Citrus Sinensis ID: 008722

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550------
MATIDRPLLLKLHTPKASKRKILLLILSVVSVMCSATFVAIHCIKAINSNNHWSLHQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQAEAAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIVGDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAYTEGL
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHcccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEcccccEEEEEccccccccccccccEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEccccccccccccEEEEccEEEEccEEEEcccEEEEcccEEEEEccccccccEEEEccccccccccEEEEEccEEEcccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHccccccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccc
matidrplllklhtpkasKRKILLLILSVVSVMCSATFVAIHCIKAinsnnhwsLHQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVkhrinsprgqaALTDCVELLELSVDRITDSMAALKKRrtssnedaHAWLSGVLTnhvtcldgldgsatklMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLrkeiqfpswvtsrdrlllrpsQAEAAKANVVvakdgsgnykTVKEAVasapdnsktRYVIYVKKGTYKENVEVGKKKKNLMIVGDGMDLTIITGSlnvvdgsttfksatiavggdgfiaqdlwiqntagpekHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKiaarkpmskqsnmvtaqgrtdpnqntgtsiqkcdviassdlepvkgsirsylgrpwkeysRTVVMQshigdhidpagwsewsgdfALKTLYygeylnrgpgagtskrvkwpgyhvitdpeeakKFTVAELigggswlkstgvaytegl
matidrplllklhtpkaskrKILLLILSVVSVMCSATFVAIHCIKAINSNNHWSLHQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQaeaakanvvvakdgsgnyKTVKeavasapdnsktryvIYVKkgtykenvevgkkkknlmiVGDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQgrtdpnqntgtsiqkcdviassdlepvkgsirsylgrpwkeYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAEligggswlkstgvaytegl
MATIDRPLLLKLHTPKASKRKilllilsvvsvMCSATFVAIHCIKAINSNNHWSLHQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQaeaakanvvvakDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYkenvevgkkkknLMIVGDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAYTEGL
*******LLLKLHTPKASKRKILLLILSVVSVMCSATFVAIHCIKAINSNNHWSLHQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITD***************AHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLR********ANVVVA*********************KTRYVIYVKKGTYKENVEVGKKKKNLMIVGDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAA*****************************CDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAY****
**********************LLLILSVVSVMCSATFVA****************QFCAKAQDQSSCIAM****************DLLLIFLSKSTSNIQE*******************ALTDCVELLELSVDRITDSM***********EDAHAWLSGVLTNHVTCLDGLDGS***********LMARAANSLAILV**********************SWVTSRDRLLLRPSQAEAAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIVGDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAYTEGL
MATIDRPLLLKLHTPKASKRKILLLILSVVSVMCSATFVAIHCIKAINSNNHWSLHQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAA**********DAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQAEAAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIVGDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAYTEGL
*************TPKASKRKILLLILSVVSVMCSATFVAIHCI****SNNHWSLHQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMARAANSLAILVAISP***************QFPSWVTSRDRLLLRPSQAEAAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIVGDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAYT***
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATIDRPLLLKLHTPKASKRKILLLILSVVSVMCSATFVAIHCIKAINSNNHWSLHQFCAKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCxxxxxxxxxxxxxxxxxxxxxRTSSNEDAHAWLSGVLTNHVTCLDGLDGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQAEAAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIVGDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAYTEGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query556 2.2.26 [Sep-21-2011]
P09607550 Pectinesterase 2.1 OS=Sol N/A no 0.978 0.989 0.601 0.0
Q96575550 Pectinesterase 2.2 OS=Sol N/A no 0.978 0.989 0.598 0.0
P83947545 Pectinesterase/pectineste N/A no 0.956 0.976 0.581 0.0
P14280546 Pectinesterase 1 OS=Solan N/A no 0.971 0.989 0.598 0.0
Q1JPL7557 Pectinesterase/pectineste yes no 0.985 0.983 0.566 0.0
Q96576544 Pectinesterase 3 OS=Solan N/A no 0.973 0.994 0.594 0.0
P83948584 Pectinesterase 3 OS=Citru no no 0.906 0.863 0.482 1e-133
Q9FK05587 Probable pectinesterase/p no no 0.962 0.911 0.439 1e-132
Q43062522 Pectinesterase/pectineste N/A no 0.807 0.860 0.507 1e-131
O04886584 Pectinesterase 1 OS=Citru no no 0.906 0.863 0.482 1e-129
>sp|P09607|PME21_SOLLC Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2 Back     alignment and function desciption
 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/560 (60%), Positives = 404/560 (72%), Gaps = 16/560 (2%)

Query: 1   MATIDRPLLLKLHTPKASKRKILLLILSVVSVMCSATFVAIHCIKAINSNNHWSLHQFCA 60
           MAT  +PLL K H   +    I   IL+ V  +  A F+ +  +         S    C 
Sbjct: 1   MATPQQPLLTKTHKQNSI---ISFKILTFVVTLFVALFLVVFLVAPYQFEIKHS--NLCK 55

Query: 61  KAQDQSSCIAMVSETTSIN-ATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPR 119
            AQD   C++ VS+  S    T+  + + +L  FL  S   +   I V   +K++IN  R
Sbjct: 56  TAQDSQLCLSYVSDLISNEIVTSDSDGLSILKKFLVYSVHQMNNAIPVVRKIKNQINDIR 115

Query: 120 GQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSAT 179
            Q ALTDC+ELL+LSVD + DS+AA+ KR  S + +A +WLSGVLTNHVTCLD LD S T
Sbjct: 116 EQGALTDCLELLDLSVDLVCDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELD-SFT 174

Query: 180 KLM--EPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEI-QFPSWVTSRDRLLLRP 236
           K M     L EL++RA  +LA+L +++  N  V     LR  + + PSWV+SRDR L+  
Sbjct: 175 KAMINGTNLDELISRAKVALAMLASVTTPNDEV-----LRPGLGKMPSWVSSRDRKLMES 229

Query: 237 SQAEAAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNL 296
           S  +   AN VVAKDG+G Y+T+ EAVA+APD SKTRYVIYVK+GTYKENVEV  +K NL
Sbjct: 230 SGKDIG-ANAVVAKDGTGKYRTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVSSRKMNL 288

Query: 297 MIVGDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRV 356
           MI+GDGM  TIITGSLNVVDGSTTF SAT+A  G GFI QD+ IQNTAGP KHQAVALRV
Sbjct: 289 MIIGDGMYATIITGSLNVVDGSTTFHSATLAAVGKGFILQDICIQNTAGPAKHQAVALRV 348

Query: 357 SADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMS 416
            AD+SVINRCRIDAYQDTLYAH+ RQFYRD Y+TGT+DFIFGNAAVV Q C++ ARKP  
Sbjct: 349 GADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGK 408

Query: 417 KQSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSH 476
            Q NMVTAQGRTDPNQ TGTSIQ CD+IAS DL+PV     +YLGRPWK+YSRTVVM+S+
Sbjct: 409 YQQNMVTAQGRTDPNQATGTSIQFCDIIASPDLKPVVKEFPTYLGRPWKKYSRTVVMESY 468

Query: 477 IGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVA 536
           +G  IDP+GW+EW GDFALKTLYYGE++N GPGAGTSKRVKWPGYHVITDP EA  FTVA
Sbjct: 469 LGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVA 528

Query: 537 ELIGGGSWLKSTGVAYTEGL 556
           +LI GGSWL+ST VAY +GL
Sbjct: 529 KLIQGGSWLRSTDVAYVDGL 548
Pectinesterase may play a role in cell wall metabolism during fruit growth and development prior to ripening and may be required for preparing cell walls for softening by polygalacturonase during fruit ripening.
Solanum lycopersicum (taxid: 4081)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q96575|PME22_SOLLC Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1 Back     alignment and function description
>sp|P83947|PME1_FICPW Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 Back     alignment and function description
>sp|P14280|PME1_SOLLC Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5 Back     alignment and function description
>sp|Q1JPL7|PME18_ARATH Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3 Back     alignment and function description
>sp|Q96576|PME3_SOLLC Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query556
255554971547 Pectinesterase precursor, putative [Rici 0.982 0.998 0.682 0.0
224116094549 predicted protein [Populus trichocarpa] 0.985 0.998 0.691 0.0
225444369528 PREDICTED: pectinesterase 2.2 [Vitis vin 0.949 1.0 0.651 0.0
20269071554 pectin methylesterase [Sesbania rostrata 0.971 0.974 0.623 0.0
449433936555 PREDICTED: pectinesterase/pectinesterase 0.992 0.994 0.635 0.0
449479423555 PREDICTED: pectinesterase/pectinesterase 0.992 0.994 0.633 0.0
356495803594 PREDICTED: LOW QUALITY PROTEIN: pectines 0.973 0.910 0.621 0.0
388512421554 unknown [Lotus japonicus] 0.983 0.987 0.614 0.0
357504821555 Pectinesterase [Medicago truncatula] gi| 0.971 0.972 0.613 0.0
357504799554 Pectinesterase [Medicago truncatula] gi| 0.971 0.974 0.617 0.0
>gi|255554971|ref|XP_002518523.1| Pectinesterase precursor, putative [Ricinus communis] gi|223542368|gb|EEF43910.1| Pectinesterase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/557 (68%), Positives = 440/557 (78%), Gaps = 11/557 (1%)

Query: 1   MATIDRPLLLKLHTPKASKRKI-LLLILSVVSVMCSATFVAIHCIKAINSNNHWSLHQFC 59
           MAT  +PLL  L   KAS  K+ L L+LS+ +++ SA  + +H    I  ++   +   C
Sbjct: 1   MATALQPLLDSL---KASPHKLTLYLVLSIAAILSSAALLTLH-FNHITLSHPQIIQTLC 56

Query: 60  AKAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPR 119
            +A D++SC AMVSE  + N T K+N V LL + L+KSTS+IQ  I  ANHV+  IN P 
Sbjct: 57  DRATDEASCQAMVSEIAT-NTTMKLNHVKLLQVLLTKSTSHIQNAILEANHVRIMINDPV 115

Query: 120 GQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSAT 179
            QAAL DCV+L+ELS+D+I +S+ AL    T S+ DAH+WLS VLTNHVTCLDGL G A 
Sbjct: 116 NQAALVDCVDLMELSLDKIKNSVLALDNVTTDSHADAHSWLSTVLTNHVTCLDGLKGLAR 175

Query: 180 KLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQA 239
             MEP L +++ RA  SLA++VAISP   ++I          FPSWVTS+DR LL  S  
Sbjct: 176 STMEPGLKDIITRARTSLAMVVAISPAKNDLISPL----NGDFPSWVTSKDRKLLE-SSG 230

Query: 240 EAAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIV 299
           +   A+V+VAKDGSG YKTVKEAVA+AP+N KTRYVIYVKKGTYKENVE+G  KKN+M+V
Sbjct: 231 KNINADVIVAKDGSGKYKTVKEAVAAAPNNGKTRYVIYVKKGTYKENVEIGNSKKNIMLV 290

Query: 300 GDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSAD 359
           GD MD TIITGSLNVVDGSTTF SAT+A  GDGFIAQD+W QNTAGP+KHQAVALRV +D
Sbjct: 291 GDSMDSTIITGSLNVVDGSTTFNSATVAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGSD 350

Query: 360 QSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQS 419
           QSVINRCRIDAYQDTLYAH++R FYRD +ITGTVDFIFGNAA V QNCKI ARKPM+ Q 
Sbjct: 351 QSVINRCRIDAYQDTLYAHSDRHFYRDSFITGTVDFIFGNAAAVFQNCKIVARKPMAGQK 410

Query: 420 NMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGD 479
           NMVTAQGRTDPNQNTGTSIQKCDVIASSDL+PVKGS  SYLGRPWKEYSRTVVMQS+IGD
Sbjct: 411 NMVTAQGRTDPNQNTGTSIQKCDVIASSDLQPVKGSFPSYLGRPWKEYSRTVVMQSNIGD 470

Query: 480 HIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELI 539
           HIDPAGWS W G+FALKTLYYGEY+N+G GAGTSKRVKWPGYHVIT   EAKKFTVAELI
Sbjct: 471 HIDPAGWSIWDGEFALKTLYYGEYMNKGAGAGTSKRVKWPGYHVITSATEAKKFTVAELI 530

Query: 540 GGGSWLKSTGVAYTEGL 556
            GG+WLKSTGVA+TEGL
Sbjct: 531 QGGAWLKSTGVAFTEGL 547

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116094|ref|XP_002317208.1| predicted protein [Populus trichocarpa] gi|222860273|gb|EEE97820.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225444369|ref|XP_002266980.1| PREDICTED: pectinesterase 2.2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|20269071|emb|CAD29733.1| pectin methylesterase [Sesbania rostrata] Back     alignment and taxonomy information
>gi|449433936|ref|XP_004134752.1| PREDICTED: pectinesterase/pectinesterase inhibitor-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479423|ref|XP_004155595.1| PREDICTED: pectinesterase/pectinesterase inhibitor-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495803|ref|XP_003516762.1| PREDICTED: LOW QUALITY PROTEIN: pectinesterase/pectinesterase inhibitor 18-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|388512421|gb|AFK44272.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357504821|ref|XP_003622699.1| Pectinesterase [Medicago truncatula] gi|87241556|gb|ABD33414.1| Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] gi|355497714|gb|AES78917.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357504799|ref|XP_003622688.1| Pectinesterase [Medicago truncatula] gi|355497703|gb|AES78906.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96576PME3_SOLLC3, ., 1, ., 1, ., 1, 10.59420.97300.9944N/Ano
P14280PME1_SOLLC3, ., 1, ., 1, ., 1, 10.59820.97120.9890N/Ano
Q96575PME22_SOLLC3, ., 1, ., 1, ., 1, 10.59820.97840.9890N/Ano
P09607PME21_SOLLC3, ., 1, ., 1, ., 1, 10.60170.97840.9890N/Ano
Q43062PME_PRUPE3, ., 1, ., 1, ., 1, 10.50740.80750.8601N/Ano
Q1JPL7PME18_ARATH3, ., 2, ., 2, ., 2, 20.56630.98560.9838yesno
P83947PME1_FICPW3, ., 1, ., 1, ., 1, 10.58180.95680.9761N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.991
3rd Layer3.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query556
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 0.0
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 0.0
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-177
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-174
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-170
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-168
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-167
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-167
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-166
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-163
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-162
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-161
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-150
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-143
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-139
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-136
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-135
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-135
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-124
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-94
PLN02432293 PLN02432, PLN02432, putative pectinesterase 6e-69
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 8e-68
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 8e-62
PLN02773317 PLN02773, PLN02773, pectinesterase 3e-61
PLN02671359 PLN02671, PLN02671, pectinesterase 5e-58
PLN02304379 PLN02304, PLN02304, probable pectinesterase 3e-56
PLN02497331 PLN02497, PLN02497, probable pectinesterase 3e-50
PLN02634359 PLN02634, PLN02634, probable pectinesterase 5e-46
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 3e-44
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 5e-40
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-39
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 2e-24
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 2e-21
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 6e-20
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 1e-15
TIGR04247377 TIGR04247, NosD_copper_fam, nitrous oxide reductas 2e-05
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  900 bits (2327), Expect = 0.0
 Identities = 383/556 (68%), Positives = 447/556 (80%), Gaps = 8/556 (1%)

Query: 1   MATIDRPLLLKLHTPKASKRKILLLILSVVSVMCSATFVAIHCIKAINSNNHWSLHQFCA 60
           M+T ++PLL    +  +S  K L L+LS V+++ SA       I   +S+    L   C 
Sbjct: 1   MSTSNQPLLSSPKS--SSHHKTLCLVLSFVAILSSAALFTAPLISTNSSSPPSLLQTLCD 58

Query: 61  KAQDQSSCIAMVSETTSINATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRG 120
           +A DQ SC AMVSE  + N   K+N VDLL + L +ST ++Q TIE+A+ ++ RIN PR 
Sbjct: 59  RAHDQDSCQAMVSEIAT-NTVMKLNRVDLLQVLLKESTPHLQNTIEMASEIRIRINDPRD 117

Query: 121 QAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAWLSGVLTNHVTCLDGLDGSATK 180
           +AAL DCVEL++LS DRI DS+ AL    + S+ DAH WLS VLTNHVTCLDG++G + +
Sbjct: 118 KAALADCVELMDLSKDRIKDSVEALGNVTSKSHADAHTWLSSVLTNHVTCLDGINGPSRQ 177

Query: 181 LMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQAE 240
            M+P L +L++RA  SLAILV++SP   +++          FPSW+TS+DR LL  S  +
Sbjct: 178 SMKPGLKDLISRARTSLAILVSVSPAKEDLLMPLSGD----FPSWLTSKDRKLLE-SSPK 232

Query: 241 AAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIVG 300
             KANVVVAKDGSG YKTVKEAVASAPDNSKTRYVIYVKKGTYKENVE+GKKKKNLM+VG
Sbjct: 233 NIKANVVVAKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNLMLVG 292

Query: 301 DGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQ 360
           DGMD TIITGSLNV+DGSTTF+SAT+A  GDGFIAQD+W QNTAGPEKHQAVALRVSADQ
Sbjct: 293 DGMDSTIITGSLNVIDGSTTFRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQ 352

Query: 361 SVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSN 420
           +VINRCRIDAYQDTLYAH+ RQFYRD YITGTVDFIFGNAAVV QNCKI ARKPM+ Q N
Sbjct: 353 AVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGNAAVVFQNCKIVARKPMAGQKN 412

Query: 421 MVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDH 480
           MVTAQGRTDPNQNTG SIQKCD+IASSDLEPVKGS ++YLGRPWKEYSRTVVMQS+I DH
Sbjct: 413 MVTAQGRTDPNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDDH 472

Query: 481 IDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIG 540
           IDPAGWS W G+FAL TLYYGEY NRGPGAGTSKRV WPG+HVITDP+EA+KFTVAELI 
Sbjct: 473 IDPAGWSPWDGEFALSTLYYGEYANRGPGAGTSKRVNWPGFHVITDPKEARKFTVAELIQ 532

Query: 541 GGSWLKSTGVAYTEGL 556
           GG+WLKSTGV++TEGL
Sbjct: 533 GGAWLKSTGVSFTEGL 548

Length = 548
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|234521 TIGR04247, NosD_copper_fam, nitrous oxide reductase family maturation protein NosD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 556
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02634359 probable pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.95
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.95
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.92
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.41
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.76
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.65
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.4
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.05
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.64
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.1
KOG1777 625 consensus Putative Zn-finger protein [General func 96.91
PLN02218431 polygalacturonase ADPG 96.71
PLN02793443 Probable polygalacturonase 96.62
PLN03003456 Probable polygalacturonase At3g15720 96.58
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.23
PLN03010409 polygalacturonase 96.11
PLN02682369 pectinesterase family protein 95.78
PLN02671359 pectinesterase 95.71
PLN02155394 polygalacturonase 95.66
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.47
PRK10531422 acyl-CoA thioesterase; Provisional 95.28
PLN02634359 probable pectinesterase 95.05
PLN02480343 Probable pectinesterase 94.92
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.67
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.66
PLN02773317 pectinesterase 94.62
smart00656190 Amb_all Amb_all domain. 94.58
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.54
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 94.23
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.22
PLN02176340 putative pectinesterase 94.16
PLN02301548 pectinesterase/pectinesterase inhibitor 94.11
PLN02217670 probable pectinesterase/pectinesterase inhibitor 93.93
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.92
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 93.81
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.71
PLN02432293 putative pectinesterase 93.6
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 93.56
PLN02170529 probable pectinesterase/pectinesterase inhibitor 93.54
PLN02488509 probable pectinesterase/pectinesterase inhibitor 93.5
PLN02916502 pectinesterase family protein 93.28
PLN02304379 probable pectinesterase 93.25
PLN02197588 pectinesterase 93.06
PLN02497331 probable pectinesterase 93.04
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 92.98
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 92.94
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 92.88
PLN02416541 probable pectinesterase/pectinesterase inhibitor 92.79
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 92.35
PLN02506537 putative pectinesterase/pectinesterase inhibitor 91.92
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 91.61
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 91.58
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 91.56
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 90.99
PLN02665366 pectinesterase family protein 90.54
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 90.18
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.17
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 89.39
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 88.41
PLN02314586 pectinesterase 88.16
PLN02201520 probable pectinesterase/pectinesterase inhibitor 88.06
PLN02188404 polygalacturonase/glycoside hydrolase family prote 87.51
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 81.32
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=2.9e-142  Score=1158.29  Aligned_cols=547  Identities=70%  Similarity=1.092  Sum_probs=510.0

Q ss_pred             CCCCCcccccccCCCC-CccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHhccCCCCChhhHHHHhhhccCCC
Q 008722            1 MATIDRPLLLKLHTPK-ASKRKILLLILSVVSVMCSATFVAIHCIKAINSNNHWSLHQFCAKAQDQSSCIAMVSETTSIN   79 (556)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~~~k~~~~~lS~~~il~~~~~v~~~~~~~~~~~~~~~I~~~C~~T~yp~~C~~sL~~~~~s~   79 (556)
                      |++++||||   ++|| .+.+|++|++|||++||.+++|++..+.+.++......|+.+|+.|+||++|+++|++.+...
T Consensus         1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iks~C~~T~YP~~C~ssLs~~a~~~   77 (548)
T PLN02301          1 MSTSNQPLL---SSPKSSSHHKTLCLVLSFVAILSSAALFTAPLISTNSSSPPSLLQTLCDRAHDQDSCQAMVSEIATNT   77 (548)
T ss_pred             CCccccccc---cCcccccccceeehhHHHHHHHHHHHHHhhhhhhcCCCCchHHHHHHhcCCCChHHHHHHHhhccCcc
Confidence            899999999   9999 778889999999999999999999999888766677899999999999999999999887532


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 008722           80 ATTKMNEVDLLLIFLSKSTSNIQETIEVANHVKHRINSPRGQAALTDCVELLELSVDRITDSMAALKKRRTSSNEDAHAW  159 (556)
Q Consensus        80 ~~~~~d~~~Ll~~al~~a~~~a~~a~~~i~~l~~~~~~~~~k~aL~DC~ely~~Avd~L~~S~~al~~~~~~~~~d~~tw  159 (556)
                      . .+.+|.+|++++|++++.++..+...++++..+..++++++||+||+|+|++++|+|++|+++|.....++++|++||
T Consensus        78 ~-~~~~p~~L~~aaL~vsl~~a~~a~~~vs~l~~~~~~~~~~aAL~DC~ELl~davd~L~~Sl~~l~~~~~~~~~Dv~TW  156 (548)
T PLN02301         78 V-MKLNRVDLLQVLLKESTPHLQNTIEMASEIRIRINDPRDKAALADCVELMDLSKDRIKDSVEALGNVTSKSHADAHTW  156 (548)
T ss_pred             c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHH
Confidence            1 125899999999999999999999999998666788999999999999999999999999999986544568999999


Q ss_pred             HHHHHhhhhhhhhhcCCCCcccchHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccCCCcccccccccccCcccc
Q 008722          160 LSGVLTNHVTCLDGLDGSATKLMEPRLVELMARAANSLAILVAISPYNTNVIQQYYLRKEIQFPSWVTSRDRLLLRPSQA  239 (556)
Q Consensus       160 LSAAlT~~~TC~Dgf~~~~~~~l~~~~~~l~~L~snaLAi~~~l~~~~~~~~~~~~~~~~~~~p~w~~~~~r~~~~~~~~  239 (556)
                      |||||||++||+|||++..++.|...+.++.+|+||+|||++.+.+...+. .++   +.++||+|++.+|||||+.. +
T Consensus       157 LSAALT~q~TC~DGF~~~~~~~~~~~l~n~~qL~SNsLAiv~~l~~~~~~~-~~~---~~~~~p~w~~~~~r~ll~~~-~  231 (548)
T PLN02301        157 LSSVLTNHVTCLDGINGPSRQSMKPGLKDLISRARTSLAILVSVSPAKEDL-LMP---LSGDFPSWLTSKDRKLLESS-P  231 (548)
T ss_pred             HHHHhcchhhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHhhcccccccccc-ccc---ccCCCCCCcCccchhhhhcc-c
Confidence            999999999999999877677899999999999999999999988654221 233   66899999999999999876 4


Q ss_pred             cCCcceEEEcCCCCCCcccHHHHHHhCCCCCCceEEEEEecceeeeeEEEeecCCCeEEeecCcCceEEEcCccccCCCC
Q 008722          240 EAAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIVGDGMDLTIITGSLNVVDGST  319 (556)
Q Consensus       240 ~~~~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~tiI~~~~~~~~g~~  319 (556)
                      ..++++++|++||+|+|+|||+||+++|++++.|++|+|+||+|+|+|.|++.|+||+|+|+|+++|||+|+.+..+|++
T Consensus       232 ~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~  311 (548)
T PLN02301        232 KNIKANVVVAKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGST  311 (548)
T ss_pred             ccCCccEEECCCCCCCcccHHHHHHhhhhcCCceEEEEEeCceeeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCC
Confidence            56789999999999999999999999999888999999999999999999999999999999999999999998889999


Q ss_pred             ccceeEEEEEcCcEEEEeeEEEeCCCCCccceeeeeecccceEEEEEEEeeccccccccccceeeeccEEecccceeecc
Q 008722          320 TFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGN  399 (556)
Q Consensus       320 t~~satv~v~~~~~~~~~lti~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTl~~~~~r~~~~~c~I~G~vDfIfG~  399 (556)
                      |+++|||.|.+++|+++||+|+|++|+.++|||||++++|+++||||+|+|||||||+|.+||||++|||+|+||||||+
T Consensus       312 T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~  391 (548)
T PLN02301        312 TFRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGN  391 (548)
T ss_pred             ceeeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEeeeEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCCCCCCccCCccEEeeccccccCcEEEEecCCCC
Q 008722          400 AAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGD  479 (556)
Q Consensus       400 ~~a~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v~~~s~~~~  479 (556)
                      |+++||+|+|+++++..++.++||||||+++++++||||+||+|++++++.+..+..++||||||++|+|||||+|+|++
T Consensus       392 a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~  471 (548)
T PLN02301        392 AAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDD  471 (548)
T ss_pred             ceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCccccccccccceeeecCCCCCceEEEEecccCC
Confidence            99999999999998877788999999999999999999999999999887766656689999999999999999999999


Q ss_pred             CcCCCCCCCCCCcCCCcceEEEEeccccCCCCCCCcccCCCccccCCHHHHhcchhhccccCCCCcCCCCCccCCCC
Q 008722          480 HIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAYTEGL  556 (556)
Q Consensus       480 ~i~p~Gw~~w~~~~~~~~~~f~Ey~n~Gpga~~s~R~~w~~~~~l~~~~ea~~yt~~~~~~g~~W~~~~~~~~~~~~  556 (556)
                      +|+|+||.+|++++.++++||+||+|+||||++++||+|++++++++++||.+|++.+||+|+.|+|.+||||..||
T Consensus       472 ~I~p~GW~~W~~~~~~~t~~yaEy~n~GpGa~~s~Rv~W~~~~~~~~~~eA~~ft~~~fi~g~~Wl~~tgv~~~~gl  548 (548)
T PLN02301        472 HIDPAGWSPWDGEFALSTLYYGEYANRGPGAGTSKRVNWPGFHVITDPKEARKFTVAELIQGGAWLKSTGVSFTEGL  548 (548)
T ss_pred             eecccccCccCCCCCCCceEEEEeccccCCCCcCCCccCccccccCCHHHHHhhhHHheeCCCCcCCCCCCccCCCC
Confidence            99999999999988899999999999999999999999999988778999999999999999999999999999997

>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query556
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-136
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-110
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 8e-22
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 2e-21
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 1e-20
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 6e-16
3grh_A422 Crystal Structure Of Escherichia Coli Ybhc Length = 4e-06
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  483 bits (1243), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/306 (74%), Positives = 255/306 (83%)
Query: 251 DGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYXXXXXXXXXXXXLMIVGDGMDLTIITG 310
           DG+G+Y+T+ EAVA+APD SKTRYVIYVK+GTY            LMIVGDGM  T ITG
Sbjct: 10  DGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITG 69
Query: 311 SLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDA 370
           SLNVVDGSTTF+SAT+A  G GFI QD+ IQNTAGP K QAVALRV AD SVINRCRIDA
Sbjct: 70  SLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDA 129
Query: 371 YQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDP 430
           YQDTLYAH+ RQFYRD Y+TGTVDFIFGNAAVV Q C++ ARKP   Q NMVTAQGRTDP
Sbjct: 130 YQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDP 189
Query: 431 NQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWS 490
           NQ TGTSIQ C++IASSDLEPV     +YLGRPWKEYSRTVVM+S++G  I+PAGW+EW 
Sbjct: 190 NQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWD 249
Query: 491 GDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGV 550
           GDFALKTLYYGE++N GPGAGTSKRVKWPGYHVITDP +A  FTVA+LI GGSWL+STGV
Sbjct: 250 GDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGV 309
Query: 551 AYTEGL 556
           AY +GL
Sbjct: 310 AYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc Length = 422 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query556
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 0.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 0.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-142
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-140
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-119
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 5e-22
1x91_A153 Invertase/pectin methylesterase inhibitor family p 4e-20
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 8e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-11
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  536 bits (1383), Expect = 0.0
 Identities = 241/314 (76%), Positives = 269/314 (85%)

Query: 243 KANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIVGDG 302
            AN VVA+DG+G+Y+T+ EAVA+APD SKTRYVIYVK+GTYKENVEV   K NLMIVGDG
Sbjct: 2   IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDG 61

Query: 303 MDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSV 362
           M  T ITGSLNVVDGSTTF+SAT+A  G GFI QD+ IQNTAGP K QAVALRV AD SV
Sbjct: 62  MYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSV 121

Query: 363 INRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMV 422
           INRCRIDAYQDTLYAH+ RQFYRD Y+TGTVDFIFGNAAVV Q C++ ARKP   Q NMV
Sbjct: 122 INRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMV 181

Query: 423 TAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHID 482
           TAQGRTDPNQ TGTSIQ C++IASSDLEPV     +YLGRPWKEYSRTVVM+S++G  I+
Sbjct: 182 TAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN 241

Query: 483 PAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGG 542
           PAGW+EW GDFALKTLYYGE++N GPGAGTSKRVKWPGYHVITDP +A  FTVA+LI GG
Sbjct: 242 PAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGG 301

Query: 543 SWLKSTGVAYTEGL 556
           SWL+STGVAY +GL
Sbjct: 302 SWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query556
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.97
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.96
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.62
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.44
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.66
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.08
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.89
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.7
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.35
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.29
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.28
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.25
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.22
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.21
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.15
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.02
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.98
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.89
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.88
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 96.75
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.69
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.53
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.51
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.45
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.93
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.86
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.62
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.51
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.33
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.31
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.25
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.21
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.16
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 94.88
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.87
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 93.42
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 93.21
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 89.93
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 88.7
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 85.93
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 84.94
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 84.47
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 83.91
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 83.53
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 83.11
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 82.43
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 81.13
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 80.69
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2.6e-92  Score=728.21  Aligned_cols=314  Identities=77%  Similarity=1.209  Sum_probs=300.3

Q ss_pred             cceEEEcCCCCCCcccHHHHHHhCCCCCCceEEEEEecceeeeeEEEeecCCCeEEeecCcCceEEEcCccccCCCCccc
Q 008722          243 KANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIVGDGMDLTIITGSLNVVDGSTTFK  322 (556)
Q Consensus       243 ~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~tiI~~~~~~~~g~~t~~  322 (556)
                      +++++|++||+|+|+|||+||++||++++.|++|+|+||+|+|+|.|++.|++|||+|++.++|+|+++.+..+|.+|+.
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~   81 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFR   81 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGG
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccc
Confidence            57899999999999999999999999989999999999999999999988899999999999999999988888899999


Q ss_pred             eeEEEEEcCcEEEEeeEEEeCCCCCccceeeeeecccceEEEEEEEeeccccccccccceeeeccEEecccceeeccCce
Q 008722          323 SATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAV  402 (556)
Q Consensus       323 satv~v~~~~~~~~~lti~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTl~~~~~r~~~~~c~I~G~vDfIfG~~~a  402 (556)
                      ++||.|.+++|+++||||+|++++.++||+||++.+|+++|+||+|+|+|||||++.+||||++|+|+|+||||||++.+
T Consensus        82 satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~a  161 (317)
T 1xg2_A           82 SATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAV  161 (317)
T ss_dssp             GCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEE
T ss_pred             eeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceE
Confidence            99999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeeEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCCCCCCccCCccEEeeccccccCcEEEEecCCCCCcC
Q 008722          403 VLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHID  482 (556)
Q Consensus       403 ~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v~~~s~~~~~i~  482 (556)
                      +||+|+|+++++..++.++||||+|+++++++||||+||+|++++++.++....++||||||++|+||||++|+|+++|+
T Consensus       162 vf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~  241 (317)
T 1xg2_A          162 VFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN  241 (317)
T ss_dssp             EEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBC
T ss_pred             EEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCccc
Confidence            99999999998776788999999999999999999999999999876554445689999999999999999999999999


Q ss_pred             CCCCCCCCCcCCCcceEEEEeccccCCCCCCCcccCCCccccCCHHHHhcchhhccccCCCCcCCCCCccCCCC
Q 008722          483 PAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAYTEGL  556 (556)
Q Consensus       483 p~Gw~~w~~~~~~~~~~f~Ey~n~Gpga~~s~R~~w~~~~~l~~~~ea~~yt~~~~~~g~~W~~~~~~~~~~~~  556 (556)
                      |+||.+|++++++++++|+||+|+||||++++||+|+++++|++++||++|++.+||+|+.|+|.++|||..||
T Consensus       242 p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~  315 (317)
T 1xg2_A          242 PAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL  315 (317)
T ss_dssp             TTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSS
T ss_pred             ccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccc
Confidence            99999999988889999999999999999999999999888877899999999999999889999999999997
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 556
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-163
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 1e-104
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 1e-17
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 4e-16
d1ofla_ 481 b.80.1.4 (A:) Chondroitinase B {Pedobacter heparin 7e-06
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 2e-05
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  465 bits (1197), Expect = e-163
 Identities = 206/319 (64%), Positives = 242/319 (75%)

Query: 238 QAEAAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLM 297
           ++     NVVVA DGSG+YKTV EAVA+AP++SKTRYVI +K G Y+ENV+V KKKKN+M
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 298 IVGDGMDLTIITGSLNVVDGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVS 357
            +GDG   TIIT S NV DGSTTF SAT+A  G GF+A+D+  QNTAG  KHQAVALRV 
Sbjct: 61  FLGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVG 120

Query: 358 ADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNAAVVLQNCKIAARKPMSK 417
           +D S   RC I AYQD+LY H+NRQF+ +C+I GTVDFIFGNAAVVLQ+C I AR+P S 
Sbjct: 121 SDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG 180

Query: 418 QSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHI 477
           Q NMVTAQGRTDPNQNTG  IQK  + A+SDL+PV+ S  +YLGRPWKEYSRTVVMQS I
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 478 GDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAE 537
            + I+PAGW  W G+FAL TLYYGEY N G GA TS RV W G+ VIT   EA+ FT   
Sbjct: 241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGS 300

Query: 538 LIGGGSWLKSTGVAYTEGL 556
            I GGSWLK+T   ++ GL
Sbjct: 301 FIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Length = 481 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query556
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.95
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.99
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.76
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.01
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.05
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 96.97
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.34
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.12
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 95.99
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.83
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.81
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.66
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.64
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.5
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 94.74
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 93.64
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 93.41
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 92.76
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 87.49
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 83.46
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 80.93
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.2e-95  Score=747.89  Aligned_cols=316  Identities=65%  Similarity=1.028  Sum_probs=303.4

Q ss_pred             CCcceEEEcCCCCCCcccHHHHHHhCCCCCCceEEEEEecceeeeeEEEeecCCCeEEeecCcCceEEEcCccccCCCCc
Q 008722          241 AAKANVVVAKDGSGNYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEVGKKKKNLMIVGDGMDLTIITGSLNVVDGSTT  320 (556)
Q Consensus       241 ~~~~~~~V~~dg~g~f~TIq~Ai~aap~~~~~~~~I~I~~G~Y~E~v~I~~~~~~Itl~G~g~~~tiI~~~~~~~~g~~t  320 (556)
                      .++|+++|++||+|||+|||+||+++|.+++.|++|+|+||+|+|+|+|+++|++|||+|+|++.|+|+++.+..+|.+|
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t   83 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTT   83 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999988888889


Q ss_pred             cceeEEEEEcCcEEEEeeEEEeCCCCCccceeeeeecccceEEEEEEEeeccccccccccceeeeccEEecccceeeccC
Q 008722          321 FKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCYITGTVDFIFGNA  400 (556)
Q Consensus       321 ~~satv~v~~~~~~~~~lti~Nt~g~~~~qAvAl~~~~d~~~~~~c~~~g~QDTl~~~~~r~~~~~c~I~G~vDfIfG~~  400 (556)
                      ++++||.|.+++|+++||||+|++++.++|||||++.+||+.|+||+|+|||||||++.|||||++|+|+|+||||||++
T Consensus        84 ~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~  163 (319)
T d1gq8a_          84 FNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNA  163 (319)
T ss_dssp             GGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESC
T ss_pred             ccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCc
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEeeeEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCCCCCCccCCccEEeeccccccCcEEEEecCCCCC
Q 008722          401 AVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCDVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDH  480 (556)
Q Consensus       401 ~a~fe~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~~v~~~s~~~~~  480 (556)
                      +++||+|+|+++++..++.++||||+|+++.+++||||+||+|++++++.+.....++||||||++++||||++|+|++|
T Consensus       164 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~  243 (319)
T d1gq8a_         164 AVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV  243 (319)
T ss_dssp             EEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTT
T ss_pred             eeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccc
Confidence            99999999999988777889999999999999999999999999999876665567899999999999999999999999


Q ss_pred             cCCCCCCCCCCcCCCcceEEEEeccccCCCCCCCcccCCCccccCCHHHHhcchhhccccCCCCcCCCCCccCCCC
Q 008722          481 IDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAYTEGL  556 (556)
Q Consensus       481 i~p~Gw~~w~~~~~~~~~~f~Ey~n~Gpga~~s~R~~w~~~~~l~~~~ea~~yt~~~~~~g~~W~~~~~~~~~~~~  556 (556)
                      |+|+||.+|++.+.+++++|+||+|+|||+++++||+|++++.+++++||++|+..+||+|++|+|.++|||..||
T Consensus       244 I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             BCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999988889999999999999999999999998776669999999999999999889999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure