Citrus Sinensis ID: 008761

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
MESKEMNLNKECSGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTAAVEPIDASECGPDVPGISDRRTAGPKKIELRIGESSAFFTYVKSNMPRDSSPRIVNVDDSAAQNVRMEEKCQPCCQQVVSDTRIHENGEAWENYSQGEDFRSSSSVPDSLSMERSSTPPTDFPQNRNFKDEKFFQPQMPPTRNEPPQATYQYYMSGAMNQVMLPSSSAQMYQKNLHELQNHSMLPQYNHLPQCVPHVNGMASFPYYPINMCLQPGQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPSSVDYDEDEDEEEEMASRDSSPDNDTSGN
cccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccHHHHHcccccccccccccc
***************************IDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVA********************************STHQETESVPVATATVVASTSGTAAVEPIDASECGPDVPGI**************IGESSAFFTYV*************************************************************************************************************YY****************************SMLPQYNHLPQCVPHVNGMASFPYYPINMCLQPGQV**************************ALIKFRQKRKERCFDKKIRYVNRKRLAER*PRVRGQFVRKVNGVN************************************
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MESKEMNLNKECSGAGIGNSKSSGDGFIDRSKVRILLCDNDSNSSDAVFSLLVKCSYQVTSVRSPRQVIDALNAEGSDIDLILAEVDLPMTKGLKMLKYITRDKELQRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILSYDFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEIGMSTHQETESVPVATATVVASTSGTAAVEPIDASECGPDVPGISDRRTAGPKKIELRIGESSAFFTYVKSNMPRDSSPRIVNVDDSAAQNVRMEEKCQPCCQQVVSDTRIHENGEAWENYSQGEDFRSSSSVPDSLSMERSSTPPTDFPQNRNFKDEKFFQPQMPPTRNEPPQATYQYYMSGAMNQVMLPSSSAQMYQKNLHELQNHSMLPQYNHLPQCVPHVNGMASFPYYPINMCLQPGQVSANSWPSYGNSPSTEVKMNKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPSSVDYDEDEDEEEEMASRDSSPDNDTSGN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Two-component response regulator-like APRR1 Controls photoperiodic flowering response. Component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. Positive regulator of CCA1 and LHY expression.probableQ9LKL2
Two-component response regulator-like PRR1 Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.probableQ689G9

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1K66, chain A
Confidence level:very confident
Coverage over the Query: 29-155
View the alignment between query and template
View the model in PyMOL
Template: 1A2O, chain A
Confidence level:confident
Coverage over the Query: 30-185,198-246
View the alignment between query and template
View the model in PyMOL
Template: 3OGL, chain Q
Confidence level:probable
Coverage over the Query: 468-478
View the alignment between query and template
View the model in PyMOL