similarity=0.204 Sum_probs=132.4
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
....+.+++.+++|+|..+.+++.+.+.++..++.+++|+++|| +|||++++.+.++.+++.++++++
T Consensus 38 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~----------- 105 (496)
T PRK03893 38 LITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVLFSVGTLACGFA----------- 105 (496)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 33444567778999999999999999999999999999999999 899999999999999998888876
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
.+.+.+++.|++.|++.+...++..+++.|.+++++ |++++++.+...++|..++|.
T Consensus 106 -----------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~ 162 (496)
T PRK03893 106 -----------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQ 162 (496)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999999999887 999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHH
Q 008719 170 LVVYIQMEHGWGSAFGALAIA 190 (556)
Q Consensus 170 i~~~l~~~~gw~~~f~i~~~~ 190 (556)
+.+++.+.++||+.|++..+.
T Consensus 163 ~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 163 VYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999875544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=197.51 Aligned_cols=148 Identities=7% Similarity=0.097 Sum_probs=129.7
Q ss_pred HHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccc
Q 008719 15 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 94 (556)
Q Consensus 15 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 94 (556)
.+.+.+++|+|..+.+++.+.+.++..++.+++|+++|| +||||++..+.++..++.++++++
T Consensus 30 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~l~~~~---------------- 92 (394)
T PRK03699 30 MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALMILAVAGLMFS---------------- 92 (394)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHc----------------
Confidence 345667899999999999999999999999999999999 899999999999999998888875
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 95 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 174 (556)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l 174 (556)
.+.+.+++.|+++|++.|...+...+++.|.+|+++ |++..+..+...++|..++|.+.+++
T Consensus 93 ------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 93 ------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred ------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999998877 99999988888899999999998887
Q ss_pred hc-ccchhHHHHHHHHHHHHHHHH
Q 008719 175 QM-EHGWGSAFGALAIAMGISNML 197 (556)
Q Consensus 175 ~~-~~gw~~~f~i~~~~~~~~~~~ 197 (556)
.. ..+||++|.+.++..++..++
T Consensus 155 ~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 155 LARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HhccccHHHHHHHHHHHHHHHHHH
Confidence 54 579999999877765544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=202.86 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=135.2
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
..+++++++|.|..+.+++.+.+.++..++.+++|+++|| +|||+.+.++.++..++.++++.+
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~--------------- 80 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFS--------------- 80 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHh---------------
Confidence 4467888999999999999999999999999999999999 899999999999999999888886
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH-HHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVV 172 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~-~i~~ 172 (556)
.+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.....++|..+++ .+++
T Consensus 81 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 141 (379)
T TIGR00881 81 -------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF 141 (379)
T ss_pred -------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence 577889999999999999999999999999999887 99999999999999999999 5777
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 173 YIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 173 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
.+.+..+|++.|++.++..++..+..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 142 GIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 7777889999999888765554444443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=198.30 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=125.0
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
.++...+.+.++.|++ ++|.|..++|++.+.+.++..+++++.|+++|| +|||+.+..+.++..+++.+++.+
T Consensus 19 ~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~~~~~~~~~~----- 91 (381)
T PRK03633 19 TLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFAAGCAGLGLM----- 91 (381)
T ss_pred HHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 4455556677777775 689999999999999999999999999999999 899999999999999998888875
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
.+.+.+++.|+++|++.+...|...+.+.+..++++ |++.++++....++|
T Consensus 92 -----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g 142 (381)
T PRK03633 92 -----------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLG 142 (381)
T ss_pred -----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHH
Confidence 567889999999999999998888888888887776 999999999999999
Q ss_pred HHHHHHHHHHhhcccchhH
Q 008719 164 AIVAFTLVVYIQMEHGWGS 182 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~gw~~ 182 (556)
..+||.+++.+.+...|..
T Consensus 143 ~~~g~~~~~~l~~~~~~~~ 161 (381)
T PRK03633 143 TVLGQLLVSKVSTELMSVL 161 (381)
T ss_pred HHHHHHHHhcccccccchH
Confidence 9999999999877543333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-21 Score=198.96 Aligned_cols=157 Identities=17% Similarity=0.119 Sum_probs=135.8
Q ss_pred HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 008719 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 91 (556)
Q Consensus 12 ~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (556)
....+++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+.+..+.++..++.+++...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~------------- 102 (398)
T TIGR00895 37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSVFTLLCALA------------- 102 (398)
T ss_pred HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 334456677899999999999999999999999999999999 899999999999988888877765
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008719 92 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 171 (556)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~ 171 (556)
.+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.....++|..+++.++
T Consensus 103 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~ 161 (398)
T TIGR00895 103 ---------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLA 161 (398)
T ss_pred ---------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999887 99999999999999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 172 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 172 ~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
+++.+..+|++.|++.++...+..+..+...+
T Consensus 162 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 193 (398)
T TIGR00895 162 GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLP 193 (398)
T ss_pred HHHhhcccceeehhhhhhHHHHHHHHHHHhCC
Confidence 99999899999999886554444444333333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-20 Score=196.96 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=119.0
Q ss_pred chhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHH-HHHHHhhHHHHhhhcccchhHHHH-HHHHHHHHHHHHHHHhhh
Q 008719 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 3 ~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~-~~~~~~~i~~~l~~~~~~ 80 (556)
.+++...+.+.++.|+++++|.|.++.|++.+.+.+ +..++++++|+ +|| +||||.++ .+.++.+++..+.+++
T Consensus 27 ~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~~~~~~~~~-- 102 (393)
T PRK15011 27 TGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVLACTLFAWN-- 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHHHHHHHHHh--
Confidence 345566678889999999999999999999877655 55555655666 999 89988754 5555555666666654
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhh--hhHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL--DRFFNFFYL 158 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~ 158 (556)
.+.+.+++.+.+.+...+...|...++..|..++++ | +...++...
T Consensus 103 --------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 150 (393)
T PRK15011 103 --------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSSFLRA 150 (393)
T ss_pred --------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHHHHHH
Confidence 355555555444444445667888888888765544 4 344567888
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 159 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 159 ~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
..++|.++||.+++++.+++|||.+|++.++..++..+..+...|
T Consensus 151 ~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 151 QVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 899999999999999998899999999988776655554444333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-20 Score=194.45 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=141.0
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
++...+.+.++.+. +++|+|..+.+++.+++.++..++.+++|+++|| +|||+.+..+.++..++..++..+
T Consensus 5 ~~~~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~------ 76 (377)
T PRK11102 5 LAIDMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALA------ 76 (377)
T ss_pred hHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHH------
Confidence 45555667777776 4699999999999999999999999999999999 899999999999999998888875
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.+.+.+++.|+++|++.+...+...+++.|.+|+++ |++.+++.+...++|.
T Consensus 77 ----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~ 128 (377)
T PRK11102 77 ----------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAP 128 (377)
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999999887 9999999999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
.++|.+++++.+..+|+++|++.++..++..+....
T Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 129 LLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999899999999887776655544443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=200.04 Aligned_cols=152 Identities=15% Similarity=0.089 Sum_probs=116.9
Q ss_pred HHhHHHHHHHhhCCChhhHhHHH-HHHH-----HHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAV-NNFL-----GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~-~~~~-----~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
.....+.+.++++.++.+.++.. +... +...+++++.|+++|| +||||.++.+..+..++.++++++......
T Consensus 34 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~ 112 (434)
T PRK15075 34 FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIMASGTLLIAFVPGYATI 112 (434)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 44555678889999888766544 2222 2224678999999999 899999999999999999999886210000
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.......++++|+++|++.|...++...+++|++|+++ |++..++.....++|.
T Consensus 113 --------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~ 166 (434)
T PRK15075 113 --------------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAV 166 (434)
T ss_pred --------------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHH
Confidence 00001257899999999999999999999999999988 9999999998888888
Q ss_pred HHHHHHHHHhh--------cccchhHHHHHHHH
Q 008719 165 IVAFTLVVYIQ--------MEHGWGSAFGALAI 189 (556)
Q Consensus 165 ~~g~~i~~~l~--------~~~gw~~~f~i~~~ 189 (556)
.+|+.+++.+. +.+|||++|++..+
T Consensus 167 ~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 167 VFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 88888777653 46899999997544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=204.44 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=125.8
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
.+++.+.+ +++.+++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++..+.++..++.++++.+
T Consensus 52 ~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~-------- 121 (476)
T PLN00028 52 TFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFCMSLV-------- 121 (476)
T ss_pred HHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHh--------
Confidence 33333333 46678999999999999999999999999999999999 899999999999988888877775
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
.+...+++.|+++|++.+...+ ...+++|++|+++ |+++.++.+...++|..+
T Consensus 122 --------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~ 174 (476)
T PLN00028 122 --------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGV 174 (476)
T ss_pred --------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHH
Confidence 4667888899999999987543 5567899999888 999999998888888888
Q ss_pred HHHHHHHhhc---------ccchhHHHHHHHHHHHHHHHHHHH
Q 008719 167 AFTLVVYIQM---------EHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 167 g~~i~~~l~~---------~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
++.+.+.+.. ..|||++|++.++..++..+..++
T Consensus 175 ~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 175 TQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8766654421 258999999988876655444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-20 Score=194.07 Aligned_cols=153 Identities=12% Similarity=0.078 Sum_probs=125.8
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
+.+....++++++ +++|.+..+.+++.+.+.++..++.+++|+++|| +||||++..+..+..++.+++.....
T Consensus 28 ~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~----- 100 (402)
T TIGR00897 28 GDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLLWCVGHAAFIVFGL----- 100 (402)
T ss_pred hhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3444556777887 5799999999999999999999999999999999 89999999999999888766533110
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH-
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA- 164 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~- 164 (556)
. ..+.+.+++.|+++|+|.+...+...+.+.+.+|+++ |+++.++.+...++|.
T Consensus 101 ~-------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ 155 (402)
T TIGR00897 101 G-------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIG 155 (402)
T ss_pred c-------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHH
Confidence 0 0356777889999999998888888888889988887 9999999999999996
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHH
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIA 190 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~ 190 (556)
++||.+++++.+.+||+..++.....
T Consensus 156 ~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 156 VFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHH
Confidence 68999999998888877666654443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-20 Score=193.82 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=130.9
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
..+.++ ++.+++|.|..+.+++.+.+.++..++.++.|+++|| +|||+.+..+..+..++.+++..+
T Consensus 27 ~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~----------- 93 (394)
T PRK11652 27 YVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIFILGTLVALFA----------- 93 (394)
T ss_pred HhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 333444 4567899999999999999999999999999999999 899999999999988888877765
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
.+.+.+++.|++.|++.+...+....+..|.+++++ |+++.++...+..+|..+||.
T Consensus 94 -----------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 150 (394)
T PRK11652 94 -----------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPL 150 (394)
T ss_pred -----------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999888888888888888766 899999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHH
Q 008719 170 LVVYIQMEHGWGSAFGALAIAMGISNML 197 (556)
Q Consensus 170 i~~~l~~~~gw~~~f~i~~~~~~~~~~~ 197 (556)
+++++.+..|||++|++.++..++..+.
T Consensus 151 i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 151 IGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 9999998889999999887765544333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=200.14 Aligned_cols=380 Identities=11% Similarity=-0.005 Sum_probs=219.3
Q ss_pred chhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008719 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 3 ~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~ 82 (556)
..++++.+.+.++.|+++++|+|..+.|.+.+.+.++..+++++.|+++|| +||||+++++..+..++..........
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~- 99 (420)
T PRK09528 22 FFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVLFGPFFIYVFA- 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345677789999999999999999999999999999999999999999999 899999988766655443322211000
Q ss_pred ccCCCCCCccccccccCCCCCccchhHH-HHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQML-YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
.... ....+.++.++..+...+...+...++.++.. + +++..++......+
T Consensus 100 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~g~~~g~~~~~~~ 151 (420)
T PRK09528 100 ------------------------PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS-R---RSGFEYGRARMWGS 151 (420)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH-h---hccccchhhHHhhh
Confidence 0000 11112222333333333333333333332111 1 16667788888889
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccc
Q 008719 162 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGL 241 (556)
Q Consensus 162 lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (556)
+|..++|.+++++.+ .+|+++|++.++..+++.+..+...++.++++...++
T Consensus 152 ~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 203 (420)
T PRK09528 152 LGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA--------------------------- 203 (420)
T ss_pred HHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc---------------------------
Confidence 999999999999876 5899999988877665555544433321110000000
Q ss_pred cccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhh-HHHHHHHHHHhhcchh
Q 008719 242 YEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIP-ACTIMLNVILTEFLTL 320 (556)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 320 (556)
++ + + .+..++.+.. ..-..+.+....... .....+.....+.+.+
T Consensus 204 ------~~--~---~---~~~~~~~~~~--------------------~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 249 (420)
T PRK09528 204 ------LG--A---N---ASAVSLKDAL--------------------ALLKLPKFWFLVLYVIGVACFYDVFDQQFPNF 249 (420)
T ss_pred ------hh--c---c---cccccHHHHH--------------------HHccCCCeEeehHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0 0000000000 000001111111111 1111122222222222
Q ss_pred HHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008719 321 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFER 400 (556)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~ 400 (556)
+..... +...+ ....+.+..+..+...+..++..++.||+++| +.+..+.++.+++....+..+
T Consensus 250 ~~~~~~--~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l~~~~~~l~~~~~- 313 (420)
T PRK09528 250 FASFFA--TPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTIMAVRIIGSGFAT- 313 (420)
T ss_pred HHHHHh--ccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHhcc-
Confidence 222111 11100 00112333344455556677777777777655 235566666666665554432
Q ss_pred HHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHH-HHHHHhHHHHHHHHH
Q 008719 401 YRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASIL 479 (556)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~ig~~lg~~l 479 (556)
+.++++...++.+++.....+...+++.+..|++.|++..+. +++...+|..+++.+
T Consensus 314 ----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~ 371 (420)
T PRK09528 314 ----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL 371 (420)
T ss_pred ----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH
Confidence 345566777888888888888888999999999999987665 677788999999999
Q ss_pred HHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 480 NSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 530 (556)
Q Consensus 480 ~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~ 530 (556)
.+.+.+..| | ...|++.+++.++..++.+...+
T Consensus 372 ~G~l~~~~G--------~----------~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 372 AGNLYDSIG--------F----------QGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHhhC--------c----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 998877433 2 45677777777766655554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-20 Score=192.83 Aligned_cols=353 Identities=10% Similarity=0.005 Sum_probs=219.0
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHH-HHHHHH-HHHHhhhccc
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YLAGLT-GITLCATMKV 83 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~-~~i~~~-l~~~~~~~~~ 83 (556)
++....++++.|++ ++|+|..+.|++.+.+.+...+++++.|.++|| +||++.......+ ..+..+ ++..+
T Consensus 19 ~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~~~~~~~----- 91 (382)
T TIGR00902 19 AYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAAAFSAGA----- 91 (382)
T ss_pred HHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 34445677778885 689999999999999999999999999999999 8985433221111 111111 22222
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
.+.+.+++.|++++.+.+...|...++..+. +++ |++.++......++|
T Consensus 92 -----------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~~~slG 140 (382)
T TIGR00902 92 -----------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRLIGSAA 140 (382)
T ss_pred -----------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHHHHHHH
Confidence 4678888999999999999889888887543 333 788899999999999
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccc
Q 008719 164 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE 243 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (556)
.++||.+++++.+++|||..|++.+....+.. +.+...++. ++++++ +
T Consensus 141 ~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~~~--------------------~-------- 188 (382)
T TIGR00902 141 FIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKDAI--------------------P-------- 188 (382)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCccc--------------------c--------
Confidence 99999999999999999999988665433222 222222211 000000 0
Q ss_pred cCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHH
Q 008719 244 VPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 323 (556)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (556)
.+ +.....++ ....+.|++... .....+.......+.+....
T Consensus 189 ---~~---------~~~~~~~~-----------------------~~~l~~~~~~~~---l~~~~l~~~~~~~~~~~~~~ 230 (382)
T TIGR00902 189 ---ED---------ESQGDSAF-----------------------IALLKNPMNLRF---LAAVCLIQGAHAAYYGFSAI 230 (382)
T ss_pred ---cc---------ccccchhH-----------------------HHHHcChHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 00 00000000 000011111111 11111122222222222221
Q ss_pred HhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 324 QAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRR 403 (556)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 403 (556)
+.. +.+.. ....+....+..+..++... +.+++.+| .+.++.+.++.++.++..+.+.+.+
T Consensus 231 ~l~--~~g~s--~~~~g~l~~~~~~~~i~~~~----~~~~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~---- 291 (382)
T TIGR00902 231 YWQ--AAGIS--ASATGLLWGIGVLAEIIIFA----FSNKLFQN-------CSARDLLLISAIACVGRWAIIGAIE---- 291 (382)
T ss_pred HHH--HCCCC--HhHHHHHHHHHHHHHHHHHH----HhHHHHhh-------CCHHHHHHHHHHHHHHHHHHHHhHh----
Confidence 111 11110 11111222222333333333 33444555 4555678888888888877766543
Q ss_pred hhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHH-HHHhHHHHHHHHHHHH
Q 008719 404 NYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSI 482 (556)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~ig~~lg~~l~~~ 482 (556)
+.+.++...++.++..++..+....++.+. |++.|++++++.+ ...++|..+++.+.|.
T Consensus 292 -------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~ 351 (382)
T TIGR00902 292 -------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF 351 (382)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677778999999999999999999988 9999999999987 5678999999999999
Q ss_pred hhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHH
Q 008719 483 IKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCA 524 (556)
Q Consensus 483 i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~ 524 (556)
+.+..| ...|+..+++++++++.
T Consensus 352 l~~~~g-------------------~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 352 IYPTLG-------------------AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHhcc-------------------HHHHHHHHHHHHHHHHH
Confidence 887444 24577788877766443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=203.20 Aligned_cols=372 Identities=17% Similarity=0.196 Sum_probs=249.4
Q ss_pred HhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccC
Q 008719 20 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG 99 (556)
Q Consensus 20 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (556)
.++.+|..|.+++.+.+..|..++++++|+++|| +|-|+++..+.++.++++++..+++.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~------------------- 125 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAAS------------------- 125 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 4688999999999999999999999999999999 89999999999999999999998854
Q ss_pred CCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 008719 100 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-H 178 (556)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~-~ 178 (556)
.+.+.+++.|++||++.|...|+...+.+++.|++| |+++.++.+....+|.+++..++|++.++ .
T Consensus 126 -------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~ 192 (466)
T KOG2532|consen 126 -------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSL 192 (466)
T ss_pred -------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCC
Confidence 455678999999999999999999999999999999 99999999999999999999999999998 9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCCCccc
Q 008719 179 GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIA 258 (556)
Q Consensus 179 gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 258 (556)
||+++|++.++..++..++++....+.+.++|.-++. +.. .+++++.++..+
T Consensus 193 GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~---------------------El~-~I~~~k~~~~~~------ 244 (466)
T KOG2532|consen 193 GWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEK---------------------ELK-YIEKGKSEAHVK------ 244 (466)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHH---------------------HHH-HHHhcccccccC------
Confidence 9999999999987777666665555433333221110 000 111110000000
Q ss_pred cCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhh-------hHHHHHHHHHHhhcchhHHHHhhhcccc
Q 008719 259 HTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-------PACTIMLNVILTEFLTLSVQQAYTMNTH 331 (556)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (556)
+. ...||+ .+++..++ +.-...+.+..++.|+++- +..++|..
T Consensus 245 ~~------------------~~vP~~-----------~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~-~VL~f~v~ 294 (466)
T KOG2532|consen 245 KK------------------PPVPYK-----------AILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK-EVLGFDVR 294 (466)
T ss_pred CC------------------CCCCHH-----------HHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHhCCChh
Confidence 00 022332 22222222 2223333344444444333 33444433
Q ss_pred cccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008719 332 MGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV--GIGLAVSILSVIWAGIFERYRRNYAISH 409 (556)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (556)
..+.+++++.+...+...+.+.+.|++.+| .-. ....+++ .++....++.++.+++...
T Consensus 295 ------~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~--------- 355 (466)
T KOG2532|consen 295 ------ETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD--------- 355 (466)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC---------
Confidence 346677788888888888888999988776 211 2333334 4556666666666655431
Q ss_pred CccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCC
Q 008719 410 GYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGN 489 (556)
Q Consensus 410 ~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~ 489 (556)
-..+..++.+.+.-...++..+..+.-..+.+ +++.+..+|+.+....+.++++|.+++.+.. .
T Consensus 356 ------------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~-- 419 (466)
T KOG2532|consen 356 ------------EHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-D-- 419 (466)
T ss_pred ------------CcchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C--
Confidence 01111222222111111222222222222224 4778999999999999999999999997763 1
Q ss_pred CCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 008719 490 PKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA 529 (556)
Q Consensus 490 ~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~ 529 (556)
+ ...+| ..+|++.+++.+++.+++.++.
T Consensus 420 -~-t~~eW----------~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 420 -N-TREEW----------RIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred -C-CHHHH----------HHHHHHHHHHHHHhchheeEee
Confidence 1 23445 5789999999999888777665
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-19 Score=191.40 Aligned_cols=158 Identities=16% Similarity=0.121 Sum_probs=135.7
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
+....+.++ .+.+++|.|..+.+++.+.+.++..++.++.|+++|| +|||+.++++.++..++..++..+
T Consensus 19 ~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~~~-------- 88 (392)
T PRK10473 19 IDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCSLA-------- 88 (392)
T ss_pred HHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHHHh--------
Confidence 333343444 5567899999999999999999999999999999999 899999999999999988887775
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
.+.+.+++.|+++|++.+...+...+++.|.+|+++ |+++.++.+...++|..+
T Consensus 89 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~ 142 (392)
T PRK10473 89 --------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVL 142 (392)
T ss_pred --------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999887 999999999999999999
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 167 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 167 g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
+|.+++.+.+..+|++.|++.++...+..+..+.
T Consensus 143 ~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 143 APVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888889999999887765555444333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-20 Score=193.18 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=130.8
Q ss_pred HHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccc
Q 008719 18 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 97 (556)
Q Consensus 18 l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (556)
+++++|.++.+.+++.+.+.++..++.+++|+++|| +|||+.+..+..+..++.+++..+
T Consensus 32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~------------------- 91 (401)
T PRK11043 32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWV------------------- 91 (401)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 678899999999999999999999999999999999 899999999999988888887775
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008719 98 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 177 (556)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 177 (556)
.+.+.+++.|+++|++.+...+...+++.|.+++++ +.+.++......++|..++|.+++++.+.
T Consensus 92 ---------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 156 (401)
T PRK11043 92 ---------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNH 156 (401)
T ss_pred ---------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999998888888899999998877 88888888888899999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 008719 178 HGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 178 ~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
++||++|++.++..++..+..+.
T Consensus 157 ~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 157 FGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred CChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887776655544433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-21 Score=193.68 Aligned_cols=383 Identities=12% Similarity=0.005 Sum_probs=240.9
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
..+++.++.++|.+|.|.+.+.+++.+.++-.+.|.++|| .+.|+.+..++++.++..++++++
T Consensus 51 a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~nil~Gfs--------------- 114 (448)
T COG2271 51 AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIVNILFGFS--------------- 114 (448)
T ss_pred ccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHHHHHHhhh---------------
Confidence 3477888899999999999999999999999999999999 899999999999999999999997
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH--
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-- 171 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~-- 171 (556)
.+.+.+.+..++.|..+|.-.|.....++.+++++| |++..++++.+.|+|..+.|.+.
T Consensus 115 -------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~l 175 (448)
T COG2271 115 -------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALL 175 (448)
T ss_pred -------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHH
Confidence 578899999999999999999999999999999999 99999999999999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccc
Q 008719 172 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAI 251 (556)
Q Consensus 172 ~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (556)
+++..+++||..|+++++.+++..+..+...++.+. .+- +|..+.| .++..|..
T Consensus 176 a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq----s~G------------------LP~ie~~---~~d~~e~~- 229 (448)
T COG2271 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ----SEG------------------LPPIEEY---RGDPLEIY- 229 (448)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc----ccC------------------CCCHHHh---hcCchhhh-
Confidence 999998999999999999876655555544433221 111 1111111 00000000
Q ss_pred cCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHH---HHHHhhcchhHHHHhhhc
Q 008719 252 KGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML---NVILTEFLTLSVQQAYTM 328 (556)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 328 (556)
.++.++++ ...++...+.+-..|.+..+. ++-..+| +.+..+.+ .+..+..++
T Consensus 230 --~~~~~~~~-------------------ls~~~i~~~YVL~Nk~iW~la--~a~vfvYivR~gi~dW~p-~YL~e~k~~ 285 (448)
T COG2271 230 --EEEKENEG-------------------LTAWQIFVKYVLKNKLIWLLA--LANVFVYVVRYGINDWGP-LYLSEVKGF 285 (448)
T ss_pred --hhhccCCC-------------------ccHHHHHHHHHHcChHHHHHH--HHHHHHHHHHHHHhhhHH-HHHHHhcCC
Confidence 00000000 000000001111111111110 1111111 11222222 333344444
Q ss_pred ccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008719 329 NTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAIS 408 (556)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~ 408 (556)
+.. ...+.....-...+....+.++++|++.+.. +.+... +.++...+++.....
T Consensus 286 s~~------~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~--i~~~~i~~~~~~~w~----------- 340 (448)
T COG2271 286 SLV------KANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMAL--IFMLLITASLVLYWL----------- 340 (448)
T ss_pred CHH------HHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchHHH--HHHHHHHHHHHHHHc-----------
Confidence 433 2222222334445566666777777775321 122111 111222222221111
Q ss_pred cCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhH-HHHHHHHHHHHhhhcc
Q 008719 409 HGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL-GCFAASILNSIIKSVT 487 (556)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~i-g~~lg~~l~~~i~~~~ 487 (556)
+|+.+.+...+.++.+|+..-.-....-..+.|.+|++-.|++.|+..++..+ |..++....+.+.+..
T Consensus 341 ----------~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~ 410 (448)
T COG2271 341 ----------APNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW 410 (448)
T ss_pred ----------CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence 12124454555555555544333333445667889999999999999998888 8888888888776632
Q ss_pred CCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 488 GNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 488 ~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
+| ...|.++.+.++++.+.+....+.+++
T Consensus 411 --------gW----------~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 411 --------GW----------DGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred --------CC----------cchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 36 456777777777777777777664443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-20 Score=196.52 Aligned_cols=158 Identities=11% Similarity=0.056 Sum_probs=129.6
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
..+++++ +|.|..+.+++.+.+.++..++.++.|+++|| +|||+.+..+.++..++.++++.... .
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~---~--------- 114 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPW---A--------- 114 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhcccc---c---------
Confidence 3456765 59999999999999999999999999999999 89999999999888888777665310 0
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
..+...+++.|++.|++.|...+.....+.|++|+++ |++++++.+...++|..+++.+.+.
T Consensus 115 ------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 115 ------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred ------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHH
Confidence 0345677889999999999999999999999999888 9999999999999999999887775
Q ss_pred hh-cccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 174 IQ-MEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 174 l~-~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
.. ...+||++|++.++..++..+..++..+
T Consensus 177 ~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 177 GMAWFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44 4568999999988776655444433333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-19 Score=186.67 Aligned_cols=335 Identities=11% Similarity=0.060 Sum_probs=200.9
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchh----HHHHHHHHHHHHHHHHHHHhhh
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr----~~~~~~~~~~~i~~~l~~~~~~ 80 (556)
+++..+.+.++.|++ ++|.|..++|++.+.+.+...++++++|.++|| +||| +.+.+...+. .......+
T Consensus 18 ~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~--~~~~~~~~-- 91 (382)
T PRK11128 18 FAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF--AVAFWFGA-- 91 (382)
T ss_pred HHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH--HHHHHHhc--
Confidence 344556677888985 589999999999999999999999999999999 8984 3322222111 11111111
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
++.+.+++.|+++|++.+...|...++..++ .++ |++.++......
T Consensus 92 --------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~ 137 (382)
T PRK11128 92 --------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWG 137 (382)
T ss_pred --------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHH
Confidence 4678888999999999999999888887775 233 677777788888
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccccccc
Q 008719 161 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
++|.++||.+++++.+++|||.+|++.++..++..+... ..++. +|++++
T Consensus 138 ~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~-------------------------- 187 (382)
T PRK11128 138 SIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGES-------------------------- 187 (382)
T ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCcccc--------------------------
Confidence 999999999999999999999999987765444433222 22211 111000
Q ss_pred ccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchh
Q 008719 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTL 320 (556)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (556)
+ +. .+....++ .+..+.|.+.... ....+....+....+.
T Consensus 188 -------~---~~----~~~~~~~~-----------------------~~i~~~~~~~~~~---~~~~l~~~~~~~~~~~ 227 (382)
T PRK11128 188 -------R---QQ----ESAGWPAW-----------------------KALLKEPTVWRFL---LCVSLLQGSHAAYYGF 227 (382)
T ss_pred -------c---cc----cccccchH-----------------------HHHHcChhHHHHH---HHHHHHHHHhHhHHHH
Confidence 0 00 00000000 0001111211111 1111111111111121
Q ss_pred HHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008719 321 SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFER 400 (556)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~ 400 (556)
...+.. +.+.. ....+.+.....+..++...+.+++ .+| .+.++.+..+.++.+++++.+...+
T Consensus 228 ~~~~~~--~~g~s--~~~~g~~~~~~~~~~~~~~~~~g~l----~~r-------~~~~~~l~~~~~~~~~~~~~~~~~~- 291 (382)
T PRK11128 228 SAIYWQ--AAGYS--ASTIGYLWSLGVVAEVLIFAFSNRL----FRR-------WSARDLLLLSAICGVVRWGLMGSTT- 291 (382)
T ss_pred HHHHHH--HCCCC--HhHHHHHHHHHHHHHHHHHHHHHHH----HHH-------CCHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 111111 11110 1111222223333333443444444 444 3344556777777777766554432
Q ss_pred HHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHH-HHHhHHHHHHHHH
Q 008719 401 YRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASIL 479 (556)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~ig~~lg~~l 479 (556)
+.+.+++..++.|++++...+....+..+. |++.+++.+++.+ ....+|..+|+.+
T Consensus 292 ----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i 348 (382)
T PRK11128 292 ----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVL 348 (382)
T ss_pred ----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778889999999999999988887 5566788899886 5566788999999
Q ss_pred HHHhhhccC
Q 008719 480 NSIIKSVTG 488 (556)
Q Consensus 480 ~~~i~~~~~ 488 (556)
.|.+.+..|
T Consensus 349 ~G~l~~~~g 357 (382)
T PRK11128 349 SGFLYQHLG 357 (382)
T ss_pred HHHHHHhcc
Confidence 999887544
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-19 Score=187.60 Aligned_cols=375 Identities=12% Similarity=0.028 Sum_probs=220.0
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccch-hHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-r~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
++-...+.++.|+++++|++..|.|++.+.+.++..++++++|+++|| +|| |+++.++.++..+++.+..+.
T Consensus 17 ~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~~~------ 89 (418)
T TIGR00889 17 IWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAAQV------ 89 (418)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHh------
Confidence 344455888999999999999999999999999999999999999999 755 778888777777776666654
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccC--------CCCCcchhhhhhhHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF--------DERSKDYKTHLDRFFNFF 156 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~--------~~~~~~~~~~r~~~~~~~ 156 (556)
.+.+.+.+.|++.|++.+...+...++..+.. .... |.|.++
T Consensus 90 ----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r~~G-- 139 (418)
T TIGR00889 90 ----------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIRVMG-- 139 (418)
T ss_pred ----------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ceeeeh--
Confidence 45677788889999988777776665532222 1112 555544
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccc
Q 008719 157 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSS 236 (556)
Q Consensus 157 ~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (556)
.+|.++||.+++.+.....|. +|++.++..++..+..+ ..++.+..+++++. +
T Consensus 140 ----~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~--~------------------- 192 (418)
T TIGR00889 140 ----TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAKM--S------------------- 192 (418)
T ss_pred ----hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCcccccc--C-------------------
Confidence 478999999999885433354 56666655444443322 22221110000000 0
Q ss_pred ccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 008719 237 ELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTE 316 (556)
Q Consensus 237 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (556)
..+..+.+. ....+.+++. .+.....+.......
T Consensus 193 --------------------~~~~~~~~~-----------------------~~~~k~~~~~---~~~~~~~~~~~~~~~ 226 (418)
T TIGR00889 193 --------------------IKVMLGLDA-----------------------FILFKNKRMA---IFFFFSMLLGAPLQI 226 (418)
T ss_pred --------------------HHHHhhhhH-----------------------HHHhcCCCee---eHHHHHHHHHhHHHH
Confidence 000000000 0000001111 111111111111111
Q ss_pred cchhHHHHhh--hcccccc-ccc-ccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHH
Q 008719 317 FLTLSVQQAY--TMNTHMG-KLK-LPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSV 392 (556)
Q Consensus 317 ~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~ 392 (556)
.+..+..+.. +.+...+ ++. -..+....+..+..++.....+++.||+++| +.+..+.++.++++
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~v~~ 295 (418)
T TIGR00889 227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVMLLSLVAWALRF 295 (418)
T ss_pred HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHH
Confidence 1111111111 1111000 000 0112223333444445555666666665544 44677777776665
Q ss_pred HHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHH-HHHhH
Q 008719 393 IWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGL 471 (556)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~i 471 (556)
........ .+ ...+.+++..++.+++++...+....++.+..|++.|++++|+.+ ....+
T Consensus 296 ~l~~~~~~------------------~~-~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~l 356 (418)
T TIGR00889 296 GFFAYGDP------------------EY-FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGF 356 (418)
T ss_pred HHHHHcCc------------------ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhh
Confidence 55543210 01 123445667888999999999999999999999999999999997 56789
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008719 472 GCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 532 (556)
Q Consensus 472 g~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~ 532 (556)
|..+|+.+.|.+.+..+ ..+..+ +...|.+.+++.++..+..+++.++.
T Consensus 357 g~~iGp~l~G~l~~~~g--~~~~~~----------~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 357 GSLLGYILSGVMVEKMF--AYGTFD----------WQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHHHhc--cccCCc----------hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999998887544 111112 35678888888888877777777644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-19 Score=190.54 Aligned_cols=352 Identities=14% Similarity=0.110 Sum_probs=219.4
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcc---cchhH-HHHHHHHHHHHHHHHHHHhh
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGITLCA 79 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~-~~~~~~~~~~i~~~l~~~~~ 79 (556)
.+.+..+..+++.|+++++|+++.++|++.++..+...+..|+.|+++||. +|||| .++.+....+++.+++...
T Consensus 12 ~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~- 90 (437)
T TIGR00792 12 NFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT- 90 (437)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC-
Confidence 344556667889999999999999999999999999999999999999972 57755 5667777777777776653
Q ss_pred hccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCC-CCcchhhhhhhHHHHHHH
Q 008719 80 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL 158 (556)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ 158 (556)
|... +......+++.+++.+++.+...+...++..|..++ ++ |++..++...
T Consensus 91 --~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~ 143 (437)
T TIGR00792 91 --PDFS-------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRF 143 (437)
T ss_pred --CCCC-------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHH
Confidence 1110 113456777888889999998888888999998754 44 9999999888
Q ss_pred HHHHHHHHHHHHHHHhh-------cccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccc
Q 008719 159 SVTVGAIVAFTLVVYIQ-------MEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA 231 (556)
Q Consensus 159 ~~~lG~~~g~~i~~~l~-------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (556)
..++|..++..+.+.+. +..+|++++.+.++..++..+..+...++.+.+.+.+++
T Consensus 144 ~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~----------------- 206 (437)
T TIGR00792 144 GATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE----------------- 206 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc-----------------
Confidence 88898887776655544 246899999888877666555544433321100000000
Q ss_pred cccccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHH
Q 008719 232 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN 311 (556)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (556)
++.+..+... .....|.+... .....+.+
T Consensus 207 -----------------------------~~~~~~~~~~-------------------~l~~~~~~~~~---~~~~~~~~ 235 (437)
T TIGR00792 207 -----------------------------KKLSLKQIFK-------------------ALFKNDQLLIL---CLAYLFYN 235 (437)
T ss_pred -----------------------------cCCCHHHHHH-------------------HHhCCHHHHHH---HHHHHHHH
Confidence 0000000000 00011111111 11111111
Q ss_pred HHHhhcchhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHH
Q 008719 312 VILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILS 391 (556)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~ 391 (556)
..+.......... . ...++. ....+.+..+..+..++..++..++.+|+++| +.+..+.++.+++
T Consensus 236 ~~~~~~~~~~~~~-~--~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~ 300 (437)
T TIGR00792 236 LAFNIKNGVQVYY-F--TYVLGD-PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----------ILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHcchhhee-E--eeecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHH
Confidence 1111111111100 0 000000 00112233334555666677777766665544 3456666666666
Q ss_pred HHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcC-------chhHHHHHHH
Q 008719 392 VIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAY 464 (556)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl 464 (556)
++...... .+.+.+++..++.+++.+...+..+++..+.+| ++.+|.+.|+
T Consensus 301 ~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 358 (437)
T TIGR00792 301 YLIFFFAG----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV 358 (437)
T ss_pred HHHHHHcc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence 55544321 133445566778889999889999999888765 5678999999
Q ss_pred HHHHHhHHHHHHHHHHHHhhhccC
Q 008719 465 AALAGGLGCFAASILNSIIKSVTG 488 (556)
Q Consensus 465 ~~~~~~ig~~lg~~l~~~i~~~~~ 488 (556)
.++...+|..+++.+.+.+.+..|
T Consensus 359 ~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 359 RTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998887554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=187.39 Aligned_cols=164 Identities=18% Similarity=0.206 Sum_probs=120.9
Q ss_pred hhhhhhhHHhHHHHHHHhhC--CChhhHhHHHHH--HH---HHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008719 4 RMAYFGLSVNMVTFMFYVMH--KSFADSSNAVNN--FL---GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 76 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg--~s~~~~~~~~~~--~~---~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~ 76 (556)
.+..+.+. ....++.++.. .++++.+.+.+. +. +...+++++.|+++|| +||||++.++.++..++.++++
T Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 6 WFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred HHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHh
Confidence 34444444 35556655543 455556554443 32 3334688999999999 8999999999999999988888
Q ss_pred HhhhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHH
Q 008719 77 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 156 (556)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 156 (556)
++..... ........+++.|+++|++.+...+...+++.|.+++++ |++..++.
T Consensus 84 ~~~~~~~--------------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 137 (394)
T TIGR00883 84 LLPSYAT--------------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQ 137 (394)
T ss_pred hCCChhh--------------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHH
Confidence 7621000 000123468899999999999999999999999999888 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHHHHHHHH
Q 008719 157 YLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISN 195 (556)
Q Consensus 157 ~~~~~lG~~~g~~i~~~l~--------~~~gw~~~f~i~~~~~~~~~ 195 (556)
+....+|.++++.++..+. +.++||++|++.++..+++.
T Consensus 138 ~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 138 QVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 9999999999998876653 35789999998776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-26 Score=243.86 Aligned_cols=397 Identities=16% Similarity=0.115 Sum_probs=245.0
Q ss_pred hhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccc
Q 008719 27 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 106 (556)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (556)
.+.++..+...++..++.+++|+++|| +|||+.+.++..+..++.++.+++.. .
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~-------------------------~ 99 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPS-------------------------Y 99 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccc-------------------------c
Confidence 356889999999999999999999999 89999999999999999999998711 0
Q ss_pred hhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---ccchhHH
Q 008719 107 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSA 183 (556)
Q Consensus 107 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~---~~gw~~~ 183 (556)
.+.+.+.++|+++|++.|+..+....++.|..|++. |++..++......+|..++..++-.+.. ..+||+.
T Consensus 100 ~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~ 173 (451)
T PF00083_consen 100 NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRIL 173 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc
Confidence 167899999999999999999999999999999988 9999999999999999988876654433 2459999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCCCccccCCch
Q 008719 184 FGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDF 263 (556)
Q Consensus 184 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 263 (556)
+++.++..++..+...+ +||||+| +..+++.+++++..+++.+.+..
T Consensus 174 ~~~~~~~~l~~~~~~~~--------------------------------~pESP~w-L~~~~~~~~A~~~l~~~~~~~~~ 220 (451)
T PF00083_consen 174 LIFGAIPSLLVLLLRFF--------------------------------LPESPRW-LLSKGRDEEAEKVLRKLRGKEIE 220 (451)
T ss_pred ccccccccccccccccc--------------------------------cccccce-ecccccccccccccccccccccc
Confidence 98887765543332221 7999999 99999888888877665433211
Q ss_pred --hHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHH-HHHhhcchhHHHHhhhcccccccccccCC
Q 008719 264 --RCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN-VILTEFLTLSVQQAYTMNTHMGKLKLPVT 340 (556)
Q Consensus 264 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (556)
+..+........+ +....|+...+... .++++...+.+........ .....+.+.... .. .....
T Consensus 221 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~------~~----~~~~~ 288 (451)
T PF00083_consen 221 DEEIEEIKAEKKESQ-ESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFE------NA----GISNS 288 (451)
T ss_pred ccccccccccccccc-ccceeeeecccccc-cccccccccccccccccccccccccccccccc------cc----ccccc
Confidence 1111100000000 00011221111111 1122221111111110000 000011111111 00 11111
Q ss_pred -cccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhccCccccccCc
Q 008719 341 -CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGI-FERYRRNYAISHGYEFSFLTA 418 (556)
Q Consensus 341 -~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 418 (556)
..+....+..++...+...+.|+++||. ....+..++++++..++. .... .+. +
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~GRr~-----------~~i~~~~~~~~~~~~~~~~~~~~------~~~-------~ 344 (451)
T PF00083_consen 289 FLATLILGLVNFLGTLLAIFLIDRFGRRK-----------LLIIGLLLMAICSLILGIIFFLG------VSS-------S 344 (451)
T ss_pred ccccccccccccccccccccccccccccc-----------ccccccccccccccccccccccc------ccc-------c
Confidence 1222222233333333345666666663 245566666666555541 1100 000 0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 008719 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL 498 (556)
Q Consensus 419 ~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~ 498 (556)
.. .+...++...+..........+..+.+..|..|++.|+++.|+....+++++++++.+.+.+.+..+ .
T Consensus 345 ~~-~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-------~-- 414 (451)
T PF00083_consen 345 SW-WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-------G-- 414 (451)
T ss_pred cc-cccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------c--
Confidence 00 1222222222222233334567777899999999999999999999999999988888776544211 0
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCc
Q 008719 499 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGND 543 (556)
Q Consensus 499 ~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 543 (556)
...|++.++++++..+..+++.+|++++++||.+++
T Consensus 415 ---------~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 415 ---------WGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ---------cccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 145777788888888888888999999999887654
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-19 Score=188.80 Aligned_cols=375 Identities=11% Similarity=0.019 Sum_probs=219.2
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
-.++..+.++++.|+++++|.+..+.+++.+.+.+...+++++.|+++|| +||||.++.+....+++..........+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (396)
T TIGR00882 15 FFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLFAPFFIYVFGPL 93 (396)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34566677889999999999999999999999999999999999999999 89999998877766554433221100000
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
. .......+++.+++.|++.+...|....+..|..+ + +++.++......++|
T Consensus 94 ~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~~~~g 145 (396)
T TIGR00882 94 L--------------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMFGCVG 145 (396)
T ss_pred H--------------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhhcccH
Confidence 0 00123446677888999999888888887766432 2 344566777788999
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccc
Q 008719 164 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE 243 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (556)
.++||.+++.+.+ .+|+.+|++.++..++..+..+...++.++ ++... +. .
T Consensus 146 ~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------------~~-----------~- 196 (396)
T TIGR00882 146 WALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPS----SATVA------------NA-----------L- 196 (396)
T ss_pred HHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCch----hhhhh------------cc-----------c-
Confidence 9999999998865 699999999887766555444332222110 00000 00 0
Q ss_pred cCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhh-HHHHHHHHHHhhcchhHH
Q 008719 244 VPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIP-ACTIMLNVILTEFLTLSV 322 (556)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 322 (556)
+. .+. +.+..+.. +..++ |.+....... .....+.....+.+.++.
T Consensus 197 --------~~----~~~-~~~~~~~~-------------------~~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~y~~ 243 (396)
T TIGR00882 197 --------GA----NAS-AFSLKLAL-------------------ELFRQ-RKFWMFVLYVVGVACVYDVFDQQFANFFT 243 (396)
T ss_pred --------cc----ccC-CCCHHHHH-------------------HHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 00000000 00001 1111111111 111111111112222222
Q ss_pred HHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008719 323 QQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYR 402 (556)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~ 402 (556)
.... +...+ ....+....+..+...+......++.+|+++| +.+.++.++.++++......
T Consensus 244 ~~~~--~~~~~--~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-----------~~l~~~~~l~~l~~~~~~~~---- 304 (396)
T TIGR00882 244 SFFA--TPQQG--TRVFGYVTTMGELLNALIMFCAPLIINRIGAK-----------NALLIAGTIMSVRIIGSSFA---- 304 (396)
T ss_pred Hhcc--ccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHHhc----
Confidence 2111 00100 00012222333344444555555665555544 33566666666655443322
Q ss_pred hhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHH-HHHHHhHHHHHHHHHHH
Q 008719 403 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNS 481 (556)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~ig~~lg~~l~~ 481 (556)
.+.+++++..++.+++..........+..+..|++.+++..+. .+....+|+.+++.+.+
T Consensus 305 -------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G 365 (396)
T TIGR00882 305 -------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG 365 (396)
T ss_pred -------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH
Confidence 1455566677788888777666777777788888888887766 67888999999999999
Q ss_pred HhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHH
Q 008719 482 IIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAF 525 (556)
Q Consensus 482 ~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~ 525 (556)
.+.+..| +...|.+.+++.++..++.
T Consensus 366 ~l~~~~G------------------~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 366 NMYDSIG------------------FQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHhcc------------------cHHHHHHHHHHHHHHHHHH
Confidence 9877444 3466777777776665543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-21 Score=197.69 Aligned_cols=153 Identities=21% Similarity=0.238 Sum_probs=142.0
Q ss_pred HHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 008719 17 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 96 (556)
Q Consensus 17 yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (556)
-.++.+|+++++.|.+.+.|.+.+.+..|+.|+++|| +.||+++.+|..+++++.++++++
T Consensus 58 ~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW~~Av~~~~fs------------------ 118 (493)
T KOG1330|consen 58 EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIWTLAVFASGFS------------------ 118 (493)
T ss_pred HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHHHHHHHHHHHH------------------
Confidence 4566799999999999999999999999999999999 799999999999999999999997
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008719 97 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 176 (556)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~ 176 (556)
.++|++.+.|.+.|+|.+...|.++++++|.+|+.+ |++.++++|++.++|..+|..+++.+..
T Consensus 119 ----------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~ 182 (493)
T KOG1330|consen 119 ----------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVAS 182 (493)
T ss_pred ----------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeecc
Confidence 688999999999999999999999999999999998 9999999999999999999999999988
Q ss_pred ccc-hhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 177 EHG-WGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 177 ~~g-w~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
..+ |||.|+..+++.++..++.+++.++
T Consensus 183 ~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 183 LTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred CccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 777 9999999999887777776665554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=187.03 Aligned_cols=130 Identities=15% Similarity=0.030 Sum_probs=112.1
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
+.+.+++++|.|+.+.+++.+.+.++..+++++.|+++|| +||||++..+..+++++.+++..+..
T Consensus 48 ~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~~~~l~~~~~~------------- 113 (438)
T PRK10133 48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAE------------- 113 (438)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 3456689999999999999999999999999999999999 89999999999999999987643211
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
..++..++++|+++|+|.|...++.++++.|..++++ |.+..++......+|..+|+.+++.
T Consensus 114 ------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 114 ------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred ------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0467899999999999999999999999998765554 6667888888889999999988876
Q ss_pred hh
Q 008719 174 IQ 175 (556)
Q Consensus 174 l~ 175 (556)
+.
T Consensus 176 l~ 177 (438)
T PRK10133 176 LI 177 (438)
T ss_pred HH
Confidence 54
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=180.94 Aligned_cols=331 Identities=12% Similarity=0.063 Sum_probs=208.1
Q ss_pred hhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008719 9 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 88 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 88 (556)
.....+.+.+.+++|.|.++.+++.+.+.++..++.++.|+++|| +||||++.++.++..++.+.+ ..
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~---------- 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SA---------- 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hh----------
Confidence 333344456778999999999999999999999999999999999 899999999988887777665 32
Q ss_pred CCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 008719 89 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 168 (556)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 168 (556)
.+.+.+++.|++.|++.+...+.......|.++ ++ |+++.++.+...++|..+++
T Consensus 85 ------------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~ 139 (355)
T TIGR00896 85 ------------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAA 139 (355)
T ss_pred ------------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999988888888888875 45 89999999999999999999
Q ss_pred HHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCC
Q 008719 169 TLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPG 246 (556)
Q Consensus 169 ~i~~~l~~~~--gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (556)
.+++.+.+.. +||+.|.+.++..++.... +. ++.+++++.+++ +
T Consensus 140 ~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~-~~--~~~~~~~~~~~~-------------------~------------ 185 (355)
T TIGR00896 140 AATVPLAQHSGGHWQQALAWWALPALLALLA-WI--PQVRRRVAANQT-------------------T------------ 185 (355)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-Hh--hhhccccCCCCC-------------------C------------
Confidence 9999887664 3999987766543333222 11 111110000000 0
Q ss_pred CCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhh
Q 008719 247 KHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 326 (556)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (556)
.+ ..++.. .++.+..............++....+.+.++.. .
T Consensus 186 --------------~~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~ 227 (355)
T TIGR00896 186 --------------TR------------------LTPVRI----WRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS--H 227 (355)
T ss_pred --------------CC------------------CCCchh----hcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c
Confidence 00 000000 001111110111111111222222222222211 1
Q ss_pred hcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008719 327 TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYA 406 (556)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~ 406 (556)
+.+.. ..+.+.....+..++..++..++.||+.+| ++.+.++..+.+++...+.....
T Consensus 228 g~~~~------~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~----------~~~~~~~~~~~~~~~~~~~~~~~------ 285 (355)
T TIGR00896 228 GASAA------TAGSLLALMQLAQAASALLIPALARRVKDQ----------RGIVAVLAVLQLVGLCGLLFAPM------ 285 (355)
T ss_pred CCCHH------HHHHHHHHHHHHHHHHHHhHHHHHhhhccc----------hHHHHHHHHHHHHHHHHHHHhhh------
Confidence 21111 122334444555666666666666655322 12345566666666555443321
Q ss_pred hccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc-CchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 407 ISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA-PDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
...+ ...++.|++.+...|...+.+.+.. +++.++..+++.+....++..+++.+.+.+.+
T Consensus 286 ----------------~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 286 ----------------HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred ----------------hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1346778999888888777776554 46778999999998889999999999999887
Q ss_pred ccC
Q 008719 486 VTG 488 (556)
Q Consensus 486 ~~~ 488 (556)
..|
T Consensus 348 ~~g 350 (355)
T TIGR00896 348 ISG 350 (355)
T ss_pred Hhc
Confidence 655
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=205.62 Aligned_cols=137 Identities=16% Similarity=0.099 Sum_probs=114.9
Q ss_pred hhHHhHHHHHHHhhCCCh--hhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 9 GLSVNMVTFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
++...+..++.+.++.+. ...+++.+++.++..++++++|+++|| +|||++++++.++.+++.++..++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~~~~~~~~~~~~------ 99 (1146)
T PRK08633 27 GHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEVGLTLLIVLAYY------ 99 (1146)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 344445556666666654 346899999999999999999999999 89999999998877766666554421
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
..+++.++++|+++|++.+...|+..++++|.+++++ |++++++.....++|.++
T Consensus 100 -------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~l 154 (1146)
T PRK08633 100 -------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILA 154 (1146)
T ss_pred -------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHH
Confidence 0357889999999999999999999999999999988 999999999999999999
Q ss_pred HHHHHHHhhcc
Q 008719 167 AFTLVVYIQME 177 (556)
Q Consensus 167 g~~i~~~l~~~ 177 (556)
|+.+++++...
T Consensus 155 g~~l~~~l~~~ 165 (1146)
T PRK08633 155 GTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-18 Score=184.52 Aligned_cols=335 Identities=16% Similarity=0.082 Sum_probs=223.0
Q ss_pred HHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccc
Q 008719 19 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 98 (556)
Q Consensus 19 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (556)
..++.-|+...+.+..+..+...+..+++|.++|| +.|||+++.+-++..+..+.+++.....
T Consensus 37 v~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~~~L~~l~~~~---------------- 99 (524)
T PF05977_consen 37 VTQLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVALLLAVLAFFG---------------- 99 (524)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHHHhC----------------
Confidence 34577889999999999999999999999999999 8999999999998877766666543211
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008719 99 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 178 (556)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~ 178 (556)
..+.+.+++.-++.|++.+...|+-.+++.+..|+++ ..++.++.....|+.-++||.++|.+....
T Consensus 100 -------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~ 166 (524)
T PF05977_consen 100 -------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFF 166 (524)
T ss_pred -------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 1466888899999999999999999999999999888 999999999999999999999999999889
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCCCccc
Q 008719 179 GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIA 258 (556)
Q Consensus 179 gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 258 (556)
|-.++|++.++..++++..+...+++.+.+ +.+.....+.+...++
T Consensus 167 G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~e~~~~~l~~G~r------------------------------- 212 (524)
T PF05977_consen 167 GAAAAFLINALSFLISILALLRWKPPPPPS---SLPRERFFSALREGLR------------------------------- 212 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccc---ccchhhhhhhHHHHHH-------------------------------
Confidence 999999999988776655544433321111 1110001000000000
Q ss_pred cCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhccccccccccc
Q 008719 259 HTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 338 (556)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (556)
+. ..+ ...+..+ ....++..+....... ...+..+..+.+.. .
T Consensus 213 --------------yv------------~~~--~~l~~~l--~~~~~~~l~~~a~~aL-lPl~a~~~l~~~a~------~ 255 (524)
T PF05977_consen 213 --------------YV------------RSS--PPLRSVL--LRSFLFNLFASAVWAL-LPLFARDVLGGGAS------G 255 (524)
T ss_pred --------------HH------------hcc--hHHHHHH--HHHHHHHHhhhHHHHh-hhHHHHHHhCCcHH------H
Confidence 00 000 0111111 0011111111111111 11222222211111 1
Q ss_pred CCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCc
Q 008719 339 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418 (556)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (556)
-+.+.....++.++...+.. ++.+| .+..+.+..+.++.+++++.++...
T Consensus 256 yGll~a~~gvGai~Gal~~~----~l~~~-------~~~~~lv~~~~~~~a~~~~~lal~~------------------- 305 (524)
T PF05977_consen 256 YGLLLAAFGVGAILGALLLP----RLRRR-------LSSRRLVLLASLLFALALLLLALSP------------------- 305 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH----Hhhcc-------cCcchhhHHHHHHHHHHHHHHhcch-------------------
Confidence 12233333444444443333 33333 2333456667777777766665542
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccC
Q 008719 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 488 (556)
Q Consensus 419 ~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~ 488 (556)
+.+...+..++.|++....+...++...+.+|+++||++++++++....+..+|..+.|.+.+..|
T Consensus 306 ----~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 306 ----SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 556667788899999999999999999999999999999999999999999999999999887544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-19 Score=185.22 Aligned_cols=152 Identities=17% Similarity=0.094 Sum_probs=127.9
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
.+.+.+.+.++.++++++|+|..+.+++.+.+.++..++.+++|+++|| +|||+.+.++.++..++.++++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~~~~~~------ 87 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCLWAGLA------ 87 (366)
T ss_pred HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHH------
Confidence 3445566666667999999999999999999999999999999999999 899999999999999999888876
Q ss_pred CCCCCCccccccccCCCCCccch-hHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
. +.+.+++.|+++|++.+.. +...++++|++|+++ |+++.++.....++|
T Consensus 88 ----------------------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g 138 (366)
T TIGR00886 88 ----------------------VQSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMG 138 (366)
T ss_pred ----------------------hhhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHH
Confidence 4 6788999999999996654 567889999999887 999999999888889
Q ss_pred HHHHHHHHHHhhc----------ccchhHHH-HHHHHHHH
Q 008719 164 AIVAFTLVVYIQM----------EHGWGSAF-GALAIAMG 192 (556)
Q Consensus 164 ~~~g~~i~~~l~~----------~~gw~~~f-~i~~~~~~ 192 (556)
..+++.+++.+.. +.+||+.| ++.++...
T Consensus 139 ~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 178 (366)
T TIGR00886 139 GGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL 178 (366)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence 8888888776654 34899999 44344433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=208.00 Aligned_cols=341 Identities=13% Similarity=0.013 Sum_probs=195.8
Q ss_pred hhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHH--HHHHHHHHHHhhhccccCCCCCCccccccccCCCCCc
Q 008719 27 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI--YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 104 (556)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (556)
...++..+++.+.+.++++++|+++|| +|||+++...... ...+..+.+...
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~------------------------- 105 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL------------------------- 105 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 346778888999999999999999999 8999976432222 222222222210
Q ss_pred cchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 008719 105 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 184 (556)
Q Consensus 105 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~gw~~~f 184 (556)
.+++.++++|+++|++.+...|+..+++.+.+++++ |++++++...+.++|.++||.++|++....+|++.|
T Consensus 106 --~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~ 177 (1140)
T PRK06814 106 --NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILV 177 (1140)
T ss_pred --hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 467899999999999999999999999999999988 999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCCCccccCCchh
Q 008719 185 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFR 264 (556)
Q Consensus 185 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 264 (556)
++..+..++++++.+...+. +..++..+...... .+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------------------------------------~~ 213 (1140)
T PRK06814 178 ALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNII-------------------------------------------RS 213 (1140)
T ss_pred HHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccchH-------------------------------------------HH
Confidence 55544444443333332211 11100000000000 00
Q ss_pred HhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhh-hhhHHHHHHHHHHhhcchhHHHHhhhcccccccccccCCccc
Q 008719 265 CLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLV-PIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMP 343 (556)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (556)
..+. + ......+.+.... ........+.....+.+.+. .+..+.+. ...+.+.
T Consensus 214 ~~~~--------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~g~~~------~~~g~~~ 267 (1140)
T PRK06814 214 TITL--------------L-----KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA-KETLGGDE------NVATLFL 267 (1140)
T ss_pred HHHH--------------H-----HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHcCCch------HHHHHHH
Confidence 0000 0 0000011111111 11111111222222222222 21111111 1123334
Q ss_pred ccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcch
Q 008719 344 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 423 (556)
Q Consensus 344 ~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (556)
....++.++...+..++.++..++ ..+..+.++.+++.+.+............+-...... ... .+
T Consensus 268 ~~~~~g~~ig~~~~g~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~ 333 (1140)
T PRK06814 268 AVFSVGVAVGSFLASKLSEGRITL-----------LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVF--LSK-RH 333 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhCCceee-----------eeehHHHHHHHHHHHHHHhcccccccccccccchhhh--hcc-cc
Confidence 444555555555555544332221 1133333333333332222100000000000000000 000 14
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 424 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 424 ~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
.+.+++..++.|++.++.++..++++.+.+|++.||+++|+.++...+|..+++.+.+.+.+
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888999999999999999999999999999999999999999999999888754
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-18 Score=180.24 Aligned_cols=360 Identities=7% Similarity=-0.073 Sum_probs=225.6
Q ss_pred HHHHHH-hhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 15 VTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 15 ~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
...+.+ ++|+|.+|.+++.+++.++..++.++.|+++|| +|.|+++.++.++..+.+.+++++.. |
T Consensus 57 ~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i~~~~~~~a~~--------~---- 123 (462)
T PRK15034 57 TVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILIIPCVWLGIAVQ--------N---- 123 (462)
T ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHc--------c----
Confidence 345544 799999999999999999999999999999999 89999999999999998888886410 0
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
...+++.+++.|++.|++ |...+.....+++++|+++ |+++.++.....|+|..+++.+...
T Consensus 124 -----------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 124 -----------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred -----------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 014678999999999998 6688899999999999988 9999999987778888766665544
Q ss_pred hh-----c-------------ccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccc
Q 008719 174 IQ-----M-------------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSS 235 (556)
Q Consensus 174 l~-----~-------------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (556)
+. . ..+|+.++++..+..++..++.++..++.+. .+....+... ++|
T Consensus 186 ~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~~~~~~----vlk-------- 250 (462)
T PRK15034 186 VIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASIADQLP----VLQ-------- 250 (462)
T ss_pred HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCHHHHHH----HhC--------
Confidence 32 1 3347777777777666665555554332111 1111111000 000
Q ss_pred cccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHh
Q 008719 236 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILT 315 (556)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (556)
+.+........++....|.....
T Consensus 251 ---------------------------------------------------------~~~~Wllslly~~tFG~fvg~s~ 273 (462)
T PRK15034 251 ---------------------------------------------------------RLHLWLLSLLYLATFGSFIGFSA 273 (462)
T ss_pred ---------------------------------------------------------CCchhHHHHHHHHHHHHHHHHHH
Confidence 00011111111111112221211
Q ss_pred hcchhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 008719 316 EFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 395 (556)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~ 395 (556)
.++.++.. .++.. .......+.++...+..|+.+++.||.++| +.+.++.+.+.++....
T Consensus 274 ~lp~~~~~---~~~~~------~~l~~~~l~~l~~~l~rplgG~LADRiG~~-----------~vl~~~~i~~~i~~~~~ 333 (462)
T PRK15034 274 GFAMLAKT---QFPDV------NILRLAFFGPFIGAIARSVGGAISDKFGGV-----------RVTLINFIFMAIFSALL 333 (462)
T ss_pred HHHHHHHH---HcChH------HHHHHHHHHHHHHHHHHHhhHHHHHhcCch-----------HHHHHHHHHHHHHHHHH
Confidence 22222111 11100 111112223455677788999999887765 23455555444443322
Q ss_pred HHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCc--------------------
Q 008719 396 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-------------------- 455 (556)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~-------------------- 455 (556)
..... .. +..+.+.....++.+.++.++.+...+-++.+..|+
T Consensus 334 ~l~lp------~~-----------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~ 396 (462)
T PRK15034 334 FLTLP------GT-----------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREA 396 (462)
T ss_pred HHHhc------cc-----------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHH
Confidence 22210 00 002445455555555566666777777777777774
Q ss_pred -hhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008719 456 -AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR 531 (556)
Q Consensus 456 -~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~ 531 (556)
+..|.+.|+......+|+++.|.+.+...+.+| .+...|+.+.+..++++...|.++.|
T Consensus 397 ~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-----------------~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 397 VTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-----------------SPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-----------------CcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 257889999999999999999999888777555 13455777888888877777777654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=191.10 Aligned_cols=382 Identities=15% Similarity=0.070 Sum_probs=236.6
Q ss_pred HhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccC
Q 008719 20 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG 99 (556)
Q Consensus 20 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (556)
+..+.+........+.+.+|..+++++.|.++|| +|||++++++.++.+++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a--------------------- 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA--------------------- 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 5567788889999999999999999999999999 999999999999999999998887
Q ss_pred CCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 100 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 179 (556)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~g 179 (556)
.+++.+++.|++.|++.++...+...+++|.+++++ |+.+.++ ......++.+++.+++++.. +
T Consensus 169 -------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~ 232 (521)
T KOG0255|consen 169 -------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--D 232 (521)
T ss_pred -------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence 688999999999999999999999999999999998 9999999 77888888888888888876 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCCCcccc
Q 008719 180 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH 259 (556)
Q Consensus 180 w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 259 (556)
||+.+++..+..++.++..++ .+|+||| +..+++.+++.+..+++.+
T Consensus 233 Wr~~~~~~~~~~~~~~~~~~l--------------------------------~~Es~rw-l~~~g~~~~a~~~l~~~a~ 279 (521)
T KOG0255|consen 233 WRWLFWIISIPSGLFLLLWFL--------------------------------PPESPRW-LLSKGRIDEAIKILKKIAK 279 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--------------------------------cCcChHH-HHHcCchHHHHHHHHHHHh
Confidence 999999988776655554222 3577777 7777666666554444321
Q ss_pred -----CCchhHhHHHHhhhccCCCCCCC---CcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhcccc
Q 008719 260 -----TDDFRCLDKAALELKEDVINPSP---WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 331 (556)
Q Consensus 260 -----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (556)
....+..+..............+ +......+ +-++... ...+.|..+. ...+...++..
T Consensus 280 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~l~~~~~-------~~~~~~~~~~-----~~y~gl~~~~~ 346 (521)
T KOG0255|consen 280 LNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTP-RLRYRTL-------YLLFIWFVFS-----LVYYGLSLNVS 346 (521)
T ss_pred hcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCH-HHHHHHH-------HHHHHHHHHh-----HHHHhhhhhhh
Confidence 11111111110000000000000 00000000 0111111 1111111111 11111111111
Q ss_pred cccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCc
Q 008719 332 MGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGY 411 (556)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (556)
+.+......+......-...........++.+|| .....+.++.+++.++.++....
T Consensus 347 --~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~-----------~~~~~~~~~~~~~~~~~~~~~~~---------- 403 (521)
T KOG0255|consen 347 --GLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRR-----------PPLFLSLFLAGIGLLLFGWLPDD---------- 403 (521)
T ss_pred --hcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHhhcc----------
Confidence 0011111111111111112222222334444444 44677788888888877776421
Q ss_pred cccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCC
Q 008719 412 EFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPK 491 (556)
Q Consensus 412 ~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~ 491 (556)
...+...+...+...+...+....+.+..|..|+..|..+.+.......+|+.+++.+.........
T Consensus 404 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~--- 470 (521)
T KOG0255|consen 404 ----------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFP--- 470 (521)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---
Confidence 1111233334444555555666668999999999999999999999999999999988754322100
Q ss_pred CCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008719 492 KGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 537 (556)
Q Consensus 492 ~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~ 537 (556)
. ..+...+.+..+..+....+.++++...+
T Consensus 471 ----~------------~~~~~~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 471 ----L------------LGLILFGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred ----c------------chHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence 0 11222455666666666677888777654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-17 Score=178.77 Aligned_cols=369 Identities=11% Similarity=0.063 Sum_probs=221.1
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhccc-----chhHH-HHHHHHHHHHHHHHHHHhh
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-----GRYWT-IAIFTTIYLAGLTGITLCA 79 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-----Grr~~-~~~~~~~~~i~~~l~~~~~ 79 (556)
.++.....++.+++ +.|.|.++.+.. +..... .++.+++|.++|| + ||||. ++++.+...++..++++..
T Consensus 27 ~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~ 102 (491)
T PRK11010 27 PLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAAMGFLE 102 (491)
T ss_pred HHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 44455566777775 469999999986 333333 3689999999999 8 99986 5566666666666666641
Q ss_pred hccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHH
Q 008719 80 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 159 (556)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 159 (556)
|. .+.+.+.+.+++.+++.+...+...++..|++|+++ |+++.++...+
T Consensus 103 ------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g 151 (491)
T PRK11010 103 ------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLG 151 (491)
T ss_pred ------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHH
Confidence 11 467788889999999999999999999999999888 99999999999
Q ss_pred HHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccccc
Q 008719 160 VTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSEL 238 (556)
Q Consensus 160 ~~lG~~~g~~i~~~l~~-~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
.++|.++++.+++++.+ ..|||.+|++.++..++..+..+. .++.+..++.+++.
T Consensus 152 ~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~~----------------------- 207 (491)
T PRK11010 152 YRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPTDTIPVPKTL----------------------- 207 (491)
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccch-----------------------
Confidence 99999999999999988 579999999988776555444333 22211000000000
Q ss_pred ccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcc
Q 008719 239 IGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFL 318 (556)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (556)
. + +..+. ++ +..++.+..................+...+
T Consensus 208 -------------------~---~-~~~~~--------------l~----~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~ 246 (491)
T PRK11010 208 -------------------E---Q-AVVAP--------------LR----DFFGRNNAWLILLLIVLYKLGDAFAMSLTT 246 (491)
T ss_pred -------------------h---h-hHHHH--------------HH----HHHcCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00000 00 000000000001111111111112222222
Q ss_pred hhHHHHhhhcccccccccccCCccc-ccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008719 319 TLSVQQAYTMNTHMGKLKLPVTCMP-VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGI 397 (556)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~ 397 (556)
.++.+ ..+.+.. ..+.+. ....+..++...+.+++.+|+++| +.+.++.++.+++.+....
T Consensus 247 ~~l~~-~~G~s~~------~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~-----------~~l~i~~~l~~l~~l~~~~ 308 (491)
T PRK11010 247 TFLIR-GVGFDAG------EVGLVNKTLGLLATIVGALYGGILMQRLSLF-----------RALMIFGILQGVSNAGYWL 308 (491)
T ss_pred HHHHH-hcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 22221 1222211 112222 122345556666677777776544 2233333333333322211
Q ss_pred HHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHH
Q 008719 398 FERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS 477 (556)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~ 477 (556)
.... . .+.+.+....++..+..++..+..+++..+.+|++.+++..|+.+....+|..+++
T Consensus 309 l~~~------------------~-~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~ 369 (491)
T PRK11010 309 LSIT------------------D-KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVG 369 (491)
T ss_pred HHhc------------------c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 1100 0 13333444455555555566677788888999999999999999999999999888
Q ss_pred HHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 008719 478 ILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA 529 (556)
Q Consensus 478 ~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~ 529 (556)
.+.|.+.+..| | ...|.+.+++++++++....+.
T Consensus 370 ~~~G~l~~~~G--------~----------~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 370 PVAGWFVEAHG--------W----------PTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHhC--------h----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 89998877433 3 4577878888877766665553
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-18 Score=176.12 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=121.6
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcc----cchhHHH-HHHHHHHHHHHHHHHHhhhcccc
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grr~~~-~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
+.....+.+.+++|+|.+|.++.... .+...+ .+++|.++||+ +||||.+ +.+.++.++...++++...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 34444444556899999999999655 344444 89999999994 2999974 5666666666555554310
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
..+.+.+....++.+++.+...+...+++.|.+|+++ |+++.++...+.++|.
T Consensus 80 ---------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~ 132 (356)
T TIGR00901 80 ---------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM 132 (356)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence 1355667777778889999999999999999998887 9999999999999999
Q ss_pred HHHHHHHHHhhcccc--------hhHHHHHHHHHHHHHHHHHHH
Q 008719 165 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 165 ~~g~~i~~~l~~~~g--------w~~~f~i~~~~~~~~~~~~~~ 200 (556)
++++.+++.+....+ ||.+|++.++..+++.+..++
T Consensus 133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888 999999988876665554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-17 Score=175.09 Aligned_cols=157 Identities=11% Similarity=0.056 Sum_probs=133.7
Q ss_pred hhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008719 9 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 88 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 88 (556)
++...+.+.+++++|.|..+.+++.+.+.++..++.+++|++.|| +|||+++.++.++++++.+++..++.
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~-------- 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAE-------- 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 455555677789999999999999999999999999999999999 89999999999999999887654421
Q ss_pred CCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 008719 89 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 168 (556)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 168 (556)
..+++.+++.|++.|+|.|...+..++++.+..|+++ |++..++.+...++|..+||
T Consensus 91 -----------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~ 147 (410)
T TIGR00885 91 -----------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGM 147 (410)
T ss_pred -----------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHH
Confidence 0467889999999999999999999999999988877 89999999999999999999
Q ss_pred HHHHHhhc--------------------------ccchhHHHHHHHHHHHHHHHH
Q 008719 169 TLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML 197 (556)
Q Consensus 169 ~i~~~l~~--------------------------~~gw~~~f~i~~~~~~~~~~~ 197 (556)
.+++.+.. ..+||++|++.++..++..++
T Consensus 148 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 148 VVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887742 246999998887765544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-16 Score=168.14 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=125.5
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhccc-----chhH-HHHHHHHHHHHHHHHHHHhhh
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-----GRYW-TIAIFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-----Grr~-~~~~~~~~~~i~~~l~~~~~~ 80 (556)
+.-....+|.|++ +.|+|.+|.|++...... .+..+++|+++|| + |||| .++++.++.+++..++++..
T Consensus 15 ~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~- 89 (402)
T PRK11902 15 LALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAAMAFCP- 89 (402)
T ss_pred HHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHHHHhcC-
Confidence 3334566788887 569999999999766665 6999999999999 7 8876 67777777877777766641
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
+ ..+.+.+++..++.++..+...|...+++.|.+|+++ |+++.++...+.
T Consensus 90 -----~-------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~ 139 (402)
T PRK11902 90 -----P-------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGY 139 (402)
T ss_pred -----c-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHH
Confidence 0 1356667777777888999999999999999999888 999999999999
Q ss_pred HHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHH
Q 008719 161 TVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML 197 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~-~gw~~~f~i~~~~~~~~~~~ 197 (556)
++|.++++.+++++.+. .|||.+|++.++..++..+.
T Consensus 140 ~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 140 RLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999988875 59999999988765554443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-17 Score=168.25 Aligned_cols=370 Identities=14% Similarity=0.068 Sum_probs=253.7
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
+...+.+++.+++|+|+.|.+++..+-.+...+..++-|.+.|| +|.|++..++.++..+-.+..+++...
T Consensus 32 l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~~IP~~~~~~a~~~-------- 102 (417)
T COG2223 32 LFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLLLIPCLGLAFAVTY-------- 102 (417)
T ss_pred HHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHHHHHHHHHHHHccC--------
Confidence 44556688889999999999999999999999999999999999 999999999999999999999887321
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
.+.+.+++.+++.|++.| ..++..++++.++|+++ ++.+.+++. ..|+|..+...
T Consensus 103 -----------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~ 157 (417)
T COG2223 103 -----------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQL 157 (417)
T ss_pred -----------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh------hhHHHHHhc-cccccHHHHHH
Confidence 344789999999999865 45888899999999998 999999999 89999999999
Q ss_pred HHHHhhcccc---hhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCC
Q 008719 170 LVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPG 246 (556)
Q Consensus 170 i~~~l~~~~g---w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (556)
++..+....+ |+.+..+..+..++..+..++..++.+...+..++... .-
T Consensus 158 ~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~------------------------- 210 (417)
T COG2223 158 VAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQ------------------------- 210 (417)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--hH-------------------------
Confidence 9999998888 99999988888887777766665543332221111000 00
Q ss_pred CCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHH-HHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHh
Q 008719 247 KHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVE-EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA 325 (556)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (556)
.+.+. +++.....+....+...+...-.+.+.++..+
T Consensus 211 -----------------------------------------~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~- 248 (417)
T COG2223 211 -----------------------------------------LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ- 248 (417)
T ss_pred -----------------------------------------HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 00000 11111111112222222222222222222221
Q ss_pred hhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008719 326 YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY 405 (556)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~ 405 (556)
...+ ....+......++...+.-|+.+.+.||++.+ +...+.+..++++..........
T Consensus 249 fg~~------~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~-----------rv~~~~f~~~~~~~~~l~~~~~~---- 307 (417)
T COG2223 249 FGLS------PVTAGLIAFLFPLIGALARPLGGWLSDRIGGR-----------RVTLAVFVGMALAAALLSLFLTG---- 307 (417)
T ss_pred cCCC------hhhHHHHHHHHHHHHHHHHhccchhhhhccch-----------hHHHHHHHHHHHHHHHHHccccc----
Confidence 1222 22333555566777788888888888887655 33556666666666665544310
Q ss_pred hhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 406 AISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
..+ + .+....+..++...+..++.+-..+.++....|+ +-|.+.|+......+|++.-|...+...+
T Consensus 308 -~~~----------~-~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~ 374 (417)
T COG2223 308 -FGH----------G-GSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLD 374 (417)
T ss_pred -ccc----------C-cchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHH
Confidence 000 0 1333334444555555556666677777777765 56889999999999999999999998887
Q ss_pred ccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008719 486 VTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 533 (556)
Q Consensus 486 ~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~ 533 (556)
.+| .+...|+++..+.+++....+....+++
T Consensus 375 ~tg-----------------~~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 375 LTG-----------------SYTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred hcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 655 2356789999999988888877766543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-15 Score=162.43 Aligned_cols=431 Identities=12% Similarity=0.023 Sum_probs=244.4
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhc---ccchhHHHHHH-HHHHHHHHHHHHHhh
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA---YLGRYWTIAIF-TTIYLAGLTGITLCA 79 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~---~~Grr~~~~~~-~~~~~i~~~l~~~~~ 79 (556)
++++-...+++++|+ +++|.+..+++++..+..+...+.+|+.|+++|| .+||||.++++ .....++..+++.+.
T Consensus 17 q~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~ 95 (477)
T TIGR01301 17 QFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAA 95 (477)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCc
Confidence 345555566777776 5799999999999999999999999999999993 28999998875 555556666666542
Q ss_pred hccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHH
Q 008719 80 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 159 (556)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 159 (556)
..... +.++. .+..+....+.+.++..+..++.....+...++++|.+|+++++ ++.+.++....
T Consensus 96 ~~~~~-----~~~~~------~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~ 160 (477)
T TIGR01301 96 DIGHL-----FGDNL------DKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFF 160 (477)
T ss_pred hhhhh-----ccccc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHH
Confidence 11000 00000 00011122244455555666788888888899999999987621 36899999999
Q ss_pred HHHHHHHHHHHHHHh--hccc-------------chhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHH
Q 008719 160 VTVGAIVAFTLVVYI--QMEH-------------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA 224 (556)
Q Consensus 160 ~~lG~~~g~~i~~~l--~~~~-------------gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (556)
.++|.++|+.+++.. .+.. +.+++|++.++..+++.++..+..++.+..++++.+.
T Consensus 161 ~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~--------- 231 (477)
T TIGR01301 161 MAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN--------- 231 (477)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh---------
Confidence 999999999998865 2211 5688999988887777766666555432211110000
Q ss_pred HHhhccccccccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhh
Q 008719 225 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIP 304 (556)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (556)
. .+++ ..++..+..+.+. + +.-.+--|.+.+.+...
T Consensus 232 ---------~------~~~~-----------~~~~~~~~~~~~i--------------~----~~~~~mP~~m~~l~~vq 267 (477)
T TIGR01301 232 ---------S------EAAP-----------PSKHGEEAFFGEL--------------F----GAFKYLPRPVWILLLVT 267 (477)
T ss_pred ---------h------hccc-----------ccccchhhhHHHH--------------H----HHHHHCCHHHHHHHHHH
Confidence 0 0000 0000000000000 0 00000011222222222
Q ss_pred HHHHHHHHHHhhcchhHHHHh-hhcccccc-cc--ccc-CCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHH
Q 008719 305 ACTIMLNVILTEFLTLSVQQA-YTMNTHMG-KL--KLP-VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQ 379 (556)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~--~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~ 379 (556)
.+.-+-|..+..+.|.+..+. .+-+..-. .. +.. ..+-...+.+...+... +..++.||... ++.
T Consensus 268 ffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~----~l~~l~~~~g~------~k~ 337 (477)
T TIGR01301 268 CLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSI----GMEKLCRGWGA------GKR 337 (477)
T ss_pred HHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcc------chh
Confidence 223333444455555544432 11111100 00 000 01111122222233333 33334444221 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCch-
Q 008719 380 RVGIGLAVSILSVIWAGIFERYRRN--YAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA- 456 (556)
Q Consensus 380 ~i~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~- 456 (556)
.-.++.++.++++....+......| ..+.++ .-..++. ...+.++..+.+.|+..+..+...++++.+..|++
T Consensus 338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~---~~~~~~~-~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~ 413 (477)
T TIGR01301 338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDG---ESLPPPT-GIKASALIVFAILGIPLAITYSIPFALASIRSSNLG 413 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccc---cccCcch-hhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccC
Confidence 2367777888888777665421000 000000 0000111 11366777889999999999999999999999964
Q ss_pred -hHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008719 457 -MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 533 (556)
Q Consensus 457 -~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~ 533 (556)
..|..+|+.|.+-.+...+.+...+.+.+..| + +..+.+.+.++..+++.+..+...|+.+
T Consensus 414 ~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g--~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 414 AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG--G--------------GNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC--C--------------CCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45999999999999999999988887655444 1 1124677788888888888777777644
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-17 Score=163.36 Aligned_cols=149 Identities=13% Similarity=0.075 Sum_probs=137.3
Q ss_pred hhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCC
Q 008719 21 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 100 (556)
Q Consensus 21 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (556)
+++-+.++.|++..++.+.+.+..++.|.+.|| +|+|-.+++|+++..+.++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 456677899999999999999999999999999 899999999999999999999997
Q ss_pred CCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 008719 101 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180 (556)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~gw 180 (556)
.+++++.++|.+||+|.+....+..++++|.+|++.+ |++++++.-....+|..+||..||.+.+..|+
T Consensus 157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 6788999999999999999999999999999998764 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Q 008719 181 GSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 181 ~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
+.+|++.+...++-..+.++..+
T Consensus 226 ~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 226 SAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHheeC
Confidence 99999999988877766655544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=164.61 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=98.5
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcc---cchhHHH-HHHHHHHHHHHHHHHHhh
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTIYLAGLTGITLCA 79 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~~-~~~~~~~~i~~~l~~~~~ 79 (556)
.+++..+.++++.|+++.+|++..++|.+.+...+...+..++.|+++||. +||||.+ +.+.+...+...++....
T Consensus 21 ~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~ 100 (448)
T PRK09848 21 NFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVP 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCc
Confidence 344555667788999999999999999999999999999999999999992 3777755 455554444443332110
Q ss_pred hccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHH
Q 008719 80 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 159 (556)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 159 (556)
....+ ......+++..++.+++.+...+...++..+..+++++ |.+..++..+.
T Consensus 101 --~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~r~~~ 154 (448)
T PRK09848 101 --TDWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAARGIA 154 (448)
T ss_pred --CCCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHHHHHH
Confidence 00000 12334455666778888999998888888887766432 66665555433
Q ss_pred -----HHHHHHHHHHHHHHh
Q 008719 160 -----VTVGAIVAFTLVVYI 174 (556)
Q Consensus 160 -----~~lG~~~g~~i~~~l 174 (556)
.++|..++|.+.+..
T Consensus 155 ~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 155 ASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 456666777666543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-15 Score=164.70 Aligned_cols=356 Identities=12% Similarity=0.057 Sum_probs=203.4
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhc---ccchh-HHHHHHHHHHHHHHHHHHHhh
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA---YLGRY-WTIAIFTTIYLAGLTGITLCA 79 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~---~~Grr-~~~~~~~~~~~i~~~l~~~~~ 79 (556)
.+.+..+.++++.|+++.+|++...+|.+..+..+.-.+..|+.|+++|| .+||| +.++++....++++.++...
T Consensus 19 ~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~- 97 (473)
T PRK10429 19 DFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA- 97 (473)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC-
Confidence 34455667788999999999999999999999999999999999999994 16984 55566766667666555432
Q ss_pred hccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHH
Q 008719 80 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 159 (556)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 159 (556)
|.. ++.....++++.-++.+++.........++..|..+++++ |.+..++....
T Consensus 98 --p~~-------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e-----R~~l~~~~~~~ 151 (473)
T PRK10429 98 --HLF-------------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE-----REQLVPYPRFF 151 (473)
T ss_pred --CCC-------------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH-----HHHHHHHHHHH
Confidence 111 0112445566666677888888888999999999854332 89988887777
Q ss_pred HHHHHHHHHHHHHHhhc-------ccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccc
Q 008719 160 VTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAA 232 (556)
Q Consensus 160 ~~lG~~~g~~i~~~l~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (556)
.++|..+++.+...+.. ..+|+....+.++...++.+..+...++... ++..++
T Consensus 152 ~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~~------------------ 212 (473)
T PRK10429 152 ASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS-SDNQVS------------------ 212 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC-cccccc------------------
Confidence 78876666555443321 1246666665555544444333332222110 000000
Q ss_pred ccccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHH
Q 008719 233 FSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNV 312 (556)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (556)
+ +.+..++.+... .....|.+...+ ......+.
T Consensus 213 ---------------~----------~~~~~~~~~~~~-------------------~~~~n~~~~~ll---~~~~~~~~ 245 (473)
T PRK10429 213 ---------------A----------EGSHLTLKDIVA-------------------LIYKNDQLSCLL---GMALAYNI 245 (473)
T ss_pred ---------------c----------cccCCCHHHHHH-------------------HHhcCHHHHHHH---HHHHHHHH
Confidence 0 000000000000 000112222111 11111111
Q ss_pred HHhh---cchhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHH
Q 008719 313 ILTE---FLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI 389 (556)
Q Consensus 313 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~ 389 (556)
.... ...++..+... +. . ..+.+..+..+..++..++..++.+|+++| +.+.++.++..
T Consensus 246 ~~~~~~~~~~y~~~y~~~-~~-----~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----------~~~~~~~~~~~ 307 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIG-DA-----D-LFPYYLSYAGAANLVTLILFPRLVKSLSRR-----------ILWAGASIFPV 307 (473)
T ss_pred HHHHHhhheeeEEEEECC-CH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHH
Confidence 1111 11111111110 00 1 011223334455566666666666555544 33445555544
Q ss_pred HHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcC-------chhHHHHH
Q 008719 390 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGS 462 (556)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~ 462 (556)
++.+........ + + .+.+.+++..++.+++.+...+..+++..+.+| .+..|...
T Consensus 308 ~~~~~~~~~~~~----------------~-~-~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~ 369 (473)
T PRK10429 308 LSCGVLLLMGLA----------------A-P-HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAY 369 (473)
T ss_pred HHHHHHHHHhcc----------------C-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHH
Confidence 444333221000 0 1 134455666778889999999999999998877 34467789
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhccC
Q 008719 463 AYAALAGGLGCFAASILNSIIKSVTG 488 (556)
Q Consensus 463 gl~~~~~~ig~~lg~~l~~~i~~~~~ 488 (556)
|+.++...+|..+++.+.+.+.+..|
T Consensus 370 s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 370 SVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998887655
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=160.48 Aligned_cols=153 Identities=13% Similarity=0.050 Sum_probs=135.0
Q ss_pred HHhHHHHHHHhhCCChhh-HhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 11 SVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~-~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
.+++.+|+.+++|+|+.| .|.+.++|..++.++.+++|+++|| +|-|+++.++.+..++..++.+++
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa----------- 112 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLG----------- 112 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 345678999999999999 9999999999999999999999999 899999999999999999999986
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
.+...+.+.|++.|++.|... +...++..++|+++ |+++.+++..+.++|.++++.
T Consensus 113 -----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~ 168 (511)
T TIGR00806 113 -----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSV 168 (511)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999 99999999999988 999999999999999999999
Q ss_pred HHHHhhcccchhHHHHH---HHHHHHHHHHHHHH
Q 008719 170 LVVYIQMEHGWGSAFGA---LAIAMGISNMLFFI 200 (556)
Q Consensus 170 i~~~l~~~~gw~~~f~i---~~~~~~~~~~~~~~ 200 (556)
+++++ ..+||++-+.+ +.....+++++.++
T Consensus 169 L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 169 LGQLL-VTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99994 46788876644 34444455554444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-17 Score=165.85 Aligned_cols=403 Identities=13% Similarity=0.044 Sum_probs=221.4
Q ss_pred CChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCC
Q 008719 24 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 103 (556)
Q Consensus 24 ~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (556)
.++.-.+.+..+..++..+++++.||++|+ +|||+++...+++..+++++++++ +|.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s---------------------~~~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLS---------------------VGTT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccC---------------------CCCC
Confidence 445667788888999999999999999999 999999999999999999966664 1222
Q ss_pred ccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhhc---
Q 008719 104 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV----VYIQM--- 176 (556)
Q Consensus 104 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~----~~l~~--- 176 (556)
+...-+.++++.|++.|+|.|+-+|...+..+|...++. |+...+....+...|...|..++ +-.-.
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 222456889999999999999999999999999988877 88877665555555554444332 22211
Q ss_pred --------ccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccccccc-ccccCCC
Q 008719 177 --------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG-LYEVPGK 247 (556)
Q Consensus 177 --------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 247 (556)
..=||..|.+.++..++.+. +..+ +||++++- +.+ .+.
T Consensus 213 ~~~~~~~ld~vWRl~~glg~vpa~~~ly---~Rl~-----------------------------M~Et~~Y~al~~-~~~ 259 (538)
T KOG0252|consen 213 GPSTYPHLDGVWRIIFGLGAVPALLVLY---FRLK-----------------------------MPETARYTALVS-KKL 259 (538)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHH---hhhc-----------------------------CCcchhHHHHhh-cCH
Confidence 12399998887766443332 2211 22222110 000 000
Q ss_pred CccccCCCccccCCchhHhHHHHhhhccCCCCCCCC-cccchhhHH-HHHhhhhhhhhhHHHHHHHHHHhhcch--hHHH
Q 008719 248 HSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPW-KLCTVTQVE-EVKTLVRLVPIPACTIMLNVILTEFLT--LSVQ 323 (556)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 323 (556)
+.+.++..+..+. +..+.... .+....+..+ ++..+...+ .-|++ +.....|++.=..+++ ++..
T Consensus 260 ~~a~~d~~k~~~~---~~~~~~~~--~~~~~~~~~~~~~F~~~f~~~hg~~L------lgt~~~WFllDiafy~~nL~~s 328 (538)
T KOG0252|consen 260 KQAAGDMKKVLSV---DIEAESTA--ESDVPPPSNSFGLFSRLFLRWHGKHL------LGTAGTWFLLDIAFYGQNLFQS 328 (538)
T ss_pred hhhhhcccccccc---ccchhhcc--ccCCCCcccccchHHHHHHHHHHHHH------HHHHHHHHhhhhhhhccccHHH
Confidence 0000000000000 00000000 0000000111 001111100 11111 2222223322211111 1111
Q ss_pred HhhhcccccccccccCCcccc------cchhHHHH----HHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHH
Q 008719 324 QAYTMNTHMGKLKLPVTCMPV------FPGLSIFL----ILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVI 393 (556)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l----~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~ 393 (556)
... + +++ +.-....+.. .+.+.... ..++...++|.++|+ ..-..|++++++-++
T Consensus 329 ~I~--~-~ig-~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-----------~iq~~GF~~~~i~~~ 393 (538)
T KOG0252|consen 329 VIF--S-AIG-VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-----------YIQLMGFFIMTIFFF 393 (538)
T ss_pred HHH--H-hhc-cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-----------HHHHhhHHHHHHHHH
Confidence 111 0 000 0000011100 11111111 222333444555554 446788888888877
Q ss_pred HHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHH
Q 008719 394 WAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGC 473 (556)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~ 473 (556)
.++..-.+ ..+ ....++..-+.+-+++-.-+.+...++.|..|.+.||+.-|++......|+
T Consensus 394 ~~~~~y~~---~~~---------------~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GA 455 (538)
T KOG0252|consen 394 VIAGPYNQ---LEN---------------TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGA 455 (538)
T ss_pred HHcCCccc---ccc---------------cCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchH
Confidence 77655321 011 111122222334456666777788889999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCchh
Q 008719 474 FAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYE 545 (556)
Q Consensus 474 ~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~ 545 (556)
.+|........+. + .|... ...+.+++++.+++++.++.+++ +|++++++||++++.+
T Consensus 456 ivg~~~F~~~t~~---------~-yp~~~---g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 456 IVGAFGFLYLTDH---------N-YPPNI---GVRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISNEEE 513 (538)
T ss_pred HHHHHHhhHhhhc---------c-CCccc---cchHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcChhh
Confidence 9999888877651 1 11111 13467899999999887765544 5999999888766544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=159.09 Aligned_cols=154 Identities=12% Similarity=0.012 Sum_probs=124.6
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
+.+-+...+|.+..|...+......+..+++..+|.++|+ +||||.+........+.-.+-+.+
T Consensus 100 i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~s--------------- 163 (528)
T KOG0253|consen 100 ILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGAS--------------- 163 (528)
T ss_pred HHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCC---------------
Confidence 3455566789999999999999999999999999999999 999999887766655444444443
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
.|+..+++.|.+.|+|.|+ .|...++..|..|..+ |....-.. .-..+|.+....+.-.
T Consensus 164 -------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~ 222 (528)
T KOG0253|consen 164 -------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWG 222 (528)
T ss_pred -------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHH
Confidence 4778899999999999999 8999999999999877 77766666 6678999988888777
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 174 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 174 l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
+..++||||.....++...+.....++....
T Consensus 223 vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ES 253 (528)
T KOG0253|consen 223 VMSNFGWRYLLFTSSTPLMFAARFLVWVYES 253 (528)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHhhcccC
Confidence 7888999999888887666555555554443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-15 Score=159.83 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=122.4
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 92 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (556)
....++.+++|-+ ....|+.+...++..+..++.|.|+|. ||||+.++.+.++..+|.+.++-+
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA-------------- 128 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATA-------------- 128 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcC--------------
Confidence 3446788889876 567899999999999999999999999 999999999999999999999987
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008719 93 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 172 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~ 172 (556)
++...++.+..+.|+|.|.... ....++|..|.+. |.....+.....-.....++.++.
T Consensus 129 --------------~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~ 187 (599)
T PF06609_consen 129 --------------QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQ 187 (599)
T ss_pred --------------CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHH
Confidence 6888999999999999877754 4556899999877 877777666655555556777777
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHHH
Q 008719 173 YIQMEHGWGSAFGALAIAMGISNMLF 198 (556)
Q Consensus 173 ~l~~~~gw~~~f~i~~~~~~~~~~~~ 198 (556)
.+..+.+|||.|++.++...++++..
T Consensus 188 ~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 188 LFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HhccCCCcchHHHHHHHHHHHHHHHH
Confidence 67666789999999888766655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=170.15 Aligned_cols=190 Identities=17% Similarity=0.127 Sum_probs=145.9
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC-
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM- 85 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~- 85 (556)
+.++.......+++.++++..+.|++.+.+.++..++.++.|+++|| +||||.+.++.+++++|.+++++..+.....
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~ 126 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYS 126 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChHHhcCCcc
Confidence 34566666678888999999999999999999999999999999999 8999999999999999999988753221100
Q ss_pred -------------CCCCCcccccc--c-----cCCCCCcc--chhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCc
Q 008719 86 -------------PNQDNCDRISQ--L-----LGSCEPAK--SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 143 (556)
Q Consensus 86 -------------~~~~~~~~~~~--~-----~~~~~~~~--~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 143 (556)
.+++.|...+. . ...|+..+ +..+..++++|+++|+|.+...+...+++.|.+|+++
T Consensus 127 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~- 205 (633)
T TIGR00805 127 YSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN- 205 (633)
T ss_pred ccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccc-
Confidence 01223321100 0 00123222 1245678899999999999999999999999999988
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------chhHHHHHHHHHHHHHHHHHHHh
Q 008719 144 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GWGSAFGALAIAMGISNMLFFIG 201 (556)
Q Consensus 144 ~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~----------------------gw~~~f~i~~~~~~~~~~~~~~~ 201 (556)
|++.+++++....+|.++|+++++++.+.+ +|+..|++.++..++..+.++..
T Consensus 206 -----~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 206 -----SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred -----cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999887532 27888988887766655544444
Q ss_pred cc
Q 008719 202 TP 203 (556)
Q Consensus 202 ~~ 203 (556)
.+
T Consensus 281 p~ 282 (633)
T TIGR00805 281 PK 282 (633)
T ss_pred cc
Confidence 33
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=165.12 Aligned_cols=363 Identities=12% Similarity=0.060 Sum_probs=206.5
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccc-----hhHHHHHHHHHHH-HHHHHHHHhhhc
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTTIYL-AGLTGITLCATM 81 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rr~~~~~~~~~~~-i~~~l~~~~~~~ 81 (556)
+.+...+..++++++|+|.++.+...+...+...+-++ +|.++|| ++ ||+.++++.++.. +....++..
T Consensus 42 ~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~--- 116 (468)
T TIGR00788 42 GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGLLGSAILYGLLPGK--- 116 (468)
T ss_pred HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHHHHHHHHHHhcccc---
Confidence 44556677888889999999999999999888888666 9999999 66 6666676665542 222211111
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
+ .......+.+++.+++.+...++..++..|..+ ++++. ++...++.+...+
T Consensus 117 ----~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~---~~~~~s~~~~~~~ 168 (468)
T TIGR00788 117 ----V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA---GPSLVSWMWGASA 168 (468)
T ss_pred ----c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc---CCCeeeHHHHHHH
Confidence 0 123344457889999999999999999999998 43221 4556677777888
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccc-ccCCCCCchhHHHHHHHHHHhhcccccccccccc
Q 008719 162 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR-HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIG 240 (556)
Q Consensus 162 lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
+|.++|+.++|.+.++++|+..|++.+...++..+...+. ++.+ ...|...+...
T Consensus 169 ~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~-~E~~~~~~~~~~~~~~----------------------- 224 (468)
T TIGR00788 169 TGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS-KERRAFVRPRIGTYLE----------------------- 224 (468)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc-ccccccccccccccch-----------------------
Confidence 9999999999999999999999999887766664433333 2211 01111000000
Q ss_pred ccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHH-Hhhcch
Q 008719 241 LYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVI-LTEFLT 319 (556)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 319 (556)
.++. .. .....+.. +++..+.+..++.-.+.. ...+... +...++
T Consensus 225 ~~~~-------------~~--~~~~~~~~------------------~~~~~~l~~~l~~~~i~~-~l~fifl~~~~~~~ 270 (468)
T TIGR00788 225 MNMA-------------LL--TLGVLANV------------------KVQILGLRGAIQLLEIAK-PLIFIFLSYANLPG 270 (468)
T ss_pred hhhh-------------hh--hhhHHHHH------------------HHHHHHHHHHHhcHHHHH-HHHHHHHHHhhcCC
Confidence 0000 00 00000000 000001111110000000 0011111 112222
Q ss_pred hHHHHhhhcccccccccccCCc---ccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 008719 320 LSVQQAYTMNTHMGKLKLPVTC---MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAG 396 (556)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~ 396 (556)
....... .+.. ..+.++.. +.....+..++...+.. ++.+| .+.++.+.++.++.+++.....
T Consensus 271 ~~~~~f~-~~~~--~lG~s~~~~G~~~~~~~v~~i~g~~~~~----~~~~~-------~~~r~~l~~~~~l~~~~~~~~~ 336 (468)
T TIGR00788 271 ASGSVFC-ATTQ--CLPGGPSFSGMSKVVGNLGSLCGVGGYD----RFLKT-------FPYRLLFGVTTLLYTLSSLFDL 336 (468)
T ss_pred CCceeEE-EEcc--cCCCCcchhhhHHHHHHHHHHHHHHHHH----HHHhh-------CCHHHHHHHHHHHHHHHHhCce
Confidence 1000000 0000 01222222 22233333344444433 33344 4555667777777666553322
Q ss_pred HHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHH
Q 008719 397 IFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA 476 (556)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg 476 (556)
.... +-+ ...+ .+ +.+++....++.+++.++...+...++.+.+|++.+|+..|+.+...++|..++
T Consensus 337 ~l~~-~~~--~~~g--------i~--~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~ 403 (468)
T TIGR00788 337 ILVK-RWN--LAFG--------IS--DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVS 403 (468)
T ss_pred eeee-ccc--cccC--------CC--CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHH
Confidence 1110 000 0000 01 223444556778888888999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccC
Q 008719 477 SILNSIIKSVTG 488 (556)
Q Consensus 477 ~~l~~~i~~~~~ 488 (556)
+.+.+.+.+..|
T Consensus 404 ~~~gg~l~~~~g 415 (468)
T TIGR00788 404 GFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHcC
Confidence 998888877544
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-14 Score=151.99 Aligned_cols=165 Identities=13% Similarity=-0.011 Sum_probs=113.7
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHH--HHHHHHHHHHHhhHH-HHhhhcccchhHHHHHHHHHHHH-HHHHHHHhhh
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIYLA-GLTGITLCAT 80 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~--~~~~~~~~~~~~~~~-G~laD~~~Grr~~~~~~~~~~~i-~~~l~~~~~~ 80 (556)
+.+.-..+.++.|++ +.|.|.++.|.+ .........+.+|+. ++.+|| +||||.++++..+... ....++..
T Consensus 15 ~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~~~~-- 90 (390)
T TIGR02718 15 IPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASLALV-- 90 (390)
T ss_pred hHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHHHcC--
Confidence 334455677788876 579999999997 455677777777777 568999 8999997666533221 22222211
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
.+. .....++....++.++..+...+...++..|..++++ ++...+...++.
T Consensus 91 ~~~----------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~ 142 (390)
T TIGR02718 91 GPD----------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGV 142 (390)
T ss_pred Ccc----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHH
Confidence 000 0122344445555667777777888888778777666 777777787888
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 008719 161 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 201 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~ 201 (556)
.+|.++|+.+.+++.+++|||.+|++.++..++..+..+..
T Consensus 143 ~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 143 MIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999888999999999999999888766555554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-15 Score=158.20 Aligned_cols=166 Identities=10% Similarity=0.070 Sum_probs=118.9
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcc---cchhH-HHHHHHHHHHHHHHHHHHhhhcc
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~-~~~~~~~~~~i~~~l~~~~~~~~ 82 (556)
+..+..+++.|+++++|++..++|.+..+..+.-.+..|+.|+++||. +|||| .++.+.+..++...++... |
T Consensus 25 ~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~---p 101 (444)
T PRK09669 25 WQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT---P 101 (444)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC---C
Confidence 445567788999999999999999999999999999999999999992 57754 4556666666665544432 2
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 162 (556)
..++ .....++++..++.+++.........++.+|..+++++ |.+..++.....++
T Consensus 102 ~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~l~~~r~~~~~~ 157 (444)
T PRK09669 102 DFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHSLQSWRFALSFI 157 (444)
T ss_pred CCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHHHHHHHHHHHHH
Confidence 1111 13456677777777777777777788999998855432 88888888888888
Q ss_pred HHHHHHHHHHHhhc-------ccchhHHHHHHHHHHHHHHHHHH
Q 008719 163 GAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFF 199 (556)
Q Consensus 163 G~~~g~~i~~~l~~-------~~gw~~~f~i~~~~~~~~~~~~~ 199 (556)
|..+++.+...+.. ..+|+..+.+.++...+..+..+
T Consensus 158 G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~ 201 (444)
T PRK09669 158 GGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF 201 (444)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 88888765443332 34688777777766555444333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-15 Score=160.20 Aligned_cols=347 Identities=12% Similarity=0.037 Sum_probs=226.2
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhh----cccchhHHHH-HHHHHHHHHHHHHHHhhhc
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIA-IFTTIYLAGLTGITLCATM 81 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Grr~~~~-~~~~~~~i~~~l~~~~~~~ 81 (556)
+.....++..|+++.+|+++..+|.+..+..+...+..|+.|+++| | +||||..+ ++..+.+++..++... .
T Consensus 17 ~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~llf~~--~ 93 (428)
T PF13347_consen 17 WSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLLFSP--P 93 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHhhcc--c
Confidence 3445567888999999999999999999999999999999999999 6 89776544 5777777777766643 0
Q ss_pred c-ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 82 K-VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
| ..+ ......++.+..++..++.........++..|..+++++ |.+..++.....
T Consensus 94 p~~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~ 149 (428)
T PF13347_consen 94 PAGLS-------------------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFS 149 (428)
T ss_pred cchhh-------------------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHH
Confidence 1 000 112344557777777999999999999999999986542 899999988888
Q ss_pred HHHHHHHHHHHHHhhccc-------chhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccc
Q 008719 161 TVGAIVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAF 233 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~-------gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (556)
++|.++...+.+.+.... +|++..++.++..+++.++.....|+.+.+.+++++....
T Consensus 150 ~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~--------------- 214 (428)
T PF13347_consen 150 MIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISL--------------- 214 (428)
T ss_pred HHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccccc---------------
Confidence 888876666665554321 6888888887776666666555444411111100000000
Q ss_pred cccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHH
Q 008719 234 SSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVI 313 (556)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (556)
...++... +.|...... ....+.+..
T Consensus 215 ----------------------------------------------~~~~~~~~-----~nr~~~~l~---~~~~~~~~~ 240 (428)
T PF13347_consen 215 ----------------------------------------------RDSLRSLF-----RNRPFRILL---LAFFLQWLA 240 (428)
T ss_pred ----------------------------------------------ccchhhhc-----ccchHHHHH---HHHHHHHhh
Confidence 00000000 011111111 111111121
Q ss_pred Hhh---cchhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHH
Q 008719 314 LTE---FLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 390 (556)
Q Consensus 314 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~ 390 (556)
... ...++.++..+.+ . ..+.+.....+..++..++..++.+|+++|. .+..+.++.++
T Consensus 241 ~~~~~~~~~y~~~~vl~~~-~------~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~-----------~~~~~~~~~~~ 302 (428)
T PF13347_consen 241 FALMNTFLPYYFTYVLGNE-G------LISIFMLIFFVASIVGSPLWGRLSKRFGKKK-----------VYIIGLLLAAL 302 (428)
T ss_pred hhhhhhHHHHHHHHHhcCc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHcccee-----------ehhhhHHHHHH
Confidence 111 1123333222221 1 1223334556667777788777777665553 36677777777
Q ss_pred HHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCc-------hhHHHHHH
Q 008719 391 SVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-------AMKSIGSA 463 (556)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~g 463 (556)
+.++..+... .+.+++++..++.|++.+...+..+++..+..+. +..|...|
T Consensus 303 ~~~~~~~~~~---------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 303 GFLLLFFLGP---------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHHh---------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 7777666541 2567788889999999999999999999998874 44699999
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhccC
Q 008719 464 YAALAGGLGCFAASILNSIIKSVTG 488 (556)
Q Consensus 464 l~~~~~~ig~~lg~~l~~~i~~~~~ 488 (556)
+.++...++..+++.+.+.+....|
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998876554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-14 Score=144.98 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=131.3
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 90 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 90 (556)
...+.+.+++.++++..|++.+..+|..++.++++..|++.+| +|+|+.+++|+.++++|+.+..=++.
T Consensus 32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~---------- 100 (422)
T COG0738 32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAAS---------- 100 (422)
T ss_pred chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhh----------
Confidence 4457789999999999999999999999999999999999999 89999999999999999998864432
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 91 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
...+..++++.++.|.|.+....+++++++...++++ -.+-+++......+|+++||++
T Consensus 101 ---------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~ 159 (422)
T COG0738 101 ---------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLL 159 (422)
T ss_pred ---------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHH
Confidence 1577899999999999999999999999999999876 5666777888889999999999
Q ss_pred HHHhhcc------------------c-chhHHHHHHHHHHHHHHHH
Q 008719 171 VVYIQME------------------H-GWGSAFGALAIAMGISNML 197 (556)
Q Consensus 171 ~~~l~~~------------------~-gw~~~f~i~~~~~~~~~~~ 197 (556)
++++..+ . .|+.+|.+.+....+..+.
T Consensus 160 g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~ 205 (422)
T COG0738 160 GSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVL 205 (422)
T ss_pred HHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9988763 1 2677777666554443333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-15 Score=150.58 Aligned_cols=133 Identities=15% Similarity=0.075 Sum_probs=111.7
Q ss_pred hhhHHhHHHHHHHhhC----CChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 8 FGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg----~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
|.+..++.-.+....| .+..-+|.+-+.|.+.+.+.++++|.++|| +|||.++++|.+..++.+.+.+.+
T Consensus 45 ~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S----- 118 (451)
T KOG2615|consen 45 YPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALS----- 118 (451)
T ss_pred hHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444444444433333 233567899999999999999999999999 799999999999999988888886
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
.++..+.++|++.|+.-|-. ....++++|..++++ |+.+++.......+|
T Consensus 119 -----------------------~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lG 168 (451)
T KOG2615|consen 119 -----------------------RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLG 168 (451)
T ss_pred -----------------------HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcc
Confidence 67777778899999999876 567899999999988 999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 008719 164 AIVAFTLVVYIQM 176 (556)
Q Consensus 164 ~~~g~~i~~~l~~ 176 (556)
.++||.+||++..
T Consensus 169 filGPmIGgyla~ 181 (451)
T KOG2615|consen 169 FILGPMIGGYLAQ 181 (451)
T ss_pred hhhcchhhhHHHh
Confidence 9999999999987
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.9e-15 Score=159.65 Aligned_cols=401 Identities=14% Similarity=0.075 Sum_probs=243.9
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
+-..+++++|.+..+++|+.++......++.|+.+.+.|| +|.|.+.++|.++.++|.++.+++
T Consensus 68 ~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~~lssF~--------------- 131 (509)
T KOG2504|consen 68 LFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGLLLSSFA--------------- 131 (509)
T ss_pred hHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHH---------------
Confidence 4456678899999999999999999999999999999999 899999999999999999999998
Q ss_pred cccccCCCCCccchhHHHHH-HHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLY-TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 172 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~ 172 (556)
++.+.++ ..=++.|+|.|+.+......++.+|+++ |+.+.++......+|.++=|.+..
T Consensus 132 -------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~GsG~G~~~~~~l~~ 191 (509)
T KOG2504|consen 132 -------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVSGTGVGTVVFPPLLK 191 (509)
T ss_pred -------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhccCCcceeeHHHHHH
Confidence 5666555 4456699999999999999999888643 899999988888999998898999
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCcccc
Q 008719 173 YIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIK 252 (556)
Q Consensus 173 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (556)
++.+.+|||..+++.+...+-..+.....+|.....++. ...+... ... -.++..- ..+ .+...+
T Consensus 192 ~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--------~~~-~~~~~~~-~~~---~~~~~~ 256 (509)
T KOG2504|consen 192 YLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN--------SAA-SVESTPK-PVE---LRISER 256 (509)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--------ccc-ccccccc-ccc---cccccC
Confidence 999999999999998887766666666666533222222 0000000 000 0000000 000 000000
Q ss_pred CCCccccCCchhHhHHHHhhhccCCCCCCCCcc-cchhhH--HHHHhhhh--hhhhhHHHHHHHHHHhhcchhHHHHhh-
Q 008719 253 GSGKIAHTDDFRCLDKAALELKEDVINPSPWKL-CTVTQV--EEVKTLVR--LVPIPACTIMLNVILTEFLTLSVQQAY- 326 (556)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~- 326 (556)
...... .+.. .....+.. ...++. ..+... .|.+.+.. .+.+.....+..+.+......+..+..
T Consensus 257 ~~~~~~-~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~ 327 (509)
T KOG2504|consen 257 DSGLKK-LSLS---NLATLKRG-----PDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS 327 (509)
T ss_pred CCCCCc-cccc---chhhhhhC-----CccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000000 0000 00000000 000000 000000 00111110 111111111111111111111222111
Q ss_pred -hcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008719 327 -TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY 405 (556)
Q Consensus 327 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~ 405 (556)
.++.. .......+..+..++..++...+.|+-. .+......+++++.+++.+++....
T Consensus 328 ~g~~~~------~aa~l~Siigi~~i~gRi~~G~laD~~~---------~~~~~~~~~~ll~~gl~~~~~p~~~------ 386 (509)
T KOG2504|consen 328 LGLSSN------DAAFLLSIIGVSDIIGRIILGLLADKPG---------IRALVLFLLTLLIAGLARLFLPFAT------ 386 (509)
T ss_pred cCCChh------hhHHHHHHHHHhhhhhhhhhhhhcCccc---------cchHHHHHHHHHHHHHHHHHHHHhc------
Confidence 11111 2222333444455556666665555433 2334455667777776665555442
Q ss_pred hhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 406 AISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
+++.++..-+++|+..+.........+.+..+.+.-+.+.|+..+.+.++..+|+.+.+.+.+
T Consensus 387 -----------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d 449 (509)
T KOG2504|consen 387 -----------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYD 449 (509)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeee
Confidence 556677778888998888777777889999999999999999999999999999999998877
Q ss_pred ccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 008719 486 VTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA 529 (556)
Q Consensus 486 ~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~ 529 (556)
.++ +|+..|.+.++..+++....+...
T Consensus 450 ~tg-----------------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 450 ITG-----------------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ccC-----------------CeeeehhhcChHHHHHHHHHHHhH
Confidence 665 234567777777777765544443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-13 Score=149.69 Aligned_cols=169 Identities=10% Similarity=0.065 Sum_probs=122.0
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhc---ccchhHHHH-HHHHHHHHHHHHHHHhhh
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA---YLGRYWTIA-IFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~---~~Grr~~~~-~~~~~~~i~~~l~~~~~~ 80 (556)
+.+..+..++..|.++.+|+++..+|.+....-+.-.+.-|+.|+++|| .+||||..+ ++.+..++++.++...
T Consensus 23 ~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~-- 100 (460)
T PRK11462 23 IIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST-- 100 (460)
T ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC--
Confidence 3444555678889999999999999999999999999999999999997 368876554 5656777776655542
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
|..++ +....++.+.-++..++.......-.++.+|..++.++ |.+..++.....
T Consensus 101 -p~~s~-------------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s~r~~~~ 155 (460)
T PRK11462 101 -PDLSM-------------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQSWRFVLA 155 (460)
T ss_pred -CCCCc-------------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHHHHHHHH
Confidence 21111 13345566666677888888888889999999876543 999999999999
Q ss_pred HHHHHHHHHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHHH
Q 008719 161 TVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~-------~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
++|..+++.+...+... .+|+....+.++...++..+.+.
T Consensus 156 ~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 156 TAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99988887765544332 25676666666554444444333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-13 Score=146.53 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=82.9
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
.+-...+.++.|+++ .|+|..|+|.+.+...+...++++++|+++||+..+||.+.++.++.++...+....
T Consensus 17 ~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~------- 88 (400)
T PF03825_consen 17 AYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS------- 88 (400)
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 444566778899974 789999999999999999999999999999994456777777666665554444432
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcc
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 144 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 144 (556)
.+.+.+.+..++..+......|...++..+...+++.+
T Consensus 89 ---------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~ 126 (400)
T PF03825_consen 89 ---------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKD 126 (400)
T ss_pred ---------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCC
Confidence 35566666777778888888888888887777654433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.7e-14 Score=151.27 Aligned_cols=151 Identities=12% Similarity=0.041 Sum_probs=126.3
Q ss_pred HHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccc
Q 008719 19 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 98 (556)
Q Consensus 19 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (556)
++++|....+.+++.++|.++++++.+++|+|.|| +.-.+.+..+.+..++-.++....
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~-------------------- 131 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAV-------------------- 131 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 35788888999999999999999999999999999 886666666665555444333332
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh---
Q 008719 99 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--- 175 (556)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~--- 175 (556)
.+.+.+++.|++.|+.++...|+...+++.++.+++ |+..+++++....+|.++|.++...+.
T Consensus 132 --------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~ 197 (495)
T KOG2533|consen 132 --------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLN 197 (495)
T ss_pred --------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence 688999999999999999999999999999999998 999999999999999999999988863
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 176 ---MEHGWGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 176 ---~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
...||||.|++.++..+...+..++..|.
T Consensus 198 ~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 198 GSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred CCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 35789999999998866665555554443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-13 Score=143.47 Aligned_cols=368 Identities=11% Similarity=0.053 Sum_probs=196.9
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHH--HHHHH-HHhhhccc
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA--GLTGI-TLCATMKV 83 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i--~~~l~-~~~~~~~~ 83 (556)
+-...++.+.+++++.|+|.+|+|.+.++..+...+.+|+.|.++|| +|.||-++....+..+ +-... ... |.
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~~---pl 98 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVFG---PL 98 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTHH---HH
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 33456778899999999999999999999999999999999999999 8976655444333221 22221 121 10
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhcc----CcccchhhhhcccCCCCCcchhhhhhhHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA----GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 159 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 159 (556)
++ .| +..+.++.|+..+ ...|..-++..+....+.-+ ++-....
T Consensus 99 l~---------------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~fe--------YG~~R~w 146 (412)
T PF01306_consen 99 LQ---------------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFE--------YGRARMW 146 (412)
T ss_dssp HH---------------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS---------HHHHHHH
T ss_pred HH---------------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCC--------cchHHHH
Confidence 00 11 2223333333333 33344444443333222221 2223335
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccc
Q 008719 160 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELI 239 (556)
Q Consensus 160 ~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
..+|.+++..++|.+.. .+-+..|++.....++..++.+..+++.+++.+..+.
T Consensus 147 GSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~------------------------- 200 (412)
T PF01306_consen 147 GSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA------------------------- 200 (412)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT-------------------------
T ss_pred hhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-------------------------
Confidence 67888888899998876 4567888887766555544444433322111100000
Q ss_pred cccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHH-HHHHHHhhcc
Q 008719 240 GLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTI-MLNVILTEFL 318 (556)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 318 (556)
+. ...++....|. ...-..|++..++.+..... .+.+.-+|++
T Consensus 201 --------~~--------~~~~~~~~~~~--------------------~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~ 244 (412)
T PF01306_consen 201 --------LG--------AKKDKVSLKDV--------------------LSLFKMRNFWFFVLFVIGVAAIYDVFDQQFP 244 (412)
T ss_dssp --------SS--------S------HHHH--------------------HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cc--------cCCCCCcHHHH--------------------HHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000000000 00011122222222222222 2223323322
Q ss_pred hhHHHHhhhcccccccccccCCcccccchhH---HHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 008719 319 TLSVQQAYTMNTHMGKLKLPVTCMPVFPGLS---IFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA 395 (556)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~ 395 (556)
.++...- +.. +.....+...+.+. -.+...+..++ .+| .++++.+.++..++++=....
T Consensus 245 ~y~~~~f---~~~----~~g~~~~G~l~s~~v~~E~~~m~~~p~l----i~r-------ig~k~~Lllag~i~~iRi~~~ 306 (412)
T PF01306_consen 245 IYFASFF---QSA----GQGNQMYGYLWSVQVFLEALMMFFSPWL----INR-------IGAKNLLLLAGVIMAIRIIGS 306 (412)
T ss_dssp HHHHHTS---SSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------H-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh---ccc----ccChhHHhHHHHHHHHHHHHHHHHHHHH----HHh-------cChHhHHHHHHHHHHHHHHHH
Confidence 2222211 111 11111222222222 23333333333 444 334445666666666555554
Q ss_pred HHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHH-HHHHhHHHH
Q 008719 396 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCF 474 (556)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~ig~~ 474 (556)
+..+ +.+++++.-.+.++-..+......-|+.+..|++..++...+. ++..++|..
T Consensus 307 ~~~~-----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~ 363 (412)
T PF01306_consen 307 GFAT-----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGII 363 (412)
T ss_dssp HT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHH
T ss_pred hhhc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence 4442 5677888889999999999999999999999999999988885 688899999
Q ss_pred HHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008719 475 AASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR 531 (556)
Q Consensus 475 lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~ 531 (556)
+.+.+.|.+.+..| +..+|++++.+.++..++..+..++
T Consensus 364 i~s~~~G~lyd~~G------------------~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 364 ILSPLAGYLYDRIG------------------FQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHhhhHHhhHhhcC------------------cHHHHHHHHHHHHHHHHHheeeecC
Confidence 99999999988655 3467899998877776666655543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-13 Score=146.83 Aligned_cols=155 Identities=11% Similarity=-0.000 Sum_probs=121.8
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 92 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (556)
.....+++++|+|..|.+++.+... ....+.+++|+++|| +|||+++.++.+++.+|+++++++.....
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~~i--------- 116 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQEVI--------- 116 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 3445778899999999999988744 344677789999999 89999999999999999999998622000
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH-HHHHH
Q 008719 93 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV-AFTLV 171 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~-g~~i~ 171 (556)
..+.+.+++.|++.|+|.+...+.......+++| ++ |+++.++......+|+++ +++..
T Consensus 117 -------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~ 176 (591)
T PTZ00207 117 -------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQL 176 (591)
T ss_pred -------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0367889999999999999999999999999997 45 999999999999999975 55555
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 172 VYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 172 ~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
+++. .+|+..|++.++..++..++.+.
T Consensus 177 ~l~~--~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 177 AFFS--DNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHH--HhHHHHHHHHHHHHHHHHHHHHh
Confidence 5554 35777787777765554444333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-13 Score=133.28 Aligned_cols=326 Identities=15% Similarity=0.127 Sum_probs=221.9
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
+..-+++++|+|.+++|.+.+.-.+...+.++++.+++.| +|..+.+..++++.++|.++=...
T Consensus 34 LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~--------------- 97 (395)
T COG2807 34 LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG--------------- 97 (395)
T ss_pred hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc---------------
Confidence 4456788999999999999999999999999999999999 999999999999999887766652
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
+...++.+-.+.|.|.+......++++-+.||++ -+..++++..+.++|+++++.+...
T Consensus 98 --------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavp 156 (395)
T COG2807 98 --------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVP 156 (395)
T ss_pred --------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhH
Confidence 4577888999999999999999999999999976 4889999999999999999999999
Q ss_pred hhccc-chhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCcccc
Q 008719 174 IQMEH-GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIK 252 (556)
Q Consensus 174 l~~~~-gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (556)
+.++. |||..+.+=+...+++++..+.-..+ ++.+..+.. ..+..
T Consensus 157 la~~~~gW~~aL~~WAl~allAl~~WlPq~~r--~~~~~~~~~----------------~~~~~---------------- 202 (395)
T COG2807 157 LAQHSGGWRGALGFWALLALLALLIWLPQALR--EQAASIATK----------------LVSVR---------------- 202 (395)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHhhhccc--ccccccccc----------------ccccc----------------
Confidence 98877 79999988777777666654432111 111110000 00000
Q ss_pred CCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhccccc
Q 008719 253 GSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 332 (556)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (556)
..|+ +.......+.+-.....++....+++..+.++.. +..
T Consensus 203 ----------------------------~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~--sa~- 243 (395)
T COG2807 203 ----------------------------KVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL--SAA- 243 (395)
T ss_pred ----------------------------cccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC--CHH-
Confidence 0010 0011111222334456677888888887776433 322
Q ss_pred ccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcc
Q 008719 333 GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE 412 (556)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (556)
..+++..+..+..+....+.-.+..|. .+.+........++.++..-+.+....
T Consensus 244 -----~aG~llsl~~l~~~~~~ll~P~la~R~----------~n~r~~~~~~~~~~l~G~~G~~~~P~~----------- 297 (395)
T COG2807 244 -----EAGSLLSLMQLAQLPTALLIPLLARRS----------KNQRPLVVLALLLMLVGLVGLLLAPGQ----------- 297 (395)
T ss_pred -----HhhhHHHHHHHHHHHHHHHHHHHHHHh----------cccchHHHHHHHHHHHHHHHHHHhhhh-----------
Confidence 223333333333333333333333331 233344555555555555554443211
Q ss_pred ccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc-CchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccC
Q 008719 413 FSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA-PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 488 (556)
Q Consensus 413 ~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~ 488 (556)
..++| .+++|+|.+.++|...+++.... .++..+.-+|+.+....+=...||.++|.+.|.+|
T Consensus 298 ---------~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 298 ---------LPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred ---------HHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 12333 47889999999999888887664 44666777888887777888889999999998777
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-12 Score=136.85 Aligned_cols=353 Identities=12% Similarity=0.117 Sum_probs=220.2
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhc---ccchhHH-HHHHHHHHHHHHHHHHHhhh
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA---YLGRYWT-IAIFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~---~~Grr~~-~~~~~~~~~i~~~l~~~~~~ 80 (556)
..+--+..++..|.++..|+++..+|.+..+.-+.=++.-|+.|.+.|| .+||+|- ++.+.+.+++.+.++..+
T Consensus 26 ~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~-- 103 (467)
T COG2211 26 FAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFIT-- 103 (467)
T ss_pred HHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcC--
Confidence 3444566778888899999999999999999999999999999999998 3677654 555667777777777765
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
|+.+.. ......++.-++.+++...+...-.++.++.+++.++ |.+..++.....
T Consensus 104 -p~~~~~-------------------~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R~~l~s~R~~~~ 158 (467)
T COG2211 104 -PDFSMT-------------------GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----RASLTSWRMVFA 158 (467)
T ss_pred -CCcccC-------------------cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----HHHHHHHHHHHH
Confidence 111111 3456677778888999999999999999999877653 999999999999
Q ss_pred HHHHHHHHHHHHHhhc-------ccchhHHHHHHHHHHHHHHHHHHHhccccccc-CCCCCchhHHHHHHHHHHhhcccc
Q 008719 161 TVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLTRVAQVLVAAFRKRHAA 232 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~-------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 232 (556)
++|..+...+.+.+.. ..||+...++.++...+..+..+...++...+ .+.++
T Consensus 159 ~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~------------------- 219 (467)
T COG2211 159 SLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT------------------- 219 (467)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-------------------
Confidence 9997766655554442 34677776666666555555555544332211 00000
Q ss_pred ccccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHH
Q 008719 233 FSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNV 312 (556)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (556)
+. ..++.+... .....|.++..+ ...++.+.
T Consensus 220 -----~~----------------------~~~~~~~~~-------------------~~~~Nrp~~~~l---~~~l~~~~ 250 (467)
T COG2211 220 -----GV----------------------KLKLKDSFL-------------------LIFKNRPLLLLL---LMNLLLFI 250 (467)
T ss_pred -----cc----------------------cccHHHHHH-------------------HHHccchHHHHH---HHHHHHHH
Confidence 00 000000000 000112221111 12222222
Q ss_pred HHhhcchhHHHHh-hhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHH
Q 008719 313 ILTEFLTLSVQQA-YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILS 391 (556)
Q Consensus 313 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~ 391 (556)
.+....+.+..+. ..++.. +..+...........++..++..++..++++| +....|.++..++
T Consensus 251 ~~~i~~s~~~yy~~y~lg~~----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----------~~~~~~~~~~~i~ 315 (467)
T COG2211 251 AFNIRGSIMVYYVTYVLGDP----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----------KLFLIGLLLLAVG 315 (467)
T ss_pred HHHHHhhhhheeEEEEcCCh----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----------HHHHHHHHHHHHH
Confidence 2222222222111 111111 22222222233333344455555555554444 4566777777777
Q ss_pred HHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCc-------hhHHHHHHH
Q 008719 392 VIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-------AMKSIGSAY 464 (556)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~gl 464 (556)
...+.+.. + -+.+.+++..++.++|.+...+..++++.+..+. +..|...|.
T Consensus 316 ~~~~~f~~--------------------~-~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~ 374 (467)
T COG2211 316 YLLLYFTP--------------------A-GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG 374 (467)
T ss_pred HHHHHhhc--------------------C-cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence 66665553 1 2556666777888999999999999999886543 456778899
Q ss_pred HHHHHhHHHHHHHHHHHHhhhccC
Q 008719 465 AALAGGLGCFAASILNSIIKSVTG 488 (556)
Q Consensus 465 ~~~~~~ig~~lg~~l~~~i~~~~~ 488 (556)
.++++-+|.+++..+.+++....|
T Consensus 375 ~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 375 MTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999998887655
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-11 Score=127.40 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCC
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 502 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~ 502 (556)
+.+.+.+.-++.|+..+...+..-++..+..|++..+...|++.+.....+++||++++.+.+.+||
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~------------- 445 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS------------- 445 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------
Confidence 3444556677889999999999999999999999999999999999999999999999999887661
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Q 008719 503 NTGRFDYLYWLLAVLSVINFCAFLY 527 (556)
Q Consensus 503 ~~~~~~~~f~~~~~~~~v~~i~~~~ 527 (556)
..+-++.+.++.++++++.+.
T Consensus 446 ----~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 446 ----QRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred ----chhHHHHHHHHHHHHHHHHhh
Confidence 124467778888777766533
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=143.36 Aligned_cols=165 Identities=12% Similarity=-0.005 Sum_probs=125.8
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
...+|++..+++.|+++.+|++..+.++......++..++.+++|+++|| +|||+.+.++.++..++...+.....
T Consensus 263 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~--- 338 (490)
T PRK10642 263 NVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFILIN--- 338 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 35688999999999998899999888888888889999999999999999 89999988877654443332221100
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
..+...+++++++.|++.+...+....+..+.+|++. |+++.++.+....++
T Consensus 339 ----------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~~~~~~~~ 390 (490)
T PRK10642 339 ----------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAAFNISVLV 390 (490)
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHHHHHHHHH
Confidence 0235667788888888877777777888889999988 999999877767777
Q ss_pred HHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHH
Q 008719 164 AIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~ 200 (556)
+.++|.+.+++.+..+ |+.++++..+..+++++..++
T Consensus 391 g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 391 AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 8889999999877544 777776655555555444444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-10 Score=117.92 Aligned_cols=376 Identities=13% Similarity=0.052 Sum_probs=217.2
Q ss_pred HHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccc-----hh-HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 008719 18 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RY-WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 91 (556)
Q Consensus 18 l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rr-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (556)
|-.++++...-.+.++..-.+.+. ..+..|+.+|+ .+ || +-+..|..+...+..+...+...-..+
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~------ 77 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES------ 77 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc------
Confidence 446789998888888888766655 59999999999 56 55 345666777777766666553321110
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008719 92 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 171 (556)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~ 171 (556)
.+..+++.............+.|+|.+....+..++++|..||++ |++..++.+.+.-+|.+++..+.
T Consensus 78 ------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 78 ------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 001111122233345566777899999999999999999999998 99999999999999999999999
Q ss_pred HHhhcccch-hHHHHHHHHH---HHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCC
Q 008719 172 VYIQMEHGW-GSAFGALAIA---MGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGK 247 (556)
Q Consensus 172 ~~l~~~~gw-~~~f~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (556)
+.+.+.++- |..=.+..+. ..+.++..+-..++.+...+.
T Consensus 146 g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~------------------------------------ 189 (403)
T PF03209_consen 146 GRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAA------------------------------------ 189 (403)
T ss_pred HHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccC------------------------------------
Confidence 988877763 3222222222 222222222222211111100
Q ss_pred CccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhh
Q 008719 248 HSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT 327 (556)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (556)
.++++..+.+.......+ .+.++++..+ +.....+++.= -....|--+.
T Consensus 190 ----------~~~~~~~f~~a~~~~~~~----------------~~a~~f~~fl--~l~t~a~~~QD-~iLEPygg~V-- 238 (403)
T PF03209_consen 190 ----------AERPRPPFREAWRQVWAS----------------PQARRFFVFL--FLGTLAFFMQD-VILEPYGGEV-- 238 (403)
T ss_pred ----------CCCCCccHHHHHHHHHhC----------------CChhHHHHHH--HHHHHHHHhhH-HHcCCchhHH--
Confidence 000111111111111000 1122222111 11111111110 0001111111
Q ss_pred cccccccccccC---CcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 328 MNTHMGKLKLPV---TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRN 404 (556)
Q Consensus 328 ~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~ 404 (556)
+++++ ..++.+.....++...+..++.. +| .++.+....|....++++..+.....
T Consensus 239 -------fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~---- 297 (403)
T PF03209_consen 239 -------FGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP---- 297 (403)
T ss_pred -------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh----
Confidence 12222 22444555666666666665433 22 33344556676666666655544431
Q ss_pred hhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 008719 405 YAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 484 (556)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~ 484 (556)
. -+.+.+.+..+++|++.++......+...+.++++..|..+|.|...+.++..++..+.+.+.
T Consensus 298 --------------~--~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~ 361 (403)
T PF03209_consen 298 --------------L--GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALR 361 (403)
T ss_pred --------------c--ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 255667888999999999999999999999999999999999999999999999999988877
Q ss_pred hccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHH
Q 008719 485 SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAF 525 (556)
Q Consensus 485 ~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~ 525 (556)
|... . +..++ ....|..+|.+=++..++++...
T Consensus 362 D~~~--~-----~~~~~-~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 362 DLVR--A-----LFGNS-PALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHH--H-----hccCC-cchHHHHHHHHHHHHHHHHHHHH
Confidence 6433 0 11100 11124456666666665555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=125.83 Aligned_cols=349 Identities=13% Similarity=0.120 Sum_probs=207.9
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 92 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (556)
-+..+++.+.+++.++..++.+.|+....+.+.++|++.||.+|-|..-++-.++..+|-+..+...
T Consensus 65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg------------- 131 (459)
T KOG4686|consen 65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG------------- 131 (459)
T ss_pred hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch-------------
Confidence 3456677778888888999999999999999999999999999988776666666677777766532
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008719 93 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 172 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~ 172 (556)
++ ..+|.+..+|++.|+|.-..-.+-+++...+|..+| .+-.++++..+..+|..+-.++-+
T Consensus 132 -i~-----------~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~ 193 (459)
T KOG4686|consen 132 -IS-----------HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMP 193 (459)
T ss_pred -HH-----------HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecH
Confidence 11 578999999999999988888888999999999998 999999999999999998888888
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCcccc
Q 008719 173 YIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIK 252 (556)
Q Consensus 173 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (556)
++.+..+--.+ ...-..+++.+++-.. .+..+.+.........+|..
T Consensus 194 ~ly~~~~~~~~---~~ghT~LG~~l~~~~~---------tc~~slical~lg~~D~rAe--------------------- 240 (459)
T KOG4686|consen 194 FLYDTMGRMFP---GVGHTLLGLWLCFEVK---------TCKQSLICALSLGLSDDRAE--------------------- 240 (459)
T ss_pred HHHHHHHHhcc---cchHHHHHHHHHHHHH---------HHHHHHHHHHHhhhhhhHHH---------------------
Confidence 88765541110 0111111111111000 00000000000000000000
Q ss_pred CCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcch---hHHHHhhhcc
Q 008719 253 GSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLT---LSVQQAYTMN 329 (556)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 329 (556)
+.++.++. ..+++ + | .+.+.+.+.-+ .+ +.+..+.|++...-+.+ .+.+.-.+++
T Consensus 241 --rilh~e~g---------~~Ge~-----p-k---Ltdv~~f~ppf-w~-~~iicv~yyva~fPFi~lg~~fF~~rfGlS 298 (459)
T KOG4686|consen 241 --RILHLEEG---------FLGEE-----P-K---LTDVNTFYPPF-WV-LVIICVLYYVAWFPFITLGPMFFQKRFGLS 298 (459)
T ss_pred --HHHhhhcC---------cccCC-----c-c---cccccccCccH-HH-HHHHHHHHHHHHHHHhhhhHHHHHHhhCCC
Confidence 00000000 00000 0 0 00001111000 00 01111222222211111 1111111111
Q ss_pred cccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008719 330 THMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISH 409 (556)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (556)
...++.+.+..-.......|+.+.+.|+.+++. +.+..+.+...++-..+.+..
T Consensus 299 ------~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~---------- 352 (459)
T KOG4686|consen 299 ------AVSAGNILSTVYGISAVLSPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF---------- 352 (459)
T ss_pred ------hhhccchhhhhhhhhhhhhhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh----------
Confidence 112222333333445667788889999988764 234444444444433333322
Q ss_pred CccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccC
Q 008719 410 GYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 488 (556)
Q Consensus 410 ~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~ 488 (556)
++ ....+.++|++..+.....|-.+...+|++.-|++-|..+..+++|-++.+.+.+++.+..|
T Consensus 353 ------------ls---Py~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 353 ------------LS---PYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred ------------cc---HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 22 23457788999999888899999999999999999999999999999999999999887433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-12 Score=111.77 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccchhHHHH
Q 008719 33 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 112 (556)
Q Consensus 33 ~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (556)
.+.+.++..++.++.|+++|| +|||+.+..+..+..++.+++... .+.+.+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~ 54 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVL 54 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHH
Confidence 345677888999999999999 899999999998888887777664 456778
Q ss_pred HHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q 008719 113 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 192 (556)
Q Consensus 113 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~ 192 (556)
.+.+++.|++.+...+...++..|.+|+++ |++..++.+...++|..+++.+.+++.+..+|++.|++.+....
T Consensus 55 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (141)
T TIGR00880 55 IIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128 (141)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHH
Confidence 889999999999999999999999999888 99999999999999999999999999988899999998877766
Q ss_pred HHHHHHHHh
Q 008719 193 ISNMLFFIG 201 (556)
Q Consensus 193 ~~~~~~~~~ 201 (556)
++.+..+..
T Consensus 129 ~~~~~~~~~ 137 (141)
T TIGR00880 129 AAFILLAFL 137 (141)
T ss_pred HHHHHHhhc
Confidence 665554443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=128.29 Aligned_cols=165 Identities=14% Similarity=0.073 Sum_probs=133.6
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
++++.+..+++.|+.+ .|. .+.++..+.+.++..++.++.|++.|| +||||.+..+..+..++..+....
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~------ 299 (399)
T PRK05122 230 IGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLA------ 299 (399)
T ss_pred HHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHh------
Confidence 4555666778888764 565 345677788888999999999999999 899999988888888777666654
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.+.+..++.+++.|++.+...|.......|.+|+++ |+++.++++...++|.
T Consensus 300 ----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~ 351 (399)
T PRK05122 300 ----------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSL 351 (399)
T ss_pred ----------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHH
Confidence 344566778899999999888888888888888777 9999999999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 207 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~ 207 (556)
.+++.+.|++.++.||++.|++.++..+++.+..+..+++.++
T Consensus 352 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 352 GITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPR 394 (399)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999998999999999888777776666655554433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=126.26 Aligned_cols=158 Identities=11% Similarity=0.109 Sum_probs=124.6
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
++....+++.|+++++|.++.+++++.+...+...++.+++|+++|| +|||+.+..+.....+....+...
T Consensus 232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~-------- 302 (393)
T PRK15011 232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMA-------- 302 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHH--------
Confidence 34455678889999999999999999888888888899999999999 899998877766555443333322
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
.+.+.+.+.+++.+++.|...+....+..|.+|+ + |+++.++++...++|..+
T Consensus 303 --------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~~~lg~~~ 355 (393)
T PRK15011 303 --------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNTSRVGWII 355 (393)
T ss_pred --------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHHHHHHHHH
Confidence 3445666778888777777666677777888774 4 788999988889999999
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 167 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 167 g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
|+.++|.+.+.+||+.+|++.++..+++.+..+.
T Consensus 356 g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 356 AGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999899999999888776666655544
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-11 Score=122.63 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=142.9
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhH-HHHHHHHHHHHHHHHHHHhhhcc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-~~~~~~~~~~i~~~l~~~~~~~~ 82 (556)
...+.......+.|+++.+|.+..+.++......++..++.++.|+++|| +|||+ .+..+..+..++..+....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~---- 262 (352)
T cd06174 188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLALA---- 262 (352)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHh----
Confidence 34566777788888888779999999999999999999999999999999 89999 9999999988888877765
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 162 (556)
.+.+.+++..++.|++.+...+...++..|..|+++ |++.+++.....++
T Consensus 263 ------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 312 (352)
T cd06174 263 ------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNTFGSL 312 (352)
T ss_pred ------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHHHHHH
Confidence 346778889999999999999999999999999877 99999999999999
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 008719 163 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 198 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 198 (556)
|..+++.+.+.+.+..+|+..|.+.++..+++.+..
T Consensus 313 ~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 313 GGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 999999999999988999999999888877666554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-11 Score=131.17 Aligned_cols=163 Identities=18% Similarity=0.105 Sum_probs=122.7
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
..++++..++|.|+++.+|+|..++++..+.+.++..++.+++|+++|| +|||+.+.....+..++..++.....
T Consensus 272 ~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~~~~~~~~~---- 346 (467)
T PRK09556 272 IVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIFTLGVYQHA---- 346 (467)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHHHHHHHHhc----
Confidence 3456778889999999999999999999999999999999999999999 89998776655444433322222100
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH-H
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-G 163 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-G 163 (556)
.+....++.+++.|+..............|.+|++. |+++.++.....++ |
T Consensus 347 ----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~g~l~g 398 (467)
T PRK09556 347 ----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTFAYLFG 398 (467)
T ss_pred ----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHHHHHHh
Confidence 234455667777776543333333456669999887 99999999998886 7
Q ss_pred HHHHHHHHHHhhc------------ccchhHHHHHHHHHHHHHHHHHHH
Q 008719 164 AIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 164 ~~~g~~i~~~l~~------------~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
..++|.+.|++.+ ..||+..|++..+..+++.+..+.
T Consensus 399 ~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 399 DSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999998 578999998887777766555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-11 Score=123.33 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=126.1
Q ss_pred hhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008719 9 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 88 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 88 (556)
.....++.|+++++|.++.+.+++.....+....+.+++|+++|| +|||+.+.++.++..+...+....
T Consensus 217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~---------- 285 (375)
T TIGR00899 217 LYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAAD---------- 285 (375)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHH----------
Confidence 345567888888999999999999888877888889999999999 899999888776655544443332
Q ss_pred CCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 008719 89 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 168 (556)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 168 (556)
.+.+.+++.+++.|++.|...+....+..|..|+ + ++++.++++...++|..++|
T Consensus 286 ------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~g~ 340 (375)
T TIGR00899 286 ------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWIIAG 340 (375)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHH
Confidence 3556677788889999888888888888888764 3 56999999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008719 169 TLVVYIQMEHGWGSAFGALAIAMGISNMLFF 199 (556)
Q Consensus 169 ~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 199 (556)
.++|++.+..||+..|++.++..+++.+...
T Consensus 341 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 341 SVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 9999999989999999998887766665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-11 Score=123.26 Aligned_cols=152 Identities=17% Similarity=0.104 Sum_probs=126.2
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
.....+.|. +++|.++.+.+++...+.++..++.++.|+++|| +|||+.+.++..+..++..++.....
T Consensus 224 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~--------- 292 (377)
T TIGR00890 224 LIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMAAMLFIPM--------- 292 (377)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHccc---------
Confidence 344455565 5689999999999999999999999999999999 89999999998888888776665310
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
.+...+....++.|++.+...+...++..|.+|+++ |++..++.+...++|..++|.
T Consensus 293 -----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~~~~ 349 (377)
T TIGR00890 293 -----------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKAVAGIFGGL 349 (377)
T ss_pred -----------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHHHHHHHHHH
Confidence 122344556778888888888888899999999888 999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHH
Q 008719 170 LVVYIQMEHGWGSAFGALAIAMGISN 195 (556)
Q Consensus 170 i~~~l~~~~gw~~~f~i~~~~~~~~~ 195 (556)
+.|++.++.||+++|.+.++..+++.
T Consensus 350 ~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 350 IASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 99999999999999998877655543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-11 Score=126.21 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=127.2
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
.+++++..+++.|+++.+|+|..+++++.+.+.++..++.+++|+++|| +|||+.+..+..+..++..+....
T Consensus 219 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~~~------ 291 (394)
T PRK03699 219 LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVLMYLFVNT------ 291 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHc------
Confidence 4567788899999999999999999999999999999999999999999 899999887776666554444432
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.+.....+..++.|++.+...+...+...+..+++ +++..+......++|.
T Consensus 292 ----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~g~ 342 (394)
T PRK03699 292 ----------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILTCGTIGT 342 (394)
T ss_pred ----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHHhhhHHH
Confidence 23345556677888888888888888877776533 4566778888889999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 198 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 198 (556)
.++|.+.|++.+..||+..+++.++..+++.++.
T Consensus 343 ~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 343 MLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999988777766554443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-09 Score=112.29 Aligned_cols=161 Identities=12% Similarity=-0.020 Sum_probs=119.0
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
...|..+-+| +...+-|...+|...+....+.+-|+.|| +|=|...+++..+..+|..+=.++... ...
T Consensus 67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~p-~v~-------- 135 (480)
T KOG2563|consen 67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSLP-FVP-------- 135 (480)
T ss_pred HHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccCc-ccc--------
Confidence 3345555667 67777899999999999999999999999 999999999999999998877776321 110
Q ss_pred cccccCCCCCccchhH--HHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQM--LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 171 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~--~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~ 171 (556)
... ...+.+..+.+...-.+.-..+.+.+.+|++++ |..+..+-.++..+|.++|.++.
T Consensus 136 -------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 136 -------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred -------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhcc
Confidence 122 477788888888888887777888889999998 99999998888889999988877
Q ss_pred HHhhcc------cchhH--HHHHHHHHHHHHHHHHHHhccc
Q 008719 172 VYIQME------HGWGS--AFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 172 ~~l~~~------~gw~~--~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
..+..+ ..|.. .|+....+..+.+.+..+.+++
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~ 237 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTK 237 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 766543 34554 3443344433334444444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=124.23 Aligned_cols=163 Identities=10% Similarity=0.051 Sum_probs=130.0
Q ss_pred hHHhHHHHHHHhhCCCh--------hhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 008719 10 LSVNMVTFMFYVMHKSF--------ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 81 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~--------~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~ 81 (556)
...+.+.|++ +.|.++ .+.+.+.+...+...++.++.|+++|| +|||+++.++.++..++..++.....
T Consensus 227 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~v~~~l~~~~~~- 303 (418)
T TIGR00889 227 TNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWALRFGFFAYGDP- 303 (418)
T ss_pred HHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCc-
Confidence 3344566765 455443 567899999999999999999999999 89999999999988887766665310
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHH-HHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSV 160 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~ 160 (556)
...+.+.+++.+++.|++.+...++...+++|.+|+++ |++++++.+ ...
T Consensus 304 -----------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~ 354 (418)
T TIGR00889 304 -----------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCN 354 (418)
T ss_pred -----------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHH
Confidence 00234567788999999999999999999999999888 999999997 567
Q ss_pred HHHHHHHHHHHHHhhcc------cchhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 161 TVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~------~gw~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
.+|.++||.++|++.+. +||+.+|.+.++..+++.++.+...++
T Consensus 355 ~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 355 GFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999886 469999998888766666665555554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-09 Score=110.03 Aligned_cols=84 Identities=10% Similarity=0.027 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc---------
Q 008719 107 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------- 177 (556)
Q Consensus 107 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~--------- 177 (556)
.++..+.++.++.|.|.+...++.++++++..++++ +.+.+++......+|..+||++++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 578899999999999999999999999999998887 89999999999999999999999987732
Q ss_pred -------cchhHHHHHHHHHHHHHHH
Q 008719 178 -------HGWGSAFGALAIAMGISNM 196 (556)
Q Consensus 178 -------~gw~~~f~i~~~~~~~~~~ 196 (556)
..|+++|++.+....+..+
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i 107 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAI 107 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999966655444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-10 Score=120.24 Aligned_cols=163 Identities=15% Similarity=-0.037 Sum_probs=128.7
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
.+++...+++.|+++.+|.+..+++++...+.++..++.++.|+++|| +|||+.+ .+..+..++..+.....
T Consensus 220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~~~l~~~~------ 291 (390)
T PRK03545 220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCLLLLLPAA------ 291 (390)
T ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHHHHHHHHh------
Confidence 344556677888888899999999999999999999999999999999 8988654 44444444433332210
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 165 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 165 (556)
.+.+.+++..++.|++.+...+...+.+.+..| +. |+++++++....++|..
T Consensus 292 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~ 343 (390)
T PRK03545 292 ---------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGIFNIGIG 343 (390)
T ss_pred ---------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHHHHHHHH
Confidence 345667778888899988887888888887765 34 89999999999999999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 166 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 166 ~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
+||.++|++.+++|++..|++.++..+++.+......++
T Consensus 344 ~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
T PRK03545 344 AGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFRR 382 (390)
T ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999988887777776665543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=122.79 Aligned_cols=160 Identities=12% Similarity=0.052 Sum_probs=126.6
Q ss_pred hhHHhHHHHHHHhhCCChh---hHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 9 GLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
.+.+.++.|+.+..+.... ..+.+...+.++..++.+..|+++|| +|||+.+..+..+..++.+.....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~------- 308 (408)
T PRK09874 237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFV------- 308 (408)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHh-------
Confidence 3445667777654432221 24555666778888899999999999 899999998888777666655543
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 165 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 165 (556)
.+.+.+++.+++.|++.+...|...+++.+..++++ |++.+++.+...++|..
T Consensus 309 ---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ 361 (408)
T PRK09874 309 ---------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNV 361 (408)
T ss_pred ---------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHH
Confidence 345677788999999999999999999988888777 99999999999999999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 166 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 166 ~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
+||.++|++.+.+||+..|++.++..+++.+..+...+
T Consensus 362 ~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 362 TGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred hhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887776665544333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=122.07 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=130.4
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
+++..+..+.+.|+++ .|++ +.+.....+.++..++.++.|++.|| +||||.+..+..+..++.++....
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~------ 299 (392)
T PRK12382 230 VGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLA------ 299 (392)
T ss_pred HHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHc------
Confidence 3455666777788764 5655 35666777888889999999999999 899999999988888887766653
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.+.+...+..++.|++.+...|...+...|.+|+++ |++..++++...++|.
T Consensus 300 ----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~ 351 (392)
T PRK12382 300 ----------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAY 351 (392)
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHH
Confidence 344566778889999999888888888899988877 9999999999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
.+||.+.+++.+++||+..|.+.++..+++.+..+.
T Consensus 352 ~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 352 GVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988877766665544
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=122.66 Aligned_cols=159 Identities=12% Similarity=-0.014 Sum_probs=132.0
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 87 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (556)
+++..+++.|+++.+|.+..+.+++.+.+.++..++.+++|+++|| .++++.+..+.++..++.+++...
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~--------- 309 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLM--------- 309 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHcc---------
Confidence 4556678889988899999999999999999999999999999999 788888888888777777666553
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
.+.....++.++.|++.+...+...+++.|..|++. |++.+++++...++|..+|
T Consensus 310 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g 364 (417)
T PRK10489 310 -------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIG 364 (417)
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHH
Confidence 345566778888899888887888899999999887 9999999999999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 008719 168 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 201 (556)
Q Consensus 168 ~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~ 201 (556)
|.+.|++.+.+|++..+++.+...++..+.....
T Consensus 365 ~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 365 AALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998888887776655444444343
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-11 Score=121.56 Aligned_cols=163 Identities=24% Similarity=0.272 Sum_probs=131.4
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhccc-chhHHH-HHHHHHHHHHHHHHHHhhhccccC
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grr~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
|++..+.|.|++|..|+|..++++..+.|..+...+++++||++||++ |||... +++++...++.+....+
T Consensus 269 ~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~------- 341 (448)
T COG2271 269 YGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA------- 341 (448)
T ss_pred HHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-------
Confidence 788999999999999999999999999999999999999999999987 777543 34444444444444443
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH-HH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GA 164 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-G~ 164 (556)
|+ .+..+..+..+++|+..-+..-.+.....|..|++- -+++.++.....-+ |+
T Consensus 342 ~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~Glf~Yl~Ga 396 (448)
T COG2271 342 PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVGLFAYLIGA 396 (448)
T ss_pred CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhhhHHHHhhH
Confidence 21 466788888888998888887777788888888877 88999998888877 99
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 202 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 202 (556)
+.+....|++.+.+||...|.+..+..+++.+++....
T Consensus 397 ~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 397 ALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred HhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999999887777666655554433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=121.44 Aligned_cols=159 Identities=11% Similarity=0.009 Sum_probs=126.1
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
.++.+..+++.|+++ .|++..+.+.+...+.++..++.++.|+++|| +|||+.+.++.+...++..+....
T Consensus 235 ~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~------- 305 (406)
T PRK11551 235 VLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAA------- 305 (406)
T ss_pred HHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 455666677888864 79999999999999999999999999999999 899999888766666555544443
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 165 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 165 (556)
.+.+.+.+..++.|++.++..+...++..|.+|+++ |++..++.+....+|..
T Consensus 306 ---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ 358 (406)
T PRK11551 306 ---------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSM 358 (406)
T ss_pred ---------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHH
Confidence 233455566677888888888888999999999888 99999999999999999
Q ss_pred HHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHH
Q 008719 166 VAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 166 ~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~ 200 (556)
+||.++|++.+..+ |...+++.....+++.++.+.
T Consensus 359 ~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 359 AGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987654 666666666555555554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=124.85 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=126.8
Q ss_pred hHHhHHHHHHHhh---CCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 10 LSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 10 ~~~~~~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
....++.|+.+.+ +.+..+.+++.+...++..++.+++|+++|| +|||+.+..+.++..++.++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~-------- 312 (420)
T PRK09528 242 FDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFA-------- 312 (420)
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhc--------
Confidence 3345677776543 5667788999999999999999999999999 899999999999888888877765
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHH-HHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAI 165 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~ 165 (556)
.+.+.++..+++.|++.+...+....++.+.+|++. |++..+. ++...++|.+
T Consensus 313 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ 366 (420)
T PRK09528 313 --------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAV 366 (420)
T ss_pred --------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHH
Confidence 456677888999999998888888889999998776 7776655 5667889999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 166 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 166 ~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
+++.+.|++.+.+||+.+|.+.++..++..++.+.
T Consensus 367 ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 367 FLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877765555444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-09 Score=108.98 Aligned_cols=129 Identities=14% Similarity=0.047 Sum_probs=89.0
Q ss_pred hHHhHHHHHHHhhCC---Chh----hHhHHHHHHHHHHHHHhhHHHHhhhcccchhH-HHHHHHHHHHHHHHHHHHhhhc
Q 008719 10 LSVNMVTFMFYVMHK---SFA----DSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAGLTGITLCATM 81 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~---s~~----~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-~~~~~~~~~~i~~~l~~~~~~~ 81 (556)
....+++|+++..+- ++. -.+...++..+...+..|+-|.++|+ .|+|| .+-.+..+-.+..+++...
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i--- 109 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFI--- 109 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHh---
Confidence 345688999987766 443 34556666778888899999999999 77655 4455555555555555554
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
++ ..+++...+..++..++.......-.+++.+..++++ -++.-+.-+....
T Consensus 110 ----~~------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gy 161 (438)
T COG2270 110 ----PP------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGY 161 (438)
T ss_pred ----CC------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCccccccccccc
Confidence 11 1356677778888999999999999999999999887 4444445445556
Q ss_pred HHHHHHHHH
Q 008719 162 VGAIVAFTL 170 (556)
Q Consensus 162 lG~~~g~~i 170 (556)
+|+.+..+.
T Consensus 162 lgs~i~li~ 170 (438)
T COG2270 162 LGSVILLIF 170 (438)
T ss_pred ccchHHHHH
Confidence 666554433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-10 Score=120.29 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=129.5
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
..+++++..+++.|+++ +|.+..+++...+.+.++..++.++.|+++|| +|||+.+.++..+..++..+.....
T Consensus 218 ~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~~---- 291 (393)
T PRK09705 218 NGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWLP---- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHcc----
Confidence 45677888999999975 89999999999999999999999999999999 8999999988877777766554320
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
.+.... ..++.|++.+...|.......+..++++. |++.+++.+...+++
T Consensus 292 -----------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-----~g~~~g~~~~~~~~~ 341 (393)
T PRK09705 292 -----------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI-----AGKLVAFMQGIGFII 341 (393)
T ss_pred -----------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH-----HHHHHHHHHHHHHHH
Confidence 111122 22456888888888877777777754321 899999999999999
Q ss_pred HHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 164 AIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
..+||.+.|++.+..| |...|.+.++..++..+......++
T Consensus 342 ~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 342 AGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999876 8888888777666665555555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-10 Score=118.74 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=122.8
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 87 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (556)
.....+++.|+++ .|.+..+++++.+.+.++..++.++.|+++|| +|||+.+..+..+..++..+.. .
T Consensus 217 ~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~--------- 284 (381)
T PRK03633 217 GSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-S--------- 284 (381)
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-h---------
Confidence 3445667888865 79999999999999999999999999999999 8999999888877776654332 1
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
. ......+++.|++.+...|+..+...|..|+++ ++...+.+....++|.++|
T Consensus 285 --------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~ig 337 (381)
T PRK03633 285 --------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLG 337 (381)
T ss_pred --------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 0 123346677788777888999999999888766 7777777778889999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 168 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 168 ~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
|.++|++.++++|++.|.+.+...++..+..+.
T Consensus 338 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 338 PSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887776655544333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=124.25 Aligned_cols=148 Identities=17% Similarity=0.127 Sum_probs=116.3
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
+..+++.|+++++|++..+++++.+.+.++..++.+++|+++|| +|||+.+.++..+..++.++......
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~--------- 363 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIGG--------- 363 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhccc---------
Confidence 45678999988999999999999999999999999999999999 89999988887666655443332200
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
.+.+.+....++.+....+..+...++..|.+|+++ |++.+++.+...++|..+||.
T Consensus 364 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~ 420 (496)
T PRK03893 364 -----------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPI 420 (496)
T ss_pred -----------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHH
Confidence 233344444444444334445667788899999887 999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHH
Q 008719 170 LVVYIQMEHGWGSAFGALAIA 190 (556)
Q Consensus 170 i~~~l~~~~gw~~~f~i~~~~ 190 (556)
++|++.+.+||+..+...+..
T Consensus 421 l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 421 LGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHHHHhccCChHHHHHHHHHH
Confidence 999999999999887665543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-09 Score=116.91 Aligned_cols=192 Identities=14% Similarity=0.099 Sum_probs=147.8
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC-
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP- 86 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~- 86 (556)
.++......-+++.+++++++.|++.+.+.++..+...+..+.+-| .-|-|.+-+|.+++++|.+++++-.++..-.+
T Consensus 113 ~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~ 191 (735)
T KOG3626|consen 113 VGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEY 191 (735)
T ss_pred hhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhChHHhcCcchh
Confidence 3667777788889999999999999999999999999999999999 67889999999999999999987422211000
Q ss_pred -CC---------------CCcccccccc----CCCC--CccchhH-HHHHHHHHHHHHhccCcccchhhhhcccCCCCCc
Q 008719 87 -NQ---------------DNCDRISQLL----GSCE--PAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 143 (556)
Q Consensus 87 -~~---------------~~~~~~~~~~----~~~~--~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 143 (556)
.+ +.+++..++- +.|+ .+.+..+ .+++++.++.|+|...+.+...+++=|...+++
T Consensus 192 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~- 270 (735)
T KOG3626|consen 192 ELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN- 270 (735)
T ss_pred hhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC-
Confidence 00 1122111211 1132 2222223 478899999999999999999999999988777
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc------------------ccc-hhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 144 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------------EHG-WGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 144 ~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~------------------~~g-w~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
-...+++.+.+..+|.++|.++++++.. +.| |+.-|++.+.+.++..+.++++.++
T Consensus 271 -----SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~ 345 (735)
T KOG3626|consen 271 -----SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKE 345 (735)
T ss_pred -----CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 7889999999999999999999988752 234 8999999999888888877777665
Q ss_pred cc
Q 008719 205 YR 206 (556)
Q Consensus 205 ~~ 206 (556)
.+
T Consensus 346 lp 347 (735)
T KOG3626|consen 346 LP 347 (735)
T ss_pred Cc
Confidence 44
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=129.07 Aligned_cols=134 Identities=9% Similarity=0.010 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccchhHH
Q 008719 31 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 110 (556)
Q Consensus 31 ~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (556)
....+..++..++.+++|+++|| +|||++++++.++.+++.+++++. .+..
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~ 649 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFG----------------------------NSES 649 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHH
Confidence 33455668889999999999999 899999999999988888877765 3345
Q ss_pred HHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 008719 111 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 190 (556)
Q Consensus 111 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~ 190 (556)
.+++.+++.|++.++..+...++.+|++|++. |++++++.+...++|+++||.+++.+... +...+|++.++.
T Consensus 650 ~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ 722 (742)
T TIGR01299 650 AMIALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAA 722 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHH
Confidence 56677788888888888999999999999988 99999999999999999999999988763 466788887777
Q ss_pred HHHHHHHHHH
Q 008719 191 MGISNMLFFI 200 (556)
Q Consensus 191 ~~~~~~~~~~ 200 (556)
.+++.++.++
T Consensus 723 lll~~ll~~~ 732 (742)
T TIGR01299 723 LACGGLLALK 732 (742)
T ss_pred HHHHHHHHHh
Confidence 6665555444
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.3e-10 Score=119.70 Aligned_cols=167 Identities=11% Similarity=-0.020 Sum_probs=124.8
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
.+++|.+..+++.|+++.+|.+..+...+.........++.+++|+++|| +||||++..+.++..++...+.....
T Consensus 263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~--- 338 (438)
T PRK09952 263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAFPFFMALE--- 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45678888999999999999998877666666777788889999999999 89999988887665554433332210
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHH-HHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS-VTV 162 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~l 162 (556)
. ......+++..++.+++.+...+...++.+|.+|.+. |+++.++.+.. ..+
T Consensus 339 --~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~~~~~~l 391 (438)
T PRK09952 339 --A-------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGYQVASVV 391 (438)
T ss_pred --c-------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHHHHHHHH
Confidence 0 0123344455666788888888888999999999877 99898886655 458
Q ss_pred HHHHHHHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHh
Q 008719 163 GAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIG 201 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~--gw~~~f~i~~~~~~~~~~~~~~~ 201 (556)
|+.++|.+.+++.+.. +|..++.+.++..+++.+..+..
T Consensus 392 gg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 392 GGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999997743 48888887777766666655543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.3e-10 Score=116.42 Aligned_cols=156 Identities=10% Similarity=-0.071 Sum_probs=133.7
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
..+++....+.+.|+++ +|.+..+.+.+.+...++..+..+++|++.|| +|+|+.+.++.+...+...+.+..
T Consensus 218 ~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~----- 290 (382)
T TIGR00902 218 QGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIGAI----- 290 (382)
T ss_pred HHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHHhH-----
Confidence 34566777888999965 99999999999999999999999999999999 899999999999999998888765
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHH-HHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTV 162 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~l 162 (556)
.+.+.++..++++|+..|...++...++.+. |+++ |+++.++++ ....+
T Consensus 291 -----------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~ 340 (382)
T TIGR00902 291 -----------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGG 340 (382)
T ss_pred -----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999987 7666 888888876 46689
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 008719 163 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 197 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~ 197 (556)
|.++|+.++|++.+++|+ ..|++.+...+++.++
T Consensus 341 g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 341 LIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 999999999999999886 6677766666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-10 Score=120.30 Aligned_cols=166 Identities=17% Similarity=0.134 Sum_probs=113.5
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhccc--ch-hHHHHHHHHHHHHHHHHHHHhhhc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GR-YWTIAIFTTIYLAGLTGITLCATM 81 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--Gr-r~~~~~~~~~~~i~~~l~~~~~~~ 81 (556)
..++++..+++.|+++++|++..+++...+.+.++..++.+++|+++|| + ++ ++......+...+....+...
T Consensus 257 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~~~~~~~~~~~~--- 332 (434)
T PRK11663 257 VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAGILLSVGSLWLM--- 332 (434)
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHHHHHHHHHHHHc---
Confidence 3455677788999988899999999999999999999999999999999 5 22 332222111111121111111
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
+. .+........+..|++............+|.+|+++ |++..++.+...+
T Consensus 333 ~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 383 (434)
T PRK11663 333 PF-----------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVGLFAY 383 (434)
T ss_pred cc-----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHHHHHH
Confidence 00 122223333344444332222233456678888777 9999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 162 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 162 lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
+|.+++|.+.|++.+..||+..|++.++..+++.+..+...+
T Consensus 384 ~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 384 LGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred HHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888876666555444333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=118.84 Aligned_cols=155 Identities=15% Similarity=0.065 Sum_probs=121.2
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHH-HHHHHhhhcc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL-TGITLCATMK 82 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~-~l~~~~~~~~ 82 (556)
...++.+..+++.|+++++|.+..+.+.+.....++..++.+++|+++|| +|||+.+..+..+..+.. .+.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~--- 307 (394)
T TIGR00883 232 TTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLAVPLLMALL--- 307 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 34566777889999988999999999999999999999999999999999 899998776555444332 2221110
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHH-HHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVT 161 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ 161 (556)
. ..+.+.+....++.|++.+...+...+++.|.+|+++ |+++.++.+ ....
T Consensus 308 ---~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~ 359 (394)
T TIGR00883 308 ---D-------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLAGA 359 (394)
T ss_pred ---c-------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhHHH
Confidence 0 0244566677888899999999999999999999887 888888754 4557
Q ss_pred HHHHHHHHHHHHhhcccc-hhHHHHHHHHH
Q 008719 162 VGAIVAFTLVVYIQMEHG-WGSAFGALAIA 190 (556)
Q Consensus 162 lG~~~g~~i~~~l~~~~g-w~~~f~i~~~~ 190 (556)
+|..++|.++|++.++.| |+..++.....
T Consensus 360 ~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 360 IFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 899999999999999888 88777665544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.6e-10 Score=115.73 Aligned_cols=166 Identities=13% Similarity=0.021 Sum_probs=119.4
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHH-HHHHHHHHHHHHHHHHHhhhccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~-~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
..++.+..+++.|+++.+|.+..+.+++.....++..++.+++|+++|| +|||+. +........++..+.+.......
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (399)
T TIGR00893 229 IGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAIIAGLVLSLLMFATN 307 (399)
T ss_pred hHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677788999999999999999999999999999999999999999 899861 11111111122111111100000
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
. ..+.........+.+.+.+ ..+...++.+|.+|+++ |++..++.+...++|
T Consensus 308 ~---------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g 359 (399)
T TIGR00893 308 Y---------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGLINSLGNLG 359 (399)
T ss_pred c---------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHHHHHHHHHh
Confidence 0 0122333333333444444 78999999999999888 999999999999999
Q ss_pred HHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 008719 164 AIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 199 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~ 199 (556)
..++|.+.|++.+..| |+..|++.++..+++.+..+
T Consensus 360 ~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 360 GIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 99999988877666655543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=120.60 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=114.1
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhccc--chhHHH-HHHHHHHHHHHHHHHHhhhc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTI-AIFTTIYLAGLTGITLCATM 81 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--Grr~~~-~~~~~~~~i~~~l~~~~~~~ 81 (556)
..+|++..++|.|++++.|++..+++++...+.++..++.+++|+++|| + |||+.. .....+..++.+++.+..
T Consensus 267 ~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~~~~~~~~~~~-- 343 (452)
T PRK11273 267 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWLNP-- 343 (452)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHHHHHHHHHHhc--
Confidence 3457788899999998899999999999999999999999999999999 7 555432 222233333333322210
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
. .+.....+..++.|.+..........+..|.+|++. |+++.++.+...+
T Consensus 344 -----~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 393 (452)
T PRK11273 344 -----A-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGY 393 (452)
T ss_pred -----c-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHHHHHHH
Confidence 0 123333444555555433323333456678899888 9999999999888
Q ss_pred HHHH-HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008719 162 VGAI-VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 199 (556)
Q Consensus 162 lG~~-~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 199 (556)
+|.. +||.+.|++.+.+||+..|++.++..+++++...
T Consensus 394 ~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 394 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8865 4799999999999999999887776666555444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=115.52 Aligned_cols=164 Identities=15% Similarity=0.079 Sum_probs=121.7
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHH-HHHHHHHHHHHHHHHhhhcc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-~~~~~~~i~~~l~~~~~~~~ 82 (556)
..++++...++|.|++ ++|++..+.+++.+.+.++..++.++.|+++|| +|||+.+. .+.+...++...+.....
T Consensus 235 ~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~~~-- 310 (402)
T TIGR00897 235 TIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYIPQ-- 310 (402)
T ss_pred HHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4567788888998985 589999999999999999999999999999999 89988764 233333333333222100
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 162 (556)
.. ..+.+..++..++.|++.+...+. .+...+.. +++ |++++++.+...++
T Consensus 311 -~~--------------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~------~g~~~g~~~~~~~l 361 (402)
T TIGR00897 311 -HF--------------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKH------KGAAMSVLNLSAGL 361 (402)
T ss_pred -cc--------------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cch------hHHHHHHHHHHHHH
Confidence 00 023455666777888888776553 45555643 345 99999999999999
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 163 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
|..++|.+++.+.+.+||..+|++.++..+++.++..+
T Consensus 362 g~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 362 SAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988876666555444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.9e-12 Score=137.38 Aligned_cols=196 Identities=15% Similarity=0.102 Sum_probs=3.0
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
+..+++......-+++.++++++++|++.+.+.++..+..++..++++| .-|-|.+-+|.++.++|++++++-.+....
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~~ 94 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSGP 94 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence 5566777777788999999999999999999999999999999999999 678889999999999999999875333211
Q ss_pred CC-------------CCCCc-----cccccccCCC----CCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCC
Q 008719 85 MP-------------NQDNC-----DRISQLLGSC----EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 142 (556)
Q Consensus 85 ~~-------------~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 142 (556)
.. ..+.| .......+.| +.....-+..++++.++.|+|.....+...+++=|..+++.
T Consensus 95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 10 01112 0000000111 11222235678899999999999999999999999999887
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---------------------ccc-hhHHHHHHHHHHHHHHHHHHH
Q 008719 143 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------------------EHG-WGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 143 ~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~---------------------~~g-w~~~f~i~~~~~~~~~~~~~~ 200 (556)
-...+++.+.+..+|.++|.++++.+.. |.| |..-|++.+...++..+.+++
T Consensus 175 ------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 175 ------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7888999999999999999999886642 234 888888888887777776666
Q ss_pred hcccccc
Q 008719 201 GTPLYRH 207 (556)
Q Consensus 201 ~~~~~~~ 207 (556)
+.++.+.
T Consensus 249 FPk~lp~ 255 (539)
T PF03137_consen 249 FPKKLPG 255 (539)
T ss_dssp -------
T ss_pred CCccCCC
Confidence 6665543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.9e-10 Score=116.82 Aligned_cols=145 Identities=16% Similarity=0.065 Sum_probs=117.3
Q ss_pred hhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008719 9 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 88 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 88 (556)
++..+++.|+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+.+.++..+..+........ .
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~-~-------- 325 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFAI-G-------- 325 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHHh-C--------
Confidence 444567889988999999999999999999999999999999999 899999888776553322222111 0
Q ss_pred CCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 008719 89 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 168 (556)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 168 (556)
.+.+.+.+..++.++..+...+...+++.|.+|+++ |++.+++.+...++|..+||
T Consensus 326 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~g~ 381 (405)
T TIGR00891 326 ------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGGALAP 381 (405)
T ss_pred ------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHHHHHH
Confidence 234555666677777777777888899999999888 99999999999999999999
Q ss_pred HHHHHhhcccc-hhHHHHHH
Q 008719 169 TLVVYIQMEHG-WGSAFGAL 187 (556)
Q Consensus 169 ~i~~~l~~~~g-w~~~f~i~ 187 (556)
.+.|++.++.| |+..+...
T Consensus 382 ~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 382 IIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHHHHhccccchhHHhh
Confidence 99999999888 87766653
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-08 Score=107.87 Aligned_cols=163 Identities=14% Similarity=0.050 Sum_probs=118.2
Q ss_pred HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcc--cc--hhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008719 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPN 87 (556)
Q Consensus 12 ~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~--~G--rr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (556)
.....|+++++|+++++.+...+...+.. ..-++.|.++|.+ +| ||.-++++.++.+++...++... .
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~---- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---A---- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---c----
Confidence 34556889999999999888776665544 4577889999993 24 44445556665555555555431 1
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
...+.....+..++..+|.+....+.-+++.|...++..+ |+...+..+....+|.+++
T Consensus 82 -----------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~ 140 (433)
T PF03092_consen 82 -----------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVG 140 (433)
T ss_pred -----------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHH
Confidence 0023445566777889999999999999999998655422 8889999999999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 168 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 168 ~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
..++|.+.+..+++..|.+.+.+..+..+..+...+
T Consensus 141 ~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 141 SLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred HHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999888776655544444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=114.81 Aligned_cols=164 Identities=15% Similarity=0.034 Sum_probs=119.6
Q ss_pred HHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccc
Q 008719 16 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 95 (556)
Q Consensus 16 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (556)
+++.+++|++..+.++....+.++..++.+++|+++|| +|||+.+.++.++..++.+++.+...... ++
T Consensus 308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------- 376 (481)
T TIGR00879 308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFV--TG-------- 376 (481)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhccc--CC--------
Confidence 34446789999889999999999999999999999999 89999999998888877777664211000 00
Q ss_pred cccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 96 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 175 (556)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~ 175 (556)
..+..+...+....+..+.......+....+..|.+|+++ |+++.++.+...++|.+++|.+.+++.
T Consensus 377 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 377 -------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred -------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000122223222233333333345777788899999887 999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 176 MEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 176 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
++.+|+++|++.++..+++.+..++..+
T Consensus 444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 444 ESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HhcCccceehhHHHHHHHHHHHHheecc
Confidence 8889999999888776666665554444
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-09 Score=114.73 Aligned_cols=167 Identities=11% Similarity=0.079 Sum_probs=124.9
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHH-HHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~-~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
+.+....+.++|+.+++|++..+.+++.. ...++..++.+++|+++|| +|||+.+.++.++.+++..+.......
T Consensus 237 ~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l~~~--- 312 (491)
T PRK11010 237 GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLLSIT--- 312 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 34455667788888889999999999985 5568999999999999999 899998877666555544333221100
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
. .+...+....++..+..|...+...++..+..+++. +++.+++.+...++|.
T Consensus 313 -~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg~ 365 (491)
T PRK11010 313 -D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVGR 365 (491)
T ss_pred -c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHHH
Confidence 0 123334445555555555555667788888888877 7888999999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
.+++.+.|++.+.+||+..|.+.++..+.+.++....++
T Consensus 366 ~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 366 VYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988889999999999999999988888877777666544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=106.60 Aligned_cols=164 Identities=16% Similarity=0.093 Sum_probs=135.6
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
.+.|...+++.+++++..|+|.++.++++..|.++..++..++|+++|| +.|+++.....+.++..+.+.+..
T Consensus 225 ~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~----- 297 (394)
T COG2814 225 TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTG----- 297 (394)
T ss_pred cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhc-----
Confidence 4678889999999999999999999999999999999999999999999 788888888888777777766641
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.+.+...+..++-|++.+........-.++.. ++. ++.+.+++....|+|.
T Consensus 298 ----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~a~sl~~aa~nlgi 348 (394)
T COG2814 298 ----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADLAGSLNVAAFNLGI 348 (394)
T ss_pred ----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHHHHHHHHHHHHHHH
Confidence 34455556666677777766666666666633 344 7899999999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
.+|.+++|.+.+++|+....++.++..+++..+.+...++
T Consensus 349 a~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 349 ALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988888877665543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=116.91 Aligned_cols=158 Identities=7% Similarity=-0.033 Sum_probs=124.0
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcc-cchhHHHHHHH--HHHHHHHHHHHHhhhc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFT--TIYLAGLTGITLCATM 81 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~-~Grr~~~~~~~--~~~~i~~~l~~~~~~~ 81 (556)
+++++...+++.|++ ++|++..+++++.+...++..++.+++|+++||. +++|+...++. ++..++.+++...
T Consensus 255 ~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--- 330 (455)
T TIGR00892 255 LGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--- 330 (455)
T ss_pred HHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 344556677888886 4899999999999999999999999999999972 23343333333 3333333333332
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
.+.+.+++.+++.|++.+...++..+++.|.+|+++ +++.+++++...+
T Consensus 331 -------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 379 (455)
T TIGR00892 331 -------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVEC 379 (455)
T ss_pred -------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHHH
Confidence 356777888999999999999999999999998877 9999999999999
Q ss_pred HHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHH
Q 008719 162 VGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNML 197 (556)
Q Consensus 162 lG~~~g~~i~~~l~~~~-gw~~~f~i~~~~~~~~~~~ 197 (556)
+|..+||.++|++.+.. +|++.|++.++..+++.+.
T Consensus 380 lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 380 CAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 99999999999998877 4999999988776655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-09 Score=112.63 Aligned_cols=146 Identities=16% Similarity=0.084 Sum_probs=107.0
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHH-HHHHhhhcc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT-GITLCATMK 82 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~-l~~~~~~~~ 82 (556)
...++++..+++.|+++.+|++..++++....+.++..++.+++|+++|| +|||+.+..+.++..+... .......
T Consensus 251 ~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~-- 327 (434)
T PRK15075 251 TVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSWLVA-- 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 34567788889999998899999999999888999999999999999999 8999988776554332211 1111100
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH-
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT- 161 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~- 161 (556)
. .+.....+..++.+++.+...+...++..|.+|++. |++++++.+...+
T Consensus 328 ----~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~ 378 (434)
T PRK15075 328 ----A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATA 378 (434)
T ss_pred ----C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHH
Confidence 0 122233344555566666666767788999999888 9999998655554
Q ss_pred HHHHHHHHHHHHhhcccchh
Q 008719 162 VGAIVAFTLVVYIQMEHGWG 181 (556)
Q Consensus 162 lG~~~g~~i~~~l~~~~gw~ 181 (556)
++..++|.+.+++.+..|++
T Consensus 379 ~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 379 IFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHhhhHHHHHHHHHHhcCCc
Confidence 45778999999999988854
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.1e-09 Score=112.16 Aligned_cols=170 Identities=14% Similarity=0.050 Sum_probs=138.5
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchh--HHHHHHHHHHHHHHHHHHHhhhcc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr--~~~~~~~~~~~i~~~l~~~~~~~~ 82 (556)
-+...+......|.++++|++..|...+.....+...++++++|++.|| +|.| ++++++.++..+-.+.-.+.....
T Consensus 295 dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~ 373 (477)
T PF11700_consen 295 DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLFGFWPS 373 (477)
T ss_pred HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3566778888899999999999999999999999999999999999999 8999 888888877644333222211000
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 162 (556)
.... .+.+.+++.-++.|+..|...+..-++.++..|+++ .+.+|+++......
T Consensus 374 ~~g~--------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ 427 (477)
T PF11700_consen 374 FFGL--------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKA 427 (477)
T ss_pred ccCc--------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHH
Confidence 0000 355678888889999999999999999999999988 89999999999999
Q ss_pred HHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHh
Q 008719 163 GAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 201 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~ 201 (556)
.+.+||++.|.+.+..| -|..++...++.++++++++..
T Consensus 428 ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 428 SSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998877 8888888777777777666543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-09 Score=112.87 Aligned_cols=163 Identities=12% Similarity=0.005 Sum_probs=123.0
Q ss_pred HhHHHHHHH-hhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccch-hHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 12 VNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 12 ~~~~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
+.+-+|+++ +.+.+.+-.|+++++..++..+..+..|+...| .|. |+-++.+.++..+|.++....+..|
T Consensus 55 ~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli~s~ii~~~g~llY~~l~~~~------- 126 (488)
T KOG2325|consen 55 TSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLIVSFLIAIIGNLLYLALAYVP------- 126 (488)
T ss_pred eecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 344477764 478888899999999999999999999999999 664 7777889999999999984332211
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
+ ...+.+.++|++.|+|.|.. ...-+++++....++ |.|+++....+..+|..+||.
T Consensus 127 ---------------~-~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d------R~rA~a~~~~~~vlg~ilGp~ 183 (488)
T KOG2325|consen 127 ---------------N-GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED------RPRAFAATSGGFVLGIILGPT 183 (488)
T ss_pred ---------------c-chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc------hHHHHHHhhhHHHHHHHHhHH
Confidence 1 26688999999999998765 566788888877777 999999988888889988888
Q ss_pred HHHHhhc-------------ccchhHHHHHHHHHHHHHHHHHHHhcccc
Q 008719 170 LVVYIQM-------------EHGWGSAFGALAIAMGISNMLFFIGTPLY 205 (556)
Q Consensus 170 i~~~l~~-------------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 205 (556)
+...+.. ..-|..+-|+.++.-++.+++.....++.
T Consensus 184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 7755431 11245666777776666666665555543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=108.31 Aligned_cols=129 Identities=17% Similarity=0.111 Sum_probs=105.1
Q ss_pred HHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccchhHHHHHHHH
Q 008719 37 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL 116 (556)
Q Consensus 37 ~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (556)
.+...+.+++.|.++|+ +|||..+.+.+....+.-+...+. . +++.+
T Consensus 72 ~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~-----------------------------~-~~~~~-- 118 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQ-----------------------------G-YWFFL-- 118 (463)
T ss_pred HHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHH-----------------------------H-HHHhh--
Confidence 57888999999999999 899999999988888777766663 2 23332
Q ss_pred HHHHH--hccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 008719 117 YITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 194 (556)
Q Consensus 117 ~l~g~--g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~ 194 (556)
+.++ +.+.......++++|...+++ |...+++.+.+...+..++|.+++++....|.-.+|.++.++.++.
T Consensus 119 -~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~ 191 (463)
T KOG2816|consen 119 -LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILS 191 (463)
T ss_pred -hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 3333 334556777899999999887 9999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhcccc
Q 008719 195 NMLFFIGTPLY 205 (556)
Q Consensus 195 ~~~~~~~~~~~ 205 (556)
.+-.....|+.
T Consensus 192 ~~y~~~~l~Es 202 (463)
T KOG2816|consen 192 LLYMLLFLPES 202 (463)
T ss_pred HHHHhhccccc
Confidence 77766666653
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.6e-09 Score=110.23 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=109.5
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
...+|++..+++.|+++.+|.+..+.+...+...++..++.++.|+++|| +|||+.+.++.++..+.......... .
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~--~ 332 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQ--N 332 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHH--c
Confidence 45678889999999998899999999998888888888999999999999 89999887766544333221211100 0
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH-
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV- 162 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l- 162 (556)
. .+.........+.+++.+...+....+.+|.+|++. |+++.++.+...++
T Consensus 333 --~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~ 384 (432)
T PRK10406 333 --V--------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANAL 384 (432)
T ss_pred --C--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHH
Confidence 0 111211111222223333334556788999999988 99999998876654
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 163 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
.....|.+.+.+.....|...++..++..+++.+..++
T Consensus 385 ~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 385 FGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34457877786644333666666665555555554444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=110.73 Aligned_cols=143 Identities=10% Similarity=-0.051 Sum_probs=115.6
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
++.......+.|++..+|.++.+++++.....++..++.++.|+++|| +|||+++..+..+..++..++.....
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~----- 349 (471)
T PRK10504 276 GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVSLLFMLVAL----- 349 (471)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHhccc-----
Confidence 333444567778887899999999999999999999999999999999 89999999888887777666554310
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 165 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 165 (556)
. .+.+.+.+..++.|++.+...+....+..+..|+++ ++.++++.+....+|..
T Consensus 350 -~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ 403 (471)
T PRK10504 350 -L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMIMQLSMS 403 (471)
T ss_pred -c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHHHHHHHH
Confidence 0 223344556777889999888889999999999887 99999999999999999
Q ss_pred HHHHHHHHhhcccch
Q 008719 166 VAFTLVVYIQMEHGW 180 (556)
Q Consensus 166 ~g~~i~~~l~~~~gw 180 (556)
+|+.++|.+.+..|+
T Consensus 404 ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 404 IGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999988766555
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.5e-09 Score=108.08 Aligned_cols=138 Identities=10% Similarity=0.015 Sum_probs=117.8
Q ss_pred hhhhH-HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 7 YFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 7 ~~~~~-~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
+++.. ...+.|+++.+|.+..+.+++...+.++..++.++.|++.|| +|||+.+..+..+.+++..+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~------- 297 (365)
T TIGR00900 226 FAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGLAILVVGLT------- 297 (365)
T ss_pred HHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHhh-------
Confidence 34444 566777777799999999999999999999999999999999 899999888877776666655553
Q ss_pred CCCCCccccccccCCCCCccch-hHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
. +.+.+++..++.|++.+...+...+++.|..|+++ |++..++.+...++|.
T Consensus 298 ---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~ 350 (365)
T TIGR00900 298 ---------------------PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFSLSHAAW 350 (365)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHH
Confidence 2 35677888899999999999999999999999887 9999999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 008719 165 IVAFTLVVYIQMEHG 179 (556)
Q Consensus 165 ~~g~~i~~~l~~~~g 179 (556)
.++|.++|++.+.+|
T Consensus 351 ~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 351 PLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999987653
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-08 Score=105.04 Aligned_cols=156 Identities=12% Similarity=-0.071 Sum_probs=119.8
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 87 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (556)
+......+.|+.+++|+++.+.++......++..++.++.|+++|| +|||+.+.++.++..++..+........ +
T Consensus 232 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~- 306 (406)
T PRK15402 232 LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLLLAALATVIS---S- 306 (406)
T ss_pred HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHcc---c-
Confidence 3444556788888899999999998888888899999999999999 8999999999888888877776642100 0
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
.+.++++++.++.|+|.+...+......... ++++ |++..+..+....+|..+|
T Consensus 307 -------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~~~~~~~~~~g 360 (406)
T PRK15402 307 -------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMGMLSMLIFTVG 360 (406)
T ss_pred -------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHHHHHHHHHHHH
Confidence 2456677888889999998877766655433 3344 8999999999999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHH
Q 008719 168 FTLVVYIQMEHGWGSAFGALAIAMGIS 194 (556)
Q Consensus 168 ~~i~~~l~~~~gw~~~f~i~~~~~~~~ 194 (556)
+.+++++.+..++....+...+..++.
T Consensus 361 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 361 IELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999988777665555544444433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-09 Score=112.72 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=111.3
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHH---HHHHHhhhc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL---TGITLCATM 81 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~---~l~~~~~~~ 81 (556)
..+|++..+++.|+++..|++..++++....+.++..++.+++|+++|| +|+++....+..+..+.. .++...
T Consensus 265 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 340 (438)
T TIGR00712 265 LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLVTIAVIVYWMN--- 340 (438)
T ss_pred HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHHHHHHHHHhc---
Confidence 3456788889999998899999999999999999999999999999999 765432222332222211 111111
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
+. .+.+...+..++.|++..+..........|.+|+++ |+++.++.+...+
T Consensus 341 ----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 391 (438)
T TIGR00712 341 ----PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGY 391 (438)
T ss_pred ----CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhchHHH
Confidence 00 122333344445555433322233346678888877 9999999988888
Q ss_pred HH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 162 VG-AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 162 lG-~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
+| .++||.+.|.+.++.||...|.+.++..+++.+..+.
T Consensus 392 ~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 392 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred hhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 77 5789999999999899999998777665555554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=106.72 Aligned_cols=152 Identities=7% Similarity=-0.100 Sum_probs=121.3
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
++.+....++.|++ +.|.+..+.+.+.+...++..+..++.|++.|| +|+|+.+..+.+...++.++++..
T Consensus 220 ~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~------- 290 (382)
T PRK11128 220 SHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRWGLMGST------- 290 (382)
T ss_pred HhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 34456677788885 589999999999998889999999999999999 899999999988888877766654
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHH-HHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGA 164 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~ 164 (556)
.+.+.+++..++.|++.+...+....+..+. ++++ +++..+... ....+|.
T Consensus 291 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~ 342 (382)
T PRK11128 291 ---------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSI 342 (382)
T ss_pred ---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHH
Confidence 4667788899999999999888888888775 4444 677777765 5567888
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISN 195 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~ 195 (556)
.+||.++|++.+.+|+ ..|+..++..++++
T Consensus 343 ~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 343 AIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 9999999999998887 46666555544443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-08 Score=107.87 Aligned_cols=143 Identities=15% Similarity=0.038 Sum_probs=106.3
Q ss_pred hhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008719 9 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 88 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 88 (556)
.+..+++.|+++ .|.+..+.+.+.+.+.++..++.+++|+++|| +|||+.+..+.++..++..+......
T Consensus 249 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 318 (426)
T PRK12307 249 PIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIPQ-------- 318 (426)
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 356678888875 69999999999999999999999999999999 89999998888776655544433200
Q ss_pred CCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 008719 89 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 168 (556)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 168 (556)
.....+.+..+..+.+..+..+....++.|.+|++. |++++++.+...++|..+||
T Consensus 319 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp 374 (426)
T PRK12307 319 ------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNS 374 (426)
T ss_pred ------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHH
Confidence 122222222222333333344556678889999887 99999999999999999999
Q ss_pred HHHHHhhcccchhHHHH
Q 008719 169 TLVVYIQMEHGWGSAFG 185 (556)
Q Consensus 169 ~i~~~l~~~~gw~~~f~ 185 (556)
.+.|++.+.+|+....+
T Consensus 375 ~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 375 MAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHHcccHHHHHH
Confidence 99999999888655433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=110.40 Aligned_cols=158 Identities=11% Similarity=0.037 Sum_probs=104.3
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhH-------HHHHHHHHHHHHHHHHHHhhh
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-------TIAIFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-------~~~~~~~~~~i~~~l~~~~~~ 80 (556)
+++..+++.|+.+++|++..+++.+.+.+.++..++.+++|+++|| +|||+ ...++.++..+...+....
T Consensus 269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~-- 345 (476)
T PLN00028 269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQTLGGVFCIWLGRA-- 345 (476)
T ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHHHHHHHHHHhccc--
Confidence 4456678899988899999999999999999999999999999999 78762 2222222222212211111
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
.+.....+..++.+++.+...+...++..+..| +. |+...++.....
T Consensus 346 --------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~g 392 (476)
T PLN00028 346 --------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVISGLTGAGG 392 (476)
T ss_pred --------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhhhhhhccc
Confidence 233334444455555555444555555555443 34 888998887777
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc
Q 008719 161 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 202 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 202 (556)
++|..+++.+.+ .....+|+..|++.++..+++.++.++.+
T Consensus 393 ~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 393 NVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred cHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 778777776544 22345699999998887777766665544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=105.98 Aligned_cols=162 Identities=7% Similarity=-0.093 Sum_probs=118.0
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHH-HHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
.+........++|+++ +|++.++.+++...... ...++.+++|++.|| +|+|+.+..+..+..+.......... ..
T Consensus 222 ~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~-~~ 298 (390)
T TIGR02718 222 MTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLALLWFAQAA-FW 298 (390)
T ss_pred HHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHH-cc
Confidence 4455566677888875 79999999999988764 666778999999999 89999988877665333222221110 00
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCC-CCcchhhhhhhHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~l 162 (556)
. . .+....+....+.+++.|...+...+...+..++ +. +++.++..+...++
T Consensus 299 ~-~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~l 351 (390)
T TIGR02718 299 L-A--------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQSTRDL 351 (390)
T ss_pred c-C--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHHHHH
Confidence 0 0 1223344445556667777777777777777665 45 89999999999999
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 008719 163 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 196 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~ 196 (556)
|..+||.++|++.+..||+..|++.++..+++.+
T Consensus 352 g~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 352 GELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887776555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=105.24 Aligned_cols=157 Identities=9% Similarity=-0.039 Sum_probs=110.4
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 87 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (556)
+.....+++|+++.+|.+..+.+++.+.+.++..++.++.|+++|| +|||+.+..+..+..++.++.....
T Consensus 216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~~~~~~-------- 286 (382)
T PRK10091 216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLMLFFFG-------- 286 (382)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHHHHHHH--------
Confidence 3344556778888899999999999999999999999999999999 8999999988888777765554320
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhh-hcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF-GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
.+.+...+..++.+.|.+...+..... ..+..+++. ++.. ......++|..+
T Consensus 287 -------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~g~~~ 339 (382)
T PRK10091 287 -------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIAFNLGSAI 339 (382)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHHHHHHHHH
Confidence 122344445555556555444443333 333333322 4443 335567899999
Q ss_pred HHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHH
Q 008719 167 AFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 167 g~~i~~~l~~~-~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
||.++|++.+. .+|+..+.+.++...+.......
T Consensus 340 Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 340 GAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999998885 68999999887776655544433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.91 E-value=9e-09 Score=109.82 Aligned_cols=152 Identities=9% Similarity=-0.057 Sum_probs=105.7
Q ss_pred hhhhhhhHHhHHHHHHH-hhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHH-HHHHHHHHHHHHHHHHHhhhc
Q 008719 4 RMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYLAGLTGITLCATM 81 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~-~~~~~~~~~i~~~l~~~~~~~ 81 (556)
...++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++|| ++||+. +....++..++. +.... .
T Consensus 255 ~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~~~~-~~~~~-~- 330 (412)
T TIGR02332 255 TNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAAAGW-LLASA-T- 330 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHHHHH-HHHHh-c-
Confidence 45678889999999976 347788899999999999999999999999999 887764 333333333332 11111 0
Q ss_pred cccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 82 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
.+......+..+.++|.....+.......|.+|+++ |++++++.+...+
T Consensus 331 -------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~~~~ 379 (412)
T TIGR02332 331 -------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINATGN 379 (412)
T ss_pred -------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHHhhh
Confidence 011111111222233333333444455566777777 9999999999999
Q ss_pred HHHHHHHHHHHHhhcccc-hhHHHHHHHHH
Q 008719 162 VGAIVAFTLVVYIQMEHG-WGSAFGALAIA 190 (556)
Q Consensus 162 lG~~~g~~i~~~l~~~~g-w~~~f~i~~~~ 190 (556)
+|.+++|.+.|.+.+..| |++.|++.++.
T Consensus 380 ~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 380 IGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999998775 99998876654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=102.26 Aligned_cols=144 Identities=11% Similarity=0.060 Sum_probs=113.9
Q ss_pred hhHHhHHHHHHHh--hCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 9 GLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 9 ~~~~~~~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
++..+++.|+.+. +|+++.+.+...+.+..+..++.++++++.|| +|+||++.++..+..++.++....
T Consensus 158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~-------- 228 (310)
T TIGR01272 158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALT-------- 228 (310)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 4567789999754 79999999999999999999999999999999 899999988888777766544442
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
.+.. ...+.++.|++.+.+.|...+...+.++++.. ++. ++. .+..+|.++
T Consensus 229 --------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~-----~as--ai~-~~~~~Gg~i 279 (310)
T TIGR01272 229 --------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHTS-----QGS--GIL-CLAIVGGAI 279 (310)
T ss_pred --------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hhH--HHH-HHHHhcchH
Confidence 1111 22355578999999999999999998876531 444 343 566799999
Q ss_pred HHHHHHHhhcccchhHHHHHHHHH
Q 008719 167 AFTLVVYIQMEHGWGSAFGALAIA 190 (556)
Q Consensus 167 g~~i~~~l~~~~gw~~~f~i~~~~ 190 (556)
+|.+.|.+.+..|.+.+|++..+.
T Consensus 280 ~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 280 VPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHHHhccchHHHHHHHHH
Confidence 999999999988988888865544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=105.51 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=118.7
Q ss_pred hHHhHHHHHHHhh---CCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 10 LSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 10 ~~~~~~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
.....+.|+++.+ +.+..+.+.+.+...+...++.+..|++.|| +|||+.+.++.++..++..+...+
T Consensus 234 ~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~-------- 304 (396)
T TIGR00882 234 FDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFA-------- 304 (396)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhc--------
Confidence 3345677887665 5566678888888888899999999999999 899999999888888877665554
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHH-HHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAI 165 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~ 165 (556)
.+.+.++..+++.|++.+........+..+..+++. +++..+. ++....+|.+
T Consensus 305 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~~~~~lg~~ 358 (396)
T TIGR00882 305 --------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQFAKQLAMI 358 (396)
T ss_pred --------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHHHHHHHHHH
Confidence 355667778889998876665555566666666655 6666655 5578899999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 008719 166 VAFTLVVYIQMEHGWGSAFGALAIAMGISNML 197 (556)
Q Consensus 166 ~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~ 197 (556)
+++.++|++.+..||+.+|.+.++..++..+.
T Consensus 359 ~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 359 FLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776554443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-08 Score=102.82 Aligned_cols=170 Identities=14% Similarity=0.017 Sum_probs=132.5
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
++-++...++.|+++++|.+..+++.....+.+...+..+++|+|+|| +|.+|++.+.....+++..+.+.... . .
T Consensus 233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~~~~~~l~~~~~--~-~ 308 (417)
T COG2223 233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMALAAALLSLFLT--G-F 308 (417)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHHHHHHHHHcccc--c-c
Confidence 456778889999999999999999999999999999999999999999 89999999888888888777776411 0 0
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 165 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 165 (556)
.. ..+...++..-+..++..|.-...+..++...++++ -+...++.....++|..
T Consensus 309 ~~------------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga~G~lGGf 363 (417)
T COG2223 309 GH------------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGAIGGLGGF 363 (417)
T ss_pred cc------------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHHhcccccc
Confidence 00 023344444445555555655666677777777653 58888999999999998
Q ss_pred HHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 166 VAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 166 ~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
.-|...+...+..| +...|++.......+.++.+..+.+
T Consensus 364 ~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 364 FLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred chhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888777 9999999888888887776665554
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-08 Score=107.35 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=136.3
Q ss_pred hhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008719 9 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 88 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 88 (556)
.+...+|.+.++.+|.++...|++.+++.+|..++.++.+++.+| +++++.+..+.++++++.+.++++
T Consensus 236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal~---------- 304 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLALS---------- 304 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhcc----------
Confidence 344557788888999999999999999999999999999999999 899999999998888888777775
Q ss_pred CCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 008719 89 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 168 (556)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 168 (556)
.+.+..++..++.|++.........+.+.+..|++. |+|.++++......+..+|.
T Consensus 305 ------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~g~~~lGs 360 (524)
T PF05977_consen 305 ------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFFGGMPLGS 360 (524)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHHHHHHHHH
Confidence 566777888899999999988888999999999888 99999999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008719 169 TLVVYIQMEHGWGSAFGALAIAMGISNMLFF 199 (556)
Q Consensus 169 ~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 199 (556)
++.|.+.+.+|-+..+.+.++..+++.++..
T Consensus 361 ll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 361 LLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888776555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.1e-08 Score=104.54 Aligned_cols=156 Identities=10% Similarity=-0.054 Sum_probs=113.8
Q ss_pred HHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 008719 17 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 96 (556)
Q Consensus 17 yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (556)
++.+++|.+..+.++......+...++.+++|+++|| +|||+.++.+.++.+++.++++.... . .
T Consensus 296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~-~---~---------- 360 (479)
T PRK10077 296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFY-T---Q---------- 360 (479)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHh-c---C----------
Confidence 3445789888777887778888899999999999999 89999999999998888877765311 0 0
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHhccC-cccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH--
Q 008719 97 LLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY-- 173 (556)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~-- 173 (556)
..........++.+++.+. ..|+..++..|.+|+++ |++++++.+...++|.++++.+.+.
T Consensus 361 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 361 ----------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred ----------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1111222333444444443 34778899999999887 9999999999999999988666554
Q ss_pred ----hhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 174 ----IQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 174 ----l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
+.+.++|++.|++.++..+++.+..+...+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 425 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred hccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 345678999998887766666555544443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=109.73 Aligned_cols=140 Identities=16% Similarity=0.068 Sum_probs=108.9
Q ss_pred HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 008719 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 91 (556)
Q Consensus 12 ~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (556)
...+.|++..+| +..+.+++.....++..++.+++|+++|| +|||+++.++..+..++.++..+..
T Consensus 243 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~------------ 308 (437)
T TIGR00792 243 GVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLGYLIFFFAG------------ 308 (437)
T ss_pred chhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcc------------
Confidence 334445555555 56677888888899999999999999999 8999999999888888777665530
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcch-hhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 92 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
.+.+.+++..++.|++.+...+...++++|..+.++.+. +..++.++++.....++|..+|+.+
T Consensus 309 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i 373 (437)
T TIGR00792 309 ---------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL 373 (437)
T ss_pred ---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 234566677788899999999999999999877432111 1127889999999999999999999
Q ss_pred HHHhhcccch
Q 008719 171 VVYIQMEHGW 180 (556)
Q Consensus 171 ~~~l~~~~gw 180 (556)
.|++.+..||
T Consensus 374 ~g~ll~~~G~ 383 (437)
T TIGR00792 374 VGLILGIIGY 383 (437)
T ss_pred HHHHHHHcCC
Confidence 9999876666
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-08 Score=103.48 Aligned_cols=143 Identities=16% Similarity=0.146 Sum_probs=110.9
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhccc-chhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grr~~~~~~~~~~~i~~~l~~~~~~~~ 82 (556)
...++++..+++.|+++ .|.+..+.+.+.+.+.++..++.++.|+++|| + +||+.+.++.++..++..++....
T Consensus 210 ~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~--- 284 (355)
T TIGR00896 210 SGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGLCGLLFAP--- 284 (355)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHhh---
Confidence 34567778889999875 79999999999999999999999999999999 7 567777777777777766665531
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 162 (556)
.+.... ..++.|++.|...|...+...+..++++. ++...++.+...++
T Consensus 285 ------------------------~~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~ 333 (355)
T TIGR00896 285 ------------------------MHGLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAALSAMAQSIGYL 333 (355)
T ss_pred ------------------------hhHHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHHHHHHHHHHHHH
Confidence 111111 34678999999999887777765554321 68888888888899
Q ss_pred HHHHHHHHHHHhhcccc-hhH
Q 008719 163 GAIVAFTLVVYIQMEHG-WGS 182 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~g-w~~ 182 (556)
|..+||.+.|++.+++| |.+
T Consensus 334 ~~~~gp~~~G~l~~~~g~~~~ 354 (355)
T TIGR00896 334 LAALGPLFVGVLHDISGNWLM 354 (355)
T ss_pred HHHHHHHHHHHHHHHhcccCC
Confidence 99999999999998776 543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=104.84 Aligned_cols=147 Identities=17% Similarity=0.144 Sum_probs=107.9
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHH--HHHHHHHHHHhhhccc
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI--YLAGLTGITLCATMKV 83 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~--~~i~~~l~~~~~~~~~ 83 (556)
..+++..+++.|+++.+|.+..+.+++.+.+.++..++.+++|+++||..+||+........ ..++.......
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 305 (379)
T TIGR00881 231 VRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN----- 305 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC-----
Confidence 34566777889999999999999999999999999999999999999833344332221111 11111111110
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
+. .+.....+..++.|+......+....+..|.+|+++ |+++.++.+...++|
T Consensus 306 --~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g 358 (379)
T TIGR00881 306 --PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVGFFAYLG 358 (379)
T ss_pred --cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHHHhhhhh
Confidence 00 234455566666777666666666788899999887 999999999999999
Q ss_pred HHHHHHHHHHhhcccchhHHH
Q 008719 164 AIVAFTLVVYIQMEHGWGSAF 184 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~gw~~~f 184 (556)
..++|.+.|.+.+.+||+..|
T Consensus 359 ~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 359 GILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred hhhhhhhHHHHHHhhcccccC
Confidence 999999999999999998764
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=108.13 Aligned_cols=143 Identities=14% Similarity=0.163 Sum_probs=119.4
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
+++++....++.|+++.+|.++.++++......++..++.+++|++.|| +|||+.+.++..+..++..++.....
T Consensus 269 ~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~~~~~~~~~---- 343 (485)
T TIGR00711 269 LGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGFYWRAFTFT---- 343 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHhccCC----
Confidence 4567777888999999999999999999999999999999999999999 89999999998888887776663210
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
++ .+.+.+....++.|+|.+...+.......+..|+++ |+++.++.+...++|.
T Consensus 344 -~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~ 397 (485)
T TIGR00711 344 -PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFTRQLGG 397 (485)
T ss_pred -CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHHHHHHH
Confidence 11 344556667888999999888777777778888777 9999999999999999
Q ss_pred HHHHHHHHHhhccc
Q 008719 165 IVAFTLVVYIQMEH 178 (556)
Q Consensus 165 ~~g~~i~~~l~~~~ 178 (556)
.+|+.+.+.+.++.
T Consensus 398 ~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 398 SIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-08 Score=103.26 Aligned_cols=134 Identities=16% Similarity=0.065 Sum_probs=105.7
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
..++.+..+++ ++.+++|.+..+.+++.+.+.++..++.+++|+++|| +|||+.+... .+..+...++... .
T Consensus 264 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~-~---- 335 (398)
T TIGR00895 264 VGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLL-LLGAVFAVLVGST-L---- 335 (398)
T ss_pred HHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHH-HHHHHHHHHHHHH-h----
Confidence 34455556666 6667899999999999999999999999999999999 8998554433 3333332222221 0
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.+....++..++.|++.+...+...++..|.+|+++ |++++++.+....+|.
T Consensus 336 ----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~ 387 (398)
T TIGR00895 336 ----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIGRLGA 387 (398)
T ss_pred ----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHHHHHH
Confidence 244566777888999999999999999999999887 9999999999999999
Q ss_pred HHHHHHHHHh
Q 008719 165 IVAFTLVVYI 174 (556)
Q Consensus 165 ~~g~~i~~~l 174 (556)
.+||.++|++
T Consensus 388 ~~g~~~~G~l 397 (398)
T TIGR00895 388 IIGPILAGYL 397 (398)
T ss_pred HHHHHhHHhc
Confidence 9999999875
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-08 Score=107.68 Aligned_cols=140 Identities=14% Similarity=0.086 Sum_probs=118.3
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
.++++....++.|+++.+|.|+.+++.....+.++..++.+++|++.|| +|||+.+..+.++..++..++.....
T Consensus 273 ~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~~~l~~~~~---- 347 (495)
T PRK14995 273 ITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSFYGLAMTDF---- 347 (495)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHhcC----
Confidence 3566777788999999999999999999999999999999999999999 89999998888888877766554210
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
..+.+......++.|+|.|...+.......+..|+++ ++.+.++++...++|.
T Consensus 348 ---------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lG~ 400 (495)
T PRK14995 348 ---------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAYELGA 400 (495)
T ss_pred ---------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHHHHHH
Confidence 0233445667888999999999888888888888887 9999999999999999
Q ss_pred HHHHHHHHHhhc
Q 008719 165 IVAFTLVVYIQM 176 (556)
Q Consensus 165 ~~g~~i~~~l~~ 176 (556)
.+|+.+.+.+.+
T Consensus 401 ~~G~ai~g~i~~ 412 (495)
T PRK14995 401 GLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=100.15 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=106.8
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHH-HHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 91 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (556)
..+.|+.+++|++..+.+++..... ++..++.+++|++.|| +|||+.+.++..+..+..+.....+.. +
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~----~----- 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVT----P----- 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhc----C-----
Confidence 4456777889999999999987654 4688999999999999 899998887777666554444321110 0
Q ss_pred cccccccCCCCCccchhHHHHHHHH----HHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 92 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
.+.+.+.... +..|++.+...+....+..+.+|.++ + +......++|..++
T Consensus 301 ---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~ 355 (402)
T PRK11902 301 ---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYV 355 (402)
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHH
Confidence 1233344333 34556666667777777777766443 3 34444456777766
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc
Q 008719 168 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 202 (556)
Q Consensus 168 ~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 202 (556)
..++|++.+.+||+..|.+.++..+++.++.+...
T Consensus 356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999998888777665554433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.2e-08 Score=102.48 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=112.8
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 90 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 90 (556)
...+|.|+++..| ++.+.+++.+...++........+++.||.++.++.+..+.++..++..+++..
T Consensus 228 ~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------------ 294 (400)
T PRK11646 228 MLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------------ 294 (400)
T ss_pred HHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------------
Confidence 3456788876555 778889888887776665555556666553676777777877777777666654
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 91 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
.+.+.+.+..++.+++.+...|...++..+..|+++ |++.+++.....++|..+||.+
T Consensus 295 ----------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l 352 (400)
T PRK11646 295 ----------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIG 352 (400)
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccc
Confidence 344556667778888988888999999999999888 9999999999999999999999
Q ss_pred HHHhhccc---c-hhHHHHHHHHHHHHHHHH
Q 008719 171 VVYIQMEH---G-WGSAFGALAIAMGISNML 197 (556)
Q Consensus 171 ~~~l~~~~---g-w~~~f~i~~~~~~~~~~~ 197 (556)
+|++.+.. + ...++++.++..+++.+.
T Consensus 353 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 353 GGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred hHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 99998764 2 345665555554444443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-07 Score=99.07 Aligned_cols=150 Identities=10% Similarity=-0.015 Sum_probs=111.8
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHHhhhcccc
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVF 84 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i-~~~l~~~~~~~~~~ 84 (556)
++++...++++++.+++|++..+.+.+...+.++..++.++.|++.|| .+|+..+. +..+..+ +..+....
T Consensus 231 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~~~l~~-~~~~~~~~~~~l~~~~------ 302 (394)
T PRK10213 231 GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVKLALAG-APLVLAVSALVLTLWG------ 302 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHH-HHHHHHHHHHHHHHHh------
Confidence 344555565454556789999999999999999999999999999999 55444343 4333333 33333332
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.+.+.+.+..++.|++.+...+...+++.+..|+ + +++..+..+...++|.
T Consensus 303 ----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~lg~ 353 (394)
T PRK10213 303 ----------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGSIQVAVIQLAN 353 (394)
T ss_pred ----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHHHHHHHHHHHH
Confidence 3446667788889999999999999888888864 3 4566667777889999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHH
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMG 192 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~ 192 (556)
.+|+.++|++.+..|++..+...+....
T Consensus 354 ~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 354 TCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 9999999999999999988888766543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.5e-08 Score=102.84 Aligned_cols=153 Identities=10% Similarity=0.024 Sum_probs=114.6
Q ss_pred hhhhHHhHHHHH-HHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 7 YFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 7 ~~~~~~~~~~yl-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
.++...+++.|+ ++.+|.++.++++....+.++..++.+++|++.|| +|||+++..+..+..++..+..+.
T Consensus 274 ~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~------- 345 (438)
T PRK10133 274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFA------- 345 (438)
T ss_pred HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 344556778885 56789999999999999999999999999999999 899999988877766655444432
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 165 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 165 (556)
.+. .......+.|++.+.+.|...+...+.++++. +.+.++.. +..+|..
T Consensus 346 ---------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~-~~~~g~~ 395 (438)
T PRK10133 346 ---------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIV-MTIIGGG 395 (438)
T ss_pred ---------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHh-HHhccch
Confidence 111 22455677999999999999999999987642 33333333 2336788
Q ss_pred HHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHH
Q 008719 166 VAFTLVVYIQMEHG-WGSAFGALAIAMGISNML 197 (556)
Q Consensus 166 ~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~ 197 (556)
++|.+.|.+.+..| -+..|++..+..+.....
T Consensus 396 ~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 396 IVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 88889999988887 788888776654444433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=114.69 Aligned_cols=149 Identities=11% Similarity=0.019 Sum_probs=123.0
Q ss_pred hhhhHHhHHHHHHHhhCCChh-hHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 7 YFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
.+.+...++.|+++.+|++.. +.+++.+.+.++..++.+++|+++|| +++++.+.++.++.+++.+++...
T Consensus 248 ~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~------- 319 (1146)
T PRK08633 248 SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSLFLLPTA------- 319 (1146)
T ss_pred HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHHHHHHHh-------
Confidence 345566788899999999999 99999999999999999999999999 899998888888777777666654
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 165 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 165 (556)
.+.+.+++..++.|++.++..+...+++.+..|++. |++++++.+...++|.+
T Consensus 320 ---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~~~lg~~ 372 (1146)
T PRK08633 320 ---------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFLQNVGML 372 (1146)
T ss_pred ---------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHHHHHHHH
Confidence 355667778889999999999999999999999888 99999999999999998
Q ss_pred HHHHHHHHhhc-ccchhHHHHHHHHH
Q 008719 166 VAFTLVVYIQM-EHGWGSAFGALAIA 190 (556)
Q Consensus 166 ~g~~i~~~l~~-~~gw~~~f~i~~~~ 190 (556)
+++.+++.+.. .+++...|++.+..
T Consensus 373 ~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 373 LFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88887776654 23455566554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-07 Score=96.44 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=109.3
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
.+++.....+.|+++++|.++.+.+++.....++..++.+++|++.|| +|||+.+..+..+..++..++.......
T Consensus 221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 296 (385)
T TIGR00710 221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAVLLEITAILG--- 296 (385)
T ss_pred HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 345555666778888999999999999999999999999999999999 8999999888888777776665532100
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH-HHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT-VGA 164 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-lG~ 164 (556)
......++...++.|++.+...+.......|..| ++ |+++.++.+.... .|.
T Consensus 297 --------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~g~ 349 (385)
T TIGR00710 297 --------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTLRLVLGA 349 (385)
T ss_pred --------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHHHHHHHH
Confidence 0133455566777899999988888888888775 44 7888888777664 456
Q ss_pred HHHHHHHHHhhcccchhHHHHH
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGA 186 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i 186 (556)
+.++. .+.+.+..+|...+..
T Consensus 350 i~~~~-~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 350 IVGYL-VSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHH-HHhccccChHHHHHHH
Confidence 66665 4455554455544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-06 Score=89.10 Aligned_cols=155 Identities=16% Similarity=0.078 Sum_probs=111.2
Q ss_pred HHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccc
Q 008719 19 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 98 (556)
Q Consensus 19 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (556)
.++.|++..|++.+..+....+.+..++.|.++|| +||||..++..++++++++.--.
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~--------------------- 118 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHS--------------------- 118 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhc---------------------
Confidence 35789999999999999999999999999999999 89999999988888877754333
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhcc
Q 008719 99 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQME 177 (556)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~i~~~l~~~ 177 (556)
.++..++++|++-|++......+--+.....+.++.-++ ...+.-++... ..+.+-++++..++-++.+.
T Consensus 119 --------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~ 189 (354)
T PF05631_consen 119 --------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADW 189 (354)
T ss_pred --------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 477899999999999999998888776655544333211 11344443333 22223334444455566655
Q ss_pred cc--hhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 178 HG--WGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 178 ~g--w~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
.+ -..||..+.++..++.++.....++
T Consensus 190 ~~~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 190 FGFGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred hCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 54 4889999888877777665554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-07 Score=97.41 Aligned_cols=154 Identities=6% Similarity=-0.058 Sum_probs=116.1
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 87 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (556)
......++.|+++.+|.++.+.|++.....++..++.++.+++.|| .++|+++..+..+ .+...+++..
T Consensus 222 ~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~--------- 290 (393)
T PRK11195 222 ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ--------- 290 (393)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH---------
Confidence 3444556678888999999999999999999999999999999999 8999888777533 3333333332
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
.+.+...+..++.|++.+...+...+.+.+..|++. +++++.+..+...++|..++
T Consensus 291 -------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~ 346 (393)
T PRK11195 291 -------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLM 346 (393)
T ss_pred -------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHH
Confidence 345556677778999999988888888877644332 16999999999999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 008719 168 FTLVVYIQMEHGWGSAFGALAIAMGISNML 197 (556)
Q Consensus 168 ~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~ 197 (556)
..+.+.+ ...|-+..+.+.+...+++..+
T Consensus 347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 347 LGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 9888866 4577676776666555544443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=100.91 Aligned_cols=153 Identities=12% Similarity=-0.022 Sum_probs=117.9
Q ss_pred HhHHHHHHH--hhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 12 VNMVTFMFY--VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 12 ~~~~~yl~~--~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
...+.|+.. +.+.+....+++...+........++.|++.|| ++||+.+..+..+..++..+.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~---------- 295 (395)
T PRK10054 227 SCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFVIGLVGFIFSG---------- 295 (395)
T ss_pred hhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHcc----------
Confidence 455666643 345566677788888878777888899999999 8999999999888888877666531
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
.+.+.+.+..++.|+|.+...|+..+++.+..|++. |++.++... ...+|..+||.
T Consensus 296 -----------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~-~~~~G~~~Gp~ 351 (395)
T PRK10054 296 -----------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS-LGWLGAAINPL 351 (395)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH-HHHHHHHHHHH
Confidence 244556677889999999888999999999998877 888887644 56689999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008719 170 LVVYIQMEHGWGSAFGALAIAMGISNMLFF 199 (556)
Q Consensus 170 i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 199 (556)
++|++.++.|....|++.+....++.++..
T Consensus 352 ~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 352 VSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 999999999988888876655444444433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-07 Score=100.86 Aligned_cols=164 Identities=19% Similarity=0.102 Sum_probs=110.7
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHH--------HHHHHHHHHHHHHHH
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT--------IAIFTTIYLAGLTGI 75 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~--------~~~~~~~~~i~~~l~ 75 (556)
...++.+..++|.|+++.+|.+..+.++..+...++..++.+++|+++|| +++|+. +..+......+..++
T Consensus 274 ~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (465)
T TIGR00894 274 FWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIFNGIGGLGPGIFAY 352 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999999999999999999999 664421 111111111111111
Q ss_pred HHhhhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHH
Q 008719 76 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 155 (556)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 155 (556)
..... . .+.....+...+.+.+.++..+.......|..|. . ++...++
T Consensus 353 ~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~ 400 (465)
T TIGR00894 353 ALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------LGFIKGI 400 (465)
T ss_pred HHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------HHHHHHH
Confidence 11100 0 1223334444555555555555555555555543 4 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHHH
Q 008719 156 FYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 156 ~~~~~~lG~~~g~~i~~~l~~~---~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
.+...++|..++|.+.|++.+. .+|...|.+.++..+++.+....
T Consensus 401 ~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 401 TGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 9999999999999999988764 34889999888777766655443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.7e-06 Score=87.37 Aligned_cols=136 Identities=12% Similarity=0.249 Sum_probs=93.6
Q ss_pred cccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCC
Q 008719 341 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420 (556)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (556)
.+.+.+...-+++-++..+++.+.++ .+.+..|+.+.++=++.+...+
T Consensus 410 v~~a~~~~gEI~~~ffs~klI~kiGH-----------v~v~~lgLa~~~~Rf~~~S~L~--------------------- 457 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFKLIEKIGH-----------VNVMYLGLACNVGRFLYYSYLQ--------------------- 457 (618)
T ss_pred ehhhhhccchHHHHHHHHHHHHHhcc-----------cceeeehhhHHHHHHHHHHHhc---------------------
Confidence 34444555555555555544433332 2345667777666666666653
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHH-HHHhHHHHHHHHHHHHhhhccCCCCCCCCCccc
Q 008719 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA 499 (556)
Q Consensus 421 ~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~ 499 (556)
++|.+++.-++.|+-.+.+....-+|+...+|++.|.+++|+.. ...++|.-+|+++.|.+-...+
T Consensus 458 --n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg----------- 524 (618)
T KOG3762|consen 458 --NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG----------- 524 (618)
T ss_pred --CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-----------
Confidence 67888888899999999999999999999999999999999987 4455777777777776554333
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 008719 500 QNINTGRFDYLYWLLAVLSVINFCAFLYS 528 (556)
Q Consensus 500 ~~~~~~~~~~~f~~~~~~~~v~~i~~~~~ 528 (556)
-.-+|+..++.+++.++.....
T Consensus 525 -------~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 525 -------ARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHh
Confidence 1246888888777766554443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=92.15 Aligned_cols=142 Identities=18% Similarity=0.132 Sum_probs=114.9
Q ss_pred HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHHhhhccccCCCCCC
Q 008719 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDN 90 (556)
Q Consensus 12 ~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i-~~~l~~~~~~~~~~~~~~~~ 90 (556)
+..+.++++.+|+|+.+++.+.+.....+.+.+++.|.++|| +||+...+.+..+..+ +-.++.++
T Consensus 285 ~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~tl~~H~~l~Ft------------ 351 (459)
T KOG4686|consen 285 TLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACILTLLGHSGLFFT------------ 351 (459)
T ss_pred hhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHHHHHHhhhHHhh------------
Confidence 345678899999999999999999999999999999999999 7999777766665443 44455543
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 91 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
.+.-+++..+.|+.....-.+..+.++...|+++ .+++++..+...|+|-++.|.+
T Consensus 352 ------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Ii 407 (459)
T KOG4686|consen 352 ------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPII 407 (459)
T ss_pred ------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhh
Confidence 2345667778888888776667888999999888 9999999999999999999999
Q ss_pred HHHhhcccc---hhHHHHHHHHH
Q 008719 171 VVYIQMEHG---WGSAFGALAIA 190 (556)
Q Consensus 171 ~~~l~~~~g---w~~~f~i~~~~ 190 (556)
+|.+.++-| |--+|.+....
T Consensus 408 ag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 408 AGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred hheeecCCCchhhHHHHHHHHHH
Confidence 999987544 66666655544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-07 Score=101.89 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=105.9
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhH------------HHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 72 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~------------~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 72 (556)
+.+|++..+.+.+++ ++|++..+++. ......++..++.+++++++|| +|||++++++..+.+++.
T Consensus 302 ~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~~~~~ 379 (502)
T TIGR00887 302 IAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFILTVLF 379 (502)
T ss_pred HHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHH
Confidence 456777777777775 67887653322 1223344556678889999999 899999988888877776
Q ss_pred HHHHHhhhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhH
Q 008719 73 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 152 (556)
Q Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 152 (556)
.+.++.... .+ .+ ..+...-+...++..+..+....+.+|.+|++. |+++
T Consensus 380 ~~l~~~~~~----~~-------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~ 429 (502)
T TIGR00887 380 FVLGFAYNH----LS-------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTA 429 (502)
T ss_pred HHHHHHHHh----cc-------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHH
Confidence 666553100 00 11 111111111222233344566777899999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----------cchhHHHHHHHHHHHHHHHH
Q 008719 153 FNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNML 197 (556)
Q Consensus 153 ~~~~~~~~~lG~~~g~~i~~~l~~~----------~gw~~~f~i~~~~~~~~~~~ 197 (556)
.++.+....+|.+++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 430 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 430 HGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988763 33455677666655555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=97.86 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=129.1
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 87 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (556)
-++......|-.+++|++..|...+...-.....++++++|+|+|| +|-|+++.++.++..+.++..-..
T Consensus 269 ~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~--------- 338 (438)
T COG2270 269 NTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFL--------- 338 (438)
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHc---------
Confidence 3556667788888999999999999999999999999999999999 999999999999988776655543
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
.....+.+.-++.|+..|+..+..-++.++..|+++ -+++|+++......++.+|
T Consensus 339 -------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~g 393 (438)
T COG2270 339 -------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLG 393 (438)
T ss_pred -------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHH
Confidence 222445556677899999999999999999999988 7999999999999999999
Q ss_pred HHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 008719 168 FTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 199 (556)
Q Consensus 168 ~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~ 199 (556)
|++.+.+.+.+| -|..+....++..++++.++
T Consensus 394 p~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 394 PFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 999999887665 56666555555554544433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.8e-08 Score=103.67 Aligned_cols=148 Identities=15% Similarity=0.126 Sum_probs=112.3
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
+++......+.|+++.+|.+....++......++..++.++.++++|| +|+|+++.++.++..++.+++.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~~~~~~~------- 314 (448)
T PRK09848 243 STFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGYLLFFWV------- 314 (448)
T ss_pred HHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHc-------
Confidence 344444555667777888877666555555567788899999999999 899999999999888887766653
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcch-hhhhhhHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lG~ 164 (556)
+. .+.+.+++..++.|+|.+...+...++.+|..|.++.+. +..++..++.+.....+|.
T Consensus 315 ~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ 375 (448)
T PRK09848 315 SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQ 375 (448)
T ss_pred Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHH
Confidence 11 345667777888999999999999999999987654211 1125888899999999999
Q ss_pred HHHHHHHHHhhcccch
Q 008719 165 IVAFTLVVYIQMEHGW 180 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw 180 (556)
.+|+.+.+.+.+..||
T Consensus 376 aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 376 AIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999887655444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-07 Score=110.93 Aligned_cols=170 Identities=8% Similarity=-0.123 Sum_probs=122.3
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
.++++..+++.|+++.+|.+..+.+++.+.+.++..++.++.|+++|+ .++++.+..+.++..++.+.+.+.... ...
T Consensus 240 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 317 (1140)
T PRK06814 240 VGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLFGLDLAFASSS-VPA 317 (1140)
T ss_pred HHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHHHHHHHhcccc-ccc
Confidence 445677889999999999999999999999999999999999999998 677666666655555544434331000 000
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 165 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 165 (556)
+....+ -..-.. ...+.+.++++.++.|++.+...+...+++.+.+|++. |+++++..+....+|..
T Consensus 318 ~~~~~~-~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~~~~~~~~ 384 (1140)
T PRK06814 318 EPAQLK-SILVFL------SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANNVLNAAFMV 384 (1140)
T ss_pred cccccc-chhhhh------cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHHHHHHHHHH
Confidence 000000 000000 00234567788888999999999999999999999988 99999999999999999
Q ss_pred HHHHHHHHhhc-ccchhHHHHHHHHH
Q 008719 166 VAFTLVVYIQM-EHGWGSAFGALAIA 190 (556)
Q Consensus 166 ~g~~i~~~l~~-~~gw~~~f~i~~~~ 190 (556)
+|+++++.+.. ..++...+++.++.
T Consensus 385 ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 385 AGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999998873 44666666655544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-07 Score=90.95 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=124.8
Q ss_pred chhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008719 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 3 ~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~ 82 (556)
.++.||.++.++|.++. +.|+|..++|++++...+.+....+++-.+++|..-+|+..+.....+.+|...+.+.
T Consensus 220 qS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~---- 294 (395)
T COG2807 220 QSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLA---- 294 (395)
T ss_pred hHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh----
Confidence 46789999999999986 6899999999999999999999999999999985678888888888888898888765
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 162 (556)
| .+...+. -+++|+|.|+.+|....++.+..++.+. -++..++.+-..-+
T Consensus 295 ---P--------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgmaQg~GYl 344 (395)
T COG2807 295 ---P--------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGMAQGVGYL 344 (395)
T ss_pred ---h--------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHHhhhhhHH
Confidence 1 1222222 4889999999999999999998766542 45555555555556
Q ss_pred HHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHH
Q 008719 163 GAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 196 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~ 196 (556)
=+++||++.|++.+..| |+.+........++..+
T Consensus 345 lAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 345 LAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred HHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 66789999999998765 88777665555444333
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-05 Score=84.50 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccchhHHHH
Q 008719 33 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 112 (556)
Q Consensus 33 ~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (556)
..+-+....+.+++++.+.|+ .|.|+.+.++...+..-.+..-. .|...+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence 666778888999999999999 89999999998887755444444 356889
Q ss_pred HHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 008719 113 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 168 (556)
Q Consensus 113 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 168 (556)
++.-.+.|+|.+.....--.++.+..+++. +.|-.++.-.....+.++|.
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Gg 155 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGG 155 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999998887776 55555554444455555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.2e-07 Score=96.72 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=121.8
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
.++........+.|.++.+|.+ ...+++.....++..++.+++++++|| +|+||++..+..+..++.++..+...
T Consensus 238 ~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~--- 312 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALGFLLLFFLGP--- 312 (428)
T ss_pred HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHHHHHHHHHHh---
Confidence 3444455566777888888877 567788888999999999999999999 89999999999999999888877621
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcch-hhhhhhHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTV 162 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~l 162 (556)
.+.+.+++..++.|++.+...+...++++|..+.++.++ +...+..++.+.....+
T Consensus 313 -----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~ 369 (428)
T PF13347_consen 313 -----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI 369 (428)
T ss_pred -----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence 367889999999999999999999999999998654332 12257888889999999
Q ss_pred HHHHHHHHHHHhhcccch
Q 008719 163 GAIVAFTLVVYIQMEHGW 180 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~gw 180 (556)
|..+++.+.+.+.+..|+
T Consensus 370 ~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 370 GQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 999999999888665544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-06 Score=76.51 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=97.3
Q ss_pred ccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcch
Q 008719 344 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 423 (556)
Q Consensus 344 ~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (556)
....+..++..++.+++.|+++|| +.+..+..+..++.+...... +
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~~-----------------------~ 50 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALSS-----------------------N 50 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHhc-----------------------c
Confidence 345566777788888777776655 235556556655655544331 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCc
Q 008719 424 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 503 (556)
Q Consensus 424 ~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~ 503 (556)
.+......++.+++.+...+..+.++.|..|++.|++++++.+....+|..+++.+.+.+.+.. +|
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~------ 116 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL--------GW------ 116 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc--------ch------
Confidence 5556677888999999999999999999999999999999999999999999999988775422 23
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHh
Q 008719 504 TGRFDYLYWLLAVLSVINFCAFLYSA 529 (556)
Q Consensus 504 ~~~~~~~f~~~~~~~~v~~i~~~~~~ 529 (556)
.+.|++.+.+.++..+..+.+.
T Consensus 117 ----~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 117 ----RAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhcC
Confidence 3566777776666655554443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.6e-08 Score=101.99 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=122.0
Q ss_pred cCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccC
Q 008719 338 PVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT 417 (556)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (556)
..++++....+...++.|+++++.+|.-|++ ++.+|..+.+++++..++..
T Consensus 69 ~~Gll~~vf~v~~~i~sPl~gyLadryNR~~-----------v~~vG~~iW~~Av~~~~fs~------------------ 119 (493)
T KOG1330|consen 69 ELGLLQTVFIVVFMIASPLFGYLADRYNRKR-----------VIAVGIFIWTLAVFASGFSN------------------ 119 (493)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhhcCcce-----------EEeeHHHHHHHHHHHHHHHH------------------
Confidence 3466777888889999999999998877764 48889999998888877763
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCc
Q 008719 418 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNW 497 (556)
Q Consensus 418 ~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w 497 (556)
.+|.+++.-.+.|+||+...|...+++.+.+|.+.|+++.+++++....|+.+|..+...+.+.++ .|
T Consensus 120 -----~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~W 187 (493)
T KOG1330|consen 120 -----HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WW 187 (493)
T ss_pred -----HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ce
Confidence 577788899999999999999999999999999999999999999999999999877777766544 14
Q ss_pred ccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008719 498 LAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 533 (556)
Q Consensus 498 ~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~ 533 (556)
.+.|+..++++++..++.+++.++-+
T Consensus 188 ----------r~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 188 ----------RWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred ----------EEEEEeehHHHHHHHHHHHhhccCcc
Confidence 45689999999998888877776533
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.5e-07 Score=97.90 Aligned_cols=134 Identities=14% Similarity=0.062 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccchhHHH
Q 008719 32 AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 111 (556)
Q Consensus 32 ~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (556)
......+....+.+++++++|| +|||+.+.++.++.+++.+++..... ...+.
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~ 412 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV--------------------------DLYFL 412 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC--------------------------CchHH
Confidence 3344556777888999999999 89999999998888887776665410 11234
Q ss_pred HHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 008719 112 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 191 (556)
Q Consensus 112 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~ 191 (556)
..+..++.+++.+...+....+.+|.+|++. |++++++.+....+|.+++|.+.+ +. ..++..++++.++..
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~ 484 (505)
T TIGR00898 413 RTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLA 484 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHH
Confidence 4445556667777777888999999999988 999999999999999999999988 43 356777887777666
Q ss_pred HHHHHHHHH
Q 008719 192 GISNMLFFI 200 (556)
Q Consensus 192 ~~~~~~~~~ 200 (556)
+++.+..++
T Consensus 485 ~~~~~~~~~ 493 (505)
T TIGR00898 485 LLAGILTLF 493 (505)
T ss_pred HHHHHHHHc
Confidence 655554443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-07 Score=94.81 Aligned_cols=132 Identities=21% Similarity=0.283 Sum_probs=112.2
Q ss_pred hhhhhhHHhHHHHHHHhhCCC-hhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s-~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
+.++....+++.|+.+.+|.+ ..+.+++.+...+...++.++.|+++|| +|+|+...+......++...+.....
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--- 295 (352)
T PF07690_consen 220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALGLLLLPF--- 295 (352)
T ss_dssp HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCSHH---
T ss_pred HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 356677888889989999999 8999999999999999999999999999 89988888777777766666655421
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
..+....++..++.|++.+...+...++..|..|+++ |+++.++.+...++|
T Consensus 296 ----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~~ 347 (352)
T PF07690_consen 296 ----------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIGSLG 347 (352)
T ss_dssp ----------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHHHHH
T ss_pred ----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHH
Confidence 0244666668888999999999999999999999888 999999999999999
Q ss_pred HHHHH
Q 008719 164 AIVAF 168 (556)
Q Consensus 164 ~~~g~ 168 (556)
..+||
T Consensus 348 ~~igP 352 (352)
T PF07690_consen 348 GIIGP 352 (352)
T ss_dssp HHHHH
T ss_pred HHHCC
Confidence 99987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-07 Score=95.50 Aligned_cols=133 Identities=10% Similarity=0.033 Sum_probs=103.2
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHH-HHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 82 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~ 82 (556)
..+++++...++.|+++ +|++..+.+.+.+... ++..++.+++|+++|| +|||+.+..+.++..++..+......
T Consensus 222 ~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~-- 297 (356)
T TIGR00901 222 KLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALTNAGFVWLAS-- 297 (356)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 45677888889999987 9999999999888766 5778999999999999 89999998888887776665544210
Q ss_pred ccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHH
Q 008719 83 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 161 (556)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (556)
..+.. .. +-.+.+.+....++.+++.+...+...++..|.+|+++ |++.+++.+...|
T Consensus 298 ~~~~~-------------~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 355 (356)
T TIGR00901 298 NGHHD-------------GI--TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLSA 355 (356)
T ss_pred cCccc-------------cc--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHh
Confidence 00000 00 00234567778888999999999999999999999998 9999999877655
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-06 Score=91.05 Aligned_cols=67 Identities=13% Similarity=0.042 Sum_probs=57.8
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 78 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~ 78 (556)
....+.|+++++|+++.+.+.+.....++..++.++.|++.|| +|||+.+.++..+..++..++.+.
T Consensus 223 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 223 VNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567778899999999999999999999999999999999 899999999988888887777664
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-06 Score=92.28 Aligned_cols=172 Identities=13% Similarity=-0.002 Sum_probs=112.3
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
|-++..++|.|+++.+ +............+...+..+++|+++|| +|+||++.++.+...+........ +|..
T Consensus 268 fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~~~~~~l~--lp~~-- 340 (462)
T PRK15034 268 FIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIFSALLFLT--LPGT-- 340 (462)
T ss_pred HHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHHHHHHHHH--hccc--
Confidence 3445557788887755 33333333445678888999999999999 899999999888777665443332 1100
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCc----------c-----hhhhhhh
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK----------D-----YKTHLDR 151 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~----------~-----~~~~r~~ 151 (556)
...+.+.+.+..+...++.|.-..++..++.+.+|+++. + .+..-+.
T Consensus 341 ------------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 402 (462)
T PRK15034 341 ------------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAA 402 (462)
T ss_pred ------------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHH
Confidence 013456666666666666777777777777777764100 0 0112556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 152 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 152 ~~~~~~~~~~lG~~~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
..++......+|..+-|.+-|...+..| +...|+...+..+++..+.++...
T Consensus 403 v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 403 ALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred HHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777777777777777866666655544 888888888887777777666544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.8e-06 Score=88.95 Aligned_cols=145 Identities=12% Similarity=-0.012 Sum_probs=105.3
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
.++......+.|++ ++|++..+.++....+.++..++.++++++.|| +|||+.+.......+++...+.......
T Consensus 218 ~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 292 (401)
T PRK11043 218 AFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLLS--- 292 (401)
T ss_pred HHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 34455566777775 589999999998888888999999999999999 8999987666666555544333221100
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 165 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 165 (556)
+ .+...+.+...+.|++.+...|...+...+..| ++ |+++.++.+.....+..
T Consensus 293 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~~~ 345 (401)
T PRK11043 293 H--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGLCF 345 (401)
T ss_pred c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHHHH
Confidence 0 233445556677888999999988888777765 34 89999999988888888
Q ss_pred HHHHHHHHhhcccchhH
Q 008719 166 VAFTLVVYIQMEHGWGS 182 (556)
Q Consensus 166 ~g~~i~~~l~~~~gw~~ 182 (556)
.++.+.+.+.+......
T Consensus 346 ~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 346 LASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHccCCChhHH
Confidence 88888888876443333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-06 Score=90.80 Aligned_cols=155 Identities=10% Similarity=0.004 Sum_probs=103.0
Q ss_pred chhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccch---hHHHHH-HHHHHHHHHHHHHHh
Q 008719 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR---YWTIAI-FTTIYLAGLTGITLC 78 (556)
Q Consensus 3 ~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr---r~~~~~-~~~~~~i~~~l~~~~ 78 (556)
....+|++..+++.|+++ .|++.. .+........... +..++++|| ..| |+.... +..+.++.....+..
T Consensus 204 ~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~~~~~~~a~~~~~~~~~ 277 (368)
T TIGR00903 204 GVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIRAAALLIAAFFLALAFE 277 (368)
T ss_pred HHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 456788999999999964 688764 5555544444444 445788888 554 333232 333333333333322
Q ss_pred hhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHH
Q 008719 79 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 158 (556)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 158 (556)
.+.....+...+.+++.....+...++.+|.+|++. |+++.++.+.
T Consensus 278 ----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G~~~~ 323 (368)
T TIGR00903 278 ----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAGAIGF 323 (368)
T ss_pred ----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccchhhH
Confidence 122233444555667777777778899999999988 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008719 159 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 199 (556)
Q Consensus 159 ~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~ 199 (556)
..++|++.+|.+.+.+.. +-...|.+.++..+++.+..+
T Consensus 324 ~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 324 TSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887773 666677766666555555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.6e-07 Score=98.86 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=136.7
Q ss_pred chhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccc--hhHHHHHHHHHHHHHHHHHHHhhh
Q 008719 3 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 3 ~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--rr~~~~~~~~~~~i~~~l~~~~~~ 80 (556)
..++|+.-...++.|.. .+|.+..+++.++++..+...++.++.|+++|+ .. ++.+..+++++..++...+.++
T Consensus 310 ~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~gl~~~~~p~~-- 385 (509)
T KOG2504|consen 310 AYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIAGLARLFLPFA-- 385 (509)
T ss_pred HHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHHHHHHHHHHHh--
Confidence 34566666677778876 899999999999999999999999999999999 56 4455556666666665555554
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
++++.+++.-++.|++.|.+.......+.|..+.++ ...++++.....
T Consensus 386 --------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~ 433 (509)
T KOG2504|consen 386 --------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQ 433 (509)
T ss_pred --------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHh
Confidence 567888888889999999998888889999999988 999999999999
Q ss_pred HHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhc
Q 008719 161 TVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 202 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~ 202 (556)
.+++.+||.+.|++.+..+ |...|...++..+++....+...
T Consensus 434 gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 434 GIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999888 99999999988777776555444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.7e-06 Score=85.15 Aligned_cols=133 Identities=11% Similarity=-0.061 Sum_probs=88.5
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 87 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (556)
+.+....+.++.+.+|.++.+.+++.....++..++.+++|+++|| +|||+.+.++..+..+..+........ +
T Consensus 211 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~----~- 284 (377)
T PRK11102 211 FSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGIWLVVSALL----D- 284 (377)
T ss_pred HHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHH----h-
Confidence 3444455667777899999999999999999999999999999999 899999988887654433322221100 0
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHH-HHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS-VTVGAIV 166 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~lG~~~ 166 (556)
.+.+...++..+.+.+.+...+.......|..| +. +++..+..... ..+|..+
T Consensus 285 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~~~g~~~ 338 (377)
T PRK11102 285 -------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRFGIGAIV 338 (377)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHHHHHHHH
Confidence 233444444444555555555666666667655 44 77777775443 3466666
Q ss_pred HHHHHH
Q 008719 167 AFTLVV 172 (556)
Q Consensus 167 g~~i~~ 172 (556)
++.+++
T Consensus 339 g~~~~~ 344 (377)
T PRK11102 339 GALLSL 344 (377)
T ss_pred HHHHHh
Confidence 665544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00019 Score=75.37 Aligned_cols=154 Identities=10% Similarity=0.014 Sum_probs=111.6
Q ss_pred HhHHHHHHHh-hCCChhhHhHHHH-HHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 12 VNMVTFMFYV-MHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 12 ~~~~~yl~~~-lg~s~~~~~~~~~-~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
+++..|+.+. .|++..|...-+- ...-.....-++...+.|. +|-|++++++.+...+...++-..
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~----------- 91 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFG----------- 91 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4677899886 8999998874333 3344555667778889998 899999999888888887777765
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
++...+.+..+.-|++.+. ..+..+++-...|+++ -.++.++...+.-+|-.++.+
T Consensus 92 -----------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 92 -----------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSL 147 (412)
T ss_pred -----------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888876 4555667766667665 667777777778888888887
Q ss_pred HHHHhhc--ccchhHHHHHHHHHHHHHHHHHHHh
Q 008719 170 LVVYIQM--EHGWGSAFGALAIAMGISNMLFFIG 201 (556)
Q Consensus 170 i~~~l~~--~~gw~~~f~i~~~~~~~~~~~~~~~ 201 (556)
+|-.+.. ..+++....+......+++++.++.
T Consensus 148 lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 148 LGQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 7765554 3346777777776666666654443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.2e-06 Score=86.73 Aligned_cols=140 Identities=14% Similarity=0.028 Sum_probs=103.5
Q ss_pred ccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCc
Q 008719 342 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 421 (556)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (556)
...+..+...+..+..+.+.||++|| +.+..+.++.+++.+.....
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr-----------~~l~~~~~~~~~~~~~~~~a----------------------- 101 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRR-----------PVLITGALIFTLACAATLFT----------------------- 101 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHc-----------------------
Confidence 33444566667777888888887776 34666777776666655443
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCC
Q 008719 422 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 501 (556)
Q Consensus 422 ~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~ 501 (556)
.+.+.+++.-++.|++++...+..+.+..+..|++.|++.+++.+....+|..+|+.+.+.+.+. .+|
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~--------~gw---- 169 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF--------VHW---- 169 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCH----
Confidence 25677788889999999877777778888889999999999999999999999999888876552 234
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008719 502 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 533 (556)
Q Consensus 502 ~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~ 533 (556)
.+.|++.+++.++..+..++..++++
T Consensus 170 ------~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 170 ------KVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 56788888887777665555555543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-06 Score=92.27 Aligned_cols=126 Identities=12% Similarity=0.052 Sum_probs=93.6
Q ss_pred hHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccch
Q 008719 28 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 107 (556)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (556)
..+.+.....+...++.+++++++|| +|||+.+..+.++..++.....+. ++ .
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~-------~~-------------------~ 317 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFI-------PP-------------------S 317 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHh-------Cc-------------------c
Confidence 34455556667788888999999999 899999988877665443322221 11 3
Q ss_pred hHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 008719 108 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 180 (556)
Q Consensus 108 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~gw 180 (556)
+.+.+++..++.|++.+...+...++++|..+.++.+. +...+..++.+....++|..+|+.++|++.+..|+
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55667778889999999999999999999987544221 11145677888889999999999999998776665
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-06 Score=91.94 Aligned_cols=143 Identities=13% Similarity=0.000 Sum_probs=102.1
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 92 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (556)
..+.|++..++ +....+++.....++..++.++.++++|| +|||+++.++..+..++.+........ ++
T Consensus 253 ~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~----~~----- 321 (473)
T PRK10429 253 FAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVLSCGVLLLMGLA----AP----- 321 (473)
T ss_pred heeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhcc----Cc-----
Confidence 33334443344 45566677777778889999999999999 899999998888777666554432110 11
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcch-hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008719 93 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLV 171 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lG~~~g~~i~ 171 (556)
.+.+.+++.-++.|++.+...+...++++|..+..+.+. +...+..++...+...+|..+|+.+.
T Consensus 322 --------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~ 387 (473)
T PRK10429 322 --------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI 387 (473)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788999999999999999999987543211 11135578888889999999999999
Q ss_pred HHhhcccch
Q 008719 172 VYIQMEHGW 180 (556)
Q Consensus 172 ~~l~~~~gw 180 (556)
|++.+..|+
T Consensus 388 g~~l~~~Gy 396 (473)
T PRK10429 388 GVVLGLIGY 396 (473)
T ss_pred HHHHHHcCC
Confidence 988765555
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.9e-06 Score=80.30 Aligned_cols=140 Identities=21% Similarity=0.242 Sum_probs=110.4
Q ss_pred HHhhCCCh--hhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 008719 19 FYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 96 (556)
Q Consensus 19 ~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (556)
...++.+. .+.+++.+.+.+...++.++.|.++|| +|||+.+..+.....++.+++++...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~---------------- 91 (338)
T COG0477 29 LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPN---------------- 91 (338)
T ss_pred HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCcc----------------
Confidence 34555555 578999999999999999999999999 69998888888775666555555410
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCC-CCcchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHh
Q 008719 97 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYI 174 (556)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~lG~~~g~~i~~~l 174 (556)
...+.+++.|+.+|++.+...+...+++.|..++ ++ |+...+.... ...+|..+++.+++.+
T Consensus 92 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 92 ----------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred ----------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2468889999999999999999999999999987 33 8888888888 5788999998777776
Q ss_pred hcc--cchhHHHHHHHHHH
Q 008719 175 QME--HGWGSAFGALAIAM 191 (556)
Q Consensus 175 ~~~--~gw~~~f~i~~~~~ 191 (556)
... .+|+..|.+.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 156 LGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHhcchHHHHHHHHHHH
Confidence 654 57888666655543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.4e-06 Score=84.84 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=96.2
Q ss_pred HHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccchhHHHHHH
Q 008719 35 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 114 (556)
Q Consensus 35 ~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (556)
+-.+.-.-+.++.+++.|| +|||+++..+++++.+..+++..+.+ +. .-..++++
T Consensus 389 itslaefPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~c~~-----------------------rn-~~tvllf~ 443 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTTCKT-----------------------RN-AYTVLLFT 443 (528)
T ss_pred HHHHhhCCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHhcC-----------------------cc-hhHHHHHH
Confidence 3456677888999999999 99999999999999988887776521 11 23356777
Q ss_pred HHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 008719 115 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 194 (556)
Q Consensus 115 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~ 194 (556)
+|+.+ .+.+.+++.|.-|.+|... |+.+.+....+..+|+++.|+++ +...-+-..+..+.+...+++
T Consensus 444 arafi----sg~fqvaYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ila 511 (528)
T KOG0253|consen 444 ARAFI----SGAFQVAYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILA 511 (528)
T ss_pred HHHHH----hchheEEEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHH
Confidence 88776 4556788999999999998 99999999999999999999888 333333445555666555555
Q ss_pred HHHH
Q 008719 195 NMLF 198 (556)
Q Consensus 195 ~~~~ 198 (556)
.+..
T Consensus 512 gIav 515 (528)
T KOG0253|consen 512 GIAV 515 (528)
T ss_pred HHHh
Confidence 5443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-05 Score=83.72 Aligned_cols=165 Identities=8% Similarity=0.000 Sum_probs=123.9
Q ss_pred hhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 008719 9 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 88 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 88 (556)
....+...|+++.-|.+....+.+.+...+.-.+.-.+.+++-.| +|-|+++.++.+..++=..+.+.... |.
T Consensus 225 ~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~~-----~~- 297 (400)
T PF03825_consen 225 AYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFSD-----PW- 297 (400)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhcC-----Cc-
Confidence 345667888875434777778877777778888888999999999 89999999999999888777776411 00
Q ss_pred CCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHH-HHHHHHHH
Q 008719 89 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS-VTVGAIVA 167 (556)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~lG~~~g 167 (556)
............++|+..|...++...++.+..|++. |+++.+++... ..+|.++|
T Consensus 298 -----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG 354 (400)
T PF03825_consen 298 -----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIG 354 (400)
T ss_pred -----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHH
Confidence 0112223344567999999999999999999999998 99999998775 47999999
Q ss_pred HHHHHHhhcccchh------HHHHHHHHHHHHHHHHHHHhcc
Q 008719 168 FTLVVYIQMEHGWG------SAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 168 ~~i~~~l~~~~gw~------~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
..++|++.+++|-+ ..+.+.++..++..++++...|
T Consensus 355 ~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 355 SLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999876644 4555555555555555444433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.6e-05 Score=83.19 Aligned_cols=116 Identities=9% Similarity=0.026 Sum_probs=92.9
Q ss_pred CCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCc
Q 008719 339 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418 (556)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (556)
.+++.....+...+..+...++.+|+++| +.+..|.++.+++.++.......
T Consensus 40 ~g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----------~~~~~g~~l~~~g~~l~~~~~~~----------------- 91 (410)
T TIGR00885 40 AALVQSAFYGGYFIMAIPAAIFMKKLSYK-----------AGILLGLFLYALGAFLFWPAAEI----------------- 91 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHHhh-----------------
Confidence 35566667777788888888888887766 34778888888887665433210
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 419 ~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
.+++.++...++.|+|.+...+..+.++.+..|++.|++.+++.+..+.+|..+++.+.+.+..
T Consensus 92 ---~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 92 ---MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred ---ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2566777888999999999999999999999999999999999999999999999999887653
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-05 Score=82.34 Aligned_cols=138 Identities=12% Similarity=-0.064 Sum_probs=98.5
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 92 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (556)
..+.|+++.+|.+..+.+++......+..++.++.+++.|| +||+.... .....++.+........ .
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~----~------ 295 (394)
T PRK11652 229 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQS--VICCLLAGLLMWIPGWF----G------ 295 (394)
T ss_pred hChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHh----c------
Confidence 34567777799999999999888888888899999999999 67433322 22222222222111000 0
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008719 93 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 172 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~ 172 (556)
..+.+.++...++.|+|.+...|...++..|.+| ++ +++..++.....++|..+++.+++
T Consensus 296 -------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~~~~ 355 (394)
T PRK11652 296 -------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAALLSA 355 (394)
T ss_pred -------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 0234567777888999999999999999988886 34 788899999899999999999999
Q ss_pred HhhcccchhHH
Q 008719 173 YIQMEHGWGSA 183 (556)
Q Consensus 173 ~l~~~~gw~~~ 183 (556)
++.....+...
T Consensus 356 ~~~~~~~~~~~ 366 (394)
T PRK11652 356 MLPQTGQFSLG 366 (394)
T ss_pred HccCCchHHHH
Confidence 88765444433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.2e-05 Score=74.85 Aligned_cols=157 Identities=12% Similarity=0.044 Sum_probs=112.4
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
-...+++.+|+|.+|...+-.+-.++..+ .++.|.+.|+ +|++.++.+|.+...+|+.++..+..- +
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~-----------~ 90 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSG-----------R 90 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhC-----------c
Confidence 34578889999999999999999999986 5899999999 899999999999999999999886321 1
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
++ ....+.+++..++.|.+.+.+..+....-.+.||+ + |+++.++.-....+++.+=..+-..
T Consensus 91 i~----------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 91 IP----------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred cC----------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHH
Confidence 11 03557777777777777776666665556678874 5 8999999888877777765555544
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 174 IQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 174 l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
+...-.-...++++.....++++...+
T Consensus 154 ~f~~~~~~fll~la~~~~~v~l~~~~~ 180 (250)
T PF06813_consen 154 FFGDDPSSFLLFLAVLPAVVCLVAMFF 180 (250)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 444322343444444444444444444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.2e-05 Score=80.35 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=84.9
Q ss_pred CCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCc
Q 008719 339 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418 (556)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (556)
.+++.....+...+..++.+.+.||++|| +.+.++.++.+++.+++....
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~~~~~~~------------------- 88 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFLVDKFGPR-----------YTTTLSLLLLAIPCLWAGLAV------------------- 88 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 45566667777888888888888888766 346777788777777665542
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 419 ~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
.+.+.+++..++.|++.+. .++...++.+..|++.|++.+++......+|..+++.+.+.+..
T Consensus 89 ---~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 89 ---QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred ---hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1455566677888888664 45677889999999999999999998888888888877765543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=87.36 Aligned_cols=172 Identities=11% Similarity=0.108 Sum_probs=122.6
Q ss_pred hhhhHHhHHHHHHHhhCCChhh----HhHHHHHHHHHHHHHhhHHHH----hhhcccchhHH--HHHHHHHHHHHHHHHH
Q 008719 7 YFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGGF----LADAYLGRYWT--IAIFTTIYLAGLTGIT 76 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~----~~~~~~~~~~~~~~~~~~~G~----laD~~~Grr~~--~~~~~~~~~i~~~l~~ 76 (556)
|....+.++.|.++..+.+... .+++.+.-.+...+.+++..+ +.||-.+.+.. +.+|.++.++++..++
T Consensus 288 ~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~ 367 (475)
T TIGR00924 288 YAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFA 367 (475)
T ss_pred HHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3444555677776665544322 667777777777777776554 44441122333 3778888888887776
Q ss_pred HhhhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHH
Q 008719 77 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 156 (556)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 156 (556)
+..... +.+...+.+++.+..++.++|+....|+..++.++..|++. |++.++++
T Consensus 368 ~~~~~~-------------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~~g~~ 422 (475)
T TIGR00924 368 ASIWFA-------------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQMLGMW 422 (475)
T ss_pred HHHhhc-------------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHH
Confidence 541100 00112578899999999999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 157 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 157 ~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
.....+|..+++.+........+|...|...++..++..++++...|
T Consensus 423 ~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 423 FLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887777678888888777776666555555444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.1e-05 Score=83.25 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=114.6
Q ss_pred HHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 008719 17 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 96 (556)
Q Consensus 17 yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (556)
.+-++-|++..++.++.........+..+++.++.|| +|||+.++++..+..+...++.+.........
T Consensus 295 ~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~---------- 363 (485)
T KOG0569|consen 295 SIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVALLLMSIALFLSNSFG---------- 363 (485)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Confidence 3445689999999999999999999999999999999 89999999999999988888876643211000
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHhcc-CcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 97 LLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 175 (556)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~ 175 (556)
. +-....+++.++..++.+ +.-|...-+.+|.+|++. |..++++.+....+...+-...-..+.
T Consensus 364 --------~-~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~~~~~~w~~~fiv~~~fp~l~ 428 (485)
T KOG0569|consen 364 --------S-WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSVATAVNWLSNFIVGFAFPPLQ 428 (485)
T ss_pred --------h-HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111122333333333222 345888899999999988 999999988888777776666667777
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhcccc
Q 008719 176 MEHGWGSAFGALAIAMGISNMLFFIGTPLY 205 (556)
Q Consensus 176 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 205 (556)
+..|- +.|++-.+...+..+..+...|+.
T Consensus 429 ~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 429 NVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred HHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 76664 555555555555555555555543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=86.17 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=110.2
Q ss_pred CcchhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccch-------hHHHHHHHHHHHHHHH
Q 008719 1 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-------YWTIAIFTTIYLAGLT 73 (556)
Q Consensus 1 ~~~~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-------r~~~~~~~~~~~i~~~ 73 (556)
+++..+++.+...+|.|+.+.+|++..+.|++.+.-.+.+.+..+++|.++|| +-+ ++-+.-+......+..
T Consensus 268 f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~-l~~~~ls~t~~rkifn~i~~~~~ai~ 346 (466)
T KOG2532|consen 268 FGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR-LTFRILSETTVRKIFNTIAFGGPAVF 346 (466)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchHhHHHHHHhHHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999 433 1111111111222222
Q ss_pred HHHHhhhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHH
Q 008719 74 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 153 (556)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 153 (556)
+..++.. +. +........+.++..+.|+..++..-+. .|. .++. -+..+
T Consensus 347 l~~l~~~-----~~---------------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~----~~~-apq~------a~~l~ 395 (466)
T KOG2532|consen 347 LLVLAFT-----SD---------------EHRLLAVILLTIAIGLSGFNISGFYKNH----QDI-APQH------AGFVM 395 (466)
T ss_pred HHeeeec-----CC---------------CcchHHHHHHHHHHHHcccchhhhHhhh----hhc-cchH------HHHHH
Confidence 2222210 10 0000122222233333333333332221 111 2222 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHHHh
Q 008719 154 NFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFIG 201 (556)
Q Consensus 154 ~~~~~~~~lG~~~g~~i~~~l~~~---~gw~~~f~i~~~~~~~~~~~~~~~ 201 (556)
++.+...++...++|.+.+.+..+ ..|+.+|++.++..+++.+.+.+.
T Consensus 396 g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 396 GIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 999999999999999999998842 369999999999888877665544
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.4e-05 Score=74.45 Aligned_cols=151 Identities=18% Similarity=0.099 Sum_probs=93.1
Q ss_pred HHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 008719 17 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 96 (556)
Q Consensus 17 yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (556)
|+.+++|+...|.+.+.-+......+...+.|-|+|+ .|||+.-+ .+.+.+.++++.-. |
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracv----tycitYiLsCiTKh--------------S- 121 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACV----TYCITYILSCITKH--------------S- 121 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hcccccee----eehHHHHHHHHhhc--------------C-
Confidence 4556789999999998888888888999999999999 89999744 45566677777521 1
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhh-hcccCCCCCcchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHh
Q 008719 97 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF-GADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYI 174 (556)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~i~~~l 174 (556)
.++-.+.++|++-|+..+....+--+. ++|...++.. |.++...-++-.. ....+=++++.+.+-.+
T Consensus 122 ----------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F-eqqWls~TFskA~ffgNglvAiiaGlfgn~l 190 (454)
T KOG4332|consen 122 ----------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF-EQQWLSVTFSKAVFFGNGLVAIIAGLFGNLL 190 (454)
T ss_pred ----------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC-hHhhhhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 456778999999999999887776554 4444333221 1111222222111 11122233333333444
Q ss_pred hccc--chhHHHHHHHHHHHHHHHHH
Q 008719 175 QMEH--GWGSAFGALAIAMGISNMLF 198 (556)
Q Consensus 175 ~~~~--gw~~~f~i~~~~~~~~~~~~ 198 (556)
.++. |-..+|-.++.+..++..+.
T Consensus 191 vd~~slGPVAPFdAAacfLaigmAvi 216 (454)
T KOG4332|consen 191 VDTFSLGPVAPFDAAACFLAIGMAVI 216 (454)
T ss_pred HHHhccCCCCchHHHHHHHHHHHHHH
Confidence 4443 45677776666555544443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=82.72 Aligned_cols=162 Identities=8% Similarity=0.064 Sum_probs=127.7
Q ss_pred hhhhHHhHHHHHHHhh---CCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 7 YFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
|+..-...+.|.+.-+ +.+....|.+.+.-...-.+.-.+..++-+| +|.|+.++++..+.++=..+++++
T Consensus 236 Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~----- 309 (412)
T PF01306_consen 236 YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFA----- 309 (412)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhh-----
Confidence 3444445666776433 2334557788888888888999999999999 899999999999999888888886
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHH-HHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTV 162 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~l 162 (556)
++.+.+.+.+.+.|+..+....++..++++.+|++- .++...+. .....+
T Consensus 310 -----------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~~~~~~~~ 360 (412)
T PF01306_consen 310 -----------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVGFQFAKQI 360 (412)
T ss_dssp ------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHHHTTTHHH
T ss_pred -----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999876 67777773 567789
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 163 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 163 G~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
|.++.+.++|++.++.|++..|++-+..++...+...+..+
T Consensus 361 ~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 361 GIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 99999999999999999999998877776665555444444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=85.19 Aligned_cols=142 Identities=15% Similarity=0.053 Sum_probs=115.3
Q ss_pred HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 008719 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 91 (556)
Q Consensus 12 ~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (556)
+.+..|.+..+|.++.+..+.......+..++.++..+|.+| +|+|+++.++.++.+++.++.-+.. .
T Consensus 257 s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~-------~---- 324 (467)
T COG2211 257 SIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTP-------A---- 324 (467)
T ss_pred hhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhc-------C----
Confidence 344566677889999999899999999999999999999999 8999999999999999999888862 1
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhh-hhhhHHHHHHHHHHHHHHHHHHH
Q 008719 92 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT-HLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
.+..++++..++.++|.+...+...++++|..+..|.+..+ .-+-.++......-+|.+++..+
T Consensus 325 ---------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 325 ---------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred ---------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999998866544311 13455666777778899888888
Q ss_pred HHHhhcccch
Q 008719 171 VVYIQMEHGW 180 (556)
Q Consensus 171 ~~~l~~~~gw 180 (556)
.|++....|+
T Consensus 390 ~g~~L~~~Gy 399 (467)
T COG2211 390 PGWILGAIGY 399 (467)
T ss_pred HHHHHHHcCC
Confidence 8877654443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.1e-05 Score=84.58 Aligned_cols=111 Identities=12% Similarity=0.057 Sum_probs=84.6
Q ss_pred ccccchhHHHHHHHhhhhhhhh-hcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCC
Q 008719 342 MPVFPGLSIFLILSLYYSTFVP-LCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420 (556)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~l~~~-~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (556)
+.........+..++.+++.|| ++|| +.+.+|.++.+++.+.+....
T Consensus 55 i~~~~~~~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~--------------------- 102 (489)
T PRK10207 55 TFGAFAALVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL--------------------- 102 (489)
T ss_pred HHHHHHHHHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 3333444556666778888888 6666 457888888888877766542
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCch--hHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA--MKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 421 ~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
.....+++..+++++|.++..|...+++.+..|++ .|+.+.+++++..++|.++|+.+.+.+.+
T Consensus 103 -~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 103 -LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred -cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222446778889999999999999999999887 45778999999999999999999998876
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.6e-06 Score=85.02 Aligned_cols=143 Identities=18% Similarity=0.171 Sum_probs=118.1
Q ss_pred CcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcC
Q 008719 340 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 419 (556)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (556)
+++...-.+..++..|+.+.+.++++.|.+ +.+|+.++.++-++.++.+
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~ip-----------m~~Gl~vmf~sTilFafg~-------------------- 157 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYKIP-----------MVAGLFVMFLSTILFAFGN-------------------- 157 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhccccH-----------HHHHHHHHHHHHHHHHHcc--------------------
Confidence 344444556667888888888888877754 8999999999998888875
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchh-HHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 008719 420 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM-KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL 498 (556)
Q Consensus 420 ~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~ 498 (556)
+++.++++-.++|+|.++......+++.+.+|++. ||+++|+...+.++|..+||.+.|.+++..| +
T Consensus 158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G--k------- 225 (464)
T KOG3764|consen 158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG--K------- 225 (464)
T ss_pred ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC--C-------
Confidence 56788899999999999999999999999999887 6999999999999999999999999988655 1
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 499 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 499 ~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
..-|.+++.++++-...-++..+.++.
T Consensus 226 ---------~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 226 ---------SAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred ---------cCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 123899999998888887777765443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.1e-05 Score=83.91 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=104.1
Q ss_pred HhHHHHHHHHHHHHHhhHH----HHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCc
Q 008719 29 SSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 104 (556)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~----G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (556)
.+++.+.-.+...+..++. +++.|| ++..+.+.+|.++.+++++.++......+ + .
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~l~f~~l~~~~~~~~------------------~-~ 377 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCSGAFLVLPLGAKFAN------------------D-A 377 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhcC------------------C-C
Confidence 4555565665555565555 666777 67778899999999999888877532110 0 0
Q ss_pred cchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc--------
Q 008719 105 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------- 176 (556)
Q Consensus 105 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~-------- 176 (556)
...+.+++....+++|+|++...|+..+++.+..|++. |++.++.++....+|..++..+.+....
T Consensus 378 ~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~ 451 (500)
T PRK09584 378 GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPL 451 (500)
T ss_pred CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccch
Confidence 11456688899999999999999999999999999988 9999999888887777777666543221
Q ss_pred --ccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 177 --EHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 177 --~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
..++...|...++..++..++++...+
T Consensus 452 ~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 452 MSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123667777766655444444444343
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.8e-05 Score=80.61 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=90.1
Q ss_pred ccchhHHHHHHHhhhhhhhhh-cccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcc
Q 008719 344 VFPGLSIFLILSLYYSTFVPL-CRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 422 (556)
Q Consensus 344 ~~~~~~~~l~~~l~~~l~~~~-~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (556)
........+..++.+++.||+ +|| +.+.+|.++.+++.+++.... .
T Consensus 52 ~~~~~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~----------------------~ 98 (493)
T PRK15462 52 SAYCSLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE----------------------I 98 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh----------------------c
Confidence 334445566666778888887 655 346778888777765554221 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCch--hHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccC
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA--MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 500 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~ 500 (556)
+...+.+...+..+|.++..+...++..+..|++ .|..+.++.+...++|+.+++.+.+.+.+..| |
T Consensus 99 ~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G--------w--- 167 (493)
T PRK15462 99 HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS--------W--- 167 (493)
T ss_pred chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC--------h---
Confidence 1122334445566777777777888999999876 79999999999999999999999998865322 4
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHH
Q 008719 501 NINTGRFDYLYWLLAVLSVINFCAFLY 527 (556)
Q Consensus 501 ~~~~~~~~~~f~~~~~~~~v~~i~~~~ 527 (556)
++.|.+.++..+++++.++.
T Consensus 168 -------~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 168 -------AMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 45677666555555554443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=79.50 Aligned_cols=140 Identities=10% Similarity=0.059 Sum_probs=90.2
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 92 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (556)
....|.+..+|. +...+++...+.++..++.+++++++|| +|+|+++..+..+..+...+..+. ++
T Consensus 250 ~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~-------~~----- 315 (460)
T PRK11462 250 AMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFV-------PM----- 315 (460)
T ss_pred HhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHh-------ch-----
Confidence 334444544553 3445677778888999999999999999 899988765555444333332221 00
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhh-hhhHHHHHHHHHHHHHHHHHHHH
Q 008719 93 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LDRFFNFFYLSVTVGAIVAFTLV 171 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~lG~~~g~~i~ 171 (556)
.+...+++..++.|++.+...+...++.+|..+.++.+.... -+..++.......+|..+|+.++
T Consensus 316 --------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~ 381 (460)
T PRK11462 316 --------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI 381 (460)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334445566788888877777889999877543221111 23445666778899999999998
Q ss_pred HHhhcccch
Q 008719 172 VYIQMEHGW 180 (556)
Q Consensus 172 ~~l~~~~gw 180 (556)
|++....|+
T Consensus 382 g~iL~~~Gy 390 (460)
T PRK11462 382 GWMLAYGGY 390 (460)
T ss_pred HHHHHHcCC
Confidence 887654444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00059 Score=72.97 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=87.1
Q ss_pred cccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCC
Q 008719 341 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 420 (556)
Q Consensus 341 ~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (556)
.+.........+....+..+.|+++-| +.+..+++..++..++.++..
T Consensus 66 ~I~s~F~ysYal~qIp~GlLaDrlG~K-----------~vL~l~~l~Wsl~t~L~~fa~--------------------- 113 (511)
T TIGR00806 66 EIIPVLPYSHLAVLVPVFLLTDYLRYK-----------PVLVLQALSFVCVWLLLLLGT--------------------- 113 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 334444555666666777777776655 447777777777766666653
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 008719 421 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 483 (556)
Q Consensus 421 ~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i 483 (556)
+.+.+.+.-++.|++|+... +.+.++++.+|++.|++++|+++....+|.++++.+.+.+
T Consensus 114 --Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 114 --SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred --HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999998 9999999999999999999999999999999999999984
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.7e-05 Score=81.53 Aligned_cols=136 Identities=10% Similarity=-0.151 Sum_probs=108.6
Q ss_pred HHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccc
Q 008719 19 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 98 (556)
Q Consensus 19 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (556)
++.+|+++.+.|.+.....++..++..+.+++.+| ++.|+++.++.++.+++.........-.+... ++
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~------gi---- 348 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF------GI---- 348 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeecccccc------CC----
Confidence 35799999999999999999999999999999999 89999999999988877655432110000000 00
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008719 99 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 178 (556)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~ 178 (556)
.+.+.+...-++.+++.+........++.+..|++. +++.+++.....++|..+++.+++++.++.
T Consensus 349 --------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 349 --------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred --------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 112345556678888888888899999999999988 899999999999999999999999998876
Q ss_pred c
Q 008719 179 G 179 (556)
Q Consensus 179 g 179 (556)
|
T Consensus 415 g 415 (468)
T TIGR00788 415 G 415 (468)
T ss_pred C
Confidence 6
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=78.07 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=107.7
Q ss_pred CCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCccccccC
Q 008719 339 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAIS-HGYEFSFLT 417 (556)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 417 (556)
.+.+....++..++..|+.+.+.||-..|+++| +..+..|.+...+++.++.+.........+. ++ .
T Consensus 41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR------rp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~------~ 108 (477)
T TIGR01301 41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR------RPFIAAGAALVAFAVILIGFAADIGHLFGDNLDK------K 108 (477)
T ss_pred HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh------HHHHHHHHHHHHHHHHHHHhCchhhhhccccccc------c
Confidence 345566678888999999999999643333211 1224445666666766666543210000000 00 0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhH--HHHHHHHHHHHhHHHHHHHHHHHHhh--hccCCCCCC
Q 008719 418 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK--SIGSAYAALAGGLGCFAASILNSIIK--SVTGNPKKG 493 (556)
Q Consensus 418 ~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~r--g~~~gl~~~~~~ig~~lg~~l~~~i~--~~~~~~~~~ 493 (556)
... ...+..++.+.+.-++.....++.-+++.|.+|++.| +.+.++.+....+|+.+|..+.++.. ...+-...+
T Consensus 109 ~~~-~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~ 187 (477)
T TIGR01301 109 TKP-RAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTE 187 (477)
T ss_pred chh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccc
Confidence 001 2234445556666778888888999999999999876 57899999999999999998877642 111100000
Q ss_pred CCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 494 QPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 494 ~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
..+.+ ..++...|++.+++.+++.+...+..+|++.
T Consensus 188 ~~~~~-----~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 188 ACGVS-----CANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred ccccc-----cchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 01111 1245677888888888877777777777553
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0004 Score=72.44 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=127.0
Q ss_pred HHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccc
Q 008719 17 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 96 (556)
Q Consensus 17 yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (556)
|=-+.+|++..|...+......+..++-.+.|++..|..++|++..++..+..+++.+..+++..
T Consensus 234 ygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~--------------- 298 (403)
T PF03209_consen 234 YGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL--------------- 298 (403)
T ss_pred chhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 33357999999999999999999999999999999865788999889999998888888777431
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008719 97 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 176 (556)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~ 176 (556)
.+.+.+..+.++.|+|.|.+.....+..-|..++++ .+..++.+.....++..+|..++|.+.+
T Consensus 299 ----------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 299 ----------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred ----------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999998877 7899999999999999999988887754
Q ss_pred ----------ccchhHHHHHHHHHHHHHHHHH
Q 008719 177 ----------EHGWGSAFGALAIAMGISNMLF 198 (556)
Q Consensus 177 ----------~~gw~~~f~i~~~~~~~~~~~~ 198 (556)
..+|..+|.+-++..+.++.+.
T Consensus 363 ~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 363 LVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 2357888888877766665554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=82.75 Aligned_cols=137 Identities=14% Similarity=0.040 Sum_probs=94.5
Q ss_pred CCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc----------
Q 008719 339 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAIS---------- 408 (556)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~---------- 408 (556)
.+++.....+...+..+++.++.++..|| +.+++|.++++++.++.+...-...++...
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----------~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGTKLHRP-----------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhcccCcc-----------eEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 45566677777777777777777776555 347788888888877765542111000000
Q ss_pred ----cCccccc-c------------CcCC-cchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHh
Q 008719 409 ----HGYEFSF-L------------TAMP-DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGG 470 (556)
Q Consensus 409 ----~~~~~~~-~------------~~~~-~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ 470 (556)
+-+..+. . .... ...+..+++.-++.|+|++...+...+++.+.+|++.|+.+.|+.+....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 0000000 0 0000 01355667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 008719 471 LGCFAASILNSIIKSV 486 (556)
Q Consensus 471 ig~~lg~~l~~~i~~~ 486 (556)
+|..+|+.+.+.+...
T Consensus 219 iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQI 234 (633)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 9999999999887654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.02 Score=61.19 Aligned_cols=174 Identities=9% Similarity=-0.150 Sum_probs=90.6
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
.-...++||.+.+.-+---.+..-..-.+...+..+..|...|| .-|.+++..+.+..-++..+.+.....- +..
T Consensus 21 w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l-~~~--- 95 (432)
T PF06963_consen 21 WEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSVAASCALFLLL-LSY--- 95 (432)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHHHHHHHHHHHH-HhC---
Confidence 33445677766544444334444444566777888888999999 7999998888877655544444321110 000
Q ss_pred CccccccccCCCCCc--cchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPA--KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
..... ......++.+..++.++..=.......+.=-|+...=..++...+.+..+...-.=-+--++|
T Consensus 96 ----------~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~cklla 165 (432)
T PF06963_consen 96 ----------PSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLA 165 (432)
T ss_pred ----------CccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 00000 011222232222322222222222223333344221100111114444444333334566889
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 008719 168 FTLVVYIQMEHGWGSAFGALAIAMGISNMLF 198 (556)
Q Consensus 168 ~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~ 198 (556)
|++.|.+....+......+.++.-+++...=
T Consensus 166 Pl~vG~l~t~~s~~~~~~~i~~~N~~S~~vE 196 (432)
T PF06963_consen 166 PLFVGLLMTFASPVIAAIFIAGWNLASVFVE 196 (432)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888877777776666665543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00056 Score=75.59 Aligned_cols=139 Identities=12% Similarity=0.198 Sum_probs=99.4
Q ss_pred CCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCc
Q 008719 339 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418 (556)
Q Consensus 339 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (556)
..|+...+.+...+..|+++++.|.++||+. +..|.++..+|+++.+..+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-----------~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-----------FIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcchHH-----------HHHHHHHHHhHHHHhhcCC-------------------
Confidence 4567777888888999999999999999853 7788888888888776543
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 008719 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL 498 (556)
Q Consensus 419 ~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~ 498 (556)
+...++-..++.|+|.+.... ....+.|..|.+.|+.+.++.....-.....++.+...+.. +.+|
T Consensus 130 ----~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~--------~~~W- 195 (599)
T PF06609_consen 130 ----NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA--------HSGW- 195 (599)
T ss_pred ----cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc--------CCCc-
Confidence 455677788888988776654 45568899999999988877665444444455555544322 2456
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 499 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 530 (556)
Q Consensus 499 ~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~ 530 (556)
.|.|++.+.+..++++..+++++
T Consensus 196 ---------Rw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 196 ---------RWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHhC
Confidence 56677777777777766555544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00043 Score=76.71 Aligned_cols=130 Identities=14% Similarity=0.068 Sum_probs=91.2
Q ss_pred HHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHH
Q 008719 354 LSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCL 433 (556)
Q Consensus 354 ~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l 433 (556)
.+..+.+.|++++| ..+.+|.++.+++.++.+..... ... .+.+.+.+..++
T Consensus 78 ~lp~G~L~Dr~G~R-----------~vllig~ll~~iG~ll~ala~~~----------------~i~-~s~~~l~l~r~l 129 (591)
T PTZ00207 78 LLPYSFIYDYLGPR-----------PIFVLSMTVFCLGTLLFALTFQE----------------VIE-GSVVRLSVYNGL 129 (591)
T ss_pred HHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHhcc----------------ccc-CcHHHHHHHHHH
Confidence 33456777776666 45788888888888877765210 000 267778888899
Q ss_pred HHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHH
Q 008719 434 IGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWL 513 (556)
Q Consensus 434 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~ 513 (556)
.|+|++...+.......+..| +.||.++|+......+|+.+.+.+...+.. .+| ..+|++
T Consensus 130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~---------~~~----------~~~fl~ 189 (591)
T PTZ00207 130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS---------DNT----------SAYFFF 189 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhH----------HHHHHH
Confidence 999999998888888888887 789999999999999999765444443322 112 356777
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 008719 514 LAVLSVINFCAFLYSAYR 531 (556)
Q Consensus 514 ~~~~~~v~~i~~~~~~~~ 531 (556)
++++.++..+..+.+.+.
T Consensus 190 l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 190 LMSFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHHHHHhheeC
Confidence 777777766666555543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.8e-05 Score=59.12 Aligned_cols=61 Identities=20% Similarity=0.040 Sum_probs=52.1
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHH
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 68 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~ 68 (556)
+...+.++++.|++ +.|+|+.|+|.+.++..+...++++++|+++|| +||+|.++....+.
T Consensus 15 ~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 15 ALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence 34456778888887 599999999999999999999999999999999 79888877765543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.11 Score=56.22 Aligned_cols=150 Identities=9% Similarity=0.016 Sum_probs=89.0
Q ss_pred HHHhhCC-----ChhhHhHHHHHHHHHHHHH-hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhc--cccCCCCC
Q 008719 18 MFYVMHK-----SFADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM--KVFMPNQD 89 (556)
Q Consensus 18 l~~~lg~-----s~~~~~~~~~~~~~~~~~~-~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~ 89 (556)
+++.+.. +.....++.+...+...+. .++-+++++| ++|++.+.+....+..-+.++++...+ ..++|+ +
T Consensus 29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~-~ 106 (472)
T TIGR00769 29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPT-A 106 (472)
T ss_pred hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCc-H
Confidence 3455655 3356777777766665555 8889999999 899999988887777776666654221 111111 1
Q ss_pred Ccccccc-ccCCCCCcc-chhHHHHHHHHHHHHHhccCccc-chhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQ-LLGSCEPAK-SWQMLYLYTVLYITGFGAAGIRP-CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 90 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
++|+... +..+.+..- -.+.|...+.-+...+-...... .-.++..|.++.++ -.|.+++++...|+|..+
T Consensus 107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q------akRfy~l~~~ganlg~i~ 180 (472)
T TIGR00769 107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE------AKRFYALFGLGANVALIF 180 (472)
T ss_pred HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHH
Confidence 1111000 000000000 00011111222222222233333 45689999999888 899999999999999999
Q ss_pred HHHHHHHhh
Q 008719 167 AFTLVVYIQ 175 (556)
Q Consensus 167 g~~i~~~l~ 175 (556)
++.+..++.
T Consensus 181 sg~~~~~~~ 189 (472)
T TIGR00769 181 SGRTIKYFS 189 (472)
T ss_pred HHHHHHHHH
Confidence 999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.03 Score=59.07 Aligned_cols=133 Identities=8% Similarity=0.032 Sum_probs=83.4
Q ss_pred HhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccchh
Q 008719 29 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 108 (556)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (556)
.+.++.+-.+...+.-+++-++.+| ..-+.=+.++.++..+|.++.+++ .+
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~g~l~va~~----------------------------~~ 111 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHR-VPYWIRILICVALSAAGMLLVAFS----------------------------PS 111 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHHHHhheeec----------------------------cc
Confidence 3456777777788888888999998 543322344556777788877775 45
Q ss_pred HHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHH
Q 008719 109 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGA 186 (556)
Q Consensus 109 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~g--w~~~f~i 186 (556)
.+.-+++.++.+++.|.-.....++.+ .+++. ..+-+..+...++++|...=-.+.. .+ -|..+++
T Consensus 112 v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~ 179 (402)
T PF02487_consen 112 VWVRLLGVVLASLSSGLGEVTFLSLTH-FYGKS----------SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLI 179 (402)
T ss_pred hhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCcc----------ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHH
Confidence 667778889999999988888888755 44422 2344444555566666654444444 44 4666666
Q ss_pred HHHHHHHHHHHHHHhc
Q 008719 187 LAIAMGISNMLFFIGT 202 (556)
Q Consensus 187 ~~~~~~~~~~~~~~~~ 202 (556)
..++-++-.+.+++..
T Consensus 180 ~~~lp~~~~~~~f~~L 195 (402)
T PF02487_consen 180 MLVLPAIFLLSYFFLL 195 (402)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6555433333334333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.8e-05 Score=78.73 Aligned_cols=159 Identities=9% Similarity=-0.049 Sum_probs=125.8
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 90 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 90 (556)
.+++--+++ +++-.+.--|.+...-..+-++.-++.++|..| +|+-+++.+++...++=++..+..
T Consensus 391 ~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L------------ 456 (618)
T KOG3762|consen 391 FTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYL------------ 456 (618)
T ss_pred HHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHh------------
Confidence 334434443 455444444433333445666777888999999 899999999999998888888876
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH-HHHHHHHHH
Q 008719 91 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFT 169 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~lG~~~g~~ 169 (556)
+|.|+.....+++|+..+.++.++.+++....|++- |.++-++..... .+|-.+|.+
T Consensus 457 ----------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~Gsl 514 (618)
T KOG3762|consen 457 ----------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSL 514 (618)
T ss_pred ----------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhh
Confidence 788999999999999999999999999999999988 888888766654 888899999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccc
Q 008719 170 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 205 (556)
Q Consensus 170 i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 205 (556)
|+|.+.+.+|-+..|.+.++..++.++.+....+..
T Consensus 515 IGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 515 IGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred hhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999988888777766666555443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00048 Score=74.88 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCC
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 502 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~ 502 (556)
+.+.++...++.|+.|+...|....++.....++.||.-+|+++....+|+++|+++...+....| ..+..+|
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~--~~~~~gW----- 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG--SGGLAGW----- 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC--CCCcCCc-----
Confidence 567778889999999999999999999999999999999999999999999999999887654444 3344556
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 503 NTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 503 ~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
.|.|++-++++++..+..+++.+..+.
T Consensus 206 -----~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 206 -----RWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred -----eeehhHHHHHHHHHHheEEEEecCChh
Confidence 578999999999988887777765443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00049 Score=71.35 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=107.6
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
+..+++.|+.+..|.+..+++..++.+..+..++..++-++-.| +-..|.+........+-++..++.
T Consensus 255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~----------- 322 (422)
T COG0738 255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALI----------- 322 (422)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 45678899988899999999999999999999999999999998 788888777665554444444443
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
.+ ..-..+.++.|+..+.+.|++.+...+..+++.+ ++... -.+.-+|+++.|.
T Consensus 323 -----------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~~---l~maivGGAiiP~ 376 (422)
T COG0738 323 -----------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSGL---LVMAIVGGAIIPP 376 (422)
T ss_pred -----------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----cccee---eeeheecchHHHH
Confidence 22 3344566789999999999999999999994432 33332 2345688999999
Q ss_pred HHHHhhcccchhHHHH
Q 008719 170 LVVYIQMEHGWGSAFG 185 (556)
Q Consensus 170 i~~~l~~~~gw~~~f~ 185 (556)
+-|++.++.|-...+.
T Consensus 377 l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 377 LQGVIADMFGIQLTFL 392 (422)
T ss_pred HHHHHHHhhhhHHHHH
Confidence 9999999998777766
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0002 Score=73.50 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=84.4
Q ss_pred CcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcC
Q 008719 340 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 419 (556)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (556)
+.+.....+.-++..|..+.+.|+.+||. .+.++.+..+++..+.+...
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkp-----------vll~c~~~va~s~ll~~~S~-------------------- 119 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKP-----------VLLACLIGVALSYLLWALSR-------------------- 119 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchH-----------HHHHHHHHHHHHHHHHHHHH--------------------
Confidence 44455556677888889999999888883 36666666666555544432
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 420 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 420 ~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
++..++..-++.|+..+...+ .-+++.|.++++.|+.+++......++|-++||++.+.+..
T Consensus 120 ---~F~afv~aR~l~Gi~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 ---NFAAFVLARFLGGIFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ---HHHHHHHHHHhhhhccCchHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 454556668888888875544 45889999999999999999999999999999999998765
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.001 Score=73.26 Aligned_cols=141 Identities=14% Similarity=0.047 Sum_probs=106.8
Q ss_pred CcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcC
Q 008719 340 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 419 (556)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (556)
+++.....+...+..++.+++.|+++||. .+..+.++..++.++.....
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a~-------------------- 140 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALAP-------------------- 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHhh--------------------
Confidence 57777888888999999999999988884 36677777777777766653
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCccc
Q 008719 420 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA 499 (556)
Q Consensus 420 ~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~ 499 (556)
+..+++.+-++.|+|.++.......+..|.+|++.||...+..+....+|-.++ .+.+..... . ..+|
T Consensus 141 ---~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~-----~-~~~W-- 208 (513)
T KOG0254|consen 141 ---SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSK-----V-YAGW-- 208 (513)
T ss_pred ---hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhcc-----C-CccH--
Confidence 678899999999999999999999999999999999999999998888777777 444443221 0 0245
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008719 500 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 532 (556)
Q Consensus 500 ~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~ 532 (556)
...+++..+.+++..+. .++.+|+
T Consensus 209 --------r~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 209 --------RIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred --------HHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 45566666666666665 5555543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.26 E-value=3.7e-06 Score=90.41 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=101.0
Q ss_pred hHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc
Q 008719 13 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 92 (556)
Q Consensus 13 ~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (556)
....++.+..|.+.. -.......+...++.+++.++.|| +|||+.++.+..+.++....++.... ..++
T Consensus 274 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~~~---~~~~----- 342 (451)
T PF00083_consen 274 YYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGIIFF---LGVS----- 342 (451)
T ss_pred ccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccccccccccc---cccc-----
Confidence 333444456676665 222233445566777788899999 89999999998888777666651100 0000
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008719 93 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 172 (556)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~ 172 (556)
.+...+...+....+.......+..+....+.+|.+|.+. |.++.++.+....++.++++.+..
T Consensus 343 ----------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~~~i~~~i~~~~~~ 406 (451)
T PF00083_consen 343 ----------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYAVGRIGGFIIPFLFP 406 (451)
T ss_pred ----------cccccccccceeeeeccccccccccccccccccccccccc------cccccccccccccccccccccccc
Confidence 0000122222222222222222445677788999999998 999999999999999999998888
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 173 YIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 173 ~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
.+.+..+-...+++.++..++..+..++..|+
T Consensus 407 ~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 407 YLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred cccccccccccchhhHHHHHHHHhheeEEEee
Confidence 87776663445555555544455444444444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0019 Score=67.99 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=105.1
Q ss_pred HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhc---ccchhHHHHHH-HHHHHHHHHHHHHhhhccccC-C
Q 008719 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA---YLGRYWTIAIF-TTIYLAGLTGITLCATMKVFM-P 86 (556)
Q Consensus 12 ~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~---~~Grr~~~~~~-~~~~~i~~~l~~~~~~~~~~~-~ 86 (556)
..+++|++ .+|.+..-.+.+-....+...+.+|+.|..+|| .+||||-++.+ ....+++.++...++.+.... .
T Consensus 53 sy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 53 SYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred ccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 44667876 689999888988889999999999999999998 37888765554 445667777777775542211 1
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
+++. +.+......++++..+.=+..=......-++++|...++++ +.++.+++...+.+|..+
T Consensus 132 ~~~~------------~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~~Ans~f~~f~avGnvL 194 (498)
T KOG0637|consen 132 NERK------------PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----KTRANSVFSFFMAVGNVL 194 (498)
T ss_pred Cccc------------ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----hhccchhHHHHHHhccee
Confidence 1111 12334556677777777777777788888999999877662 222899999999999999
Q ss_pred HHHHHHH
Q 008719 167 AFTLVVY 173 (556)
Q Consensus 167 g~~i~~~ 173 (556)
|...+++
T Consensus 195 GY~~g~y 201 (498)
T KOG0637|consen 195 GYALGSY 201 (498)
T ss_pred eeecccc
Confidence 9988774
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0024 Score=70.20 Aligned_cols=133 Identities=12% Similarity=0.107 Sum_probs=99.1
Q ss_pred cccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcc
Q 008719 343 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 422 (556)
Q Consensus 343 ~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (556)
+.+..++.++...+.+.+.|+++||. .+..+.++..++-+..++. .
T Consensus 124 ~s~~~~G~~vG~~i~g~lsD~~GRk~-----------~~~~~~~~~~i~~~~~a~a-----------------------~ 169 (521)
T KOG0255|consen 124 QSLFFLGVLVGSLIFGPLSDRFGRKP-----------VLLVSLLLFIIFGILTAFA-----------------------P 169 (521)
T ss_pred HHHHHHHHHHHHhhheehHhhcccHH-----------HHHHHHHHHHHHHHHHHHh-----------------------C
Confidence 44455566666666677778877773 3666666666555444443 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCC
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 502 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~ 502 (556)
+++...+.-++.|++.+......+.+..|..+++.|+.++.+ ......++.+++.....+.. +|
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----------~W----- 233 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----------DW----- 233 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----------hH-----
Confidence 788888899999999999999999999999999999999999 77788888888888887653 35
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008719 503 NTGRFDYLYWLLAVLSVINFCAFLYSAYR 531 (556)
Q Consensus 503 ~~~~~~~~f~~~~~~~~v~~i~~~~~~~~ 531 (556)
.+.+|+....+++.++. +++.+|
T Consensus 234 -----r~~~~~~~~~~~~~~~~-~~l~~E 256 (521)
T KOG0255|consen 234 -----RWLFWIISIPSGLFLLL-WFLPPE 256 (521)
T ss_pred -----HHHHHHHHHHHHHHHHH-HHccCc
Confidence 57788888887776555 334333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0046 Score=56.58 Aligned_cols=106 Identities=16% Similarity=0.229 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccchhHH
Q 008719 31 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 110 (556)
Q Consensus 31 ~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (556)
.-.++......+.+++++.+.++ +|.|+.++++.+.+.+-.+.... .+.+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~~ 90 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY-----------------------------PNSY 90 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh-----------------------------hhHH
Confidence 44555667778888889999999 89999999998887744333222 3567
Q ss_pred HHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008719 111 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 172 (556)
Q Consensus 111 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~ 172 (556)
.++.+-++.|+|.+...++...++.+..++++ |++-.+++-.....+.++|.++.-
T Consensus 91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 91 TLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998877666 788888877777777777765443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.001 Score=69.94 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=109.0
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhH--------HHHHHHHH-HHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNFLGI-SQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 75 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~--------~~~~~~~~-~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~ 75 (556)
+++|+..-+...-++ .+|+.+.+... ........ ...+-.++..+.|+ +|||+..+.++.++++..+.+
T Consensus 318 iafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq~~GF~~~~i~~~~~ 395 (538)
T KOG0252|consen 318 IAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQLMGFFIMTIFFFVI 395 (538)
T ss_pred hhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHHHhhHHHHHHHHHHH
Confidence 466666666655554 45655543333 11111112 22255566778999 899999999999998887777
Q ss_pred HHhhhccccCCCCCCccccccccCCCCCccchhH-HHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHH
Q 008719 76 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 154 (556)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 154 (556)
+.. || -.. ..... ...-+..+ ++.-+--.+....-+|.+|.+. |+...+
T Consensus 396 ~~~------------y~--------~~~-~~~Gf~v~y~l~~f---f~NFGPn~ttfivpaE~FParv------R~t~hG 445 (538)
T KOG0252|consen 396 AGP------------YN--------QLE-NTIGFVVLYSLTFF---FGNFGPNATTFIVPAEIFPARV------RSTCHG 445 (538)
T ss_pred cCC------------cc--------ccc-ccCceeehHHHHHH---HHhcCCCceeEEeehhhchHHH------hhhhhh
Confidence 763 11 000 00111 12222222 3444445556677789999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-----ccchhHHHHHHHHHHHHHHHHHHH
Q 008719 155 FFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 155 ~~~~~~~lG~~~g~~i~~~l~~-----~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
+...+.-.|+++|.....++++ ..+.+.+|++.+...++.++..++
T Consensus 446 IsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 446 ISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred HHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 9999999999999999999988 678899999998887777665444
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0065 Score=49.33 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=58.5
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 78 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~ 78 (556)
+.+.|+++.++|.++++|+.+...+++.++.+...++.++ ..+++.+..++++..+..+.+++.
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778999999999999999999999999999999998 788999999999999999988886
|
Note that many members are hypothetical proteins. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0088 Score=64.32 Aligned_cols=161 Identities=12% Similarity=0.089 Sum_probs=99.2
Q ss_pred CcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcC
Q 008719 340 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 419 (556)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (556)
+++.....++..+..|..+.+..+..+ .+ +-+..|.+++.++-++....+..
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~--~k--------~Pli~s~ii~~~g~llY~~l~~~------------------ 125 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGS--VK--------KPLIVSFLIAIIGNLLYLALAYV------------------ 125 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCC--cc--------cCHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 334445667777777777765444321 11 22788999999998888666532
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCccc
Q 008719 420 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA 499 (556)
Q Consensus 420 ~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~ 499 (556)
+.-..+.+.++.++.|+|.+-. ...=.|++...-.+.|.++++..+..+.+|.++||.+-..+... + +....|.+
T Consensus 126 ~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L-g---~~G~~i~~ 200 (488)
T KOG2325|consen 126 PNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL-G---EKGFMILP 200 (488)
T ss_pred ccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh-c---CCceEEcC
Confidence 2115677889999999997743 34445666655567777777777766667777777665555432 1 11122333
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 500 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 500 ~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
. +.-+.|..-=|+.+.++++.+++..++.+|..+
T Consensus 201 ~-~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 201 G-LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred c-ceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 2 222223334577888888887777777776443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.3 Score=55.32 Aligned_cols=326 Identities=11% Similarity=-0.033 Sum_probs=189.7
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 93 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 93 (556)
...+...-.+...........++.....+..++....+|-.-|+-..+..-.....++.++..+.+. ... +
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a~-~------- 77 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GAI-P------- 77 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccC-c-------
Confidence 3444444455555667788889999999999999999999666777777777777777777766543 110 0
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 94 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
...+.....+..+.+.++.++..++-+.+.+++.+..++ ..+.+..+++++..+.+.+. .+++..
T Consensus 78 -----------~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiG-Slis~~ 142 (654)
T TIGR00926 78 -----------SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAG-SLISTI 142 (654)
T ss_pred -----------ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 113344556778889999999999999999999976542 44557999999999888774 556666
Q ss_pred hhcccc-hhH------HH-HHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccC
Q 008719 174 IQMEHG-WGS------AF-GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVP 245 (556)
Q Consensus 174 l~~~~g-w~~------~f-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (556)
+..... +.. .+ +..++.+++.++.+.......+..++.+.+...+.+++......++
T Consensus 143 i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~--------------- 207 (654)
T TIGR00926 143 ITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR--------------- 207 (654)
T ss_pred HHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH---------------
Confidence 655433 221 12 2344444444445555444333333322211111122111110000
Q ss_pred CCCccccCCCccccCCchhHhHHHHhhhccCCCC-CCCCccc--chhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHH
Q 008719 246 GKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN-PSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 322 (556)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (556)
......... ...|... .+...++.+...+.+.++.....+++.+.++.....
T Consensus 208 -------------------------~~~~~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s 262 (654)
T TIGR00926 208 -------------------------KRFSTRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGS 262 (654)
T ss_pred -------------------------HhhccCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 000000000 0111111 112223456677777888888888888888766677
Q ss_pred HHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008719 323 QQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYR 402 (556)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~ 402 (556)
.+..+.++..+.+...+.....++.+-.++..++...+..++.++. +| ...+...+.-+.+.+.++++.+.......
T Consensus 263 ~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l-~~--~~~~ls~l~k~~iG~~la~la~~va~~ve 339 (654)
T TIGR00926 263 RWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAI-AK--CGTRFTSLRKMAVGGLLAALSFFVAALVQ 339 (654)
T ss_pred HHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHH-Hh--cCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666654333222233445555556666666665555666664 21 11345567788888888888877777655
Q ss_pred hhhh
Q 008719 403 RNYA 406 (556)
Q Consensus 403 ~~~~ 406 (556)
...-
T Consensus 340 ~~~~ 343 (654)
T TIGR00926 340 LKVN 343 (654)
T ss_pred HHHh
Confidence 5544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.17 Score=55.72 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=92.3
Q ss_pred HHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHH---HHHHHHhhhccccCCCCCC
Q 008719 14 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG---LTGITLCATMKVFMPNQDN 90 (556)
Q Consensus 14 ~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~---~~l~~~~~~~~~~~~~~~~ 90 (556)
..-.+...+|-+..+.+.++++|.++..++..++|+++++ .-|+.. .+-+.+..++ ..++...... .
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~--~------ 106 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFV-AVELLLALLGGLSALILYAAFAF--Q------ 106 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--H------
Confidence 3344556788899999999999999999999999998865 333322 2111111111 1111111000 0
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008719 91 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 170 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i 170 (556)
......++...++.++..|+..|....+..+... ++ -++..+..|....+|+++|.++
T Consensus 107 ---------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l~ 164 (521)
T PRK03612 107 ---------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGLA 164 (521)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHHH
Confidence 0111223444556778888888887776654322 12 3556777888899999999998
Q ss_pred HHHhhc-ccc-hhHHHHHHHHHHHHHHHHHHH
Q 008719 171 VVYIQM-EHG-WGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 171 ~~~l~~-~~g-w~~~f~i~~~~~~~~~~~~~~ 200 (556)
.+++.. ..| .+..+++.++..+++++.++.
T Consensus 165 ~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 165 FPFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 887654 566 455555555444445444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.067 Score=60.19 Aligned_cols=111 Identities=7% Similarity=-0.013 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCC
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 502 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~ 502 (556)
.+..++.+.++.|+|+....+...+|+.+.+.++.-+.+.|+.++.+-+|.++|-++.+.+.....|+.....+--+.|=
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP 315 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP 315 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence 44467788899999999999999999999999999999999999999999999999988887655433101000001110
Q ss_pred ccchhHH-HHHHHHHHHHHHHHHHHHHhhccc
Q 008719 503 NTGRFDY-LYWLLAVLSVINFCAFLYSAYRYK 533 (556)
Q Consensus 503 ~~~~~~~-~f~~~~~~~~v~~i~~~~~~~~~~ 533 (556)
..-.-.| =|.+.+.+.++..+.++++-++.+
T Consensus 316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 316 RWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 0001123 356677777777776666644433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.041 Score=59.52 Aligned_cols=125 Identities=12% Similarity=0.046 Sum_probs=107.0
Q ss_pred HHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHH-HhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccc
Q 008719 16 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGG-FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 94 (556)
Q Consensus 16 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G-~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 94 (556)
.|+...++++..+.+...+...+...++.++.. .+.-. +|-|+++.+|+....+.....+++
T Consensus 266 ~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~---------------- 328 (463)
T KOG2816|consen 266 LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFA---------------- 328 (463)
T ss_pred EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHh----------------
Confidence 466678999999999999999999999999998 56666 899999999999999999999997
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 95 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 174 (556)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l 174 (556)
++.|+++...++. ...+...|...++.+.+.++++ +++.+++.+..-.+..+++|.+-+.+
T Consensus 329 ------------~~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 329 ------------TETWMMFAAGVVV-ALAGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred ------------ccchhhhHHHHHH-HhhcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 6667777776654 4456777999999999999988 99999999999999999999887766
Q ss_pred hc
Q 008719 175 QM 176 (556)
Q Consensus 175 ~~ 176 (556)
..
T Consensus 390 ~~ 391 (463)
T KOG2816|consen 390 FA 391 (463)
T ss_pred HH
Confidence 43
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0016 Score=71.92 Aligned_cols=102 Identities=13% Similarity=0.175 Sum_probs=3.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCC----------
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK---------- 492 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~---------- 492 (556)
.++.++++.++.|+|..-..+...+|+.|.++++.-+.+.|+......+|..+|-.+.+.+.....|+..
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p 219 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP 219 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC
Confidence 4566778899999999999999999999999999999999999999999999998888766553322111
Q ss_pred CCCCcccCCCccchhHH-HHHHHHHHHHHHHHHHHHHhhc
Q 008719 493 GQPNWLAQNINTGRFDY-LYWLLAVLSVINFCAFLYSAYR 531 (556)
Q Consensus 493 ~~~~w~~~~~~~~~~~~-~f~~~~~~~~v~~i~~~~~~~~ 531 (556)
+...|+-+ .| =|.+.+.+.++..+.++.+-++
T Consensus 220 ~dp~WvGA-------WWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 220 SDPRWVGA-------WWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp ----------------------------------------
T ss_pred CCccHHHH-------HHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 11223211 13 3555667776666666655443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.15 Score=50.36 Aligned_cols=91 Identities=13% Similarity=0.041 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCch
Q 008719 377 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 456 (556)
Q Consensus 377 ~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~ 456 (556)
++..+.+|.+...++..++......+ .++.+.|.+.+...+.+.+....+.....-..+..|.
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~~~~----------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~- 127 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAVSGR----------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR- 127 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc----------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-
Confidence 44456778777777776665543211 0113566676667777788777777777777788985
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 008719 457 MKSIGSAYAALAGGLGCFAASILNSIIK 484 (556)
Q Consensus 457 ~rg~~~gl~~~~~~ig~~lg~~l~~~i~ 484 (556)
.||++.|+.....++++.+-+.+...+.
T Consensus 128 ~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 128 SRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 7999999999999998877776666543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=4.4 Score=42.37 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 008719 427 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV 486 (556)
Q Consensus 427 lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~ 486 (556)
++..+.+.+...-..+....++-++.+|+.+-|++|.+.|....+|+.-=..+...+.+.
T Consensus 372 ~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ 431 (510)
T KOG3574|consen 372 LITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADG 431 (510)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhccc
Confidence 344577777777777888889999999999999999999999999877766676666553
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.14 Score=53.71 Aligned_cols=123 Identities=14% Similarity=0.118 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCch---
Q 008719 380 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA--- 456 (556)
Q Consensus 380 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~--- 456 (556)
.+..|.++..+|.+++...... ... . ++.+...+.+++.++++|.++.=|....+..++.+++
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~-----~~~--------~-~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIP-----PSL--------P-SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTS-----SSC---------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred hhhHHHHHHHHHHHHhHHHHhc-----chh--------h-hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 4677888888888876555321 000 0 1134567888899999999999999999999998876
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 457 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 457 ~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
.|..+..++....++|..++..+.+++.+.. +| ...|++.++..+++++.++.-.++++.
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~--------~~----------~~~f~i~~~~~~~~~~~f~~~~~~y~~ 128 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNY--------GW----------FLGFGIPAIGMLLALIVFLSGRKRYRK 128 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS---------H----------HHHHHHHHHHHHHHHHHHHCCCCTT--
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhcccc--------ch----------hhhhhHHHHHHHHHHHHHHhCCcCCcC
Confidence 4666777788888999999988888876532 23 456777777777776655444444443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.12 Score=54.81 Aligned_cols=168 Identities=15% Similarity=0.078 Sum_probs=94.7
Q ss_pred hhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 008719 8 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 87 (556)
Q Consensus 8 ~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 87 (556)
|++.+.+..-+. .-|.+...+|++......++.++.+++|.++||...-|++.++......++. ++....+ .++
T Consensus 283 ~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~-~~l~~~t---~~~- 356 (480)
T KOG2563|consen 283 NSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT-LMLLTCT---LFL- 356 (480)
T ss_pred HHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHhh---ccC-
Confidence 334444433332 3466767899999999999999999999999994344556666555555553 2222111 111
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
...+..+..-.+.|+..-+..|...-+..|..-|..++ ...+.......+=.++=
T Consensus 357 -------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~------tSsGll~~~gq~f~~~~ 411 (480)
T KOG2563|consen 357 -------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEG------TSSGLLNLSGQIFGVIL 411 (480)
T ss_pred -------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCc------ccceeEEeehhHHHHHH
Confidence 13345566667788888999999999999886444322 22222222222222222
Q ss_pred HHHHHHhhcccc---hhH-HHHHHHHHHHHHHHHHHHhccccc
Q 008719 168 FTLVVYIQMEHG---WGS-AFGALAIAMGISNMLFFIGTPLYR 206 (556)
Q Consensus 168 ~~i~~~l~~~~g---w~~-~f~i~~~~~~~~~~~~~~~~~~~~ 206 (556)
.++-+...+..+ |.. .-+.......+..++..+.+++++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 412 VFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred HHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 233455555544 333 233344444555555555555543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.59 E-value=6.6 Score=42.90 Aligned_cols=130 Identities=14% Similarity=0.179 Sum_probs=72.8
Q ss_pred HHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhc--cccCCCCCCcccccccc-CCCCCcc-chhHHHHHH
Q 008719 39 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLL-GSCEPAK-SWQMLYLYT 114 (556)
Q Consensus 39 ~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 114 (556)
...+...+-.+++|+ ++|.+++.+....+...+.+.++...+ ..++|+ ..+++..... ++.+..- -.+.|.+.+
T Consensus 71 ~a~~f~~~y~kl~n~-~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~-~~~~~~~~~~~~~~~~~i~~~~~Wt~sl 148 (491)
T PF03219_consen 71 VAILFTILYSKLSNR-LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPD-AFADKLLAILPPGFKGFIAMFRNWTFSL 148 (491)
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCC-HHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 344556778999999 899999998888877777777664221 011121 1111110000 0000000 000011111
Q ss_pred HHHHHHHhccCccc-chhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008719 115 VLYITGFGAAGIRP-CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 176 (556)
Q Consensus 115 ~~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~ 176 (556)
.-+..-+=...... .-..+..|.++.+| -.|.+.++....|+|.+++..+..++.+
T Consensus 149 fYv~aElwgsvvlSlLFW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 149 FYVMAELWGSVVLSLLFWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111122 23678888888887 8999999999999999999988887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.37 Score=51.85 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc---CchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCccc
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA---PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA 499 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~---P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~ 499 (556)
+.......+.+..+|.+++.....+...|.. |.+ ||..++.....+.+|+.++..+.|.+.+..+ .
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~------~---- 153 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG------P---- 153 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC------C----
Confidence 4445556677788999999999888888874 545 8888999999999999999999987765322 1
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008719 500 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYR 531 (556)
Q Consensus 500 ~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~ 531 (556)
...|++.+.+..+..+..+++..|
T Consensus 154 --------~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 154 --------QGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred --------eEEehHHHHHHHHHHHHHHHhhhh
Confidence 123566666666555555555444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.6 Score=50.05 Aligned_cols=138 Identities=9% Similarity=-0.092 Sum_probs=105.1
Q ss_pred hHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 008719 10 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 89 (556)
Q Consensus 10 ~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 89 (556)
.-..+..|++.. |+++...|..=+.-.+....+.....++.+| +|..|+=+++.........++..+.+.+...
T Consensus 277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~---- 350 (432)
T PF06963_consen 277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGSP---- 350 (432)
T ss_pred CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence 345577888765 9999999999999999999999999999999 8999998888888776666666554432211
Q ss_pred CccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 008719 90 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 169 (556)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 169 (556)
+ ...+...+..+.++.=+|-=++--++.-++.|..|+++ |+...+......++--++-..
T Consensus 351 -~-------------~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 351 -F-------------SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred -c-------------hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHH
Confidence 0 11344555555555555666778889999999999888 999999999999888887776
Q ss_pred HHHH
Q 008719 170 LVVY 173 (556)
Q Consensus 170 i~~~ 173 (556)
++-.
T Consensus 411 ~~ii 414 (432)
T PF06963_consen 411 LTII 414 (432)
T ss_pred HHhc
Confidence 5543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.63 Score=50.09 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=97.5
Q ss_pred HhHHHHHHHHHHHHHhhHHHHhhhcccchh-------HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCC
Q 008719 29 SSNAVNNFLGISQASSVLGGFLADAYLGRY-------WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 101 (556)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~G~laD~~~Grr-------~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (556)
.+|..+.-.+.-.+.+|+-.++--+ ++|+ .-+.+++.+...+++++........
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~------------------ 386 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFG------------------ 386 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc------------------
Confidence 4455555555556666666666665 4443 2356666777777666665421111
Q ss_pred CCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH------hh
Q 008719 102 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY------IQ 175 (556)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~------l~ 175 (556)
+++...+.++++...+++++|+=.+.|...++++...|+.- .+..++.+......|..++..+.+. ..
T Consensus 387 ~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~ 460 (498)
T COG3104 387 GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAY 460 (498)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhh
Confidence 11223678999999999999999999999999999999876 7888888888888888877766652 22
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhc
Q 008719 176 MEHGWGSAFGALAIAMGISNMLFFIGT 202 (556)
Q Consensus 176 ~~~gw~~~f~i~~~~~~~~~~~~~~~~ 202 (556)
+.......|+..+...++..+.+....
T Consensus 461 ~~~~~~~~F~~~g~v~i~~~~~~~~~~ 487 (498)
T COG3104 461 TAFIEGRVFGTIGVVAIVIGILLLLLS 487 (498)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 223345566666555444444444433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=93.79 E-value=3.7 Score=44.57 Aligned_cols=59 Identities=7% Similarity=-0.027 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhh-hhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 427 LLIQYCLIGIAEVFCIV-GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 427 lii~~~l~g~g~~~~~~-~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
....|+...+-..++.. ..|.++.+....++..+..++.....++|..+++.+...+..
T Consensus 131 ~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 131 FALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555554444444 889999999999999999999999999999999998887754
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.9 Score=44.52 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCC
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 502 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~ 502 (556)
.+|+....|+++..-..+..+....-+.+...++.=|...|+.++..-+- =+.+.-++.|..| . + ++--.
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~l---QsilT~iVvd~~g--~--~---L~ir~ 394 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALIL---QSILTLIVVDDRG--L--G---LDIRT 394 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHH---HHhheEEEEcccc--c--C---CCcce
Confidence 57788888999888888777777777777777788888888877543322 2222222222111 0 0 00000
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Q 008719 503 NTGRFDYLYWLLAVLSVINFCAFLYS 528 (556)
Q Consensus 503 ~~~~~~~~f~~~~~~~~v~~i~~~~~ 528 (556)
+---|..+|..++++.++.....+..
T Consensus 395 Q~~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 395 QFVVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred eEEEEeehHHHHHHHHHHHHHHHHHH
Confidence 00113356888888888876654433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.74 E-value=5.6 Score=41.25 Aligned_cols=142 Identities=15% Similarity=0.015 Sum_probs=82.7
Q ss_pred ccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCc
Q 008719 342 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 421 (556)
Q Consensus 342 ~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (556)
+...-.....+++++.+.+.|+++||. . ..+-.++.+++.++ .. .
T Consensus 74 Lf~~Gf~Ss~i~g~~~G~laD~~Grk~----------~-cl~~cily~~scl~----k~-------------------~- 118 (354)
T PF05631_consen 74 LFVAGFASSAIFGTFVGSLADRYGRKK----------A-CLLFCILYSLSCLT----KH-------------------S- 118 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchH----------H-HHHHHHHHHHHHHH----Hh-------------------c-
Confidence 334445667888999999999998873 1 22222233333222 11 1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhh-----hcCchhHHHHHHHHH-HHHhHHHHHHHHHHHHhhhccCCCCCCCC
Q 008719 422 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYE-----EAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQP 495 (556)
Q Consensus 422 ~~~~~lii~~~l~g~g~~~~~~~~~~~~~~-----~~P~~~rg~~~gl~~-~~~~ig~~lg~~l~~~i~~~~~~~~~~~~ 495 (556)
-+.+.+++.-++.|++..+.....-++... ..|++..+.-.+..+ +.+.+-.+++..+...+.+..+ .+
T Consensus 119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-----~g 193 (354)
T PF05631_consen 119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-----FG 193 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-----CC
Confidence 267778888999999998888877665543 366666666555555 3344445555555555544322 00
Q ss_pred CcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 496 NWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 496 ~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
+ -.-|.....+.+++.+.....++|..+
T Consensus 194 ~-----------vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 194 P-----------VAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred C-----------cchHHHHHHHHHHHHHHHHhcccccCC
Confidence 0 123666666666666665555665444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.8 Score=46.60 Aligned_cols=119 Identities=19% Similarity=0.104 Sum_probs=82.4
Q ss_pred HHHHHHHhhHHHHhhhc--ccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCC--CccchhHHHH
Q 008719 37 LGISQASSVLGGFLADA--YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE--PAKSWQMLYL 112 (556)
Q Consensus 37 ~~~~~~~~~~~G~laD~--~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 112 (556)
..+..++..+.+.+.+| .+||++++.++..+..+++++.-++. |. .+|+.+.-+ .....+....
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~----------dap~~~t~~~~~~~~~~~~~~ 356 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PN----------DAPLRPTDSPPLLFTPSYYLA 356 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cc----------cCCCCCCcccccccccchhHH
Confidence 44445555666666655 27999999999999998888877751 21 222222211 1222344556
Q ss_pred HHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 113 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 174 (556)
Q Consensus 113 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l 174 (556)
.+.-++.|++-+......+.++++..| ++ |..+++++-.-..++..++.+.....
T Consensus 357 ~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 357 LIIGFLLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 666788999999999999999999994 44 88899998888888888766554443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.44 E-value=1 Score=47.98 Aligned_cols=130 Identities=13% Similarity=0.035 Sum_probs=86.9
Q ss_pred CcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcC
Q 008719 340 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 419 (556)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (556)
+.+....++.-++.+|+.+...|+...|+++|| .-+.++....+++++++++..-.-.-..++. ..+.
T Consensus 70 S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR------PfI~~~s~~i~~~l~Lig~aaDig~~lgd~~------~~~~ 137 (498)
T KOG0637|consen 70 SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR------PFILAGSLLIAVSLFLIGYAADIGLLLGDNE------RKPV 137 (498)
T ss_pred cccccccccccceeccccccccccccccccccc------chHHHhhHHHHHHHhhhhhHhhhhHHhcCCc------cccc
Confidence 344556678889999999999999988876542 3366777778888888776643211111111 1111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHH-HHHHHHHHHhHHHHHHHHHHH
Q 008719 420 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI-GSAYAALAGGLGCFAASILNS 481 (556)
Q Consensus 420 ~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~-~~gl~~~~~~ig~~lg~~l~~ 481 (556)
....+...++.+.+.=++.-.+..+.=++..+..-.+.+-+ +.+.+.++..+|+.+|=++.+
T Consensus 138 ~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 138 KPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred chHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 11344445566666667777777777888888865555556 999999999999998866544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=92.26 E-value=20 Score=39.03 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 425 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 425 ~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
..++..+++..+..-..+++..++-.+.+++.+-|++|.+.|+..++|+.--..++-.+.|
T Consensus 406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 3455678888888888999999999999999999999999999999998877766665554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=91.53 E-value=2.8 Score=38.31 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 483 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i 483 (556)
..+.+++.-++.|++.++.....-.++.+..+++.|++..|++....+.+.++|..+.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999999988888888887665544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=89.64 E-value=33 Score=36.95 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHH
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 481 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~ 481 (556)
+-++.++..+++|+..+........+..+.+++++|..+..+..++-.+|-..|+.+.-
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666889999999999999999999999999999999999888888888876643
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=85.64 E-value=40 Score=35.93 Aligned_cols=62 Identities=19% Similarity=0.296 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 008719 423 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 485 (556)
Q Consensus 423 ~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~ 485 (556)
+..++-+..++.|++.+ .-.+-+++++..+|++.=-++.+......-+|.+++..+...+..
T Consensus 93 sv~~mq~~q~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888888877 467888999999999998899998888888898988888876654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.86 E-value=11 Score=37.71 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=85.2
Q ss_pred HhHHHHHHHHHHHHHhhHHHHhhhcccchh--HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCccc
Q 008719 29 SSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 106 (556)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~G~laD~~~Grr--~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (556)
-|.+.+.|.+++.+++-+...+..| -..| ....+.+.+......+..+..+ ..|. +
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~-s~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP~-----k------------- 341 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSR-SSPKVESYMQIVFLVSIAALLLPILTSS---VSPS-----K------------- 341 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhc-CCcccchHHHHHHHHHHHHHHHHHHHhc---cCCC-----c-------------
Confidence 4788888888888888888777776 2222 2344444443333333222211 1121 1
Q ss_pred hhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 008719 107 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 186 (556)
Q Consensus 107 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i 186 (556)
.+...-.++..+.-.+.|.+.|.+..+=....|+++ |...++++..-.|+=..++-..--.=....+-|..|-+
T Consensus 342 es~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~i 415 (454)
T KOG4332|consen 342 ESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGI 415 (454)
T ss_pred CCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhh
Confidence 122222445555667788999999999999999888 99999999888777665443210000112345788888
Q ss_pred HHHHHHHHHHH
Q 008719 187 LAIAMGISNML 197 (556)
Q Consensus 187 ~~~~~~~~~~~ 197 (556)
..+...++.+.
T Consensus 416 cS~~~~~a~i~ 426 (454)
T KOG4332|consen 416 CSAFLFVASIL 426 (454)
T ss_pred hHHHHHHHHHH
Confidence 87776666544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 556 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 4e-10 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 338 bits (868), Expect = e-110
Identities = 108/557 (19%), Positives = 204/557 (36%), Gaps = 71/557 (12%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLGISQASSVLGGFLADAY 54
ER +++G+ + F+ + S A + + ++F+ +LGG++AD +
Sbjct: 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF 81
Query: 55 LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 114
G+Y TI + IY G + + + YT
Sbjct: 82 FGKYNTILWLSLIYCVGHAFLAIFEH---------------------------SVQGFYT 114
Query: 115 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 174
L++ G+ GI+P VSSF DQFD+ K+ + F+ FY ++ G+ A + +
Sbjct: 115 GLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171
Query: 175 QMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFS 234
G AFG + M ++ + F++G Y H P V+ +A +
Sbjct: 172 LKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG 231
Query: 235 SSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LELKEDVINPSPWKLCTV 288
+ L + + G SA I L A + + K
Sbjct: 232 NIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPD 289
Query: 289 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGL 348
V+ V++++R++ + A + + + + QA M + M L
Sbjct: 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWFEPAMMQALNPL 346
Query: 349 SIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAIS 408
+ L++ P R+ + L+++G G+A++ LS I G + +
Sbjct: 347 LVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLMMDGGSA- 402
Query: 409 HGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALA 468
LS +W ++ Y L+ EV LEF Y +AP AMK ++ L+
Sbjct: 403 -------------LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLS 449
Query: 469 GGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS 528
+G + N +KS T + ++ F ++ A +++ F
Sbjct: 450 VTVGNLWVLLANVSVKSPTVT-----EQIVQTGMSVTAFQMFFF--AGFAILAAIVFALY 502
Query: 529 AYRYKYRSEQKHGNDYE 545
A Y+ + + E
Sbjct: 503 ARSYQMQDHYRQATGSE 519
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 39/212 (18%), Positives = 82/212 (38%), Gaps = 37/212 (17%)
Query: 1 MAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFLADAYL 55
M ER +Y+G+ ++ +M++++ + A +++ + + + S +GGF+AD +
Sbjct: 23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII 82
Query: 56 GRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTV 115
G + + + G + A + L+
Sbjct: 83 GARPAVFWGGVLIMLGHIVL----------------------------ALPFGASALFGS 114
Query: 116 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 175
+ + G ++P VS+ +DE + D F+ F + +GA +A +V Q
Sbjct: 115 IILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQ 170
Query: 176 MEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 207
G+ AF AI M I ++++ G
Sbjct: 171 EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 1e-06
Identities = 88/603 (14%), Positives = 159/603 (26%), Gaps = 219/603 (36%)
Query: 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLG---GFLADAYLGRYWTIAIFTTIY 68
V+ +F+ + V F+ VL FL ++ T +Y
Sbjct: 61 VSGTLRLFWTLLSK---QEEMVQKFVE-----EVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 69 LAGLTGITLCATMKVFMPNQDNCDR------ISQLLGSCEPAKSWQMLYLYTVLY-ITGF 121
+ L +VF N R + Q L PAK ++ + G
Sbjct: 113 IEQRD--RLYNDNQVFAK--YNVSRLQPYLKLRQALLELRPAK-------NVLIDGVLGS 161
Query: 122 G----AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 177
G A + YK F F+L++
Sbjct: 162 GKTWVAL---------------DVCLSYKVQCKMDFKIFWLNL----------------- 189
Query: 178 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK--RHAAFSS 235
+ + + + L + P + R S + + A R+ + + +
Sbjct: 190 ---KNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 236 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL----CTVTQV 291
L+ L +V N W C
Sbjct: 246 CLLV--------------------------LL--------NVQNAKAWNAFNLSC----- 266
Query: 292 EEVKTLV--RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLS 349
K L+ R +T+FL+ + +++ H L S
Sbjct: 267 ---KILLTTR-----------FKQVTDFLSAATTTHISLDHHSMTLTPDEV-------KS 305
Query: 350 IFL-ILSLYYSTFVPLCRRI-TGHPRGASQLQRVGIGLAVSILSVIWAGI------FERY 401
+ L L L R + T +P +SI I I ++ +
Sbjct: 306 LLLKYLDCRPQD---LPREVLTTNP------------RRLSI---IAESIRDGLATWDNW 347
Query: 402 RR------NYAISHGYE----------FSFLTAMPD--------LSAYWL-LIQYCLIGI 436
+ I F L+ P LS W +I+ ++ +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 437 AEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN------SIIKSVTGNP 490
L+E ++ ++ SI S Y L + N SI+ N
Sbjct: 408 VNKLHKYSLVE---KQPKESTISIPSIYLEL-------KVKLENEYALHRSIVDHY--NI 455
Query: 491 KKGQPNWLAQNINTGRFD-YLYWLLAV-LSVINFCAFLYSAYRYKYRSEQKHGNDYEVME 548
K + ++ D Y Y + L I + +R + D+ +E
Sbjct: 456 PKTFDSD---DLIPPYLDQYFYSHIGHHLKNIEH-PERMTLFRMVFL-------DFRFLE 504
Query: 549 NKL 551
K+
Sbjct: 505 QKI 507
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 556 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.89 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.86 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.32 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.2 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.15 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.99 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.78 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.57 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.31 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=277.35 Aligned_cols=438 Identities=18% Similarity=0.230 Sum_probs=291.7
Q ss_pred cchhhhhhhHHhHHHHHHHh-----hCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008719 2 AERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 76 (556)
Q Consensus 2 ~~~~~~~~~~~~~~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~ 76 (556)
++++++|++.++++.|+++. +|.+..+.+++.+.+.++..++++++|+++||++|||+++.++.++..++.++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 24 WERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999988 9999999999999999999999999999999945999999999999999998888
Q ss_pred HhhhccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHH
Q 008719 77 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 156 (556)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 156 (556)
++ .+.+.++++|+++|++.|...|+..++++|.+|+++.+ |+++++++
T Consensus 104 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~ 151 (491)
T 4aps_A 104 LP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIF 151 (491)
T ss_dssp SC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHH
T ss_pred Hh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHH
Confidence 75 46788999999999999999999999999999987632 77788889
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccccc---CCCC-CchhHHHHHHHH------HH
Q 008719 157 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR---LPGG-SPLTRVAQVLVA------AF 226 (556)
Q Consensus 157 ~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~------~~ 226 (556)
+...++|..+||.+++++.+..||+++|++.++..+++.+..+...++...+ ++++ .+..+..+.... ..
T Consensus 152 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 231 (491)
T 4aps_A 152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGF 231 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887776666655443332211 1111 111111110000 00
Q ss_pred hhccccccccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHH
Q 008719 227 RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPAC 306 (556)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (556)
.-.... +....+ . ..++ ................ ....|+... ....++++......+...
T Consensus 232 ~~~~~~--------~~~~~~-~-------~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 232 IAIIVV--------MNLVGW-N-------SLPA--YINLLTIVAIAIPVFY-FAWMISSVK-VTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp HHHHHH--------HHHHSS-C-------CTTH--HHHHHHHHHHHHHHHH-HHHHC-------------CTTHHHHHHH
T ss_pred HHHHHH--------HHhccC-c-------cccc--chhhhhHHHHHHHHHH-HHHHhhccc-ccHHHHHHHHHHHHHHHH
Confidence 000000 000000 0 0000 0000000000000000 000000000 011223333344445555
Q ss_pred HHHHHHHHhhcchhHHHHhhh-cccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHH
Q 008719 307 TIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGL 385 (556)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~ 385 (556)
...++..+.+..+.+..+... .+.+ ....+.+...+.+..++..++.+++.||+.||. ......+..|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~ 361 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGL 361 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHH
Confidence 666677777666654443332 1222 245666777888888888999999988887773 34455677888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHH
Q 008719 386 AVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA 465 (556)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~ 465 (556)
++.+++++++........ + ..+ .+.+++++.+++.+++++...+..++++.+..|++.||+++|+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~---~----------~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 427 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYG---T----------SGK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW 427 (491)
T ss_dssp HHHHHHHTTTHHHHHHCC---C----------CTT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH
T ss_pred HHHHHHHHHHHHHHHhcC---C----------CCC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888888877766542210 0 001 36677788899999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 466 ALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 466 ~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
++...+|..+++.+.+.+.+. ++...|+..++++++..+..+.+.++.++
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNAK-------------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGGS-------------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHhcc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876541 12356788888888877777666655443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=281.07 Aligned_cols=418 Identities=13% Similarity=0.058 Sum_probs=252.0
Q ss_pred hhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCCCcc
Q 008719 26 FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 105 (556)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (556)
..+.+++.+++.++..++++++|+++|| +|||++++++.+++.++.++++++......... ...-...-
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~----------~~~~~~~~ 122 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINP----------DNTVPVYL 122 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS----------SSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----------hhHHHHHH
Confidence 3567899999999999999999999999 899999999999999999999864210000000 00000001
Q ss_pred chhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc--------c
Q 008719 106 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM--------E 177 (556)
Q Consensus 106 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~l~~--------~ 177 (556)
..+.+.++++|+++|+|.|+..++...+++|..|+++ |++..++......+|.++++.++..+.. .
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 2578999999999999999999999999999999988 9999999999999999999988776653 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCccccCCCcc
Q 008719 178 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKI 257 (556)
Q Consensus 178 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 257 (556)
.+||+.+.+..+..++..+..+. .||+|+| +..+++.+++.+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~-L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLMLLYT--------------------------------VPESPRW-LMSRGKQEQAEGILRKI 243 (491)
T ss_dssp THHHHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHH-HHHTTCHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHH-HHHcCchhHHHHhHHHh
Confidence 45777777766654444333221 6888888 77776666554433322
Q ss_pred ccCCchhH--hHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcch--hHHHHhhhcccccc
Q 008719 258 AHTDDFRC--LDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLT--LSVQQAYTMNTHMG 333 (556)
Q Consensus 258 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 333 (556)
...++.+. .+.......+ ................... ....+.+... ....+........+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4gc0_A 244 MGNTLATQAVQEIKHSLDHG-------------RKTGGRLLMFGVGVIVIGV--MLSIFQQFVGINVVLYYAPEVFKTLG 308 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------HHHTTHHHHSCCTHHHHHH--HHHHHHHHTCHHHHHHHHHHHHHHSS
T ss_pred cCCchhHHHHHHHHHHHHhh-------------hhhhhHHHHhcccHHHHHH--HHHHHHHHhhhhHHHhcchHHHHhcC
Confidence 21110000 0000000000 0000000000000000100 0111111111 00000000000000
Q ss_pred cccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccc
Q 008719 334 KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEF 413 (556)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (556)
..............+..++...+...+.||++||. ....+...++++++.++.....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~-----------~~~~~~~~~~~~~~~l~~~~~~------------ 365 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFYT------------ 365 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH-----------HHHHHHHHHHHHHHHHHHHHHT------------
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhccchHHHHHHHHHHHHHHhc------------
Confidence 00111112233344555666666677778877773 3556666677776666554321
Q ss_pred cccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCC
Q 008719 414 SFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKG 493 (556)
Q Consensus 414 ~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~ 493 (556)
. . .....++..+++.........|..+.+..|..|++.|++++|+.+..+++++++++.+.+.+.+...
T Consensus 366 ----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~----- 434 (491)
T 4gc0_A 366 ----Q-A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW----- 434 (491)
T ss_dssp ----T-C-CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH-----
T ss_pred ----c-c-chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 0 1 1222222222222222333456778999999999999999999999999999999999887654211
Q ss_pred CCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCchhhhhc
Q 008719 494 QPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMEN 549 (556)
Q Consensus 494 ~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (556)
... ..+....|++.++++++..++.+++.||+|++++||.++.+|++++
T Consensus 435 ----~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 435 ----LVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp ----HHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred ----HHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 000 0011256888999999999999999999999999999888876543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=282.12 Aligned_cols=467 Identities=21% Similarity=0.336 Sum_probs=279.3
Q ss_pred cchhhhhhhHHhHHHHHHHhhC------CChhhHhHHHHHHHHHHHHHhhHHHHhhhccc-chhHHHHHHHHHHHHHHHH
Q 008719 2 AERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYLAGLTG 74 (556)
Q Consensus 2 ~~~~~~~~~~~~~~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grr~~~~~~~~~~~i~~~l 74 (556)
++++++|++.+.++.|+++++| ++..+++++.+.+.++..++.+++|+++|| + |||+++.++.++..++.++
T Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999 999999999999999999999999999999 8 9999999999999999988
Q ss_pred HHHhhhccccCCCCCCccccccccCCCCCccch-hHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhh--
Q 008719 75 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR-- 151 (556)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~-- 151 (556)
++++ . +.+.++++|+++|++.+...|+..++++|.+|+++ |++
T Consensus 102 ~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 147 (524)
T 2xut_A 102 LAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQ 147 (524)
T ss_dssp HHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHH
T ss_pred HHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHH
Confidence 8886 4 67889999999999999999999999999999887 754
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcc
Q 008719 152 -FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRH 230 (556)
Q Consensus 152 -~~~~~~~~~~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
.+++.+...++|.++||.+++++.+..||+++|++.++..+++.+..+...++.+.+++++++..+..+.+....+++.
T Consensus 148 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (524)
T 2xut_A 148 KAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKV 227 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhh
Confidence 4555899999999999999999998899999999988877666665554444333222222211111111111111110
Q ss_pred ccccccccccccccCCCCccccCCCccccCCchhHhHHHHh---hhccCCCCCCCCc-------ccchhhHHHHHhhhhh
Q 008719 231 AAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL---ELKEDVINPSPWK-------LCTVTQVEEVKTLVRL 300 (556)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 300 (556)
... +.... +.+......... ...+.+.......... ...+. ....+|+ ........++++....
T Consensus 228 ~~~-~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (524)
T 2xut_A 228 EGK-GNIGL-VLALIGGVSAAY---ALVNIPTLGIVAGLCCAMVLVMGF-VGAGASLQLERARKSHPDAAVDGVRSVLRI 301 (524)
T ss_dssp TTH-HHHHH-HHHHHHHHHHHH---TGGGTTTTCSSHHHHHHHHHHHHH-HHTGGGTHHHHSCCSCCSSSSTTTTTHHHH
T ss_pred ccc-Cccch-hhhhhhhhhhhh---hhcccchhhhhhhhhhhhhhhhcc-cccchhhHHhhhhccccHhHHHHHHHHHHH
Confidence 000 00000 000000000000 0000000000000000 00000 0000010 0000111223333333
Q ss_pred hhhhHHHHHHHHHHhhcchhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHH
Q 008719 301 VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQR 380 (556)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~ 380 (556)
..+......++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..++.+|..++ ....++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 375 (524)
T 2xut_A 302 LVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRK 375 (524)
T ss_dssp HHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHH
T ss_pred HHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHH
Confidence 33344444455555666565555544433321 0 23445566677777788888877654444443222 344566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHH
Q 008719 381 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI 460 (556)
Q Consensus 381 i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~ 460 (556)
+.+|.++.+++++++......+ .+ ..+ .+.+++++.+++.+++++...+..++++.+.+|++.||+
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~-----~~--------~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 441 (524)
T 2xut_A 376 MGAGIAITGLSWIVVGTIQLMM-----DG--------GSA-LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441 (524)
T ss_dssp HHTHHHHHHHHHHTTTTTTTTT-----TT--------TCC-CCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----cC--------CCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence 7778888877776655432100 00 001 356677888999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccCCCCCCCCCcccC-CCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008719 461 GSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 537 (556)
Q Consensus 461 ~~gl~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~~ 537 (556)
++|+.++..++|+.+++.+.+.+.+..+ .+|.+. +++. ....|++.+++.+++.+.++++.+++++++.
T Consensus 442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 442 IMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp THHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc------ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 9999999999999999999998765221 123211 0111 1233778888888887777666666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-26 Score=239.40 Aligned_cols=380 Identities=12% Similarity=0.008 Sum_probs=245.8
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHH----hhhccccCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL----CATMKVFMP 86 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~----~~~~~~~~~ 86 (556)
.+.++ ++.+++ .+..+.+++.+.+.++..++.+++|+++|| +|||++++++.++.+++.+++++ +
T Consensus 48 ~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~-------- 116 (451)
T 1pw4_A 48 ALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWAT-------- 116 (451)
T ss_dssp HHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred HHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhcc--------
Confidence 33444 445567 999999999999999999999999999999 89999999999999999999988 5
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
.+.+.++++|+++|++.+...++..++++|.+|+++ |++++++.+...++|.++
T Consensus 117 --------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~ 170 (451)
T 1pw4_A 117 --------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGI 170 (451)
T ss_dssp --------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTS
T ss_pred --------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999999887 999999999999999999
Q ss_pred HHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccC
Q 008719 167 AFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVP 245 (556)
Q Consensus 167 g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (556)
||.+++++.+.+| ||++|++.++..++..++.++..++.+.+...++. . .+ ++.
T Consensus 171 g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~---~~~ 225 (451)
T 1pw4_A 171 PPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI---------------------E-EY---KND 225 (451)
T ss_dssp HHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC---------------------T-TT---CCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh---------------------h-hh---ccc
Confidence 9999999888888 99999999887666655554444432211100000 0 00 000
Q ss_pred CCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHh
Q 008719 246 GKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA 325 (556)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (556)
+.+ +..... .+ ...++..........+.+.. ......+....+......+..+.
T Consensus 226 ~~~-------~~~~~~------------~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 279 (451)
T 1pw4_A 226 YPD-------DYNEKA------------EQ----ELTAKQIFMQYVLPNKLLWY---IAIANVFVYLLRYGILDWSPTYL 279 (451)
T ss_dssp ------------------------------------CCTHHHHHHTSSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHB
T ss_pred ccc-------cchhhh------------hc----ccccccchHHHHHcCHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000 00 00000000000000111111 11111112222112222222211
Q ss_pred hhcccccccccccCCcccccchhHHHHHHHhhhhhhhhh--cccccCCCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 008719 326 YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPL--CRRITGHPRGASQLQRVGIGLAVSI-LSVIWAGIFERYR 402 (556)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~r~~~~~~~~~~~~~i~~g~~~~~-~~~~~~~~~~~~~ 402 (556)
. ...+.-....+.+.....+..++..++..++.||+ .+| +.+..+..+.. ++++++...
T Consensus 280 ~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---- 341 (451)
T 1pw4_A 280 K---EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLVTIATIVYWMN---- 341 (451)
T ss_dssp T---TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHHHHHHHHTTSC----
T ss_pred H---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHHHHHHHHHHHh----
Confidence 1 11110011123344455556666777777777766 443 23444444433 444333221
Q ss_pred hhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhH-HHHHHHHHHH
Q 008719 403 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL-GCFAASILNS 481 (556)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~i-g~~lg~~l~~ 481 (556)
++.+.+.+....++.|++.....+..+++..+..|++.||+++|+.+....+ |..+++.+.+
T Consensus 342 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 342 -----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1024556667778888888888898999999999999999999999999999 9999999999
Q ss_pred HhhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008719 482 IIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR 531 (556)
Q Consensus 482 ~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~ 531 (556)
.+.+..+ +...|++.+++.+++.+..+...++
T Consensus 405 ~l~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 405 YTVDFFG------------------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHSSC------------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC------------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8877433 2467788888888877766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-24 Score=227.18 Aligned_cols=334 Identities=9% Similarity=0.011 Sum_probs=223.7
Q ss_pred HHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHH---HHhhhccccCCC
Q 008719 11 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI---TLCATMKVFMPN 87 (556)
Q Consensus 11 ~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~ 87 (556)
...+.+++++++|.+..+.+++.+.+.++..++.+++|+++|| +|||++++++.++.+++.+++ +.+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~--------- 114 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEI--------- 114 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 3344456778999999999999999999999999999999999 899999999999999999988 443
Q ss_pred CCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 008719 88 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 167 (556)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g 167 (556)
.+.+.++++|++.|++.|...+...++++|.+|+++ |++.+++.+...++|.++|
T Consensus 115 -------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g 169 (438)
T 3o7q_A 115 -------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIA 169 (438)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999988 9999999999999999999
Q ss_pred HHHHHHhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHHhc-ccccccCCCCCchhHHHH
Q 008719 168 FTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFIGT-PLYRHRLPGGSPLTRVAQ 220 (556)
Q Consensus 168 ~~i~~~l~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 220 (556)
|.+++++. ...+ ||++|++.++..++..+..+..+ ++.+.+++++++
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------ 243 (438)
T 3o7q_A 170 VVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK------ 243 (438)
T ss_dssp HHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS------
T ss_pred HHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc------
Confidence 99999988 5444 99999877766554444433321 111000000000
Q ss_pred HHHHHHhhccccccccccccccccCCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhh-
Q 008719 221 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR- 299 (556)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 299 (556)
.. +..+... ...+.+.+..
T Consensus 244 ---------------------------------------~~--~~~~~~~-------------------~~~~~~~~~~~ 263 (438)
T 3o7q_A 244 ---------------------------------------QG--SFSASLS-------------------RLARIRHWRWA 263 (438)
T ss_dssp ---------------------------------------TT--SHHHHHH-------------------HHTTCSHHHHH
T ss_pred ---------------------------------------cc--chhhhHH-------------------HHHhChHHHHH
Confidence 00 0000000 0000011111
Q ss_pred hhhhhHHHHHHHHHHhhcchhHHHHhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHH
Q 008719 300 LVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQ 379 (556)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~ 379 (556)
.+..+.....+.......+.++..+..+.+.. ..+.+.....+..++..++..++.||+.+| +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~ 326 (438)
T 3o7q_A 264 VLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG------FAANYLTGTMVCFFIGRFTGTWLISRFAPH-----------K 326 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------H
Confidence 11111111112222222222212221122211 122334444555666677777777776555 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHH
Q 008719 380 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 459 (556)
Q Consensus 380 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 459 (556)
.+..+.++.+++++...... +. +.+...++.+++.+...|..+++..+..|++ ++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~-----------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 381 (438)
T 3o7q_A 327 VLAAYALIAMALCLISAFAG-----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK 381 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH
T ss_pred HHHHHHHHHHHHHHHHHHcC-----------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc
Confidence 46666666666655544321 22 2344557788888889999999999999977 99
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhccC
Q 008719 460 IGSAYAALAGGLGCFAASILNSIIKSVTG 488 (556)
Q Consensus 460 ~~~gl~~~~~~ig~~lg~~l~~~i~~~~~ 488 (556)
.++++.. .+.+|+.+++.+.+.+.+..|
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999887 677999999999998877543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-23 Score=213.13 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=137.6
Q ss_pred hhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 008719 7 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 86 (556)
Q Consensus 7 ~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (556)
...+.+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++..+..++.++++.+
T Consensus 16 ~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~-------- 85 (375)
T 2gfp_A 16 QTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTT-------- 85 (375)
T ss_dssp HHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHh--------
Confidence 3334444444 467899999999999999999999999999999999 899999999999999999988886
Q ss_pred CCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 008719 87 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 166 (556)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~ 166 (556)
.+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.....++|..+
T Consensus 86 --------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~ 139 (375)
T 2gfp_A 86 --------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLL 139 (375)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHH
T ss_pred --------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999888 999999999999999999
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 008719 167 AFTLVVYIQMEHGWGSAFGALAIAMGISNM 196 (556)
Q Consensus 167 g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~ 196 (556)
+|.+++++.+..+||++|++.++..++..+
T Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999988999999988776554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-22 Score=213.77 Aligned_cols=381 Identities=12% Similarity=0.018 Sum_probs=212.4
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
++..+.++++.|+++++|+|..+++++.+.+.++..++++++|+++|| +||||+++++..+..++...+......
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~---- 96 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFG---- 96 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHH----
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 444556789999998999999999999999999999999999999999 899999998888765532211110000
Q ss_pred CCCCCccccccccCCCCCccchhH-HHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
... ..+..++++.+++.|...+...+...+..++.. + +++..++......++|.
T Consensus 97 ---------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~---~~~~~~g~~~~~~~~g~ 151 (417)
T 2cfq_A 97 ---------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-R---RSNFEFGRARMFGCVGW 151 (417)
T ss_dssp ---------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-H---HHTCCHHHHSSSTTTHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-h---hcccchHHHHHHHHHHH
Confidence 000 012344555555544444444444444433221 1 15666677777789999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccccccccccc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEV 244 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (556)
.++|.+++++.+ .+|+++|++.++..++..+..+...++ +++..+
T Consensus 152 ~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------------------ 196 (417)
T 2cfq_A 152 ALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------------------ 196 (417)
T ss_dssp HHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------------------
T ss_pred HHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------------------
Confidence 999999999876 589999987766533332222111111 000000
Q ss_pred CCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhh-hHHHHHHHHHHhhcchhHHH
Q 008719 245 PGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACTIMLNVILTEFLTLSVQ 323 (556)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 323 (556)
.++..+. ..++.+..+... ..++ +........ ......+.....+.+.++..
T Consensus 197 --~~~~~~~-----~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2cfq_A 197 --VANAVGA-----NHSAFSLKLALE-------------------LFRQ-PKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249 (417)
T ss_dssp --SSSSSSS-----CCCCCCHHHHHH-------------------HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccccccc-----ccccccHHHHHH-------------------HhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000000000000 0001 111111111 11111111111122222211
Q ss_pred HhhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008719 324 QAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRR 403 (556)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~ 403 (556)
..... ..+ ....+....++.+...+...+..++.||++|| +.+..+.++.+++++.....
T Consensus 250 -~~~~~-~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~----- 309 (417)
T 2cfq_A 250 -FFATG-EQG--TRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA----- 309 (417)
T ss_dssp -TSSSH-HHH--THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC-----
T ss_pred -HHhcc-CCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh-----
Confidence 11000 000 00012223334444555666777777777665 33556666666554443221
Q ss_pred hhhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHH-HHHHHhHHHHHHHHHHHH
Q 008719 404 NYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSI 482 (556)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~ig~~lg~~l~~~ 482 (556)
+ +.+.+++..++.+++.....+..+.++.|..|++.||++.++ .+..+.+|+.+++.+.+.
T Consensus 310 ----------------~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~ 371 (417)
T 2cfq_A 310 ----------------T--SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN 371 (417)
T ss_dssp ----------------C--SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHT
T ss_pred ----------------c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHH
Confidence 1 344455556666777777777778999999999999999998 488888999999999997
Q ss_pred hhhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008719 483 IKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 534 (556)
Q Consensus 483 i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~ 534 (556)
+.+..+ +...|++.+++.+++.+..+...+++++
T Consensus 372 l~~~~g------------------~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 372 MYESIG------------------FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSH------------------HHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHhcC------------------cHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 765322 3456788888888777666555554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-12 Score=132.59 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=139.5
Q ss_pred hhhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhccc--chhHHHHHHHHHHH-HHHHHHHHhhh
Q 008719 4 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTIAIFTTIYL-AGLTGITLCAT 80 (556)
Q Consensus 4 ~~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--Grr~~~~~~~~~~~-i~~~l~~~~~~ 80 (556)
.++++++..+++.|+++.+|.+..+++++.+.+.++..++.++.|+++|| + |||+.+.++..+.. ++.+++...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 341 (451)
T 1pw4_A 265 YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMN-- 341 (451)
T ss_dssp HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHh--
Confidence 35667788899999998899999999999999999999999999999999 8 99998888777665 554444432
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
+. .+.+.+.+..++.|++.+...+...++..|.+|+++ |++++++.+...
T Consensus 342 -----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~ 391 (451)
T 1pw4_A 342 -----PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFG 391 (451)
T ss_dssp -----CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHH
T ss_pred -----cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHHHHHH
Confidence 10 255677778888999999998989999999999887 999999999999
Q ss_pred HH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 008719 161 TV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 201 (556)
Q Consensus 161 ~l-G~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~ 201 (556)
++ |..++|.+.|++.+..||+.+|++.++..+++.++.+..
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999999999888777666655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=121.50 Aligned_cols=153 Identities=10% Similarity=0.018 Sum_probs=124.9
Q ss_pred hhhhhhHHhHHHH-HHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008719 5 MAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 83 (556)
Q Consensus 5 ~~~~~~~~~~~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (556)
.+++++..+++.| +++.+|.+..+++++.+.+.++..++.+++|+++|| +|||+.+.++.++..++.+++...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~----- 345 (438)
T 3o7q_A 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFA----- 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHc-----
Confidence 4556777889999 888889999999999999999999999999999999 899999999998888887776664
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
.+... .+..++.|++.+...|...++..|.+|++ ++++.++.. ...+|
T Consensus 346 -----------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 346 -----------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIG 393 (438)
T ss_dssp -----------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHH
T ss_pred -----------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHH
Confidence 23233 33447889999999999999999988844 455555554 56799
Q ss_pred HHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHH
Q 008719 164 AIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN 195 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~g-w~~~f~i~~~~~~~~~ 195 (556)
..++|.+.|++.+..| ++..|++.++..++..
T Consensus 394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999999999999988 9999998765544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9.6e-11 Score=123.25 Aligned_cols=160 Identities=10% Similarity=0.058 Sum_probs=121.8
Q ss_pred hhHHhHHHHHHHhhCC---ChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 008719 9 GLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 85 (556)
Q Consensus 9 ~~~~~~~~yl~~~lg~---s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~ 85 (556)
....+++.|+++.++. +..+.++..+...++..++.+++|+++|| +|||+++..+..+.+++.+++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~------- 309 (417)
T 2cfq_A 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFA------- 309 (417)
T ss_dssp HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3445567788765553 23455677777777888899999999999 899999998888877776555543
Q ss_pred CCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHH-HHHHHHHHH
Q 008719 86 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGA 164 (556)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~ 164 (556)
.+.+.+++..++.+++.+...+....+..|.+|++. |+++.++ ++....+|.
T Consensus 310 ---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~ 362 (417)
T 2cfq_A 310 ---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAM 362 (417)
T ss_dssp ---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHH
T ss_pred ---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHH
Confidence 234566667777788777777777889999999887 9999888 467778999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
+++|.++|++.+..|+...|.+.++..+++.+..+...+
T Consensus 363 ~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999998888999998888776666655444333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.4e-10 Score=117.56 Aligned_cols=172 Identities=12% Similarity=0.015 Sum_probs=129.3
Q ss_pred hhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHH-----HHHHHHHHHHHHHHHhhh
Q 008719 6 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTIYLAGLTGITLCAT 80 (556)
Q Consensus 6 ~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-----~~~~~~~i~~~l~~~~~~ 80 (556)
.++.....++.|+++.++.+..+.+++.+...++..++.++.|++.|| +|||+... ++..+..++..++.....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
T 4aps_A 298 IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGA 376 (491)
T ss_dssp HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566678889988888887888999999999999999999999999 89986654 666666666655554321
Q ss_pred ccccCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHH
Q 008719 81 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 160 (556)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 160 (556)
... ++...+.+.+.+..++.|++.+...+...++..|.+|++. |+++.++.+...
T Consensus 377 ~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~ 431 (491)
T 4aps_A 377 LYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSS 431 (491)
T ss_dssp HCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHH
T ss_pred hcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 000 0001355677788889999999999999999999999988 999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc
Q 008719 161 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 204 (556)
Q Consensus 161 ~lG~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 204 (556)
++|..+++.+.+++.+ .++...|.+.+...+++.+..+...++
T Consensus 432 ~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 432 SVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888876 467777877777666666555555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-07 Score=99.45 Aligned_cols=160 Identities=11% Similarity=0.019 Sum_probs=116.5
Q ss_pred HHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccc
Q 008719 15 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 94 (556)
Q Consensus 15 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 94 (556)
.+++.+..+.+..+.........+...++.++++++.|| +|||+.++.+.....++.+.++...... .
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~---~-------- 367 (491)
T 4gc0_A 300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ---A-------- 367 (491)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTT---C--------
T ss_pred chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhcc---c--------
Confidence 345556788888888888888889999999999999999 8999999999988888877766542210 0
Q ss_pred ccccCCCCCccchhHH-HHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008719 95 SQLLGSCEPAKSWQML-YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 173 (556)
Q Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~~~ 173 (556)
.... ......+..+++ ....|....+.+|.+|++. |+++.++.+...++|..+++.+.+.
T Consensus 368 ------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 368 ------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp ------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 222222223333 3345777889999999998 9999999999999999999888766
Q ss_pred hhc------ccchhHHHHHHHHHHHHHHHHHHHhcccc
Q 008719 174 IQM------EHGWGSAFGALAIAMGISNMLFFIGTPLY 205 (556)
Q Consensus 174 l~~------~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 205 (556)
+.+ ..++..+|++.++..+++.+..++..|+.
T Consensus 429 l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 429 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 543 24566778887777777777666666654
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.5e-09 Score=106.45 Aligned_cols=151 Identities=13% Similarity=-0.078 Sum_probs=115.7
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHH-HHHHHHHHHHhhhccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YLAGLTGITLCATMKV 83 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~-~~i~~~l~~~~~~~~~ 83 (556)
.+++++..+++.|+++.+|.+..+++++.+...++..++.++.|+++|| +||+. ..+... ...+..+......
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~--~~~~~~~~~~~~~~~~~~~~--- 286 (375)
T 2gfp_A 213 AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLM--WQSVICCLLAGLLMWIPDWF--- 286 (375)
T ss_dssp HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHHH--HHHHHHHHHTSSSSSHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHhhh---
Confidence 4556667777788888899999999999999999999999999999999 78732 223322 2222221111100
Q ss_pred cCCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHH
Q 008719 84 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 163 (556)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 163 (556)
+ ..+.+.+++..++.|++.+...+...++..|..| ++ |+++.++.+...++|
T Consensus 287 --~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~~~~~g 338 (375)
T 2gfp_A 287 --G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGGLQNIG 338 (375)
T ss_dssp --H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHHHHHHH
T ss_pred --c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHHHHHHH
Confidence 0 0355667788888999999999999999999987 55 999999999999999
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHH
Q 008719 164 AIVAFTLVVYIQMEHGWGSAFGALAI 189 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~gw~~~f~i~~~ 189 (556)
..++|.+.+.+.+..+|+..+.+.+.
T Consensus 339 ~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 339 SGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999887778877776443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.2e-06 Score=90.86 Aligned_cols=137 Identities=12% Similarity=0.015 Sum_probs=99.2
Q ss_pred CcccccchhHHHHHHHhhhhhhhhh-cccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccccCc
Q 008719 340 TCMPVFPGLSIFLILSLYYSTFVPL-CRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 418 (556)
Q Consensus 340 ~~~~~~~~~~~~l~~~l~~~l~~~~-~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (556)
+++.....+...+..++.+++.||+ +|| +.+.++.++.+++.++.....
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~~------------------- 106 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIFE------------------- 106 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHTS-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 3344455666677777778888877 655 346677777777766654431
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHH---HHHHHhHHHHHHHHHHHHhhhccCCCCCCCC
Q 008719 419 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY---AALAGGLGCFAASILNSIIKSVTGNPKKGQP 495 (556)
Q Consensus 419 ~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl---~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~ 495 (556)
.+.+.+++..++.|++.+...|...+++.+.+|++.|+...+. .+....+|..+++.+.+.+.+..
T Consensus 107 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 175 (524)
T 2xut_A 107 ---HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------- 175 (524)
T ss_dssp ---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred ---ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 1566777888999999999999999999999999999877666 88888899999998888765522
Q ss_pred CcccCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 008719 496 NWLAQNINTGRFDYLYWLLAVLSVINFCAFLY 527 (556)
Q Consensus 496 ~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~ 527 (556)
+| .+.|++.+++.++..+..+.
T Consensus 176 g~----------~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 GA----------AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp CH----------HHHHHHHHHHHHHHHHHHHS
T ss_pred cH----------HHHHHHHHHHHHHHHHHHHH
Confidence 24 46677777776666554433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 556 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.13 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.11 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.1e-25 Score=232.76 Aligned_cols=389 Identities=12% Similarity=0.005 Sum_probs=236.2
Q ss_pred HhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCc
Q 008719 12 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 91 (556)
Q Consensus 12 ~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (556)
..+.++++ ++|+|.+|.|++.+++.++..++.+++|+++|| +|||+++.++.++..++.++++.+...
T Consensus 45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~---------- 112 (447)
T d1pw4a_ 45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA---------- 112 (447)
T ss_dssp HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHH----------
T ss_pred HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchh----------
Confidence 34456776 589999999999999999999999999999999 899999999999999999888875221
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008719 92 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 171 (556)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~~g~~i~ 171 (556)
..+.+.+++.|++.|++.|...++..++++|.+|+++ |++++++.+...++|.++++.++
T Consensus 113 --------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~ 172 (447)
T d1pw4a_ 113 --------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLF 172 (447)
T ss_dssp --------------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHH
T ss_pred --------------hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhh
Confidence 0356789999999999999999999999999999988 99999999999999999999988
Q ss_pred HHhhcc-cchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhccccccccccccccccCCCCcc
Q 008719 172 VYIQME-HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA 250 (556)
Q Consensus 172 ~~l~~~-~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (556)
+.+... .+|++.|++.+...++..+..+...++.+.+...... ++.+.++.
T Consensus 173 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 224 (447)
T d1pw4a_ 173 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI----------------------------EEYKNDYP 224 (447)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC----------------------------TTTCCC--
T ss_pred hhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh----------------------------hhhhhhcc
Confidence 877665 4799999998887666555555544432221110000 00000000
Q ss_pred ccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHHhhhccc
Q 008719 251 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 330 (556)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (556)
+...+..+.. ....+ .........+..... .....+.+............+ ...
T Consensus 225 ~~~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~ 278 (447)
T d1pw4a_ 225 DDYNEKAEQE-------------------LTAKQ-IFMQYVLPNKLLWYI---AIANVFVYLLRYGILDWSPTY---LKE 278 (447)
T ss_dssp ------------------------------CCTH-HHHHHTSSCHHHHHH---HHHHHHHHHHHHHHHHHHHHH---BTT
T ss_pred cchhhccccc-------------------cchhh-HHHHHHHcCchHHHH---HHHhhhhhhhhhcchhhhhhh---ccc
Confidence 0000000000 00000 000000000111110 111111111111111111111 111
Q ss_pred ccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 008719 331 HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHG 410 (556)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (556)
..+.-....+.......+..++...+..++.|+..++. ..........+...+.......
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------------ 338 (447)
T d1pw4a_ 279 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--------RGATGVFFMTLVTIATIVYWMN------------ 338 (447)
T ss_dssp BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHHTTSC------------
T ss_pred ccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc--------cccccchhHHHHHHHHHHHHhc------------
Confidence 11000111233344445555666666677777766542 1111111111111111111100
Q ss_pred ccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHHHHHHhH-HHHHHHHHHHHhhhccCC
Q 008719 411 YEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL-GCFAASILNSIIKSVTGN 489 (556)
Q Consensus 411 ~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~i-g~~lg~~l~~~i~~~~~~ 489 (556)
+..+.+..++..++.+++.....+..+++..+..|++.||+++|+.+....+ |..+++.+.+.+.+..|
T Consensus 339 ---------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g- 408 (447)
T d1pw4a_ 339 ---------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG- 408 (447)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred ---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 1124566667777888888888889999999999999999999999888777 45668888888877444
Q ss_pred CCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008719 490 PKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 533 (556)
Q Consensus 490 ~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~ 533 (556)
| ...|++++++.++..++...+.++++
T Consensus 409 -------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (447)
T d1pw4a_ 409 -------W----------DGGFMVMIGGSILAVILLIVVMIGEK 435 (447)
T ss_dssp -------S----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------h----------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 35567777777777666655554433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.2e-23 Score=212.44 Aligned_cols=386 Identities=12% Similarity=-0.018 Sum_probs=221.7
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
+++..+.+.++.|+++++|+|..|.|++.+++.++..++++++|+++|| +||||+++++..+..++..++......+
T Consensus 21 ~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~-- 97 (417)
T d1pv7a_ 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGP-- 97 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHHTHHHHHHHTHHH--
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHhhhhh--
Confidence 4455566788899999999999999999999999999999999999999 8999999999998888887777652100
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 164 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 164 (556)
.........+.+.+.+.+...+.......+..++++. .+.+..+........+.
T Consensus 98 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 151 (417)
T d1pv7a_ 98 ----------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGRARMFGCVGW 151 (417)
T ss_dssp ----------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHH----HHSCCHHHHHHHHHHHH
T ss_pred ----------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchhh----hhHHHHHHHhhhhcccc
Confidence 1112233444444444444444444443333332221 15566667777888999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHhhcccccccccccccccc
Q 008719 165 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEV 244 (556)
Q Consensus 165 ~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (556)
.+++.+++.+.+. +|+..+........+..+...+..++.+.+.+++++. +
T Consensus 152 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--------------- 202 (417)
T d1pv7a_ 152 ALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV-------------G--------------- 202 (417)
T ss_dssp HHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH-------------H---------------
T ss_pred ccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhh-------------h---------------
Confidence 9999999988764 4555555554444444444333333221111110000 0
Q ss_pred CCCCccccCCCccccCCchhHhHHHHhhhccCCCCCCCCcccchhhHHHHHhhhhhhhhhHHHHHHHHHHhhcchhHHHH
Q 008719 245 PGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQ 324 (556)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (556)
...+........... .....+... ................ ....
T Consensus 203 -------------~~~~~~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~ 246 (417)
T d1pv7a_ 203 -------------ANHSAFSLKLALELF-----------------RQPKLWFLS--LYVIGVSCTYDVFDQQ----FANF 246 (417)
T ss_dssp -------------SCCCCCCHHHHHHHT-----------------TSSHHHHHH--HHHHHHHHHHHHHHHH----HHHH
T ss_pred -------------hhccccccccccccc-----------------ccccccchh--hhhHHHHHHHHhhhcc----cccc
Confidence 000000000000000 000000000 0000111111111110 0100
Q ss_pred hhhcccccccccccCCcccccchhHHHHHHHhhhhhhhhhcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008719 325 AYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRN 404 (556)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~r~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~ 404 (556)
........+..............+...+...+..++.+|.. +++.+..+.++.+++.+.....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~-----------~~~~~~~~~~~~~~~~~~~~~~------ 309 (417)
T d1pv7a_ 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIG-----------GKNALLLAGTIMSVRIIGSSFA------ 309 (417)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHHTC------
T ss_pred ccccccccccchhhhcccccccccccccchhhhhhhhcccc-----------cccchhhhHHHHHHhhhccccc------
Confidence 00000000000000111122223333444444444444443 3345667777776666555433
Q ss_pred hhhccCccccccCcCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCchhHHHHHHHH-HHHHhHHHHHHHHHHHHh
Q 008719 405 YAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCFAASILNSII 483 (556)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~lii~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~ig~~lg~~l~~~i 483 (556)
.+.+.+++..++.+++.+...+...++..+.+|++.|+++.|+. ++...+|..+++.+.|.+
T Consensus 310 -----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l 372 (417)
T d1pv7a_ 310 -----------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred -----------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25667778888999999999999999999999999999999975 566789999999999998
Q ss_pred hhccCCCCCCCCCcccCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008719 484 KSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 536 (556)
Q Consensus 484 ~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~v~~i~~~~~~~~~~~~~ 536 (556)
.+..| +...|++.+++.++..+..++..++.+..+
T Consensus 373 ~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 373 YESIG------------------FQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHC------------------HHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred HHHHC------------------HHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 87554 346788888888887777766666544433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.1e-10 Score=119.85 Aligned_cols=166 Identities=16% Similarity=0.096 Sum_probs=127.7
Q ss_pred hhhhhhHHhHHHHHHHhhCCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008719 5 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 84 (556)
Q Consensus 5 ~~~~~~~~~~~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (556)
...+++..+.+.|+++.+|.+..+.++....+.++..++.+++|+++|| ++||+..........+..........
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---- 337 (447)
T d1pw4a_ 263 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWM---- 337 (447)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTS----
T ss_pred hhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHHHHHHHHHHHHh----
Confidence 4456778888999999999999999999999999999999999999999 78775444443333332222222110
Q ss_pred CCCCCCccccccccCCCCCccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHHHHHHH-H
Q 008719 85 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-G 163 (556)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l-G 163 (556)
.+. .+.+...+..++.|++.+...+....+..|.+|++. |+++.++.+...++ |
T Consensus 338 ~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~g 392 (447)
T d1pw4a_ 338 NPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGG 392 (447)
T ss_dssp CCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHHHHHHHH
T ss_pred ccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHH
Confidence 011 355677777788899999989999999999999887 99999999888777 5
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008719 164 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 200 (556)
Q Consensus 164 ~~~g~~i~~~l~~~~gw~~~f~i~~~~~~~~~~~~~~ 200 (556)
.+++|.+.|++.+.+||+..|++.++..+++.++...
T Consensus 393 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999998877765555544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=5e-11 Score=119.56 Aligned_cols=146 Identities=10% Similarity=0.048 Sum_probs=123.7
Q ss_pred CCChhhHhHHHHHHHHHHHHHhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccCCCC
Q 008719 23 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 102 (556)
Q Consensus 23 g~s~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (556)
+.+....+.......++..++..+.|++.|| +|||+.+.++..+..++.++....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 309 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFA------------------------ 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred ccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhccccc------------------------
Confidence 3445567777888889999999999999999 899999999999988888777765
Q ss_pred CccchhHHHHHHHHHHHHHhccCcccchhhhhcccCCCCCcchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhcccchh
Q 008719 103 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWG 181 (556)
Q Consensus 103 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~i~~~l~~~~gw~ 181 (556)
.+.+.+++..++.|++.+...+...+++.|.+|++. |++..+..+ ....+|..++|.+.|++.+++||+
T Consensus 310 ----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~ 379 (417)
T d1pv7a_ 310 ----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHH
T ss_pred ----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 466778888899999999999999999999999988 999999865 456799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 008719 182 SAFGALAIAMGISNMLFFIGTP 203 (556)
Q Consensus 182 ~~f~i~~~~~~~~~~~~~~~~~ 203 (556)
.+|++.++..++..++..+..+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 380 GAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 9999888776666555554443
|