Citrus Sinensis ID: 008792
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M390 | 570 | Peptide transporter PTR1 | yes | no | 0.994 | 0.964 | 0.695 | 0.0 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.985 | 0.956 | 0.680 | 0.0 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.981 | 0.928 | 0.601 | 0.0 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.958 | 0.898 | 0.548 | 1e-179 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.943 | 0.957 | 0.534 | 1e-164 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.952 | 0.884 | 0.453 | 1e-128 | |
| Q8VZR7 | 583 | Probable peptide/nitrate | no | no | 0.960 | 0.910 | 0.413 | 1e-127 | |
| Q9FNL7 | 582 | Peptide transporter PTR3- | no | no | 0.985 | 0.936 | 0.407 | 1e-124 | |
| Q9FNL8 | 586 | Peptide transporter PTR3- | no | no | 0.980 | 0.924 | 0.410 | 1e-122 | |
| Q8GXN2 | 589 | Nitrate transporter 1.8 O | no | no | 0.978 | 0.918 | 0.412 | 1e-119 |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/568 (69%), Positives = 452/568 (79%), Gaps = 18/568 (3%)
Query: 4 EEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQ 63
E+D++T DGT+D PA K++TG WKAC +ILGNECCERLAYYG+ TNLVNYL LNQ
Sbjct: 3 EKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQ 62
Query: 64 GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGL 123
GN A NNVTNWSGTCY+ PLIGAF+ADAYLGRYWTIA+F IYV GMT+LT+SASV GL
Sbjct: 63 GNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGL 122
Query: 124 KPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSF 183
KP + CHP Q AVFFV LY+IALGTGGIKPCVSSFGADQFD+ DE EK KKSSF
Sbjct: 123 KPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSF 182
Query: 184 FNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGG 243
FNWFYFSIN+GAL+AA+ LVWIQ NVGWGWGFG+P VAM IAV FF GSR YR Q+PGG
Sbjct: 183 FNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGG 242
Query: 244 SPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVET 286
SPLTRI Q SLL+ETAD E + GS KL HT L F DKAAVE+
Sbjct: 243 SPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302
Query: 287 PSDCVK-GSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345
SD +K G VN WRLC+VTQVEE KSII LLP+WA GIVF+ VYSQM T+FVLQGNTMD
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQ 362
Query: 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISI 405
H+ +FEIPSASLSLFDT+SV+FW P+YD+ I+PLARKFT ++ GFTQLQR+ IGLV+SI
Sbjct: 363 HMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSI 422
Query: 406 FAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ 465
FAM+TAG LE+VRL VK HN Y+ K I MSIFWQ+PQY +IGCAEVFTFIGQLEFFY+Q
Sbjct: 423 FAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQ 482
Query: 466 APDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLL 525
APDAMRSLCSALSLTT ALGNYLST+LV +V + ++GKPGWIPDNLN G+L YFF+LL
Sbjct: 483 APDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLL 542
Query: 526 ALLSVLNLGVYLMVARCYTYKKLVVSSH 553
A LS LN VYL +++ Y YKK V +H
Sbjct: 543 ATLSFLNFLVYLWISKRYKYKKAVGRAH 570
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/566 (68%), Positives = 451/566 (79%), Gaps = 21/566 (3%)
Query: 1 MAAEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFE 60
M ++DI+T DGT+D KPA K +TGTWKAC +ILG ECCERLAYYG++TNL+NYL +
Sbjct: 1 MEDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQ 60
Query: 61 LNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASV 120
+N NV A +V+NWSGTCY PLIGAF+ADAYLGRYWTIASF +IY+ GMT+LT+SASV
Sbjct: 61 MNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASV 120
Query: 121 HGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK 180
GL P C CH T Q A+ F+ LYLIALGTGGIKPCVSSFGADQFDD DE EK+ K
Sbjct: 121 PGLTPTCSGET-CHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESK 179
Query: 181 SSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQK 240
SSFFNWFYF IN+GA++A+S LVWIQ NVGWGWG G+P VAMAIAVV FFAGS YR QK
Sbjct: 180 SSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQK 239
Query: 241 PGGSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAA 283
PGGSPLTR+ Q SLLYE DAE ++IGS KL+HTK L+F DKAA
Sbjct: 240 PGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAA 299
Query: 284 VETPSDCVKGSV--NAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGN 341
VET SD KG+ ++W+LCTVTQVEE K++IRLLPIWA GIVF++VYSQMGT+FVLQGN
Sbjct: 300 VETESDN-KGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGN 358
Query: 342 TMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGL 401
T+D H+ +F+IPSASLSLFDT+SV+FW P+YD+LIVP ARK+TGH+ GFTQLQRI IGL
Sbjct: 359 TLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGL 418
Query: 402 VISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEF 461
VISIF+M++AG LE+ RL V+ HN Y + IPM+IFWQVPQYF++GCAEVFTFIGQLEF
Sbjct: 419 VISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEF 478
Query: 462 FYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYF 521
FY+QAPDAMRSLCSALSLT A GNYLST LV +VT + G+PGWI NLN G+L YF
Sbjct: 479 FYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYF 538
Query: 522 FWLLALLSVLNLGVYLMVARCYTYKK 547
FWLLA LS LN VYL +A+ YTYKK
Sbjct: 539 FWLLAGLSFLNFLVYLWIAKWYTYKK 564
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/564 (60%), Positives = 410/564 (72%), Gaps = 21/564 (3%)
Query: 4 EEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQ 63
E ++ DG++DF P +K++TG WKACP+ILGNECCERLAYYGI NL+ YL +L+Q
Sbjct: 20 EVKLYAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQ 79
Query: 64 GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGL 123
GNV A NVT W GTCY+ PLIGA LADAY GRYWTIA FS IY IGM+ LT+SASV L
Sbjct: 80 GNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPAL 139
Query: 124 KPLCDKRNVC-HPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
KP + C T Q A+FF GLYLIALGTGGIKPCVSSFGADQFDD D E+ +K+S
Sbjct: 140 KPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKAS 199
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFYFSINIGALV++S LVWIQ N GWG GFGIP V M +A+ SFF G+ LYR+QKPG
Sbjct: 200 FFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPG 259
Query: 243 GSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVE 285
GSP+TRI Q +LLYET D A+ GS K++HT +LDKAAV
Sbjct: 260 GSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVI 319
Query: 286 TPSDCVKGSV-NAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMD 344
+ + G N+WRLCTVTQVEE K +IR+ PIWA GI+FSAVY+QM T+FV QG M+
Sbjct: 320 SEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMN 379
Query: 345 LHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVIS 404
I SF++P A+L FDT SVI WVP+YDR IVPLARKFTG GFT++QR+ IGL +S
Sbjct: 380 CKI-GSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVS 438
Query: 405 IFAMLTAGTLELVRLREVKKHNYYEL-KHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFY 463
+ M A +E++RL E +P+S+ WQ+PQYFI+G AEVF FIGQLEFFY
Sbjct: 439 VLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFY 498
Query: 464 EQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFW 523
+Q+PDAMRSLCSAL+L T ALGNYLS+L++ +VT F+TR+G+ GWI DNLN G+L YFFW
Sbjct: 499 DQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFW 558
Query: 524 LLALLSVLNLGVYLMVARCYTYKK 547
LLA LS++N+ VY A Y KK
Sbjct: 559 LLAGLSLVNMAVYFFSAARYKQKK 582
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 628 bits (1619), Expect = e-179, Method: Compositional matrix adjust.
Identities = 307/560 (54%), Positives = 395/560 (70%), Gaps = 30/560 (5%)
Query: 10 NDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAV 69
DG+ID P KK+TG WKACP+ILGNECCERLAYYGI NL+ Y EL++ NV A
Sbjct: 37 EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96
Query: 70 NNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDK 129
++V W GTCY+ PLIGA +AD+Y GRYWTIASFS IY IGM +LT+SAS+ LKP
Sbjct: 97 SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156
Query: 130 RN---VCHP-TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185
+C P T +Q AVFF GLYLIALGTGGIKPCVSSFGADQFDD D E+ +K+SFFN
Sbjct: 157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216
Query: 186 WFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSP 245
WFYFSINIG+ ++++ LVW+Q NVGWG GF IP V M +++ SFF G+ LYR+QKPGGSP
Sbjct: 217 WFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSP 276
Query: 246 LTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPS 288
+TR+CQ S LYET + + GS K+ HT FLDKAAV +
Sbjct: 277 ITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEY 336
Query: 289 DCVKGSV-NAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHI 347
+ G+ N W+LCTVTQVEE K++IR+ PIWA GIV+S +YSQ+ TLFV QG +M+ I
Sbjct: 337 ESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMN-RI 395
Query: 348 DNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFA 407
SFEIP AS +FDT+ V+ +PIYDR +VP R+FTG G T LQR+ IGL +S+ +
Sbjct: 396 IRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLS 455
Query: 408 MLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAP 467
+ A +E VRL+ + + MSIFWQ+PQY ++G AEVF FIG++EFFY+++P
Sbjct: 456 IAAAAIVETVRLQLAQ-------DFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESP 508
Query: 468 DAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLAL 527
DAMRS+CSAL+L A+G+YLS+L++ +V F+ GK GW+PD+LN G+L YFFWLL
Sbjct: 509 DAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVS 568
Query: 528 LSVLNLGVYLMVARCYTYKK 547
L ++N+ VY ++ +T KK
Sbjct: 569 LGLVNIPVYALICVKHTKKK 588
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 579 bits (1492), Expect = e-164, Method: Compositional matrix adjust.
Identities = 293/548 (53%), Positives = 377/548 (68%), Gaps = 26/548 (4%)
Query: 4 EEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQ 63
E ++ DG+ID P +K+ TG WKACP+I NECCERLAYYGI NL+ Y EL++
Sbjct: 21 EVKLYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHE 80
Query: 64 GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGL 123
NV A +V W GTCY+ PLIGA +ADAY GRYWTIA FS IY GM LT+SASV GL
Sbjct: 81 TNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGL 140
Query: 124 KPLCDKRNVCHP-TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
KP ++C P T +Q V F GLYLIALGTGGIKPCVSSFGADQFD D +E+ +K+S
Sbjct: 141 KPAECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKAS 200
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFYF+INIGA V+++ LVWIQ N GW GF IP V M +A +SFF G+ LYR+QKP
Sbjct: 201 FFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPR 260
Query: 243 GSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCT 302
GSP+T +CQ L + +++ + K E +D + N W+LCT
Sbjct: 261 GSPITSVCQVL-----------VAAYRKSNLK--------VPEDSTDEGDANTNPWKLCT 301
Query: 303 VTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFD 362
VTQVEE K ++RL+PIWA GI+FS ++SQ+ TLFV QG M I FEIP A+L +FD
Sbjct: 302 VTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI-GLFEIPPATLGMFD 360
Query: 363 TISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREV 422
T SV+ VPIYDR+IVPL R+FTG GFT+LQR+ IGL +S+ ++ A +E VRL+
Sbjct: 361 TASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVETVRLQLA 420
Query: 423 KKHNYYELKHI-PMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTT 481
+ + E I P++IFWQ+PQYF++G A VF F+G++EFFYEQ+PD+MRSLCSA +L T
Sbjct: 421 RDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALLT 480
Query: 482 AALGNYLSTLLVNIVTDFSTRHGKPGWIP-DNLNYGNLHYFFWLLALLSVLNLGVYLMVA 540
LGNYLS+L++ +V S GK WIP DN+N G+L YFFWLL L +N+ V++ +
Sbjct: 481 TTLGNYLSSLIITLVAYLS---GKDCWIPSDNINNGHLDYFFWLLVSLGSVNIPVFVFFS 537
Query: 541 RCYTYKKL 548
YT+ K+
Sbjct: 538 VKYTHMKV 545
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1182), Expect = e-128, Method: Compositional matrix adjust.
Identities = 250/551 (45%), Positives = 347/551 (62%), Gaps = 24/551 (4%)
Query: 24 KETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMP 83
+ G P+I NE CE+LA G + N+++YL +L+ +A N +TN++GT + P
Sbjct: 22 RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTP 81
Query: 84 LIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPL-CDKRNVCH-PTGLQIA 141
L+GAF+AD++ GR+WTI SIIY IGMT+LT+SA + L+P C VC Q++
Sbjct: 82 LLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEVCVVADTAQLS 141
Query: 142 VFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASC 201
+ +V L L ALG+GGI+PCV +FGADQFD+ D + K ++FNW+YF + L+A +
Sbjct: 142 ILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTV 201
Query: 202 LVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQ---------- 251
LVWIQ NVGWG G GIP VAM ++V++F G +LYR+ P GSP TR+ Q
Sbjct: 202 LVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRK 261
Query: 252 -------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVK-GSV-NAWRLCT 302
SLLY + + + KL HTK +SFLDKAA+ T D +K G + N WRL T
Sbjct: 262 LRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLST 321
Query: 303 VTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFD 362
V +VEE KS+IR+ PI A GI+ Y+Q GT + Q TM+ H+ NSF+IP+ S+S+F
Sbjct: 322 VHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFT 381
Query: 363 TISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREV 422
T++++ + YDR+ V +ARKFTG + G T L R+ IG VISI A L AG +E+ R
Sbjct: 382 TVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVA 441
Query: 423 KKHNYYELKH--IPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLT 480
+H + H +P+S W +PQY + G AE F IG LEFFY+QAP++MRS +AL
Sbjct: 442 IEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWM 501
Query: 481 TAALGNYLSTLLVNIVTDFSTRHGKPGWIPD-NLNYGNLHYFFWLLALLSVLNLGVYLMV 539
++GNY+STLLV +V FS + W+PD NLN G L YF+WL+ +L +NL YL
Sbjct: 502 AISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWC 561
Query: 540 ARCYTYKKLVV 550
A+ YTYK + V
Sbjct: 562 AKIYTYKPVQV 572
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/559 (41%), Positives = 350/559 (62%), Gaps = 28/559 (5%)
Query: 7 IHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNV 66
++T DGT+D +P + +TG W+AC ++LG E ER+A+YGI +NLVNYL L++ +
Sbjct: 6 VYTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHEDTI 65
Query: 67 QAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPL 126
+V NV NWSG ++ P+ GA++AD+Y+GR+WT + S+IYV+GM +LTM+ +V L+P
Sbjct: 66 SSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLRPT 125
Query: 127 CDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186
C+ + LQ+ F++ LY IA+G GG KP +S+FGADQFD Y EKK+K SFFNW
Sbjct: 126 CENGVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKVSFFNW 185
Query: 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRY-------- 238
+ FS +GAL A LV+IQ N+GWG G+GIP V + +++V F+ G+ YR+
Sbjct: 186 WMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVIKTDNL 245
Query: 239 -----QKPGGSPLTRICQS-----LLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPS 288
Q P + R Q LYE + G H++ HT FLDKAA++T S
Sbjct: 246 AKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAAIKTSS 305
Query: 289 DCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHID 348
CTVT+VE K ++ L+ IW + ++ S +++Q+ TLFV QG T+D I
Sbjct: 306 RVP---------CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIG 356
Query: 349 NSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAM 408
++F+IP+ASL F T+S++ VP+YD+ VP RK TG+ G T LQR+ +G I I A+
Sbjct: 357 SNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAI 416
Query: 409 LTAGTLELVRLREVKK-HNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAP 467
A +E+ R+R +K+ H + +PMSIFW +PQY ++G +VF IG LEFFY+Q+P
Sbjct: 417 AIASAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSP 476
Query: 468 DAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLAL 527
+ M+SL + + LGN+L++ LV ++ +++ G WI +NLN L Y++ L +
Sbjct: 477 EEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYYGFLVV 536
Query: 528 LSVLNLGVYLMVARCYTYK 546
+S++N+G+++ A Y YK
Sbjct: 537 ISIVNMGLFVWAASKYVYK 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/577 (40%), Positives = 357/577 (61%), Gaps = 32/577 (5%)
Query: 1 MAAEE--DIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLR 58
M EE D +T DGT+D P + G WKAC +++ E ER+AYYGI++NL Y+
Sbjct: 1 MTVEEVGDDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMT 60
Query: 59 FELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSA 118
+L+QG V++ NNVTNW GT ++ P++GA++ DA LGRY T IY GM +LT+S
Sbjct: 61 TKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSV 120
Query: 119 SVHGLKP-LCDKRNV--CHPTG-LQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDE 174
++ G+KP C NV C LQ+AVFF LY +A+GTGG KP +S+ GADQFD +D
Sbjct: 121 TIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDP 180
Query: 175 AEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234
EK +K SFFNW+ FSI G L A + LV++Q NVGW G+G+P + +AI++ F G+
Sbjct: 181 KEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTP 240
Query: 235 LYRYQKPGGSPLTRICQSLL-----------------YETADAEFAVIGSHKLDHTKQLS 277
YR++ P GSP T++ + ++ +E E+ G+ + T L
Sbjct: 241 FYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLR 300
Query: 278 FLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFV 337
FLD+A+++T G+ + W LCT T+VEE K ++R+LP+ I V S + +Q+ TLFV
Sbjct: 301 FLDRASLKT------GTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354
Query: 338 LQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRI 397
QG T+D + SF IP ASLS F T+S++ + +YDR+ V + RKFTG+ G T LQR+
Sbjct: 355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRM 414
Query: 398 AIGLVISIFAMLTAGTLELVRLREVKKHNYYELK--HIPMSIFWQVPQYFIIGCAEVFTF 455
IGL+ I M+ A E RL+ H +P++IF +PQ+ ++G A+ F
Sbjct: 415 GIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLE 474
Query: 456 IGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNY 515
+ +LEFFY+QAP++M+SL ++ S T+ A+GN++S+ L++ V++ + + G+ GWI +NLN
Sbjct: 475 VAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR-GWILNNLNE 533
Query: 516 GNLHYFFWLLALLSVLNLGVYLMVARCYTYKKLVVSS 552
L Y++ A+L+++N ++L+V + Y Y+ V S
Sbjct: 534 SRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDS 570
|
Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/580 (41%), Positives = 363/580 (62%), Gaps = 38/580 (6%)
Query: 1 MAAEE--DIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLR 58
M EE D +T DGT+D + +TG WKAC +++ E ER+AYYGI++NLV Y+
Sbjct: 1 MTVEEVGDDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMT 60
Query: 59 FELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSA 118
+L+QG V++ NNVTNW GT ++ P++GA++ADA+ GRY T S IY++GM +LT+S
Sbjct: 61 TKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSV 120
Query: 119 SVHGLK-PLCDKRNV--CHPTG-LQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDE 174
S+ GLK P C NV C +Q+AVFF LY +A+GTGG KP +S+ GADQFD++D
Sbjct: 121 SLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDP 180
Query: 175 AEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234
+K K SFFNW+ FSI G A + LV++Q NVGW G+G+ + +A ++ F G+R
Sbjct: 181 KDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTR 240
Query: 235 LYRYQKPGGSPLTRICQSLL-----------------YETADAEFAVIGSHKLDHTKQLS 277
LYR++ P GSP T++ + ++ YE E+A + + T L
Sbjct: 241 LYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLR 300
Query: 278 FLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFV 337
FL++A+++T GS + WRLCT+T+VEE K ++++LP+ + V S + +Q+ TLF+
Sbjct: 301 FLNRASLKT------GSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354
Query: 338 LQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRI 397
QG T+D + N+F IP ASL F T S++ + IYDR+ V RK TG+ G T LQR+
Sbjct: 355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRM 414
Query: 398 AIGLVISIFAMLTAGTLELVRLREVKKHNYYELKH-----IPMSIFWQVPQYFIIGCAEV 452
IG+++ I M+ A E RL+ +H L H IP+SIF +PQY ++G A+
Sbjct: 415 GIGMILHILIMIIASITERYRLKVAAEHG---LTHQTAVPIPLSIFTLLPQYVLMGLADA 471
Query: 453 FTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDN 512
F I +LEFFY+QAP++M+SL ++ + T+ A+G ++S++L++ V+ + + G+ GWI +N
Sbjct: 472 FIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGR-GWIQNN 530
Query: 513 LNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKLVVSS 552
LN L ++ A+L++LN ++L+V R Y Y+ V S
Sbjct: 531 LNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQS 570
|
Peptide transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/567 (41%), Positives = 343/567 (60%), Gaps = 26/567 (4%)
Query: 6 DIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGN 65
++ T DG++D PA++ TG W IL N+ LA++G+ NLV +L + Q N
Sbjct: 9 EVCTQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDN 68
Query: 66 VQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKP 125
+A NNV+ W+GT Y+ L+GAFL+D+Y GRY T A F +V G+ +L++S L+P
Sbjct: 69 AEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEP 128
Query: 126 L-CD-KRNVCHP-TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
C + + C P + + +F++ +YLIALG GG +P +++FGADQFD D E K +
Sbjct: 129 SGCGVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIA 188
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FF++FY ++N+G+L + + L + + W GF A + +V F G+ YR+ P
Sbjct: 189 FFSYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPR 248
Query: 243 GSPLTRICQSLLYETA--------------DAEFAVIGSHKLDHTKQLSFLDKAAVETPS 288
SP +R CQ L+ T D+E G K+ HTK FLD+AA+ TP
Sbjct: 249 ESPWSRFCQVLVAATRKAKIDVHHEELNLYDSETQYTGDKKILHTKGFRFLDRAAIVTPD 308
Query: 289 DCVK-----GSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTM 343
D + + WRLC+VTQVEE K ++RLLPIW I++S V++QM +LFV+QG M
Sbjct: 309 DEAEKVESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQGAAM 368
Query: 344 DLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKF--TGHKNGFTQLQRIAIGL 401
+I N F IP++S+S FD +SV F++ Y R + PL + T G T+LQR+ IGL
Sbjct: 369 KTNIKN-FRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMGIGL 427
Query: 402 VISIFAMLTAGTLELVRLREVK-KHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLE 460
VI+I AM++AG +E+ RL+ + + +SIFWQVPQY +IG +EVF ++GQLE
Sbjct: 428 VIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVGQLE 487
Query: 461 FFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHY 520
FF QAP ++S SAL + + +LGNY+S+LLV+IV ST GWIP+NLN G+L
Sbjct: 488 FFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGHLER 547
Query: 521 FFWLLALLSVLNLGVYLMVARCYTYKK 547
F++LLA L+ + VYL+ A+ Y Y K
Sbjct: 548 FYFLLAGLTAADFVVYLICAKWYKYIK 574
|
Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | ||||||
| 297740242 | 1454 | unnamed protein product [Vitis vinifera] | 0.967 | 0.367 | 0.851 | 0.0 | |
| 359481683 | 1120 | PREDICTED: peptide transporter PTR1-like | 0.954 | 0.471 | 0.851 | 0.0 | |
| 255586505 | 1121 | peptide transporter, putative [Ricinus c | 0.952 | 0.470 | 0.840 | 0.0 | |
| 224104319 | 570 | predicted protein [Populus trichocarpa] | 0.989 | 0.959 | 0.720 | 0.0 | |
| 147802380 | 568 | hypothetical protein VITISV_034788 [Viti | 0.985 | 0.959 | 0.730 | 0.0 | |
| 224054566 | 570 | predicted protein [Populus trichocarpa] | 0.989 | 0.959 | 0.707 | 0.0 | |
| 449440283 | 569 | PREDICTED: peptide transporter PTR5-like | 0.994 | 0.966 | 0.708 | 0.0 | |
| 225434680 | 582 | PREDICTED: peptide transporter PTR1-like | 0.989 | 0.939 | 0.721 | 0.0 | |
| 297745947 | 569 | unnamed protein product [Vitis vinifera] | 0.989 | 0.961 | 0.721 | 0.0 | |
| 356566147 | 572 | PREDICTED: peptide transporter PTR1-like | 0.989 | 0.956 | 0.712 | 0.0 |
| >gi|297740242|emb|CBI30424.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/552 (85%), Positives = 498/552 (90%), Gaps = 17/552 (3%)
Query: 3 AEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELN 62
AEEDI+T DGTIDF + PAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYL+F+LN
Sbjct: 2 AEEDIYTKDGTIDFRSNPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLKFQLN 61
Query: 63 QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122
Q NV A+NNVTNWSGTCYV PL+GAFLADAYLGRYWTIA FSIIYV GMT+LT+SAS HG
Sbjct: 62 QRNVVAINNVTNWSGTCYVTPLLGAFLADAYLGRYWTIAGFSIIYVFGMTLLTLSASAHG 121
Query: 123 LKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
LKPLCD +NVC+PTGLQ AVFFVGLYLIALGTGGIKPCVSSFGADQFDD DE E+K KSS
Sbjct: 122 LKPLCDGQNVCYPTGLQTAVFFVGLYLIALGTGGIKPCVSSFGADQFDDSDETERKSKSS 181
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFYFSINIGAL+A+S LVW+QTNVGWGWGFGIPAVAM IAV+SFF+G+RLYR QKPG
Sbjct: 182 FFNWFYFSINIGALLASSVLVWVQTNVGWGWGFGIPAVAMGIAVMSFFSGTRLYRNQKPG 241
Query: 243 GSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVE 285
GSPLTRICQ LLYETAD+E AV GS KLDHTK LSF DKAAVE
Sbjct: 242 GSPLTRICQVIVASLRKFQVEVPADKCLLYETADSESAVTGSRKLDHTKHLSFFDKAAVE 301
Query: 286 TPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345
T D +KGSV++WRLCTVTQVEE KSIIRLLPIWA GIVFSAVYSQMGTLFVLQGNTMDL
Sbjct: 302 THIDAIKGSVDSWRLCTVTQVEELKSIIRLLPIWATGIVFSAVYSQMGTLFVLQGNTMDL 361
Query: 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISI 405
HI SF+IPSASLSLFDTISVIFWVPIYDRLIVP ARKFTGHK+GFTQLQRIAIGLVISI
Sbjct: 362 HITGSFQIPSASLSLFDTISVIFWVPIYDRLIVPFARKFTGHKSGFTQLQRIAIGLVISI 421
Query: 406 FAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ 465
FAML AGTLEL+RLR V++HNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ
Sbjct: 422 FAMLVAGTLELLRLRMVREHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ 481
Query: 466 APDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLL 525
APDAMRSLCSALSLTTAALGNYLSTLLVN+VTD STR GKPGWIPDNLNYG+LHYFFWLL
Sbjct: 482 APDAMRSLCSALSLTTAALGNYLSTLLVNVVTDVSTRGGKPGWIPDNLNYGHLHYFFWLL 541
Query: 526 ALLSVLNLGVYL 537
A LSV NLGVYL
Sbjct: 542 AALSVFNLGVYL 553
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481683|ref|XP_002274041.2| PREDICTED: peptide transporter PTR1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/545 (85%), Positives = 492/545 (90%), Gaps = 17/545 (3%)
Query: 3 AEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELN 62
AEEDI+T DGTIDF + PAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYL+F+LN
Sbjct: 2 AEEDIYTKDGTIDFRSNPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLKFQLN 61
Query: 63 QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122
Q NV A+NNVTNWSGTCYV PL+GAFLADAYLGRYWTIA FSIIYV GMT+LT+SAS HG
Sbjct: 62 QRNVVAINNVTNWSGTCYVTPLLGAFLADAYLGRYWTIAGFSIIYVFGMTLLTLSASAHG 121
Query: 123 LKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
LKPLCD +NVC+PTGLQ AVFFVGLYLIALGTGGIKPCVSSFGADQFDD DE E+K KSS
Sbjct: 122 LKPLCDGQNVCYPTGLQTAVFFVGLYLIALGTGGIKPCVSSFGADQFDDSDETERKSKSS 181
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFYFSINIGAL+A+S LVW+QTNVGWGWGFGIPAVAM IAV+SFF+G+RLYR QKPG
Sbjct: 182 FFNWFYFSINIGALLASSVLVWVQTNVGWGWGFGIPAVAMGIAVMSFFSGTRLYRNQKPG 241
Query: 243 GSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVE 285
GSPLTRICQ LLYETAD+E AV GS KLDHTK LSF DKAAVE
Sbjct: 242 GSPLTRICQVIVASLRKFQVEVPADKCLLYETADSESAVTGSRKLDHTKHLSFFDKAAVE 301
Query: 286 TPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345
T D +KGSV++WRLCTVTQVEE KSIIRLLPIWA GIVFSAVYSQMGTLFVLQGNTMDL
Sbjct: 302 THIDAIKGSVDSWRLCTVTQVEELKSIIRLLPIWATGIVFSAVYSQMGTLFVLQGNTMDL 361
Query: 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISI 405
HI SF+IPSASLSLFDTISVIFWVPIYDRLIVP ARKFTGHK+GFTQLQRIAIGLVISI
Sbjct: 362 HITGSFQIPSASLSLFDTISVIFWVPIYDRLIVPFARKFTGHKSGFTQLQRIAIGLVISI 421
Query: 406 FAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ 465
FAML AGTLEL+RLR V++HNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ
Sbjct: 422 FAMLVAGTLELLRLRMVREHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ 481
Query: 466 APDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLL 525
APDAMRSLCSALSLTTAALGNYLSTLLVN+VTD STR GKPGWIPDNLNYG+LHYFFWLL
Sbjct: 482 APDAMRSLCSALSLTTAALGNYLSTLLVNVVTDVSTRGGKPGWIPDNLNYGHLHYFFWLL 541
Query: 526 ALLSV 530
A LSV
Sbjct: 542 AALSV 546
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255586505|ref|XP_002533893.1| peptide transporter, putative [Ricinus communis] gi|223526157|gb|EEF28493.1| peptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/545 (84%), Positives = 497/545 (91%), Gaps = 18/545 (3%)
Query: 4 EEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQ 63
+EDI+T DGTIDF PA+KK+TGTWKACPYILGNECCERLAYYGINTNLVNYL+F+LNQ
Sbjct: 3 QEDIYTKDGTIDFSGNPAIKKKTGTWKACPYILGNECCERLAYYGINTNLVNYLKFQLNQ 62
Query: 64 GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGL 123
G+VQAVNNVTNWSGTCYVMPL+GAFLADAYLGRYWTIASFSIIYV+GMT+LT+SAS+HGL
Sbjct: 63 GSVQAVNNVTNWSGTCYVMPLLGAFLADAYLGRYWTIASFSIIYVLGMTLLTLSASLHGL 122
Query: 124 KPLCDKR-NVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
P CD NVC+PTG Q AVFF+GLYLIALGTGGIKPCVSSFGADQFDD DEAEKKKKSS
Sbjct: 123 MPSCDNHTNVCNPTGKQTAVFFLGLYLIALGTGGIKPCVSSFGADQFDDSDEAEKKKKSS 182
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFYFSINIGALVA+S LVWIQTNVGWGWGFGIPAVAMAIAV++FF+G +LYR Q+PG
Sbjct: 183 FFNWFYFSINIGALVASSVLVWIQTNVGWGWGFGIPAVAMAIAVMTFFSGIKLYRNQRPG 242
Query: 243 GSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVE 285
GSPLTRICQ SLL+ET+D E AV GS KLDHT+QLSF DKAAVE
Sbjct: 243 GSPLTRICQVIVASLRKFRVQVPKDESLLFETSDEESAVKGSRKLDHTEQLSFFDKAAVE 302
Query: 286 TPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345
TPSDCVKGSVN W LCTVTQVEE KS+IRLLPIWA GI+FSAVYSQMGTLFVLQGNTMDL
Sbjct: 303 TPSDCVKGSVNKWSLCTVTQVEELKSVIRLLPIWATGIIFSAVYSQMGTLFVLQGNTMDL 362
Query: 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISI 405
+ SFEIPSASLSLFDTISVIFWVPIYDR+IVP+AR+FTGHKNGFTQLQRIAIGLVISI
Sbjct: 363 QMSRSFEIPSASLSLFDTISVIFWVPIYDRVIVPIARRFTGHKNGFTQLQRIAIGLVISI 422
Query: 406 FAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ 465
AM+ AGTLE+VRLR+V+KHNYY+LKHIP+SIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ
Sbjct: 423 VAMMVAGTLEMVRLRQVRKHNYYKLKHIPISIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ 482
Query: 466 APDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLL 525
APDAMRSLCSALSLTTAALGNYLSTLLVN+VTD STRHG PGWIPDNLNYG+LHYFFWLL
Sbjct: 483 APDAMRSLCSALSLTTAALGNYLSTLLVNVVTDLSTRHGSPGWIPDNLNYGHLHYFFWLL 542
Query: 526 ALLSV 530
A+LS+
Sbjct: 543 AVLSL 547
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104319|ref|XP_002313394.1| predicted protein [Populus trichocarpa] gi|222849802|gb|EEE87349.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/565 (72%), Positives = 471/565 (83%), Gaps = 18/565 (3%)
Query: 3 AEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELN 62
AEED++T DGT+D+ PA +KETGTW+ACP+I+GNE CERLAYYG+++NLV Y + LN
Sbjct: 2 AEEDVYTKDGTVDYLGNPANRKETGTWRACPFIIGNEFCERLAYYGMSSNLVLYFKHRLN 61
Query: 63 QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122
Q + A N NW GTCY+ PLIGAF+ADAYLGRYWTIASFS IYV GMT+LTMSA+VHG
Sbjct: 62 QSSATATRNNLNWGGTCYLTPLIGAFVADAYLGRYWTIASFSTIYVAGMTLLTMSATVHG 121
Query: 123 LKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
L+P C ++ CHPTG Q AV FV LYLIALGTGGIKPCVSS+GADQFDD DE EKK KSS
Sbjct: 122 LRPECYSKDHCHPTGGQTAVTFVALYLIALGTGGIKPCVSSYGADQFDDADETEKKHKSS 181
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFY SIN+GAL+A S LVWIQ NV WGWGFGIPA+AMAIAVVSFF+G++L+RYQKPG
Sbjct: 182 FFNWFYLSINVGALIAGSVLVWIQDNVSWGWGFGIPAIAMAIAVVSFFSGTKLFRYQKPG 241
Query: 243 GSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVE 285
GSPLTRICQ SLL+ETADAE + GS KLDHT++ SFLDKAAVE
Sbjct: 242 GSPLTRICQVLVASFRKQKVEVPADKSLLHETADAESNIKGSRKLDHTEEFSFLDKAAVE 301
Query: 286 TPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345
T D +KG+ + W LCTVTQVEE K+IIRLLPIWA GI+FSAVYSQMG LFVLQG TMD
Sbjct: 302 TEKDDIKGTGDPWNLCTVTQVEELKAIIRLLPIWATGIIFSAVYSQMGNLFVLQGETMDK 361
Query: 346 HIDNS-FEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVIS 404
+ NS FEIPSASLS+FDT+SVIFWVP+YDR+IVP+ARKFTGHKNG TQLQR+ IGL IS
Sbjct: 362 FVGNSTFEIPSASLSIFDTLSVIFWVPVYDRIIVPVARKFTGHKNGLTQLQRMGIGLFIS 421
Query: 405 IFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYE 464
IFAM++A LEL RL+ V+ +NYYEL +P+SIFWQVPQYF+IGCAEVFTFIGQLEFFYE
Sbjct: 422 IFAMVSAAILELKRLQMVRNNNYYELDSVPISIFWQVPQYFLIGCAEVFTFIGQLEFFYE 481
Query: 465 QAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWL 524
QAPDAMRS+CSALSLTT ALGNYLS+LLV IVT ST++GK GWIPDNLNYG++ YFFWL
Sbjct: 482 QAPDAMRSMCSALSLTTVALGNYLSSLLVTIVTTISTKNGKAGWIPDNLNYGHIDYFFWL 541
Query: 525 LALLSVLNLGVYLMVARCYTYKKLV 549
L +LSVLNLG +L+++ YTYKK +
Sbjct: 542 LGMLSVLNLGAFLLISNWYTYKKAI 566
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147802380|emb|CAN72572.1| hypothetical protein VITISV_034788 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/563 (73%), Positives = 471/563 (83%), Gaps = 18/563 (3%)
Query: 3 AEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELN 62
AE+D++T DGT++ NKPA KK+TG WKAC +ILGNECCERLAYYG++TNLVNYL+ LN
Sbjct: 2 AEDDMYTKDGTMNIHNKPANKKKTGQWKACRFILGNECCERLAYYGMSTNLVNYLQIRLN 61
Query: 63 QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122
QGNV A NNVTNWSGTCY+ PLIGAFLADAY GR+W IA FSIIY GM +LTM+AS+ G
Sbjct: 62 QGNVTASNNVTNWSGTCYITPLIGAFLADAYFGRFWIIAIFSIIYFCGMVLLTMTASIKG 121
Query: 123 LKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
L+P CD N C PT LQ AV F+ LYLIALGTGGIKPCVSSFGADQFD DEAEKKKKSS
Sbjct: 122 LRPSCDD-NGCDPTKLQSAVCFIALYLIALGTGGIKPCVSSFGADQFDVNDEAEKKKKSS 180
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFY SIN+GAL+A+S LVWIQ NVGWGWGFGIPAVAMAIAVVSFF+GSR+YR QKPG
Sbjct: 181 FFNWFYLSINVGALIASSVLVWIQMNVGWGWGFGIPAVAMAIAVVSFFSGSRMYRLQKPG 240
Query: 243 GSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVE 285
GSPLTRICQ SLLYET DAE + GS KL+HT++L F DKAAVE
Sbjct: 241 GSPLTRICQVLVASTRKYHVKVPNNKSLLYETKDAESNIKGSCKLEHTEKLRFFDKAAVE 300
Query: 286 TPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345
SD VK S N W+LCTVTQVEE KSI+RLLP+WA GI+FS VYSQM T+FVLQGNTMD
Sbjct: 301 VESDHVKSSNNPWKLCTVTQVEELKSILRLLPVWATGILFSTVYSQMSTMFVLQGNTMDQ 360
Query: 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISI 405
H+ +F+IPSASLSLFDT+SVIFW P+YDR+IVP ARKFTGH+ GFTQLQR+ IGLVISI
Sbjct: 361 HMGPNFKIPSASLSLFDTLSVIFWAPVYDRIIVPFARKFTGHERGFTQLQRMGIGLVISI 420
Query: 406 FAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ 465
+M+ AG LE++RL V+KHNYY+L++IPMSIFWQVPQYF+IGCAEVFTFIGQLEF+Y+Q
Sbjct: 421 ISMIVAGILEVIRLNYVRKHNYYDLEYIPMSIFWQVPQYFLIGCAEVFTFIGQLEFYYDQ 480
Query: 466 APDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLL 525
APDA RSLCSALSLTT ALGNYLSTLLV IV +TR+GK GWIPDN+N G+L YF+WLL
Sbjct: 481 APDATRSLCSALSLTTNALGNYLSTLLVTIVNKVTTRNGKMGWIPDNMNRGHLDYFYWLL 540
Query: 526 ALLSVLNLGVYLMVARCYTYKKL 548
A+LS+LN VYL +A+ YTYKK+
Sbjct: 541 AILSLLNFLVYLWIAKWYTYKKV 563
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054566|ref|XP_002298324.1| predicted protein [Populus trichocarpa] gi|222845582|gb|EEE83129.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/565 (70%), Positives = 468/565 (82%), Gaps = 18/565 (3%)
Query: 3 AEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELN 62
AEED++T DGT+D+ PA KKETGTW+ACPYI+GNE CERLAYYG+++NL+ Y + LN
Sbjct: 2 AEEDVYTKDGTVDYRGNPANKKETGTWRACPYIIGNEFCERLAYYGMSSNLILYFKHRLN 61
Query: 63 QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122
Q + A N NW GTCY+ PLIGAF ADAYLGRYWTIA FSIIYV+GMT+LT+SA+V G
Sbjct: 62 QQSATATRNNLNWGGTCYLTPLIGAFFADAYLGRYWTIACFSIIYVMGMTLLTISATVPG 121
Query: 123 LKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
L+P C + C+PT Q A+ FV LYLIALGTGGIKPCVSS+GADQFDD DE EKK KSS
Sbjct: 122 LRPKCYAEDDCNPTDAQSALAFVSLYLIALGTGGIKPCVSSYGADQFDDADEVEKKHKSS 181
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFY SIN+GAL+A S LVW+Q NV WGWGFGIPA+AMAIAV SFF+G+RL+RYQKPG
Sbjct: 182 FFNWFYLSINVGALIAGSVLVWVQDNVSWGWGFGIPAIAMAIAVASFFSGTRLFRYQKPG 241
Query: 243 GSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVE 285
GSPLTRICQ +LLYETADAE + GS KLDHT++ SFLDKAAVE
Sbjct: 242 GSPLTRICQVLLASFRKKKVEVPADKALLYETADAESNIKGSRKLDHTEEFSFLDKAAVE 301
Query: 286 TPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345
T D +KG V+ WRLCTVTQVEE KSIIRLLPIWA GI+F+AVYSQMG LFVLQG MD
Sbjct: 302 TEKDDIKGPVDPWRLCTVTQVEELKSIIRLLPIWATGIIFTAVYSQMGNLFVLQGEQMDK 361
Query: 346 HIDNS-FEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVIS 404
++ NS F+IPSASLS+FDT+SVIFWVP+YDR+IVP+ARK+TGHKNG TQLQR+ IGL IS
Sbjct: 362 YVGNSNFQIPSASLSIFDTLSVIFWVPVYDRIIVPVARKYTGHKNGLTQLQRMGIGLFIS 421
Query: 405 IFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYE 464
IF+M++A LEL RL V++HN YELK +P+SIFWQ PQYF+IGCAEVFTFIGQLEFFYE
Sbjct: 422 IFSMVSAAILELKRLEMVRRHNSYELKTVPLSIFWQAPQYFLIGCAEVFTFIGQLEFFYE 481
Query: 465 QAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWL 524
QAPDAMRS+CSALSLTT ALG+YLS+LLV IVT ST++GKPGWIP+NLNYG++ YFFWL
Sbjct: 482 QAPDAMRSMCSALSLTTVALGSYLSSLLVTIVTSISTKNGKPGWIPENLNYGHIDYFFWL 541
Query: 525 LALLSVLNLGVYLMVARCYTYKKLV 549
L +LSVLNL V+L+++ YTYKK V
Sbjct: 542 LGVLSVLNLCVFLLISNWYTYKKPV 566
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440283|ref|XP_004137914.1| PREDICTED: peptide transporter PTR5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/569 (70%), Positives = 467/569 (82%), Gaps = 19/569 (3%)
Query: 3 AEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELN 62
AE+DI+T DGT+D KPA+KK+TG WKAC +ILGNECCERLAYYG++TNLVNYL+ LN
Sbjct: 2 AEDDIYTKDGTVDVHKKPAIKKKTGNWKACRFILGNECCERLAYYGMSTNLVNYLQIRLN 61
Query: 63 QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122
NV A N+VT+WSGTCY+ PLIGAFLADAYLGR+WTIASFSIIY GMT+LTM+AS+ G
Sbjct: 62 MDNVTASNSVTSWSGTCYLTPLIGAFLADAYLGRFWTIASFSIIYAFGMTLLTMAASIPG 121
Query: 123 LKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
LKP CD CHP+G Q A FV LYLIALGTGGIKPCVSSFGADQFD+ DE E+KKKSS
Sbjct: 122 LKPSCDSSG-CHPSGGQTAATFVALYLIALGTGGIKPCVSSFGADQFDENDEVERKKKSS 180
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFYFSIN+GA++A+S LVWIQ NVGWGWGFG+PAVAMAIAVV FF+GS LYR QKP
Sbjct: 181 FFNWFYFSINVGAMIASSVLVWIQMNVGWGWGFGVPAVAMAIAVVFFFSGSSLYRLQKPA 240
Query: 243 GSPLTRICQ-----------------SLLYETADA-EFAVIGSHKLDHTKQLSFLDKAAV 284
GSPLTRI Q SLL+ETAD E + GS KL+HT FLDKA+V
Sbjct: 241 GSPLTRILQVIVAACRKHQVHVPEDKSLLHETADDIESKIEGSRKLEHTNNFKFLDKASV 300
Query: 285 ETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMD 344
ET +D +KG N WRLCTVTQVEE KSI+RLLP+WA GIVF+AVYSQM T+FVLQGNT+D
Sbjct: 301 ETENDRIKGLPNEWRLCTVTQVEELKSIVRLLPVWASGIVFAAVYSQMSTMFVLQGNTLD 360
Query: 345 LHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVIS 404
HI SF+IPSASLS+FDTISV+FW P+YDRLIVP+ARKFT ++ GFTQLQR+ IGL IS
Sbjct: 361 QHIGPSFKIPSASLSIFDTISVLFWAPVYDRLIVPIARKFTNNERGFTQLQRMGIGLAIS 420
Query: 405 IFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYE 464
+F+M+TAG LE+ RL V+ +N Y+++ IPMSIFWQVPQYF IGCAEVFTFIGQLEFFY+
Sbjct: 421 VFSMVTAGALEVARLNYVRVNNLYDVETIPMSIFWQVPQYFFIGCAEVFTFIGQLEFFYD 480
Query: 465 QAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWL 524
QAPDAMRS+ +ALSLTT LGNYLSTLLV IVT +TRHGK GWIP NLN G+L YFFWL
Sbjct: 481 QAPDAMRSMMAALSLTTVGLGNYLSTLLVTIVTKVTTRHGKLGWIPSNLNMGHLDYFFWL 540
Query: 525 LALLSVLNLGVYLMVARCYTYKKLVVSSH 553
LA+LSV+N VYL+VA+CYTYK++ H
Sbjct: 541 LAILSVVNFFVYLLVAKCYTYKRVTGHLH 569
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434680|ref|XP_002280463.1| PREDICTED: peptide transporter PTR1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/564 (72%), Positives = 461/564 (81%), Gaps = 17/564 (3%)
Query: 3 AEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELN 62
AEED +T DGTI++ PA KK+TGTW ACPYILGNE CERLAYYG+++NLV Y +++L+
Sbjct: 15 AEEDNYTKDGTINYQGNPANKKKTGTWTACPYILGNEFCERLAYYGMSSNLVLYFKYKLH 74
Query: 63 QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122
Q + A NV NWSGTCY+ P IGAFLADAYLGRYWTIASFSIIYVIGMT+LT++ASV G
Sbjct: 75 QDSATASKNVLNWSGTCYLTPFIGAFLADAYLGRYWTIASFSIIYVIGMTLLTVTASVPG 134
Query: 123 LKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
LKP C VC PT Q AV F+ LYL+ALGTGGIKPCVSS+GADQFDD DE EK KSS
Sbjct: 135 LKPNCSPSGVCDPTETQTAVCFLALYLVALGTGGIKPCVSSYGADQFDDTDEHEKTHKSS 194
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFY SIN+GAL+A S LVWIQ N+GWG GFGIPA AMAIAVVSFF+G+RLYR QKPG
Sbjct: 195 FFNWFYLSINVGALIAGSILVWIQENIGWGVGFGIPAAAMAIAVVSFFSGTRLYRNQKPG 254
Query: 243 GSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVE 285
GSPLTR+ Q SLLYE AD E + GS KLDHTK LSF DKAAVE
Sbjct: 255 GSPLTRMSQVVVASLKKYRVQVPADKSLLYEIADGESGIQGSRKLDHTKDLSFFDKAAVE 314
Query: 286 TPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345
SD +K S + W++CTVTQVEE K+IIRLLP+WA GI+FSAVYSQMG+LFV+QG +MD
Sbjct: 315 IQSDHIKDSPDPWKICTVTQVEELKAIIRLLPVWATGIIFSAVYSQMGSLFVVQGESMDP 374
Query: 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISI 405
H+ FEIPSASLS+FDTISVIFWVPIYDR+IVP+ARKFTGH NG TQLQR+ IGL ISI
Sbjct: 375 HMGRHFEIPSASLSIFDTISVIFWVPIYDRIIVPVARKFTGHSNGITQLQRMGIGLFISI 434
Query: 406 FAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ 465
FAML+AG LE+VRL VK+HNYY+ IP+SIF+QVPQYFIIGCAEVFTFIGQLEFFYEQ
Sbjct: 435 FAMLSAGILEVVRLGIVKRHNYYDHDRIPLSIFYQVPQYFIIGCAEVFTFIGQLEFFYEQ 494
Query: 466 APDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLL 525
APDAMRS CSALSL T ALGNYLS+LLV IVTD STR GK GWIPDNLN G+LHYFF+LL
Sbjct: 495 APDAMRSFCSALSLATVALGNYLSSLLVTIVTDVSTRGGKLGWIPDNLNRGHLHYFFFLL 554
Query: 526 ALLSVLNLGVYLMVARCYTYKKLV 549
A+LSVLNL +L VA+ YTYK+ V
Sbjct: 555 AILSVLNLVAFLFVAKWYTYKRAV 578
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745947|emb|CBI16003.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/564 (72%), Positives = 461/564 (81%), Gaps = 17/564 (3%)
Query: 3 AEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELN 62
AEED +T DGTI++ PA KK+TGTW ACPYILGNE CERLAYYG+++NLV Y +++L+
Sbjct: 2 AEEDNYTKDGTINYQGNPANKKKTGTWTACPYILGNEFCERLAYYGMSSNLVLYFKYKLH 61
Query: 63 QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122
Q + A NV NWSGTCY+ P IGAFLADAYLGRYWTIASFSIIYVIGMT+LT++ASV G
Sbjct: 62 QDSATASKNVLNWSGTCYLTPFIGAFLADAYLGRYWTIASFSIIYVIGMTLLTVTASVPG 121
Query: 123 LKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
LKP C VC PT Q AV F+ LYL+ALGTGGIKPCVSS+GADQFDD DE EK KSS
Sbjct: 122 LKPNCSPSGVCDPTETQTAVCFLALYLVALGTGGIKPCVSSYGADQFDDTDEHEKTHKSS 181
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFY SIN+GAL+A S LVWIQ N+GWG GFGIPA AMAIAVVSFF+G+RLYR QKPG
Sbjct: 182 FFNWFYLSINVGALIAGSILVWIQENIGWGVGFGIPAAAMAIAVVSFFSGTRLYRNQKPG 241
Query: 243 GSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVE 285
GSPLTR+ Q SLLYE AD E + GS KLDHTK LSF DKAAVE
Sbjct: 242 GSPLTRMSQVVVASLKKYRVQVPADKSLLYEIADGESGIQGSRKLDHTKDLSFFDKAAVE 301
Query: 286 TPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345
SD +K S + W++CTVTQVEE K+IIRLLP+WA GI+FSAVYSQMG+LFV+QG +MD
Sbjct: 302 IQSDHIKDSPDPWKICTVTQVEELKAIIRLLPVWATGIIFSAVYSQMGSLFVVQGESMDP 361
Query: 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISI 405
H+ FEIPSASLS+FDTISVIFWVPIYDR+IVP+ARKFTGH NG TQLQR+ IGL ISI
Sbjct: 362 HMGRHFEIPSASLSIFDTISVIFWVPIYDRIIVPVARKFTGHSNGITQLQRMGIGLFISI 421
Query: 406 FAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQ 465
FAML+AG LE+VRL VK+HNYY+ IP+SIF+QVPQYFIIGCAEVFTFIGQLEFFYEQ
Sbjct: 422 FAMLSAGILEVVRLGIVKRHNYYDHDRIPLSIFYQVPQYFIIGCAEVFTFIGQLEFFYEQ 481
Query: 466 APDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLL 525
APDAMRS CSALSL T ALGNYLS+LLV IVTD STR GK GWIPDNLN G+LHYFF+LL
Sbjct: 482 APDAMRSFCSALSLATVALGNYLSSLLVTIVTDVSTRGGKLGWIPDNLNRGHLHYFFFLL 541
Query: 526 ALLSVLNLGVYLMVARCYTYKKLV 549
A+LSVLNL +L VA+ YTYK+ V
Sbjct: 542 AILSVLNLVAFLFVAKWYTYKRAV 565
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566147|ref|XP_003551296.1| PREDICTED: peptide transporter PTR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/567 (71%), Positives = 463/567 (81%), Gaps = 20/567 (3%)
Query: 3 AEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELN 62
AE+D +T DGT+D+ PA KKETGTWKACPYILGNECCERLAYYG++TNLV Y + LN
Sbjct: 2 AEDDGYTKDGTVDYCGNPANKKETGTWKACPYILGNECCERLAYYGMSTNLVLYFKNRLN 61
Query: 63 QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122
Q + A NV+NWSGTCY+ PLIGA+LAD+YLGRYWTIA FSIIY IGMT+LT+SASV G
Sbjct: 62 QHSATASKNVSNWSGTCYITPLIGAYLADSYLGRYWTIAVFSIIYAIGMTLLTLSASVPG 121
Query: 123 LKPLCDKR--NVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK 180
+KP C C T L+ AV F+ LYLIALGTGGIKPCVSS+GADQFDD D AEK++K
Sbjct: 122 IKPTCHGHGDENCRATTLESAVCFLALYLIALGTGGIKPCVSSYGADQFDDTDSAEKERK 181
Query: 181 SSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQK 240
SSFFNWFYFSINIGAL+A+S LVWIQ NVGWGWGFGIPAVAMAIAVVSFF+G+RLYR QK
Sbjct: 182 SSFFNWFYFSINIGALIASSLLVWIQDNVGWGWGFGIPAVAMAIAVVSFFSGTRLYRNQK 241
Query: 241 PGGSPLTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAA 283
PGGS +TRICQ SLLYETA+ E A+ GS KLDHT +L F DKAA
Sbjct: 242 PGGSAITRICQVVMASIRKYNVEVPADESLLYETAETESAIKGSRKLDHTNELRFFDKAA 301
Query: 284 VETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTM 343
V SD VK S N WRLCTVTQVEE KSI+R+LP+WA GI+FS VY QM TLFVLQG TM
Sbjct: 302 VLAQSDKVKESTNPWRLCTVTQVEELKSILRILPVWATGIIFSTVYGQMSTLFVLQGQTM 361
Query: 344 DLHIDNS-FEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLV 402
D + NS F+IP ASLS+FDT+SVIFWVP+YDR+IVP+A KFTG+KNG TQLQR+ IGL
Sbjct: 362 DTRVGNSTFKIPPASLSIFDTLSVIFWVPVYDRIIVPIATKFTGNKNGLTQLQRMGIGLF 421
Query: 403 ISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFF 462
ISIF+M+ A LEL+RLR V++HNYY+L+ IPM+IFWQVPQYFIIGCAEVF FIGQLEFF
Sbjct: 422 ISIFSMVAAAILELIRLRMVRRHNYYQLEEIPMTIFWQVPQYFIIGCAEVFYFIGQLEFF 481
Query: 463 YEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFF 522
YEQAPDAMRS CSALSLTT ALG YLS+LLV IVT STR+G PGWIPDNLN+G++ YFF
Sbjct: 482 YEQAPDAMRSFCSALSLTTVALGQYLSSLLVTIVTKISTRNGSPGWIPDNLNFGHIDYFF 541
Query: 523 WLLALLSVLNLGVYLMVARCYTYKKLV 549
WLLALLSV+NL +L+V+ YTYK+ V
Sbjct: 542 WLLALLSVVNLIAFLVVSMLYTYKRPV 568
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | ||||||
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.448 | 0.423 | 0.670 | 5.4e-171 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.954 | 0.894 | 0.530 | 4.4e-155 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.453 | 0.460 | 0.607 | 4.2e-145 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.537 | 0.498 | 0.444 | 4.6e-120 | |
| TAIR|locus:2061843 | 583 | AT2G40460 [Arabidopsis thalian | 0.974 | 0.924 | 0.393 | 7.8e-110 | |
| TAIR|locus:2161438 | 582 | PTR3 "peptide transporter 3" [ | 0.990 | 0.941 | 0.397 | 5.5e-109 | |
| TAIR|locus:2119058 | 589 | NRT1.8 "NITRATE TRANSPORTER 1. | 0.520 | 0.488 | 0.430 | 9.2e-107 | |
| TAIR|locus:2033776 | 614 | NRT1.5 "nitrate transporter 1. | 0.457 | 0.412 | 0.45 | 3.1e-106 | |
| TAIR|locus:2009487 | 557 | AT1G22540 [Arabidopsis thalian | 0.969 | 0.962 | 0.375 | 2e-104 | |
| TAIR|locus:2008855 | 590 | NRT1.1 "nitrate transporter 1. | 0.424 | 0.398 | 0.451 | 9.5e-103 |
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 5.4e-171, Sum P(2) = 5.4e-171
Identities = 167/249 (67%), Positives = 193/249 (77%)
Query: 4 EEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQ 63
E ++ DG++DF P +K++TG WKACP+ILGNECCERLAYYGI NL+ YL +L+Q
Sbjct: 20 EVKLYAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQ 79
Query: 64 GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGL 123
GNV A NVT W GTCY+ PLIGA LADAY GRYWTIA FS IY IGM+ LT+SASV L
Sbjct: 80 GNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPAL 139
Query: 124 KPLCDKRNVC-HPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
KP + C T Q A+FF GLYLIALGTGGIKPCVSSFGADQFDD D E+ +K+S
Sbjct: 140 KPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKAS 199
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFYFSINIGALV++S LVWIQ N GWG GFGIP V M +A+ SFF G+ LYR+QKPG
Sbjct: 200 FFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPG 259
Query: 243 GSPLTRICQ 251
GSP+TRI Q
Sbjct: 260 GSPITRISQ 268
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
Identities = 297/560 (53%), Positives = 381/560 (68%)
Query: 11 DGTID-FGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAV 69
DG+ID +GN P+ KK+TG WKACP+ILGNECCERLAYYGI NL+ Y EL++ NV A
Sbjct: 38 DGSIDIYGNPPS-KKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96
Query: 70 NNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPL-CD 128
++V W GTCY+ PLIGA +AD+Y GRYWTIASFS IY IGM +LT+SAS+ LKP C
Sbjct: 97 SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156
Query: 129 --KRNVCHP-TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185
+C P T +Q AVFF GLYLIALGTGGIKPCVSSFGADQFDD D E+ +K+SFFN
Sbjct: 157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216
Query: 186 WFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSP 245
WFYFSINIG+ ++++ LVW+Q NVGWG GF IP V M +++ SFF G+ LYR+QKPGGSP
Sbjct: 217 WFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSP 276
Query: 246 LTRICQ-----------------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPS 288
+TR+CQ S LYET + + GS K+ HT FLDKAAV +
Sbjct: 277 ITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEY 336
Query: 289 DCVKGSV-NAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHI 347
+ G+ N W+LCTVTQVEE K++IR+ PIWA GIV+S +YSQ+ TLFV QG +M+ I
Sbjct: 337 ESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMN-RI 395
Query: 348 DNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFA 407
SFEIP AS +FDT+ V+ +PIYDR +VP R+FTG G T LQR+ IGL +S+ +
Sbjct: 396 IRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLS 455
Query: 408 MLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAP 467
+ A +E VRL+ + + MSIFWQ+PQY ++G AEVF FIG++EFFY+++P
Sbjct: 456 IAAAAIVETVRLQLAQDF-------VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESP 508
Query: 468 DAMRXXXXXXXXXXXXXGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWXXXX 527
DAMR G+YLS+L++ +V F+ GK GW+PD+LN G+L YFFW
Sbjct: 509 DAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVS 568
Query: 528 XXXXXXXXXXMVARCYTYKK 547
++ +T KK
Sbjct: 569 LGLVNIPVYALICVKHTKKK 588
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 4.2e-145, Sum P(2) = 4.2e-145
Identities = 153/252 (60%), Positives = 184/252 (73%)
Query: 4 EEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQ 63
E ++ DG+ID P +K+ TG WKACP+I NECCERLAYYGI NL+ Y EL++
Sbjct: 21 EVKLYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHE 80
Query: 64 GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGL 123
NV A +V W GTCY+ PLIGA +ADAY GRYWTIA FS IY GM LT+SASV GL
Sbjct: 81 TNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGL 140
Query: 124 KPLCDKRNVCHP-TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182
KP ++C P T +Q V F GLYLIALGTGGIKPCVSSFGADQFD D +E+ +K+S
Sbjct: 141 KPAECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKAS 200
Query: 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPG 242
FFNWFYF+INIGA V+++ LVWIQ N GW GF IP V M +A +SFF G+ LYR+QKP
Sbjct: 201 FFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPR 260
Query: 243 GSPLTRICQSLL 254
GSP+T +CQ L+
Sbjct: 261 GSPITSVCQVLV 272
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 4.6e-120, Sum P(2) = 4.6e-120
Identities = 136/306 (44%), Positives = 182/306 (59%)
Query: 252 SLLY--ETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVK-GSV-NAWRLCTVTQVE 307
SLLY + DA ++ G KL HTK +SFLDKAA+ T D +K G + N WRL TV +VE
Sbjct: 269 SLLYFNDEIDAPISLGG--KLTHTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVE 326
Query: 308 EFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVI 367
E KS+IR+ PI A GI+ Y+Q GT + Q TM+ H+ NSF+IP+ S+S+F T++++
Sbjct: 327 ELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAML 386
Query: 368 FWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNY 427
+ YDR+ V +ARKFTG + G T L R+ IG VISI A L AG +E+ R +H
Sbjct: 387 TTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGL 446
Query: 428 YELKH--IPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRXXXXXXXXXXXXXG 485
+ H +P+S W +PQY + G AE F IG LEFFY+QAP++MR G
Sbjct: 447 LDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIG 506
Query: 486 NYLSTLLVNIVTDFSTRHGKPGWIPDN-LNYGNLHYFFWXXXXXXXXXXXXXXMVARCYT 544
NY+STLLV +V FS + W+PDN LN G L YF+W A+ YT
Sbjct: 507 NYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYT 566
Query: 545 YKKLVV 550
YK + V
Sbjct: 567 YKPVQV 572
|
|
| TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 217/551 (39%), Positives = 332/551 (60%)
Query: 7 IHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNV 66
++T DGT+D +P + +TG W+AC ++LG E ER+A+YGI +NLVNYL L++ +
Sbjct: 6 VYTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHEDTI 65
Query: 67 QAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPL 126
+V NV NWSG ++ P+ GA++AD+Y+GR+WT + S+IYV+GM +LTM+ +V L+P
Sbjct: 66 SSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLRPT 125
Query: 127 CDKRNVCHP-TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185
C+ VC+ + LQ+ F++ LY IA+G GG KP +S+FGADQFD Y EKK+K SFFN
Sbjct: 126 CEN-GVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKVSFFN 184
Query: 186 WFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSP 245
W+ FS +GAL A LV+IQ N+GWG G+GIP V + +++V F+ G+ YR++
Sbjct: 185 WWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVIKTDN 244
Query: 246 LTR-ICQSLLYETADAEFAVIGSH----KLDHTKQLSFLDKAAVETP--SDCVKGSVN-A 297
L + + Q + + + H +LD S TP K ++ +
Sbjct: 245 LAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAAIKTS 304
Query: 298 WRL-CTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSA 356
R+ CTVT+VE K ++ L+ IW + ++ S +++Q+ TLFV QG T+D I ++F+IP+A
Sbjct: 305 SRVPCTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNFQIPAA 364
Query: 357 SLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLEL 416
SL F T+S++ VP+YD+ VP RK TG+ G T LQR+ +G I I A+ A +E+
Sbjct: 365 SLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIASAVEV 424
Query: 417 VRLREVKK-HNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRXXXX 475
R+R +K+ H + +PMSIFW +PQY ++G +VF IG LEFFY+Q+P+ M+
Sbjct: 425 KRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEMQSLGT 484
Query: 476 XXXXXXXXXGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWXXXXXXXXXXXX 535
GN+L++ LV ++ +++ G WI +NLN L Y++
Sbjct: 485 TFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYYGFLVVISIVNMGL 544
Query: 536 XXMVARCYTYK 546
A Y YK
Sbjct: 545 FVWAASKYVYK 555
|
|
| TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1077 (384.2 bits), Expect = 5.5e-109, P = 5.5e-109
Identities = 228/574 (39%), Positives = 338/574 (58%)
Query: 1 MAAEE--DIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLR 58
M EE D +T DGT+D P + G WKAC +++ E ER+AYYGI++NL Y+
Sbjct: 1 MTVEEVGDDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMT 60
Query: 59 FELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSA 118
+L+QG V++ NNVTNW GT ++ P++GA++ DA LGRY T IY GM +LT+S
Sbjct: 61 TKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSV 120
Query: 119 SVHGLKPL-CDKRNV--CHPTG-LQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDE 174
++ G+KP C NV C LQ+AVFF LY +A+GTGG KP +S+ GADQFD +D
Sbjct: 121 TIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDP 180
Query: 175 AEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234
EK +K SFFNW+ FSI G L A + LV++Q NVGW G+G+P + +AI++ F G+
Sbjct: 181 KEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTP 240
Query: 235 LYRYQKPGGSPLTRICQSLL--YETADAEFA--VIGSHKLDHTKQLSFLDKAAVE---TP 287
YR++ P GSP T++ + ++ + A+A + H+L L + K A TP
Sbjct: 241 FYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELP---SLEYERKGAFPIHPTP 297
Query: 288 S----D--CVK-GSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQG 340
S D +K G+ + W LCT T+VEE K ++R+LP+ I V S + +Q+ TLFV QG
Sbjct: 298 SLRFLDRASLKTGTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQG 357
Query: 341 NTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIG 400
T+D + SF IP ASLS F T+S++ + +YDR+ V + RKFTG+ G T LQR+ IG
Sbjct: 358 TTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIG 417
Query: 401 LVISIFAMLTAGTLELVRLREVKKHNYYELKHI--PMSIFWQVPQYFIIGCAEVFTFIGQ 458
L+ I M+ A E RL+ H + P++IF +PQ+ ++G A+ F + +
Sbjct: 418 LIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAK 477
Query: 459 LEFFYEQAPDAMRXXXXXXXXXXXXXGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNL 518
LEFFY+QAP++M+ GN++S+ L++ V++ + + G+ GWI +NLN L
Sbjct: 478 LEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR-GWILNNLNESRL 536
Query: 519 HYFFWXXXXXXXXXXXXXXMVARCYTYKKLVVSS 552
Y++ +V + Y Y+ V S
Sbjct: 537 DYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDS 570
|
|
| TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 9.2e-107, Sum P(2) = 9.2e-107
Identities = 128/297 (43%), Positives = 179/297 (60%)
Query: 259 DAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVK----GS-VNAWRLCTVTQVEEFKSII 313
D+E G K+ HTK FLD+AA+ TP D + GS + WRLC+VTQVEE K ++
Sbjct: 279 DSETQYTGDKKILHTKGFRFLDRAAIVTPDDEAEKVESGSKYDPWRLCSVTQVEEVKCVL 338
Query: 314 RLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIY 373
RLLPIW I++S V++QM +LFV+QG M +I N F IP++S+S FD +SV F++ Y
Sbjct: 339 RLLPIWLCTILYSVVFTQMASLFVVQGAAMKTNIKN-FRIPASSMSSFDILSVAFFIFAY 397
Query: 374 DRLIVPLARKF--TGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELK 431
R + PL + T G T+LQR+ IGLVI+I AM++AG +E+ RL+ + + +
Sbjct: 398 RRFLDPLFARLNKTERNKGLTELQRMGIGLVIAIMAMISAGIVEIHRLKNKEPESATSIS 457
Query: 432 HIP-MSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRXXXXXXXXXXXXXGNYLST 490
+SIFWQVPQY +IG +EVF ++GQLEFF QAP ++ GNY+S+
Sbjct: 458 SSSTLSIFWQVPQYMLIGASEVFMYVGQLEFFNSQAPTGLKSFASALCMASISLGNYVSS 517
Query: 491 LLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWXXXXXXXXXXXXXXMVARCYTYKK 547
LLV+IV ST GWIP+NLN G+L F++ + A+ Y Y K
Sbjct: 518 LLVSIVMKISTTDDVHGWIPENLNKGHLERFYFLLAGLTAADFVVYLICAKWYKYIK 574
|
|
| TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 3.1e-106, Sum P(2) = 3.1e-106
Identities = 117/260 (45%), Positives = 163/260 (62%)
Query: 269 KLDHTKQLSFLDKAAVETPSDC---VKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVF 325
++ HT + FLDKAA T D + SVN WRLC VTQVEE K I+RL+PIW I++
Sbjct: 304 RIVHTDEFKFLDKAAYITARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIY 363
Query: 326 SAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKF- 384
S V++QM +LFV QG M+ + + F+IP AS+S FD +SV ++ +Y R++ P+A +F
Sbjct: 364 SVVFTQMASLFVEQGAAMNTSVSD-FKIPPASMSSFDILSVALFIFLYRRVLEPVANRFK 422
Query: 385 -TGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQ 443
G K G T+L R+ IGLVI++ AM+ AG +E RL+ K + +SIFWQ PQ
Sbjct: 423 KNGSK-GITELHRMGIGLVIAVIAMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAPQ 481
Query: 444 YFIIGCAEVFTFIGQLEFFYEQAPDAMRXXXXXXXXXXXXXGNYLSTLLVNIVTDFSTRH 503
Y +IG +EVF ++GQLEFF Q PD ++ GN++S+LLV +V ST
Sbjct: 482 YSLIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTED 541
Query: 504 GKPGWIPDNLNYGNLHYFFW 523
PGWIP NLN G+L F++
Sbjct: 542 HMPGWIPRNLNKGHLDRFYF 561
|
|
| TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 204/543 (37%), Positives = 314/543 (57%)
Query: 13 TIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNV 72
T+D+ NKPAVK +G W++ +I+G E ER AYYGI++NL+ YL L Q A NV
Sbjct: 18 TVDYRNKPAVKSSSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANV 77
Query: 73 TNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNV 132
WSGT ++PL+GAF+AD++LGR+ TI + S +Y++G+ +LT+SA + + + +
Sbjct: 78 NAWSGTASLLPLLGAFVADSFLGRFRTILAASALYIVGLGVLTLSAMIPSDCKVSNLLSS 137
Query: 133 CHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192
C P Q+ FF LYL+AL GG KPCV +FGADQFD+ + E K KSSFFNW+YF +
Sbjct: 138 CSPR-FQVITFFSALYLVALAQGGHKPCVQAFGADQFDEKEPEECKAKSSFFNWWYFGMC 196
Query: 193 IGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRY--QKPGGSPLTRIC 250
G L L +IQ N+ W GFGIP +AM +A+V G+ YR+ ++ SP RI
Sbjct: 197 FGTLTTLWVLNYIQDNLSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQSPFVRIG 256
Query: 251 QSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFK 310
+Y A ++V ++L + ++ + S K V C++ ++EE K
Sbjct: 257 N--VYVAAVKNWSVSALDVAAAEERLGLVSCSSSQQFSFLNKALVAKNGSCSIDELEEAK 314
Query: 311 SIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWV 370
S++RL PIW +V++ V++Q T F QG TM+ I ++I A+L F ++S++ ++
Sbjct: 315 SVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATLQSFISLSIVIFI 374
Query: 371 PIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYEL 430
PIYDR+++P+AR FT G T LQRI G+ +S AM+ A +E+ RL+ + +
Sbjct: 375 PIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVDS 434
Query: 431 KH--IPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRXXXXXXXXXXXXXGNYL 488
+PMS++W VPQY + G +VF +G EFFY+Q P+ +R GN+L
Sbjct: 435 PDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLALYLSIFGIGNFL 494
Query: 489 STLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWXXXXXXXXXXXXXXMVARCYTYKKL 548
S+ +++I+ +++ G+ W +NLN +L YF+W VA+ Y K+L
Sbjct: 495 SSFMISIIEKATSQSGQASWFANNLNQAHLDYFYWLLACLSFIGLASYLYVAKSYVSKRL 554
Query: 549 VVS 551
S
Sbjct: 555 DTS 557
|
|
| TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 9.5e-103, Sum P(2) = 9.5e-103
Identities = 108/239 (45%), Positives = 157/239 (65%)
Query: 15 DFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTN 74
DF +PA + +TG W + IL E ERL GI NLV YL ++ GN A N VTN
Sbjct: 17 DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTN 76
Query: 75 WSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKP-LCDKRNVC 133
+ GT +++ L+G F+AD +LGRY TIA F+ I G++ILT+S + GL+P C+
Sbjct: 77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSS 136
Query: 134 H---PTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190
H +G+Q+ V ++ LYL ALGTGG+K VS FG+DQFD+ + E+ K + FFN F+F
Sbjct: 137 HCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFC 196
Query: 191 INIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRI 249
IN+G+L+A + LV++Q +VG WG+GI A A+ +A+ F AG+ YR++K GSP+T++
Sbjct: 197 INVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQV 255
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M390 | PTR1_ARATH | No assigned EC number | 0.6954 | 0.9945 | 0.9649 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 553 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 1e-100 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 1e-51 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-40 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 3e-22 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 4e-12 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 2e-10 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 4e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-07 | |
| PRK10207 | 489 | PRK10207, PRK10207, dipeptide/tripeptide permease | 5e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-04 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 0.001 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 307 bits (789), Expect = e-100
Identities = 142/406 (34%), Positives = 195/406 (48%), Gaps = 54/406 (13%)
Query: 97 YWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGG 156
+ TI SIIY IG +LT+ A L P+ Q+A+F++GLYLIALGTGG
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPV------------QVALFYIGLYLIALGTGG 48
Query: 157 IKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFG 216
IKP VS+FGADQFD+ ++ FF+WFYFSIN G+L+A ++Q NVG+ GFG
Sbjct: 49 IKPNVSAFGADQFDETQ---DPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFG 105
Query: 217 IPAVAMAIAVVSFFAGSRLYR-YQKPGGSPLTRI------------------CQSLLYET 257
+PAV M +A++ F GSR Y+ PGGSP T LY
Sbjct: 106 LPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWA 165
Query: 258 ADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLP 317
+ S HT+ ++ + V ++I+ +LP
Sbjct: 166 LEKYNKRSISQTKVHTR-VAVIFIPL----------PKFWALFDQQGSVWLLQAILLMLP 214
Query: 318 IWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLI 377
IWA I+ +++Q+ TL V Q TMD I FEIP AS F+ ++V+ +PI D L+
Sbjct: 215 IWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLV 274
Query: 378 VPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYE-LKHIPMS 436
PL R K G T QR +G+ I I A A +E R R +P+
Sbjct: 275 YPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLF 330
Query: 437 IFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTA 482
I W +P+ FI G G LEF + P +M SL + LS A
Sbjct: 331 ILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAAA 372
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 1e-51
Identities = 112/475 (23%), Positives = 177/475 (37%), Gaps = 64/475 (13%)
Query: 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNV----QAVNNVTNWSGTCYVMPLI 85
+ I E ER +YYG+ L+ YL ++L G A + + Y+ P+I
Sbjct: 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPII 80
Query: 86 GAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFV 145
G +LAD LG TI +I+ IG +L +S+ V P G ++
Sbjct: 81 GGWLADRVLGTRRTIVLGAILMAIGHLVLAISS-------------VSGPGG-----LYI 122
Query: 146 GLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWI 205
GL LI +GTG KP +SS + + + ++ F FY INIG+L+A +
Sbjct: 123 GLALIIVGTGLFKPNISSLLGELY----PKDDPRRDGGFTLFYMGINIGSLIAPIITGLL 178
Query: 206 QTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRIC-QSLLYETADAEFAV 264
N GW GFG+ AV M I +V F G R + GG P + L +
Sbjct: 179 AINYGWHVGFGLAAVGMIIGLVIFLLGRR--HVKGIGGVPDPNPLSFNFLLPVLGGLVVM 236
Query: 265 I------GSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPI 318
I S + + +E + ++ +P+
Sbjct: 237 ILAALLTLLLNQ---NTFSGVLLVISILIAIIYFAEAFRSPKVF----DERRRLLAAIPL 289
Query: 319 WAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIV 378
+ ++F A+Y QMG+ L + FE+P A + +I + PI L
Sbjct: 290 FLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWT 349
Query: 379 PLARKF----TGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIP 434
L R T K + L F +L + ++
Sbjct: 350 KLGRGNKQPSTPIKFAL------GLILAGLGFLILLLAGI------------WFGGPSGL 391
Query: 435 MSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLS 489
+S++W V Y + E+F L + AP A++S A+ T A G L
Sbjct: 392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLG 446
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 2e-40
Identities = 112/378 (29%), Positives = 189/378 (50%), Gaps = 46/378 (12%)
Query: 46 YYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI 105
YYG+ T LV YL L A N ++ CY+ PLIGA +AD++LG++ TI S+
Sbjct: 3 YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62
Query: 106 IYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFG 165
+YV+G + ++ A PL D A+ VGL LIALGTGGIKPCVS+FG
Sbjct: 63 VYVVGHALASLGAVPSLGHPLHD------------ALSLVGLALIALGTGGIKPCVSAFG 110
Query: 166 ADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVG-------WGWGFGIP 218
DQF+ E + + FF++FYF+IN G+L + ++ +VG + FG+P
Sbjct: 111 GDQFE---ERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVP 167
Query: 219 AVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSF 278
+ M +A++ F GS++Y+ + P G+ +++ ++ A + + +L +
Sbjct: 168 GILMTLALIVFSMGSKMYKKKPPVGNIVSK----VMKCIVFA-LKKRFRTRSEDWPRLHW 222
Query: 279 LDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVL 338
LD AA + + K ++R+L ++ +F A++ Q G+ + L
Sbjct: 223 LDWAAPKYLIR---------------MIRSTKRLLRVLFLFIPLPMFWALFDQQGSRWTL 267
Query: 339 QGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIA 398
Q MD + F I + + + V+ VPI+D ++ P K FT L+++A
Sbjct: 268 QATRMDGDV-GLFPIQPDQMQAVNPLLVLILVPIFDYVVYPALAKC---GTRFTSLRKMA 323
Query: 399 IGLVISIFAMLTAGTLEL 416
+G++++ A A L+
Sbjct: 324 VGMLLAALAFAVAALLQN 341
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 3e-22
Identities = 101/466 (21%), Positives = 167/466 (35%), Gaps = 60/466 (12%)
Query: 39 ECCERLAYYGINTNLVNYLRFE--LNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGR 96
E ER +YYG+ L YL + L QA +S Y++ +G + D G
Sbjct: 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78
Query: 97 YWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGG 156
T+ I+ ++G +L MS F GL IA+G+G
Sbjct: 79 KKTMVLGGIVLMLGHFMLAMSIYPDL--------------------IFYGLGTIAVGSGL 118
Query: 157 IKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFG 216
K SS Y+ + ++ F FY SINIG+ ++ I N G+ GF
Sbjct: 119 FKANPSSMVGKL---YERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFN 175
Query: 217 IPAVAMAIAVVSFFAGSRLYRYQKPGGSPL-------TRICQSLLYETADAEFAVIGSHK 269
+ AV M I +++FFAG + R PL ++ +LL A F H
Sbjct: 176 LAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHH 235
Query: 270 LDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVE--EFKSIIRLLPIWAIGIVFSA 327
+ L AV +RL +++ + + ++ +VF
Sbjct: 236 VVIANILLMTVTLAVIIF---------FFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWV 286
Query: 328 VYSQMGT-LFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTG 386
+Y+QM T L N M H +P + V+ P+ + L RK
Sbjct: 287 LYAQMPTSLNFFADNNMH-HEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK--- 342
Query: 387 HKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFI 446
K+ T L + +G++ + LT + + S ++ V Y
Sbjct: 343 GKDPTTPL-KFTLGMLFCGASFLTF----------AASIWFADAGG-LTSPWFMVLIYLF 390
Query: 447 IGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLL 492
E+ L ++ + AP + + A+G+ L L
Sbjct: 391 QTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYL 436
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 4e-12
Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 23/219 (10%)
Query: 22 VKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYV 81
+ K +A Y++ + E ++YG+ L+ YL +L + A + + YV
Sbjct: 1 MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYV 60
Query: 82 MPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIA 141
P++G FLAD LG + +++ IG +L S HP+ L
Sbjct: 61 TPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI--------------HPSFL--- 103
Query: 142 VFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASC 201
++ L +I G G K VS + + E ++ F+ Y + N+G+++A
Sbjct: 104 --YLSLAIIVCGYGLFKSNVSCLLGELY----EPTDPRRDGGFSLMYAAGNVGSIIAPIA 157
Query: 202 LVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQK 240
+ Q W GFG+ AV M +V F G+R + + +
Sbjct: 158 CGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTR 196
|
Length = 493 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 23/200 (11%)
Query: 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFL 89
KA I E ER YYG+ + YL +L ++ +++S Y + IG +L
Sbjct: 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWL 80
Query: 90 ADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYL 149
D LG I +I+ IG ++ S G + ++G+
Sbjct: 81 GDKVLGTKRVIMLGAIVLAIGYALVAWS-------------------GHDAGIVYMGMAT 121
Query: 150 IALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNV 209
IA+G G K SS + ++ D + F +Y SINIG+ + W+
Sbjct: 122 IAVGNGLFKANPSSLLSTCYEKDD----PRLDGAFTMYYMSINIGSFFSMLATPWLAAKY 177
Query: 210 GWGWGFGIPAVAMAIAVVSF 229
GW F + V M I VV+F
Sbjct: 178 GWSVAFALSVVGMLITVVNF 197
|
Length = 500 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 435 MSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVN 494
+SI WQ+PQY + EV + LEF Y QAP M+S+ AL L T A+GN ++V
Sbjct: 550 VSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN----IIVL 605
Query: 495 IVTDFS 500
I+ +F
Sbjct: 606 IIAEFE 611
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 28/191 (14%)
Query: 40 CCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWT 99
L ++ L +L QA V+ +S + L+ +L+D + GR
Sbjct: 9 FLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRV 66
Query: 100 IASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKP 159
+ +++ +G +L ++S + + VG +L+ LG G + P
Sbjct: 67 LLLGLLLFALGSLLLAFASS--------------------LWLLLVGRFLLGLGGGALYP 106
Query: 160 CVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPA 219
++ A+ F K++ F +GAL+ + ++GW W F I A
Sbjct: 107 AAAALIAEWF------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160
Query: 220 VAMAIAVVSFF 230
+ + +
Sbjct: 161 ILGLLLALLLL 171
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 23/193 (11%)
Query: 39 ECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYW 98
E ER YYG+ L + +L QA ++ Y + IG ++ D LG
Sbjct: 23 ELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR 82
Query: 99 TIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIK 158
TI +I+ IG + MS LKP + F+ L IA+G G K
Sbjct: 83 TIVLGAIVLAIGYFMTGMSL----LKP---------------DLIFIALGTIAVGNGLFK 123
Query: 159 PCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIP 218
+S + + D + F FY SINIG+L++ S I G+ + +
Sbjct: 124 ANPASLLSKCYPPKD----PRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLC 179
Query: 219 AVAMAIAVVSFFA 231
+ IA++ +FA
Sbjct: 180 GAGLIIALLVYFA 192
|
Length = 489 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 26/187 (13%)
Query: 44 LAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASF 103
YYG+ T L YL+ L +A ++ + + L+G L+D R +
Sbjct: 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG 248
Query: 104 SIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSS 163
++ +G+ +L ++ S+ A+ V L L+ G G P + +
Sbjct: 249 LLLAALGLLLLALAPSL--------------------ALLLVALLLLGFGLGFAFPALLT 288
Query: 164 FGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMA 223
++ + + + F ++G + + G+G F I A
Sbjct: 289 LASELA------PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342
Query: 224 IAVVSFF 230
+A +
Sbjct: 343 LAALLLL 349
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 27/192 (14%)
Query: 40 CCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWT 99
L + L YL +L + +T +S + + L+D + GR
Sbjct: 6 FLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRV 64
Query: 100 IASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKP 159
+ +++ +G+ +L ++S + + V L LG G + P
Sbjct: 65 LLIGLLLFALGLLLLLFASS--------------------LWLLLVLRVLQGLGGGALFP 104
Query: 160 CVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPA 219
++ AD F +++ +GA + + + GW F I A
Sbjct: 105 AAAALIADWF------PPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILA 158
Query: 220 VAMAIAVVSFFA 231
+ +A V
Sbjct: 159 ILALLAAVLAAL 170
|
Length = 346 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 37/195 (18%)
Query: 45 AYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTC----YVMPLIGAFLADA---YLGRY 97
G L+ + + ++ A T SG V LIG+ A GR
Sbjct: 17 GVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRK 76
Query: 98 WTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGI 157
++ ++++VIG L + G + VG ++ LG GGI
Sbjct: 77 KSLLIGNVLFVIG--ALLQGFA----------------KGKSFYMLIVGRVIVGLGVGGI 118
Query: 158 KPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASC---LVWIQTNVGWGWG 214
V + + A KK + + + + I G LVAA L + GW
Sbjct: 119 SVLVPMY-ISEI-----APKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 215 FG---IPAVAMAIAV 226
G +PA+ + I +
Sbjct: 173 LGLQFVPAILLLIGL 187
|
Length = 449 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.93 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.93 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.92 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.92 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.91 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.91 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.91 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.9 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.9 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.9 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.9 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.9 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.9 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.9 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.9 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.9 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.9 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.89 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.89 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.89 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.89 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.89 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.88 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.88 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.88 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.88 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.87 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.87 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.87 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.87 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.87 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.87 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.87 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.86 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.85 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.85 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.85 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.85 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.85 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.85 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.84 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.84 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.84 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.83 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.83 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.83 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.83 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.82 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.82 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.81 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.81 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.8 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.8 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.79 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.79 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.79 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.77 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.75 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.75 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.74 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.74 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.73 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.73 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.73 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.73 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.72 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.72 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.71 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.71 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.69 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.68 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.68 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.68 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.67 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.66 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.63 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.62 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.61 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.56 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.5 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.48 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.47 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.47 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.45 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.45 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.44 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.42 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.42 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.42 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.41 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.4 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.4 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.39 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.37 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.36 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.35 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.35 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.35 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.34 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.34 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.33 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.32 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.3 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.3 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.3 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.29 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.29 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.29 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.29 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.29 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.28 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.28 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.28 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.27 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.27 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.25 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.24 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.24 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.2 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.2 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.2 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.19 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.19 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.19 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.18 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.18 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.18 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.18 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.17 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.17 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.16 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.15 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.14 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.13 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.12 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.11 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.11 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.1 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.1 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.09 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.06 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.06 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.05 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.05 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.03 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.02 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.02 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.02 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.01 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.99 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.97 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.95 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.94 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.93 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.93 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.93 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.89 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.84 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.83 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.83 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.81 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.81 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.8 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.8 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.79 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.77 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.76 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.76 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.75 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.71 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.7 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.69 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.67 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.64 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.61 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.6 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.59 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.52 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.46 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.42 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.36 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.35 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.33 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.31 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.29 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.28 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.23 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.21 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.18 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.18 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.18 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.15 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.09 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.08 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.08 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.07 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.04 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.96 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.95 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.92 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.89 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.76 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.62 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.57 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.51 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.48 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.39 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.31 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.04 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.03 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 96.97 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.79 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.69 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.54 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.48 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.21 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.08 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.06 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.46 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.2 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.01 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 94.97 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 94.96 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 94.73 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.54 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 94.09 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.08 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 93.78 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.56 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 93.47 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.18 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 92.46 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 91.95 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 91.94 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 91.23 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 89.51 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 89.47 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 88.29 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 86.82 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 83.17 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=371.26 Aligned_cols=520 Identities=51% Similarity=0.903 Sum_probs=463.2
Q ss_pred cCCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHH
Q 008792 25 ETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFS 104 (553)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~ 104 (553)
++..|+.+..++..+.+++++++++...+..|+...++.+...+...+..+.......++++++++|.|.||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCC-CC---CCCCCcCC-CchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhh
Q 008792 105 IIYVIGMTILTMSASVHGLKP-LC---DKRNVCHP-TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKK 179 (553)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (553)
++..++..++.+....+.+.| .| .+.++|.+ .......++.++.+.++|.|+..|+..++.+|++++..+.++..
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 999999999998888888777 55 67778888 55678889999999999999999999999999999777777777
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccc
Q 008792 180 KSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETAD 259 (553)
Q Consensus 180 r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (553)
+...|+++++..++|..++..+..++++..+|.+.|.++.+++++++++++...+.+++++|.+++..+..+.+......
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k 271 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK 271 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999888877765443322
Q ss_pred hhh-----------hhccccccccCCccchhhhccccCCCCcCCC-CCCccccccchhhhhHHHHHhHHHHHHHHHHHHH
Q 008792 260 AEF-----------AVIGSHKLDHTKQLSFLDKAAVETPSDCVKG-SVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSA 327 (553)
Q Consensus 260 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (553)
... ........++.++++++|+++...+.+.... ..++|+.+..+++++.|.+++.++++....+++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~ 351 (571)
T KOG1237|consen 272 RKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYST 351 (571)
T ss_pred HhccCCCcchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHH
Confidence 110 1111233445678899999888776655222 5678999999999999999999999999999999
Q ss_pred hhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHH
Q 008792 328 VYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFA 407 (553)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 407 (553)
.+.|+.++++.|+..++++.++++.+|++....+..+...+..|+.+++..|+.||.++++.+++.++++.+|+++.+++
T Consensus 352 ~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~s 431 (571)
T KOG1237|consen 352 VYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILS 431 (571)
T ss_pred HHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHH
Confidence 99999999999999999999845999999999999999999999999999999999998877899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHH
Q 008792 408 MLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNY 487 (553)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ 487 (553)
+...+..+..+.+++.+ ..++.++.+.+|+++++++.|++|.+..+...++.++++|++||+.+++++.+..++|+.
T Consensus 432 m~~aa~vE~krl~~~~~---~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~ 508 (571)
T KOG1237|consen 432 MAVAGIVEAKRLKTAVS---LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNY 508 (571)
T ss_pred HHHHHHHHHHHhhhhhh---ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888776 122346789999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhhhhccccccCCCCCCCcc-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008792 488 LSTLLVNIVTDFSTRHGKPGWIP-DNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKLV 549 (553)
Q Consensus 488 ig~~l~~~i~~~~~~~~~~~w~~-~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~~ 549 (553)
++..+...+...++. ..+|+. +++|.+....+||+.++...+....+++..+++++++.+
T Consensus 509 lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 509 LSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred HHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence 999999988776544 447999 999999999999999999999999999999988777654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=319.33 Aligned_cols=470 Identities=24% Similarity=0.322 Sum_probs=355.0
Q ss_pred CcccCCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcC----CchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchH
Q 008792 22 VKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELN----QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRY 97 (553)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~----~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~ 97 (553)
.+..-+++|.++.++..++.|+++||++...+..|+..+++ +|.+++..+.+.|....++.++++||++||++|+|
T Consensus 13 ~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~ 92 (498)
T COG3104 13 EMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR 92 (498)
T ss_pred ccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 33445678999999999999999999999999999998887 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhH
Q 008792 98 WTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEK 177 (553)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (553)
|++.++.+++++|-++++... ......++++..+.++|.|.+.|+..++++|++|+++++
T Consensus 93 ~tI~lGail~~iGh~~L~~~~------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-- 152 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISS------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-- 152 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccc------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc--
Confidence 999999999999999998762 023566899999999999999999999999999999987
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHH----hh
Q 008792 178 KKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQ----SL 253 (553)
Q Consensus 178 ~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 253 (553)
|-.+|+++|++.|+|+.++|.+.+++.+..||+..|..+++-+.++++.++..+++........++.....+ .+
T Consensus 153 --rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 230 (498)
T COG3104 153 --RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVL 230 (498)
T ss_pred --cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhH
Confidence 999999999999999999999999999999999999999999999999998888776654432222111111 00
Q ss_pred hhhccchhhhhccccccccCCccchh-hhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccc
Q 008792 254 LYETADAEFAVIGSHKLDHTKQLSFL-DKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQM 332 (553)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (553)
.......-.. . .......+..+.. .......+..+- ....++ .+.. +++||++..+.+++..++||..++|+
T Consensus 231 ~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~~i~~~~~~~-~~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~ 303 (498)
T COG3104 231 GGLVVMILAA-L-LTLLLNQNTFSGVLLVISILIAIIYF-AEAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQM 303 (498)
T ss_pred HHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000000000 0 0000000000000 000000000000 000111 1112 67899999999999999999999999
Q ss_pred cceEEeeec-ccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008792 333 GTLFVLQGN-TMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTA 411 (553)
Q Consensus 333 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 411 (553)
++.+..+.. ..+++.. ++.+++++++.+|.+.+++..|+.+.++.++.++. + ..+.+.+...|+.+++.+++.+
T Consensus 304 ~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~---~ps~~~KFalGl~l~g~~fl~l 378 (498)
T COG3104 304 GSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-K---QPSTPIKFALGLILAGLGFLIL 378 (498)
T ss_pred cchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-C---CCCcchHHHHHHHHHHHHHHHH
Confidence 987766653 4455534 58899999999999999999999999888877664 2 2677888999999999999887
Q ss_pred HHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhH
Q 008792 412 GTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTL 491 (553)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~ 491 (553)
...... . .+++++.+.+|+++.+++.++||.+..|+..+++++.+|++..+.++|++......|+.++..
T Consensus 379 ~~~~~~----~------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~ 448 (498)
T COG3104 379 LLAGIW----F------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQ 448 (498)
T ss_pred HHHHHh----h------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhce
Confidence 765221 0 112456899999999999999999999999999999999999999999999999999988888
Q ss_pred hhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008792 492 LVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTY 545 (553)
Q Consensus 492 l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~ 545 (553)
+.+...+ +. +..+......+|+.+++..++..+..+...++.++
T Consensus 449 va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r 492 (498)
T COG3104 449 VAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR 492 (498)
T ss_pred ecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7763221 00 00111223456888888888888777777665543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=312.45 Aligned_cols=476 Identities=18% Similarity=0.223 Sum_probs=329.2
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHH
Q 008792 26 TGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI 105 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 105 (553)
+++||.++.+++.++++++++|++.++++.|+++++|++..+++++.+.+....++..+++|+++||++||||+++++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999993399999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 106 IYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
++.++.++++++.+ ....++++|+++++|.|...|+..++++|++|+++++ |.++++
T Consensus 90 ~~~~g~~~~~~~~~-------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~ 146 (489)
T PRK10207 90 VLAIGYFMTGMSLL-------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFT 146 (489)
T ss_pred HHHHHHHHHHHhcc-------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchh
Confidence 99999999987621 1233568899999999999999999999999987633 688999
Q ss_pred HHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccC--CCCChHHHHHHhhhhhccchhhh
Q 008792 186 WFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQK--PGGSPLTRICQSLLYETADAEFA 263 (553)
Q Consensus 186 ~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 263 (553)
+++++.|+|..+||.++|++.++.|||+.|++..+..+++++.+...++..++.+ |++.+.+. .+..+....-.-..
T Consensus 147 ~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~~~ 225 (489)
T PRK10207 147 LFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSF-SKLLLVLLGSVVMI 225 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhh-hhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987766666666655544433321 21211111 11000000000000
Q ss_pred hccccccccCCccchhh-hccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeec-
Q 008792 264 VIGSHKLDHTKQLSFLD-KAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGN- 341 (553)
Q Consensus 264 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 341 (553)
.......+......... ....... ....+++.+.+ ..++++.+..+.++....++|..+.|....+..+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~i~~------~~f~~~~~~~~-~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~ 298 (489)
T PRK10207 226 FVCAWLMHNVEVANLVLIVLSIVVT------IIFFREAFKLD-KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAIN 298 (489)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00000000000000000 0000000 00000000111 133455555666677788888888888665444432
Q ss_pred ccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008792 342 TMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLRE 421 (553)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~ 421 (553)
..+.... ++.++++.++.+|.+.+++..|+.+++..++.+| +...++..++.+|+++.+++++.+.......
T Consensus 299 ~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r----~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~--- 370 (489)
T PRK10207 299 NVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLGSK----GKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF--- 370 (489)
T ss_pred hcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 3344444 6677888888899999989999988755444433 3236788889999999998887654322110
Q ss_pred hhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhcccccc
Q 008792 422 VKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFST 501 (553)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~ 501 (553)
... +...+.||+++.+++.++||.+..|+.++++++.+|++++|.++|++++..++|+.+|..+.........
T Consensus 371 ~~~-------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~ 443 (489)
T PRK10207 371 ADA-------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN 443 (489)
T ss_pred cCC-------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 000 1135678899999999999999999999999999999999999999999999999999888865531110
Q ss_pred CCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCC
Q 008792 502 RHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKLVVSSH 553 (553)
Q Consensus 502 ~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 553 (553)
. ..+. ...+.+..+|...++.+++..+++++..|+.+|.-+.+++|
T Consensus 444 ~-----~~~~-~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 489 (489)
T PRK10207 444 I-----TDPL-ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTPESH 489 (489)
T ss_pred c-----ccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 0 0000 01123566788888888888888888777776654544443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=304.45 Aligned_cols=455 Identities=22% Similarity=0.273 Sum_probs=325.1
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhh--cCCchhhhhhHHHHHHHHHhhhhhhHHHHhhh-ccchHHHHHH
Q 008792 26 TGTWKACPYILGNECCERLAYYGINTNLVNYLRFE--LNQGNVQAVNNVTNWSGTCYVMPLIGAFLADA-YLGRYWTIAS 102 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Gr~~~~~~ 102 (553)
.+++|.++.+++.++++++++|++.++++.|+++. +|.+..+++++.+.+.++..++++++|+++|| + |||+++.+
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~-G~~~~l~~ 84 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVW-GTKKTMVL 84 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc-chHHHHHH
Confidence 35678889999999999999999999999999887 99999999999999999999999999999999 6 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhh
Q 008792 103 FSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182 (553)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 182 (553)
+.++.+++..+++++ .+.+.+++++++.|++.|...|+..++++|++|++++. +|++
T Consensus 85 ~~~~~~~g~~~~~~~--------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~ 141 (475)
T TIGR00924 85 GGIVLMLGHFMLAMS--------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDG 141 (475)
T ss_pred HHHHHHHHHHHHHhc--------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccc
Confidence 999999999888876 23566788999999999999999999999999876421 1888
Q ss_pred hHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHH----Hhhhhhcc
Q 008792 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRIC----QSLLYETA 258 (553)
Q Consensus 183 ~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 258 (553)
++++++++.|+|..+||.+++++.+..||++.|++.++..+++++.++...+..++.++++++.+... +.......
T Consensus 142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (475)
T TIGR00924 142 GFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLA 221 (475)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHH
Confidence 99999999999999999999999998899999999887777766666555544433222221111000 00000000
Q ss_pred chhhhhccccccccCCccchhhh----ccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccc
Q 008792 259 DAEFAVIGSHKLDHTKQLSFLDK----AAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGT 334 (553)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (553)
.............+....+.... ........ ...++ ..+. .++++....+.++....++|..+.|..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s 293 (475)
T TIGR00924 222 ALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFR---LAFKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPT 293 (475)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---HHHhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00000000000000000000000 00000000 00000 0111 2334445567788888899999998887
Q ss_pred eEEee-ecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008792 335 LFVLQ-GNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGT 413 (553)
Q Consensus 335 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~ 413 (553)
.+..+ ...++.+.+ ++.++++.+..+|++.+++.+|+.+.+..++.|| +...+...++.+|+++.+++++..+.
T Consensus 294 ~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~~~~~k~~~G~~l~~~~~~~~~~ 368 (475)
T TIGR00924 294 SLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDPTTPLKFTLGMLFCGASFLTFAA 368 (475)
T ss_pred HHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 54432 234555555 6778999999999999999999988765444444 22245666789999999999988776
Q ss_pred HHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhh
Q 008792 414 LELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLV 493 (553)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~ 493 (553)
... ..++ ....+.||+++.+++.++||.+..|..++++.+.+|++.||+++|++.....+|+.+++.+.
T Consensus 369 ~~~----~~~~-------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~ 437 (475)
T TIGR00924 369 SIW----FADA-------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLA 437 (475)
T ss_pred HHh----hcCC-------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 421 1111 12368899999999999999999999999999999999999999999999999999999988
Q ss_pred hhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008792 494 NIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYT 544 (553)
Q Consensus 494 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~ 544 (553)
+...+. .+...+|...++++++..+++++..|+.+
T Consensus 438 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 438 TFGAVP----------------QGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHhcc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765432 12234567777777777777766666554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=299.30 Aligned_cols=455 Identities=20% Similarity=0.288 Sum_probs=321.0
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
+++|.++..++.+++++.++|++.++++.|+++++|.+..+++++.+.+........+++|+++||++|||++++.+.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56678999999999999999999999999999999999999998888887777777889999999933999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.+++..+++++. .+.+.++++++++|++.|...|+..++++|++|+++++ |..++++
T Consensus 98 ~~ig~~l~~~~~-------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~ 154 (500)
T PRK09584 98 LAIGYALVAWSG-------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTM 154 (500)
T ss_pred HHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchH
Confidence 999988887651 12455678899999999999999999999999876533 6678899
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeecc--CCCCChHHHHHHhhh-------hhc
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQ--KPGGSPLTRICQSLL-------YET 257 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~ 257 (553)
++++.++|+.+||.++|++.++.||++.|++.++..+++++.++...+..+++ +++.++.+.. +..+ ...
T Consensus 155 ~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 233 (500)
T PRK09584 155 YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYR-KLLLTIVGVVALIA 233 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchh-hHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877777665554443333322 1211111110 0000 000
Q ss_pred cchhhhhccccccccCCccchh-hhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceE
Q 008792 258 ADAEFAVIGSHKLDHTKQLSFL-DKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLF 336 (553)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (553)
... . ...+.+..+.. ......... ........ ....++++.+..+.+++....+|..+.|.+..+
T Consensus 234 ~~~-~------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l 299 (500)
T PRK09584 234 IAT-W------LLHNQEIARMALGVVALGIVV------IFGKEAFA-MKGAARRKMIVAFILMLEAIIFFVLYSQMPTSL 299 (500)
T ss_pred HHH-H------HHhcchHHHHHHHHHHHHHHH------HHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 000 0 00000000000 000000000 00000001 112345566666777788889999999999877
Q ss_pred Eeeec-ccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008792 337 VLQGN-TMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLE 415 (553)
Q Consensus 337 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~ 415 (553)
..+.. ..+.+.. ++.++++.++.+|++.+++.+|+.+.+. +|..+| .+..+++.+|+++.+++++.+....
T Consensus 300 ~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~----~~l~~r---~~~~~~~~~G~~l~~l~f~~l~~~~ 371 (500)
T PRK09584 300 NFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIY----NKMGDR---LPMPHKFAIGMVLCSGAFLVLPLGA 371 (500)
T ss_pred HHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHH----HHhCcC---CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66543 2344444 6778899999999999999999988854 444444 5677899999999999999887753
Q ss_pred HHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008792 416 LVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNI 495 (553)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~ 495 (553)
.. .+++ ...+.+|+++.+++.++||.+..|...+++.+.+|+++||+++|++.+...+|+.++..+.+.
T Consensus 372 ~~----~~~~-------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~ 440 (500)
T PRK09584 372 KF----ANDA-------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANL 440 (500)
T ss_pred Hh----cCCC-------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1222 235778999999999999999999999999999999999999999999999999888887754
Q ss_pred ccccccCCCCCCCccCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008792 496 VTDFSTRHGKPGWIPDNL-NYGNLHYFFWLLALLSVLNLGVYLMVARCYTY 545 (553)
Q Consensus 496 i~~~~~~~~~~~w~~~~~-~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~ 545 (553)
...... ..|.. ..+++..+|...++++++.++++++..|+.+|
T Consensus 441 ~~~~~~-------~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 441 MAVPDN-------VTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred hccccc-------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321000 00000 11235667888887777776666666665443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=292.40 Aligned_cols=424 Identities=18% Similarity=0.255 Sum_probs=306.5
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
+++|.++..++.++.+++++|++..++|.|+++.+|++..+++.+.+.+....+++++++|+++||+.||||+++++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
..++.++++... .+...++++..+..+|.|...++.+++++|++|+++++ |.+++++
T Consensus 86 ~~lg~lll~~~~-------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i 142 (493)
T PRK15462 86 MAIGHVVLGASE-------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSL 142 (493)
T ss_pred HHHHHHHHHHhh-------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehH
Confidence 998887665431 01223445555666788888898899999999987433 9999999
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCC-CCChHHH-HHHh----hhhhccch
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKP-GGSPLTR-ICQS----LLYETADA 260 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~----~~~~~~~~ 260 (553)
+++..|+|+.++|.+++++.+..||++.|.++++.++++++.++...+..++..+ ++++..+ .... .......-
T Consensus 143 ~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (493)
T PRK15462 143 MYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVA 222 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887777777766655544333211 1111110 0000 00000000
Q ss_pred hhhhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeee
Q 008792 261 EFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQG 340 (553)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (553)
..... .....+. .....-.......... -....+ .+ ...++++|+...+.++....+||..++|.++.+....
T Consensus 223 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~-~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa 295 (493)
T PRK15462 223 TPALI-TVLFWKE-WSVYALIVATIIGLGV---LAKIYR-KA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYI 295 (493)
T ss_pred HHHHH-HHHHHHH-HHHHHHHHHHHHHHHH---HHHHHH-hc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 00000 0000000 0000000000000000 000000 01 1235688888899999999999999999887544433
Q ss_pred -cccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008792 341 -NTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRL 419 (553)
Q Consensus 341 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~ 419 (553)
++.|+++. ++.+|+++++.+|++.+++..|+...++.++.+| ++..+...+...|+++.+++++.+......
T Consensus 296 ~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~-- 368 (493)
T PRK15462 296 DRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLMSAGFCILTLSARW-- 368 (493)
T ss_pred HHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 46777777 8889999999999999999999998875554433 223577888999999999999888765322
Q ss_pred HHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHH-HHHHHHhhHhhhhc
Q 008792 420 REVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTA-ALGNYLSTLLVNIV 496 (553)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~lg~~ig~~l~~~i 496 (553)
.++ +...+.+|++..+++.++||.+..|+..+++.+++|++.||..+|++.... .+|+.++..+.+..
T Consensus 369 --~~~-------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 369 --SAM-------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred --cCC-------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 123688999999999999999999999999999999999999999998754 78888887777655
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=228.79 Aligned_cols=381 Identities=12% Similarity=0.030 Sum_probs=249.6
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
+.+|++.......+...++.....+.+|.|+++++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~ 90 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCG 90 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHH
Confidence 3346677888888899999888899999999999999999999999999999999999999999999 999999999988
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.+++...+.+.....+. ...++..+++.|+++|++.+...+...+++.|.+|+++ |++++++
T Consensus 91 ~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 152 (399)
T PRK05122 91 CALSGLLYLLAGLLAAW------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISW 152 (399)
T ss_pred HHHHHHHHHHhhhhhcc------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhh
Confidence 88777666544210100 01246678999999999999999999899999999888 9999999
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcc
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIG 266 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (553)
++.+.+.|..+||.+++++.+..||++.+.+..+..++..... .+ .+++++++.+
T Consensus 153 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~--------------------- 207 (399)
T PRK05122 153 NGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGE--------------------- 207 (399)
T ss_pred hhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCcc---------------------
Confidence 9999999999999999999988999988876555443332221 11 1111110000
Q ss_pred ccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHH-HHHHHHHHHHhhccccceEEeeecccCc
Q 008792 267 SHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLP-IWAIGIVFSAVYSQMGTLFVLQGNTMDL 345 (553)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (553)
..+ ++ +..++...... .......+.........++. +.
T Consensus 208 --------~~~--------------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 246 (399)
T PRK05122 208 --------RLP--------------------FR-------RVLGRVWPYGMGLALASIGFGTIATFITLYYA------AR 246 (399)
T ss_pred --------chh--------------------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hc
Confidence 000 00 00011110000 00111111111111111111 00
Q ss_pred CCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008792 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKH 425 (553)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~ 425 (553)
... ..+.......+..++..++.++ +.+|. ++++.+..+.++.+++.+.....
T Consensus 247 ~~~-----~~~~~~~~~~~~~~~~~~~~g~----l~~r~-------~~~~~~~~~~~~~~~~~~~~~~~----------- 299 (399)
T PRK05122 247 GWD-----GAALALTLFGVAFVGARLLFGN----LINRL-------GGLRVAIVSLLVEILGLLLLWLA----------- 299 (399)
T ss_pred ccc-----cchHHHHHHHHHHHHHHHHHHH----HHHHh-------ccHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 100 0011111112222233333333 44553 23345666666666666555442
Q ss_pred ccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCC
Q 008792 426 NYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGK 505 (553)
Q Consensus 426 ~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~ 505 (553)
.+.+++++..++.|++.+...|.......+..|++.|+++.|+++....+|..+++.+.+.+.+..
T Consensus 300 ---------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----- 365 (399)
T PRK05122 300 ---------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF----- 365 (399)
T ss_pred ---------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 234455666788899988888887888889999999999999999999999999999888776532
Q ss_pred CCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008792 506 PGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYT 544 (553)
Q Consensus 506 ~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~ 544 (553)
+++..|++.+++.+++.+..+.+.++.+
T Consensus 366 -----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 366 -----------GYPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred -----------CHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2455677777777777666655544433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=228.92 Aligned_cols=379 Identities=11% Similarity=0.097 Sum_probs=247.8
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMT 112 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 112 (553)
+..+...++.+.+.+.+.+.++.|+++++|.|..+.|++.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 6777889999999999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 113 ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
++... .+.+.+++.|+++|++.+...|...+++.|.+|+++ |++++++.+...+
T Consensus 92 ~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~ 145 (400)
T PRK11646 92 TMAIA--------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDS 145 (400)
T ss_pred HHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 88766 247778899999999999888988999999999887 9999999999999
Q ss_pred HHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcccccccc
Q 008792 193 IGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDH 272 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (553)
+|..+||.+++++. ..+|++.|++.++..++..+...+..++.+++ +..++.
T Consensus 146 ~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~-------------------------- 197 (400)
T PRK11646 146 AGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TVRTPV-------------------------- 197 (400)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-ccchhh--------------------------
Confidence 99999999999988 68999999988766655544333332221100 000000
Q ss_pred CCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCcc
Q 008792 273 TKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFE 352 (553)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
...++ +..++++ ......... .++....+...... .+.... + +..
T Consensus 198 ----------------------~~~~~----~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~p---~~~~~~-~-~~~ 242 (400)
T PRK11646 198 ----------------------REGMT----RVLRDKR-FVTYVLTLT---GYYMLAVQVMLMLP---IMVNDI-A-GSP 242 (400)
T ss_pred ----------------------HHHHH----HHHcCch-HHHHHHHHH---HHHHHHHHHHHhhh---hhHHhh-c-CCc
Confidence 00000 0001111 111111111 11111111111111 111111 0 000
Q ss_pred cccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 008792 353 IPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKH 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 432 (553)
...+..........+...... .++.+| | .+..+.+..+..+.+++.+.++..
T Consensus 243 ~~~g~l~~~~~~~~~~~~~~~----~~~~~~---r---~~~~~~~~~~~~~~~~~~~~l~~~------------------ 294 (400)
T PRK11646 243 SAVKWMYAIEACLSLTLLYPI----ARWSEK---R---FRLEHRLMAGLLIMSLSMFPIGMV------------------ 294 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHH---h---cchhHHHHHHHHHHHHHHHHHHHh------------------
Confidence 001111111122122222121 222322 1 233345666777777776655543
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCC
Q 008792 433 IPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDN 512 (553)
Q Consensus 433 ~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~ 512 (553)
.+.++++...++.+++.....|...+++.+.+|++.||+++|++++...+|..+|+.+.+.+.|..+..+
T Consensus 295 --~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~-------- 364 (400)
T PRK11646 295 --SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALN-------- 364 (400)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcC--------
Confidence 1334444556677888888889989999999999999999999999999999999999999887543211
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008792 513 LNYGNLHYFFWLLALLSVLNLGVYLMVARCY 543 (553)
Q Consensus 513 ~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~ 543 (553)
.....|++.+++.++.++......|+.
T Consensus 365 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (400)
T PRK11646 365 ----QPELPWMMLGIIGLITLLALYWQFSQK 391 (400)
T ss_pred ----CcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 112245555566666655544434433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=226.77 Aligned_cols=378 Identities=13% Similarity=0.060 Sum_probs=243.0
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
|..++.+.+..+..+...+...+.+| .+.+++|.|..+.++..+.+.++..++.++.|+++||+ |||+++..+.++.+
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 44455555555555444444334444 56788999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++++.++++ .+++.+++.|+++|++.+...+...+++.|.+|+++ |++++++.+
T Consensus 86 ~~~~~~~~~--------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~ 139 (390)
T PRK03545 86 ASHVLSALA--------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLA 139 (390)
T ss_pred HHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHH
Confidence 999888877 358889999999999999988999999999999988 999999999
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcccc
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSH 268 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (553)
.+.++|..++|.+++.+.+..|||+.|++.++..++.....+...|+.+++++ ++..
T Consensus 140 ~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~--------------------- 196 (390)
T PRK03545 140 TGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS--GSLK--------------------- 196 (390)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc--chHH---------------------
Confidence 99999999999999999888999999998887666555444333222111100 0000
Q ss_pred ccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHh-HHHHHHHHHHHHHhhccccceEEeeecccCcCC
Q 008792 269 KLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIR-LLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHI 347 (553)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (553)
+.. +..+.+.+.. ....+......+........++.. ..
T Consensus 197 -----------~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~ 236 (390)
T PRK03545 197 -----------SLP----------------------LLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQ-------VA 236 (390)
T ss_pred -----------HHH----------------------HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hc
Confidence 000 0000011111 111111111111111111111111 00
Q ss_pred CCCccccccc---ccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008792 348 DNSFEIPSAS---LSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKK 424 (553)
Q Consensus 348 ~~~~~~~~~~---~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~ 424 (553)
+ .+... ......+..++...+.++ +.+|. ++ +.+..+..+..++........
T Consensus 237 g----~s~~~~~~~~~~~~~~~~~g~~~~g~----l~dr~-------~~-~~~~~~~~~~~~~~~~l~~~~--------- 291 (390)
T PRK03545 237 G----LSENFATLLLLLFGGAGIIGSVLFSR----LGNRH-------PS-GFLLIAIALLLVCLLLLLPAA--------- 291 (390)
T ss_pred C----CCccHHHHHHHHHHHHHHHHHHHHHH----Hhhcc-------ch-hHHHHHHHHHHHHHHHHHHHh---------
Confidence 1 11111 111122222333333332 44442 22 234445544444443332211
Q ss_pred cccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCC
Q 008792 425 HNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHG 504 (553)
Q Consensus 425 ~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~ 504 (553)
.+.+.+++..++.|++.....+.....+.+..| +.|++++|+++....+|..+|+.+.+.+.|..
T Consensus 292 ----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~---- 356 (390)
T PRK03545 292 ----------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL---- 356 (390)
T ss_pred ----------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 234555666778888887777777888888877 57899999999999999999999999887532
Q ss_pred CCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 008792 505 KPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKLVV 550 (553)
Q Consensus 505 ~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~~~ 550 (553)
++...|++.+++.++++++++...+ .+..++||
T Consensus 357 ------------g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 389 (390)
T PRK03545 357 ------------GLSSIGYVGAALALAALVWSILIFR-RFPVTLEE 389 (390)
T ss_pred ------------ChhHHHHHHHHHHHHHHHHHHHHcc-ccchhhcc
Confidence 3345678888888888777666554 33444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=223.65 Aligned_cols=376 Identities=11% Similarity=0.045 Sum_probs=243.2
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
+..+.++...+..++..++.....+.+|.|+++++|.|..+.+++.+.+.+...++.++.|+++||+ ||||+++++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~ 90 (392)
T PRK12382 12 SANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLA 90 (392)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHH
Confidence 4446677777888888888888889999999999999999999999999999999999999999999 999999998877
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
..++.+...+....+. ....+++.++++|+++|++.+...+...+++.|.+|+++ |++++++
T Consensus 91 ~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~ 152 (392)
T PRK12382 91 CGLAGLAYLLAAILPV------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSW 152 (392)
T ss_pred HHHHHHHHHhhhcccc------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhH
Confidence 6666543322211010 001357889999999999999888888888999999888 9999999
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcc
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIG 266 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (553)
++.+.+.|..++|.+++++.+..||++.+.+..+..++.+. .. ++.++.++++++
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~--------------------- 207 (392)
T PRK12382 153 NGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FN-GTVRKVPAHAGE--------------------- 207 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HH-HhccCCCCCccc---------------------
Confidence 99999999999999999998889999876654443322221 11 111111110000
Q ss_pred ccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhH-HHHHHHHHHHHHhhccccceEEeeecccCc
Q 008792 267 SHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRL-LPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345 (553)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (553)
..+..+ ..+.+... .........+.......+.++ . +.
T Consensus 208 --------~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-----~~ 246 (392)
T PRK12382 208 --------RPSLWS---------------------------VVGLIWKPGLGLALQGVGFAVIGTFVSLYF-A-----SK 246 (392)
T ss_pred --------CchHHH---------------------------HHHHHHHhHHHHHHHHHHHhHHHHHHHHHH-H-----hc
Confidence 000000 00000000 000000111111111111111 0 00
Q ss_pred CCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008792 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKH 425 (553)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~ 425 (553)
... ..+..........++..++.++ +.+|.. +++.+..+..+.+++++.....
T Consensus 247 ~~~-----~~~~~~~~~~~~~~~~~~~~g~----l~~r~g-------~~~~~~~~~~~~~~~~~~~~~~----------- 299 (392)
T PRK12382 247 GWA-----MAGFTLTAFGGAFVLMRVLFGW----MPDRFG-------GVKVAIVSLLVETVGLLLLWLA----------- 299 (392)
T ss_pred CCc-----hhHHHHHHHHHHHHHHHHHHHH----HHHhcC-------CCeehHHHHHHHHHHHHHHHHc-----------
Confidence 100 0011111122222333444444 455533 2244556666666666554432
Q ss_pred ccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCC
Q 008792 426 NYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGK 505 (553)
Q Consensus 426 ~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~ 505 (553)
.+.++.++..++.+++.+...|.......+..|++.||++.|++++...+|+.+|+.+.+.+.+..
T Consensus 300 ---------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~----- 365 (392)
T PRK12382 300 ---------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF----- 365 (392)
T ss_pred ---------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 233445556778888888888888888899999999999999999999999999999999887643
Q ss_pred CCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008792 506 PGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMV 539 (553)
Q Consensus 506 ~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~ 539 (553)
++...|.+.+++.+++.++.+..
T Consensus 366 -----------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 366 -----------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred -----------CchHHHHHHHHHHHHHHHHHHhh
Confidence 22446777777777776655544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=224.51 Aligned_cols=387 Identities=11% Similarity=0.050 Sum_probs=244.4
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHH
Q 008792 26 TGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI 105 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 105 (553)
+++|..+...++..+++.+..+......|. +.+++|.|+.+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPR-MAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence 356666777777888888777766555554 5678999999999999999999999999999999999 99999999998
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 106 IYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
+..++.+++.+. .+++.+++.|++.|++.+...+...+++.|.+|+++ |+++++
T Consensus 89 ~~~~~~~~~~~~--------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~ 142 (406)
T PRK11551 89 LFGLFSLATAQA--------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVS 142 (406)
T ss_pred HHHHHHHHHHHh--------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 888888777765 347788999999999999999999999999999888 999999
Q ss_pred HHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhc
Q 008792 186 WFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVI 265 (553)
Q Consensus 186 ~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (553)
+.+...++|..+++.+++.+.+..+|++.|++.+++.++.........|+.++..++..+ +
T Consensus 143 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------~----- 203 (406)
T PRK11551 143 LMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA--------------G----- 203 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc--------------c-----
Confidence 999999999999999998888888999999887765554444333333322111000000 0
Q ss_pred cccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCc
Q 008792 266 GSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345 (553)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (553)
.+..+..+.. + + ..+..+........+......+......+.+... ...+.
T Consensus 204 -------~~~~~~~~~~---------------~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~ 254 (406)
T PRK11551 204 -------KQRAPVLRAL---------------F---G--EGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG--QGLSR 254 (406)
T ss_pred -------hhhhhhHHHH---------------h---h--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCh
Confidence 0000000000 0 0 0000111111111111111111211111111111 01010
Q ss_pred CCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008792 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKH 425 (553)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~ 425 (553)
. ..+.......+..++...+.++ +.+|.. +++.+..+.+..+++++.+...
T Consensus 255 ~-------~~~~~~~~~~~~~~~~~~~~g~----l~dr~g-------~~~~~~~~~~~~~~~~~~~~~~----------- 305 (406)
T PRK11551 255 S-------QAGLVQIAFNIGGALGSLLIGA----LMDRLR-------PRRVVLLIYAGILASLAALAAA----------- 305 (406)
T ss_pred h-------hhhHHHHHHHHHHHHHHHHHHH----HHHHHh-------HHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 0 1111222222333344444444 455532 2234444444444444444332
Q ss_pred ccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCC
Q 008792 426 NYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGK 505 (553)
Q Consensus 426 ~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~ 505 (553)
.+.+.+.+..++.+++.....+..+++..|..|++.|+++.|+.+....+|..+|+.+.+.+.+..
T Consensus 306 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~----- 371 (406)
T PRK11551 306 ---------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG----- 371 (406)
T ss_pred ---------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-----
Confidence 133444555667777777777888899999999999999999999999999999999999876532
Q ss_pred CCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 008792 506 PGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVAR 541 (553)
Q Consensus 506 ~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~ 541 (553)
+++...+++...+.+++.+..+...+
T Consensus 372 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 372 ----------RSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12334556666666665555554433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=212.34 Aligned_cols=379 Identities=16% Similarity=0.136 Sum_probs=261.6
Q ss_pred cCCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHH
Q 008792 25 ETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFS 104 (553)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~ 104 (553)
.+..|..++.+....|+....=+.....+|. +.++++.|..++|+.++.|.++..++.|+...+.||+ .||++++..+
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence 3456777888899999999988888887776 5789999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhH
Q 008792 105 IIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFF 184 (553)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (553)
.++.++.++++++ .+++.++++|++.|+..|.+++...++.+++.|+++ |++++
T Consensus 86 ~lFi~~n~l~alA--------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Ai 139 (394)
T COG2814 86 ALFIVSNLLSALA--------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRAL 139 (394)
T ss_pred HHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHH
Confidence 9999999999999 459999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCC--ChHHHHHHhhhhhccchhh
Q 008792 185 NWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGG--SPLTRICQSLLYETADAEF 262 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 262 (553)
++...+..+...+|..++.++.+.+|||+.|+..+++.++.++..+...| +.+.+++ .+..+.
T Consensus 140 aiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~------------- 204 (394)
T COG2814 140 ALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTL------------- 204 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHH-------------
Confidence 99999999999999999999999999999999888888887777766666 1111110 100000
Q ss_pred hhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecc
Q 008792 263 AVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNT 342 (553)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (553)
++ ..++.+.........+.....+..+.+..+++..
T Consensus 205 -----------------------------------~~-----~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~---- 240 (394)
T COG2814 205 -----------------------------------LR-----LLRRPGVLLGLLATFLFMTGHFALYTYIRPFLES---- 240 (394)
T ss_pred -----------------------------------HH-----HhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHH----
Confidence 00 0000111111112222222222333322222211
Q ss_pred cCcCCCCCcccccccc---cccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008792 343 MDLHIDNSFEIPSASL---SLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRL 419 (553)
Q Consensus 343 ~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~ 419 (553)
..+ ++...+ ....++.. .+.+.+..|+.|| ++.+.+.....+.++.++.+.+..
T Consensus 241 ---v~g----~s~~~vs~~Ll~~Gv~~----~~Gn~~gGrl~dr--------~~~~~l~~~~~l~a~~~l~l~~~~---- 297 (394)
T COG2814 241 ---VAG----FSVSAVSLVLLAFGIAG----FIGNLLGGRLADR--------GPRRALIAALLLLALALLALTFTG---- 297 (394)
T ss_pred ---ccC----CCHhHHHHHHHHHHHHH----HHHHHHHhhhccc--------cchhHHHHHHHHHHHHHHHHHHhc----
Confidence 111 111111 11112222 2223322334444 123445556566666666655542
Q ss_pred HHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhcccc
Q 008792 420 REVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDF 499 (553)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~ 499 (553)
.+.+..+...++.+++........+....+.. ++.++.+++++....++|..+|..+.+.+.|.
T Consensus 298 ---------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~ 361 (394)
T COG2814 298 ---------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA 361 (394)
T ss_pred ---------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23344444455555554444444444455533 47799999999999999999999999988764
Q ss_pred ccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008792 500 STRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTY 545 (553)
Q Consensus 500 ~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~ 545 (553)
. ++....+..+.+.+++.++.+...++.++
T Consensus 362 ~----------------g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 362 L----------------GYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred h----------------chHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2 34556788888888888877776665543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-23 Score=224.74 Aligned_cols=333 Identities=31% Similarity=0.591 Sum_probs=259.1
Q ss_pred HHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008792 45 AYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLK 124 (553)
Q Consensus 45 ~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (553)
++|++...+..|+.+.++.+.+++..+...+....++.++++|+++|+++||++++.++.+++.+|..++++... +..
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~- 79 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS- 79 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc-
Confidence 689999999999999999999999999999999999999999999999999999999999999999998887532 110
Q ss_pred CCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhhee
Q 008792 125 PLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVW 204 (553)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~ 204 (553)
.+.......+++..+.++|.|++.|+..+..+|+++++++ ..|.++|+++++++|+|+.+++.+.++
T Consensus 80 ----------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~ 146 (654)
T TIGR00926 80 ----------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPI 146 (654)
T ss_pred ----------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112345577889999999999999999999999976432 238899999999999999999999998
Q ss_pred eccc-------ccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccc
Q 008792 205 IQTN-------VGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLS 277 (553)
Q Consensus 205 l~~~-------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (553)
+.+. .+|...|.+++++++++++++....+++++++|.+++..+..+......+++. ..........
T Consensus 147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~------~~~~~~~~~~ 220 (654)
T TIGR00926 147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRF------STRSEHWPLH 220 (654)
T ss_pred HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhh------ccCCcccchh
Confidence 8743 36999999999999999998888777777666666655444433322221110 0000011123
Q ss_pred hhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCccccccc
Q 008792 278 FLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSAS 357 (553)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (553)
|+|.+... ...+.+++.|++++.+.++....++|..+.|..+.+..|...++.+++ ++.++++.
T Consensus 221 ~ld~a~~~---------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~ 284 (654)
T TIGR00926 221 WLDYAKDK---------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQ 284 (654)
T ss_pred HHHHhccc---------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHH
Confidence 44433211 112346788999999999999999999999999988888877777666 67889999
Q ss_pred ccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008792 358 LSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELV 417 (553)
Q Consensus 358 ~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~ 417 (553)
++.++.+.+++..|+.+..+.+..+|...+ .++..++.+|+++.+++++.....+..
T Consensus 285 lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~ 341 (654)
T TIGR00926 285 MQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLK 341 (654)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997766666554333 678899999999999999887765444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=227.43 Aligned_cols=171 Identities=13% Similarity=0.087 Sum_probs=144.3
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+.++..++..++..+..+.+...+|.+. +++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence 3344445555555555555666666654 56999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+.+++++. .+++.+++.|++.|++.|...+...+++.|++|+++ |++++++++.
T Consensus 101 ~~~~~~~~--------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~ 154 (434)
T PRK11663 101 INILFGFS--------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNT 154 (434)
T ss_pred HHHHHHHH--------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHH
Confidence 99888876 357778889999999999988999999999999888 9999999999
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHH
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVS 228 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~ 228 (553)
+.++|..++|.+++++.+..|||+.|++.++..++..+.
T Consensus 155 ~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~ 193 (434)
T PRK11663 155 AHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF 193 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998899999998877655544333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=225.50 Aligned_cols=389 Identities=13% Similarity=0.051 Sum_probs=244.5
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMT 112 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 112 (553)
...+...++..++.......+|.+. ++++.++.+.+++.+...++..++.++.|+++||+ |||+++..+.++.+++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~ 97 (417)
T PRK10489 20 RAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFI 97 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHH
Confidence 3444445566666655566666665 45777999999999999999999999999999999 999999988887777766
Q ss_pred HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 113 ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
..+....... .+++.+++.|+++|++.+...+...+++.|.+|+++ |+++.++.+...+
T Consensus 98 ~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 156 (417)
T PRK10489 98 GLALNAFLPE---------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVR 156 (417)
T ss_pred HHHHHHHcCC---------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHh
Confidence 5543210011 347778889999999998888888999999999877 9999999999999
Q ss_pred HHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccC-CCCChHHHHHHhhhhhccchhhhhccccccc
Q 008792 193 IGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQK-PGGSPLTRICQSLLYETADAEFAVIGSHKLD 271 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (553)
+|..+||.+++.+.+..+|++.|++.++..++..+..+.. ++.++++ +++++..
T Consensus 157 ~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~------------------------ 211 (417)
T PRK10489 157 LGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPREHPLR------------------------ 211 (417)
T ss_pred HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcccccchH------------------------
Confidence 9999999999999888899999988776666555443332 2211100 0000000
Q ss_pred cCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCc
Q 008792 272 HTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSF 351 (553)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (553)
+..+ .++ ...+.+.+....................+. +.....+
T Consensus 212 -----~~~~----------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~g--- 255 (417)
T PRK10489 212 -----SLLA----------------GFR-----FLLASPVVGGIALLGGLLTMASAVRVLYPA-------LADEVWQ--- 255 (417)
T ss_pred -----HHHH----------------HHH-----HHHcChHHHHHHHHHHHHHHHHhHHHhhHH-------HHHhccC---
Confidence 0000 000 000011111111111111111111111111 1111111
Q ss_pred ccccccc---cccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008792 352 EIPSASL---SLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYY 428 (553)
Q Consensus 352 ~~~~~~~---~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 428 (553)
.++... .....+..++...+.++ +.+| .++.+.+..+.++.+++++.+...
T Consensus 256 -~~~~~~g~~~~~~~~g~~ig~~~~~~----l~~~-------~~~~~~l~~~~~~~~~~~~~~~~~-------------- 309 (417)
T PRK10489 256 -MGAAQIGLLYAAVPLGAALGALTSGW----LAHS-------ARPGLLMLLSTLGSFLAVGLFGLM-------------- 309 (417)
T ss_pred -CChhHhHHHHHHHHHHHHHHHHHHHH----hhhc-------cCcchHHHHHHHHHHHHHHHHHcc--------------
Confidence 112111 12222222233333222 3333 122344556666666665554432
Q ss_pred cCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCC
Q 008792 429 ELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGW 508 (553)
Q Consensus 429 ~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w 508 (553)
.+.+..+...++.|++.+...+...+++.+..|++.||+++|+++....+|..+|+.+.+.+.+..+
T Consensus 310 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g------- 376 (417)
T PRK10489 310 ------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT------- 376 (417)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-------
Confidence 2334445566777888877778888899999999999999999999999999999999998876432
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCC
Q 008792 509 IPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKLVVSSH 553 (553)
Q Consensus 509 ~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 553 (553)
....+++.+++.++..++.+...++++++++||.|+
T Consensus 377 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 377 ---------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred ---------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 223566677777776677777778888887777653
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=223.31 Aligned_cols=353 Identities=12% Similarity=0.058 Sum_probs=234.7
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
+.+|+++......++...+++.+.++++.|+++++|.|..+.+++.+.+.+...++.++.|+++||+ |||++++++.+.
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 3456788888999999999999999999999999999999999999999999999999999999999 999999999988
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
..++.++.++. .+.+.+++.+.+.+.+.+...+...+...|.+|+++ |++++++
T Consensus 83 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~ 136 (395)
T PRK10054 83 FASGFIAIPLV--------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSL 136 (395)
T ss_pred HHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHH
Confidence 88888877766 346667778888888878778888899999999877 9999999
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcc
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIG 266 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (553)
.+...++|..++|.+++++.. .+|+.+|++.+++.++.++...+..++.+++++++++
T Consensus 137 ~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--------------------- 194 (395)
T PRK10054 137 NYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATETG--------------------- 194 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccchh---------------------
Confidence 999999999999999998875 7899999988777666654433322221111000000
Q ss_pred ccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhH-HHHHHHHHHHHHhhccccceEEeeecccCc
Q 008792 267 SHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRL-LPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345 (553)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (553)
+ .++.. +..+.|.++.. ...++..............+... ..+.
T Consensus 195 -------~---~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~ 239 (395)
T PRK10054 195 -------S---VWSPS----------------------VLLQDKALLWFTCSGFLASFVSGAFASCISQYVMV---VADS 239 (395)
T ss_pred -------h---hhhhh----------------------hhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHH---hccc
Confidence 0 00000 00001111111 11111111111111111111100 0010
Q ss_pred CCCCCccccccc---ccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008792 346 HIDNSFEIPSAS---LSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREV 422 (553)
Q Consensus 346 ~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~ 422 (553)
. .+... ....+....+...+..+ ++.+| .++++.+..++.+..++.+......
T Consensus 240 ~------~~~~~~g~~~~~~~~~~~~~~~~~g----~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~------- 295 (395)
T PRK10054 240 D------FAEKVVAVVLPVNAAMVVSLQYSVG----RRLNA-------ANIRPLMTAGTLCFVIGLVGFIFSG------- 295 (395)
T ss_pred c------hHHHHHHHHHHhhhhheeeehhHHH----HHHcc-------CCchhHHHHHHHHHHHHHHHHHHcc-------
Confidence 1 11111 11112222222222222 23444 3344566677777777766554321
Q ss_pred hhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccc
Q 008792 423 KKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFS 500 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~ 500 (553)
.+.+.+++..++.++|+....|...+.+.+..|++.|+++.+..+ ...+|..+||.+.+.+.|..
T Consensus 296 ------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~ 360 (395)
T PRK10054 296 ------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL 360 (395)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 133344556789999999989999999999999999999998765 56789999999999887743
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=222.11 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=154.6
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
.+.+|.+....++..+..+.+.+.+|.|.+ ++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 446788888888888888888888888764 6999999999999999999999999999999999 99999999988888
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++.+++.+. .+.+.+++.|+++|++.+...|...+++.|.+|+++ |++++++.+
T Consensus 87 ~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 140 (471)
T PRK10504 87 LGSLFCALS--------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVT 140 (471)
T ss_pred HHHHHHHHh--------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence 888777665 347778999999999999999999999999999877 999999999
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
...++|..+||.++|.+.+..+|++.|++......+..+......+
T Consensus 141 ~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 141 LPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999887666655555444433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=215.56 Aligned_cols=356 Identities=13% Similarity=0.093 Sum_probs=231.3
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008792 34 YILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTI 113 (553)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~ 113 (553)
..+...++..++.......+|.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++..+
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence 3456666777777667777777765 5799999999999999999999999999999999 9999999999888888877
Q ss_pred HHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHH
Q 008792 114 LTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINI 193 (553)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 193 (553)
.......+ +.+.+.+++.|+++|++.+...+...+++.|++|+++ |++.+++.+...++
T Consensus 81 ~~~~~~~~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 139 (365)
T TIGR00900 81 LPFVALLG---------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSL 139 (365)
T ss_pred HHHHHHcC---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHH
Confidence 77663111 1258889999999999999999999999999999887 99999999999999
Q ss_pred HHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccC
Q 008792 194 GALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHT 273 (553)
Q Consensus 194 G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (553)
|..++|.+++++.+..||++.|++.++..++..+..+....+.++++ +.++...
T Consensus 140 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------------- 193 (365)
T TIGR00900 140 FYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-EIQALSN------------------------- 193 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-cccccch-------------------------
Confidence 99999999999998899999998877666655544433322111110 0000000
Q ss_pred CccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHH-HHHHHHHHHhhccccceEEeeecccCcCCCCCcc
Q 008792 274 KQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPI-WAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFE 352 (553)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
+..... ...++ ...+.+.+...... ...............+.+..+ ..+
T Consensus 194 ---~~~~~~------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---- 243 (365)
T TIGR00900 194 ---AVLRDT------------REGIK-----FVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSK------YLG---- 243 (365)
T ss_pred ---hHHHHH------------HhHHH-----HHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HhC----
Confidence 000000 00000 00001111111111 111111111110111111110 011
Q ss_pred cccc---cccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008792 353 IPSA---SLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYE 429 (553)
Q Consensus 353 ~~~~---~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 429 (553)
.+.. .......+..++...+.+ ++.||. ++++.+..+..+.+++........
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------------- 298 (365)
T TIGR00900 244 RGSTHYGWVLAAFGLGALLGALLLG----LLGRYF-------KRMALMTGAIFVIGLAILVVGLTP-------------- 298 (365)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH----HHHHHh-------chhHHHHHHHHHHHHHHHHHHhhc--------------
Confidence 1111 112222222333333333 244443 233445555555565555554421
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008792 430 LKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTD 498 (553)
Q Consensus 430 ~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~ 498 (553)
.+.+..++..++.+++.+...+...+++.+..|++.|+++.|+.++...++..+++.+.+.+.|
T Consensus 299 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 299 -----PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245566678888999999999999999999999999999999999999999999999987765
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=218.02 Aligned_cols=382 Identities=12% Similarity=0.050 Sum_probs=243.1
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhh-----hhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQ-----AVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFS 104 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~ 104 (553)
|.........++..+++....+.+|.|++ ++|.+..+ .+++.+.+.+...++.++.|+++||+ |||++++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 45667777888888888888899999875 58887654 47888899999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhH
Q 008792 105 IIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFF 184 (553)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (553)
+..+++..++... .+.+.+++.|++.|++.+ ..+...+++.|.+|+++ |+++.
T Consensus 92 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~ 144 (408)
T PRK09874 92 LGMGIVMVLMGLA--------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWAL 144 (408)
T ss_pred HHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHH
Confidence 8888888777665 347788999999999865 45777788899999887 99999
Q ss_pred HHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhh
Q 008792 185 NWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAV 264 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (553)
++.+...++|..++|.+++.+.+..+|++.|++.+++.++..+..+...++.++..+++++ ..
T Consensus 145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------- 207 (408)
T PRK09874 145 GTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM--LH--------------- 207 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh--hH---------------
Confidence 9999999999999999999998889999999888876666555444333321110000000 00
Q ss_pred ccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHH-HHHHHHHhhccccceEEeeeccc
Q 008792 265 IGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWA-IGIVFSAVYSQMGTLFVLQGNTM 343 (553)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 343 (553)
..+... . . ++.+..+....... ............+.+......
T Consensus 208 -------------~~~~~~-------------~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 251 (408)
T PRK09874 208 -------------MREVVT-------------S---L-----KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAG-- 251 (408)
T ss_pred -------------HHHHHH-------------h---C-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 000000 0 0 00011110111101 000100000001111100000
Q ss_pred CcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008792 344 DLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVK 423 (553)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~ 423 (553)
... ......+.......+..++..+..++ +.+|. ++++.+..+..+..++.+.....
T Consensus 252 --~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~----l~dr~-------g~~~~~~~~~~~~~~~~~~~~~~--------- 308 (408)
T PRK09874 252 --NVS-NIAFISGMIASVPGVAALLSAPRLGK----LGDRI-------GPEKILITALIFSVLLLIPMSFV--------- 308 (408)
T ss_pred --cch-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcc-------ccchhHHHHHHHHHHHHHHHHHh---------
Confidence 000 00000011111112222333333333 44553 33345555655555555444332
Q ss_pred hcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCC
Q 008792 424 KHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRH 503 (553)
Q Consensus 424 ~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~ 503 (553)
.+.+.+++..++.|++.+...|...+.+.+..|++.||+..+.++....+|..+|+.+.+.+.+..
T Consensus 309 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~--- 374 (408)
T PRK09874 309 -----------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY--- 374 (408)
T ss_pred -----------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc---
Confidence 234455566778899999999998899999999999999999999999999999999999876532
Q ss_pred CCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008792 504 GKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCY 543 (553)
Q Consensus 504 ~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~ 543 (553)
++...|++.+++.+++.+..+...++.
T Consensus 375 -------------g~~~~f~~~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 375 -------------GFRAVFLVTAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234567888888888777666555444
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=214.33 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=138.2
Q ss_pred HHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008792 51 TNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKR 130 (553)
Q Consensus 51 ~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (553)
....+++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++..++++.
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~------------- 79 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA------------- 79 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence 3344557889999999999999999999999999999999999 99999999999999998888877
Q ss_pred CCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccccc
Q 008792 131 NVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVG 210 (553)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~ 210 (553)
.+.+.+++.|+++|++.+...+...+++.|.+|+++ |++++++.+...++|..++|.+++++.+..+
T Consensus 80 -------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 146 (399)
T TIGR00893 80 -------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFS 146 (399)
T ss_pred -------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence 348889999999999999999999999999999887 9999999999999999999999999888899
Q ss_pred chhhhHHHHHHHHHHHHHHHhccc
Q 008792 211 WGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 211 ~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
|++.|++.++..++..+..+...+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 147 WQWAFIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred chHHHHHHHHHHHHHHHHhhheec
Confidence 999998877766655554444333
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=225.11 Aligned_cols=153 Identities=16% Similarity=0.072 Sum_probs=130.1
Q ss_pred HHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008792 50 NTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDK 129 (553)
Q Consensus 50 ~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (553)
.....+++..+++.+..+.+++.+.+.++..++.+++|+++||+ |||+.++++.++.+++.++++++
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa------------ 252 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV------------ 252 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 44455667788999999999999999999999999999999999 99999999999999988888876
Q ss_pred CCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecc--
Q 008792 130 RNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQT-- 207 (553)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~-- 207 (553)
.+++.++++|++.|++.++..|...+++.|.+|++. |++.+++.++...+|.++++.++..+..
T Consensus 253 --------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~ 318 (742)
T TIGR01299 253 --------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318 (742)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 347889999999999999999999999999999988 9999999999999999999887654432
Q ss_pred -----------cccchhhhHHHHHHHHHHHHHH
Q 008792 208 -----------NVGWGWGFGIPAVAMAIAVVSF 229 (553)
Q Consensus 208 -----------~~~~~~~f~i~~~~~~~~~~~~ 229 (553)
..+||+.+++.++..++.++..
T Consensus 319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred cchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 2468988887776655554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=209.46 Aligned_cols=399 Identities=16% Similarity=0.052 Sum_probs=254.1
Q ss_pred hhhhhHHHHHHHHHHHh---HHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAYYGI---NTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~---~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+-++...++...++|.+ +....+++.++.++|.+|.|.+.+.+++.+.++-.+.|.++||. +.|+.+-+++++.++
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence 45566666667777754 45566788899999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
..++++++ .+++.+.+..++.|...|.-.|.+...++.++++++ ||+..++.|.
T Consensus 107 ~nil~Gfs--------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~ 160 (448)
T COG2271 107 VNILFGFS--------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNT 160 (448)
T ss_pred HHHHHhhh--------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehh
Confidence 99999988 358889999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhhhhh--eeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccc
Q 008792 190 SINIGALVAASCL--VWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGS 267 (553)
Q Consensus 190 ~~~~G~~~~~~i~--g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (553)
+-|+|+++.|.+. +++..+.+||..|++++++.++..+..++..|+.|++..-++. +..+ .|.....
T Consensus 161 shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~i--e~~~--------~d~~e~~- 229 (448)
T COG2271 161 SHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI--EEYR--------GDPLEIY- 229 (448)
T ss_pred hhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCH--HHhh--------cCchhhh-
Confidence 9999999999999 8888888999999999988777666666665555543321111 0000 0000000
Q ss_pred cccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhh-------ccccceEEeee
Q 008792 268 HKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVY-------SQMGTLFVLQG 340 (553)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 340 (553)
.+.++.+..+.++ --++-+++...++........++ ...+.++.. .
T Consensus 230 ~~~~~~~~ls~~~--------------------------i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e-~ 282 (448)
T COG2271 230 EEEKENEGLTAWQ--------------------------IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSE-V 282 (448)
T ss_pred hhhccCCCccHHH--------------------------HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-h
Confidence 0000000000010 11222233333333333332222 222222222 1
Q ss_pred cccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008792 341 NTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLR 420 (553)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~ 420 (553)
.+.+.. .........-...+....+.++ ++||..+-+ +.....+.+++..++++.....
T Consensus 283 k~~s~~-------~a~~a~~lfE~agl~G~Ll~Gw----lSDklfkgr----R~p~~~i~~~~i~~~~~~~w~~------ 341 (448)
T COG2271 283 KGFSLV-------KANWAISLFEVAGLPGTLLAGW----LSDKLFKGR----RGPMALIFMLLITASLVLYWLA------ 341 (448)
T ss_pred cCCCHH-------HHHHHHHHHHHHhhHHHHHHHH----HHHHhcccc----cchHHHHHHHHHHHHHHHHHcC------
Confidence 111111 1111111222333344445555 344433110 1122233333334444443332
Q ss_pred HhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHH-HHHHhhHhhhhcccc
Q 008792 421 EVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAAL-GNYLSTLLVNIVTDF 499 (553)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~~ig~~l~~~i~~~ 499 (553)
+..+.+.....+++.|+......-..-....|..|++..|++.|+......+ |...+....+++.|.
T Consensus 342 ------------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 342 ------------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred ------------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 1123444444445555443333323334688999999999999999998888 999999988888775
Q ss_pred ccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008792 500 STRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTY 545 (553)
Q Consensus 500 ~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~ 545 (553)
.+| .+.|.++.+.++++.++++...+..++
T Consensus 410 ------~gW----------~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 410 ------WGW----------DGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred ------CCC----------cchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 256 235777777777777777666654433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=224.15 Aligned_cols=435 Identities=12% Similarity=0.074 Sum_probs=240.7
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhc--------CCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFEL--------NQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTI 100 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--------~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~ 100 (553)
.+.++...+..+.+.+....+.+..+. +++.+ +.+..+.+++.+.+.++..++.+++|+++||+ ||||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~ 88 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHhHHH-HHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence 344444445555555444444443333 44444 88889999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhh
Q 008792 101 ASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK 180 (553)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 180 (553)
+++.+++.++.+..++....-.. ...++...+..++++|+++|++.|...|...++++|++|+++ |
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------r 154 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTS--------IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------R 154 (479)
T ss_pred HHHHHHHHHHHHHHHhhcccccc--------ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------h
Confidence 99999988888777653100000 000011345678899999999999999999999999999988 9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhheee--------cccccchhhhHHHHHHHHHHHHHHHhccceeeccC-CCCChHHHHHH
Q 008792 181 SSFFNWFYFSINIGALVAASCLVWI--------QTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQK-PGGSPLTRICQ 251 (553)
Q Consensus 181 ~~~~~~~~~~~~~G~~~~~~i~g~l--------~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 251 (553)
++++++.+.+..+|..+++.+++.+ .+..|||+.|++.++..++..+..++ .|+.++.. .++++ ++
T Consensus 155 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~-l~~s~~~l~~~~~~-~~--- 229 (479)
T PRK10077 155 GKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYF-VPETPRYLMSRGKQ-EQ--- 229 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHcCCH-HH---
Confidence 9999999999999999988776543 24579999999887666665444333 33322110 00000 00
Q ss_pred hhhhhccchhhhhccccccccC-CccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhc
Q 008792 252 SLLYETADAEFAVIGSHKLDHT-KQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYS 330 (553)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (553)
+.....+.... +..+.++..... .. ++.+..+..+...............+.
T Consensus 230 -----------~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (479)
T PRK10077 230 -----------AEGILRKIMGNTLATQALQEIKHS---------------LD-HGRKTGGKLLMFGVGVIVIGVMLSVFQ 282 (479)
T ss_pred -----------HHHHHHHHcCChhHHHHHHHHHHH---------------HH-HhhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 00000000000 000000000000 00 000000011100000000000001111
Q ss_pred cccceEE---eeecccCcCCCCCcccc-cccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHH
Q 008792 331 QMGTLFV---LQGNTMDLHIDNSFEIP-SASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIF 406 (553)
Q Consensus 331 ~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~ 406 (553)
+...... ..+... ...+ .... .........+..++..++.++ +.+|.. +++.+..+.++.++
T Consensus 283 ~~~~~~~~~~~~p~i~-~~~g--~~~~~~~~~~~~~~~~~~i~~~~~g~----l~dr~g-------~r~~~i~~~~~~~v 348 (479)
T PRK10077 283 QFVGINVVLYYAPEIF-KTLG--ASTDIALLQTIIVGVINLTFTVLAIM----TVDKFG-------RKPLQIIGALGMAI 348 (479)
T ss_pred HHhChhHHHHHHHHHH-HHcC--CCCchHHHHHHHHHHHHHHHHHHHHH----HHHHhc-------ChHHHHHhHHHHHH
Confidence 1110000 000000 0000 0000 011111122222233333333 455533 33567778888777
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHH-hhhhhhhhhcccChhhHHHHHHHHHHHHHHH
Q 008792 407 AMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFT-FIGQLEFFYEQAPDAMRSLCSALSLTTAALG 485 (553)
Q Consensus 407 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~-~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg 485 (553)
+++.+...... .....+.....++.+++.... .|..+.++.|..|++.|++++|+.+....++
T Consensus 349 ~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g 412 (479)
T PRK10077 349 GMFSLGTAFYT----------------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIA 412 (479)
T ss_pred HHHHHHHHHhc----------------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHH
Confidence 77666543210 012223333444555554443 3667899999999999999999999999999
Q ss_pred HHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 008792 486 NYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKLVVS 551 (553)
Q Consensus 486 ~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~~~~ 551 (553)
+.+++.+.+.+.+. +|..|.. +....|++.+++++++.++.+.+.+|+++++.||.
T Consensus 413 ~~~~~~~~p~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 468 (479)
T PRK10077 413 NYFVSWTFPMMDKN-------SWLVAHF---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM 468 (479)
T ss_pred HHHHHHHhHHHHhc-------cchhhhc---cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence 99998887755421 1221111 11335677777777777777777888877766653
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=211.03 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=152.0
Q ss_pred cCCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHH
Q 008792 25 ETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFS 104 (553)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~ 104 (553)
.++.|+.+....+..++.....|...+.+|.+ .+++|.++.+.++..+.+.++..++.++.|+++||+ |||++++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~ 92 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFA 92 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHH
Confidence 34467766777777677777777666777664 578999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhH
Q 008792 105 IIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFF 184 (553)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (553)
++.+++.+++.+. .+++.+++.|+++|++.+...|...+++.|.+|+++ |+++.
T Consensus 93 ~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~ 146 (394)
T PRK10213 93 VLLTLSCLLVSFA--------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKAL 146 (394)
T ss_pred HHHHHHHHHHHHH--------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHH
Confidence 9999988888776 358889999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHH
Q 008792 185 NWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~ 227 (553)
++.....++|..++|.+++++.+.+|||+.|++.+++.++...
T Consensus 147 ~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 147 SVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887765554443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=214.14 Aligned_cols=372 Identities=14% Similarity=0.060 Sum_probs=233.8
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh
Q 008792 39 ECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSA 118 (553)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~ 118 (553)
....+..++.+.+.+|. +++++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+..+.+++.++++++
T Consensus 18 ~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a- 94 (393)
T PRK09705 18 GLNMRPLLTSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY- 94 (393)
T ss_pred HHHcchhhhccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC-
Confidence 33333344555555554 6789999999999999999999999999999999999 99999999999999999999988
Q ss_pred cccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHh
Q 008792 119 SVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVA 198 (553)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 198 (553)
++++.++++|+++|++.+...+...+++.|.+| ++ |+++++.+..+.+.|..++
T Consensus 95 -------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 95 -------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred -------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence 347778999999999999999999999999887 66 8999999999999999999
Q ss_pred hhhheeecccc-cchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccc
Q 008792 199 ASCLVWIQTNV-GWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLS 277 (553)
Q Consensus 199 ~~i~g~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (553)
+.+++++.++. +||+.+.+.++..++.+...+...++. |++++ .+..+
T Consensus 149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---------------------------~~~~~ 197 (393)
T PRK09705 149 AAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSARE----VASSH---------------------------KTTTT 197 (393)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCC----Ccccc---------------------------CCCcC
Confidence 99999888764 899887655544433333322222111 10000 00000
Q ss_pred hhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCccccccc
Q 008792 278 FLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSAS 357 (553)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (553)
....+ ++.+.....+........++......+.++.. ...+.. ..+.
T Consensus 198 ----------------~~~~l--------~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s~~-------~ag~ 244 (393)
T PRK09705 198 ----------------PVRVV--------FTPRAWTLGVYFGLINGGYASLIAWLPAFYIE--IGASAQ-------YSGS 244 (393)
T ss_pred ----------------Ccccc--------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCChh-------hhhH
Confidence 00000 01111111111111122222222222222211 111100 0111
Q ss_pred ccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccch
Q 008792 358 LSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSI 437 (553)
Q Consensus 358 ~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (553)
......+..++...+.+ ++.||. ++++.+..++.+..++.+.+.... .+.
T Consensus 245 ~~~~~~i~~i~g~~~~g----~l~~r~-------~~~~~~~~~~~l~~~~~~~~~~~~-------------------~~~ 294 (393)
T PRK09705 245 LLALMTLGQAAGALLMP----AMARHQ-------DRRKLLMLALVLQLVGFCGFIWLP-------------------LQL 294 (393)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhc-------cchHHHHHHHHHHHHHHHHHHHcc-------------------chH
Confidence 11222222233333333 345553 333556666666666655443321 111
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhccc-ChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCC
Q 008792 438 FWQVPQYFIIGCAEVFTFIGQLEFFYEQA-PDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYG 516 (553)
Q Consensus 438 ~~~i~~~~l~g~~~~~~~~~~~~~~~~~~-P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~ 516 (553)
..+ ...+.+++.+...|.......+.. |++.+++..|+.+....++..++|.+.+++.|..+
T Consensus 295 ~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--------------- 357 (393)
T PRK09705 295 PVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--------------- 357 (393)
T ss_pred HHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------
Confidence 111 123456676677777666666666 47889999999999999999999999998887543
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 008792 517 NLHYFFWLLALLSVLNLGVYLMVARCYTYKKLVV 550 (553)
Q Consensus 517 ~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~~~ 550 (553)
++...|.+.++++++..+..+.+.++++.|.+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK09705 358 NYLMDWAFHALCVVGLMIITLRFAPARFPQLWVK 391 (393)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhccccccchhcc
Confidence 1234567777777777777777888776655543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=222.26 Aligned_cols=143 Identities=19% Similarity=0.371 Sum_probs=124.1
Q ss_pred chhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHH
Q 008792 64 GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVF 143 (553)
Q Consensus 64 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (553)
+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++..++.+..+. .+.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 130 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA-----------------LSVEML 130 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc-----------------cchHHH
Confidence 388999999999999999999999999999 99999999999999998888665221 235688
Q ss_pred HHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhh---eeecccccchhhhHHHHH
Q 008792 144 FVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCL---VWIQTNVGWGWGFGIPAV 220 (553)
Q Consensus 144 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~---g~l~~~~~~~~~f~i~~~ 220 (553)
+++|+++|++.+...+...++++|.+|+++ |++++++.+...++|..+++.++ +...+..+||+.|++.++
T Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~ 204 (481)
T TIGR00879 131 IVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI 204 (481)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999988 99999999999999999999999 777777899999998665
Q ss_pred HHHHHHHHHH
Q 008792 221 AMAIAVVSFF 230 (553)
Q Consensus 221 ~~~~~~~~~~ 230 (553)
..++.++..+
T Consensus 205 ~~~~~~~~~~ 214 (481)
T TIGR00879 205 PAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHh
Confidence 5555544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=213.60 Aligned_cols=181 Identities=12% Similarity=0.079 Sum_probs=151.0
Q ss_pred CccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 28 TWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
.|+..+...+..+++.+....+.. ..+.+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 455555566665666666555544 44578999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
.++..+++++ .+.+.+++.|+++|++.+...|...+++.|.+|+++ |+++++++
T Consensus 84 ~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~ 137 (412)
T TIGR02332 84 GIASTATMFA--------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALF 137 (412)
T ss_pred HHHHHHHHHh--------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence 9999999877 347789999999999999999998899999999888 99999999
Q ss_pred HHHHHHHHHHhhhhheeecc------cccchhhhHHHHHHHHHHHHHHHhcccee
Q 008792 188 YFSINIGALVAASCLVWIQT------NVGWGWGFGIPAVAMAIAVVSFFAGSRLY 236 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~------~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 236 (553)
+.+.++|..+++.+++++.+ ..|||+.|++.++..++.....++..|+.
T Consensus 138 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~ 192 (412)
T TIGR02332 138 MIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDS 192 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999999999988753 46999999988776665555444444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=210.02 Aligned_cols=348 Identities=18% Similarity=0.241 Sum_probs=223.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 008792 36 LGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILT 115 (553)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~ 115 (553)
++..++..+......+.++.++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++..+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 3456667777777777777688899999999999999999999999999999999999 999999999999999966655
Q ss_pred hhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHH
Q 008792 116 MSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGA 195 (553)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 195 (553)
++ .+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|.
T Consensus 81 ~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~ 134 (352)
T PF07690_consen 81 FA--------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGS 134 (352)
T ss_dssp HH--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHH
T ss_pred hh--------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhh
Confidence 54 135589999999999999999999999999999988 9999999999999999
Q ss_pred HHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCc
Q 008792 196 LVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQ 275 (553)
Q Consensus 196 ~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (553)
.++|.+++.+.+..+|++.|++.+++.++..+......++.+++++..++. +.
T Consensus 135 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~---------------------------~~ 187 (352)
T PF07690_consen 135 ILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPK---------------------------ES 187 (352)
T ss_dssp HHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SST---------------------------TT
T ss_pred hcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccc---------------------------cc
Confidence 999999999998899999999998888877664444443322221111100 00
Q ss_pred cchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHH-HHHHhhccccceEEeeecccCcCCCCCcc--
Q 008792 276 LSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGI-VFSAVYSQMGTLFVLQGNTMDLHIDNSFE-- 352 (553)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 352 (553)
. .+. ..++++. .+...+.+.++......+... .........+. +.. ...+ ..
T Consensus 188 ~--~~~-------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~------~~~~--~~~~ 242 (352)
T PF07690_consen 188 E--SKK-------------PKPLKPG-FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPL-YLQ------EVLG--FSGP 242 (352)
T ss_dssp T----H-------------HHCCCH--CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HCC------HHHH--CCTH
T ss_pred c--ccc-------------ccccccc-cccccccchhhhhhhhhhHHHHHHHHhhcccch-hhh------hccC--CCHH
Confidence 0 000 0000000 001111221111111111111 11111111111 111 1111 00
Q ss_pred cccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 008792 353 IPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKH 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 432 (553)
...+.......+..++..++.++ +.+|.. +.+..........++.+.+......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 296 (352)
T PF07690_consen 243 SQAGLLFSIFGIVGIIGSLLAGR----LSDRFG-------RRRRLLIAILLLILGALGLLLLPFS--------------- 296 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHTT-------CHHHHHHHHHHHHHHHHHHCCSHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHcC-------cHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 00111122222223333444444 455532 2233444444444444333332111
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhh
Q 008792 433 IPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLST 490 (553)
Q Consensus 433 ~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~ 490 (553)
.+..+.+...++.|++.+...+...+++.+..|++.||++.|+.++...+|..+||
T Consensus 297 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 297 --SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 24456666788899999999999999999999999999999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=218.40 Aligned_cols=391 Identities=10% Similarity=0.036 Sum_probs=238.7
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
|..+..+++..+...+....+...+|.. .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 4445566666666666666555556554 678999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCC-CCCchHhHhhhhhhHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQF-DDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~ 187 (553)
+++++++.+ .+.+.++++|+++|++.+...|...+.+.+.+ |+++ |+++++++
T Consensus 83 ~~~~~~~~a--------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~ 136 (495)
T PRK14995 83 LASLAAAFS--------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVW 136 (495)
T ss_pred HHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHH
Confidence 999999877 35888999999999999998888777777776 4555 99999999
Q ss_pred HHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHH------hhhhhccchh
Q 008792 188 YFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQ------SLLYETADAE 261 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 261 (553)
....++|..+||.+++++.++.||||.|++...+.++.++......|+.++++.++.+...... .......+
T Consensus 137 ~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~-- 214 (495)
T PRK14995 137 AAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKT-- 214 (495)
T ss_pred HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHh--
Confidence 9999999999999999999999999999988877666655554444433222111111111000 00000000
Q ss_pred hhhccccccccCCccchh--h--------hccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhcc
Q 008792 262 FAVIGSHKLDHTKQLSFL--D--------KAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQ 331 (553)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (553)
.. +.....+. . .......+. ....+.. ..+ ..+.+.........+...........
T Consensus 215 -------~~-~~~~~~~~~~~~~~~~~~~l~~f~~~e~---~~~~p~~--~~~-lf~~~~~~~~~~~~~~~~~~~~~~~~ 280 (495)
T PRK14995 215 -------AL-KGFLSLWVTSLTLLTGALLLGLFIRTQL---AASRPMI--DMR-LFTHRIILSGVVMAMTAMITLVGFEL 280 (495)
T ss_pred -------cc-ccCCchHHHHHHHHHHHHHHHHHHHHHh---cCCCCCc--CHH-HhCCcccHHHHHHHHHHHHHHHHHHH
Confidence 00 00000000 0 000000000 0000100 000 00111111111111111111111111
Q ss_pred ccceEEeeecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHH
Q 008792 332 MGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTA 411 (553)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 411 (553)
+.+. +++...+ ......+.......+...+..++.++ +.+|. ++++.+..|+++.+++...+
T Consensus 281 ~~~~------~lq~v~g-~s~~~ag~~~~~~~~~~~~~~~~~g~----l~~r~-------g~~~~~~~g~~~~~~~~~~l 342 (495)
T PRK14995 281 LMAQ------ELQFVHG-LSPLEAGMFMLPVMVASGFSGPIAGI----LVSRL-------GLRLVATGGMALSALSFYGL 342 (495)
T ss_pred HHHH------HHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHc-------CchHHHHHHHHHHHHHHHHH
Confidence 1111 1111111 00011111122222333344444444 45553 33355667777777776655
Q ss_pred HHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhH
Q 008792 412 GTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTL 491 (553)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~ 491 (553)
.... ...+.+......++.|+|.+...++....+.+..|++.++.+.+++++...+|+.+|+.
T Consensus 343 ~~~~-----------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~a 405 (495)
T PRK14995 343 AMTD-----------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIA 405 (495)
T ss_pred HHhc-----------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4431 11233445566788899999999888999999999999999999999999999999999
Q ss_pred hhhhccc
Q 008792 492 LVNIVTD 498 (553)
Q Consensus 492 l~~~i~~ 498 (553)
+.+.+.+
T Consensus 406 i~g~i~~ 412 (495)
T PRK14995 406 IFGLLLS 412 (495)
T ss_pred HHHHHHH
Confidence 9988765
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-23 Score=219.37 Aligned_cols=159 Identities=14% Similarity=0.040 Sum_probs=129.8
Q ss_pred HHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCC
Q 008792 52 NLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRN 131 (553)
Q Consensus 52 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (553)
...+.+.+++|.+..+.|++.+.+.+++.++.+++|+++||+ |||+++.++.++.+++.+..++.....
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~---------- 118 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGSG---------- 118 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhcc----------
Confidence 334557789999999999999999999999999999999999 999999998888777776666431100
Q ss_pred CcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccc--
Q 008792 132 VCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNV-- 209 (553)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~-- 209 (553)
..+++.+++.|+++|++.+...|...+++.|++|+++ |++++++++.+.++|.++++.+..++....
T Consensus 119 -----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~ 187 (467)
T PRK09556 119 -----SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFD 187 (467)
T ss_pred -----cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhcc
Confidence 1358889999999999999999999999999999998 999999999999999999998887665542
Q ss_pred -cchhhhHHHHHHHHHHHHHHHhc
Q 008792 210 -GWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 210 -~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
+|+..|.+.+++.++..+..+..
T Consensus 188 ~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 188 GHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHh
Confidence 68888877666555444443333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=209.89 Aligned_cols=161 Identities=12% Similarity=0.105 Sum_probs=125.4
Q ss_pred HHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008792 45 AYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLK 124 (553)
Q Consensus 45 ~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (553)
....+.+.+ +.+++++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+......+.......
T Consensus 6 ~~~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~------- 76 (368)
T TIGR00903 6 IWVTFSPVL-SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP------- 76 (368)
T ss_pred HHHHHHhhH-HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh-------
Confidence 333344444 445778999999999999999999999999999999999 99988765544443332212211
Q ss_pred CCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhhee
Q 008792 125 PLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVW 204 (553)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~ 204 (553)
.++..+++.|+++|++.+.. +...+.++|.+|+++ |++++++.+.+.++|..+++.++++
T Consensus 77 -------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~ 136 (368)
T TIGR00903 77 -------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLK 136 (368)
T ss_pred -------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24788999999999999864 555566689999877 9999999999999999999999999
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 205 IQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 205 l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
+.+..|||+.|++.+++.++.....+...|
T Consensus 137 l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 137 IYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999998877666555554444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=214.80 Aligned_cols=160 Identities=16% Similarity=0.079 Sum_probs=126.8
Q ss_pred HHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008792 51 TNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKR 130 (553)
Q Consensus 51 ~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (553)
....+|+.++ |.|..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.+++.+.+++....
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~---------- 116 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA---------- 116 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc----------
Confidence 3344577777 99999999999999999999999999999999 99999999999988888877765210
Q ss_pred CCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHH-Hhhhhheeecccc
Q 008792 131 NVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGAL-VAASCLVWIQTNV 209 (553)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~i~g~l~~~~ 209 (553)
..+.+.+++.|++.|++.+...|.....+.|++|+++ |++++++++.+.++|+. .+|.++..+....
T Consensus 117 ------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 184 (452)
T PRK11273 117 ------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN 184 (452)
T ss_pred ------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 1247778889999999999988888888999999888 99999999999999874 4555433333345
Q ss_pred cchhhhHHHHHHHHHHHHHHHhccc
Q 008792 210 GWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 210 ~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
+||+.|++.+++.++..+..+...+
T Consensus 185 gw~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 185 DWHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999877666555444433333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=209.43 Aligned_cols=338 Identities=12% Similarity=0.065 Sum_probs=214.8
Q ss_pred HHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008792 45 AYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLK 124 (553)
Q Consensus 45 ~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (553)
+...+.+.++. +.+++|.|..+.++..+.+.++..++.++.|+++||+ ||||+++.+.....++..+....
T Consensus 28 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~------- 98 (406)
T PRK15402 28 ANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA------- 98 (406)
T ss_pred hhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH-------
Confidence 44445555554 4578999999999999999999999999999999999 99999999998888888887766
Q ss_pred CCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhhee
Q 008792 125 PLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVW 204 (553)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~ 204 (553)
.+.+.+++.|+++|++.+...+...+++.|.+|+++ |.+.+++.+....+|..++|.++++
T Consensus 99 -------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~ 159 (406)
T PRK15402 99 -------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAA 159 (406)
T ss_pred -------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778899999999999888888899999999887 8888898888888999999999999
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccc
Q 008792 205 IQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAV 284 (553)
Q Consensus 205 l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (553)
+.+..+|++.|++.++..++.....+...|+.++++++..+..+ ..+
T Consensus 160 l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~---- 206 (406)
T PRK15402 160 LIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKE-----------------------------LGR---- 206 (406)
T ss_pred HHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHH-----------------------------HHH----
Confidence 98888999999887777666655444333322111000000000 000
Q ss_pred cCCCCcCCCCCCccccccchhhhhHHHHHhH-HHHHHHHHHHHHhhccccceEEeeecccCcCCCCCccccccccccc--
Q 008792 285 ETPSDCVKGSVNAWRLCTVTQVEEFKSIIRL-LPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLF-- 361 (553)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 361 (553)
.++ .....+.+... ....+............+.++. ...+ .++......
T Consensus 207 ------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~g----~~~~~~g~~~~ 258 (406)
T PRK15402 207 ------------DYK-----LVLKNRRFVAGALALGLVSLPLLAWIALSPVILI-------SGEQ----LSSYEYGLLQV 258 (406)
T ss_pred ------------HHH-----HHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHhC----CCHHHHHHHHH
Confidence 000 00001111111 1111111111111111111110 0111 111111111
Q ss_pred -chhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHH
Q 008792 362 -DTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQ 440 (553)
Q Consensus 362 -~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (553)
..+..++..++.+ ++.+| .++++.+..+.++..++.+........ ...+.++.
T Consensus 259 ~~~~~~~~g~~~~g----~l~~r-------~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~~~ 312 (406)
T PRK15402 259 PVFGALIAGNLTLA----RLTSR-------RPLRSLIRMGLWPMVAGLLLAALATVI---------------SSHAYLWL 312 (406)
T ss_pred HHHHHHHHHHHHHH----HHHHh-------cCHHHHHHHHHHHHHHHHHHHHHHHHc---------------ccccHHHH
Confidence 1111222223322 34444 344456667777777776665543210 01245566
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008792 441 VPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTD 498 (553)
Q Consensus 441 i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~ 498 (553)
++..++.+++.+...+..+...... +++.||++.++.++.+.++..+|+.+.+.+.+
T Consensus 313 ~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 313 TAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7778889999988887776665544 45899999999999999999999999987754
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=214.40 Aligned_cols=151 Identities=11% Similarity=0.044 Sum_probs=126.5
Q ss_pred HHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCc
Q 008792 54 VNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVC 133 (553)
Q Consensus 54 ~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 133 (553)
.+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..+++++++++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~---------------- 104 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS---------------- 104 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh----------------
Confidence 3445688999999999999999999999999999999999 99999999998888888888776
Q ss_pred CCCchhHHHHHH-HHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccch
Q 008792 134 HPTGLQIAVFFV-GLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWG 212 (553)
Q Consensus 134 ~~~~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~ 212 (553)
.+.+.+++ .|+++|++.+...+...+++.+.++ ++ |+++.++.+.+.++|..++|.+++++.+..|||
T Consensus 105 ----~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr 173 (455)
T TIGR00892 105 ----SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWR 173 (455)
T ss_pred ----hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChH
Confidence 23555554 5688999999776666778888885 55 999999999999999999999999999989999
Q ss_pred hhhHHHHHHHHHHHHHHHhc
Q 008792 213 WGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 213 ~~f~i~~~~~~~~~~~~~~~ 232 (553)
++|++.+++.+++.+..++.
T Consensus 174 ~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 174 GSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99998887766655444433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-22 Score=205.71 Aligned_cols=174 Identities=14% Similarity=0.141 Sum_probs=151.3
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.++...+..+......+...+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 55677778888888887777777766 4678999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+.++++.+ .+.+.+++.|+++|++.+...+...+++.|.+|+++ |++++++...
T Consensus 81 ~~~l~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 134 (382)
T PRK10091 81 GNAMFTLS--------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVS 134 (382)
T ss_pred HHHHHHHh--------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHH
Confidence 99888877 358889999999999999888888888899998877 8999999999
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
+..+|..++|.+++++.+..+||+.|++.++..++..+..+.
T Consensus 135 ~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 135 GMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred HHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988899999999888766555544333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=212.21 Aligned_cols=179 Identities=15% Similarity=0.083 Sum_probs=134.8
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhh----hcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRF----ELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFS 104 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~----~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~ 104 (553)
++.+....+..+.+......+....+..-.+ +...+..+.+++.+...++..++.+++|+++||+ |||+++.++.
T Consensus 15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~ 93 (502)
T TIGR00887 15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence 3444455555566665554444444433221 1245566778999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhH
Q 008792 105 IIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFF 184 (553)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (553)
++..++.++++++.+.. ...+.+.++++|+++|++.|...+..+.++.|.+|+++ |+++.
T Consensus 94 ~~~~v~~~~~~~~~~~~--------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~ 153 (502)
T TIGR00887 94 IIMIIATVASGLSPGSS--------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMM 153 (502)
T ss_pred HHHHHHHHHHHHccCcc--------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHH
Confidence 99999988887652100 00236789999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhhhhheeecc-----------------------cccchhhhHHHHHHHHHHHHH
Q 008792 185 NWFYFSINIGALVAASCLVWIQT-----------------------NVGWGWGFGIPAVAMAIAVVS 228 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~l~~-----------------------~~~~~~~f~i~~~~~~~~~~~ 228 (553)
++.+....+|..+++.++.++.. ..+||+.|.+.++..++.++.
T Consensus 154 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 154 AAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887764421 237999997776655544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-22 Score=206.03 Aligned_cols=172 Identities=12% Similarity=0.040 Sum_probs=138.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHH-HHHHHHHHHHHH
Q 008792 36 LGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIAS-FSIIYVIGMTIL 114 (553)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~-~~~~~~i~~~~~ 114 (553)
++..++..++.....+.++.|+++++|.|..+.+++.+.+.+...+..++.|+++||+ ||||.++. +.+...++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 4557778888888899999999999999999999999999999999999999999999 98887654 455555566666
Q ss_pred HhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhh--HHHHHHHHH
Q 008792 115 TMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSF--FNWFYFSIN 192 (553)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~ 192 (553)
+.+ .+++.+++.|+++|.+.+...|...++..|..|+++ |... .+..+...+
T Consensus 82 ~~~--------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 135 (375)
T TIGR00899 82 AWN--------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQIS 135 (375)
T ss_pred Hhc--------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHh
Confidence 655 346778888988888888788888888888877655 5443 577788889
Q ss_pred HHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 193 IGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
+|..++|.+++++.+..+||+.|++.++..++.....+...|
T Consensus 136 ~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 136 LAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred HHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998899999999888766666555444333
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=214.74 Aligned_cols=151 Identities=12% Similarity=0.136 Sum_probs=131.5
Q ss_pred hcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchh
Q 008792 60 ELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQ 139 (553)
Q Consensus 60 ~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (553)
+++.+..+.|++.+.+.+++.++.+++|+++||+ |||+++..+.++.+++.++...... .+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~------------------~~ 130 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG------------------GG 130 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH------------------cC
Confidence 6789999999999999999999999999999999 9999999999888888777654421 23
Q ss_pred HHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccc-ccchhhhHHH
Q 008792 140 IAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTN-VGWGWGFGIP 218 (553)
Q Consensus 140 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~-~~~~~~f~i~ 218 (553)
.+.+++.|+++|++.+...|....++.|++|+++ |++++++.+.+.++|..++|.+++++.+. .+|++.|++.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 6678999999999999999999999999999988 99999999999999999999999999888 4999999988
Q ss_pred HHHHHHHHHHHHhccce
Q 008792 219 AVAMAIAVVSFFAGSRL 235 (553)
Q Consensus 219 ~~~~~~~~~~~~~~~~~ 235 (553)
++..++..+.++...++
T Consensus 205 ~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 205 GIVGCAWSLLWFVFPAD 221 (465)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 87766665555544443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=207.68 Aligned_cols=357 Identities=12% Similarity=0.017 Sum_probs=220.9
Q ss_pred HHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008792 46 YYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKP 125 (553)
Q Consensus 46 ~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 125 (553)
.+.+ +.+.+++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++..+++++
T Consensus 19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~-------- 88 (377)
T TIGR00890 19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA-------- 88 (377)
T ss_pred Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH--------
Confidence 4444 4455677889999999999999999999999999999999999 99999999999999999888877
Q ss_pred CCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheee
Q 008792 126 LCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWI 205 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l 205 (553)
.+.+.+++.|++.|++.+...+.....+.+.+| ++ |+++.++.+.+.++|..+++.+.+.+
T Consensus 89 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (377)
T TIGR00890 89 ------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSV 149 (377)
T ss_pred ------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHH
Confidence 458889999999999999887777777888886 45 89999999999999988877677777
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhcccc
Q 008792 206 QTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVE 285 (553)
Q Consensus 206 ~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (553)
.+..+||+.|++.++..++.....+...++.++++++.++ +.++ +..+
T Consensus 150 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~-~~~~-------- 197 (377)
T TIGR00890 150 INLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI-----------------------EVSV-KDYT-------- 197 (377)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc-----------------------ccch-hhhh--------
Confidence 7778999999988877666655444333221111000000 0000 0000
Q ss_pred CCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccccccccchhh
Q 008792 286 TPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTIS 365 (553)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (553)
++ +..++++........+...... .........+.. +.... ....+.......+.
T Consensus 198 ------------~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~ 252 (377)
T TIGR00890 198 ------------VW----EMLRTPQFWVLYLSFFLNAVSG-LLLIGLYKPYGQ-----SLGLS---DGFLVLAVSISSIF 252 (377)
T ss_pred ------------HH----HHHcCccHHHHHHHHHHHhHHH-HHHHHHHHHHHH-----HcCCC---HHHHHHHHHHHHHH
Confidence 00 0000111111111111111110 011101110100 10100 00011122223333
Q ss_pred hHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHH
Q 008792 366 VIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYF 445 (553)
Q Consensus 366 ~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 445 (553)
.++..++.++ +.||.. +++.+..+.++.+++.+...... ....+..+...+
T Consensus 253 ~~~~~~~~g~----l~dr~g-------~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 303 (377)
T TIGR00890 253 NGGGRPFLGA----LSDKIG-------RQKTMSIVFGISAVGMAAMLFIP------------------MLNDVLFLATVA 303 (377)
T ss_pred HHHHHHHHHH----HHHHHh-------hhhhhhHHHHHHHHHHHHHHHcc------------------cchhHHHHHHHH
Confidence 3444444444 455533 22445566666666665554421 012222333445
Q ss_pred HHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHH
Q 008792 446 IIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLL 525 (553)
Q Consensus 446 l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~ 525 (553)
+.+++.+...+....++.|..|++.|+++.|+.+....+|+.+++.+.+.+.+.. ++...|++.
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~f~~~ 367 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI----------------GFEYTFIVT 367 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh----------------chhhHHHHH
Confidence 5666666666677788899999999999999999999999999999999876532 223456666
Q ss_pred HHHHHHHH
Q 008792 526 ALLSVLNL 533 (553)
Q Consensus 526 ~~~~~v~~ 533 (553)
+++.+++.
T Consensus 368 ~~~~~~~~ 375 (377)
T TIGR00890 368 GAFALTSL 375 (377)
T ss_pred HHHHHHhc
Confidence 66666543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=207.42 Aligned_cols=174 Identities=16% Similarity=0.228 Sum_probs=149.6
Q ss_pred cCCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHH
Q 008792 25 ETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFS 104 (553)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~ 104 (553)
.+.+|+.+....+..+.+.+..+.+....+ .+++++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 446677777777778888887776655555 56788999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhH
Q 008792 105 IIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFF 184 (553)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (553)
++.+++.+++.+. .+++.+++.|++.|++.+...+...+++.|.+|+++ |++++
T Consensus 85 ~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~ 138 (405)
T TIGR00891 85 VLFSAGTLACGFA--------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKAS 138 (405)
T ss_pred HHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHH
Confidence 9988888888766 347788999999999999999999999999999988 99999
Q ss_pred HHHHHHHHHHHHHhhhhheeeccccc--chhhhHHHHHHHHHHH
Q 008792 185 NWFYFSINIGALVAASCLVWIQTNVG--WGWGFGIPAVAMAIAV 226 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~l~~~~~--~~~~f~i~~~~~~~~~ 226 (553)
++.+.+.++|..+++.+++.+.+..+ |++.|++.++..++.+
T Consensus 139 ~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 139 GLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877666 9999987665444443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=214.90 Aligned_cols=391 Identities=14% Similarity=0.113 Sum_probs=235.9
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMT 112 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 112 (553)
..++...+...+........+ +.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAI-PTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHH
Confidence 344455555555555444444 455678999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 113 ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
+++.. .+.+.++++|+++|++.+...+...+++.|.+|+++ |++++++++....
T Consensus 83 ~~~~~--------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ 136 (485)
T TIGR00711 83 LCGVA--------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVL 136 (485)
T ss_pred HHhCc--------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHH
Confidence 88866 347889999999999999999999999999999887 9999999999999
Q ss_pred HHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcccccccc
Q 008792 193 IGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDH 272 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (553)
+|..++|.+++++.++.+|++.|++.++..++.....+...++.++++.+..+... ..+......... .....
T Consensus 137 ~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g---~~l~~~~~~~~~----~~~~~ 209 (485)
T TIGR00711 137 VAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLG---LLLLSVGLGSLL----YGLSE 209 (485)
T ss_pred HHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHH---HHHHHHHHHHHH----HHHhh
Confidence 99999999999999999999999988766665555444433332211111111100 000000000000 00000
Q ss_pred CCccchhhhcc--------------ccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEe
Q 008792 273 TKQLSFLDKAA--------------VETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVL 338 (553)
Q Consensus 273 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (553)
.+...|.+... ....+....+...+++. .++++.....+..+.....++......+.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-- 282 (485)
T TIGR00711 210 GPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRL-----FKYRNFTIGCVYMSLLGLGLYGSFYLLPLYL-- 282 (485)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHH-----HcCCChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 00000000000 00000000000000000 0111111111111111111111111111111
Q ss_pred eecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008792 339 QGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVR 418 (553)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~ 418 (553)
....+ ......+.......+..++..++.++ +.+| +++++.+..+..+.+++.+......
T Consensus 283 -----~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~g~~~~~~~~~~~~~~~--- 342 (485)
T TIGR00711 283 -----QQVLG-YTALQAGLHILPVGLAPMLSSPIAGR----MGDK-------IDPRKLVTIGLILYAVGFYWRAFTF--- 342 (485)
T ss_pred -----HHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHhh-------cCcHHHHHHHHHHHHHHHHHHhccC---
Confidence 11111 00001112222233333444444444 3444 3344566677777777766554210
Q ss_pred HHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008792 419 LREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTD 498 (553)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~ 498 (553)
....+.+..+...++.|++.+...++......+..|++.|+++.|+.++...+|+.+|+.+.+.+.+
T Consensus 343 -------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 343 -------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred -------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1113445556667889999998888878888889999999999999999999999999999987765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-22 Score=210.41 Aligned_cols=166 Identities=14% Similarity=0.186 Sum_probs=143.9
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
.+++.+....+..+.+.+..+.... ..+++++++|.|+.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFY-IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence 3445566666666666666665544 44567789999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.+++.++.+++ .+.+.++++|+++|++.+...+...+++.|.+|+++ |+++.++
T Consensus 93 ~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~ 146 (426)
T PRK12307 93 YSVGTGLSGLA--------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAF 146 (426)
T ss_pred HHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhH
Confidence 99999888877 357889999999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHH
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAV 220 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~ 220 (553)
.+.+..+|..+++.+.+.+.+..+||+.|++.++
T Consensus 147 ~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 147 LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 9999999999999999988888999999987554
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=201.59 Aligned_cols=178 Identities=14% Similarity=0.058 Sum_probs=148.6
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
++.++......+....+.....+.+|. +.+++|.|+.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 344444555555556665656665654 5678999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++..++... .+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+
T Consensus 82 ~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 135 (385)
T TIGR00710 82 LSSLGLALS--------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILM 135 (385)
T ss_pred HHHHHHHHH--------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHH
Confidence 888888766 347778999999999999999999999999999887 999999999
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
...++|..++|.+++++.+..+|++.|++.++..++.....++..|
T Consensus 136 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 136 PVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999988899999998877766665555444333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-21 Score=201.74 Aligned_cols=182 Identities=10% Similarity=0.021 Sum_probs=131.4
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHH-HHhhhhhhHHHHhhhccchHHHHH-HHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSG-TCYVMPLIGAFLADAYLGRYWTIA-SFS 104 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~-~~~ 104 (553)
...+..+..+...++.+++...+.+.++.|+++++|.|.++.|++.+...+ +..++.+++|+ +||+ ||||.++ .+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~ 89 (393)
T PRK15011 12 SFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCC 89 (393)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHH
Confidence 334556788888999999999999999999999999999999999776655 44455555555 9999 9888754 555
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhH
Q 008792 105 IIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFF 184 (553)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (553)
+...++..+.+++ .+++.+++.+.+.+...+...|...++..|..+++++. .+...
T Consensus 90 ~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 145 (393)
T PRK15011 90 LLGVLACTLFAWN--------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGRE----AVMFS 145 (393)
T ss_pred HHHHHHHHHHHHh--------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccch----HHHHH
Confidence 5555666665555 23555554444444444566777777777776655410 23445
Q ss_pred HHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 185 NWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
++.+.+.++|..+||.+++++.++.|||..|++.++..++..+..+...|
T Consensus 146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 78888999999999999999998899999998887766665555444444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=203.94 Aligned_cols=166 Identities=11% Similarity=0.049 Sum_probs=136.4
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|+++..+...++..++...+...++.. ..+++.+..+.+++.+.+.+...++.|++|+++||+ ||||+++.+.++..+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 445666777777777655555555544 578899999999999999999999999999999999 999999999999888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+.+.+.+.. + .++.|+++|++.+...|...+++.|.+|+++ |+++.++.+.
T Consensus 81 ~~~~~~~~~--------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~ 131 (393)
T PRK11195 81 GCLLMLFGI--------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEG 131 (393)
T ss_pred HHHHHHHHH--------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence 887766541 1 2678999999999999999999999999988 9999999999
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHH
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~ 227 (553)
..++|..+||.++|++.+. .|+..+.+.+...+++.+
T Consensus 132 ~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 132 STIAAILLGTVLGGALADP-HAEAALAVCALIYLLAAL 168 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 477666655544444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=202.69 Aligned_cols=177 Identities=15% Similarity=0.157 Sum_probs=144.5
Q ss_pred CccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 28 TWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
.|+.+.......+.......... ...+++.+++|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMG-FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence 44544444445555555444443 444556678999999999999999999999999999999999 9999999999888
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
.++.++..+. .+.+.+++.+++.|++.+...+...+++.|.+|+++ |++++++.
T Consensus 93 ~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 146 (398)
T TIGR00895 93 SVFTLLCALA--------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLM 146 (398)
T ss_pred HHHHHHHHHc--------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhH
Confidence 8888877765 347778899999999999999999999999999887 99999999
Q ss_pred HHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhc
Q 008792 188 YFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
+.+.++|..++|.+++++.+..+|++.|++.++..++.....+..
T Consensus 147 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 191 (398)
T TIGR00895 147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRF 191 (398)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHh
Confidence 999999999999999999988999999988765554444443333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-21 Score=199.40 Aligned_cols=174 Identities=8% Similarity=0.076 Sum_probs=145.5
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
+++|..+...+..++.......+-..+|. +.+++|.|..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 44566677777777777766655555655 5678999999999999999999999999999999999 999999999998
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
..++..++++. .+.+.+++.|+++|++.+...+...+++.|.+|+++ |++.++.
T Consensus 82 ~~i~~~l~~~~--------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~ 135 (394)
T PRK03699 82 MILAVAGLMFS--------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLF 135 (394)
T ss_pred HHHHHHHHHHc--------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHH
Confidence 88888888776 347788999999999999999999999999999877 9999998
Q ss_pred HHHHHHHHHHHhhhhheeec-ccccchhhhHHHHHHHHHHHHH
Q 008792 187 FYFSINIGALVAASCLVWIQ-TNVGWGWGFGIPAVAMAIAVVS 228 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~-~~~~~~~~f~i~~~~~~~~~~~ 228 (553)
.+...++|+.++|.+.+.+. +..+||+.|.+.++..++..+.
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 136 TDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 88888999999999888765 4579999998777665555443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=205.90 Aligned_cols=174 Identities=15% Similarity=0.145 Sum_probs=129.0
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcC---Cchhhhhh---HHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELN---QGNVQAVN---NVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI 105 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~s~~~~~~---~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 105 (553)
+....+..+++.+.... .++..+++.++++ .+..+.+. +.+...++..++.+++|+++||+ |||+++..+.+
T Consensus 24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~ 101 (432)
T PRK10406 24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 33444456666666554 5566677887774 44444333 33444555559999999999999 99999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 106 IYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
++++++++++++.++... ...+...+++.|+++|++.|...|...++++|.+|+++ |+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~ 163 (432)
T PRK10406 102 MMCFGSLVIACLPGYETI------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYAS 163 (432)
T ss_pred HHHHHHHHHhhcCCchhH------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHH
Confidence 999999998876321100 00124568899999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHhhhhheeec--------ccccchhhhHHHHHHHHHH
Q 008792 186 WFYFSINIGALVAASCLVWIQ--------TNVGWGWGFGIPAVAMAIA 225 (553)
Q Consensus 186 ~~~~~~~~G~~~~~~i~g~l~--------~~~~~~~~f~i~~~~~~~~ 225 (553)
+.+.+.+.|..+++.+...+. ..+|||++|++.++..++.
T Consensus 164 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 164 FQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 988888888888877655443 2579999998877655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-21 Score=199.47 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=138.2
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
.|.++..+...++...+...+.+.+|.|+. ++|.|..+.|++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 466788888899999998888899998875 6899999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++..+++++ .+.+.+++.|+++|++.+...|...+.+.|..++++ |++++++++
T Consensus 83 ~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 136 (381)
T PRK03633 83 AGCAGLGLM--------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYM 136 (381)
T ss_pred HHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 988888776 347889999999999999988888777888888777 999999999
Q ss_pred HHHHHHHHHhhhhheeecccccch
Q 008792 189 FSINIGALVAASCLVWIQTNVGWG 212 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~ 212 (553)
...++|..+||.+++.+.+...+.
T Consensus 137 ~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 137 MVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred HHHHHHHHHHHHHHhcccccccch
Confidence 999999999999999987754333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-21 Score=201.94 Aligned_cols=177 Identities=10% Similarity=0.041 Sum_probs=131.5
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhc--CCchhhhhhHH-----HHHHHHHhhhhhhHHHHhhhccchHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFEL--NQGNVQAVNNV-----TNWSGTCYVMPLIGAFLADAYLGRYWT 99 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--~~s~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Gr~~~ 99 (553)
..+|.++...+..+++.+....+....+.++.+++ +.++. .+++. +...++..++.++.|+++||+ |||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~ 96 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence 34565666667777777777665555555666554 56665 34443 234455678888899999999 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhh
Q 008792 100 IASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKK 179 (553)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (553)
+.++.+++++++++++++.++... .......+++.|+++|++.|...|....++.|.+|+++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------ 158 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTI------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------ 158 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHH------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------
Confidence 999999999999999887331110 00112358889999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhheeec--------ccccchhhhHHHHHHHH
Q 008792 180 KSSFFNWFYFSINIGALVAASCLVWIQ--------TNVGWGWGFGIPAVAMA 223 (553)
Q Consensus 180 r~~~~~~~~~~~~~G~~~~~~i~g~l~--------~~~~~~~~f~i~~~~~~ 223 (553)
|+...+..+.+..+|..+++.+..++. ..+|||+.|++.++..+
T Consensus 159 rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 159 KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 999999988888999988877665543 25799999988766543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-21 Score=200.45 Aligned_cols=172 Identities=12% Similarity=0.019 Sum_probs=143.2
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHH
Q 008792 26 TGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI 105 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 105 (553)
...||++.......++...+.+...+++++|+ +++|.|+.+.+++.+.+.++..++.++.|+++||+ ||||++..+..
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 46778888889999998888888888888888 56899999999999999999999999999999999 99999999998
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 106 IYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
+..++..++.+... . ..+.+.+++.|++.|++.+...+...+.+.+.+|+++ |+++++
T Consensus 87 ~~~~~~~~~~~~~~-~---------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g 144 (402)
T TIGR00897 87 LWCVGHAAFIVFGL-G---------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVG 144 (402)
T ss_pred HHHHHHHHHHHHhc-c---------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHH
Confidence 88888765532110 0 0246778889999999998877777788889999887 999999
Q ss_pred HHHHHHHHHH-HHhhhhheeecccccchhhhHHHHHH
Q 008792 186 WFYFSINIGA-LVAASCLVWIQTNVGWGWGFGIPAVA 221 (553)
Q Consensus 186 ~~~~~~~~G~-~~~~~i~g~l~~~~~~~~~f~i~~~~ 221 (553)
+.+.+.++|. .++|.+++++.+..||+..++.....
T Consensus 145 ~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 145 WFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 9999999996 58999999988888876665544433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-21 Score=198.50 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=148.3
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHH
Q 008792 26 TGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI 105 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 105 (553)
.+.+|.++......++..+......+.+|.+ .+++|.|+.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~ 81 (394)
T PRK11652 4 QRNVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMS 81 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHH
Confidence 3466777777777777777777666666654 578999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 106 IYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
...++.+++... .+.+.+++.|++.|++.+...+....+..|.+++++ |+++.+
T Consensus 82 ~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 135 (394)
T PRK11652 82 IFILGTLVALFA--------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANS 135 (394)
T ss_pred HHHHHHHHHHHH--------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHH
Confidence 888888887765 347788999999999998877877888888888776 889999
Q ss_pred HHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHH
Q 008792 186 WFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSF 229 (553)
Q Consensus 186 ~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~ 229 (553)
+.+.+..+|..++|.+++++.+..||++.|++.++..++.....
T Consensus 136 ~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 136 LLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999988776555444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=195.38 Aligned_cols=346 Identities=19% Similarity=0.248 Sum_probs=250.7
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMT 112 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 112 (553)
+......+......+...+..+.|. ++++.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence 3455667778888887888888776 46799999999999999999999999999999999 999999999999999998
Q ss_pred HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 113 ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
+..+. .+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...+
T Consensus 80 ~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 133 (352)
T cd06174 80 LLAFA--------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFG 133 (352)
T ss_pred HHHHh--------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHH
Confidence 88876 347889999999999999999999999999999988 9999999999999
Q ss_pred HHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcccccccc
Q 008792 193 IGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDH 272 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (553)
+|..++|.+++.+.+..+|++.+++.++..++......... +
T Consensus 134 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--------------------------- 175 (352)
T cd06174 134 LGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-----------R--------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------H---------------------------
Confidence 99999999999999988999999888877666655443321 0
Q ss_pred CCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHh-HHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCc
Q 008792 273 TKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIR-LLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSF 351 (553)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (553)
++.. .+................+.+... .. +. .
T Consensus 176 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~---~ 209 (352)
T cd06174 176 --------------------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQE-VL----GL---S 209 (352)
T ss_pred --------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hc----CC---C
Confidence 0000 000111111111111111111100 00 00 0
Q ss_pred ccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008792 352 EIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQ-RIAIGLVISIFAMLTAGTLELVRLREVKKHNYYEL 430 (553)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~-~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 430 (553)
....+.......+..++..++.++ +.+|..+| + .+..+..+..++.+.....
T Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~---------------- 262 (352)
T cd06174 210 AAEAGLLLSLFGLGGILGALLGGL----LSDRLGRR-------RLLLLIGLLLAALGLLLLALA---------------- 262 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-------hHHHHHHHHHHHHHHHHHHHh----------------
Confidence 011122333334444455555544 45554322 4 5677777777777766653
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCcc
Q 008792 431 KHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIP 510 (553)
Q Consensus 431 ~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~ 510 (553)
.+.+...+..++.+++.+...+...+++.|..|++.|++.+|+.+....++..+++.+.+.+.+..
T Consensus 263 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~---------- 328 (352)
T cd06174 263 ----PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG---------- 328 (352)
T ss_pred ----ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------
Confidence 235666778899999999999999999999999999999999999999999999999999886521
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008792 511 DNLNYGNLHYFFWLLALLSVLNLGVYL 537 (553)
Q Consensus 511 ~~~~~~~~~~~f~i~~~~~~v~~~~~~ 537 (553)
++...+++.+++.+++.+..+
T Consensus 329 ------~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 329 ------GYGGVFLILAALALLAALLLL 349 (352)
T ss_pred ------CcchHHHHHHHHHHHHHHHhe
Confidence 123356777777777666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=207.83 Aligned_cols=175 Identities=12% Similarity=0.055 Sum_probs=135.6
Q ss_pred CccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 28 TWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
+++.+.......++.....+.+.+.+| ++.+++|.|..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 445555555556666666665555444 56789999999999999999999999999999999999 9999999999888
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
+++.++.+++ .+.+.+++.|+++|++.+...+ ...++.|.+|+++ |++++++.
T Consensus 112 ~~~~~~~~~~--------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~ 164 (476)
T PLN00028 112 APAVFCMSLV--------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIA 164 (476)
T ss_pred HHHHHHHHHh--------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHH
Confidence 8888877766 2467788899999998886543 4567889999988 99999998
Q ss_pred HHHHHHHHHHhhhhheeecc---------cccchhhhHHHHHHHHHHHHHHHh
Q 008792 188 YFSINIGALVAASCLVWIQT---------NVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~---------~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
+...++|+.+++.+.+.+.. ..|||+.|++.+++.++..+..+.
T Consensus 165 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 165 AGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877666654421 258999999888776655544443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=207.77 Aligned_cols=386 Identities=13% Similarity=0.072 Sum_probs=226.7
Q ss_pred HhhhhcCCc---hhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 008792 56 YLRFELNQG---NVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNV 132 (553)
Q Consensus 56 yl~~~l~~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (553)
.+.++++.+ ..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.++.+++
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~--------------- 177 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS--------------- 177 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---------------
Confidence 356788998 88999999999999999999999999999 99999999999999988888876
Q ss_pred cCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccch
Q 008792 133 CHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWG 212 (553)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~ 212 (553)
.+++.+++.|++.|++.+...+...+++.|.+|+++ |+.+.++.+.+..+|.+++|.+++.+.+ ||
T Consensus 178 -----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr 243 (505)
T TIGR00898 178 -----PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WR 243 (505)
T ss_pred -----ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HH
Confidence 358889999999999999999999999999999988 9999999999999999999988766543 99
Q ss_pred hhhHHHHHHHHHHHHHHHhccceeecc-CCCCChHHHHHHhhhh-hccchhhhhccccccccCCccchhhhccccCCCCc
Q 008792 213 WGFGIPAVAMAIAVVSFFAGSRLYRYQ-KPGGSPLTRICQSLLY-ETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDC 290 (553)
Q Consensus 213 ~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (553)
+.|++.++..++..+..++ .++.++. ..++.. .+..+.... ...++ . . ...+..+.. .. +...
T Consensus 244 ~~~~~~~i~~~~~~~~~~~-~~esp~~l~~~~~~-~~a~~~l~~~~~~~~------~-~----~~~~~~~~~-~~-~~~~ 308 (505)
T TIGR00898 244 WLQLAVSLPTFLFFLLSWF-VPESPRWLISQGRI-EEALKILQRIAKING------K-K----LPAEVLSLS-LE-KDLS 308 (505)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCChHHHHHCCCH-HHHHHHHHHHHHHcC------C-C----CCHHHHhhh-hh-hhhh
Confidence 9998887766665555433 3322110 001110 000000000 00000 0 0 000000000 00 0000
Q ss_pred CCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHH
Q 008792 291 VKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWV 370 (553)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 370 (553)
+......++.... ....++..+.....+.... ..+... ..+.. ..+ .+.........+..+...
T Consensus 309 ~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~-------~~~----~~~~~~~~~~~~~~i~~~ 372 (505)
T TIGR00898 309 SSKKQYSFLDLFR-TPNLRKTTLCLMMLWFTTA---FSYYGL-VLDLG-------NLG----GNIYLDLFISGLVELPAK 372 (505)
T ss_pred hccCCCcHHHHhC-ChHHHHHHHHHHHHHHHHH---HHHHHH-hcccc-------ccC----CChHHHHHHHHHHHHHHH
Confidence 0000000000000 0001111111111111111 111000 11110 001 011111111122222223
Q ss_pred HhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHH
Q 008792 371 PIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCA 450 (553)
Q Consensus 371 ~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~ 450 (553)
.+... +.+|.. +++.+..++++.+++.+.+.... ....++.+...++.+++
T Consensus 373 ~~~~~----l~dr~g-------rr~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~ 423 (505)
T TIGR00898 373 LITLL----LIDRLG-------RRYTMAASLLLAGVALLLLLFVP------------------VDLYFLRTALAVLGKFG 423 (505)
T ss_pred HHHHH----HHHHhC-------CHHHHHHHHHHHHHHHHHHHHcC------------------CCchHHHHHHHHHHHHH
Confidence 33333 455533 33556666666666666555431 01223444455666677
Q ss_pred HHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHH
Q 008792 451 EVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSV 530 (553)
Q Consensus 451 ~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~ 530 (553)
....++..+.+..|..|++.|++++|+.+....+|+.++|.+.+ +.+. +....+++++++.+
T Consensus 424 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-----------------~~~~~~~~~~~~~~ 485 (505)
T TIGR00898 424 ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-----------------WLFLPLVLFGGLAL 485 (505)
T ss_pred HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-----------------HHhhHHHHHHHHHH
Confidence 77778888999999999999999999999999999999999887 3321 11234667777766
Q ss_pred HHHHHHHHHHhhcccccccc
Q 008792 531 LNLGVYLMVARCYTYKKLVV 550 (553)
Q Consensus 531 v~~~~~~~~~~~~~~~~~~~ 550 (553)
++.++. .+.++++++++++
T Consensus 486 ~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 486 LAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred HHHHHH-HcCcCCCCCCCCC
Confidence 665554 4557887776654
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=202.75 Aligned_cols=176 Identities=18% Similarity=0.107 Sum_probs=130.1
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhh-hhh-----HHHHHHHHHhhhhhhHHHHhhhccchHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQ-AVN-----NVTNWSGTCYVMPLIGAFLADAYLGRYWTIAS 102 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~ 102 (553)
+|.+....+..+++.+.+..+ ....+++.+.++.+.++ ..+ +.+...++..++.++.|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVY-GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 455566667777777766554 44555777777543322 122 24666788899999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhh
Q 008792 103 FSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182 (553)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 182 (553)
+.+++++++++++++.++... .......+++.|+++|++.|+..+...++++|++|+++ |++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~ 154 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATI------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGF 154 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHH------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcH
Confidence 999999999999988331110 00011248899999999999999999999999999988 999
Q ss_pred hHHHHHHHHHHHHHHhhhhheeec--------ccccchhhhHHHHHHHHH
Q 008792 183 FFNWFYFSINIGALVAASCLVWIQ--------TNVGWGWGFGIPAVAMAI 224 (553)
Q Consensus 183 ~~~~~~~~~~~G~~~~~~i~g~l~--------~~~~~~~~f~i~~~~~~~ 224 (553)
+.++...+..+|..+|+.+...+. ..+|||+.|++.++..++
T Consensus 155 ~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 155 MGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 999988888888888776554332 257999999987654443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=202.43 Aligned_cols=357 Identities=14% Similarity=0.114 Sum_probs=235.2
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.+...+......+++.+....-++-++ .++.-|+...+++.....+-..+..+++|.++||+ .|||+++.+.++..+
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence 3444555666666776665544454444 35677888999999999999999999999999999 999999999887777
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
....+++...... .+.+.+++.-++.|++.+...|+.++++.|++|+++ ..++.++.++
T Consensus 88 ~~~~L~~l~~~~~---------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~ 146 (524)
T PF05977_consen 88 VALLLAVLAFFGL---------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSI 146 (524)
T ss_pred HHHHHHHHHHhCc---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHH
Confidence 6665554422222 458888999999999999999999999999999988 8999999999
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccc
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHK 269 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (553)
..|+...+||.++|.+....|-.+.|.+.++..++.+..+...+++.++++ .+.....+..
T Consensus 147 ~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~---~~~e~~~~~l---------------- 207 (524)
T PF05977_consen 147 SFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSS---LPRERFFSAL---------------- 207 (524)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc---cchhhhhhhH----------------
Confidence 999999999999999998899999999998877776655544433221111 1100000000
Q ss_pred cccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCC
Q 008792 270 LDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDN 349 (553)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (553)
...++ .....+.+...+.......++........+.+.. ..++
T Consensus 208 -------------------------~~G~r-----yv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~------~~l~- 250 (524)
T PF05977_consen 208 -------------------------REGLR-----YVRSSPPLRSVLLRSFLFNLFASAVWALLPLFAR------DVLG- 250 (524)
T ss_pred -------------------------HHHHH-----HHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHH------HHhC-
Confidence 00000 0011111111111111111111111111111111 1111
Q ss_pred Cccccccc---ccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008792 350 SFEIPSAS---LSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHN 426 (553)
Q Consensus 350 ~~~~~~~~---~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 426 (553)
..+.. +....+++.++...+..+ +.+| .+..+.+..+.++.+++++.+++.
T Consensus 251 ---~~a~~yGll~a~~gvGai~Gal~~~~----l~~~-------~~~~~lv~~~~~~~a~~~~~lal~------------ 304 (524)
T PF05977_consen 251 ---GGASGYGLLLAAFGVGAILGALLLPR----LRRR-------LSSRRLVLLASLLFALALLLLALS------------ 304 (524)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-------cCcchhhHHHHHHHHHHHHHHhcc------------
Confidence 11221 222222333333332222 2333 344456677777777777777664
Q ss_pred cccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhcccc
Q 008792 427 YYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDF 499 (553)
Q Consensus 427 ~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~ 499 (553)
.+.+..++..++.|++.....+..++.+++..|+++||++++++++....+..+|..+.|.+.+.
T Consensus 305 --------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 305 --------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH 369 (524)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677788899999999999999999999999999999999999999999999999988764
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=197.80 Aligned_cols=180 Identities=19% Similarity=0.181 Sum_probs=159.2
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
++.+.+++.+...+++.-|.+-..+ .-.++.+|++++..|++...+.+.+.+++|++|+++||+ .||+++.+|..++.
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWT 109 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHH
Confidence 3455666677777777777665533 446778999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++.++.+++ ..+|++.+.|.+.|+|.+.+.|.++++++|.+|+.+ |++.++++|
T Consensus 110 ~Av~~~~fs--------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify 163 (493)
T KOG1330|consen 110 LAVFASGFS--------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFY 163 (493)
T ss_pred HHHHHHHHH--------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhh
Confidence 999999988 469999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHHHHHhcccee
Q 008792 189 FSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVVSFFAGSRLY 236 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~~~ 236 (553)
+..++|..+|.+++..+....+ |||+|++.+++.++..++.++..++.
T Consensus 164 ~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 164 FAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred hhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCc
Confidence 9999999999999999988766 99999999999888877777665543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=195.37 Aligned_cols=364 Identities=10% Similarity=-0.025 Sum_probs=225.1
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHH-HHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI-IYVIG 110 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~-~~~i~ 110 (553)
.+.+....++...++....+++|.|++ ++|.|..+.+++.+.+.+...++.++.|.++||+ ||++....... ...+.
T Consensus 6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~ 83 (382)
T TIGR00902 6 FRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF 83 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence 344556666677777778899999985 6899999999999999999999999999999999 87543322211 11111
Q ss_pred HH-HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 111 MT-ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 111 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
.. ....+ .+++.+++.|++++.+.+...|...++..+. +++ |++.++....
T Consensus 84 ~~~~~~~~--------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~ 135 (382)
T TIGR00902 84 AAAFSAGA--------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRL 135 (382)
T ss_pred HHHHHHhh--------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHH
Confidence 11 12222 3578888999999999888888887776542 333 8889999999
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccc
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHK 269 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (553)
..++|.+++|.+++++.+.+||+..|++.....++.+.. +...++.+++++ +++
T Consensus 136 ~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~------------------------ 189 (382)
T TIGR00902 136 IGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTIPPKDA-IPE------------------------ 189 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCCCCCcc-ccc------------------------
Confidence 999999999999999999999999988765443333222 222221110000 000
Q ss_pred cccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHh-HHHHHHHHHHHHHhhccccceEEeeecccCcCCC
Q 008792 270 LDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIR-LLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHID 348 (553)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (553)
.+... ...++ ...+.|+++. ....++........+...+.++ . + .+
T Consensus 190 ---~~~~~-----------------~~~~~-----~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l-~-----~--~g 236 (382)
T TIGR00902 190 ---DESQG-----------------DSAFI-----ALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYW-Q-----A--AG 236 (382)
T ss_pred ---ccccc-----------------chhHH-----HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----H--CC
Confidence 00000 00000 0001112211 1111111122222222111111 1 1 11
Q ss_pred CCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008792 349 NSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYY 428 (553)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 428 (553)
.+....+....+ ..+...+...+..++.|| +++++.+..+.++.++........
T Consensus 237 ----~s~~~~g~l~~~-~~~~~i~~~~~~~~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~-------------- 290 (382)
T TIGR00902 237 ----ISASATGLLWGI-GVLAEIIIFAFSNKLFQN-------CSARDLLLISAIACVGRWAIIGAI-------------- 290 (382)
T ss_pred ----CCHhHHHHHHHH-HHHHHHHHHHHhHHHHhh-------CCHHHHHHHHHHHHHHHHHHHHhH--------------
Confidence 222222222111 222222222222234555 566677888888888888777654
Q ss_pred cCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHH-HHHHHHHHHhhHhhhhccccccCCCCCC
Q 008792 429 ELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTAALGNYLSTLLVNIVTDFSTRHGKPG 507 (553)
Q Consensus 429 ~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~ig~~l~~~i~~~~~~~~~~~ 507 (553)
.+.+.+++..++.+++.+...+....++.+. |++.|++++++++ ...++|..+|+.+.|.+.|..+
T Consensus 291 ------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g------ 357 (382)
T TIGR00902 291 ------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG------ 357 (382)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 3556667678999999999999999999988 9999999999987 5678999999999998876432
Q ss_pred CccCCCCCCchHHHHHHHHHHHHHHHH
Q 008792 508 WIPDNLNYGNLHYFFWLLALLSVLNLG 534 (553)
Q Consensus 508 w~~~~~~~~~~~~~f~i~~~~~~v~~~ 534 (553)
. ..|++.+++++++.+
T Consensus 358 ----------~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 358 ----------A-GTFVFMAIIAAAAFF 373 (382)
T ss_pred ----------H-HHHHHHHHHHHHHHH
Confidence 1 357777777776543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=195.92 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=136.2
Q ss_pred HHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008792 45 AYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLK 124 (553)
Q Consensus 45 ~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (553)
+.....+.+|. +.++++.+..+.++..+.+.++..++.++.|+++||+ |||++++.+.++..++..++.++
T Consensus 31 ~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------- 101 (413)
T PRK15403 31 TTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------- 101 (413)
T ss_pred HHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------
Confidence 33444444554 5778999999999999999999999999999999999 99999999999999999888876
Q ss_pred CCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhhee
Q 008792 125 PLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVW 204 (553)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~ 204 (553)
.+++.++++|+++|++.+...+...+++.|.+|+++ |++.+++.+...++|..+||.+++.
T Consensus 102 -------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~ 162 (413)
T PRK15403 102 -------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAA 162 (413)
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348889999999999988766666788889999887 8999999999999999999999999
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 205 IQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 205 l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
+.+..|||+.|++.++..++..+..+.
T Consensus 163 l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 163 LMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 988889999999888776666554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-21 Score=202.95 Aligned_cols=158 Identities=16% Similarity=0.087 Sum_probs=129.2
Q ss_pred HHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 008792 53 LVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNV 132 (553)
Q Consensus 53 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (553)
..+++++ +|.|..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++.+++..+.+...+.
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------ 114 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA------------ 114 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc------------
Confidence 3446665 599999999999999999999999999999999 99999999988888888776654211
Q ss_pred cCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheee-cccccc
Q 008792 133 CHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWI-QTNVGW 211 (553)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l-~~~~~~ 211 (553)
..+...+++.|++.|++.+...+.....+.|.+|+++ |++++++++.+.++|+.++|.+.+.. ....+|
T Consensus 115 ----~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 115 ----TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred ----cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 1246677888999999999988888899999999988 99999999999999999998877754 345789
Q ss_pred hhhhHHHHHHHHHHHHHHHhccc
Q 008792 212 GWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 212 ~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
|+.|++.++..++..+..++..+
T Consensus 185 ~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 185 HAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999887776665444444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=199.99 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=134.4
Q ss_pred HHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 008792 53 LVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNV 132 (553)
Q Consensus 53 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (553)
..+++.+++|.|..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++.++.++.
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--------------- 80 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS--------------- 80 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---------------
Confidence 34567889999999999999999999999999999999999 99999999999999999888877
Q ss_pred cCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhh-hhheeecccccc
Q 008792 133 CHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAA-SCLVWIQTNVGW 211 (553)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~i~g~l~~~~~~ 211 (553)
.+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++| .+++.+.+..+|
T Consensus 81 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 149 (379)
T TIGR00881 81 -----TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW 149 (379)
T ss_pred -----hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence 347889999999999999999999999999999988 99999999999999999999 566777777899
Q ss_pred hhhhHHHHHHHHHHHHHHHhcc
Q 008792 212 GWGFGIPAVAMAIAVVSFFAGS 233 (553)
Q Consensus 212 ~~~f~i~~~~~~~~~~~~~~~~ 233 (553)
++.|++.+++.++..+..+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 150 HWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred hhHHHHHHHHHHHHHHHHheee
Confidence 9999887766655544444433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-21 Score=205.32 Aligned_cols=167 Identities=17% Similarity=0.224 Sum_probs=143.3
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
.+|+.+.......+...+....+...+ +++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 455655566666666666665554444 556788999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.+++.+++++. .+++.+++.|++.|++.+...+...+++.|.+|+++ |++++++
T Consensus 95 ~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 148 (496)
T PRK03893 95 FSVGTLACGFA--------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGF 148 (496)
T ss_pred HHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 99998888876 357889999999999999999999999999999987 9999999
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHH
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVA 221 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~ 221 (553)
.+.+.++|..++|.+.+.+.+..+|++.|++.++.
T Consensus 149 ~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 149 LISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999999999999999999999999998865443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-21 Score=202.55 Aligned_cols=394 Identities=8% Similarity=-0.052 Sum_probs=224.2
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+..|......++...+++.+.++++.|+++++|.|..+.|++.+...+...+++++.|+++||+ |||++++++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 5677777888888888888999999999999999999999999999999999999999999999 999999887665554
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+..........+. . ......+..+.++..+...+.......++.++..+ .++..++..+.
T Consensus 89 ~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~g~~~~ 148 (420)
T PRK09528 89 LFGPFFIYVFAPL---------------L-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSR----RSGFEYGRARM 148 (420)
T ss_pred HHHHHHHHHHHHH---------------H-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHh----hccccchhhHH
Confidence 4332211100000 0 00011122222333332222222333333332111 16778888888
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccc
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHK 269 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (553)
..++|..++|.++|++.+ .+|++.|++.+++.++.+...+...++.++++. .++ ++ .
T Consensus 149 ~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~---~---- 205 (420)
T PRK09528 149 WGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAK-VAN--------------AL---G---- 205 (420)
T ss_pred hhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhh-hcc--------------ch---h----
Confidence 899999999999998876 589999988777666665554443332111100 000 00 0
Q ss_pred cccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHh-HHHHHHHHHHHHHhhccccceEEeeecccCcCCC
Q 008792 270 LDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIR-LLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHID 348 (553)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (553)
.+.+.....+.. ...+.+.++. .+........+.....+++.++.... .+...+
T Consensus 206 -~~~~~~~~~~~~----------------------~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 260 (420)
T PRK09528 206 -ANASAVSLKDAL----------------------ALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATPEQG 260 (420)
T ss_pred -cccccccHHHHH----------------------HHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcc
Confidence 000000000000 0000011111 11111111111112222222221110 010100
Q ss_pred CCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008792 349 NSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYY 428 (553)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 428 (553)
. ...+.......+...+..++.++ +.+|..+ ++.+..+.++.+++.+..++.
T Consensus 261 --~-~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~-------~~~~~~~~~l~~~~~~l~~~~-------------- 312 (420)
T PRK09528 261 --T-RVFGYLNSFQVFLEALIMFFAPF----IINRIGA-------KNALLLAGTIMAVRIIGSGFA-------------- 312 (420)
T ss_pred --h-HHHHHHHHHHHHHHHHHHHHHHH----HHHHhCc-------chhhHHHHHHHHHHHHHHHhc--------------
Confidence 0 00111222223333344444444 4566433 345666677777766666553
Q ss_pred cCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHH-HHHHHHHHHHHhhHhhhhccccccCCCCCC
Q 008792 429 ELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL-SLTTAALGNYLSTLLVNIVTDFSTRHGKPG 507 (553)
Q Consensus 429 ~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~ 507 (553)
.+.++++...++.+++.....+...+++.+..|++.+++..+. +++...+|..+++.+.+.+.|..+
T Consensus 313 ------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G------ 380 (420)
T PRK09528 313 ------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG------ 380 (420)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC------
Confidence 2445566667777888777777778899999999999988766 677889999999999998876432
Q ss_pred CccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 008792 508 WIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARC 542 (553)
Q Consensus 508 w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~ 542 (553)
+...|.+.+++.++..++.+...++
T Consensus 381 ----------~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 381 ----------FQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred ----------chHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2446777777777666666655543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=195.31 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=139.1
Q ss_pred HHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008792 45 AYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLK 124 (553)
Q Consensus 45 ~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (553)
+.....+.+|.+. +++|.|+.+.+++.+.+.++..++.+++|+++||+ |||+.+..+.++..++..++...
T Consensus 6 ~~~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~------- 76 (377)
T PRK11102 6 AIDMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA------- 76 (377)
T ss_pred HHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH-------
Confidence 3445567787776 56899999999999999999999999999999999 99999999999999998888876
Q ss_pred CCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhhee
Q 008792 125 PLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVW 204 (553)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~ 204 (553)
.+.+.+++.|+++|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++.
T Consensus 77 -------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~ 137 (377)
T PRK11102 77 -------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGW 137 (377)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778899999999999999999999999999888 9999999999999999999999999
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHHhc
Q 008792 205 IQTNVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 205 l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
+.+..+|++.|++.++..++........
T Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 138 LLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 9988999999988776666655444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-20 Score=194.74 Aligned_cols=172 Identities=13% Similarity=0.074 Sum_probs=125.8
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHH-HHHH-----HHHhhhhhhHHHHhhhccchHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNV-TNWS-----GTCYVMPLIGAFLADAYLGRYWTIAS 102 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~-~~~~-----~~~~~~~~~~G~laDr~~Gr~~~~~~ 102 (553)
|+.....++..+++.+....+. ...+.+.++++.+..+.+... +... +...++.++.|+++||+ ||||.++.
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence 3445555566666666665544 444567788988877654332 2222 22246788999999999 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhh
Q 008792 103 FSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182 (553)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 182 (553)
+.++++++.++++++.+++.. .......++++|+++|++.+...+...++++|.+|+++ |++
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~ 153 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATI------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGF 153 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHH------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chH
Confidence 999999999999887331110 00001246889999999999999988999999999998 999
Q ss_pred hHHHHHHHHHHHHHHhhhhheee--------cccccchhhhHHHHH
Q 008792 183 FFNWFYFSINIGALVAASCLVWI--------QTNVGWGWGFGIPAV 220 (553)
Q Consensus 183 ~~~~~~~~~~~G~~~~~~i~g~l--------~~~~~~~~~f~i~~~ 220 (553)
++++.+...++|..+++.+++.+ .+..|||++|++..+
T Consensus 154 ~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 154 YTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 99998888888888777777654 246799999987543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-20 Score=191.81 Aligned_cols=164 Identities=13% Similarity=0.135 Sum_probs=135.4
Q ss_pred HHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhc
Q 008792 40 CCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSAS 119 (553)
Q Consensus 40 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~ 119 (553)
++..++.....+.++. +++++|.++.+.++..+.+.++..++.+++|+++||+ |||+.+..+.++..++..++...
T Consensus 16 ~~~~~~~~~~~p~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~-- 91 (401)
T PRK11043 16 MLGFLATDMYLPAFKA-IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV-- 91 (401)
T ss_pred HHHHHHHHHHHhhHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh--
Confidence 3333444444444433 5678999999999999999999999999999999999 99999999998888888877766
Q ss_pred ccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhh
Q 008792 120 VHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAA 199 (553)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 199 (553)
.+++.+++.|+++|++.+...+...+++.|.+|+++ +++.++..+...++|..++|
T Consensus 92 ------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~ 147 (401)
T PRK11043 92 ------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAP 147 (401)
T ss_pred ------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHH
Confidence 347788999999999988877877888999999877 88888888888899999999
Q ss_pred hhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 200 SCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 200 ~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
.+++++.+..+|++.|++.++..++.....+.
T Consensus 148 ~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 148 LLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999899999998877666655544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-20 Score=190.62 Aligned_cols=169 Identities=14% Similarity=0.096 Sum_probs=140.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 008792 35 ILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTIL 114 (553)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~ 114 (553)
.....+....+.....+.+|. +.+++|.|..+.++..+.+.++..++.++.|+++||+ |||+.++.+.++..++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLC 85 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555 4677999999999999999999999999999999999 99999999999988888888
Q ss_pred HhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHH
Q 008792 115 TMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIG 194 (553)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 194 (553)
... .+.+.+++.|+++|++.+...+...+++.|.+|+++ |++++++.+...++|
T Consensus 86 ~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~ 139 (392)
T PRK10473 86 SLA--------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCII 139 (392)
T ss_pred HHh--------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHH
Confidence 765 246778889999999999988889999999999888 999999999999999
Q ss_pred HHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 195 ALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 195 ~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
..++|.+++.+.+..+|++.|++.++..++.....+.
T Consensus 140 ~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 140 PVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888889999998887666555544333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=189.51 Aligned_cols=390 Identities=13% Similarity=0.076 Sum_probs=224.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 008792 35 ILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTIL 114 (553)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~ 114 (553)
+.+..++...++-...+.++.|+++++|++..+.|++.+...++..+++++.|+++||+.+||+++.++.++.++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 44566677777777789999999999999999999999999999999999999999998334778888877777777776
Q ss_pred HhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccc--------cCCCCCchHhHhhhhhhHHH
Q 008792 115 TMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGA--------DQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~r~~~~~~ 186 (553)
.+. .+++.+++.|++.+++.+...+...+... |...... |.+.+|
T Consensus 87 ~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r~~G- 139 (418)
T TIGR00889 87 AQV--------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIRVMG- 139 (418)
T ss_pred HHh--------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ceeeeh-
Confidence 655 23666778888888877766665554322 2222223 555544
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCC-ChHHHHHHhhhhhccchhhhhc
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGG-SPLTRICQSLLYETADAEFAVI 265 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 265 (553)
.+|.++||.++|.+....+|. +|++.+++.++..+.. +..++.++++.+. .+..+
T Consensus 140 -----~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~----------------- 195 (418)
T TIGR00889 140 -----TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFA-LTLPDIPVAKSTAKMSIKV----------------- 195 (418)
T ss_pred -----hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHH-hcCCCCCCCccccccCHHH-----------------
Confidence 478888888888774333344 4556555555444332 2223221110000 00000
Q ss_pred cccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCc
Q 008792 266 GSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345 (553)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (553)
....++.+ ..++.+.....+..++............+.+..... .+.
T Consensus 196 -------~~~~~~~~------------------------~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~ 242 (418)
T TIGR00889 196 -------MLGLDAFI------------------------LFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFG--RNP 242 (418)
T ss_pred -------HhhhhHHH------------------------HhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhc--ccc
Confidence 00000000 000011011111111111111111111111110000 000
Q ss_pred CCCCCccc-ccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008792 346 HIDNSFEI-PSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKK 424 (553)
Q Consensus 346 ~~~~~~~~-~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~ 424 (553)
...+++.. ..+.......+..++...+.++ +.||+ ++++.+..+.++.+++...+....
T Consensus 243 ~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~----l~dr~-------g~r~~l~~~~~~~~v~~~l~~~~~--------- 302 (418)
T TIGR00889 243 EFADSFVVKNASIWMSLSQFSEIFFILTIPF----FLKRF-------GIKKVMLLSLVAWALRFGFFAYGD--------- 302 (418)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHcC---------
Confidence 00000000 0011122222233333344333 55563 344667777777777765554421
Q ss_pred cccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHH-HHHHHHHHHhhHhhhhccccccCC
Q 008792 425 HNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTAALGNYLSTLLVNIVTDFSTRH 503 (553)
Q Consensus 425 ~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~ig~~l~~~i~~~~~~~ 503 (553)
+.....+.+++..++.+++++...+....++.+..|++.|++++|+.+ ....+|..+||.+.+.+.+..+.+
T Consensus 303 -------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~ 375 (418)
T TIGR00889 303 -------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAY 375 (418)
T ss_pred -------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 001123344556788888888888888899999999999999999997 567899999999999887754321
Q ss_pred CCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008792 504 GKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTY 545 (553)
Q Consensus 504 ~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~ 545 (553)
.. .++...|++.+++.+++.++.+++.++..+
T Consensus 376 ~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 376 GT----------FDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred cC----------CchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 11 123556788888888888888777776644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=189.23 Aligned_cols=389 Identities=7% Similarity=-0.059 Sum_probs=225.7
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.+|......++...+...+.++++.|+++++|.+..+.+++.+.+.+...++.++.|+++||+ |||+.++.+....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4567888888999999999999999999999999999999999999999999999999999999 999999887766555
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+..........+.. .......+++.+++.|++.+...|...++..|..+ + ++..++..+.
T Consensus 81 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~ 140 (396)
T TIGR00882 81 LFAPFFIYVFGPLL------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARM 140 (396)
T ss_pred HHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhh
Confidence 44332211000000 00123345667888888888888877766655322 2 4456777788
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccc
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHK 269 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (553)
..++|..+||.++|.+.+ .+|+..|++.+++.++..+..+...++.+++ ++..+ +.+.
T Consensus 141 ~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----------------~~~~- 198 (396)
T TIGR00882 141 FGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS----ATVAN----------------ALGA- 198 (396)
T ss_pred hcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh----hhhhc----------------cccc-
Confidence 889999999999998765 5999999988776666554443332221110 00000 0000
Q ss_pred cccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCC
Q 008792 270 LDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDN 349 (553)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (553)
..++.+. ...+ +..++++.....+..+.....+.....+.+.+...... +...+
T Consensus 199 --~~~~~~~-----------------~~~~----~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~~- 252 (396)
T TIGR00882 199 --NASAFSL-----------------KLAL----ELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA--TPQQG- 252 (396)
T ss_pred --ccCCCCH-----------------HHHH----HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccc-
Confidence 0000000 0000 00011111111111111111111111111121111000 00000
Q ss_pred CcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008792 350 SFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYE 429 (553)
Q Consensus 350 ~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 429 (553)
. ...+.......+...+.....++ +.||.. +++.+.++.++.+++.......
T Consensus 253 -~-~~~g~~~~~~~i~~~~~~~~~g~----l~~r~g-------~~~~l~~~~~l~~l~~~~~~~~--------------- 304 (396)
T TIGR00882 253 -T-RVFGYVTTMGELLNALIMFCAPL----IINRIG-------AKNALLIAGTIMSVRIIGSSFA--------------- 304 (396)
T ss_pred -h-HHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-------cchhHHHHHHHHHHHHHHHHhc---------------
Confidence 0 00011112222222333333333 455543 3345666666666666554432
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHH-HHHHHHHHHHHhhHhhhhccccccCCCCCCC
Q 008792 430 LKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL-SLTTAALGNYLSTLLVNIVTDFSTRHGKPGW 508 (553)
Q Consensus 430 ~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w 508 (553)
.+.+++++..++.+++..........+..+..|++.+++..+. +++...+|+.+++.+.+.+.|..
T Consensus 305 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-------- 371 (396)
T TIGR00882 305 -----TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-------- 371 (396)
T ss_pred -----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc--------
Confidence 2455556666777777666666666777888888888887776 67889999999999999887632
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 008792 509 IPDNLNYGNLHYFFWLLALLSVLNLGVY 536 (553)
Q Consensus 509 ~~~~~~~~~~~~~f~i~~~~~~v~~~~~ 536 (553)
++...|.+.+++.++..+..
T Consensus 372 --------G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 372 --------GFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred --------ccHHHHHHHHHHHHHHHHHH
Confidence 33456777777666655543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-19 Score=187.54 Aligned_cols=358 Identities=13% Similarity=0.094 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc---cchHH-HHHHHHHHHHHHHHH
Q 008792 38 NECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY---LGRYW-TIASFSIIYVIGMTI 113 (553)
Q Consensus 38 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~~~~~~~~~~i~~~~ 113 (553)
..+..+.....+.++++.|+++.+|+++.++|++.+...+...+..|+.|+++||. +|||| .++.+.+..+++.++
T Consensus 7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~ 86 (437)
T TIGR00792 7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL 86 (437)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence 34566777777788899999999999999999999999999999999999999983 27755 566777777777777
Q ss_pred HHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHH
Q 008792 114 LTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINI 193 (553)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 193 (553)
+....+.+ .......+++.+++.+++.+...+...++..|..+++++ |++..++.+.+.++
T Consensus 87 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----R~~~~~~~~~~~~~ 147 (437)
T TIGR00792 87 LFTTPDFS--------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE-----RESLSTFRRFGATL 147 (437)
T ss_pred HHhCCCCC--------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH-----HHHHHHHHHHHHHH
Confidence 76542111 112355667778888888888888888889998854322 88999998888888
Q ss_pred HHHHhhhhheeec-------ccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcc
Q 008792 194 GALVAASCLVWIQ-------TNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIG 266 (553)
Q Consensus 194 G~~~~~~i~g~l~-------~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (553)
|..+++.+.+.+. +..+|++.+.+.+++.++.....+...++.+++.+.+++
T Consensus 148 g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~--------------------- 206 (437)
T TIGR00792 148 GGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE--------------------- 206 (437)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc---------------------
Confidence 8877766554443 246899888877776666555444433332111000000
Q ss_pred ccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcC
Q 008792 267 SHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLH 346 (553)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (553)
+..+..+. ++ ...+.|.+...+...+.....+........++..... . .
T Consensus 207 -------~~~~~~~~----------------~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~ 255 (437)
T TIGR00792 207 -------KKLSLKQI----------------FK-----ALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVL--G-D 255 (437)
T ss_pred -------cCCCHHHH----------------HH-----HHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeec--C-C
Confidence 00000000 00 0011112111111111111111122222223322111 0 0
Q ss_pred CCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008792 347 IDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHN 426 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 426 (553)
. ...+.......+..++..++.++ +.+|. ++++.+..+.++.+++.+......
T Consensus 256 ~-----~~~~~~~~~~~i~~ii~~~~~~~----l~~r~-------g~~~~~~~~~~~~~~~~~~~~~~~----------- 308 (437)
T TIGR00792 256 P-----ELFSYMGSIAIVAGLIGVLLFPR----LVKKF-------GRKILFAGGILLMVLGYLIFFFAG----------- 308 (437)
T ss_pred h-----HHHHHHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHcc-----------
Confidence 0 00111222223334444454444 45553 333556677777777666554421
Q ss_pred cccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccC-------hhhHHHHHHHHHHHHHHHHHHhhHhhhhcccc
Q 008792 427 YYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAP-------DAMRSLCSALSLTTAALGNYLSTLLVNIVTDF 499 (553)
Q Consensus 427 ~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~ 499 (553)
.+.+..++..++.+++.+...+..++++.|..| ++.+|.+.|++++...+|..+++.+.+.+.+.
T Consensus 309 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 309 --------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133445556677888888888888888888765 56789999999999999999999999988876
Q ss_pred cc
Q 008792 500 ST 501 (553)
Q Consensus 500 ~~ 501 (553)
.+
T Consensus 381 ~G 382 (437)
T TIGR00792 381 IG 382 (437)
T ss_pred cC
Confidence 54
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-19 Score=186.81 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=123.3
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
...+..+....+...+.........|. ++++++.|+.+.++..+.+.++..++.++.|+++||+ |||+++..+..+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~ 102 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 344455555556666666555555555 5899999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++.+++..... ..+++.++++|+++|+|.+...+..++++.|..|+++ |...++..+
T Consensus 103 ~~~~l~~~~~~-----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~ 159 (438)
T PRK10133 103 LGAALFWPAAE-----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQ 159 (438)
T ss_pred HHHHHHHHHHh-----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHH
Confidence 99987642210 0358889999999999999999999999998766655 666788888
Q ss_pred HHHHHHHHHhhhhheee
Q 008792 189 FSINIGALVAASCLVWI 205 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l 205 (553)
....+|..+||.+++.+
T Consensus 160 ~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 160 TFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999999887654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-20 Score=217.38 Aligned_cols=135 Identities=10% Similarity=0.073 Sum_probs=107.3
Q ss_pred hhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHH--HHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHH
Q 008792 66 VQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI--IYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVF 143 (553)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (553)
...++..+++.+...++.+++|+++||+ |||+++..... +......+.+... .+++.+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~-------------------~s~~~l 111 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL-------------------NSVPLL 111 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhHHHH
Confidence 3467778889999999999999999999 99998644222 1222222222110 258889
Q ss_pred HHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHH
Q 008792 144 FVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMA 223 (553)
Q Consensus 144 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~ 223 (553)
+++|+++|++.+...|...+++.|++|+++ |++++++.+++.++|.++||.++|++....+|++.|...++..+
T Consensus 112 ~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~ 185 (1140)
T PRK06814 112 FAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAV 185 (1140)
T ss_pred HHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 999999999999999999999999999988 99999999999999999999999999999999998844444333
Q ss_pred HHH
Q 008792 224 IAV 226 (553)
Q Consensus 224 ~~~ 226 (553)
+++
T Consensus 186 ~~~ 188 (1140)
T PRK06814 186 LGW 188 (1140)
T ss_pred HHH
Confidence 333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-20 Score=194.48 Aligned_cols=379 Identities=15% Similarity=0.164 Sum_probs=239.6
Q ss_pred hcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchh
Q 008792 60 ELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQ 139 (553)
Q Consensus 60 ~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (553)
.++.+..+.+++.+.+..+..++.+++|+++||+ |-|+++..+.++.++++++.+++.. .+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~------------------~~ 127 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS------------------IG 127 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH------------------hc
Confidence 5778889999999999999999999999999999 9999999999999999999998854 33
Q ss_pred HHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccc-ccchhhhHHH
Q 008792 140 IAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTN-VGWGWGFGIP 218 (553)
Q Consensus 140 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~-~~~~~~f~i~ 218 (553)
.+.+++.|+++|++.|...|+...+.+++.|+.| |++..++...+..+|.+++..++|++.+. +||+.+||+.
T Consensus 128 ~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~ 201 (466)
T KOG2532|consen 128 FYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVF 201 (466)
T ss_pred chhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHH
Confidence 4578999999999999999999999999999999 99999999999999999999999999988 9999999999
Q ss_pred HHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcCCCCCCcc
Q 008792 219 AVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAW 298 (553)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (553)
+.+.++..++++....+.|.+.|.-++.. .+ . ++..+...... .....||
T Consensus 202 g~~g~i~~~~w~~~~~d~P~~h~~is~~E--l~-----------------~---------I~~~k~~~~~~--~~~~vP~ 251 (466)
T KOG2532|consen 202 GIVGLIWFILWFLFYSDSPSKHPNISEKE--LK-----------------Y---------IEKGKSEAHVK--KKPPVPY 251 (466)
T ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHH--HH-----------------H---------HHhcccccccC--CCCCCCH
Confidence 99888888887776655544433222210 00 0 11100000000 0012233
Q ss_pred ccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHH
Q 008792 299 RLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIV 378 (553)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~ 378 (553)
+..... .......+..+.....++...++.++++-.- ..++.. ..+..+.+..+...+...+.+.+.+
T Consensus 252 ~~i~ts----~~vwai~~~~f~~~~~~~~l~~y~PtY~~~V-L~f~v~-------~~G~~salP~l~~~~~k~~~g~lsD 319 (466)
T KOG2532|consen 252 KAILTS----PPVWAIWISAFGGNWGFYLLLTYLPTYLKEV-LGFDVR-------ETGFLSALPFLAMAIVKFVAGQLSD 319 (466)
T ss_pred HHHHcC----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hCCChh-------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 211100 0111112222222233333333333333211 111111 2334445555555555555555544
Q ss_pred hhhhhhcCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhh
Q 008792 379 PLARKFTGHKNGFTQLQRI--AIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFI 456 (553)
Q Consensus 379 ~l~~r~~~~~~~~~~~~~~--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~ 456 (553)
++.+| . .. ....+++ .++....+++++.+++.. + .+.+..+..+.+.....++..+
T Consensus 320 ~l~~~-~-ls--~t~~rkifn~i~~~~~ai~l~~l~~~~----------------~--~~~~~a~~~l~~~~~~~g~~~~ 377 (466)
T KOG2532|consen 320 RLTFR-I-LS--ETTVRKIFNTIAFGGPAVFLLVLAFTS----------------D--EHRLLAVILLTIAIGLSGFNIS 377 (466)
T ss_pred HHhhc-c-Cc--hHhHHHHHHhHHHHHHHHHHHeeeecC----------------C--CcchHHHHHHHHHHHHcccchh
Confidence 44444 1 10 1222233 455555566666665541 0 1112222222222122222223
Q ss_pred hhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 008792 457 GQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVY 536 (553)
Q Consensus 457 ~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~ 536 (553)
..+.-..+.+| ++-+..+|+.++...+.+.++|.+++.+.. .. ....| ..+|++.+++.+++.+++
T Consensus 378 Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~--t~~eW----------~~VF~i~a~i~~~~~i~f 443 (466)
T KOG2532|consen 378 GFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN--TREEW----------RIVFLIAAGILIVGNIIF 443 (466)
T ss_pred hhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC--CHHHH----------HHHHHHHHHHHHHhchhe
Confidence 32333333354 678899999999999999999999998764 11 12235 568899999999999888
Q ss_pred HHHHh
Q 008792 537 LMVAR 541 (553)
Q Consensus 537 ~~~~~ 541 (553)
.++..
T Consensus 444 ~~f~s 448 (466)
T KOG2532|consen 444 LFFGS 448 (466)
T ss_pred eEeec
Confidence 87753
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-19 Score=183.48 Aligned_cols=337 Identities=10% Similarity=0.052 Sum_probs=203.2
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchH----HHHHHHHHHHHHHHHHH
Q 008792 39 ECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRY----WTIASFSIIYVIGMTIL 114 (553)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~----~~~~~~~~~~~i~~~~~ 114 (553)
.++...++..+.+++|.|++ ++|.|..+.|++.+.+.+...++.++.|.++||+ ||+ +.+.+..... .....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHH
Confidence 55566667778899999985 5799999999999999999999999999999999 984 2222221111 11111
Q ss_pred HhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHH
Q 008792 115 TMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIG 194 (553)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 194 (553)
... .+++.+++.|++.|++.+...|...++..|. .++ |++.++..+...++|
T Consensus 89 ~~~--------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~lg 140 (382)
T PRK11128 89 FGA--------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGSIA 140 (382)
T ss_pred Hhc--------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHHHH
Confidence 111 3578888999999999998888887777765 233 778888888889999
Q ss_pred HHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCC
Q 008792 195 ALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTK 274 (553)
Q Consensus 195 ~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (553)
.++||.+++++.+++|||..|++.++..++..+... ..++ .+|++++. + +.+
T Consensus 141 ~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~---~~~~~~~~----------------------~--~~~ 192 (382)
T PRK11128 141 FVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPT---IMPQGESR----------------------Q--QES 192 (382)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCC---CCCccccc----------------------c--ccc
Confidence 999999999999999999999877754444433222 2221 11110000 0 000
Q ss_pred ccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHH-HHHHHHHHHHhhccccceEEeeecccCcCCCCCccc
Q 008792 275 QLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLP-IWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEI 353 (553)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (553)
+ ....++ +..+.+.++.... .++............+.+. . +.... ..
T Consensus 193 ~------------------~~~~~~-----~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-----~~g~s---~~ 240 (382)
T PRK11128 193 A------------------GWPAWK-----ALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW-Q-----AAGYS---AS 240 (382)
T ss_pred c------------------ccchHH-----HHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH-H-----HCCCC---Hh
Confidence 0 000000 0111122221111 1111111111111111111 1 11100 00
Q ss_pred ccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCc
Q 008792 354 PSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHI 433 (553)
Q Consensus 354 ~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 433 (553)
..+.......+..++...+.+ ++.|| .++++.+..+.+..+++++.....
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~g----~l~~r-------~~~~~~l~~~~~~~~~~~~~~~~~------------------- 290 (382)
T PRK11128 241 TIGYLWSLGVVAEVLIFAFSN----RLFRR-------WSARDLLLLSAICGVVRWGLMGST------------------- 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHH-------CCHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 011111122222222223333 34555 445566777777777776665543
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHH-HHHHHHHHHhhHhhhhcccc
Q 008792 434 PMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTAALGNYLSTLLVNIVTDF 499 (553)
Q Consensus 434 ~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~ig~~l~~~i~~~ 499 (553)
.+.+++++..++.+++.+...+....+..+. |++.+++..++.+ ....+|..+|+.+.|.+.|.
T Consensus 291 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~ 355 (382)
T PRK11128 291 -TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH 355 (382)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2455667778888999998888888888887 5566788899887 55678889999999988764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-19 Score=210.67 Aligned_cols=155 Identities=10% Similarity=0.036 Sum_probs=124.4
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCch--hhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGN--VQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
+.+...++..++.++...+....+..++...++.+. ...+++.+++.++..++.+++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 445556666666666665555556666655565543 3468888999999999999999999999 9999999988766
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
.+..++..+.... .+++.+++.|+++|++.+...|...+++.|++|+++ |++++++.
T Consensus 88 ~~~~~~~~~~~~~-----------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~ 144 (1146)
T PRK08633 88 VGLTLLIVLAYYL-----------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLL 144 (1146)
T ss_pred HHHHHHHHHHHHH-----------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHH
Confidence 6666554443211 247889999999999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHhhhhheeeccc
Q 008792 188 YFSINIGALVAASCLVWIQTN 208 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~ 208 (553)
+.+.++|.++||.+++++...
T Consensus 145 ~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 145 EAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988765
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=190.36 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=135.8
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
+++...+..+......+...+++|.++++++|.|..+.+++.+.+.++..++.++.|+++||+ |||+.++++.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP 80 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 456677777777888888888888789999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCch-hHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGL-QIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
.+++++. . +++.+++.|+++|++.+.. +...++++|.+|+++ |+++.++...
T Consensus 81 ~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~ 133 (366)
T TIGR00886 81 CLWAGLA--------------------VQSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAG 133 (366)
T ss_pred HHHHHHH--------------------hhhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHH
Confidence 9888876 3 4788889999999996654 556889999999888 9999999888
Q ss_pred HHHHHHHHhhhhheeecc----------cccchhhhHH
Q 008792 190 SINIGALVAASCLVWIQT----------NVGWGWGFGI 217 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~----------~~~~~~~f~i 217 (553)
..++|..+++.+++.+.. ..+|++.|++
T Consensus 134 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 134 WGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 888888888777765543 3489999843
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=186.28 Aligned_cols=389 Identities=10% Similarity=0.058 Sum_probs=230.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHH
Q 008792 69 VNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLY 148 (553)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (553)
+.+++++.+++++|+.++|+++||+ |||..++++.++..++.++..++...+ ...+++++|+
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~-----------------~~e~li~GR~ 124 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP-----------------SFEMLILGRL 124 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHH
Confidence 4567889999999999999999999 999999999998888888887764333 4889999999
Q ss_pred HHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhhe--eecccccchhhhHHHHHHHHHHH
Q 008792 149 LIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLV--WIQTNVGWGWGFGIPAVAMAIAV 226 (553)
Q Consensus 149 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g--~l~~~~~~~~~f~i~~~~~~~~~ 226 (553)
+.|+..|......+.++.|..|++- ||..-.+.+++.++|..++..++. .+.....|++.+.+..+..++.+
T Consensus 125 i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l 198 (485)
T KOG0569|consen 125 IVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL 198 (485)
T ss_pred HHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999976664 33445569988888877777666
Q ss_pred HHHHhccceeec---c-CCCCChHHHHHHhhhhhccchhhhhcc-ccccccCCccchhhhccccCCCCcCCCCCCccccc
Q 008792 227 VSFFAGSRLYRY---Q-KPGGSPLTRICQSLLYETADAEFAVIG-SHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLC 301 (553)
Q Consensus 227 ~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (553)
+...+.. +.|+ . +.+.++..+..+. ++...+.++..+. ..+.+..+. .++ +....++..
T Consensus 199 ~~l~~~P-ESPk~Ll~~k~~~~~A~~sl~~-y~G~~~~~~~~e~~~~e~~~~~~-----------~~~---~~~sl~~~~ 262 (485)
T KOG0569|consen 199 ALLPFLP-ESPKYLLIKKGDEEEARKALKF-YRGKEDVEAEIEEMLREIEEEEL-----------EKK---KQISLRQLL 262 (485)
T ss_pred HHHhcCC-CCcchHHHHcCCHHHHHHHHHH-HhCCCcchhHHHHHHHHHHHhcc-----------ccc---cCCcHHHHh
Confidence 6655432 2211 1 1112222222221 1122111111000 000000000 000 000000000
Q ss_pred cchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeee--cccCcCCCCCcccccccccccchhh---hHHHHHhHhhh
Q 008792 302 TVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQG--NTMDLHIDNSFEIPSASLSLFDTIS---VIFWVPIYDRL 376 (553)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~l~~~i 376 (553)
+.. ..++.+...+.+.+ .+|+........ ...-.+.| +.+......+... .++...+...
T Consensus 263 ~~~--~lR~~~~i~~~v~~--------~qq~sGi~ai~~Yst~i~~~aG----~~~~~a~~an~~~g~v~~~~t~~~~~- 327 (485)
T KOG0569|consen 263 KNP--TLRRPLLIGIVVSF--------AQQFSGINAIFFYSTSIFKTAG----FTPEEAQYANLGIGIVNLLSTLVSPF- 327 (485)
T ss_pred cCc--chhHHHHHHHHHHH--------HHHhcCcceeHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 000 11222211111111 122222111111 11111111 2222212222221 1222222222
Q ss_pred HHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhH-HHHHHHHHHHHH-HHH
Q 008792 377 IVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFW-QVPQYFIIGCAE-VFT 454 (553)
Q Consensus 377 ~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~l~g~~~-~~~ 454 (553)
+.+|..|| +.+..++.++.+..+.+......... .....++ .+.+.+++.+.. ...
T Consensus 328 ---lid~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~y~~i~~~~~~~~~f~~G~ 385 (485)
T KOG0569|consen 328 ---LIDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNS------------FGSWLSYLCIAAIFLFIISFAIGP 385 (485)
T ss_pred ---HHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHHHHHHhhhcCC
Confidence 45554433 56667777766666555544322100 0001112 233444444433 334
Q ss_pred hhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHH
Q 008792 455 FIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLG 534 (553)
Q Consensus 455 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~ 534 (553)
.|..+-+..|++|++.|+.++++...++++.+++-......+.+..+ +++|.++.+.+.+..+
T Consensus 386 gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 386 GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILFVIPLAIFLI 448 (485)
T ss_pred CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHHHHHHHHHHH
Confidence 58889999999999999999999999999999998888877765332 1468899999999999
Q ss_pred HHHHHHhhccccccccc
Q 008792 535 VYLMVARCYTYKKLVVS 551 (553)
Q Consensus 535 ~~~~~~~~~~~~~~~~~ 551 (553)
..+...||+|+|+-+|.
T Consensus 449 ~~~~~lPETkgr~~~eI 465 (485)
T KOG0569|consen 449 YLYRYLPETKGRTPYEI 465 (485)
T ss_pred HHHHhCcccCCCCHHHH
Confidence 99999999998886543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-19 Score=183.54 Aligned_cols=152 Identities=12% Similarity=-0.017 Sum_probs=118.0
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhh-hhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLR-FELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~-~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
+|+++...+. +...+..+.+.+.+...+. .++|+|.+|.+++.+.+.+...++.++.|++.||+ |.|+++.++.++.
T Consensus 33 ~r~l~~s~~~-f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~ 110 (462)
T PRK15034 33 RRNLWISVSC-LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 3565555554 4444444444444445554 48999999999999999999999999999999999 9999999999998
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
.+.+++.+++... ...+++.+++.|++.|++ +...+.....+++++|+++ ||++++++
T Consensus 111 ~i~~~~~~~a~~~---------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~ 168 (462)
T PRK15034 111 IIPCVWLGIAVQN---------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGIN 168 (462)
T ss_pred HHHHHHHHHHHcc---------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHH
Confidence 8888888764110 113588899999999998 6688888999999999998 99999998
Q ss_pred HHHHHHHHHHhhhhhee
Q 008792 188 YFSINIGALVAASCLVW 204 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~ 204 (553)
....|+|..+++.+.+.
T Consensus 169 ~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 169 GGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 77777777766555543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=186.10 Aligned_cols=398 Identities=13% Similarity=0.102 Sum_probs=226.3
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHH
Q 008792 67 QAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVG 146 (553)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (553)
+.+++.+...++..++.++.|+++|++ |||+.++++.+++.++.++++.+ .+..+++++
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a--------------------~~~~~l~~G 148 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA--------------------PSWYQLIVG 148 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHH
Confidence 448999999999999999999999999 99999999999999999999988 458999999
Q ss_pred HHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccc--ccchhhhHHHHHHHHH
Q 008792 147 LYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTN--VGWGWGFGIPAVAMAI 224 (553)
Q Consensus 147 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~--~~~~~~f~i~~~~~~~ 224 (553)
|++.|+|.|+.....+.+++|..|++. |+...+..+....+|..++.. .+....+ .+||..+.+..+..++
T Consensus 149 R~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~ 221 (513)
T KOG0254|consen 149 RILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYC-INYGTSKVYAGWRIPLGLALIPAVI 221 (513)
T ss_pred HHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHH-HhhhhccCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 999999999999999999944 5555444 4899888777766655
Q ss_pred HHHHHHhccceeec---cCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcCCCCCC-cccc
Q 008792 225 AVVSFFAGSRLYRY---QKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVN-AWRL 300 (553)
Q Consensus 225 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 300 (553)
..+. ....|+.++ +..+..+.....+.+ ....+.+ .....+........+....... .++.
T Consensus 222 ~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l-~g~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (513)
T KOG0254|consen 222 LALG-MLFLPESPRWLIEKGRLEEAKRSLKRL-RGLSPED-------------VEVELELLKIKLLVEAEVAEGKASWGE 286 (513)
T ss_pred HHHH-HHhCCCChHHHHHcCChHHHHHHHHHH-hCCCCcc-------------hHHHHHHHHHHHHHhhhcccccccHHH
Confidence 5555 333332221 111111111111111 1100000 0000000000000000000000 1111
Q ss_pred ccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhh
Q 008792 301 CTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPL 380 (553)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l 380 (553)
... ...+|+....+.+.. +..+........+.....+ .. +...+............++...+... +
T Consensus 287 l~~--~~~~~~~~i~~~l~~-----fqq~tG~~~~~~Y~~~if~-~~--g~~~~~~~~~~~~~~v~~~~t~~~~~----l 352 (513)
T KOG0254|consen 287 LFS--PKVRKRLIIGLLLQL-----FQQLTGINYVFYYSTTIFK-SA--GLKSDTFLASIILGVVNFLGTLVATY----L 352 (513)
T ss_pred hcC--cchHHHHHHHHHHHH-----HHHHhCCceEEeehHHHHH-hc--CCCCchHHHHHHHHHHHHHHHHHHHH----H
Confidence 111 112222221121111 1111111111111111111 11 11111111111111112222222223 4
Q ss_pred hhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHH-HHHHHHHHHHHhhhhh
Q 008792 381 ARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQ-YFIIGCAEVFTFIGQL 459 (553)
Q Consensus 381 ~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~g~~~~~~~~~~~ 459 (553)
.+|.. +++.+..|...+.++++.++..........+ ......++.+.. .+..........|..+
T Consensus 353 vd~~g-------Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~v~~f~~g~g~v~w 417 (513)
T KOG0254|consen 353 VDRFG-------RRKLLLFGAAGMSICLVILAVVGVFALYYPN--------SSKGAGWLAIVFLCLFIFSFAIGWGPVPW 417 (513)
T ss_pred HHHhc-------cHHHHHHhHHHHHHHHHHHHHHHHHhccCCC--------cccchhHHHHHHHHHHHHHHhcccccchh
Confidence 55533 3367888888888888887765322110000 000122222222 3333334444457777
Q ss_pred hhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHH-HHHH
Q 008792 460 EFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLG-VYLM 538 (553)
Q Consensus 460 ~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~-~~~~ 538 (553)
.+..|..|.+.|+++.++....+++.+.+-........+..+ ....|.+++.++.+... +.++
T Consensus 418 ~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~----------------~~~~f~~f~~~~~~~~~~fv~~ 481 (513)
T KOG0254|consen 418 VIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG----------------IGGTFGYFGGICLLSLIIFVFF 481 (513)
T ss_pred hhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------ccchHHHHHHHHHHHHHHHheE
Confidence 889999999999999999999988888776555544432111 11246666666666666 7888
Q ss_pred HHhhcccccccccC
Q 008792 539 VARCYTYKKLVVSS 552 (553)
Q Consensus 539 ~~~~~~~~~~~~~~ 552 (553)
+.+|+++++.|+.+
T Consensus 482 ~~pETkg~sleei~ 495 (513)
T KOG0254|consen 482 FVPETKGLTLEEIN 495 (513)
T ss_pred EcccCCCCcHHHHH
Confidence 99999999987653
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-18 Score=182.96 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=141.9
Q ss_pred cCCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc----cchHHH-
Q 008792 25 ETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY----LGRYWT- 99 (553)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Gr~~~- 99 (553)
.+..+|+.+..+...+...+..+...+.+|.|+++ .|.|..+.+...... .. +++.++.|.++||+ .||||.
T Consensus 7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~-~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ 83 (491)
T PRK11010 7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVG-QA-YVFKFLWSPLMDRYTPPFLGRRRGW 83 (491)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH-HH-HHHHHHHHHHHHcccccCCCCchHH
Confidence 34556677788888888888888888889998765 589988888863222 22 37899999999997 167764
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhh
Q 008792 100 IASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKK 179 (553)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (553)
+..+.+..+++...+++.. + ..+++.+.+.+++.+++.+...+...++..|++|+++
T Consensus 84 ll~~~i~~~~~~~~~a~~~--~---------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------ 140 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLE--P---------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------ 140 (491)
T ss_pred HHHHHHHHHHHHHHHHHcC--C---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------
Confidence 6677777777777766541 1 1357788888999999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhheeecc-cccchhhhHHHHHHHHHHHHHHH
Q 008792 180 KSSFFNWFYFSINIGALVAASCLVWIQT-NVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 180 r~~~~~~~~~~~~~G~~~~~~i~g~l~~-~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
|+++.++...+..+|..+++.+++++.+ ..|||..|++.++..++.....+
T Consensus 141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888 57999999988876666544433
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-18 Score=179.47 Aligned_cols=171 Identities=12% Similarity=0.097 Sum_probs=137.1
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGM 111 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 111 (553)
++.+....+...+......+.+ +.+++++|.|..+.+++.+.+.++..+++++.|++.||+ |||+++..+.++.+++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 3444455555555543333444 556899999999999999999999999999999999999 99999999999999998
Q ss_pred HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHH
Q 008792 112 TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSI 191 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 191 (553)
.+...+.. ..+++.+++.|++.|+|.|...+..++++.+..|+++ |++..++.+...
T Consensus 83 ~l~~~~~~-----------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 139 (410)
T TIGR00885 83 FLFWPAAE-----------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFN 139 (410)
T ss_pred HHHHHHHh-----------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHH
Confidence 77654321 1357889999999999999999999999999998877 888899999999
Q ss_pred HHHHHHhhhhheeeccc--------------------------ccchhhhHHHHHHHHHHHH
Q 008792 192 NIGALVAASCLVWIQTN--------------------------VGWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 192 ~~G~~~~~~i~g~l~~~--------------------------~~~~~~f~i~~~~~~~~~~ 227 (553)
++|..+||.+++.+... .+||++|.+.+++.++..+
T Consensus 140 ~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 140 PFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998866321 3699999877765554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=173.65 Aligned_cols=185 Identities=16% Similarity=0.037 Sum_probs=155.4
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
..+|+++.. ...+..+++.+.+.+.+.+++.+++++|+.|.+++.+...+...+..++-|.+.||+ |.|++..++.++
T Consensus 11 ~~~~~L~~S-~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l 88 (417)
T COG2223 11 IARRNLWLS-TLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLL 88 (417)
T ss_pred chhHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHH
Confidence 445655444 445556666677778888889999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
..+..+..+++.+.++ .+.+++.+++.|++.+. +....++++..+|+++ +|.+.|+
T Consensus 89 ~~IP~~~~~~a~~~~~-----------------~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~AlGI 144 (417)
T COG2223 89 LLIPCLGLAFAVTYPS-----------------TWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGLALGI 144 (417)
T ss_pred HHHHHHHHHHHccCCc-----------------hHHHHHHHHHHhcccce-ehcccccccccCChhh------hhHHHHH
Confidence 9999999998854333 58899999999988775 4666788999999998 9999999
Q ss_pred HHHHHHHHHHHhhhhheeeccccc---chhhhHHHHHHHHHHHHHHHhccceeec
Q 008792 187 FYFSINIGALVAASCLVWIQTNVG---WGWGFGIPAVAMAIAVVSFFAGSRLYRY 238 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~---~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 238 (553)
+. ..|+|..+...+++.+....+ |+....+..+..++..+..+...++.++
T Consensus 145 ~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~ 198 (417)
T COG2223 145 AG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE 198 (417)
T ss_pred hc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 99 999999999999999988888 9988888887777777766666655544
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.8e-19 Score=181.67 Aligned_cols=145 Identities=19% Similarity=0.171 Sum_probs=120.4
Q ss_pred HHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008792 50 NTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDK 129 (553)
Q Consensus 50 ~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (553)
.+.+| .+.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++.++.+..+++.+.. ..
T Consensus 20 ~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~------------ 84 (355)
T TIGR00896 20 GPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA------------ 84 (355)
T ss_pred cccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh------------
Confidence 34444 46789999999999999999999999999999999999 99999999988877776655 33
Q ss_pred CCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccc
Q 008792 130 RNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNV 209 (553)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~ 209 (553)
.+.+.+++.|++.|++.+...+..+.+..|.+| ++ |++++++.+.+.++|..+++.+++.+.+..
T Consensus 85 --------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 85 --------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 246778899999999999888888888888886 45 899999999999999999999988887654
Q ss_pred --cchhhhHHHHHHHHH
Q 008792 210 --GWGWGFGIPAVAMAI 224 (553)
Q Consensus 210 --~~~~~f~i~~~~~~~ 224 (553)
+||+.|.+.++..++
T Consensus 150 ~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 150 GGHWQQALAWWALPALL 166 (355)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 389888765554433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-18 Score=176.63 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=114.6
Q ss_pred HHHHhhhhcC--CchhhhhhHHHH-----HHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008792 53 LVNYLRFELN--QGNVQAVNNVTN-----WSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKP 125 (553)
Q Consensus 53 l~~yl~~~l~--~s~~~~~~~~~~-----~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 125 (553)
...++.++.. .++++.+...+. ..+...++.++.|+++||+ |||+++..+.++..++..++++..+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-- 91 (394)
T TIGR00883 15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI-- 91 (394)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh--
Confidence 4444444433 344555544332 2233346889999999999 99999999999999999888877332210
Q ss_pred CCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheee
Q 008792 126 LCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWI 205 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l 205 (553)
.......+++.|+++|++.+...+...+++.|.+|+++ |++..++.+.+..+|..+++.+++.+
T Consensus 92 ----------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 92 ----------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred ----------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112357889999999999999999999999999988 99999999999999999998877654
Q ss_pred c--------ccccchhhhHHHHHHHHHHH
Q 008792 206 Q--------TNVGWGWGFGIPAVAMAIAV 226 (553)
Q Consensus 206 ~--------~~~~~~~~f~i~~~~~~~~~ 226 (553)
. +..+||+.|.+.++..++..
T Consensus 156 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 156 SYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 3 35689999987766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=176.82 Aligned_cols=439 Identities=12% Similarity=0.068 Sum_probs=256.4
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhh----ccchHHHHHHH-HHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADA----YLGRYWTIASF-SII 106 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Gr~~~~~~~-~~~ 106 (553)
+.......+...+++....+++++|+ +.+|.+....+++..+..+...+..|+.|+++|| + ||||.++++ .+.
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~ 83 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence 56777778888888888888888886 6799999999999999999999999999999995 8 999998875 556
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCC--CchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHP--TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFF 184 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (553)
..++..+++.+.+...... ++ -.. .......++++..+..++.....+...++++|++|+++++ ++.++
T Consensus 84 ~~~~l~ll~~~~~~~~~~~--~~---~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~ 154 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFG--DN---LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIAN 154 (477)
T ss_pred HHHHHHHHHhCchhhhhcc--cc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHH
Confidence 6666666665532111000 00 000 0011234445555566677777788899999999988632 46789
Q ss_pred HHHHHHHHHHHHHhhhhheee--ccc-------------ccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHH
Q 008792 185 NWFYFSINIGALVAASCLVWI--QTN-------------VGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRI 249 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~l--~~~-------------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (553)
++.+.+.++|+.+|+.++++. .+. .+.+..|++.+++.++......+..++.+..++++.+..
T Consensus 155 ~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~-- 232 (477)
T TIGR01301 155 AYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS-- 232 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh--
Confidence 999999999999999988764 111 156888999888888777776665554332111100000
Q ss_pred HHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhh
Q 008792 250 CQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVY 329 (553)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (553)
+ ..+.++.+..+.+ .+-++... ..-+.+.+.+.+-+..-+-|..+
T Consensus 233 -----------~-----~~~~~~~~~~~~~---------------~~i~~~~~----~mP~~m~~l~~vqffsW~a~f~~ 277 (477)
T TIGR01301 233 -----------E-----AAPPSKHGEEAFF---------------GELFGAFK----YLPRPVWILLLVTCLNWIAWFPF 277 (477)
T ss_pred -----------h-----cccccccchhhhH---------------HHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000000000 00000000 01112222222322222222322
Q ss_pred ccccceEEeeecccCcC-CCCCcccccc-cccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHH
Q 008792 330 SQMGTLFVLQGNTMDLH-IDNSFEIPSA-SLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFA 407 (553)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 407 (553)
..+.+-++.+..+-... ..+.+ ..+ -..........+...+.+.++.++.||..++ +..-..+.++.+++
T Consensus 278 ~~y~T~~vg~~v~~~~~~~~~~y--~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~------k~~~~~s~~~~~~~ 349 (477)
T TIGR01301 278 ILFDTDWMGREVYGGSVNQGAKY--DDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG------KRLWGIVNIILAIC 349 (477)
T ss_pred HHhccHHHHHHHcCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhHHHHHHHHHHHH
Confidence 22333222211110000 00000 000 0011111111122224444555566664321 23346788888888
Q ss_pred HHHHHHHHHHHHHHhhhc-ccccCC----Ccccc-hhHHHHHHHHHHHHHHHHhhhhhhhhhcccCh--hhHHHHHHHHH
Q 008792 408 MLTAGTLELVRLREVKKH-NYYELK----HIPMS-IFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPD--AMRSLCSALSL 479 (553)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~-~~~~~~----~~~~~-~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~--~~rg~~~g~~~ 479 (553)
++...++... ++| ...+++ .++.. .+..+..+.+.|+........-++++.+..|+ +..|..+|+.|
T Consensus 350 l~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN 424 (477)
T TIGR01301 350 LAATVLVTYV-----AKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLN 424 (477)
T ss_pred HHHHHHHHhh-----hhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHH
Confidence 8877765421 000 000000 01111 36677788999999999999999999999995 45599999999
Q ss_pred HHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008792 480 TTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTY 545 (553)
Q Consensus 480 ~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~ 545 (553)
+...+...+..+..+.+.+..+.+. ...+.+.++.++++++..++..|+.+.
T Consensus 425 ~~I~lpQii~sl~~g~~~~~~g~~~--------------~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 425 LAIVIPQIIVSLGSGPWDQLFGGGN--------------LPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC--------------eeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999888887554433221 235788888899999988888887643
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-17 Score=170.79 Aligned_cols=165 Identities=12% Similarity=0.119 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhcc----chH-HHHHHHHHHHHHHHH
Q 008792 38 NECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYL----GRY-WTIASFSIIYVIGMT 112 (553)
Q Consensus 38 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~----Gr~-~~~~~~~~~~~i~~~ 112 (553)
..+.....+......+|.|+++ .|.|.++.|++...... .+..++.|+++||+. ||| +.+.++.++.+++..
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 3444555555567779999986 59999999998666654 699999999999982 455 578888888877777
Q ss_pred HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 113 ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
.+++... ..+++.+++..++.++..+...+...+++.|.+|+++ |+++.++..++.+
T Consensus 84 ~l~~~~~-----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~ 140 (402)
T PRK11902 84 AMAFCPP-----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYR 140 (402)
T ss_pred HHHhcCc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHH
Confidence 7765511 1346667777777788888888999999999999988 9999999999999
Q ss_pred HHHHHhhhhheeeccc-ccchhhhHHHHHHHHHHHHH
Q 008792 193 IGALVAASCLVWIQTN-VGWGWGFGIPAVAMAIAVVS 228 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~-~~~~~~f~i~~~~~~~~~~~ 228 (553)
+|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 141 ~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 141 LAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999888875 59999999887766555443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-18 Score=173.62 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=119.3
Q ss_pred HHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc----cchHHHH-HHHHHHHHHHHHHHHhhhcccCCCC
Q 008792 51 TNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY----LGRYWTI-ASFSIIYVIGMTILTMSASVHGLKP 125 (553)
Q Consensus 51 ~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Gr~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~ 125 (553)
+.+|.+ .+++|.|.++.++.... .+...+ .++.|+++||+ .||||.+ +.+.+..++.+..+++...
T Consensus 9 ~~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~------ 79 (356)
T TIGR00901 9 NTLPYW-LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP------ 79 (356)
T ss_pred hHHHHH-HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc------
Confidence 345554 45779999999988644 333333 89999999997 3788874 5666777776666655421
Q ss_pred CCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheee
Q 008792 126 LCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWI 205 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l 205 (553)
..+.+.+....++.+++.+...+...+++.|++|+++ |+++.++...+.++|.++++.+++.+
T Consensus 80 -----------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l 142 (356)
T TIGR00901 80 -----------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVL 142 (356)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1346667777777888888888999999999999888 99999999999999999999999988
Q ss_pred ccccc--------chhhhHHHHHHHHHHHHHHHh
Q 008792 206 QTNVG--------WGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 206 ~~~~~--------~~~~f~i~~~~~~~~~~~~~~ 231 (553)
....+ ||..|++.++..++.....++
T Consensus 143 ~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 143 ASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred hhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 88887 999999888776665554443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=186.63 Aligned_cols=354 Identities=40% Similarity=0.668 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCC-chH
Q 008792 97 YWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDY-DEA 175 (553)
Q Consensus 97 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~ 175 (553)
.|+++++.+++.+|.+++.+++..+.. ++..+.+.++++..+.++|.|+..|+..++.+|+++++ +++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~-----------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL-----------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh-----------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 378899999999999998777442221 12345678999999999999999999999999999987 343
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeecc-CCCCChHHHHHHhhh
Q 008792 176 EKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQ-KPGGSPLTRICQSLL 254 (553)
Q Consensus 176 ~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 254 (553)
|.++|++++++.|+|+.+++.+.+++.++.||.+.|.++.+.++++++.++..+++++++ ++.+++..+..+...
T Consensus 70 ----~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~ 145 (372)
T PF00854_consen 70 ----RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVL 145 (372)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHH
T ss_pred ----hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999888877766 455554333111111
Q ss_pred hh------ccc--hhhhhc-ccccc---ccCCccchhhhccccCCCCcCCCCCCcccc-ccchhhhhHHHHHhHHHHHHH
Q 008792 255 YE------TAD--AEFAVI-GSHKL---DHTKQLSFLDKAAVETPSDCVKGSVNAWRL-CTVTQVEEFKSIIRLLPIWAI 321 (553)
Q Consensus 255 ~~------~~~--~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 321 (553)
.. ... .+.... ..... ................+. ...|+. .+.+.++..+.+.+.+..+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 219 (372)
T PF00854_consen 146 VAAFKKRKLAVPKGSSWLDWALFQYSERSIFGIIVFIRAAVIFFPE------IFFWALFCQVQRVEELKALIRFLPIFLF 219 (372)
T ss_dssp HHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC------HHHHTTTSSTTTHHHCCHHHCHHHCCCH
T ss_pred HHHHHHhhcccccchHHHHHhhhhhhhhhhhhhhhhccchhhhhhh------hhhcccCCccceeeeeeeeeeccccCeE
Confidence 00 000 000000 00000 000000000000000000 111111 122334455555556666666
Q ss_pred HHHHHHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHH
Q 008792 322 GIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGL 401 (553)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~ 401 (553)
...++....+...+...+....++..++.+.+|++.++.+|.+.+++..|+.+++..++.++ .. ..+...++.+|+
T Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~---~~~~~~k~~~G~ 295 (372)
T PF00854_consen 220 WIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GI---QPSPPQKFGIGM 295 (372)
T ss_dssp HHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-
T ss_pred EEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-cc---cchhhhhhhHHH
Confidence 66666777777666666666666666623889999999999999999999999998888872 22 267888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHH
Q 008792 402 VISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTT 481 (553)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~ 481 (553)
++..++++.....+..+....++++ ..+.+|.+..+++..++|.+..++..+..+|.+|++..+..+|+++..
T Consensus 296 ~~~~~~~~~~~~v~~~r~~~~~~~~-------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~ 368 (372)
T PF00854_consen 296 VFAILAMFVAAIVEIRRLCYAQPCG-------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFAL 368 (372)
T ss_dssp HHHHHHHHTTTHHHH---HH----T-------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcccccC-------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 9999999888776554444444433 234477788999999999999999999888888877777777777655
Q ss_pred H
Q 008792 482 A 482 (553)
Q Consensus 482 ~ 482 (553)
.
T Consensus 369 ~ 369 (372)
T PF00854_consen 369 S 369 (372)
T ss_dssp H
T ss_pred h
Confidence 4
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=171.00 Aligned_cols=176 Identities=14% Similarity=0.051 Sum_probs=155.6
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcC-------------------------------------------------
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELN------------------------------------------------- 62 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------------------------------------------------- 62 (553)
+.......+.+|+.+..+.+..|.|+.+..+
T Consensus 23 lviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~ 102 (464)
T KOG3764|consen 23 LVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLD 102 (464)
T ss_pred EEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcc
Confidence 4456677777888888888999998866542
Q ss_pred CchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHH
Q 008792 63 QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAV 142 (553)
Q Consensus 63 ~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (553)
.++++.|++.+...+.+.+..|+.|.+.||+ |+|-.+++|++++...+++.++. .++++
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg--------------------~sy~~ 161 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG--------------------NSYPM 161 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc--------------------chhHH
Confidence 3456789999999999999999999999999 99999999999999999999988 34778
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHH
Q 008792 143 FFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAM 222 (553)
Q Consensus 143 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~ 222 (553)
++++|.+||+|.++..++..++++|.+|++++ |++++|..-.+..+|-.+||.+||.+.+..|++.+|.+.+++.
T Consensus 162 l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~ 236 (464)
T KOG3764|consen 162 LFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVL 236 (464)
T ss_pred HHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHH
Confidence 99999999999999999999999999998874 8999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhcc
Q 008792 223 AIAVVSFFAGS 233 (553)
Q Consensus 223 ~~~~~~~~~~~ 233 (553)
++...+-+...
T Consensus 237 Lld~~L~l~vi 247 (464)
T KOG3764|consen 237 LLDGALQLLVI 247 (464)
T ss_pred HHHHHHHHhee
Confidence 87766655544
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=161.63 Aligned_cols=343 Identities=10% Similarity=0.019 Sum_probs=198.1
Q ss_pred CCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHH
Q 008792 62 NQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIA 141 (553)
Q Consensus 62 ~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (553)
+.+..-.|.+-+.+++.+.+.++..|.++||+ |||+++.++.+..++...+++.+ .++.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S--------------------~~F~ 122 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS--------------------RNFA 122 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH--------------------HHHH
Confidence 34556678999999999999999999999999 99999999999999999999888 4576
Q ss_pred HHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecc---cccchhhhHHH
Q 008792 142 VFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQT---NVGWGWGFGIP 218 (553)
Q Consensus 142 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~---~~~~~~~f~i~ 218 (553)
.+.++|++.|+..|.. ..+.++++|.+++++ |+.+++..+.+..+|..+||++||++.+ ..|-.+-++-+
T Consensus 123 afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~ 195 (451)
T KOG2615|consen 123 AFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPC 195 (451)
T ss_pred HHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHH
Confidence 6777799999999976 455799999999988 9999999999999999999999999877 33322222212
Q ss_pred HHHHHHH---HHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcCCCCC
Q 008792 219 AVAMAIA---VVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSV 295 (553)
Q Consensus 219 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (553)
..+..++ +..+.++.|+.-+.+.+.++... ..+..++|. +....++.++....
T Consensus 196 ~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~-----~~~~~~~~~---------~~~~~~~~~~v~~l---------- 251 (451)
T KOG2615|consen 196 LLVFILAAGDVTFFPWFLPETLPLRKRNDEHST-----LQEAADDRL---------ALLKFARIFKVAAL---------- 251 (451)
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhcccccc-----hhhhhhhhh---------hhcchhhhhhhhhh----------
Confidence 2222222 23334444443322221111000 000000000 00000011111000
Q ss_pred Cccccccchhhh-hHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHHHhHh
Q 008792 296 NAWRLCTVTQVE-EFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYD 374 (553)
Q Consensus 296 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 374 (553)
+.+++. +... .++.-+..+. ...++-.+......+ ....++ ..+...+.+..+.++...+.+....
T Consensus 252 rn~p~~--~~i~~~~i~~l~~~l----y~~l~s~~~~t~~~l------~~~rfg-~ss~~~G~vl~~tGl~m~~~ql~~~ 318 (451)
T KOG2615|consen 252 RNPPLL--DFISVLRIFGLHYFL----YLELFSGLENTVLFL------THGRFG-YSSMQQGKVLSTTGLLMLVIQLALV 318 (451)
T ss_pred cCcccc--chHHHHHHHHHHHHH----HHHHHHHHHhhHHHh------hcCccC-CChhhheeeeehhhHHHHHHHHhcc
Confidence 000000 0000 1111111111 111111111111111 011111 1122333344444444444443322
Q ss_pred hhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHH
Q 008792 375 RLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFT 454 (553)
Q Consensus 375 ~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~ 454 (553)
+ ..+|..+ ...-.+..++.++.-.++.++... ....+.....+..+.....
T Consensus 319 ~----~l~~~~~-----~~~a~l~~~l~~~vP~~llls~~~--------------------~~~~l~~~s~l~sf~~A~~ 369 (451)
T KOG2615|consen 319 P----ILPRYKG-----NIKAVLLFSLLLIVPAFLLLSLAR--------------------TPVVLYLGSTLKSFSTASV 369 (451)
T ss_pred c----ccccccc-----chhhHHHHHHHHHHHHHHHHhccc--------------------cchhhhHHHHHHHHHHHHh
Confidence 2 2222110 022234444555444455554431 2234455677888888888
Q ss_pred hhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008792 455 FIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTD 498 (553)
Q Consensus 455 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~ 498 (553)
.|....++....|++.||+.+|+..+...++-++||++.|.+..
T Consensus 370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 89999999999999999999999999999999999999987753
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-17 Score=178.76 Aligned_cols=201 Identities=15% Similarity=0.163 Sum_probs=153.3
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
.++|.+.+.+....+......++.....+-++++++++..+.|++.+.+.++..++.++.|+++||+ ||||.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence 3455444444445555555566667777778889999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHhhhcccC-----------------CCCCCCCC--C---------CcCCCc---hhHHHHHHHHHHHhhccc
Q 008792 107 YVIGMTILTMSASVHG-----------------LKPLCDKR--N---------VCHPTG---LQIAVFFVGLYLIALGTG 155 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~-----------------~~~~~~~~--~---------~~~~~~---~~~~~~~~~~~l~g~~~~ 155 (553)
+++++++.++.+.+.. ....|... + .|..+. ..+..++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 9999999988742110 01134211 0 122211 245678899999999999
Q ss_pred ccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccc----------------------cchh
Q 008792 156 GIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNV----------------------GWGW 213 (553)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~----------------------~~~~ 213 (553)
...+...+++.|.+|+++ |+.++++++.+..+|.++|+++++++.+.+ .|+.
T Consensus 188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl 261 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI 261 (633)
T ss_pred cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence 999999999999999998 999999999999999999999999876532 2666
Q ss_pred hhHHHHHHHHHHHHHHHhccc
Q 008792 214 GFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 214 ~f~i~~~~~~~~~~~~~~~~~ 234 (553)
.|++.+++.++..+.++...+
T Consensus 262 ~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 262 GFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred HHHHHHHHHHHHHHHHHhCcc
Confidence 777777666665554444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=163.30 Aligned_cols=364 Identities=10% Similarity=-0.007 Sum_probs=197.6
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc---cchHHHH-HHHHHHHHH
Q 008792 34 YILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY---LGRYWTI-ASFSIIYVI 109 (553)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~-~~~~~~~~i 109 (553)
.-.+..+..++.+..+.++++.|+++.+|+++.++|.+.+...+...+..|+.|+++||. .||||.. +.+.+...+
T Consensus 12 ~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~ 91 (448)
T PRK09848 12 GYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI 91 (448)
T ss_pred hhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence 333566677778777778888999999999999999999999999999999999999995 2666644 555554544
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
...++.......+ ++.....+++...+.+++.+...+...++..++.+++++ |.+..++..+
T Consensus 92 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~r~~ 153 (448)
T PRK09848 92 FSVLVFWVPTDWS-------------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAARGI 153 (448)
T ss_pred HHHHHHhCcCCCC-------------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHHHHH
Confidence 4444322100000 112233445555667888888888878887877766442 6666555443
Q ss_pred H-----HHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhh
Q 008792 190 S-----INIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAV 264 (553)
Q Consensus 190 ~-----~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (553)
+ .+++..++|.+.+.........+..+. .+..+++.+..++.....+++.+++.+
T Consensus 154 ~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~------------------- 213 (448)
T PRK09848 154 AASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVA------------------- 213 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCcc-------------------
Confidence 3 345666667666543221111111111 122222222222211111111110000
Q ss_pred ccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccC
Q 008792 265 IGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMD 344 (553)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (553)
+.+..+. ++ ...+.|.+.......+..............++.......+
T Consensus 214 ----------~~~~~~~----------------~~-----~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 262 (448)
T PRK09848 214 ----------QPSLKIS----------------LQ-----TLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDT 262 (448)
T ss_pred ----------CCCHHHH----------------HH-----HHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCCh
Confidence 0000000 00 0001111111111111111111122222233332211100
Q ss_pred cCCCCCcccccccccccc-hhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008792 345 LHIDNSFEIPSASLSLFD-TISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVK 423 (553)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~ 423 (553)
. . ...+...+ .+..++..++.++ +.+| +++++.+..|.++.+++.+.+.+..
T Consensus 263 ~-------~-~~~~~~~~~~~~~~~~~~l~~~----l~~r-------~g~~~~~~~g~~~~~i~~~~~~~~~-------- 315 (448)
T PRK09848 263 G-------L-FTVLVLVQNLVGTVASAPLVPG----MVAR-------IGKKNTFLIGALLGTCGYLLFFWVS-------- 315 (448)
T ss_pred H-------H-HHHHHHHHHHHHHHHHHHHHHH----HHHH-------hCcHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 0 0 00011111 1222233344333 4555 3444667778877777766555421
Q ss_pred hcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChh-------hHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008792 424 KHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDA-------MRSLCSALSLTTAALGNYLSTLLVNIV 496 (553)
Q Consensus 424 ~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~-------~rg~~~g~~~~~~~lg~~ig~~l~~~i 496 (553)
..+.++.+...++.++|++...+..+++..+..|++ .+|.+.|++++...+|..+|+.+.+.+
T Consensus 316 ----------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 316 ----------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124455566678889999999999999998888754 469999999999999999999999988
Q ss_pred cccccCC
Q 008792 497 TDFSTRH 503 (553)
Q Consensus 497 ~~~~~~~ 503 (553)
.+..+.+
T Consensus 386 l~~~G~~ 392 (448)
T PRK09848 386 LGLSGYI 392 (448)
T ss_pred HHHcCCC
Confidence 7766543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-21 Score=206.94 Aligned_cols=396 Identities=15% Similarity=0.101 Sum_probs=224.5
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHH
Q 008792 67 QAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVG 146 (553)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (553)
+.++..+...++..++.+++|+++||+ |||+.++++.++..++.++.+++... .+.+.+.++
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-----------------~~~~~~~~~ 108 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-----------------NNFWMLLIG 108 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-----------------ccccccccc
Confidence 467889999999999999999999999 99999999999999999999887310 157789999
Q ss_pred HHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccc---cchhhhHHHHHHHH
Q 008792 147 LYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNV---GWGWGFGIPAVAMA 223 (553)
Q Consensus 147 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~---~~~~~f~i~~~~~~ 223 (553)
|+++|++.|+..+....++.|..|++. |+...++.+....+|..++..++-.+.... .||+.+.+.++..+
T Consensus 109 R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l 182 (451)
T PF00083_consen 109 RFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSL 182 (451)
T ss_pred ccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999998 999999999999999998887765554433 49998887776655
Q ss_pred HHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcCCCCCCccccccc
Q 008792 224 IAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTV 303 (553)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (553)
+.++... ..|+-| +++...++.|++.+...++.+.+.. ..+......+.+...+....|+....
T Consensus 183 ~~~~~~~-~~pESP--------------~wL~~~~~~~~A~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (451)
T PF00083_consen 183 LVLLLRF-FLPESP--------------RWLLSKGRDEEAEKVLRKLRGKEIE-DEEIEEIKAEKKESQESKASWRDLFR 246 (451)
T ss_pred ccccccc-cccccc--------------ceecccccccccccccccccccccc-cccccccccccccccccceeeeeccc
Confidence 4433332 222211 1222222222222222111111000 00000000000000000011221111
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHH-HhhccccceEEeeecccCcCCCCCcccccc-cccccchhhhHHHHHhHhhhHHhhh
Q 008792 304 TQVEEFKSIIRLLPIWAIGIVFS-AVYSQMGTLFVLQGNTMDLHIDNSFEIPSA-SLSLFDTISVIFWVPIYDRLIVPLA 381 (553)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~l~~~i~~~l~ 381 (553)
.+ ..+++++..+.+........ .....+.+.... . .+.... .......+...+...+... +.
T Consensus 247 ~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 310 (451)
T PF00083_consen 247 NK-KYRKRLLIALLLQFFQQFSGINFIFYYSPSIFE-------N----AGISNSFLATLILGLVNFLGTLLAIF----LI 310 (451)
T ss_pred cc-ccccccccccccccccccccccccccccccccc-------c----cccccccccccccccccccccccccc----cc
Confidence 11 11223222222211111110 000111111111 1 111111 1111111111111111112 45
Q ss_pred hhhcCCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccccCCCcccchhHHHHHHHHH-HHHHHHHhhhhh
Q 008792 382 RKFTGHKNGFTQLQRIAIGLVISIFAMLTAG-TLELVRLREVKKHNYYELKHIPMSIFWQVPQYFII-GCAEVFTFIGQL 459 (553)
Q Consensus 382 ~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~-g~~~~~~~~~~~ 459 (553)
+|..+| +.+..+..+.+++.+.++ ..... ++ ......++.+....+. ........+..+
T Consensus 311 ~~~GRr-------~~~i~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~ 371 (451)
T PF00083_consen 311 DRFGRR-------KLLIIGLLLMAICSLILGIIFFLG------VS------SSSWWSILSIVFLALFFAFFSLGWGPLPW 371 (451)
T ss_pred cccccc-------cccccccccccccccccccccccc------cc------cccccccccceeeeecccccccccccccc
Confidence 554333 446666666666665554 11000 00 0000111222222222 222324456777
Q ss_pred hhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 008792 460 EFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMV 539 (553)
Q Consensus 460 ~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~ 539 (553)
.+..|.+|.+.|+++.|+......+++.+++.+.+.+.+..+ ....|+++++++++..++.+++
T Consensus 372 ~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~----------------~~~~~~i~~~~~~i~~i~~~~~ 435 (451)
T PF00083_consen 372 IYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG----------------GWGVFLIFAGVCLIAIIFVYFF 435 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccc----------------ccccchhhHHHHHHHHhheeEE
Confidence 889999999999999999999999999888888776654321 1234788888888888888999
Q ss_pred HhhcccccccccCC
Q 008792 540 ARCYTYKKLVVSSH 553 (553)
Q Consensus 540 ~~~~~~~~~~~~~~ 553 (553)
.||+++++.+|.++
T Consensus 436 lpET~g~~l~ei~~ 449 (451)
T PF00083_consen 436 LPETKGKTLEEIQE 449 (451)
T ss_pred EeeCCCCCHHHHHh
Confidence 99999999988764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-16 Score=161.22 Aligned_cols=176 Identities=10% Similarity=-0.107 Sum_probs=119.7
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhH--HHHHHHHHhhhhhhH-HHHhhhccchHHHHHHHHHH-HH
Q 008792 33 PYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNN--VTNWSGTCYVMPLIG-AFLADAYLGRYWTIASFSII-YV 108 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Gr~~~~~~~~~~-~~ 108 (553)
..+....+...+-+....+.+|.|+++ .|.|..+.|.. ...+.....+..|+. ++.+||+ ||||..++...+ .+
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHH
Confidence 445556666777777778889999865 59999999987 466677787777777 5579998 999887655432 22
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
.....++... +. ......++....+.++..+...+...++..|..++++ ++.+.+...
T Consensus 82 ~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~ 139 (390)
T TIGR02718 82 ACLASLALVG--PD--------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQI 139 (390)
T ss_pred HHHHHHHcCC--cc--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHH
Confidence 2222232110 11 0112233344444556666666666777677666655 677777788
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhc
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
.+..+|..+|+...+++.+..|||..|++.+++.++..+..++.
T Consensus 140 ~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 140 AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 88889999999888899999999999998887776665554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-16 Score=169.06 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=125.8
Q ss_pred hhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCch
Q 008792 59 FELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGL 138 (553)
Q Consensus 59 ~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (553)
+....+.....+..+++.++..+|+++.|.++||+ |||++++.+.++..++.++.+++ .
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a--------------------~ 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA--------------------P 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh--------------------C
Confidence 55667788888999999999999999999999997 99999999999999999999988 4
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHH
Q 008792 139 QIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIP 218 (553)
Q Consensus 139 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~ 218 (553)
+++.+++.|++.|++.++...+...+++|+++++. |+.+..+ ......++.++|.+++++.. +||+.+++.
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~ 240 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWII 240 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 58889999999999999999999999999999998 9999999 88888888889998888876 899999987
Q ss_pred HHHHHHHHHH
Q 008792 219 AVAMAIAVVS 228 (553)
Q Consensus 219 ~~~~~~~~~~ 228 (553)
.+..++.++.
T Consensus 241 ~~~~~~~~~~ 250 (521)
T KOG0255|consen 241 SIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHH
Confidence 7766666555
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=161.19 Aligned_cols=358 Identities=11% Similarity=0.057 Sum_probs=202.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhh----ccchHH-HHHHHHHHHHHHH
Q 008792 37 GNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADA----YLGRYW-TIASFSIIYVIGM 111 (553)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Gr~~-~~~~~~~~~~i~~ 111 (553)
+..+..+..+..+..+++.|+++.+|+|+.++|.+..+..+.-.+..|+.|+++|| + |||| .++.+.+..+++.
T Consensus 16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~ 94 (444)
T PRK09669 16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVC 94 (444)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHH
Confidence 44466777777778889999999999999999999999999999999999999999 5 7755 4556666666666
Q ss_pred HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHH
Q 008792 112 TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSI 191 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 191 (553)
.++... |.. +.......+++...+.+.+..+......++.+|+.+++++ |.+..++.....
T Consensus 95 ~l~f~~---p~~-----------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~l~~~r~~~~ 155 (444)
T PRK09669 95 LLTFYT---PDF-----------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHSLQSWRFALS 155 (444)
T ss_pred HHHHhC---CCC-----------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHHHHHHHHHHH
Confidence 554433 210 0112345555556666767767777778999998865432 888888887788
Q ss_pred HHHHHHhhhhheeecc-------cccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhh
Q 008792 192 NIGALVAASCLVWIQT-------NVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAV 264 (553)
Q Consensus 192 ~~G~~~~~~i~g~l~~-------~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (553)
++|..+++.+...+.. ..+|+..+.+.+++.++.....+...++.. +++++++
T Consensus 156 ~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~-~~~~~~~------------------- 215 (444)
T PRK09669 156 FIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERY-TPEVDNS------------------- 215 (444)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEec-CCCCcCC-------------------
Confidence 8887777654433222 246776666555554444433333322211 1100000
Q ss_pred ccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccC
Q 008792 265 IGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMD 344 (553)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (553)
.+..+.. +...+.|.+...+...+..............++..... .
T Consensus 216 -----------~~~~~~~---------------------~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~--~ 261 (444)
T PRK09669 216 -----------SSVWKDL---------------------KLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVL--L 261 (444)
T ss_pred -----------CCHHHHH---------------------HHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeec--C
Confidence 0000000 00000111111111111111111112222222222111 1
Q ss_pred cCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008792 345 LHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKK 424 (553)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~ 424 (553)
.. . . .........+..++..++..+ +.+|.. +++....+.++.+++.+......
T Consensus 262 ~~---~--~-~~~~~~~~~i~~ii~~~~~~~----l~~r~g-------k~~~~~~~~~~~~~~~~~~~~~~--------- 315 (444)
T PRK09669 262 RP---D--L-ATLFLVTGMIAGLFGALLSER----LLGKFD-------RVRAFKWTIVAFVILSALIFFIP--------- 315 (444)
T ss_pred CH---H--H-HHHHHHHHHHHHHHHHHHHHH----HHHHhC-------hHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 00 0 0 001111111222233334333 566632 33445555554443333222210
Q ss_pred cccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccC-------hhhHHHHHHHHHHHHHHHHHHhhHhhhhcc
Q 008792 425 HNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAP-------DAMRSLCSALSLTTAALGNYLSTLLVNIVT 497 (553)
Q Consensus 425 ~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~ 497 (553)
..+.+.+++..++.+++.+...+..++++.|..+ ++..|...|++++...+|..+|+.+.+.+.
T Consensus 316 ---------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 316 ---------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred ---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1244455666788999999999999999988876 334567889999999999999999999988
Q ss_pred ccccCC
Q 008792 498 DFSTRH 503 (553)
Q Consensus 498 ~~~~~~ 503 (553)
+..+..
T Consensus 387 ~~~Gy~ 392 (444)
T PRK09669 387 AWVDYV 392 (444)
T ss_pred HHcCCC
Confidence 877653
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-15 Score=156.55 Aligned_cols=380 Identities=16% Similarity=0.118 Sum_probs=213.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHh
Q 008792 37 GNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTM 116 (553)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~ 116 (553)
...++....+-...++++.|+++ .|+|..|.|.+.+...+...+.+++.|+++||...+||.+.+..++.++.......
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455567889999865 68999999999999999999999999999999845677777777666665555544
Q ss_pred hhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHH
Q 008792 117 SASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGAL 196 (553)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 196 (553)
. .+++.+++..++..+......|...++..+...+ +++-+|-....+.+|.+
T Consensus 88 ~--------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlwGSiGf~ 139 (400)
T PF03825_consen 88 S--------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLWGSIGFI 139 (400)
T ss_pred h--------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhhhhHHHH
Confidence 4 2356666667777777777777777777776653 33446666666677776
Q ss_pred Hhhhh-heeeccccc---chhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcccccccc
Q 008792 197 VAASC-LVWIQTNVG---WGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDH 272 (553)
Q Consensus 197 ~~~~i-~g~l~~~~~---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (553)
++... ++.+....+ ..+.+++.+...++..... ...|+.+.++..+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~~--------------------------- 191 (400)
T PF03825_consen 140 VAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKES--------------------------- 191 (400)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCCC---------------------------
Confidence 66433 222222222 2334555554333332222 222322211000000
Q ss_pred CCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCcc
Q 008792 273 TKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFE 352 (553)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
.++....+. ++ -.++.+.+...+..++........+...+.++.... ++.
T Consensus 192 ~~~~~~~~~----------------~~-----llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g---------g~~ 241 (400)
T PF03825_consen 192 VKKLLGLDA----------------LK-----LLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELG---------GYS 241 (400)
T ss_pred cccccchHH----------------HH-----HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------cch
Confidence 000000000 00 001111111112222222222222222222211110 000
Q ss_pred c-ccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 008792 353 I-PSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELK 431 (553)
Q Consensus 353 ~-~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 431 (553)
. ..+....+..+.-++..... .++.+| ++..+.+.++.+..++-........
T Consensus 242 ~~~~g~~~~l~~~aEi~~f~~~----~~~~~r-------~g~~~ll~~a~~~~~vR~~l~a~~~---------------- 294 (400)
T PF03825_consen 242 GSTIGILWALGVVAEIPFFFFS----GRFLKR-------FGIKWLLLLALVAYAVRWLLYAYFS---------------- 294 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----HHHHHh-------cCHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 0 00111111112222222222 224444 6677888889988888888777641
Q ss_pred CcccchhHH----HHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHH-HHHHHHHhhHhhhhccccccCCCCC
Q 008792 432 HIPMSIFWQ----VPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTT-AALGNYLSTLLVNIVTDFSTRHGKP 506 (553)
Q Consensus 432 ~~~~~~~~~----i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~lg~~ig~~l~~~i~~~~~~~~~~ 506 (553)
.+.++. ++...+.|+..+........++.+.+|++.|+++++++... .++|+.+|..+.|++.|..+.++.-
T Consensus 295 ---~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 295 ---DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred ---CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 122221 22235689999999999999999999999999999999864 6999999999999988765433211
Q ss_pred CCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008792 507 GWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCY 543 (553)
Q Consensus 507 ~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~ 543 (553)
....++.+.+++.++..++++++-|++
T Consensus 372 ----------~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 372 ----------DWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 123445666666666666666665544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-16 Score=159.09 Aligned_cols=154 Identities=11% Similarity=0.006 Sum_probs=134.6
Q ss_pred hHHHHHHHhhhhcCCchhh-hhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008792 49 INTNLVNYLRFELNQGNVQ-AVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLC 127 (553)
Q Consensus 49 ~~~~l~~yl~~~l~~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (553)
..++..+|+.+++|+|.++ .|.+.+.+..++.++.+++|+++||+ |.|+++.++.+...+..++++++
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa---------- 112 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG---------- 112 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH----------
Confidence 4566778999999999999 99999999999999999999999999 99999999999999999999987
Q ss_pred CCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecc
Q 008792 128 DKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQT 207 (553)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~ 207 (553)
.++..+.+.|++.|++.|... +...++..++|+++ |+++.++.+.+.++|.++++.++++ ..
T Consensus 113 ----------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~ql-l~ 174 (511)
T TIGR00806 113 ----------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQL-LV 174 (511)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 348889999999999999999 99999999999988 9999999999999999999999999 55
Q ss_pred cccchhhhH---HHHHHHHHHHHHHHh
Q 008792 208 NVGWGWGFG---IPAVAMAIAVVSFFA 231 (553)
Q Consensus 208 ~~~~~~~f~---i~~~~~~~~~~~~~~ 231 (553)
.+||++-+. ++.....++++..++
T Consensus 175 s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 175 TLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 678987554 444444444444433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.8e-16 Score=153.47 Aligned_cols=150 Identities=16% Similarity=0.128 Sum_probs=126.1
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008792 34 YILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTI 113 (553)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~ 113 (553)
+.+-..|+........+..+.+.+++.++.+..+++++...+..++.+++++.|++.+|+ |+|+.+++++.++++++.+
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~l 94 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAAL 94 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence 333333344444444566677888999999999999999999999999999999999999 9999999999999999988
Q ss_pred HHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHH
Q 008792 114 LTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINI 193 (553)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 193 (553)
..=++. ..++..++++.++.+.|.+...+..+++++.+.+++. ...-+++.+....+
T Consensus 95 F~pAa~-----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~l 151 (422)
T COG0738 95 FWPAAS-----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGL 151 (422)
T ss_pred Hhhhhh-----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhh
Confidence 753321 1357889999999999999999999999999999876 55568888899999
Q ss_pred HHHHhhhhheeecc
Q 008792 194 GALVAASCLVWIQT 207 (553)
Q Consensus 194 G~~~~~~i~g~l~~ 207 (553)
|+.++|.+++++..
T Consensus 152 Ga~~gp~~g~~lil 165 (422)
T COG0738 152 GAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998766
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=149.17 Aligned_cols=420 Identities=13% Similarity=0.039 Sum_probs=232.9
Q ss_pred HHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008792 46 YYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKP 125 (553)
Q Consensus 46 ~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 125 (553)
....+..+.+-+...-|.+..+..++......+..+++...|.++|++ |||+.+.+..+..++.-.+-+.+
T Consensus 93 ~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s-------- 163 (528)
T KOG0253|consen 93 EMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS-------- 163 (528)
T ss_pred HHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC--------
Confidence 334455555666777789999999999999999999999999999999 99999988877666665555544
Q ss_pred CCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheee
Q 008792 126 LCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWI 205 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l 205 (553)
.++..+.+.|.+.|+|.|+ .|...++-.|..|..+ |....-+. ....+|.++...+.-..
T Consensus 164 ------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~v 223 (528)
T KOG0253|consen 164 ------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGV 223 (528)
T ss_pred ------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHH
Confidence 4588899999999999999 8999999999999887 88777666 77788988887777666
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccC----Cccchhhh
Q 008792 206 QTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHT----KQLSFLDK 281 (553)
Q Consensus 206 ~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 281 (553)
...+||||..........+...+.++.....+..-.++++............-|+.....++...... +...-+|+
T Consensus 224 m~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~ 303 (528)
T KOG0253|consen 224 MSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDD 303 (528)
T ss_pred HHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhh
Confidence 77889999877666555555555555443333333334443332222222221221111111111110 01111222
Q ss_pred ccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHH-------hhcccc----ceEEeeecccCcCCCCC
Q 008792 282 AAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSA-------VYSQMG----TLFVLQGNTMDLHIDNS 350 (553)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~~~ 350 (553)
.+....++. ....+..... .-+|+.+.....++.....+. -..|.. .+.-..+.+++......
T Consensus 304 ~~~~a~ke~----rg~~~nLlsp--~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~ 377 (528)
T KOG0253|consen 304 SKSSAAKEV----RGGTTNLLSP--KLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCP 377 (528)
T ss_pred hhhcccccc----ccchHhhcCh--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCC
Confidence 222221111 1111111000 112222222222222222111 111111 11111122222211000
Q ss_pred cccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008792 351 FEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYEL 430 (553)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 430 (553)
...... .-+.+...+.......+...+.+|+.+| +.+...+++.++..+.+....
T Consensus 378 ~s~~~d---YrdllitslaefPGlLIt~~iverlGRK-------kTMal~l~~f~iflfll~~c~--------------- 432 (528)
T KOG0253|consen 378 LSVAKD---YRDLLITSLAEFPGLLITGVIVERLGRK-------KTMALSLILFGIFLFLLTTCK--------------- 432 (528)
T ss_pred ccchhH---HHHHHHHHHhhCCchhHHHHHHHHhcch-------hHHHHHHHHHHHHHHHHHHhc---------------
Confidence 000001 1112222222111111112234443333 445555555555544443321
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCcc
Q 008792 431 KHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIP 510 (553)
Q Consensus 431 ~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~ 510 (553)
+ .+ ..-...+..-++....+.+.+.|..|+.|...|+++.|....+..+|+.+.|.+. ....... .
T Consensus 433 -~--rn--~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~------s-- 498 (528)
T KOG0253|consen 433 -T--RN--AYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELST------S-- 498 (528)
T ss_pred -C--cc--hhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccce------e--
Confidence 1 11 1112223344555566778899999999999999999999999999999999888 3322111 0
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008792 511 DNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKL 548 (553)
Q Consensus 511 ~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~ 548 (553)
-.-.+++.+++++++...++-.++++|..
T Consensus 499 ---------l~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 499 ---------LPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred ---------ehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 12467778888888888888888887754
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-17 Score=163.88 Aligned_cols=437 Identities=14% Similarity=0.045 Sum_probs=233.0
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhh---hc----CCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRF---EL----NQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIAS 102 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~---~l----~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~ 102 (553)
|.+.+.-+..+.+....+.+....+.+-.. .. +.++...+.+..+..++..+++++.||++||+ |||+++-.
T Consensus 41 k~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~ 119 (538)
T KOG0252|consen 41 KAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGK 119 (538)
T ss_pred HHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhH
Confidence 333333344455555555555444432211 11 25566778888889999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhh
Q 008792 103 FSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182 (553)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 182 (553)
.++++.++++++++....+. ...-.+++...|++.|+|.|+-+|...++.+|..-.+. ||.
T Consensus 120 ~liImIi~t~~~~~s~~~~~-------------~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa 180 (538)
T KOG0252|consen 120 ELIIMIICSALSGLSVGTTS-------------PLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGA 180 (538)
T ss_pred HHHHHHHHHHHhccCCCCCC-------------CcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccc
Confidence 99999999997776633222 11346788999999999999999999999999888777 777
Q ss_pred hHHH----HHHHHHHHHHHhhhhheeecccc-----------cchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHH
Q 008792 183 FFNW----FYFSINIGALVAASCLVWIQTNV-----------GWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLT 247 (553)
Q Consensus 183 ~~~~----~~~~~~~G~~~~~~i~g~l~~~~-----------~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (553)
..+. ..++.-.|+.++.++.+.+-..+ =||..|.+.++..+.. +.++.+ -|+...+.
T Consensus 181 ~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~---ly~Rl~-----M~Et~~Y~ 252 (538)
T KOG0252|consen 181 FIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV---LYFRLK-----MPETARYT 252 (538)
T ss_pred eeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH---HHhhhc-----CCcchhHH
Confidence 6554 55556666666655554432211 2887776655433322 222211 11111221
Q ss_pred HHHHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHH
Q 008792 248 RICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSA 327 (553)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (553)
.. ..++.+.+... +....+.+..+.......... ..+..+.+. ..+.+. --..++.....|.
T Consensus 253 al------~~~~~~~a~~d---~~k~~~~~~~~~~~~~~~~~~---~~~~~~~F~----~~f~~~--hg~~Llgt~~~WF 314 (538)
T KOG0252|consen 253 AL------VSKKLKQAAGD---MKKVLSVDIEAESTAESDVPP---PSNSFGLFS----RLFLRW--HGKHLLGTAGTWF 314 (538)
T ss_pred HH------hhcCHhhhhhc---cccccccccchhhccccCCCC---cccccchHH----HHHHHH--HHHHHHHHHHHHH
Confidence 10 00111111100 000000000000000000000 011111111 001010 1112222333333
Q ss_pred hh-ccccceEEeeecccCcCCCCCcccccccc--------cccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHH
Q 008792 328 VY-SQMGTLFVLQGNTMDLHIDNSFEIPSASL--------SLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIA 398 (553)
Q Consensus 328 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~ 398 (553)
.+ ..++++-..|..-++ ..+..++.- ...+.+.........-++..-+.++ +++.+..+
T Consensus 315 llDiafy~~nL~~s~I~~-----~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-------iGRk~iq~ 382 (538)
T KOG0252|consen 315 LLDIAFYGQNLFQSVIFS-----AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-------IGRKYIQL 382 (538)
T ss_pred hhhhhhhccccHHHHHHH-----hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-------hhhHHHHH
Confidence 22 222222222222111 011111110 0111111111111111111112333 44557788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHH-HHHHHHHHhhhhhhhhhcccChhhHHHHHHH
Q 008792 399 IGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFI-IGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL 477 (553)
Q Consensus 399 ~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l-~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~ 477 (553)
.|+.++.+-++.++..-.. ..+-...++.+.+ ..+++..-..+...+..|.+|.+.||++-|+
T Consensus 383 ~GF~~~~i~~~~~~~~y~~----------------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGI 446 (538)
T KOG0252|consen 383 MGFFIMTIFFFVIAGPYNQ----------------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGI 446 (538)
T ss_pred hhHHHHHHHHHHHcCCccc----------------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhH
Confidence 8999988888877754210 0122222322222 2233333345566678999999999999999
Q ss_pred HHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 008792 478 SLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKLVVSS 552 (553)
Q Consensus 478 ~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 552 (553)
+-....+|+.+|......+.+.. . ....+....++++++++.+..++.+++- |+++|.+++.+
T Consensus 447 sAA~GK~GAivg~~~F~~~t~~~--------y---p~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei~ 509 (538)
T KOG0252|consen 447 SAASGKAGAIVGAFGFLYLTDHN--------Y---PPNIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEIS 509 (538)
T ss_pred HHHhccchHHHHHHHhhHhhhcc--------C---CccccchHHHHHHHHHHHHhHheeEEee-cccccCHHHhc
Confidence 99999999999999887765521 1 1123455678999999988877666555 99988887654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=156.44 Aligned_cols=366 Identities=9% Similarity=0.007 Sum_probs=208.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhh----hccch-HHHHHHHHHHHHHH
Q 008792 36 LGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLAD----AYLGR-YWTIASFSIIYVIG 110 (553)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr-~~~~~~~~~~~~i~ 110 (553)
-+..+..++.+..+.++++.|+++.+|+++.++|.+..+..+.-.+..|+.|+++| |+ || |+.++.+.+..+++
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~ 90 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVV 90 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHH
Confidence 35566778888888899999999999999999999999999999999999999999 77 77 55556677777777
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
..++... |.. +++.....+++..++.+++.....+...++.+|+.+++++ |.+..++....
T Consensus 91 ~~llf~~---p~~-----------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e-----R~~l~~~~~~~ 151 (473)
T PRK10429 91 LFLLFSA---HLF-----------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE-----REQLVPYPRFF 151 (473)
T ss_pred HHHHHcC---CCC-----------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH-----HHHHHHHHHHH
Confidence 6555432 210 0112244455556667888888888888999999964432 88888887777
Q ss_pred HHHHHHHhhhhheeecc-------cccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhh
Q 008792 191 INIGALVAASCLVWIQT-------NVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFA 263 (553)
Q Consensus 191 ~~~G~~~~~~i~g~l~~-------~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (553)
.++|+.+.+.+...+.. ..+|+....+.+++.++.....++..|+.++ ++...+
T Consensus 152 ~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~~------------------ 212 (473)
T PRK10429 152 ASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS-SDNQVS------------------ 212 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC-cccccc------------------
Confidence 77776665544332211 1245555555544444443333332222110 000000
Q ss_pred hccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeeccc
Q 008792 264 VIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTM 343 (553)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (553)
+ +.+..+..+. ++ ...++ |.++..+...+...........+..++......
T Consensus 213 -----~--~~~~~~~~~~----------------~~----~~~~n-~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~- 263 (473)
T PRK10429 213 -----A--EGSHLTLKDI----------------VA----LIYKN-DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG- 263 (473)
T ss_pred -----c--cccCCCHHHH----------------HH----HHhcC-HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-
Confidence 0 0000000000 00 00011 222222222222222222222233333322111
Q ss_pred CcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008792 344 DLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVK 423 (553)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~ 423 (553)
+.. ....+.....+..++..++.++ +.+|+ ++++.+..+..+.+++.+........
T Consensus 264 ~~~-------~~~~~~~~~~i~~ii~~~~~~~----l~~r~-------gkk~~~~~~~~~~~~~~~~~~~~~~~------ 319 (473)
T PRK10429 264 DAD-------LFPYYLSYAGAANLVTLILFPR----LVKSL-------SRRILWAGASIFPVLSCGVLLLMGLA------ 319 (473)
T ss_pred CHH-------HHHHHHHHHHHHHHHHHHHHHH----HHHHc-------CcHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 000 0111222223334444555444 55663 33355556666555554443321000
Q ss_pred hcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccC-------hhhHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008792 424 KHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAP-------DAMRSLCSALSLTTAALGNYLSTLLVNIV 496 (553)
Q Consensus 424 ~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~~ig~~l~~~i 496 (553)
...+.+.+++..++.+++.+...+...+++.|..+ .+..|...|.+.+...++..+++.+.+.+
T Consensus 320 ---------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 320 ---------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred ---------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234455566677888988888888888888866 44466689999999999999999999988
Q ss_pred cccccC
Q 008792 497 TDFSTR 502 (553)
Q Consensus 497 ~~~~~~ 502 (553)
.+..+.
T Consensus 391 l~~~Gy 396 (473)
T PRK10429 391 LGLIGY 396 (473)
T ss_pred HHHcCC
Confidence 876654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-15 Score=158.65 Aligned_cols=419 Identities=13% Similarity=0.059 Sum_probs=250.6
Q ss_pred hhhhhHHHHHHHHHHHhHH---HHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAYYGINT---NLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.+++..|..++..+++.. .+...+++.++.+..+.+|+.++......+..|+.+.+.||+ |.|.+.++|.++.++
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 6666666666666666433 345667888999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHH-HHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFV-GLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
+.++.+++. +++++++ .-++.|+|.++.......++...|+++ |+.+.|+..
T Consensus 124 g~~lssF~~--------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~ 176 (509)
T KOG2504|consen 124 GLLLSSFAT--------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAV 176 (509)
T ss_pred HHHHHHHHh--------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhh
Confidence 999999883 4665555 455679999999998888888777753 899999999
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcccc
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSH 268 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (553)
.+..+|..+=|.+.-++.+..|||+.+++-+.+.+-....-...+|...+.++. ...+ ......+.+......+
T Consensus 177 ~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~ 250 (509)
T KOG2504|consen 177 SGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKD----LRNSAASVESTPKPVE 250 (509)
T ss_pred ccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhh----hccccccccccccccc
Confidence 999999999999999999999999999877766655554444544433333222 0000 0000000000000000
Q ss_pred ccccCCccchhhhccccCCCCcCCCCCCccc-----ccc----chhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEee
Q 008792 269 KLDHTKQLSFLDKAAVETPSDCVKGSVNAWR-----LCT----VTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQ 339 (553)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (553)
.....+.....+ ........++ .....++ ... .+..+++.-+...+...+....+.......+.+..
T Consensus 251 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-- 326 (509)
T KOG2504|consen 251 LRISERDSGLKK-LSLSNLATLK-RGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-- 326 (509)
T ss_pred cccccCCCCCCc-ccccchhhhh-hCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 000000000000 0000000000 0001111 000 01111111111111111111111111111111111
Q ss_pred ecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008792 340 GNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRL 419 (553)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~ 419 (553)
....+.+ .........++..++..++.+. +.++.. .+......+++++.+++.+.+...
T Consensus 327 ~~g~~~~-------~aa~l~Siigi~~i~gRi~~G~----laD~~~-----~~~~~~~~~~ll~~gl~~~~~p~~----- 385 (509)
T KOG2504|consen 327 SLGLSSN-------DAAFLLSIIGVSDIIGRIILGL----LADKPG-----IRALVLFLLTLLIAGLARLFLPFA----- 385 (509)
T ss_pred hcCCChh-------hhHHHHHHHHHhhhhhhhhhhh----hcCccc-----cchHHHHHHHHHHHHHHHHHHHHh-----
Confidence 0011111 0011111222223333333333 233321 234455677777777777666654
Q ss_pred HHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhcccc
Q 008792 420 REVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDF 499 (553)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~ 499 (553)
.+++.++...+++|++.+.........+.+..+.+.-+.+.|+..+..+++..+|+-+.+.+.|.
T Consensus 386 ---------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~ 450 (509)
T KOG2504|consen 386 ---------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDI 450 (509)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeec
Confidence 36677788889999999998888888999999999999999999999999999999999977665
Q ss_pred ccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 008792 500 STRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVA 540 (553)
Q Consensus 500 ~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~ 540 (553)
++ +|...|+..+++.+++....++..
T Consensus 451 tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 451 TG---------------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cC---------------CeeeehhhcChHHHHHHHHHHHhH
Confidence 43 234457777777777766555544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=159.48 Aligned_cols=359 Identities=13% Similarity=0.108 Sum_probs=224.4
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhh----hccchHHHHH-HHHHHHHHHHHH
Q 008792 39 ECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLAD----AYLGRYWTIA-SFSIIYVIGMTI 113 (553)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr~~~~~-~~~~~~~i~~~~ 113 (553)
.+..++.......+++.|+++.+|+++...+.+.....+..++..|+.|+++| |+ ||||..+ ++.+..+++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence 46666666667778899999999999999999999999999999999999999 78 7666554 677788887777
Q ss_pred HHhhhcccCCCCCCCCCCCcCC-CchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 114 LTMSASVHGLKPLCDKRNVCHP-TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
+.... |. +- .......+++..++..++.........++.+|+.+++++ |.+..++......
T Consensus 89 lf~~~--p~-----------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~ 150 (428)
T PF13347_consen 89 LFSPP--PA-----------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSM 150 (428)
T ss_pred hhccc--cc-----------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHH
Confidence 76430 10 00 011234456666677899999999999999999986542 8899999888888
Q ss_pred HHHHHhhhhheeecccc-------cchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhc
Q 008792 193 IGALVAASCLVWIQTNV-------GWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVI 265 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~-------~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (553)
+|..+...+.+.+.+.. +|++...+.+++.++.....+...|+.+++.++.+
T Consensus 151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~--------------------- 209 (428)
T PF13347_consen 151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQE--------------------- 209 (428)
T ss_pred HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccc---------------------
Confidence 88876666666554322 57777776666665555554444443111100000
Q ss_pred cccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCc
Q 008792 266 GSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345 (553)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (553)
+..+..+ .++.. .++ |.....+...+.....+........++.......+
T Consensus 210 --------~~~~~~~----------------~~~~~----~~n-r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~- 259 (428)
T PF13347_consen 210 --------KKISLRD----------------SLRSL----FRN-RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE- 259 (428)
T ss_pred --------ccccccc----------------chhhh----ccc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-
Confidence 0000000 00000 001 11111111111111111111111111111111001
Q ss_pred CCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008792 346 HIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKH 425 (553)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~ 425 (553)
-..+.......+..++..++..+ +.||.. +++.+..+.++.+++.+...+...
T Consensus 260 -------~~~~~~~~~~~~~~~v~~~~~~~----l~~r~g-------k~~~~~~~~~~~~~~~~~~~~~~~--------- 312 (428)
T PF13347_consen 260 -------GLISIFMLIFFVASIVGSPLWGR----LSKRFG-------KKKVYIIGLLLAALGFLLLFFLGP--------- 312 (428)
T ss_pred -------hhhHHHHHHHHHHHHHHHHHHHH----HHHHcc-------ceeehhhhHHHHHHHHHHHHHHHh---------
Confidence 00112222334444555555544 566643 335677888888888877766521
Q ss_pred ccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccCh-------hhHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008792 426 NYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPD-------AMRSLCSALSLTTAALGNYLSTLLVNIVTD 498 (553)
Q Consensus 426 ~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~-------~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~ 498 (553)
.+.+++++..++.+++.+..++..+++..|..+. +..|...|++++...++..+++.+.+.+.+
T Consensus 313 ---------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 313 ---------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred ---------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3667888889999999999999989999988873 446999999999999999999999998887
Q ss_pred cccCC
Q 008792 499 FSTRH 503 (553)
Q Consensus 499 ~~~~~ 503 (553)
..+..
T Consensus 384 ~~Gy~ 388 (428)
T PF13347_consen 384 LVGYD 388 (428)
T ss_pred HhCcC
Confidence 66543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-14 Score=142.13 Aligned_cols=336 Identities=16% Similarity=0.177 Sum_probs=223.5
Q ss_pred HHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008792 42 ERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVH 121 (553)
Q Consensus 42 ~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~ 121 (553)
.+-..-++-+ +..-+++++|+|.+.+|++++...+...+.+|+..+++.|+ |.++.+..++++.+++..+=...
T Consensus 24 LR~~itsvgP-LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~---- 97 (395)
T COG2807 24 LRPAITSVGP-LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG---- 97 (395)
T ss_pred cchhhhhhhh-hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc----
Confidence 3333333333 44557889999999999999999999999999999999999 99999999999999988877644
Q ss_pred CCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhh
Q 008792 122 GLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASC 201 (553)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i 201 (553)
+...++.+-.+.|.|.+..+...++.+-+-||++ -+..+++|.+..++|+.+++.+
T Consensus 98 -----------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~l 153 (395)
T COG2807 98 -----------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAAL 153 (395)
T ss_pred -----------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhh
Confidence 3667899999999999999999999999999976 4788999999999999999999
Q ss_pred heeecccc-cchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhh
Q 008792 202 LVWIQTNV-GWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLD 280 (553)
Q Consensus 202 ~g~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (553)
...+.++. +|+....+-+...+++++.++... .+++.+.... +
T Consensus 154 avpla~~~~gW~~aL~~WAl~allAl~~WlPq~--~r~~~~~~~~----------------------------~------ 197 (395)
T COG2807 154 AVPLAQHSGGWRGALGFWALLALLALLIWLPQA--LREQAASIAT----------------------------K------ 197 (395)
T ss_pred hhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc--cccccccccc----------------------------c------
Confidence 98887776 799988877777777766655432 1111110000 0
Q ss_pred hccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccccccc
Q 008792 281 KAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSL 360 (553)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (553)
.. .....|+. .......+.+-+....+|.....++.++.+++. +.. ..+.
T Consensus 198 -~~---------~~~~vw~~--------~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~--sa~----------~aG~ 247 (395)
T COG2807 198 -LV---------SVRKVWRS--------PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL--SAA----------EAGS 247 (395)
T ss_pred -cc---------cccccccC--------chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC--CHH----------Hhhh
Confidence 00 00112221 111112233344445555566666665554332 111 1111
Q ss_pred cchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHH
Q 008792 361 FDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQ 440 (553)
Q Consensus 361 ~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (553)
...+ ..+.+...+....-+.+|.. +.+.......+.+.++++.+.+.. .+..++|
T Consensus 248 llsl-~~l~~~~~~ll~P~la~R~~------n~r~~~~~~~~~~l~G~~G~~~~P-----------------~~~~~lw- 302 (395)
T COG2807 248 LLSL-MQLAQLPTALLIPLLARRSK------NQRPLVVLALLLMLVGLVGLLLAP-----------------GQLPILW- 302 (395)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHHHHHHhh-----------------hhHHHHH-
Confidence 1111 11111111221222445422 122445555666666666555542 1123333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcccC-hhhHHHHHHHHHHHHHHHHHHhhHhhhhcccccc
Q 008792 441 VPQYFIIGCAEVFTFIGQLEFFYEQAP-DAMRSLCSALSLTTAALGNYLSTLLVNIVTDFST 501 (553)
Q Consensus 441 i~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~ 501 (553)
.++.|+|.+..+|...+++...++ ++..+.-+|+.|.+..+-.++||.++|.+.|.++
T Consensus 303 ---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 303 ---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred ---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 488899999999999999888877 4556677889999999999999999999998765
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-15 Score=158.80 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=120.5
Q ss_pred HHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCC
Q 008792 52 NLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRN 131 (553)
Q Consensus 52 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (553)
....++..++|-+ ....|+.+.+.++..+..++.|+|+|.+ |||..++.+.++..+|.++++-+
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA-------------- 128 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA-------------- 128 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC--------------
Confidence 3456788888876 5677888999999999999999999999 99999999999999999999866
Q ss_pred CcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccc
Q 008792 132 VCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGW 211 (553)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~ 211 (553)
.+...++.+..+.|+|.|... .....++|..|.+. |..+..+.....-.....+|.++..+....+|
T Consensus 129 ------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W 195 (599)
T PF06609_consen 129 ------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGW 195 (599)
T ss_pred ------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCc
Confidence 457789999999999987665 44566899999877 87777666655555555677777666667799
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 008792 212 GWGFGIPAVAMAIAVVSF 229 (553)
Q Consensus 212 ~~~f~i~~~~~~~~~~~~ 229 (553)
||.|++.++...++++..
T Consensus 196 Rw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 196 RWIFYIFIIWSGIALVLI 213 (599)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 999999988777665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-15 Score=153.69 Aligned_cols=389 Identities=9% Similarity=0.019 Sum_probs=220.2
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH--
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY-- 107 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~-- 107 (553)
++.|......++..+++-...++.+.++++..|+|.++.|.+.++..+...+.+|+.|.++||+ |.||.++....+.
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 4566666777777777777889999999999999999999999999999999999999999999 8666544333222
Q ss_pred HHHHHHH-HhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhccccc----ccccccccccCCCCCchHhHhhhhh
Q 008792 108 VIGMTIL-TMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGI----KPCVSSFGADQFDDYDEAEKKKKSS 182 (553)
Q Consensus 108 ~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~r~~ 182 (553)
.++-... ... |.++ .+ +.++.++.++..+.. .|...++.-+.... .+-
T Consensus 86 l~~pff~~v~~---pll~-------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--------~~f 138 (412)
T PF01306_consen 86 LFGPFFIYVFG---PLLQ-------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--------NGF 138 (412)
T ss_dssp TCHHHHHHTHH---HHHH-------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--------HSS
T ss_pred HHHHHHHHHHH---HHHH-------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--------hcC
Confidence 1222222 111 1000 01 222333333333333 33333322222111 233
Q ss_pred hHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhh
Q 008792 183 FFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEF 262 (553)
Q Consensus 183 ~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (553)
=+|-..+.+++|.+++..++|.+.+ .+-+..||+.....++..++.+..+++.+++.+..+.
T Consensus 139 eYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~----------------- 200 (412)
T PF01306_consen 139 EYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA----------------- 200 (412)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT-----------------
T ss_pred CcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc-----------------
Confidence 3555788889999999999998876 4556778876655544444444443322211110000
Q ss_pred hhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHH-HHHHHhhccccceEEeeec
Q 008792 263 AVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIG-IVFSAVYSQMGTLFVLQGN 341 (553)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 341 (553)
+..++++.+..| .....+.|+++....+.... ..+....+|++.++.....
T Consensus 201 ------~~~~~~~~~~~~----------------------~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~ 252 (412)
T PF01306_consen 201 ------LGAKKDKVSLKD----------------------VLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQ 252 (412)
T ss_dssp ------SSS------HHH----------------------HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred ------cccCCCCCcHHH----------------------HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000000000000 00111122333222222222 3333444454444432211
Q ss_pred ccCcCCCCCcccccccccccchhhhH---HHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008792 342 TMDLHIDNSFEIPSASLSLFDTISVI---FWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVR 418 (553)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~ 418 (553)
.. +.+...++..+++.++ +...+..+ +.+| +++++.+.++..++.+-.+..++.
T Consensus 253 ---~~-----~~g~~~~G~l~s~~v~~E~~~m~~~p~----li~r-------ig~k~~Lllag~i~~iRi~~~~~~---- 309 (412)
T PF01306_consen 253 ---SA-----GQGNQMYGYLWSVQVFLEALMMFFSPW----LINR-------IGAKNLLLLAGVIMAIRIIGSGFA---- 309 (412)
T ss_dssp ---SH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------H-HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred ---cc-----ccChhHHhHHHHHHHHHHHHHHHHHHH----HHHh-------cChHhHHHHHHHHHHHHHHHHhhh----
Confidence 10 1112223333333332 22333333 4555 455567778888888888877765
Q ss_pred HHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHH-HHHHHHHHHHhhHhhhhcc
Q 008792 419 LREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALS-LTTAALGNYLSTLLVNIVT 497 (553)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~ig~~l~~~i~ 497 (553)
.+.+++.+.-.+.++-..+......-|+.+.+|++..++...+. ++..++|..+.+.+.|.+.
T Consensus 310 ----------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly 373 (412)
T PF01306_consen 310 ----------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY 373 (412)
T ss_dssp -----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred ----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 36667777778888888888888899999999999999998885 6888999999999999887
Q ss_pred ccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008792 498 DFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKK 547 (553)
Q Consensus 498 ~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~ 547 (553)
|.. ++..+|++.+++.++..++..+..++.++..
T Consensus 374 d~~----------------G~~~tylimg~iv~~~~li~~f~l~~~~~~~ 407 (412)
T PF01306_consen 374 DRI----------------GFQHTYLIMGLIVLPFTLISAFTLKKDKKQI 407 (412)
T ss_dssp HHH----------------HHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred hhc----------------CcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence 643 3455788999888888777777776655433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=152.82 Aligned_cols=379 Identities=13% Similarity=0.086 Sum_probs=215.1
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccc-----hHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLG-----RYWTIASFSII 106 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----r~~~~~~~~~~ 106 (553)
+.++....+...+. +.+...+++++++++|+|..+.+...+...+...+-.+ +|.++||+ + ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence 34555567777777 77777888999999999999998888888777777555 99999999 7 67777777655
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.. ......++.. + .......+.+++.+++.+...+...++..|..+ ++++ .++...++
T Consensus 105 ~~-~~~~~~l~~~-~----------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~ 162 (468)
T TIGR00788 105 GS-AILYGLLPGK-V----------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSW 162 (468)
T ss_pred HH-HHHHHhcccc-c----------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeH
Confidence 42 1222222210 1 123334447888899999999999999999998 4421 13344556
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceee-ccCCCCChHHHHHHhhhhhccchhhhhc
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYR-YQKPGGSPLTRICQSLLYETADAEFAVI 265 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (553)
.+...++|..+|+.++|.+.+..+|+..|++.+++.++......+. ++.+ ...|+..+.... ...
T Consensus 163 ~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~-~E~~~~~~~~~~~~~~~-----~~~-------- 228 (468)
T TIGR00788 163 MWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS-KERRAFVRPRIGTYLEM-----NMA-------- 228 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc-ccccccccccccccchh-----hhh--------
Confidence 6666779999999999999998999999998887776664433332 2211 011111000000 000
Q ss_pred cccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCc
Q 008792 266 GSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDL 345 (553)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (553)
.. .....+..+ ...+.. ......+.+...+.+.+.. +..........+..+..
T Consensus 229 ---~~----~~~~~~~~~------------~~~~~l--~~~l~~~~i~~~l~fifl~--~~~~~~~~~~~f~~~~~---- 281 (468)
T TIGR00788 229 ---LL----TLGVLANVK------------VQILGL--RGAIQLLEIAKPLIFIFLS--YANLPGASGSVFCATTQ---- 281 (468)
T ss_pred ---hh----hhhHHHHHH------------HHHHHH--HHHHhcHHHHHHHHHHHHH--HhhcCCCCceeEEEEcc----
Confidence 00 000000000 000000 0000011111111111110 11111111122222111
Q ss_pred CCCCCccccccccccc---chhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008792 346 HIDNSFEIPSASLSLF---DTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREV 422 (553)
Q Consensus 346 ~~~~~~~~~~~~~~~~---~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~ 422 (553)
.. +.++...+.. .++..++...+.++ +.+| ++.++.+.++.++.+++.+........ ..
T Consensus 282 ~l----G~s~~~~G~~~~~~~v~~i~g~~~~~~----~~~~-------~~~r~~l~~~~~l~~~~~~~~~~l~~~---~~ 343 (468)
T TIGR00788 282 CL----PGGPSFSGMSKVVGNLGSLCGVGGYDR----FLKT-------FPYRLLFGVTTLLYTLSSLFDLILVKR---WN 343 (468)
T ss_pred cC----CCCcchhhhHHHHHHHHHHHHHHHHHH----HHhh-------CCHHHHHHHHHHHHHHHHhCceeeeec---cc
Confidence 11 1223322222 22222333333322 3333 566677777777777766543221100 00
Q ss_pred hhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhcccccc
Q 008792 423 KKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFST 501 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~ 501 (553)
...+ ....++.+...++.+++.++.+.+...++.+..|++.+|+..|+.++...+|..+++.+++.+.+..+
T Consensus 344 ~~~g-------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 344 LAFG-------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred cccC-------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0000 01233445556788888888888889999999999999999999999999999999998888877554
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-14 Score=150.44 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=130.6
Q ss_pred hhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCC
Q 008792 57 LRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPT 136 (553)
Q Consensus 57 l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (553)
+.+++++...+.+.+.+++.+++.++.+++|.|.||+ .-.+.+....+...+-.++.+..
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~------------------- 131 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV------------------- 131 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3467888889999999999999999999999999999 87777766666655555555544
Q ss_pred chhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheee------ccccc
Q 008792 137 GLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWI------QTNVG 210 (553)
Q Consensus 137 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l------~~~~~ 210 (553)
.+++.+++.|++.|+..++.+|+...+++.++.+++ |+..+++++...++|.++|..+...+ ....|
T Consensus 132 -~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g 204 (495)
T KOG2533|consen 132 -HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG 204 (495)
T ss_pred -hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence 357889999999999999999999999999999998 99999999999999999999988775 23568
Q ss_pred chhhhHHHHHHHHHHHHHHHhccceeec
Q 008792 211 WGWGFGIPAVAMAIAVVSFFAGSRLYRY 238 (553)
Q Consensus 211 ~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 238 (553)
|||.|.+.+++.++..++.++..|..+.
T Consensus 205 W~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred ceeehhHHHHHHHHHHheEEEEecCChh
Confidence 9999999998887777666666665544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-13 Score=146.44 Aligned_cols=179 Identities=10% Similarity=0.005 Sum_probs=130.1
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHH
Q 008792 26 TGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI 105 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 105 (553)
.++|..+...+++..+... .|++. .....+++++|.|..+.+++.+... ...++.+++|+++||+ |||+++.++.+
T Consensus 24 ~~Rw~~lva~~~~~~~~g~-~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~l 99 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSF-MYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMT 99 (591)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 4455544444444444333 34433 4455678999999999998887643 3345677889999999 99999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 106 IYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
+..++.++++++.+- . -..+++.+++.|++.|+|.+...+.....+.++|| ++ ||++.+
T Consensus 100 l~~iG~ll~ala~~~-~-------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~G 158 (591)
T PTZ00207 100 VFCLGTLLFALTFQE-V-------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVA 158 (591)
T ss_pred HHHHHHHHHHHHhcc-c-------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHH
Confidence 999999999876210 0 01358889999999999999888888888999997 45 999999
Q ss_pred HHHHHHHHHHHH-hhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 186 WFYFSINIGALV-AASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 186 ~~~~~~~~G~~~-~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
+...+.++|+++ +++..+++. .+|+..|++.+++.++..++.+.
T Consensus 159 i~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 159 IMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999975 555555544 45777777666665555444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-13 Score=144.98 Aligned_cols=171 Identities=9% Similarity=0.076 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc---cchHHHHH-HHHHHHHHHHH
Q 008792 37 GNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY---LGRYWTIA-SFSIIYVIGMT 112 (553)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~-~~~~~~~i~~~ 112 (553)
+..+..++.+..+..++..|+++.+|+++..+|.+..+.-+.-++..|+.|+++||. +||||..+ ++.+..+++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 556667777777788899999999999999999999999999999999999999973 37766555 56677777776
Q ss_pred HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 113 ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
++... |.. +.......+++.-.+..++..+......++.+|+.++.++ |.+..++...+.+
T Consensus 96 llf~~---p~~-----------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s~r~~~~~ 156 (460)
T PRK11462 96 LAYST---PDL-----------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQSWRFVLAT 156 (460)
T ss_pred HHHhC---CCC-----------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHHHHHHHHH
Confidence 65533 210 0112234455555566888888888888999999986553 9999999988999
Q ss_pred HHHHHhhhhheeeccc-------ccchhhhHHHHHHHHHHH
Q 008792 193 IGALVAASCLVWIQTN-------VGWGWGFGIPAVAMAIAV 226 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~-------~~~~~~f~i~~~~~~~~~ 226 (553)
+|..+++.+...+... .+|+....+.+++.++..
T Consensus 157 iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 157 AGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 8888887765443332 246654444444433433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-12 Score=137.98 Aligned_cols=338 Identities=14% Similarity=0.048 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHH-HHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHH
Q 008792 69 VNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIAS-FSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGL 147 (553)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (553)
+...++..+...+..|+.|-++|+- |+||.++. ..++.++++.++.+.. + .+++...+..
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~--~----------------~~~~~~~~l~ 133 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS--P----------------GQWWLALVLF 133 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC--c----------------chHHHHHHHH
Confidence 4567788889999999999999998 76665554 4445555556555541 1 2344444445
Q ss_pred HHHhhcccccccccccccccCCCCCchHh--------------------HhhhhhhHHHHHHHHHHHHHHhhhhheeecc
Q 008792 148 YLIALGTGGIKPCVSSFGADQFDDYDEAE--------------------KKKKSSFFNWFYFSINIGALVAASCLVWIQT 207 (553)
Q Consensus 148 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~ 207 (553)
++.-++.+......++++.|+.++++... ...|++..+.-....++|+.+.-.+.-.+..
T Consensus 134 iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~ 213 (477)
T PF11700_consen 134 IIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVI 213 (477)
T ss_pred HHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777788999999998876200 0001777777777788888877665443321
Q ss_pred --------cccchhhhHHHHHHHHHHHHHHHhccceeec--cCCCCChH-HHHHHhhhhhccchhhhhccccccccCCcc
Q 008792 208 --------NVGWGWGFGIPAVAMAIAVVSFFAGSRLYRY--QKPGGSPL-TRICQSLLYETADAEFAVIGSHKLDHTKQL 276 (553)
Q Consensus 208 --------~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (553)
....|..+.+.++..++..+..+...|+.+. ..|+.... ....+.+....
T Consensus 214 ~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~------------------- 274 (477)
T PF11700_consen 214 SPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTF------------------- 274 (477)
T ss_pred cCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHH-------------------
Confidence 1234666666665554444444444443322 11111111 11111111100
Q ss_pred chhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccc
Q 008792 277 SFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSA 356 (553)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (553)
++.++.|.+++.+..++...--......+...+.. ..++ ++..
T Consensus 275 ---------------------------k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~------~~lg----~s~~ 317 (477)
T PF11700_consen 275 ---------------------------KEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYAT------EVLG----MSTT 317 (477)
T ss_pred ---------------------------HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcC----cCHH
Confidence 00111112211111111000000000011111111 1111 1111
Q ss_pred cccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhcccccCCCcc
Q 008792 357 SLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLT--AGTLELVRLREVKKHNYYELKHIP 434 (553)
Q Consensus 357 ~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~ 434 (553)
. .....+...+...+...+..++.||+..| +.+.+..++++..+..+. +++... ..| .
T Consensus 318 ~-l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k-----~~~~l~~~l~~~~~i~~~g~~G~~~~-------~~g-------~ 377 (477)
T PF11700_consen 318 Q-LIVFGLVVQIVAIIGALLFGWLQDRFGPK-----TKRTLLISLILWIIIPLYGLFGFWPS-------FFG-------L 377 (477)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHHHHHHHHHHhhhc-------ccC-------c
Confidence 1 11112222233333444444456664432 114444444444222221 222110 001 1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhcccccc
Q 008792 435 MSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFST 501 (553)
Q Consensus 435 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~ 501 (553)
.+.+.+.+..++.|+..+...+..-++..++.|++..+...|++.+.......+||++.+.+.+.++
T Consensus 378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2444455566788999999999999999999999999999999999999999999999999988664
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=139.47 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=147.9
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhcc-chHHHHH-HHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYL-GRYWTIA-SFSII 106 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Gr~~~~~-~~~~~ 106 (553)
.|.+|++.+..++..+..|++..|.|.|+.+..|+|..++++..+.+-.+...+.+++||+|||++ |||...- +.++.
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~ 330 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL 330 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 377899999999999999999999999999999999999999999999999999999999999997 6665444 44555
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
..++.+...+. |. .+..+..+..+..|+..-+....+-....|..|++. .|++.|+
T Consensus 331 i~~~~~~~w~~---~~---------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf 386 (448)
T COG2271 331 ITASLVLYWLA---PN---------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGF 386 (448)
T ss_pred HHHHHHHHHcC---CC---------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhch
Confidence 55555555554 21 356677777777777776666666777889999987 9999999
Q ss_pred HHHHHHH-HHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhc
Q 008792 187 FYFSINI-GALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 187 ~~~~~~~-G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
......+ |+.++....|++.+.+||...|++..+..+++.+.+...
T Consensus 387 ~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 387 VGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 8888888 999999999999999999999987776666665554433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-11 Score=128.25 Aligned_cols=366 Identities=14% Similarity=0.078 Sum_probs=220.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc---cchHH-HHHHHHHHHHH
Q 008792 34 YILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY---LGRYW-TIASFSIIYVI 109 (553)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~~~~~~~~~~i 109 (553)
.--...+..+...-.+..++..|.++..|+++..+|.+..+.-+.=++..|+.|.++||. +||+| -++.+.+..++
T Consensus 16 ~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i 95 (467)
T COG2211 16 GYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAI 95 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHH
Confidence 334556677777777888999999999999999999999999999999999999999985 25544 55567788888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
.+.++..+.. .+ ........++.-.+.++++........++.+++.++.++ |.+..++-..
T Consensus 96 ~~~l~F~~p~-~~-------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R~~l~s~R~~ 156 (467)
T COG2211 96 VAVLLFITPD-FS-------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----RASLTSWRMV 156 (467)
T ss_pred HHHHHHcCCC-cc-------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----HHHHHHHHHH
Confidence 8888776621 11 113344455666778899999988889999999977653 9999999888
Q ss_pred HHHHHHHHhhhhheeecc-------cccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhh
Q 008792 190 SINIGALVAASCLVWIQT-------NVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEF 262 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~-------~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (553)
..++|..+...+.+.+.. ..||+....+-+++..+.+...+...++...+..+.++
T Consensus 157 ~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~----------------- 219 (467)
T COG2211 157 FASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT----------------- 219 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-----------------
Confidence 888887776665554432 34566544444443333333333322221110000000
Q ss_pred hhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecc
Q 008792 263 AVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNT 342 (553)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (553)
+...++.+.-. .....|-++..+...+..............++...-.
T Consensus 220 ----------~~~~~~~~~~~---------------------~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~l- 267 (467)
T COG2211 220 ----------GVKLKLKDSFL---------------------LIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL- 267 (467)
T ss_pred ----------cccccHHHHHH---------------------HHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEc-
Confidence 00000000000 0001111111111222222222222223333333211
Q ss_pred cCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008792 343 MDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREV 422 (553)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~ 422 (553)
... ...+...........++..++..+ +.+| +++++....+.++..++.+.+.+..
T Consensus 268 -g~~-----~l~~~~~~~~~~~~~l~~~~~~p~----L~~~-------~gkk~~~~~~~~~~~i~~~~~~f~~------- 323 (467)
T COG2211 268 -GDP-----ELFAYLLLLASGAGLLIGLILWPR----LVKK-------FGKKKLFLIGLLLLAVGYLLLYFTP------- 323 (467)
T ss_pred -CCh-----HHHHHHHHHHHHHHHHHHHHhHHH----HHHH-------hchHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 111 011111111111112222333333 4555 3445778888888888888777752
Q ss_pred hhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhccc-------ChhhHHHHHHHHHHHHHHHHHHhhHhhhh
Q 008792 423 KKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQA-------PDAMRSLCSALSLTTAALGNYLSTLLVNI 495 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~-------P~~~rg~~~g~~~~~~~lg~~ig~~l~~~ 495 (553)
..+.++.++..++.++|.+...+..++++.|.. -.+..|...|...+...+|.+++..+.++
T Consensus 324 -----------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 324 -----------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred -----------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 235666677778889999999999888887754 34567888999999999999999999998
Q ss_pred ccccccC
Q 008792 496 VTDFSTR 502 (553)
Q Consensus 496 i~~~~~~ 502 (553)
+....+.
T Consensus 393 ~L~~~Gy 399 (467)
T COG2211 393 ILGAIGY 399 (467)
T ss_pred HHHHcCC
Confidence 8765543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9e-14 Score=131.81 Aligned_cols=401 Identities=12% Similarity=0.139 Sum_probs=224.2
Q ss_pred cchhhhhhHHHHHHHHHHHh--HHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGI--NTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~--~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
+++..++++.+....+|+.. -..+..+.+.+.+++.++..++.+.++.-+.+...++|++.||.+|-|..-++-.++.
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 33444444444333333322 2235566677778888888899999999999999999999999988877666666666
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
.+|-++.+...- ...+|....+|++.|+|.-....+-+.++.-+|..++ .+-++|++
T Consensus 121 ~~GqliFa~Ggi-----------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlq 177 (459)
T KOG4686|consen 121 FLGQLIFAAGGI-----------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQ 177 (459)
T ss_pred HHHHHHHHhchH-----------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHH
Confidence 666666554311 1458899999999999998888888999999999888 99999998
Q ss_pred HHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhh-hhccchhhhhcc
Q 008792 188 YFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLL-YETADAEFAVIG 266 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 266 (553)
-....+|..+--.+.+++.++.+--.+ ...-.++++.+.+-. +. ........+ ....| +.+...
T Consensus 178 lSvAR~GstvNf~lm~~ly~~~~~~~~---~~ghT~LG~~l~~~~-~t----------c~~slical~lg~~D-~rAeri 242 (459)
T KOG4686|consen 178 LSVARLGSTVNFLLMPFLYDTMGRMFP---GVGHTLLGLWLCFEV-KT----------CKQSLICALSLGLSD-DRAERI 242 (459)
T ss_pred HHHHHhhceeeeeecHHHHHHHHHhcc---cchHHHHHHHHHHHH-HH----------HHHHHHHHHHhhhhh-hHHHHH
Confidence 888889988877777777664331100 001111111110000 00 000000000 00000 001011
Q ss_pred ccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcC
Q 008792 267 SHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLH 346 (553)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (553)
.++.+. ...+.......+.++ ..+.. +...++.++..+..+.+ .-....+..
T Consensus 243 lh~e~g------------~~Ge~pkLtdv~~f~-------ppfw~------~~iicv~yyva~fPFi~---lg~~fF~~r 294 (459)
T KOG4686|consen 243 LHLEEG------------FLGEEPKLTDVNTFY-------PPFWV------LVIICVLYYVAWFPFIT---LGPMFFQKR 294 (459)
T ss_pred HhhhcC------------cccCCcccccccccC-------ccHHH------HHHHHHHHHHHHHHHhh---hhHHHHHHh
Confidence 110000 000000000000000 00111 11222222222222221 111222222
Q ss_pred CCCCcccccccccccchhhh---HHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008792 347 IDNSFEIPSASLSLFDTISV---IFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVK 423 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~---i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~ 423 (553)
+++++...+.++...- .+..|+.+.+ .+|...+ .+.+..+.+....+-..+.+.
T Consensus 295 ----fGlS~~~a~~i~s~vy~Isav~spvfg~i----~Dk~G~n------~~wv~~a~~~tl~~H~~l~Ft--------- 351 (459)
T KOG4686|consen 295 ----FGLSAVSAGNILSTVYGISAVLSPVFGAI----SDKYGFN------LWWVASACILTLLGHSGLFFT--------- 351 (459)
T ss_pred ----hCCChhhccchhhhhhhhhhhhhhhHHHh----Hhhhcce------ehhHHHHHHHHHHHhhhHHhh---------
Confidence 2344444444444333 3445555554 4443211 233444444444444333332
Q ss_pred hcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCC
Q 008792 424 KHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRH 503 (553)
Q Consensus 424 ~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~ 503 (553)
.+.......+.|+...+.....+-.+..+.|++.-|++.|..++++.+|-++.+.+.+++.|..+.
T Consensus 352 -------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~- 417 (459)
T KOG4686|consen 352 -------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS- 417 (459)
T ss_pred -------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc-
Confidence 222334567788888888877888899999999999999999999999999999999999875432
Q ss_pred CCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008792 504 GKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYT 544 (553)
Q Consensus 504 ~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~ 544 (553)
+.....+|.+++.+++....+.+.+-++.+
T Consensus 418 -----------y~~le~ffl~~~~~aL~svgil~~~N~kq~ 447 (459)
T KOG4686|consen 418 -----------YDNLEAFFLIIGLMALTSVGILFYLNKKQS 447 (459)
T ss_pred -----------hhhHHHHHHHHHHHHHHHHHHHhheecccc
Confidence 123455677777777777766666555443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.6e-13 Score=137.89 Aligned_cols=175 Identities=13% Similarity=0.014 Sum_probs=131.9
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
++..+..+...+.....++.+..++|.|+++.++.++.+.+.+.+...+...++.+++|+++||+ |||+.+..+.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~ 293 (393)
T PRK15011 215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGV 293 (393)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 34444444444555555555667899999999999999999888887788888999999999999 99998877765554
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
+........ .+.+.+++.+++.+++.+...+..+++..|.+|+ + |+++.++++
T Consensus 294 ~~~~~~~~~--------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~ 346 (393)
T PRK15011 294 CFYAGMLMA--------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYT 346 (393)
T ss_pred HHHHHHHHH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHH
Confidence 444333322 2345556677777777666666666777888874 4 788999988
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
...++|..++|.++|++.+.+||+..|++..+..++++...+.
T Consensus 347 ~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 347 NTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999899999998887777776665554
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-13 Score=138.81 Aligned_cols=191 Identities=14% Similarity=0.077 Sum_probs=147.9
Q ss_pred cccCCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhh-hcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccch-HHHH
Q 008792 23 KKETGTWKACPYILGNECCERLAYYGINTNLVNYLRF-ELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGR-YWTI 100 (553)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~ 100 (553)
...+.+||.+++..+..+.....++.+.+..-+|+++ +.+.+.+-.|++++...++..+..|..|++..|. ++ |+.+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence 3446889999999999999999998888888889865 5788888999999999999999999999999998 75 8899
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhh
Q 008792 101 ASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK 180 (553)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 180 (553)
+.+.++.+++.++.......+. ...++++++|++.|+|.+.. ...-+|++|....++ |
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~---------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d------R 163 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPN---------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED------R 163 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc------h
Confidence 9999999999999844433333 35788999999999998865 455789999888877 8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhheeec----ccc---------cchhhhHHHHHHHHHHHHHHHhcccee
Q 008792 181 SSFFNWFYFSINIGALVAASCLVWIQ----TNV---------GWGWGFGIPAVAMAIAVVSFFAGSRLY 236 (553)
Q Consensus 181 ~~~~~~~~~~~~~G~~~~~~i~g~l~----~~~---------~~~~~f~i~~~~~~~~~~~~~~~~~~~ 236 (553)
.++++....+..+|..+||.+...+. ..+ -|..+-|+.+++.++..+......++.
T Consensus 164 ~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 164 PRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 88988877766677777766654432 111 134455677776666666665555443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-13 Score=142.31 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=129.0
Q ss_pred CccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 28 TWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
+|+.........++.+..+|++..++|.|+++.+|.+..+.++......++..++.+++|+++||+ |||+.++.+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 344444444455667788899999999999888999988888888888889999999999999999 9999988877654
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
.++......... . .+...+++++++.+++.+...+...++..|.+|++. |++++++.
T Consensus 327 ~~~~~~~~~~~~--~---------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~ 383 (490)
T PRK10642 327 FVLAIPAFILIN--S---------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAA 383 (490)
T ss_pred HHHHHHHHHHHh--C---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHH
Confidence 443332221110 0 235566778888887776666667788889999998 99999974
Q ss_pred HHHHHHHHHHhhhhheeecccc-cchhhhHHHHHHHHHHHHHHHh
Q 008792 188 YFSINIGALVAASCLVWIQTNV-GWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~-~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
+....+++.++|.+.+++.+.. +|+.++++..+..+++++..++
T Consensus 384 ~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 384 FNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 4445666788999999887654 4666655544444444444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.8e-13 Score=136.17 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=135.4
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+..+......++..........+.++|. ++++.++.+.+...+...++..++.++.|+++||+ |||+.+.++.+...+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV 282 (377)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence 3455555555555565555566677775 56888888899999999999999999999999999 999999998888888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+..+.....+ .+...++...++.+++.+...+..+++..|.+|+++ |++.+++.+.
T Consensus 283 ~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~ 338 (377)
T TIGR00890 283 GMAAMLFIPM------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYT 338 (377)
T ss_pred HHHHHHHccc------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHH
Confidence 8776665421 122334455677788888888888889999999988 9999999999
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHH
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIA 225 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~ 225 (553)
..++|..++|.+.|.+.+..||++.|.+.+++.+++
T Consensus 339 ~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 339 AKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 999999999999999999999999998777665554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=140.55 Aligned_cols=176 Identities=14% Similarity=0.046 Sum_probs=133.6
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+.+|...+..++....++++..++|.|+++.+|+|..++++..+...++..++.+++|+++||+ |||+.+........+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 4577888888888888888899999999999999999999999999999999999999999999 988877665444333
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+..+..+.. . .+....++.+++.|++.............|.+|++. |+++.|+.+.
T Consensus 337 ~~~~~~~~~--~----------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~ 392 (467)
T PRK09556 337 IFTLGVYQH--A----------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGT 392 (467)
T ss_pred HHHHHHHHh--c----------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHH
Confidence 332222221 0 234445566666775433322222355669999988 9999999999
Q ss_pred HHHH-HHHHhhhhheeecc------------cccchhhhHHHHHHHHHHHHHHH
Q 008792 190 SINI-GALVAASCLVWIQT------------NVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 190 ~~~~-G~~~~~~i~g~l~~------------~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
..++ |+.++|.+.|++.+ ..||+..|++..+..+++.+..+
T Consensus 393 ~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 393 FAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 9886 77999999999988 57899999888777777655544
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.9e-11 Score=118.98 Aligned_cols=375 Identities=14% Similarity=0.121 Sum_probs=213.4
Q ss_pred hhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccc-----hHHH-HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCC
Q 008792 58 RFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLG-----RYWT-IASFSIIYVIGMTILTMSASVHGLKPLCDKRN 131 (553)
Q Consensus 58 ~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----r~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (553)
..+++++....+..++...+... ..+..|+.||+. + ||-. +..+.+..+.+..+.+.+...-.-. . ..
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~---~-~~ 80 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES---G-QQ 80 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc---c-cc
Confidence 45788888888887777666554 689999999999 6 5544 4456666666665555442111100 0 00
Q ss_pred CcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccc
Q 008792 132 VCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGW 211 (553)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~ 211 (553)
.-.+.+.......+...+.|+|.+...++..++++|..|+++ |+++.++.+.+.-+|.+++..+.|.+.+.++-
T Consensus 81 ~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~ 154 (403)
T PF03209_consen 81 SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP 154 (403)
T ss_pred cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 000011223345566777899999999999999999999998 99999999999999999999999977765543
Q ss_pred hhhh----HHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccccCC
Q 008792 212 GWGF----GIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETP 287 (553)
Q Consensus 212 ~~~f----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (553)
.-.. ....+..++.++..+-..++.++..+. .+++...+.+.
T Consensus 155 ~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~----------------------------~~~~~~~f~~a------ 200 (403)
T PF03209_consen 155 ERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAA----------------------------AERPRPPFREA------ 200 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccC----------------------------CCCCCccHHHH------
Confidence 2221 222222333333333322222211100 00011111111
Q ss_pred CCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccc---cccccchh
Q 008792 288 SDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSA---SLSLFDTI 364 (553)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 364 (553)
|++... + +..++++ ..++.....+++...-..++ -++-++++++ ..+.....
T Consensus 201 ----------~~~~~~-~-~~a~~f~--~fl~l~t~a~~~QD~iLEPy-----------gg~Vfgmsv~eTT~Lta~~~~ 255 (403)
T PF03209_consen 201 ----------WRQVWA-S-PQARRFF--VFLFLGTLAFFMQDVILEPY-----------GGEVFGMSVGETTRLTAFWGG 255 (403)
T ss_pred ----------HHHHHh-C-CChhHHH--HHHHHHHHHHHhhHHHcCCc-----------hhHHcCCCHHHHHHHHHHHHH
Confidence 000000 0 1112221 11222222222211111110 0111223222 23344445
Q ss_pred hhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHH
Q 008792 365 SVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQY 444 (553)
Q Consensus 365 ~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 444 (553)
+..+...+.++. +.+| .++.+....|..+.++++....... ...+.+.+-...
T Consensus 256 G~L~G~~~~g~~---l~~~-------~~~~~~a~~G~~~~~~~f~lii~a~-----------------~~~~~~~~~~~~ 308 (403)
T PF03209_consen 256 GTLLGMLLAGFL---LSRR-------LGKKRTAALGCLLGALAFALIILAG-----------------PLGSPWLFRPGV 308 (403)
T ss_pred HHHHHHHHHHHH---hcCC-------CCchHHHHHHHHHHHHHHHHHHHHH-----------------hcccchHHHHHH
Confidence 555555555553 2233 2333455667777777766655442 113566777788
Q ss_pred HHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHH
Q 008792 445 FIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWL 524 (553)
Q Consensus 445 ~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i 524 (553)
+++|++.+.......+...+.++++..|..+|.+...+.+...+|..+.+.+.|.... +..+.....|..+|.+
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~------~~~~~~~~aY~~VF~l 382 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA------LFGNSPALAYGVVFAL 382 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988875531 1111122345555555
Q ss_pred HHHHHHHHHHHH
Q 008792 525 LALLSVLNLGVY 536 (553)
Q Consensus 525 ~~~~~~v~~~~~ 536 (553)
=++..++++.+.
T Consensus 383 Ea~ll~~a~~ll 394 (403)
T PF03209_consen 383 EAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=137.89 Aligned_cols=181 Identities=15% Similarity=0.073 Sum_probs=130.4
Q ss_pred CccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 28 TWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
+++.........++....+|....+.|.|+++.+|++......+.........++.++.|+++||+ |||+.+..+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~ 326 (438)
T PRK09952 248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG 326 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence 344333444456677788888899999999999999887665555566677788899999999999 9999988887665
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH-
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW- 186 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~- 186 (553)
.++......... .. .....++...++.+++.+...+..+++.+|.+|.+. |+++.++
T Consensus 327 ~~~~~~~~~~~~-~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~ 384 (438)
T PRK09952 327 TLSAFPFFMALE-AQ---------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVG 384 (438)
T ss_pred HHHHHHHHHHHH-cC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHH
Confidence 554433332210 00 123334445566678877777888899999999987 9999988
Q ss_pred HHHHHHHHHHHhhhhheeecccc--cchhhhHHHHHHHHHHHHHHHh
Q 008792 187 FYFSINIGALVAASCLVWIQTNV--GWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~--~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
++.+..+|+.++|.+.+++.+.. +|+..+.+.++..+++.+..+.
T Consensus 385 ~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 385 YQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 55556689999999999987743 4777777666666666555543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-13 Score=138.23 Aligned_cols=169 Identities=18% Similarity=0.086 Sum_probs=131.7
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+.++......++....++.+..++|.|++++++.+..+.+.......++..++.++.|+++||+ |||+.+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence 3466677777778888888889999999999999999999999999999999999999999999 999987765544433
Q ss_pred HH-HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH-H
Q 008792 110 GM-TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW-F 187 (553)
Q Consensus 110 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~ 187 (553)
.. ....... .. .+.+.++....+.+++.+...+..++++.|.+|+++ |++++++ +
T Consensus 298 ~~~~~~~~~~--~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~ 354 (394)
T TIGR00883 298 LAVPLLMALL--DS---------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAY 354 (394)
T ss_pred HHHHHHHHHh--cC---------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehh
Confidence 33 2221110 00 235556667778888888888899999999999988 9999998 5
Q ss_pred HHHHHHHHHHhhhhheeeccccc-chhhhHHHHHHH
Q 008792 188 YFSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAM 222 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~ 222 (553)
+....+|..++|.++|++.+..| |+..++..++..
T Consensus 355 ~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 355 NLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 66677899999999999999888 887666555433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=136.93 Aligned_cols=180 Identities=11% Similarity=0.005 Sum_probs=137.0
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCc--------hhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQG--------NVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIAS 102 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~ 102 (553)
.++..+...++..........+.+.|+.+ .+.+ ....+...+...+...++.++.|+++||+ |||+++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~ 286 (418)
T TIGR00889 209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLL 286 (418)
T ss_pred CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHH
Confidence 34455555555555555555667788754 4433 35668888888899999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhh
Q 008792 103 FSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182 (553)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 182 (553)
+.++..++..+...... ...+.+.+++.+++.|++.+...+....++.|.+|+++ |++
T Consensus 287 ~~~~~~v~~~l~~~~~~----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~ 344 (418)
T TIGR00889 287 SLVAWALRFGFFAYGDP----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RAS 344 (418)
T ss_pred HHHHHHHHHHHHHHcCc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence 99888887766665311 01134567778899999999888888899999999988 999
Q ss_pred hHHHHH-HHHHHHHHHhhhhheeeccc------ccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 183 FFNWFY-FSINIGALVAASCLVWIQTN------VGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 183 ~~~~~~-~~~~~G~~~~~~i~g~l~~~------~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
++++.+ ...++|..+||.++|++.+. +||+..|.+.++..+++.+.++...+
T Consensus 345 ~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 345 AQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999987 56789999999999999876 46999998877766666555444433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-12 Score=134.34 Aligned_cols=169 Identities=11% Similarity=0.077 Sum_probs=133.7
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh
Q 008792 39 ECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSA 118 (553)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~ 118 (553)
..+..+++.....+++.|+.+ .+. .+.+...+.+.++..++.++.|+++||+ |||+.+..+..+..++..+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~- 299 (399)
T PRK05122 225 LALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh-
Confidence 344455666677788888754 455 3455666777888889999999999999 99999988888777777666654
Q ss_pred cccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHh
Q 008792 119 SVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVA 198 (553)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 198 (553)
.+.+.+++.+++.|++.+...|.......|.+|+++ |++++++++...++|..++
T Consensus 300 -------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~ 354 (399)
T PRK05122 300 -------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGIT 354 (399)
T ss_pred -------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 235556778889999999888887778888888877 9999999999999999999
Q ss_pred hhhheeecccccchhhhHHHHHHHHHHHHHHHhccceee
Q 008792 199 ASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYR 237 (553)
Q Consensus 199 ~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 237 (553)
|.+.|++.+..||++.|++.+++.+++++..+...++.+
T Consensus 355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 355 GPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999899999999888877777666555544433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=133.75 Aligned_cols=172 Identities=12% Similarity=0.072 Sum_probs=134.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+.++......++.....+++..++|.|+++.+|+|..+.+...+.+.++..++.++.|+++||+ +||+.+.....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 4556666667777777888899999999999999999999999999999999999999999999 999988877666555
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
...+.... .+...+.+..++.|++.+...+...++..+..|++ +++..+....
T Consensus 284 ~~~~~~~~--------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~ 336 (394)
T PRK03699 284 LMYLFVNT--------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILT 336 (394)
T ss_pred HHHHHHHc--------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHH
Confidence 55444433 12334455667778877777777777777766643 4556778778
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHH
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSF 229 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~ 229 (553)
..++|..++|.+.|++.+..|++..+++.++..+++.+..
T Consensus 337 ~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 337 CGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 8899999999999999999999999987777666664433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=129.83 Aligned_cols=171 Identities=12% Similarity=0.014 Sum_probs=131.6
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGM 111 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 111 (553)
.+......++..........++|.|+.+++|.++.+.+...+.......++.+++|+++||+ |||+.+.++.+...+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 279 (375)
T TIGR00899 201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY 279 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence 33333444444444455566788999889999999999888877777888899999999999 99999888766555444
Q ss_pred HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHH
Q 008792 112 TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSI 191 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 191 (553)
...... .+.+.+++.+++.|++.+...+...++..|..|+ + +++++++++...
T Consensus 280 ~~~~~~--------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~ 332 (375)
T TIGR00899 280 TGLAAD--------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTG 332 (375)
T ss_pred HHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHH
Confidence 433333 2355566778888888888778778888888875 3 668999999999
Q ss_pred HHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHH
Q 008792 192 NIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 192 ~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
++|..++|.++|++.+..||+..|++.++..+++.....
T Consensus 333 ~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 333 RVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999989999999888877776666544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-12 Score=127.11 Aligned_cols=173 Identities=18% Similarity=0.220 Sum_probs=150.3
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHH-HHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYW-TIASFSIIYVI 109 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-~~~~~~~~~~i 109 (553)
.++......++..........+.+.|+.+.+|.+..+.+...+...++..++.++.|+++||+ |||+ .+..+.++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 344555556667777777788899998888899999999999999999999999999999999 9999 99999888888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+....... .+.+..++..++.|++.+...+...+++.|..|+++ |++.+++.+.
T Consensus 255 ~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 308 (352)
T cd06174 255 GLLLLALA--------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNT 308 (352)
T ss_pred HHHHHHHh--------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHH
Confidence 88877765 236677888999999999999999999999999877 9999999999
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHH
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
..++|..++|.+.+.+.+..+|+..|++.++..+++.+..+
T Consensus 309 ~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 309 FGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999889999999988877777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7e-12 Score=131.75 Aligned_cols=170 Identities=9% Similarity=-0.066 Sum_probs=130.3
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMT 112 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 112 (553)
+......++.....+....++|.|+.+ .|.+..+.+...+...++..++.++.|+++||+ |||+.+..+.+...++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~ 300 (406)
T PRK11551 223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLA 300 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence 334444455556667777888998865 799999999999999999999999999999999 999998887666666655
Q ss_pred HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 113 ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
+.... .+.+.+.+..++.|++.+...+...++..|.+|+++ |+++.++.+...+
T Consensus 301 ~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 354 (406)
T PRK11551 301 ALAAA--------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGR 354 (406)
T ss_pred HHHhc--------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhh
Confidence 55433 124445566677788777777888899999999988 9999999999999
Q ss_pred HHHHHhhhhheeecccc-cchhhhHHHHHHHHHHHHHHH
Q 008792 193 IGALVAASCLVWIQTNV-GWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~-~~~~~f~i~~~~~~~~~~~~~ 230 (553)
+|..++|.++|++.+.. +|...+++.....+++....+
T Consensus 355 ~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 355 LGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988764 455555555544444444433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-12 Score=132.35 Aligned_cols=167 Identities=14% Similarity=0.040 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhcCCchh---hhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 008792 39 ECCERLAYYGINTNLVNYLRFELNQGNV---QAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILT 115 (553)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~ 115 (553)
.++.......+.++++.|+.+..+.... ..+.+.+...++..++.+..|+++||+ |||+.+..+.....++.+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence 3344444455667788888765432221 234555666778889999999999999 999999988877766666555
Q ss_pred hhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHH
Q 008792 116 MSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGA 195 (553)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 195 (553)
.. .+.+.+++.+++.|++.+...|...+++.+..|+++ |++.+++++...++|.
T Consensus 307 ~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~ 360 (408)
T PRK09874 307 FV--------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGN 360 (408)
T ss_pred Hh--------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHH
Confidence 44 235667788889999999999988888888888887 9999999999999999
Q ss_pred HHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhc
Q 008792 196 LVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 196 ~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
.+||.++|++.+..||++.|++.+++.+++.+..+..
T Consensus 361 ~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 361 VTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777776655443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-12 Score=135.43 Aligned_cols=173 Identities=10% Similarity=0.003 Sum_probs=134.0
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhc---CCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFEL---NQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
++......++....+.....++|.|+.+.+ +.+..+.+.+.+...+...++.+++|+++||+ |||+.+..+.++.+
T Consensus 225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~ 303 (420)
T PRK09528 225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMA 303 (420)
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHH
Confidence 344444444444444445556777776543 56667788888888899999999999999999 99999999888888
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH-H
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW-F 187 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~ 187 (553)
++..+.++. .+.+.++..+++.+++.+...+....++.|.+|++. |++..+. +
T Consensus 304 ~~~~l~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~ 357 (420)
T PRK09528 304 VRIIGSGFA--------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGF 357 (420)
T ss_pred HHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehH
Confidence 887777765 236667788889998888877777788899999877 8887766 7
Q ss_pred HHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 188 YFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
++..++|.+++|.+.|++.+..||+..|.+.+++.++.....+.
T Consensus 358 ~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 358 QFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999998777666655544443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.6e-12 Score=139.70 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=107.9
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHH
Q 008792 71 NVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLI 150 (553)
Q Consensus 71 ~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 150 (553)
...+..++..++.+++|+++||+ |||++++++.++.++++++.++.. +...+++.+++.
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~--------------------s~~~ll~~~~l~ 658 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN--------------------SESAMIALLCLF 658 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc--------------------cHHHHHHHHHHH
Confidence 34556678899999999999999 999999999999888888877662 244466667777
Q ss_pred hhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHH
Q 008792 151 ALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 151 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
+++.+...+...++++|++|++. |++++|+.+....+|+++||.+++.+... +...+|++.+++.+++.++.+
T Consensus 659 g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~ 731 (742)
T TIGR01299 659 GGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL 731 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence 88777788888999999999988 99999999999999999999999987664 456677777766666555444
Q ss_pred h
Q 008792 231 A 231 (553)
Q Consensus 231 ~ 231 (553)
+
T Consensus 732 ~ 732 (742)
T TIGR01299 732 K 732 (742)
T ss_pred h
Confidence 3
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=127.13 Aligned_cols=177 Identities=13% Similarity=0.009 Sum_probs=130.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHH-HHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWT-IASFSIIYV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~-~~~~~~~~~ 108 (553)
|.++......++.......+..++|.|+++.++.+..+.+++.+...++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 4567777788888888888899999999999999999999999999999999999999999999 88861 111111111
Q ss_pred HH---HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 109 IG---MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 109 i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
++ ..+........ .+.........+.+.+.+ ..+...++..|.+|+++ |+++++
T Consensus 294 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~ 350 (399)
T TIGR00893 294 IAGLVLSLLMFATNYV----------------NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGG 350 (399)
T ss_pred HHHHHHHHHHHHhccc----------------hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHH
Confidence 11 11111110000 123333333334444444 77888999999999988 999999
Q ss_pred HHHHHHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHHHHH
Q 008792 186 WFYFSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 186 ~~~~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~~~~ 230 (553)
+.+...++|..++|.+.|++.+..| |++.|++.++..+++.+..+
T Consensus 351 ~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 351 LINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888 99998877776666655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=127.70 Aligned_cols=176 Identities=11% Similarity=-0.047 Sum_probs=136.1
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
..|......++.+.+++++..++|.|+.+ +|.+..+.+...+.+.++..++.++.|+++||+ |||+.+..+..+..++
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVG 283 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence 45666666677788888899999999976 899999999999999999999999999999999 9999998887777676
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCC-CchHhHhhhhhhHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDD-YDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ 189 (553)
..+.... +. +...+ ..++.|++.+...|.......+..++ ++ |++.+++.+.
T Consensus 284 ~~~~~~~---~~----------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 336 (393)
T PRK09705 284 FCGFIWL---PL----------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAFMQG 336 (393)
T ss_pred HHHHHHc---cc----------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHHHHH
Confidence 6554432 11 11112 22356788888788777777777754 44 8999999999
Q ss_pred HHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHHHHHhccce
Q 008792 190 SINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVVSFFAGSRL 235 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~~ 235 (553)
..++++.++|.+.|++.+..| |...|++.++..++.++......++
T Consensus 337 ~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 337 IGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998775 7888887777666666555554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=128.31 Aligned_cols=169 Identities=11% Similarity=-0.075 Sum_probs=144.1
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.++......++...++....++.++|+++ +|.++.+.+.+.+...++..++.++.|++.||+ |+|+.+.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 456777777788888888888999999965 899999999999999999999999999999999 999999999999998
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH-
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY- 188 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~- 188 (553)
...+.+.. .+.+.+++...++|+..+...+....++.+. |+++ |+++.++++
T Consensus 283 ~~~~~~~~--------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~ 335 (382)
T TIGR00902 283 RWAIIGAI--------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNA 335 (382)
T ss_pred HHHHHHhH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHH
Confidence 88888766 3577788899999999999999999999987 8776 888889876
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHH
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVS 228 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~ 228 (553)
....+|..++|.++|++.++.|+ ..|.+.+++.+++++.
T Consensus 336 ~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 336 LAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 56789999999999999999886 4566666666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-10 Score=115.39 Aligned_cols=404 Identities=12% Similarity=-0.008 Sum_probs=223.4
Q ss_pred hhhhhHHHHHHHHH---HHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAY---YGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 33 ~~~~~~~~~~~~~~---~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|+.+++..+.+.++ +.-......|..+-++ +...+-|...+|.+.+....+.+-|+.||+ |-|...+++.++.++
T Consensus 44 W~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~i 121 (480)
T KOG2563|consen 44 WVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGI 121 (480)
T ss_pred hHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHH
Confidence 55555555555555 2222334456666677 666777888899999999999999999999 999999999999999
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHH--HHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIA--VFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
|..+=.++ +.+.++ ..++ ....+..+.+...-.+.....-+.+-+|++++ |..+...-
T Consensus 122 Ga~Ir~is-s~p~v~-------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~ 181 (480)
T KOG2563|consen 122 GAWIRLIS-SLPFVP-------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLG 181 (480)
T ss_pred HHHHhhhc-cCcccc-------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHH
Confidence 99877665 223221 2233 56677777777776666555566677899988 99998888
Q ss_pred HHHHHHHHHHhhhhheeecccc------cchh--hhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccc
Q 008792 188 YFSINIGALVAASCLVWIQTNV------GWGW--GFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETAD 259 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~------~~~~--~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (553)
.++..+|.++|-++...+..+. .|.. .|+...++.++.+......+++.++.+|..+.....
T Consensus 182 v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------- 251 (480)
T KOG2563|consen 182 VMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------- 251 (480)
T ss_pred HhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh----------
Confidence 7787788887777766665432 3443 244344444444444444444444444432221000
Q ss_pred hhhhhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEee
Q 008792 260 AEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQ 339 (553)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (553)
..++....+ ...++++.++..+.+.+...+|+.....+...+...
T Consensus 252 ---------------~~~f~~si~--------------------~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~s 296 (480)
T KOG2563|consen 252 ---------------DASFPKSIK--------------------SCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPS 296 (480)
T ss_pred ---------------cCcHHHHHH--------------------HHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccc
Confidence 000110000 011222333333334444444444443322111111
Q ss_pred ecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008792 340 GNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRL 419 (553)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~ 419 (553)
. +. +...+.. +...++.+.+...+...+.+|..+ ++ ..+.+.......+.+.+.....
T Consensus 297 g------Y~---~~~aG~i----g~l~iv~Gmlga~~~gii~Dktk~----fk--~~~~v~~~~~~v~~~~l~~~t~--- 354 (480)
T KOG2563|consen 297 G------YE---GVFAGYI----GALMIVAGMLGALASGIIADKTKK----FK--LTTLVLYLFALVGTLMLLTCTL--- 354 (480)
T ss_pred c------CC---ccccchh----HHHHHHHHHHHHHHHHhhhhhhhh----HH--HHHHHHHHHHHHHHHHHHHhhc---
Confidence 1 00 0112222 233333333333333334555321 11 2222222223333222222211
Q ss_pred HHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhcccc
Q 008792 420 REVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDF 499 (553)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~ 499 (553)
.....+++.....+.|.++....|+..++..|.+=+..-++..|+.+....+=+.+=..+.+...+.
T Consensus 355 -------------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~ 421 (480)
T KOG2563|consen 355 -------------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAED 421 (480)
T ss_pred -------------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence 1123455666678888888888999999999988888888999988865444444444444433322
Q ss_pred ccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 008792 500 STRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKLVV 550 (553)
Q Consensus 500 ~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~~~ 550 (553)
.+ ..+|. ...-+..+..+++.+++..++++.+++++.|+
T Consensus 422 ~~---~~~~~---------~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~ 460 (480)
T KOG2563|consen 422 LG---PPGNT---------FPANIFLTVSALLGAILVAFFRPDYRRLRAEA 460 (480)
T ss_pred cC---CCCCC---------ccchhHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence 11 11221 11236667777777777788887776665553
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=131.02 Aligned_cols=177 Identities=12% Similarity=0.011 Sum_probs=121.9
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccch--HHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGR--YWTIASFSIIYV 108 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--~~~~~~~~~~~~ 108 (553)
.+|......++....++++..++|.|+.+++|++..+.+...+.+.++..++.+++|+++||+.+| ++......+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 456666666677777778888999999888999999999999999999999999999999998222 222222222212
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
+........ +. .+........+..|++.............|.+|+++ |+++.++.+
T Consensus 324 ~~~~~~~~~---~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~ 379 (434)
T PRK11663 324 LSVGSLWLM---PF---------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVG 379 (434)
T ss_pred HHHHHHHHc---cc---------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHH
Confidence 222111111 11 112222233333443322222223455678888877 999999999
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
+..++|..++|.+.|++.+..||+..|++.+++.+++.+....
T Consensus 380 ~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 380 LFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887776666554443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=127.96 Aligned_cols=177 Identities=14% Similarity=0.010 Sum_probs=131.1
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHH-HHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIA-SFSIIYV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~ 108 (553)
|.++......++....+++...++|.|++ ++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 34566667777888888888999999985 5899999999988899999999999999999999 9888764 3333333
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++...+........ .+.+..++..++.|++.+...+. .+...|..| ++ |++++++.+
T Consensus 300 ~~~~~l~~~~~~~~---------------~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~~~g~~~ 356 (402)
T TIGR00897 300 IFTLALYYIPQHFG---------------HSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGAAMSVLN 356 (402)
T ss_pred HHHHHHHHHHHccC---------------CcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHHHHHHHH
Confidence 33333222210000 23555566677778777765543 455566544 45 999999999
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
...++|..++|.++|.+.+..||...|++.+++.+++.+...+
T Consensus 357 ~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 357 LSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888777666555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=5e-12 Score=110.92 Aligned_cols=134 Identities=16% Similarity=0.232 Sum_probs=114.0
Q ss_pred HHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHh
Q 008792 72 VTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIA 151 (553)
Q Consensus 72 ~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 151 (553)
.+.+.++..++.++.|+++||+ |||+.+..+.....++....... .+.+.+.+.+++.|
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g 62 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS--------------------SNITVLIIARFLQG 62 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHH
Confidence 3456678889999999999999 99999999988888887777655 24677888899999
Q ss_pred hcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 152 LGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
++.+...+...+++.|.+|+++ |++..++.+...++|..++|.+.+++.+..+|++.|++.....++.....+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 63 FGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988 9999999999999999999999999998889999988877666666555444
Q ss_pred c
Q 008792 232 G 232 (553)
Q Consensus 232 ~ 232 (553)
.
T Consensus 137 ~ 137 (141)
T TIGR00880 137 L 137 (141)
T ss_pred c
Confidence 3
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=125.39 Aligned_cols=161 Identities=12% Similarity=0.126 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh
Q 008792 39 ECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSA 118 (553)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~ 118 (553)
.+.....+.....++|.|+++ .|.++.+.+...+...++..++.++.|+++||+ |||+.+..+.....++..... .
T Consensus 209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~- 284 (381)
T PRK03633 209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-
Confidence 333334444455678888865 699999999999999999999999999999999 999999888777766654432 1
Q ss_pred cccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHh
Q 008792 119 SVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVA 198 (553)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 198 (553)
.......+++.|++.+...|...+...|..|+++ ++...+.++...++|..+|
T Consensus 285 ---------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~ig 337 (381)
T PRK03633 285 ---------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLG 337 (381)
T ss_pred ---------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 1112345566777777778888888899988776 7777888888899999999
Q ss_pred hhhheeecccccchhhhHHHHHHHHHHHHHHH
Q 008792 199 ASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 199 ~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
|.++|++.++.+|++.|.+.+.+.++.....+
T Consensus 338 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 338 PSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877766665544433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=131.88 Aligned_cols=178 Identities=15% Similarity=0.062 Sum_probs=124.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccch--HHHH-HHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGR--YWTI-ASFSII 106 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--~~~~-~~~~~~ 106 (553)
+.+|...+..++.....+++..++|.|+++..|++..+++.....+.++..++.+++|+++||+ ++ |+.. .....+
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l 331 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 331 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence 4467777777777888888899999999998999999999888888899999999999999998 43 3322 222223
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
..++.....+. +. .+.....+..++.|.+.....+...++..|.+|++. |++++++
T Consensus 332 ~~~~~~~~~~~---~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 387 (452)
T PRK11273 332 VTIATIVYWLN---PA---------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF 387 (452)
T ss_pred HHHHHHHHHHh---cc---------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHH
Confidence 33333322221 10 123333344444444332222233455679999988 9999999
Q ss_pred HHHHHHHHHHH-hhhhheeecccccchhhhHHHHHHHHHHHHHHHhc
Q 008792 187 FYFSINIGALV-AASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 187 ~~~~~~~G~~~-~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
.+...++|+.+ +|.+.|++.+..||+..|++.++..+++++.....
T Consensus 388 ~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 388 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99888888655 79999999999999999988877766666555433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=117.58 Aligned_cols=345 Identities=14% Similarity=0.049 Sum_probs=189.2
Q ss_pred HHHHHHHhhhhcCC---chh----hhhhHHHHHHHHHhhhhhhHHHHhhhccchHH-HHHHHHHHHHHHHHHHHhhhccc
Q 008792 50 NTNLVNYLRFELNQ---GNV----QAVNNVTNWSGTCYVMPLIGAFLADAYLGRYW-TIASFSIIYVIGMTILTMSASVH 121 (553)
Q Consensus 50 ~~~l~~yl~~~l~~---s~~----~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-~~~~~~~~~~i~~~~~~~~~~~~ 121 (553)
...+|+|+++..+. ++. ..+...++..+..++..|+-|.++|.. |+|| .+-...++..+....+... +
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i---~ 110 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFI---P 110 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHh---C
Confidence 45678888776544 332 335567778888899999999999999 7555 4445555666666666655 1
Q ss_pred CCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhh
Q 008792 122 GLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASC 201 (553)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i 201 (553)
. ..+++...+...+..++........++++.|..++++ .++.-+.-+...++|+.+.-++
T Consensus 111 ~--------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~li~ 170 (438)
T COG2270 111 P--------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVILLIF 170 (438)
T ss_pred C--------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHHHHH
Confidence 1 1356667777778889999888899999999999887 3334333333344444433222
Q ss_pred h----------ee-ec-------ccccchhhhHHHHHHHHHHHHHHHhccceeeccC-CCCChHHHHHHhhhhhccchhh
Q 008792 202 L----------VW-IQ-------TNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQK-PGGSPLTRICQSLLYETADAEF 262 (553)
Q Consensus 202 ~----------g~-l~-------~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 262 (553)
+ +. .. +..+-|..+.++++-.++..+-.++..++.++.. |.........+.+....++.
T Consensus 171 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i-- 248 (438)
T COG2270 171 VVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEI-- 248 (438)
T ss_pred HHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHH--
Confidence 1 11 11 2344666676666666655555555444333221 21111111122111111110
Q ss_pred hhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecc
Q 008792 263 AVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNT 342 (553)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (553)
+.++.+.+ ++..-+++. ....+.+..-..+
T Consensus 249 --------------------------------------------~~~~~i~~----FLiA~~~~~--DGv~til~~~~~f 278 (438)
T COG2270 249 --------------------------------------------RGRKNLVL----FLIARFFYI--DGVNTILAMGGVF 278 (438)
T ss_pred --------------------------------------------hcccchHH----HHHHHHHHH--hhHHHHHHHHHHH
Confidence 11111111 111111000 0000000000000
Q ss_pred cCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008792 343 MDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREV 422 (553)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~ 422 (553)
....++ ++...+.. ..+...+...+...+..++.+|++ .++.+..++++..+..+...+..
T Consensus 279 g~~~~g----ls~~~lll-~g~~~~vvA~lg~ii~g~Ld~rfg-------~k~vl~~~lvi~~~~~~~~~~~~------- 339 (438)
T COG2270 279 GAADLG----LSSTELLL-IGIALSVVAALGAIIAGFLDERFG-------SKPVLMIGLVILSIAALYLIFLE------- 339 (438)
T ss_pred HHHHcC----ccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC-------CceeehHHHHHHHHHHHHHHHcc-------
Confidence 000011 10000000 111122223333333334566644 33667777777666655554432
Q ss_pred hhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccC
Q 008792 423 KKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTR 502 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~ 502 (553)
....+.+.-.+.|+..+......-++..+.+|++..+...|++++....+..+||.+.+.+.+.++.
T Consensus 340 -------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 340 -------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred -------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 1122233346777888888888899999999999999999999999999999999999999887654
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-10 Score=124.25 Aligned_cols=202 Identities=14% Similarity=0.197 Sum_probs=150.3
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.+..++....+......+++....+-+.+.++++..+.|++.+.+-+++.+...+-.+.+-|. -|-|.+-++.+++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence 4444444444444444447777777888899999999999999999999999999999999998 777788899999999
Q ss_pred HHHHHHhhhcccCCC---------CCCCC------------CCCcCC----------Cc-hhHHHHHHHHHHHhhccccc
Q 008792 110 GMTILTMSASVHGLK---------PLCDK------------RNVCHP----------TG-LQIAVFFVGLYLIALGTGGI 157 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~---------~~~~~------------~~~~~~----------~~-~~~~~~~~~~~l~g~~~~~~ 157 (553)
+.++.++.+.+..-+ +.++. -+.|++ +. ..+..++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 999998774221100 00000 123333 11 12346788999999999999
Q ss_pred ccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccc-------------------cchhhhHHH
Q 008792 158 KPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNV-------------------GWGWGFGIP 218 (553)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~-------------------~~~~~f~i~ 218 (553)
+|...+|+=|...+++ -...+|+.+.+..+|.++|-++++++...+ -|+..|.+.
T Consensus 255 ~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC 328 (735)
T ss_pred ccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence 9999999999998887 788999999999999999988888764311 167777788
Q ss_pred HHHHHHHHHHHHhccceeec
Q 008792 219 AVAMAIAVVSFFAGSRLYRY 238 (553)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~ 238 (553)
+.+.++..+.++.+.++.++
T Consensus 329 g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 329 GALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHHHHHhCcccCcc
Confidence 87777777777776665543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=131.57 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=115.4
Q ss_pred HhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008792 48 GINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLC 127 (553)
Q Consensus 48 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (553)
.+..++|.|+++++|.+..+.+++.+...++..++.+++|+++||+ |||+++..+.++..+..++.... +.
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~---~~----- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAI---GG----- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhc---cc-----
Confidence 4567899999889999999999999999999999999999999999 99999888776655554433322 11
Q ss_pred CCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecc
Q 008792 128 DKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQT 207 (553)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~ 207 (553)
.+.+......++.+.......+..++++.|.+|+++ |++.+++++...++|..+||.++|++.+
T Consensus 364 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~ 427 (496)
T PRK03893 364 ----------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQ 427 (496)
T ss_pred ----------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence 223333344444333333345666788899999887 9999999999999999999999999999
Q ss_pred cccchhhhHHHHHH
Q 008792 208 NVGWGWGFGIPAVA 221 (553)
Q Consensus 208 ~~~~~~~f~i~~~~ 221 (553)
.+||+..+.+.+..
T Consensus 428 ~~g~~~~~~~~~~~ 441 (496)
T PRK03893 428 RLDLGTALASLSFS 441 (496)
T ss_pred cCChHHHHHHHHHH
Confidence 99999877654433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=130.34 Aligned_cols=163 Identities=9% Similarity=-0.105 Sum_probs=131.6
Q ss_pred HHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008792 46 YYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKP 125 (553)
Q Consensus 46 ~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 125 (553)
..++..++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+.++.+++..+..+.
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM-------- 309 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence 345677889999888999999999999999999999999999999997 88888888877777776666544
Q ss_pred CCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheee
Q 008792 126 LCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWI 205 (553)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l 205 (553)
.+.+...+..++.|++.+...+...+++.|.+|++. |++++++++...++|..+||.+.|++
T Consensus 310 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l 371 (417)
T PRK10489 310 ------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGL 371 (417)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence 235556677778888888777777888999999877 99999999999999999999999999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhccce
Q 008792 206 QTNVGWGWGFGIPAVAMAIAVVSFFAGSRL 235 (553)
Q Consensus 206 ~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 235 (553)
.+..|++..+.+.++..++..++.....++
T Consensus 372 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 372 GAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 999998888876665555444444443333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-11 Score=127.38 Aligned_cols=164 Identities=14% Similarity=0.142 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008792 38 NECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMS 117 (553)
Q Consensus 38 ~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~ 117 (553)
..++.......+..+.+.|+++ .+.+ +.+.....+.++..++.++.|++.||+ ||||.+..+..+..++..+....
T Consensus 224 ~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 299 (392)
T PRK12382 224 GLALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA 299 (392)
T ss_pred HHHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc
Confidence 3344455566667778888764 4554 345566667778889999999999999 99999999888888877766654
Q ss_pred hcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHH
Q 008792 118 ASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALV 197 (553)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~ 197 (553)
.+.+.+++..++.|++.+...|...+...|.+|+++ |++++++++...++|..+
T Consensus 300 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 300 --------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGV 353 (392)
T ss_pred --------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHH
Confidence 235566778888999998888888888889998887 999999999999999999
Q ss_pred hhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 198 AASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 198 ~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
+|.+.|++.+..||+..|.+.+++.+++....+.
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888777777665544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-11 Score=123.71 Aligned_cols=174 Identities=9% Similarity=-0.101 Sum_probs=133.6
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGM 111 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 111 (553)
++......++.....++...++++|+.+.+|.|..+.+++.+...++..++.++.|+++||+ |||+.. .+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence 44445555566666666777888898888999999999999999999999999999999999 887654 4444444443
Q ss_pred HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHH
Q 008792 112 TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSI 191 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 191 (553)
...... + .+.+.+.+..++.|++.+...+...+.+.+..| ++ |++++++++...
T Consensus 285 ~~l~~~---~----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~ 338 (390)
T PRK03545 285 LLLLPA---A----------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGIF 338 (390)
T ss_pred HHHHHH---h----------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHHH
Confidence 333211 0 235666777888888887777777777777766 45 889999999999
Q ss_pred HHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhcc
Q 008792 192 NIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGS 233 (553)
Q Consensus 192 ~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~ 233 (553)
++|..+||.++|++.+..|++..|++.+.+.+++++......
T Consensus 339 ~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 339 NIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999988888777776655544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=129.33 Aligned_cols=171 Identities=9% Similarity=-0.025 Sum_probs=135.1
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc-cchHHHHHHHH--HH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY-LGRYWTIASFS--II 106 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Gr~~~~~~~~--~~ 106 (553)
+.++..+...++...+++....+++.|+.+ +|.+..+.+.+.+...++..++.+++|+++||. .++|+...++. +.
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 446666677777778888888889999865 799999999999999999999999999999984 14444443332 22
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
..++.+++... .+.+.+++.+++.|++.+...+...+++.|.+|+++ +++.+++
T Consensus 320 ~~l~~ll~~~~--------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~ 373 (455)
T TIGR00892 320 NGLTHLLCALA--------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGL 373 (455)
T ss_pred HHHHHHHHHHh--------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhH
Confidence 23333333333 246667888999999999999999999999999887 9999999
Q ss_pred HHHHHHHHHHHhhhhheeecccc-cchhhhHHHHHHHHHHHH
Q 008792 187 FYFSINIGALVAASCLVWIQTNV-GWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~-~~~~~f~i~~~~~~~~~~ 227 (553)
++...++|..+||.++|.+.+.. +|++.|++.+++.+++.+
T Consensus 374 ~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 374 VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999877 599999988876666554
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-13 Score=143.62 Aligned_cols=189 Identities=13% Similarity=0.157 Sum_probs=3.0
Q ss_pred HHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 008792 44 LAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGL 123 (553)
Q Consensus 44 ~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~ 123 (553)
....++.....+-++..++++..++|++.+.+-++..+..++-.++++|. .|=|.+-++.+++++++++.++.+-+..-
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~ 94 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGP 94 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence 66667777777778999999999999999999999999999999999997 77777888999999999999887543322
Q ss_pred C----------------CCC-----------CCCCCcCC---CchhHHHHHHHHHHHhhcccccccccccccccCCCCCc
Q 008792 124 K----------------PLC-----------DKRNVCHP---TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYD 173 (553)
Q Consensus 124 ~----------------~~~-----------~~~~~~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 173 (553)
+ ..| ++...|.+ ....+..++++.++.|+|....++...+|+=|.+++++
T Consensus 95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~ 174 (539)
T PF03137_consen 95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN 174 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence 1 123 00011111 11235778899999999999999999999999999988
Q ss_pred hHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccc----------------------cchhhhHHHHHHHHHHHHHHHh
Q 008792 174 EAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNV----------------------GWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 174 ~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~----------------------~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
-+.++|+.+.+..+|.++|-.+++.+...+ .|...|.+.+++.++..+.++.
T Consensus 175 ------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 175 ------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888999999999999999988888764211 2666676676666666666666
Q ss_pred ccceeecc
Q 008792 232 GSRLYRYQ 239 (553)
Q Consensus 232 ~~~~~~~~ 239 (553)
+.|+.+++
T Consensus 249 FPk~lp~~ 256 (539)
T PF03137_consen 249 FPKKLPGT 256 (539)
T ss_dssp --------
T ss_pred CCccCCCc
Confidence 66665544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=129.03 Aligned_cols=154 Identities=11% Similarity=0.090 Sum_probs=111.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH-H
Q 008792 35 ILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMT-I 113 (553)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~-~ 113 (553)
.+...++....++++..++|.|+++.+|++..+.++......++..++.+++|+++||+ |||+.++.+.+...+... .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~ 321 (434)
T PRK15075 243 GMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPA 321 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHH
Confidence 34444556677788889999999988999999999888888899999999999999999 999988776544332221 1
Q ss_pred HHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH-HHHHH
Q 008792 114 LTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF-YFSIN 192 (553)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ 192 (553)
..... .. .+........++.+++.+...+....+..|.+|++. |++++++. +++..
T Consensus 322 ~~~~~--~~---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~ 378 (434)
T PRK15075 322 LSWLV--AA---------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATA 378 (434)
T ss_pred HHHHH--cC---------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHH
Confidence 11110 00 123233333444556666666666788899999998 99999984 44444
Q ss_pred HHHHHhhhhheeecccccch
Q 008792 193 IGALVAASCLVWIQTNVGWG 212 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~~~~ 212 (553)
+++.++|.+.|++.+..|++
T Consensus 379 ~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 379 IFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHhhhHHHHHHHHHHhcCCc
Confidence 56788999999999988864
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=128.50 Aligned_cols=179 Identities=10% Similarity=0.010 Sum_probs=131.3
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHH-HHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVT-NWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
.|......++.....+....+.++|+.+.+|++..+.+.... ...++..++.+++|+++||+ |||+.+.++.++..+.
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 444555556666666667778889988889999999999874 55679999999999999999 9998887766655554
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
.+......... .+...+....++..++.|...+...++..+..+++. +++.+++.+..
T Consensus 303 ~l~~~~l~~~~----------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~ 360 (491)
T PRK11010 303 NAGYWLLSITD----------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSAL 360 (491)
T ss_pred HHHHHHHHhcc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHH
Confidence 43322110000 123334445555555555555666788888999888 88899999999
Q ss_pred HHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhcc
Q 008792 191 INIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGS 233 (553)
Q Consensus 191 ~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~ 233 (553)
.++|..+++.+.|++.+..||+..|.+.+++.++++......+
T Consensus 361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888999999999999999888887777766655543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-11 Score=124.74 Aligned_cols=158 Identities=17% Similarity=0.134 Sum_probs=123.2
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008792 34 YILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTI 113 (553)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~ 113 (553)
.......+.+........++|.|+.+++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.+...+....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 320 (405)
T TIGR00891 242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIP 320 (405)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHH
Confidence 334444455566667778899999999999999999999999999999999999999999 9999988876654332222
Q ss_pred HHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHH
Q 008792 114 LTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINI 193 (553)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 193 (553)
.... . .+.+.+.+..++.+++.+...+..++++.|.+|+++ |++++|+.+...++
T Consensus 321 ~~~~---~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~ 375 (405)
T TIGR00891 321 VFAI---G----------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNL 375 (405)
T ss_pred HHHh---C----------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHH
Confidence 2111 0 234445555566666666677778889999999988 99999999999999
Q ss_pred HHHHhhhhheeeccccc-chhhhHH
Q 008792 194 GALVAASCLVWIQTNVG-WGWGFGI 217 (553)
Q Consensus 194 G~~~~~~i~g~l~~~~~-~~~~f~i 217 (553)
|..++|.+.|++.+..| |+..+..
T Consensus 376 g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 376 GGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHhccccchhHHh
Confidence 99999999999999888 8766543
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-11 Score=119.40 Aligned_cols=183 Identities=14% Similarity=0.036 Sum_probs=141.9
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
.|..|.+....+....++.++..++|.|++++++.+..+++.....+.+...+..+.+|+|+||+ |.+|++....+.++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999 98888888888888
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++..+..+..+... +..+...++...+..++..|.-+..+..++...+|++ -+...|+..
T Consensus 296 ~~~~~l~~~~~~~~-------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vg 355 (417)
T COG2223 296 LAAALLSLFLTGFG-------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVG 355 (417)
T ss_pred HHHHHHHccccccc-------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHH
Confidence 88888776521010 1123333333333444444444445567777777763 678889999
Q ss_pred HHHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHHHHHhc
Q 008792 189 FSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
...++|+..=|...|...+..| ++.+|++-....+++.+..+..
T Consensus 356 a~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 356 AIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888887777 8888887777777776655443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=122.86 Aligned_cols=183 Identities=17% Similarity=0.094 Sum_probs=152.2
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchH--HHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRY--WTIASFSII 106 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~--~~~~~~~~~ 106 (553)
.|.++..++..++.+-+...+......|.++++|++..+...+.....+...++.++.|++.||+ |.| ++++++++.
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 45677888888988999999999999999999999999999999999999999999999999999 988 888888776
Q ss_pred HHHHHHHHHh--hhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhH
Q 008792 107 YVIGMTILTM--SASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFF 184 (553)
Q Consensus 107 ~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (553)
+.+..+...+ ..+... ..+.+.+++.-++.|+..|..++..-++.+++.|+++ .+..|
T Consensus 359 ~~~i~~~g~~G~~~~~~g--------------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efF 418 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPSFFG--------------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFF 418 (477)
T ss_pred HHHHHHHHHHHhhhcccC--------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHH
Confidence 6444443333 111000 1346678888889999999999999999999999998 89999
Q ss_pred HHHHHHHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHHHHHhc
Q 008792 185 NWFYFSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
|++.+.....+.+||.+.|.+.+.+| .|+.+....++.++++++++..
T Consensus 419 gly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 419 GLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988876 8888877777777777666443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-10 Score=113.31 Aligned_cols=83 Identities=13% Similarity=-0.007 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccc---------
Q 008792 138 LQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTN--------- 208 (553)
Q Consensus 138 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~--------- 208 (553)
.+++.++++.++.|.|.+..++..+++++++.++++ +.+.+++.+....+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 468889999999999999999999999999999887 88899999999999999999999977632
Q ss_pred -------ccchhhhHHHHHHHHHHH
Q 008792 209 -------VGWGWGFGIPAVAMAIAV 226 (553)
Q Consensus 209 -------~~~~~~f~i~~~~~~~~~ 226 (553)
.+|++++++.+.+.++..
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~ 106 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLA 106 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 368888875554444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=122.69 Aligned_cols=169 Identities=12% Similarity=-0.016 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHh-h
Q 008792 39 ECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTM-S 117 (553)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~-~ 117 (553)
.++....+|++..++|.|+.+.+|.+..+.+...+.......++.++.|+++||+ |||+.+.++.++..+....... .
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344777888999999999998999998988888888888888999999999999 9999887765543333322211 1
Q ss_pred hcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH-HHHH
Q 008792 118 ASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN-IGAL 196 (553)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~G~~ 196 (553)
.. . .+....+....+.+.+.+...+..+++..|.+|++. |++++|+.+...+ +++.
T Consensus 331 ~~-~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~ 387 (432)
T PRK10406 331 QN-V----------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGG 387 (432)
T ss_pred Hc-C----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHh
Confidence 00 0 112211111122222233333456678899999998 9999999665544 4455
Q ss_pred HhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 197 VAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 197 ~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
.+|.+.+++.....|...+++.++..+++.+..+.
T Consensus 388 ~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 388 SAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 58888886643333555555555555555444443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=121.77 Aligned_cols=170 Identities=11% Similarity=-0.008 Sum_probs=120.5
Q ss_pred HhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008792 48 GINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLC 127 (553)
Q Consensus 48 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (553)
.+..+.+ ++.+++|.+..+.++......++..++.+++|+++||+ |||+.+..+.++..++.++..+........
T Consensus 302 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 376 (481)
T TIGR00879 302 AIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVTG--- 376 (481)
T ss_pred ehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccCC---
Confidence 3344444 44567899988888888888999999999999999999 999999998888777777666321101100
Q ss_pred CCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecc
Q 008792 128 DKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQT 207 (553)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~ 207 (553)
++...+...+....++.+.......+....+..|.+|+++ |+++.++.+...++|.+++|.+.+.+.+
T Consensus 377 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 377 ------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred ------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000122222222233222223344666778899999988 9999999999999999999999999988
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 208 NVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 208 ~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
..+|++.|++.+++.+++.+..+...+
T Consensus 445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 445 SIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred hcCccceehhHHHHHHHHHHHHheecc
Confidence 889999998887776666665554433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-11 Score=122.09 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=119.3
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHH--HH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI--IY 107 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~--~~ 107 (553)
+.++...+..++.......+..+.|.|+.+.+|.+..+.+...+...++..++.++.|+++||..+||+....... ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4466667777777777788889999999999999999999999999999999999999999986234433322211 11
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
.++....... +. .+.....+..++.|+......+....+..|.+|+++ |+++.++.
T Consensus 296 ~~~~~~~~~~---~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 351 (379)
T TIGR00881 296 IVSLLVYWLN---PA---------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFV 351 (379)
T ss_pred HHHHHHHhcC---cc---------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHH
Confidence 1111111111 11 233444555566666555555566678899999988 99999999
Q ss_pred HHHHHHHHHHhhhhheeecccccchhhh
Q 008792 188 YFSINIGALVAASCLVWIQTNVGWGWGF 215 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~~~~~~f 215 (553)
+...++|..++|.+.|.+.+..||++.|
T Consensus 352 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 352 GFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 9999999999999999999999998765
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-09 Score=111.64 Aligned_cols=321 Identities=13% Similarity=0.060 Sum_probs=190.5
Q ss_pred HHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhccc
Q 008792 76 SGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTG 155 (553)
Q Consensus 76 ~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 155 (553)
.+...+.+++-|.++||+ |||..+....+...+..+.+.+. .+++++ ..=..-+.+
T Consensus 72 ~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~----------------------~~~~~~-~~~l~g~~~ 127 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ----------------------GYWFFL-LLGLSGGFS 127 (463)
T ss_pred HHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH----------------------HHHHhh-hcccccchh
Confidence 567888999999999999 99999999988877777777655 122323 111223444
Q ss_pred ccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccce
Q 008792 156 GIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRL 235 (553)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 235 (553)
.......++++|....++ |...+++.+.....+..++|.+++.+.+..|...+|.++.+..++..+..+...|+
T Consensus 128 ~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 128 AIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred hhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 555677899999999887 99999999999999999999999999999999999999999888888877766655
Q ss_pred eeccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhH
Q 008792 236 YRYQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRL 315 (553)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (553)
..+++...+. ...+...+....+. ..+.++.... ...+++.+...
T Consensus 202 sl~~~~~~~~--------------------~~~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~r~~l~l~ 246 (463)
T KOG2816|consen 202 SLQEKERSDA--------------------TLRELTPGSLDSSH--------------VADAFQSLTK-VGPDRLLLLLL 246 (463)
T ss_pred ccCccccccc--------------------cccccCCCcccchh--------------hhhhhhhhcc-cCCCccchHHH
Confidence 4332211100 00000000000000 0000000000 00112222111
Q ss_pred HHHHHHHHHHHHhhccccceEEeeecccCcCCCCCccc-ccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChh
Q 008792 316 LPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEI-PSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQL 394 (553)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~ 394 (553)
+...+.... -........ ..++....+ ++- ..+.+.........+.+.+.-.. +.+.+ ...
T Consensus 247 l~~~~~~~~---~~~~~~~~~---~~yl~~~f~--w~~~~~s~~~~~~~~~~~i~~l~~~~~---l~~~l-------~~~ 308 (463)
T KOG2816|consen 247 LVAFLSSLP---EAGGASDVL---LLYLKAKFG--WNKKEFSDLLSLVSILGIISQLLLLPL---LSSIL-------GEK 308 (463)
T ss_pred HHHHHHHHH---HhcCceeEE---EEEEeeecC--cCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-------hhh
Confidence 111111111 111111000 111222221 111 11112222222222222221111 22222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHH
Q 008792 395 QRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLC 474 (553)
Q Consensus 395 ~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~ 474 (553)
+.+..|+....+.....++.+ . .|.+..............|...+++..+..++.+|++
T Consensus 309 ~~i~lGl~~~~~~~~~~af~~--------------------~-~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v 367 (463)
T KOG2816|consen 309 RLISLGLLSEFLQLLLFAFAT--------------------E-TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKV 367 (463)
T ss_pred hHhhHHHHHHHHHHHHHHHhc--------------------c-chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccch
Confidence 468889999999999998863 2 2444444555566677888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHhhhhccccc
Q 008792 475 SALSLTTAALGNYLSTLLVNIVTDFS 500 (553)
Q Consensus 475 ~g~~~~~~~lg~~ig~~l~~~i~~~~ 500 (553)
.++...+..+.+.+++.+.+.+...+
T Consensus 368 ~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 368 FGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999998775543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-10 Score=119.08 Aligned_cols=174 Identities=11% Similarity=-0.130 Sum_probs=129.3
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
.++......++.....+......|.|+.+.+|.++.+.+.......++..++.++.|+++||+ |+|+.+.++.+...++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g 294 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 355555555566666666667788888888999999999887777788889999999999999 9999999988877777
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
..+......... .+.+.++++.++.|++.+...+......... ++++ |++..+.+++.
T Consensus 295 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~~~ 352 (406)
T PRK15402 295 LLLAALATVISS---------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMGML 352 (406)
T ss_pred HHHHHHHHHccc---------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHHHH
Confidence 776665421111 2355567778888999888777665544333 3355 99999999999
Q ss_pred HHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHH
Q 008792 191 INIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 191 ~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~ 227 (553)
..+|..+|+.+++++.+..++....+..++..++.+.
T Consensus 353 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 353 SMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999998877766554444444444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-10 Score=114.88 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=145.8
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+.++......++...+.+...+++.+++++..|+|....++++..+.++..++.+++|+++|| +.|+.+.....+.++
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999999999999999999999999 688888887777777
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
....+.+.. .+.+..++..++.|+.........+.-.++..| +. +..+.+++..
T Consensus 289 ~~l~l~~~~-------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~------~~~a~sl~~a 342 (394)
T COG2814 289 ALLALTFTG-------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAP-DA------ADLAGSLNVA 342 (394)
T ss_pred HHHHHHHhc-------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-Cc------hHHHHHHHHH
Confidence 776666541 234555666666777777555444555555333 34 7889999999
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhcccee
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLY 236 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 236 (553)
..|+|..+|..++|.+.++.|+....++.+++.++++...++..++.
T Consensus 343 a~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 343 AFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999998888887776655443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-10 Score=107.55 Aligned_cols=164 Identities=12% Similarity=0.070 Sum_probs=133.8
Q ss_pred CCCCCcccCCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchH
Q 008792 18 NKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRY 97 (553)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~ 97 (553)
+.|...........+|.+..+.++...+.+-+...-|.+.++.+|+|+..++.+.+...+...+.+|+.|.++||+ ||+
T Consensus 252 e~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n 330 (459)
T KOG4686|consen 252 EEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFN 330 (459)
T ss_pred CCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cce
Confidence 3444444455667789999999999998888888889999999999999999999999999999999999999999 998
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHh
Q 008792 98 WTIASFSIIYVIGM-TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAE 176 (553)
Q Consensus 98 ~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (553)
-..+.+..+..+.. ..+.+. .+.-+++..+.|+.......+.+..++-..|+++
T Consensus 331 ~~wv~~a~~~tl~~H~~l~Ft----------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q--- 385 (459)
T KOG4686|consen 331 LWWVASACILTLLGHSGLFFT----------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ--- 385 (459)
T ss_pred ehhHHHHHHHHHHHhhhHHhh----------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH---
Confidence 87776655433333 333333 2224566778888888877778888999999988
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhhhheeeccccc
Q 008792 177 KKKKSSFFNWFYFSINIGALVAASCLVWIQTNVG 210 (553)
Q Consensus 177 ~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~ 210 (553)
.|++++..+...|+|-.+-|++.|.+.+.-|
T Consensus 386 ---LGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 386 ---LGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred ---hcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 9999999999999999999999999988654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.6e-11 Score=124.98 Aligned_cols=180 Identities=13% Similarity=0.030 Sum_probs=122.8
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+.+|......++.....+++..++|.|+++..|+++.+.++......+...++.+++|+++||+ ++++....+.....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL 329 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence 3456666666777777788889999999998999999999999999999999999999999999 754433333322221
Q ss_pred H---HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 110 G---MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 110 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
. ....... +. .+.+......++.|++.............|.+|+++ |+++.++
T Consensus 330 ~~~~~~~~~~~---~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~ 385 (438)
T TIGR00712 330 VTIAVIVYWMN---PA---------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF 385 (438)
T ss_pred HHHHHHHHHhc---CC---------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhh
Confidence 1 1111111 10 122223333344444332222222345678899887 9999999
Q ss_pred HHHHHHHHH-HHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 187 FYFSINIGA-LVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 187 ~~~~~~~G~-~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
.+...++|+ .++|.+.|.+.+..||...|++.++..+++.+..+...+
T Consensus 386 ~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 386 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 988888874 689999999999899999998777766666665554433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=121.21 Aligned_cols=172 Identities=8% Similarity=-0.052 Sum_probs=115.2
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHH-----H--HHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYW-----T--IASFS 104 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-----~--~~~~~ 104 (553)
.|...+..++.....+.+..++|.|+.+++|++..+++...+...++..++.+++|+++||+ |||+ . ..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 45555555555555566778899999888999999999999999999999999999999999 8752 2 22222
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhH
Q 008792 105 IIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFF 184 (553)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (553)
++..+...+.... .+.+...+..++.+++.+...+...++..+..| +. |++..
T Consensus 333 ~l~~i~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~ 385 (476)
T PLN00028 333 TLGGVFCIWLGRA--------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVIS 385 (476)
T ss_pred HHHHHHHHHhccc--------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhh
Confidence 2222222222211 123334444455555555444555566666554 34 89999
Q ss_pred HHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhc
Q 008792 185 NWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
++.+...++|+.++|.+.+ .....+|+..|++.+++.+++.++.++.
T Consensus 386 g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 386 GLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 9988888888888877654 2234569999988887777776665554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.6e-09 Score=108.77 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=117.3
Q ss_pred HHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc--cc--hHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008792 52 NLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY--LG--RYWTIASFSIIYVIGMTILTMSASVHGLKPLC 127 (553)
Q Consensus 52 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G--r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (553)
...+|+++++|+++.+.....+... .-...-|+.|.++|.+ .| ||+-++++.++..++...+++...
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~-lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~-------- 81 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLAS-LPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA-------- 81 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHh-CchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc--------
Confidence 3456789999999998876655433 3346678899999998 22 444555566555555555554311
Q ss_pred CCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecc
Q 008792 128 DKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQT 207 (553)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~ 207 (553)
...+.....+..++..+|.......+.++..|...++.+. |+...+..+....+|..++..++|.+.+
T Consensus 82 --------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 82 --------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred --------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 1123455566677788999999999999999998766533 7888888888999999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 208 NVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 208 ~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
..+++..|.+.++..++..+..+...+
T Consensus 150 ~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 150 SFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred cCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 999999999888776666554444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-10 Score=117.17 Aligned_cols=167 Identities=8% Similarity=-0.093 Sum_probs=130.8
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.++......++....+......++.|+. +.|.++.+.+...+...++..+..++.|++.||+ |+|+.+..+.+..++
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence 45566666667777777677788888985 5899999999998988889999999999999999 999999998888888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH-
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY- 188 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~- 188 (553)
+..+.+.. .+.+.+++..++.|++.+...+....+..+. ++++ +++..+.++
T Consensus 283 ~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~ 335 (382)
T PRK11128 283 RWGLMGST--------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSA 335 (382)
T ss_pred HHHHHHhh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHH
Confidence 77666554 3477778889999999998888888877775 4444 677788765
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHH
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAV 226 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~ 226 (553)
.....|..+||.++|.+.+..|+. .++..+++.++++
T Consensus 336 ~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 336 LAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 556778899999999999988874 5555555544443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=121.20 Aligned_cols=158 Identities=9% Similarity=-0.003 Sum_probs=125.6
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.+...+...++...++.....+.|.|++..+|.++.+.++......++..++.++.|+++||+ |||+++..+..+..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4455666667777777666666788888888999999999998888888888899999999999 999999988887777
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+..+...... . .+.+.+.+..++.|++.+...+..+++..+.+|+++ ++.++++.++
T Consensus 340 ~~~~~~~~~~--~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 396 (471)
T PRK10504 340 VSLLFMLVAL--L---------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSM 396 (471)
T ss_pred HHHHHHhccc--c---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHH
Confidence 7666554311 1 123334455667788888888888888899999887 9999999999
Q ss_pred HHHHHHHHhhhhheeecccccc
Q 008792 190 SINIGALVAASCLVWIQTNVGW 211 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~ 211 (553)
...+|..+|+.++|.+.+..++
T Consensus 397 ~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 397 IMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988766555
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-10 Score=120.19 Aligned_cols=155 Identities=10% Similarity=0.035 Sum_probs=128.6
Q ss_pred cchhhhhhHHHHHHHHHHHhH-HHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGIN-TNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
|.++......++.+....... .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+..+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 345556666666666666665 7788888877999999999999999999999999999999999 99999888877766
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++..+..... .+.+.+++..++.|++.+...+...+++.|.+|+++ |++.+++++
T Consensus 289 ~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 343 (365)
T TIGR00900 289 LAILVVGLTP-------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQF 343 (365)
T ss_pred HHHHHHHhhc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 6666665441 026667788889999999999999999999999887 999999999
Q ss_pred HHHHHHHHHhhhhheeeccccc
Q 008792 189 FSINIGALVAASCLVWIQTNVG 210 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~ 210 (553)
...++|..++|.++|++.+..|
T Consensus 344 ~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 344 SLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999887643
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-10 Score=113.26 Aligned_cols=163 Identities=14% Similarity=0.030 Sum_probs=125.5
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhh--cCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFE--LNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
.|.+++..+..++....-.++..|++.|+.+. +|.++.+.+...+.+..+..++.+++++++||+ |+||.+.++.++
T Consensus 139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l 217 (310)
T TIGR01272 139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFL 217 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 34566666666666666778889999999864 699999999999999999999999999999999 999988888777
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.+++..+.... + +.. ...+.++.|++.+..+|...+...+.+|++. +++.++
T Consensus 218 ~~~~~~l~~~~---~-----------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai 269 (310)
T TIGR01272 218 AVLLSIGAALT---H-----------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGI 269 (310)
T ss_pred HHHHHHHHHHc---C-----------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHH
Confidence 76666444433 1 111 1234557899999999999998888888643 233344
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHH
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVA 221 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~ 221 (553)
. ....+|+++.|.+.|.+.+..|.+.+|++..+.
T Consensus 270 ~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 270 L-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred H-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4 456789999999999999988988888755543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.1e-10 Score=116.97 Aligned_cols=164 Identities=10% Similarity=0.001 Sum_probs=115.2
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhh-hcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHH-HHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRF-ELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWT-IASFSIIYV 108 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~-~~~~~~~~~ 108 (553)
.+|......++....++++..++|.|+++ ..+.+..+++.......++..++.+++|+++||+ +||+. +....+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 45667777788888889999999999976 3477888899999999999999999999999999 87664 333333333
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++..+.... + ... ..+.+..+.+++.....+.......|.+|+++ |++++++.+
T Consensus 322 ~~~~~~~~~---~----------------~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~ 375 (412)
T TIGR02332 322 AGWLLASAT---D----------------HNL-IQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVIN 375 (412)
T ss_pred HHHHHHHhc---C----------------CHH-HHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHH
Confidence 333222111 1 111 11112222233333223333455567788877 999999999
Q ss_pred HHHHHHHHHhhhhheeeccccc-chhhhHHHHHH
Q 008792 189 FSINIGALVAASCLVWIQTNVG-WGWGFGIPAVA 221 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~ 221 (553)
...++|+.++|.+.|.+.+..| |++.|++.++.
T Consensus 376 ~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 376 ATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999998774 99888766553
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=116.45 Aligned_cols=178 Identities=14% Similarity=-0.034 Sum_probs=124.7
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHH--------
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTI-------- 100 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~-------- 100 (553)
++.+|...+..++....++.+..++|.|+.+.+|.+..+.++..+...++..++.+++|+++||+ ++|+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence 45678888899999999999999999999999999999999999999999999999999999998 644211
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhh
Q 008792 101 ASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK 180 (553)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 180 (553)
..+......+..+..... .. .+....++...+.+.+.+...+.......|..|+ . +
T Consensus 339 ~~~~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~ 394 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALPY--LS---------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------L 394 (465)
T ss_pred HHHHHHHHHHHHHHHHHH--cC---------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------H
Confidence 111111111111111110 00 1233334444455555555555555555666664 4 8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhheeecccc---cchhhhHHHHHHHHHHHHHHHh
Q 008792 181 SSFFNWFYFSINIGALVAASCLVWIQTNV---GWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 181 ~~~~~~~~~~~~~G~~~~~~i~g~l~~~~---~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
+...++.++..++|+.++|.+.|++.+.. +|+..|.+.++..+++.+....
T Consensus 395 g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 395 GFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 99999999999999999999999887643 4888888877776666555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-10 Score=121.18 Aligned_cols=162 Identities=16% Similarity=0.102 Sum_probs=122.5
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.++..+...++...+.+....+.+.|.+..++ +..+.+...+...++..++.++.|+++||+ |||+++..+.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 445666667777777777666666666665666 455667777778899999999999999999 999999999888777
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchH-hHhhhhhhHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEA-EKKKKSSFFNWFY 188 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~ 188 (553)
+.++..+.. .+.+.+++..++.|++.+...+..+++++|..|.++.. .+..+|.++++++
T Consensus 300 ~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 360 (437)
T TIGR00792 300 GYLIFFFAG-------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRT 360 (437)
T ss_pred HHHHHHHcc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHH
Confidence 776665431 13455667777889999988888999999987632110 0111788999999
Q ss_pred HHHHHHHHHhhhhheeecccccch
Q 008792 189 FSINIGALVAASCLVWIQTNVGWG 212 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~ 212 (553)
+...+|..+++.+.|++.+..||.
T Consensus 361 ~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 361 FVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999988776663
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-10 Score=117.27 Aligned_cols=173 Identities=10% Similarity=0.048 Sum_probs=113.6
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHH-HHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWS-GTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
++..+...++.+.+......+.++|+.+++|.++.+.+++.+... ++..++.+++|++.||+ |||+.+.++.+...+.
T Consensus 211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~ 289 (402)
T PRK11902 211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVS 289 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 444444445544443333345556777889999999998876554 46889999999999999 9999887777665555
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHH----HHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGL----YLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.+........+ .+.+.++... +..|++.+...+....++.+.+|.++ + ++
T Consensus 290 ~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~ 343 (402)
T PRK11902 290 NLGYWVLAVTP----------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----AL 343 (402)
T ss_pred HHHHHHHHhcC----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HH
Confidence 44332211101 1234344433 34455566666666777777777544 3 44
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
++...++|..+++.++|.+.+..||+..|.+.+++.++++...+.
T Consensus 344 ~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 344 LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 444556777766678999999999999998888777776655443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-10 Score=118.01 Aligned_cols=171 Identities=9% Similarity=0.030 Sum_probs=128.7
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhc---CCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFEL---NQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
|.++..+...++....+.....+.+.|+.+.+ +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l 293 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTI 293 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence 34455555555555555555567888887765 45556678888888888899999999999999 999999998888
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.++...+.... .+.+.+++..++.|++..........+..+..+++. +++..+.
T Consensus 294 ~~l~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~ 347 (396)
T TIGR00882 294 MSVRIIGSSFA--------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLI 347 (396)
T ss_pred HHHHHHHHHhc--------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehH
Confidence 78777665554 235666777888888876555555556667777766 7777766
Q ss_pred -HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHH
Q 008792 187 -FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 187 -~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~ 227 (553)
++....+|..++|.++|++.+..||+..|.+.+++.++..+
T Consensus 348 ~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 348 GFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999987776655543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.9e-10 Score=115.26 Aligned_cols=175 Identities=15% Similarity=-0.054 Sum_probs=125.8
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHH-HHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWS-GTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
.++..+...++...+......+.++|+.+ .|.++++.+++..... ....++.+++|++.||+ |+|+.+..+.+...+
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 35556666667777777777888889876 7999999999887765 46667789999999999 999999887765533
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCC-CchHhHhhhhhhHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDD-YDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~ 188 (553)
.........+.+. ..+...++....+.+++.+...+...+...+..++ +. +++.+++.+
T Consensus 287 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 346 (390)
T TIGR02718 287 LALLWFAQAAFWL--------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQ 346 (390)
T ss_pred HHHHHHHHHHccc--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHH
Confidence 3332221111000 01233334444555666677667777776677665 55 899999999
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHH
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~ 227 (553)
...++|..++|.++|++.+..||+..|.+.+++.+++..
T Consensus 347 ~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 347 STRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877766555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=111.87 Aligned_cols=156 Identities=12% Similarity=0.031 Sum_probs=117.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+.++......++....++++..++|.|+++ .|.+..+.+...+...++..++.++.|+++||+.+||+.+..+.++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 345555566666777788888899999875 7999999999999999999999999999999993456666777777777
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+.+.+....+ ... . ...++.|++.+...|...+.+.+..+++++ ++..+++.+.
T Consensus 276 ~~~~~~~~~~------------------~~~--~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~ 329 (355)
T TIGR00896 276 GLCGLLFAPM------------------HGL--W-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAALSAMAQS 329 (355)
T ss_pred HHHHHHHhhh------------------hHH--H-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHHHHHHHHH
Confidence 7666654411 111 1 134677999998888877776665554321 7888888888
Q ss_pred HHHHHHHHhhhhheeeccccc-ch
Q 008792 190 SINIGALVAASCLVWIQTNVG-WG 212 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~-~~ 212 (553)
..++|..++|.+.|++.++.| |.
T Consensus 330 ~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 330 IGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Confidence 889999999999999988765 44
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.06 E-value=8e-10 Score=115.04 Aligned_cols=148 Identities=11% Similarity=0.023 Sum_probs=114.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+..+......++....++.+..++| ++.++++.+..+.+...+...++..++.++.|+++||+ |||+.+.... +..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~ 326 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLL-LGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHH-HHHH
Confidence 3344555556666777777777787 66678899999999999999999999999999999999 9885444433 3333
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
...+..... .+...+++..++.|++.+...+...+++.|.+|+++ |++++++.+.
T Consensus 327 ~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 381 (398)
T TIGR00895 327 FAVLVGSTL-------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIG 381 (398)
T ss_pred HHHHHHHHh-------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHH
Confidence 333322210 135556677788899999999999999999999988 9999999999
Q ss_pred HHHHHHHHhhhhheee
Q 008792 190 SINIGALVAASCLVWI 205 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l 205 (553)
..++|..+||.++|++
T Consensus 382 ~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 382 IGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHhHHhc
Confidence 9999999999999875
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=112.69 Aligned_cols=173 Identities=11% Similarity=0.021 Sum_probs=118.6
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGM 111 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 111 (553)
.+......++.+...+....++++|+.+.+|.++.+.++..+...++..++.++.|+++||+ |+|+.+..+..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 34444444444555555566778888888999999999999999999999999999999999 99999988887777776
Q ss_pred HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCC-CCCchHhHhhhhhhHHHHHHH
Q 008792 112 TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQF-DDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~ 190 (553)
++..... .+.+...+..++.+.+.....+.......+.. +++. ++.+ ..+..
T Consensus 280 ~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~ 332 (382)
T PRK10091 280 LMLFFFG-------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIA 332 (382)
T ss_pred HHHHHHH-------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHH
Confidence 5554321 11233344444555555444443333333333 3332 4433 34667
Q ss_pred HHHHHHHhhhhheeeccc-ccchhhhHHHHHHHHHHHHHHHhc
Q 008792 191 INIGALVAASCLVWIQTN-VGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 191 ~~~G~~~~~~i~g~l~~~-~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
.++|..+||.++|++.+. .+|++.+.+.++..++.+......
T Consensus 333 ~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 333 FNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 789999999999998884 689999988877666665544433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-09 Score=113.56 Aligned_cols=149 Identities=15% Similarity=0.008 Sum_probs=108.1
Q ss_pred HHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhccc
Q 008792 42 ERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVH 121 (553)
Q Consensus 42 ~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~ 121 (553)
.....+.+..++|.|+.+ .|.+..+.+...+...++..++.++.|+++||+ |||+.+..+.++..+...+.... +
T Consensus 243 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~---~ 317 (426)
T PRK12307 243 IFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI---P 317 (426)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH---c
Confidence 333444567788888875 699999999888889999999999999999999 99999988877665555444322 1
Q ss_pred CCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhh
Q 008792 122 GLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASC 201 (553)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i 201 (553)
. .....+....+..+.+..+..+..+.++.|.+|++. |++++|+.+...++|+.++|.+
T Consensus 318 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~ 376 (426)
T PRK12307 318 Q---------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMA 376 (426)
T ss_pred c---------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHH
Confidence 1 112212222222223333334555677889999988 9999999999999999999999
Q ss_pred heeecccccchhhhH
Q 008792 202 LVWIQTNVGWGWGFG 216 (553)
Q Consensus 202 ~g~l~~~~~~~~~f~ 216 (553)
.|++.+..|+....+
T Consensus 377 ~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 377 ATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHcccHHHHHH
Confidence 999999888765433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=113.37 Aligned_cols=175 Identities=13% Similarity=0.006 Sum_probs=132.1
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhh--hcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRF--ELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
|.++......++..+.+.....+.+.|+.. +.+.+....+.......+......++.|++.||+ ++|+.+..+.++.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence 445555566666666655555666777643 3455666677777777777777788999999999 9999999888877
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
.++........ .+.+.+.+..++.++|.+...|...+++.+..|++. |+++++..
T Consensus 285 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~ 339 (395)
T PRK10054 285 VIGLVGFIFSG-------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQ 339 (395)
T ss_pred HHHHHHHHHcc-------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHH
Confidence 77776665431 235556677888999998888888889999999887 88898876
Q ss_pred HHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 188 YFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
+ ...+|..+||.++|++.+..|....|++.+...++++...+.
T Consensus 340 ~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 382 (395)
T PRK10054 340 S-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLK 382 (395)
T ss_pred H-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHh
Confidence 5 566899999999999999999888887766666666555553
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=117.11 Aligned_cols=154 Identities=9% Similarity=-0.052 Sum_probs=129.4
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.+.......++...+.++...++|.|+++.+|.|+.+++.......++..++.++.|++.||+ |||+.+..+.++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4556666777777888888888999999999999999999999999999999999999999999 999999888888877
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+..++..... . .+.+......++.|++.|...+.....+.+..|+++ ++.+.+++++
T Consensus 338 ~~~~l~~~~~-~----------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 394 (495)
T PRK14995 338 SFYGLAMTDF-S----------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETM 394 (495)
T ss_pred HHHHHHHhcC-C----------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHH
Confidence 7766654311 0 124445667788999999988888888889999888 9999999999
Q ss_pred HHHHHHHHhhhhheeecc
Q 008792 190 SINIGALVAASCLVWIQT 207 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~ 207 (553)
..++|..+|+.+.|.+.+
T Consensus 395 ~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 395 AYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887754
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-09 Score=109.68 Aligned_cols=138 Identities=15% Similarity=0.246 Sum_probs=105.0
Q ss_pred cccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccc
Q 008792 357 SLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMS 436 (553)
Q Consensus 357 ~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (553)
...+.+-.+-++.-++..+ +.+| .++...+..|+.+..+-++.++.+ .+
T Consensus 410 v~~a~~~~gEI~~~ffs~k----lI~k-------iGHv~v~~lgLa~~~~Rf~~~S~L--------------------~n 458 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFK----LIEK-------IGHVNVMYLGLACNVGRFLYYSYL--------------------QN 458 (618)
T ss_pred ehhhhhccchHHHHHHHHH----HHHH-------hcccceeeehhhHHHHHHHHHHHh--------------------cC
Confidence 3444455555555555554 4555 444566778888888888888877 37
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHH-HHHHHHHhhHhhhhccccccCCCCCCCccCCCCC
Q 008792 437 IFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTT-AALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNY 515 (553)
Q Consensus 437 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~ 515 (553)
+|.+++.-++.|+..+.++...-+|+...+|++.|.++.|+.+.. .++|-.+|.++.+.+....
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f--------------- 523 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF--------------- 523 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee---------------
Confidence 777788889999999999999999999999999999999999955 5999999999998776533
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh
Q 008792 516 GNLHYFFWLLALLSVLNLGVYLMVAR 541 (553)
Q Consensus 516 ~~~~~~f~i~~~~~~v~~~~~~~~~~ 541 (553)
+...+|+++++.+++.++++...-+
T Consensus 524 -g~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 524 -GARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2345688888888887776665443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=110.34 Aligned_cols=161 Identities=9% Similarity=0.008 Sum_probs=117.2
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
.++...+...+.....+....+.|.|+.+++|.++.+.+.+.+...++..++.++.|++.||+ |||+.+..+..+..++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 285 (385)
T TIGR00710 207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS 285 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 345555555556666677777788899889999999999999999999999999999999999 9999998887777777
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
.+++......+. .....++....+.|++.+...+.......|..| ++ |+++.++.+..
T Consensus 286 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~ 343 (385)
T TIGR00710 286 AVLLEITAILGL---------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTL 343 (385)
T ss_pred HHHHHHHHHhcc---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHH
Confidence 666654421010 124445556777888888888888888888876 45 88899987776
Q ss_pred HHH-HHHHhhhhheeecccccchhhh
Q 008792 191 INI-GALVAASCLVWIQTNVGWGWGF 215 (553)
Q Consensus 191 ~~~-G~~~~~~i~g~l~~~~~~~~~f 215 (553)
... |+..+|. .+.+.+..+|...+
T Consensus 344 ~~~~g~i~~~~-~~~~~~~~~~~~~~ 368 (385)
T TIGR00710 344 RLVLGAIVGYL-VSLIHGNTAWPMSL 368 (385)
T ss_pred HHHHHHHHHHH-HHhccccChHHHHH
Confidence 655 5555555 44555544555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=116.85 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=129.3
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.++......++..+.+++...++|.|+++.+|.++.+.++......++..++.+++|++.||+ |||+.+.++..+.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 4556667777788888888888999999999999999999999999999999999999999999 999999998888888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+..+..+... + +.+.+.+....++.|++.+...+.......+..|+++ |+++.+++++
T Consensus 334 ~~~~~~~~~~-~---------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 391 (485)
T TIGR00711 334 GFYWRAFTFT-P---------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNF 391 (485)
T ss_pred HHHHHhccCC-C---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHH
Confidence 7776653211 1 1235556666788899998887777777778888877 9999999999
Q ss_pred HHHHHHHHhhhhheeeccc
Q 008792 190 SINIGALVAASCLVWIQTN 208 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~ 208 (553)
..++|+.+|+.+.+.+.++
T Consensus 392 ~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 392 TRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.7e-08 Score=96.74 Aligned_cols=156 Identities=18% Similarity=0.096 Sum_probs=110.6
Q ss_pred hhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCC
Q 008792 57 LRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPT 136 (553)
Q Consensus 57 l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (553)
+.+.+|++..|++.+.....+...+..++.|.++||+ |||+..++..+++.++++.--.
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~-------------------- 118 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS-------------------- 118 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc--------------------
Confidence 3467999999999999999999999999999999999 9999999988888888764322
Q ss_pred chhHHHHHHHHHHHhhccccccccccccc-ccCCCCCchHhHhhhhhhHHHHH-HHHHHHHHHhhhhheeecccccc--h
Q 008792 137 GLQIAVFFVGLYLIALGTGGIKPCVSSFG-ADQFDDYDEAEKKKKSSFFNWFY-FSINIGALVAASCLVWIQTNVGW--G 212 (553)
Q Consensus 137 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~g~l~~~~~~--~ 212 (553)
.++..++++|++.|++.....++..+.. .|+-...-+++ ..+.-++... ..+.+-++.+.+++.++.+..+. .
T Consensus 119 -~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~v 195 (354)
T PF05631_consen 119 -SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPV 195 (354)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCc
Confidence 4588899999999999999888775543 33321111111 1444455444 33344455555666666665554 7
Q ss_pred hhhHHHHHHHHHHHHHHHhcccee
Q 008792 213 WGFGIPAVAMAIAVVSFFAGSRLY 236 (553)
Q Consensus 213 ~~f~i~~~~~~~~~~~~~~~~~~~ 236 (553)
.+|..++++.+++.+......++.
T Consensus 196 aPF~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 196 APFDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred chHHHHHHHHHHHHHHHHhccccc
Confidence 788888877777766655544443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=110.01 Aligned_cols=159 Identities=11% Similarity=0.050 Sum_probs=111.4
Q ss_pred HHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCC
Q 008792 52 NLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRN 131 (553)
Q Consensus 52 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 131 (553)
+.|.+ .++.|.+.....+......+...++.+++|+++||+ |||+.++.+.++.+++.++++.....+.
T Consensus 293 ~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~--------- 361 (479)
T PRK10077 293 YAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA--------- 361 (479)
T ss_pred HHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc---------
Confidence 34443 456788877777777777888899999999999999 9999999999988888877764421010
Q ss_pred CcCCCchhHHHHHHHHHHHhhcccc-cccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhhe------e
Q 008792 132 VCHPTGLQIAVFFVGLYLIALGTGG-IKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLV------W 204 (553)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g------~ 204 (553)
... ......++.+++.+. ..|..++++.|.+|+++ |++++++.+...++|..+++.+.+ +
T Consensus 362 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~ 428 (479)
T PRK10077 362 ------PGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNSW 428 (479)
T ss_pred ------ccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccc
Confidence 112 222233333333332 34677899999999888 999999998888888887754443 4
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 205 IQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 205 l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
+.+..+|++.|++.++..+++.+..+...+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 429 LVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred hhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 556778888888777666666555444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=114.39 Aligned_cols=168 Identities=16% Similarity=0.114 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhh------------HHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHH
Q 008792 37 GNECCERLAYYGINTNLVNYLRFELNQGNVQAVN------------NVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFS 104 (553)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~ 104 (553)
...++..+.+|++..+.|.+++ +.|++..+.+. ......++..++.+++++++||+ |||+.++++.
T Consensus 295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~ 372 (502)
T TIGR00887 295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGF 372 (502)
T ss_pred HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHH
Confidence 3445566778888888888875 57876543221 12233445566888999999999 9999998888
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhH
Q 008792 105 IIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFF 184 (553)
Q Consensus 105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 184 (553)
.+.+++..+.++...... .+ ..+....+...++.....+..+.+.+|.+|++. |+++.
T Consensus 373 ~~~~~~~~~l~~~~~~~~---------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~ 430 (502)
T TIGR00887 373 FILTVLFFVLGFAYNHLS---------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAH 430 (502)
T ss_pred HHHHHHHHHHHHHHHhcc---------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHH
Confidence 777777666654311000 01 111111111222222334566777899999998 99999
Q ss_pred HHHHHHHHHHHHHhhhhheeeccc----------ccchhhhHHHHHHHHHHHHH
Q 008792 185 NWFYFSINIGALVAASCLVWIQTN----------VGWGWGFGIPAVAMAIAVVS 228 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~l~~~----------~~~~~~f~i~~~~~~~~~~~ 228 (553)
++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 431 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 431 GISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999988763 33455666665555555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.3e-09 Score=110.90 Aligned_cols=178 Identities=13% Similarity=0.030 Sum_probs=127.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccch-------H-HHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGR-------Y-WTIA 101 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-------~-~~~~ 101 (553)
+.+|.+.+..++++++++.++.++|.|+.+.+|++..+.|+..++..+...+..+++|.++||. -+ + |.+-
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999998 33 2 2221
Q ss_pred -HHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhh
Q 008792 102 -SFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK 180 (553)
Q Consensus 102 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 180 (553)
++....++.++.+++. + |++.......+.++..+.|+..+++..+ ..|..|.+ -
T Consensus 337 ~i~~~~~ai~l~~l~~~---~-----------~~~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~apq~-------a 391 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAFT---S-----------DEHRLLAVILLTIAIGLSGFNISGFYKN----HQDIAPQH-------A 391 (466)
T ss_pred hHHHHHHHHHHHeeeec---C-----------CCcchHHHHHHHHHHHHcccchhhhHhh----hhhccchH-------H
Confidence 2233333333333333 1 1112122333333344444444443322 22334433 6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhheeeccc---ccchhhhHHHHHHHHHHHHHHHhcc
Q 008792 181 SSFFNWFYFSINIGALVAASCLVWIQTN---VGWGWGFGIPAVAMAIAVVSFFAGS 233 (553)
Q Consensus 181 ~~~~~~~~~~~~~G~~~~~~i~g~l~~~---~~~~~~f~i~~~~~~~~~~~~~~~~ 233 (553)
+..+++.+...++.+.++|.+.|.+... ..|++.|.+.+++.+++.+++.++.
T Consensus 392 ~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 392 GFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence 8899999999999999999999999842 3799999999988888876665543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.2e-09 Score=112.76 Aligned_cols=172 Identities=11% Similarity=0.079 Sum_probs=144.9
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGM 111 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 111 (553)
+...+...++.++....+...+|.+.++.+|.++...|++.++..++..++.++.+++.+|+ ++++.+..+.++.+++.
T Consensus 220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~ 298 (524)
T PF05977_consen 220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL 298 (524)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence 44444445555555555667788899999999999999999999999999999999999999 99999999988888888
Q ss_pred HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHH
Q 008792 112 TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSI 191 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 191 (553)
+.+++. .+.+...+..++.|++.....+..++.+-+..|++. ||+.++++++..
T Consensus 299 ~~lal~--------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~ 352 (524)
T PF05977_consen 299 LLLALS--------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVF 352 (524)
T ss_pred HHHhcc--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHH
Confidence 888776 346777788888999999888888888889999988 999999999999
Q ss_pred HHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHH
Q 008792 192 NIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 192 ~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
..+..+|..+.|.+.+..|-+..+.++++..+++.++..
T Consensus 353 ~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 353 FGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877766655555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-09 Score=110.20 Aligned_cols=167 Identities=15% Similarity=0.127 Sum_probs=124.1
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHh-hhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYL-RFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
++......++.....++...+.+.|+ ++.+|.++.+.+.....+.++..++.+++|++.||+ |||+++..+.++.+++
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 34455555666666676777888886 567899999999999999999999999999999999 9999998887766655
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
..+..+. + +. ..+....+.|++.+...|...+...+.+|++ .+.+.++..+
T Consensus 339 ~~~~~~~---~-----------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l~~~- 389 (438)
T PRK10133 339 CLISAFA---G-----------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIVM- 389 (438)
T ss_pred HHHHHHc---C-----------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhHHhH-
Confidence 5544433 1 11 1244567789999999999999999988764 2344555443
Q ss_pred HHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHHH
Q 008792 191 INIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVVS 228 (553)
Q Consensus 191 ~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~~ 228 (553)
..+|+.++|.+.|.+.+..| -+..|.+..+..+..+..
T Consensus 390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 33678888899999988887 677887666555444443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-08 Score=107.32 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=134.3
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
.|.+...+...++...+........+.|.+..++.+ ...+.......+...++.++.++++||+ |+|+.+..+.++.+
T Consensus 224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAA 301 (428)
T ss_pred cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHH
Confidence 355677777888888888877888888888888877 5567777788999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchH-hHhhhhhhHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEA-EKKKKSSFFNWF 187 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~ 187 (553)
++.++..+... .+.+.+++..++.|++.+...+..+++++|..+.++.+ .+...|..++.+
T Consensus 302 ~~~~~~~~~~~------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~ 363 (428)
T PF13347_consen 302 LGFLLLFFLGP------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVN 363 (428)
T ss_pred HHHHHHHHHHh------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhh
Confidence 99988877621 35788889999999999999999999999999854321 112257888899
Q ss_pred HHHHHHHHHHhhhhheeecccccch
Q 008792 188 YFSINIGALVAASCLVWIQTNVGWG 212 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~~~~ 212 (553)
++...+|..+++.+.+.+.+..|+.
T Consensus 364 ~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 364 SFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999998876655543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=105.86 Aligned_cols=168 Identities=8% Similarity=-0.053 Sum_probs=120.2
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.++......++.....++...+.++++.+++|++..+.+.+.....++..++.++.|++.||. +|+..+....+....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~ 294 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVS 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 3355555555555666666666665555567899999999999999999999999999999996 555444433332333
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
...+.... .+.+.+.+..++.|++.+...+..++++.+..|+ + +++..+....
T Consensus 295 ~~~l~~~~--------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~ 347 (394)
T PRK10213 295 ALVLTLWG--------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGSIQVA 347 (394)
T ss_pred HHHHHHHh--------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHHHHHH
Confidence 33333222 2355666778888999999888888888888874 3 4556667777
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHH
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIA 225 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~ 225 (553)
..++|..+||.++|++.+..|++..+...+++.++.
T Consensus 348 ~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 348 VIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 788999999999999999999988887766544433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.5e-09 Score=107.24 Aligned_cols=174 Identities=14% Similarity=0.073 Sum_probs=145.0
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
.|.+.+.+...++.+=+...+......|..+++|++..+..++.....+...++.+++|+|.||+ |-|+++..+++++.
T Consensus 251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~ 329 (438)
T COG2270 251 RKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILS 329 (438)
T ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHH
Confidence 35778888888888888888889999999999999999999999999999999999999999999 99999999998887
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
+.++...+.. ....+.+.-++.|...|..++..-++.++++|+++ -++.||+|+
T Consensus 330 ~~~~~~~~~~--------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglya 383 (438)
T COG2270 330 IAALYLIFLE--------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYA 383 (438)
T ss_pred HHHHHHHHcc--------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhh
Confidence 7777665541 23345566678899999999999999999999998 899999999
Q ss_pred HHHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHHHH
Q 008792 189 FSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVVSF 229 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~~~ 229 (553)
+.......+||.+.+.+.+.+| -|..+...+++..+++..+
T Consensus 384 ltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 384 LTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 9999999999999998877654 5555554445455554443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-09 Score=110.26 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=119.2
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCc-hhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQG-NVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
.+|..+...++..+.++....++|.|+.+.+|.+ ..+.+...+...+...++.++.|+++||+ |+|+..........+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 285 (352)
T PF07690_consen 207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLIL 285 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 3444555666666677778899999999999999 78999999999999999999999999999 988887777776666
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+...+.+.... .+....+...++.|++.+...+...+++.|.+|+++ |+++.++.+.
T Consensus 286 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 342 (352)
T PF07690_consen 286 GALGLLLLPFS-----------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNS 342 (352)
T ss_dssp HHHHHCCSHHH-----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHH
T ss_pred HHHHHHHHHHh-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHH
Confidence 66666544221 134556667778899999999999999999999988 9999999999
Q ss_pred HHHHHHHHhh
Q 008792 190 SINIGALVAA 199 (553)
Q Consensus 190 ~~~~G~~~~~ 199 (553)
..++|..+||
T Consensus 343 ~~~~~~~igP 352 (352)
T PF07690_consen 343 IGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 9999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=107.63 Aligned_cols=154 Identities=10% Similarity=0.035 Sum_probs=110.4
Q ss_pred HhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008792 48 GINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLC 127 (553)
Q Consensus 48 ~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (553)
....++|.|+++..+ ++.+.++..+...+....+....+++.||..+.++.+..+.++.+++..+++..
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---------- 294 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---------- 294 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence 345678888876555 667788877777666665555556666553276777777777777777666555
Q ss_pred CCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecc
Q 008792 128 DKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQT 207 (553)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~ 207 (553)
.+.+.+.+...+.+++.+...|...+++.|..|+++ |++++++++...++|..+||.++|++.+
T Consensus 295 ----------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 295 ----------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 234555566677888888888888999999999988 9999999999999999999999999987
Q ss_pred cc---c-chhhhHHHHHHHHHHHHH
Q 008792 208 NV---G-WGWGFGIPAVAMAIAVVS 228 (553)
Q Consensus 208 ~~---~-~~~~f~i~~~~~~~~~~~ 228 (553)
.. + ....+.+...+.++..+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 359 LGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHhhcCCcchHHHHHHHHHHHHHHH
Confidence 64 2 234444444444444443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=105.31 Aligned_cols=186 Identities=9% Similarity=-0.004 Sum_probs=124.2
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+..|++.+..++...++.++..++|.|+++.++ ............+...+..|++|+++||+ |+||++.++.+...+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence 347888888888888888888899999988663 22333334455778889999999999999 999999998887777
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCC---------------ch
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDY---------------DE 174 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---------------~~ 174 (553)
+.....+.. |. +...+++.+.+..+...++.|.-+.+...++.+.+|++ ..
T Consensus 329 ~~~~~~l~l--p~------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~ 394 (462)
T PRK15034 329 FSALLFLTL--PG------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQR 394 (462)
T ss_pred HHHHHHHHh--cc------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhh
Confidence 664433321 11 01134555555555555555555556666677777641 00
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccc-ccchhhhHHHHHHHHHHHHHHHhc
Q 008792 175 AEKKKKSSFFNWFYFSINIGALVAASCLVWIQTN-VGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 175 ~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~-~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
..+..-|...|+......+|+.+-|.+.|...+. .++...|+...+..++++.+-++.
T Consensus 395 ~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 395 EAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1111256777888888888888888777766554 457778887777776666655443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=121.83 Aligned_cols=164 Identities=11% Similarity=0.006 Sum_probs=131.1
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchh-hhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNV-QAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
+.++..++..++.....+.+..++|.|+.+.+|.+.. +.+++.+...++..++.+++|+++||+ ++++.+.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence 3445555555666666667778899999999999998 999999999999999999999999999 99998888888777
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++.++..+. .+.+.+++..++.|++.+...+...+++.+.+|++. |++++++.+
T Consensus 311 ~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~ 364 (1146)
T PRK08633 311 LSLFLLPTA--------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANN 364 (1146)
T ss_pred HHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHH
Confidence 777766655 235667777888899999988888999999999988 999999999
Q ss_pred HHHHHHHHHhhhhheeecc-cccchhhhHHHHH
Q 008792 189 FSINIGALVAASCLVWIQT-NVGWGWGFGIPAV 220 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~-~~~~~~~f~i~~~ 220 (553)
+..++|.++++.+++.+.. ..++...|++.+.
T Consensus 365 ~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 365 FLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999888887776543 2344445554443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=120.62 Aligned_cols=183 Identities=10% Similarity=-0.080 Sum_probs=134.1
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+.++...+..++.++....+..++|.|+.+.+|.+..+.+++.+...++..++.++.|+++|+. ++++.+..+.++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence 4567777777777777788888999999999999999999999999999999999999999988 777766666655555
Q ss_pred HHHHHHhhh--cccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 110 GMTILTMSA--SVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 110 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
+.+.+++.. ..+.....+. -.+.-...+.+.+++..++.|++.+...+...+++.+.+|++. ||++++..
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~ 375 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKS--ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAAN 375 (1140)
T ss_pred HHHHHHhcccccccccccccc--hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHH
Confidence 554443320 0000000000 0000000235567778888899999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhhhhheeecc-cccchhhhHHHHHH
Q 008792 188 YFSINIGALVAASCLVWIQT-NVGWGWGFGIPAVA 221 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~-~~~~~~~f~i~~~~ 221 (553)
++..++|..+++.+.+.+.+ ..++...+++.+++
T Consensus 376 ~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 376 NVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999999988863 44566655544443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=108.86 Aligned_cols=163 Identities=13% Similarity=0.164 Sum_probs=124.3
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.++......++...++.......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4456666677777777777777777888888888776666555555667888999999999999 999999999888888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchH-hHhhhhhhHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEA-EKKKKSSFFNWFY 188 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~ 188 (553)
+.++..+. +. .+.+.+++..++.|+|.+...+...++.+|..|.++.+ .+..+|..+++++
T Consensus 307 ~~~~~~~~---~~---------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~ 368 (448)
T PRK09848 307 GYLLFFWV---SV---------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFS 368 (448)
T ss_pred HHHHHHHc---Cc---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHH
Confidence 77766543 11 34666677788889999999999999999998764311 0111588889999
Q ss_pred HHHHHHHHHhhhhheeecccccc
Q 008792 189 FSINIGALVAASCLVWIQTNVGW 211 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~ 211 (553)
+...+|..+|+.+.+.+.+..||
T Consensus 369 ~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 369 FTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999887665555
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.2e-08 Score=101.77 Aligned_cols=166 Identities=13% Similarity=-0.043 Sum_probs=112.5
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchH---HHHH-HHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRY---WTIA-SFSI 105 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~---~~~~-~~~~ 105 (553)
|.+|......++....+|++..|+|.|+++ .+++.. .+.......+... +..++++||. .|| +... ...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 557888889999999999999999999965 677754 5555444444444 4457888887 543 3322 2333
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 106 IYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
..++.....+.. .+....+....+.+++.....+..+++.+|.+|++. |+++.|
T Consensus 266 ~~a~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G 319 (368)
T TIGR00903 266 LIAAFFLALAFE--------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAG 319 (368)
T ss_pred HHHHHHHHHHHc--------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccc
Confidence 333333333322 112223344455666666666777889999999998 999999
Q ss_pred HHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHH
Q 008792 186 WFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSF 229 (553)
Q Consensus 186 ~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~ 229 (553)
+.+...++|+.++|.+.+.+.. +.+..|.+.++..+++.+..
T Consensus 320 ~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 320 AIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred hhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887663 66666666665555555544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.3e-08 Score=101.75 Aligned_cols=149 Identities=14% Similarity=-0.067 Sum_probs=99.6
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGM 111 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 111 (553)
.+......++...+.+.+..+.|.++.+.+|.++.+.+...+...++..++.+++|+++||+ |||+.+..+..+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 274 (377)
T PRK11102 196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG 274 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 44444555555566666677778888888999999999999999999999999999999999 99999988876544433
Q ss_pred HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH-
Q 008792 112 TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS- 190 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~- 190 (553)
+........+ .+.+...++..+.+.+.+...+.....+.|..| +. ++++.+.++..
T Consensus 275 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~ 331 (377)
T PRK11102 275 IWLVVSALLD----------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLR 331 (377)
T ss_pred HHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHH
Confidence 3222211001 123334444444444455555555566667666 45 78888875544
Q ss_pred HHHHHHHhhhhhee
Q 008792 191 INIGALVAASCLVW 204 (553)
Q Consensus 191 ~~~G~~~~~~i~g~ 204 (553)
..+|..+++.+++.
T Consensus 332 ~~~g~~~g~~~~~~ 345 (377)
T PRK11102 332 FGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHHHHHHhc
Confidence 45677777776543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.9e-08 Score=100.74 Aligned_cols=160 Identities=10% Similarity=-0.071 Sum_probs=117.7
Q ss_pred HHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhc
Q 008792 40 CCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSAS 119 (553)
Q Consensus 40 ~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~ 119 (553)
.+.+.........++.|+++.+|.++.+.|.+.+...++..++.++.+++.||. ++|+.+..+.. ..+........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~-- 290 (393)
T PRK11195 215 TLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQ-- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHH--
Confidence 334444455556677888888999999999999999999999999999999998 88888877743 33333333332
Q ss_pred ccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhh
Q 008792 120 VHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAA 199 (553)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 199 (553)
.+.+...+..++.|++.+...+..++.+.+..|++. + +++++++.++..++|..++.
T Consensus 291 ------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-~----~g~~~a~~~~~~~~~~~~~~ 347 (393)
T PRK11195 291 ------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-G----AGHSIAVQNFNENLAMLLML 347 (393)
T ss_pred ------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-c----chhHHHHHhHHHHHHHHHHH
Confidence 235556667778899998888888888777644432 1 68899999999999999999
Q ss_pred hhheeecccccchhhhHHHHHHHHHHHH
Q 008792 200 SCLVWIQTNVGWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 200 ~i~g~l~~~~~~~~~f~i~~~~~~~~~~ 227 (553)
.+.+.+ +..|-+..+++..+..++.+.
T Consensus 348 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 348 GLYSLL-VKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 988855 456777666665554444443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.1e-08 Score=101.20 Aligned_cols=153 Identities=8% Similarity=-0.024 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHh
Q 008792 37 GNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTM 116 (553)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~ 116 (553)
....+....++.+..+.|.|++ +.|.+..+.++......++..++..+.+++.||+ |+|+......+...++...+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~ 287 (401)
T PRK11043 210 LIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWL 287 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566677888775 5799999999888778888899999999999999 9998776665555554443322
Q ss_pred hhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHH
Q 008792 117 SASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGAL 196 (553)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 196 (553)
...... .+...+++...+.+++.+...|...+...|..| ++ |+++.++++.....++.
T Consensus 288 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~~~ 345 (401)
T PRK11043 288 ASLLSH---------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGLCF 345 (401)
T ss_pred HHHhcc---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHHHH
Confidence 211011 124445556667788888888888777777776 45 89999999988888888
Q ss_pred Hhhhhheeecccccchh
Q 008792 197 VAASCLVWIQTNVGWGW 213 (553)
Q Consensus 197 ~~~~i~g~l~~~~~~~~ 213 (553)
.++.+.|.+.+......
T Consensus 346 ~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 346 LASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHccCCChhHH
Confidence 88888888876443443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-08 Score=106.70 Aligned_cols=176 Identities=14% Similarity=0.086 Sum_probs=147.8
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccc--hHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLG--RYWTIASFSIIY 107 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--r~~~~~~~~~~~ 107 (553)
+.++...+...+..++++.-...++.|.. ..+.+..+++.++++..+...++.++.|+++|+. . ++.+..+++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 45666677777777787777788888876 8899999999999999999999999999999998 6 444555666666
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
.++.+.+++. .+++.++..-++.|++.|.........+.|+.+.++ -..++|+.
T Consensus 376 gl~~~~~p~~--------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~ 429 (509)
T KOG2504|consen 376 GLARLFLPFA--------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLL 429 (509)
T ss_pred HHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHH
Confidence 6666666666 347778888889999999988888889999999988 99999999
Q ss_pred HHHHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHHHHHhcc
Q 008792 188 YFSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVVSFFAGS 233 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~ 233 (553)
.+...++..+||.+.|++.+..+ |...|+..++..+++...++...
T Consensus 430 l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 430 LLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999998877 99999999988888876655443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-07 Score=94.03 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=133.1
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
..|.+....-+.+..+|.++.|+|.++. +.|+|..++|+.++...+.+....+..-.+++|...+|+..+.....+.++
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 4678888888899999999999999986 569999999999999999999999999999998867788888888888888
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
.+.+.+. |. .... ...+++|+|.|..+|....++.+..++.+. -++..++.+-.
T Consensus 288 ~~G~~~~---P~---------------~~~~---lw~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgmaQg~ 341 (395)
T COG2807 288 LVGLLLA---PG---------------QLPI---LWALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGMAQGV 341 (395)
T ss_pred HHHHHHh---hh---------------hHHH---HHHHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHHhhhh
Confidence 8877766 22 1222 224789999999999999999998876542 56666777777
Q ss_pred HHHHHHHhhhhheeecccc-cchhhhHHHHHHHH
Q 008792 191 INIGALVAASCLVWIQTNV-GWGWGFGIPAVAMA 223 (553)
Q Consensus 191 ~~~G~~~~~~i~g~l~~~~-~~~~~f~i~~~~~~ 223 (553)
.++=+.+||.+.|++-|.. +|+.+++.-+...+
T Consensus 342 GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 342 GYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred hHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 7888888999999997764 58876654443333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-08 Score=101.31 Aligned_cols=144 Identities=11% Similarity=-0.017 Sum_probs=111.0
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHH-HHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWS-GTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
++...+..++.+.+++....++++|+.+ +|.++.+.+.+.+... +...++.+++|+++||+ |||+.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 5666667777788888889999999987 8999999998877655 57789999999999999 9999988888877776
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
..+..+..+..... + -...+.+.+....++.+++.+...+...+++.|.+|+++ |++.+++++..
T Consensus 289 ~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~ 353 (356)
T TIGR00901 289 NAGFVWLASNGHHD------G---ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSL 353 (356)
T ss_pred HHHHHHHHhcCccc------c---cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHH
Confidence 66554331100000 0 000134667777888899999999999999999999999 99999998776
Q ss_pred HH
Q 008792 191 IN 192 (553)
Q Consensus 191 ~~ 192 (553)
.+
T Consensus 354 ~~ 355 (356)
T TIGR00901 354 SA 355 (356)
T ss_pred Hh
Confidence 54
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=99.15 Aligned_cols=181 Identities=11% Similarity=0.018 Sum_probs=137.0
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|++...++..++...+.-....+.+.|+++.-+.+....+.+.+...+.-.+.-.+.+++..|+ |.|+++.++.+.+++
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~v 285 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAV 285 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3455666667777777777788889998765447777778777787888889999999999999 999999999998888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
=..+.+...+ +. +...........++|+..+....+...++.+..|++. |+++-++++.
T Consensus 286 R~~l~a~~~~-~~--------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~ 344 (400)
T PF03825_consen 286 RWLLYAYFSD-PW--------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSA 344 (400)
T ss_pred HHHHHHHhcC-Cc--------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHH
Confidence 8888776511 10 0112233444567999999999999999999999998 9999998665
Q ss_pred H-HHHHHHHhhhhheeecccccchh------hhHHHHHHHHHHHHHHHhc
Q 008792 190 S-INIGALVAASCLVWIQTNVGWGW------GFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 190 ~-~~~G~~~~~~i~g~l~~~~~~~~------~f~i~~~~~~~~~~~~~~~ 232 (553)
. ..+|..+|..++|++.+..|-+. .+.+.+++.++..+.++..
T Consensus 345 ~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 345 LSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 67999999999999998776443 4445555555555554443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=94.06 Aligned_cols=172 Identities=12% Similarity=0.045 Sum_probs=116.3
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhh-----------------c--CCchhhhhhHHHHHHHHHhhhhhhHHHHh
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFE-----------------L--NQGNVQAVNNVTNWSGTCYVMPLIGAFLA 90 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----------------l--~~s~~~~~~~~~~~~~~~~~~~~~~G~la 90 (553)
|.-+....+.|...++||+.+-......+.. . ..+...--.-+.+.++....|.++.+++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 4456777888889999998765443322211 1 11222222234556778899999999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCC
Q 008792 91 DAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFD 170 (553)
Q Consensus 91 Dr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 170 (553)
||+ |||+++..+.+++++.++++.... +......+++.+|++...+ +.+.+.|..|.+|
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~----------------~rn~~tvllf~arafisg~----fqvaYvYtPEVyP 464 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCK----------------TRNAYTVLLFTARAFISGA----FQVAYVYTPEVYP 464 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhc----------------CcchhHHHHHHHHHHHhch----heEEEEecCcccc
Confidence 998 999999999999998888776441 1122344566777765533 4567899999999
Q ss_pred CCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHH
Q 008792 171 DYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 171 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
... |+++.|.-..+..+|+++.|+++ ...+..-.-..+ +...+.+++.+...
T Consensus 465 Tav------RatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~-vy~~~~ilagIavc 516 (528)
T KOG0253|consen 465 TAV------RATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIF-VYGALFILAGIAVC 516 (528)
T ss_pred hhh------hhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHH-HHHHHHHHHHHHhe
Confidence 988 99999999999999999999988 333333233333 34444444444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=106.36 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=117.4
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.++..+...++.+...+......+.|.+..++ +....+.+.+...+...++.++.++++||+ |+|+.++++..+..+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 556666777777777777666666655554444 445566666666788889999999999999 999999988876666
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchH-hHhhhhhhHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEA-EKKKKSSFFNWFY 188 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~ 188 (553)
+.+........+. .+.+.+++..++.|++.+...+..+++++|..|.++.. .+...|..++++.
T Consensus 309 ~~~~~~~~~~~~~---------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~ 373 (473)
T PRK10429 309 SCGVLLLMGLAAP---------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQT 373 (473)
T ss_pred HHHHHHHHhccCc---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHH
Confidence 6555433200011 24556667777888999998899999999998744211 1111355788899
Q ss_pred HHHHHHHHHhhhhheeecccccc
Q 008792 189 FSINIGALVAASCLVWIQTNVGW 211 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~ 211 (553)
+...+|..+|+.+.|++.+..||
T Consensus 374 ~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 374 MVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999988766665
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-08 Score=106.34 Aligned_cols=132 Identities=11% Similarity=-0.001 Sum_probs=97.2
Q ss_pred HHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHh
Q 008792 72 VTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIA 151 (553)
Q Consensus 72 ~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 151 (553)
.....+...++.++.++++||+ |||+.+.++.++.+++.+++.... . ...+...+..++.+
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~---~---------------~~~~~~~~~~~~~~ 421 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP---V---------------DLYFLRTALAVLGK 421 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC---C---------------CchHHHHHHHHHHH
Confidence 3345567778899999999999 999999999888888777666541 1 11233344445556
Q ss_pred hcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHH
Q 008792 152 LGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
++.+...+..+++.+|.+|++. |++++++.+....+|++++|.+.+ +. ..++..++.+.++..+++.+..+
T Consensus 422 ~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 422 FGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHHH
Confidence 6666667788899999999988 999999999999999999999988 43 34566666666655555544443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-07 Score=97.97 Aligned_cols=71 Identities=7% Similarity=0.034 Sum_probs=60.0
Q ss_pred HHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008792 46 YYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMS 117 (553)
Q Consensus 46 ~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~ 117 (553)
......+.|.|+.+++|+++.+.+...+...+...++.++.|++.||+ |||+.+.++.++..++.....+.
T Consensus 219 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 219 ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667788888999999999998899999999999999999999 99999999988888777776655
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.2e-08 Score=99.11 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=103.7
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
..+......++.....+.+..+.+.|+++.+|.++.+.+...+...+...++.+++|+++||+ |||+.+..+......+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG 304 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence 355566666666666777888999999999999999999999999999999999999999999 9988888777666666
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
..+..+... + ..+.+..++...+.+++.|...+...+++++.+|+ + +++..|+.+..
T Consensus 305 ~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~ 361 (366)
T TIGR00886 305 AFLVVLGLV-S---------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVSGLVGAI 361 (366)
T ss_pred HHHHHhcCC-C---------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHHHHHHHh
Confidence 555544311 0 00344444555555555666566667778888873 4 89999998887
Q ss_pred HHHHH
Q 008792 191 INIGA 195 (553)
Q Consensus 191 ~~~G~ 195 (553)
.++|+
T Consensus 362 ~~~g~ 366 (366)
T TIGR00886 362 GNLGG 366 (366)
T ss_pred ccCCC
Confidence 77663
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.8e-08 Score=103.47 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=108.9
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
.++..+...++...+........+.|.+..++. +...+.+.....+...++.++.++++||+ |+|+.+..+.+..+++
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~ 307 (444)
T PRK09669 230 QWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVIL 307 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence 344455555555455443334344444444443 23334455556677788899999999999 9999998887665544
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchH-hHhhhhhhHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEA-EKKKKSSFFNWFYF 189 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ 189 (553)
.....+. +. .+.+.+++..++.|++.+...+..+++++|..|.++.+ .+...+..++.+++
T Consensus 308 ~~~~~~~---~~---------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~ 369 (444)
T PRK09669 308 SALIFFI---PP---------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLF 369 (444)
T ss_pred HHHHHHh---Cc---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHH
Confidence 4333322 11 34666777788899999999999999999999743311 11124567888999
Q ss_pred HHHHHHHHhhhhheeecccccc
Q 008792 190 SINIGALVAASCLVWIQTNVGW 211 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~ 211 (553)
...+|..+|+.++|++.+..||
T Consensus 370 ~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 370 AIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999988777666
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.4e-08 Score=99.10 Aligned_cols=177 Identities=12% Similarity=0.042 Sum_probs=143.0
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhc---CCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFEL---NQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
|++|...+........|+..-.-.+.|.+.-+ +.++...|.+.+...+.-.+...+..++.+|+ |.|+.++++..+
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence 56777777777777777777666788876543 34556678888888899999999999999999 999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
+++=..+++++ .+.+.+.+.+.+.++-.+.......-|+++.+|++- .++.+.+
T Consensus 299 ~~iRi~~~~~~--------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v 352 (412)
T PF01306_consen 299 MAIRIIGSGFA--------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLV 352 (412)
T ss_dssp HHHHHHHHHT----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHH
T ss_pred HHHHHHHHhhh--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHH
Confidence 98888888877 357889999999999999999999999999999887 7788887
Q ss_pred -HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhcc
Q 008792 187 -FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGS 233 (553)
Q Consensus 187 -~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~ 233 (553)
++.+..+|..+.+.++|.+.++.|++..|++.+.+.++..+.-.+..
T Consensus 353 ~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l 400 (412)
T PF01306_consen 353 GFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL 400 (412)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence 67889999999999999999999999888877766655544444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=99.01 Aligned_cols=191 Identities=10% Similarity=0.040 Sum_probs=128.4
Q ss_pred CccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 28 TWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
.++.+++.+...++..++-.-........+-.+-|++..++.++.........+..+++.++.||+ |||+.++.+..+.
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM 345 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 345566777777777776554445555556667799999999999999999999999999999999 9999999999988
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHH--hhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLI--ALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
.+..+++.....+.... ..+-.+..+++.++. +++.| ..|..+-+.+|++|++. |..+++
T Consensus 346 ~~~~~~~~~~~~l~~~~-----------~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~------R~aa~s 407 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSF-----------GSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSA------RSAAQS 407 (485)
T ss_pred HHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccc------hHHHHH
Confidence 88887776553222100 000011122333332 22222 35788899999999998 999999
Q ss_pred HHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeec
Q 008792 186 WFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRY 238 (553)
Q Consensus 186 ~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~ 238 (553)
+......+...+-...-..+.+..|- +.|.+-.+..++..+..+...|+.+.
T Consensus 408 ~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 408 VATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 87777766666655555566666654 44555555555555555555555543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.1e-07 Score=94.35 Aligned_cols=162 Identities=15% Similarity=0.182 Sum_probs=131.1
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.+...++..++...+.....+....|.+..+|-++............+..++.++..+|++|+ |+|+++.++.++.++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i 314 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV 314 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence 4455666677777777777778888888888898888888888888888888899999999999 999999999999999
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhh--hhhhHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKK--KSSFFNWF 187 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~ 187 (553)
+.++..+.. . .+.+++++...+.+++.+...+..+++++|..+-.|- ..+. -|..++.+
T Consensus 315 ~~~~~~f~~---~---------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~-~TG~R~eGi~~s~~ 375 (467)
T COG2211 315 GYLLLYFTP---A---------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEW-KTGVRREGIVYSGM 375 (467)
T ss_pred HHHHHHhhc---C---------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHH-HhCCCchhhHHHHH
Confidence 999988872 1 4688888899999999999999999999999874432 1222 35566678
Q ss_pred HHHHHHHHHHhhhhheeecccccc
Q 008792 188 YFSINIGALVAASCLVWIQTNVGW 211 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l~~~~~~ 211 (553)
.+..-+|.+++..+.|++....||
T Consensus 376 tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 376 TFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888888999888888877655554
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-06 Score=82.70 Aligned_cols=155 Identities=20% Similarity=0.172 Sum_probs=97.9
Q ss_pred HHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC
Q 008792 53 LVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNV 132 (553)
Q Consensus 53 l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (553)
...|+.+.+++...+.+.+..+......+...+.|.|+||- |||+..+. +++...+.++..
T Consensus 59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvt----ycitYiLsCiTK-------------- 119 (454)
T KOG4332|consen 59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVT----YCITYILSCITK-------------- 119 (454)
T ss_pred eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceee----ehHHHHHHHHhh--------------
Confidence 44567788999999999988888888899999999999999 99997644 445555555441
Q ss_pred cCCCchhHHHHHHHHHHHhhccccccccccc-ccccCCCCCchHhHhhhhhhHHH-HHHHHHHHHHHhhhhheeecccc-
Q 008792 133 CHPTGLQIAVFFVGLYLIALGTGGIKPCVSS-FGADQFDDYDEAEKKKKSSFFNW-FYFSINIGALVAASCLVWIQTNV- 209 (553)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~g~l~~~~- 209 (553)
+..++.+++++|++-|+..+..+.+..+ +++|.-+++.-..+ =...-|+- ..++..+-++++...+..+.+.+
T Consensus 120 ---hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Feqq-Wls~TFskA~ffgNglvAiiaGlfgn~lvd~~s 195 (454)
T KOG4332|consen 120 ---HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQ-WLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS 195 (454)
T ss_pred ---cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHh-hhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 2356788999999999999887776644 45555433221000 01122222 11233344444445455555544
Q ss_pred -cchhhhHHHHHHHHHHHHHHH
Q 008792 210 -GWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 210 -~~~~~f~i~~~~~~~~~~~~~ 230 (553)
|--.+|-.+++..+++..+.+
T Consensus 196 lGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 196 LGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred cCCCCchHHHHHHHHHHHHHHH
Confidence 445567666666666655444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-07 Score=95.83 Aligned_cols=165 Identities=12% Similarity=-0.025 Sum_probs=116.2
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhh-cCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFE-LNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
.++..+...++......+..++++.|+.+. .+.+....+...+.+.....++.+++|+++||+ ++|+++.++.++.++
T Consensus 233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~ 311 (410)
T TIGR00885 233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA 311 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 345555566666666667778899998653 244545555566667788899999999999999 999998888777777
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
..++..... +.. ......+.|++.+.++|...+...+..+++. +.... ...+
T Consensus 312 ~~ll~~~~~--------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~-~l~~ 363 (410)
T TIGR00885 312 LCLGSIFAG--------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAA-GLVM 363 (410)
T ss_pred HHHHHHHcC--------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHH-HHHH
Confidence 666666541 122 2455667788888888999999999998765 32222 2222
Q ss_pred HHHHHHHHhhhhheeecccc------cchhhhHHHHHHHHHH
Q 008792 190 SINIGALVAASCLVWIQTNV------GWGWGFGIPAVAMAIA 225 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~------~~~~~f~i~~~~~~~~ 225 (553)
+ .+|+++.|.+.|++.|.. +.+..|+++.+..+..
T Consensus 364 ~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 364 A-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred H-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 3 399999999999999853 4778887766554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.8e-05 Score=77.79 Aligned_cols=105 Identities=9% Similarity=0.033 Sum_probs=86.5
Q ss_pred HHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHh
Q 008792 72 VTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIA 151 (553)
Q Consensus 72 ~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 151 (553)
+++-.....+..++++.+.|+. |.|..+.++...+.+--+..... |-+.++..-.+.|
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~---------------------N~y~~yfssallG 113 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP---------------------NSYYLYFSSALLG 113 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc---------------------chHHHHHHHHHhh
Confidence 6667778889999999999999 99999999988777666555443 4667888999999
Q ss_pred hcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhhee
Q 008792 152 LGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVW 204 (553)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~ 204 (553)
+|.+..+..--.++++...++. +.+..++.+...+.+-.+|..+.-.
T Consensus 114 ~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 114 FGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred hhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhhee
Confidence 9999999999999999999887 8888888888888777777555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-06 Score=90.15 Aligned_cols=145 Identities=10% Similarity=-0.033 Sum_probs=101.0
Q ss_pred HHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccC
Q 008792 43 RLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122 (553)
Q Consensus 43 ~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~ 122 (553)
...........+.|+++.+|.+..+.++.......+..++.++.+++.||+ +|+... +.....++............
T Consensus 220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~ 296 (394)
T PRK11652 220 LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFGV 296 (394)
T ss_pred HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhcc
Confidence 333333445567788888999999999888888888888999999999998 743332 22222222222111100000
Q ss_pred CCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhh
Q 008792 123 LKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCL 202 (553)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 202 (553)
.+.+.+....++.+++.+...|...++..|.+|+ + +++..++.+...++|+.+++.++
T Consensus 297 ---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 297 ---------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567778888999999999999988888874 4 78889999999999999999999
Q ss_pred eeecccccch
Q 008792 203 VWIQTNVGWG 212 (553)
Q Consensus 203 g~l~~~~~~~ 212 (553)
+.+.....+.
T Consensus 355 ~~~~~~~~~~ 364 (394)
T PRK11652 355 AMLPQTGQFS 364 (394)
T ss_pred HHccCCchHH
Confidence 9887654444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.4e-08 Score=98.61 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=114.5
Q ss_pred ccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccch
Q 008792 358 LSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSI 437 (553)
Q Consensus 358 ~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (553)
++....+.-++..|+.+. +.+|.+++ +.+.+|..+..++.+..++. ..+
T Consensus 73 l~~vf~v~~~i~sPl~gy----LadryNR~-------~v~~vG~~iW~~Av~~~~fs--------------------~~F 121 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGY----LADRYNRK-------RVIAVGIFIWTLAVFASGFS--------------------NHF 121 (493)
T ss_pred hhHHHHHHHHHHHHHHHH----HHhhcCcc-------eEEeeHHHHHHHHHHHHHHH--------------------HHH
Confidence 344444555566777777 67886554 67899999999999988875 356
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCc
Q 008792 438 FWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGN 517 (553)
Q Consensus 438 ~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~ 517 (553)
|.+.+.-.+.|+||....|..++++.+.+|++.|+++.+++++..-+|..+|-...+.+.+... .|
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W--------- 187 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW--------- 187 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce---------
Confidence 7777788999999999999999999999999999999999999999999888776666655432 14
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008792 518 LHYFFWLLALLSVLNLGVYLMVARCYTYKK 547 (553)
Q Consensus 518 ~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~ 547 (553)
...|+..++++++.+++.+++.++.+++.
T Consensus 188 -r~af~~~avl~vi~~~L~~~f~~eP~rga 216 (493)
T KOG1330|consen 188 -RWAFRGSAVLGVIVGLLVFLFVREPERGA 216 (493)
T ss_pred -EEEEEeehHHHHHHHHHHHhhccCccccc
Confidence 22467889999999999999998886543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.6e-06 Score=71.18 Aligned_cols=131 Identities=18% Similarity=0.295 Sum_probs=91.7
Q ss_pred hhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHH
Q 008792 363 TISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVP 442 (553)
Q Consensus 363 ~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 442 (553)
.+..++..++.++ +.||. ++++.+..+..+..++.+..... .+.+....
T Consensus 8 ~~~~~~~~~~~g~----~~d~~-------g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 56 (141)
T TIGR00880 8 ALGQLIYSPLSGL----LTDRF-------GRKPVLLVGLFIFVLSTAMFALS--------------------SNITVLII 56 (141)
T ss_pred hhHHHHHHhhHHH----HHhhc-------chhHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHH
Confidence 4445555666555 34443 23355666666666666555443 24556666
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHH
Q 008792 443 QYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFF 522 (553)
Q Consensus 443 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f 522 (553)
..++.+++.....+....++.|..|++.|+++.++.++...+|..+++.+.+.+.+.. +....|
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~ 120 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GWRAPF 120 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------chHHHH
Confidence 7888999999999999999999999999999999999999999999999998775421 123456
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008792 523 WLLALLSVLNLGVYLMVA 540 (553)
Q Consensus 523 ~i~~~~~~v~~~~~~~~~ 540 (553)
++.+.+.++..+..+...
T Consensus 121 ~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 121 LFLAILALAAFILLAFLL 138 (141)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 666666666655555443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-05 Score=80.21 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=115.6
Q ss_pred HHHHHHHhhhh-cCCchhhhh-hHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008792 50 NTNLVNYLRFE-LNQGNVQAV-NNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLC 127 (553)
Q Consensus 50 ~~~l~~yl~~~-l~~s~~~~~-~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 127 (553)
-|++.+|+.+. .|++..|.. .+.-...-...+..++...+.|.. |.|++++++.+...+...++....
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~--------- 92 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT--------- 92 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC---------
Confidence 46788899887 899998876 444555557778888899999999 999999999888888887777662
Q ss_pred CCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecc
Q 008792 128 DKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQT 207 (553)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~ 207 (553)
+...+-+.-++.|++.+. ..+..+++=...|+++ -.++.+....+.-+|-.++..++-.+..
T Consensus 93 -----------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 93 -----------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred -----------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677778888888876 4555677777777766 6667777778888888888777765544
Q ss_pred --cccchhhhHHHHHHHHHHHHHHHhc
Q 008792 208 --NVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 208 --~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
..++...++++.....++++..++.
T Consensus 155 ~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 155 FGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456777777777666666655444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=6e-06 Score=88.40 Aligned_cols=159 Identities=13% Similarity=0.067 Sum_probs=97.0
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGM 111 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~ 111 (553)
....+...++..............|.+..++.. ...+.+...+.++..++.+++++++||+ |+|+++..+.....+..
T Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~ 307 (460)
T PRK11462 230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS 307 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 334444444554544444444444444444433 3345566777888899999999999999 99888775554444433
Q ss_pred HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhh--hhhHHHHHH
Q 008792 112 TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK--SSFFNWFYF 189 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~ 189 (553)
.+..+. +. .+...+++..++.|++.+...+..+++++|..+.++ -+.+.| +..++...+
T Consensus 308 ~~~~~~---~~---------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e-~~tG~r~~g~~~a~~~f 368 (460)
T PRK11462 308 LAMFFV---PM---------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGE-WCNGKRLTGISFAGTLF 368 (460)
T ss_pred HHHHHh---ch---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH-HhcCCCchHHHHHHHHH
Confidence 333222 11 123333444556677777777777888999887432 112223 344566778
Q ss_pred HHHHHHHHhhhhheeecccccc
Q 008792 190 SINIGALVAASCLVWIQTNVGW 211 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~ 211 (553)
...+|..+|+.++|++.+..||
T Consensus 369 ~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 369 VLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999888877655555
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=77.15 Aligned_cols=139 Identities=12% Similarity=0.106 Sum_probs=103.5
Q ss_pred HHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008792 45 AYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLK 124 (553)
Q Consensus 45 ~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (553)
..|.+ +...+.+++.+|.|..|...+...-.++..+ .++.|.+.|++ |.+.++.+|.+...+|..++.+..+-..
T Consensus 17 t~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i-- 91 (250)
T PF06813_consen 17 TTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRI-- 91 (250)
T ss_pred cccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcc--
Confidence 34443 4455668999999999999998888888886 58899999999 9999999999999999988887633111
Q ss_pred CCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhhee
Q 008792 125 PLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVW 204 (553)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~ 204 (553)
+..+.+.+.+...+.+.+.....+.+.....+.||+ + ||++.++.-....+++.+-..+...
T Consensus 92 -----------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 92 -----------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred -----------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHH
Confidence 123567777777777777776666666666788985 5 9999998666666666554444443
Q ss_pred ec
Q 008792 205 IQ 206 (553)
Q Consensus 205 l~ 206 (553)
+.
T Consensus 154 ~f 155 (250)
T PF06813_consen 154 FF 155 (250)
T ss_pred Hc
Confidence 33
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.1e-06 Score=90.96 Aligned_cols=184 Identities=10% Similarity=-0.043 Sum_probs=125.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhh----hhhHHHHHHHHHhhhhhhHH----HHhhhccchHHHH--HHH
Q 008792 34 YILGNECCERLAYYGINTNLVNYLRFELNQGNVQ----AVNNVTNWSGTCYVMPLIGA----FLADAYLGRYWTI--ASF 103 (553)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~----~~~~~~~~~~~~~~~~~~~G----~laDr~~Gr~~~~--~~~ 103 (553)
.++....+....+.-..+.++.|..+..+.+... .+++.+...+...+..|+.. ++.||-.+.+... .+|
T Consensus 276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G 355 (475)
T TIGR00924 276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG 355 (475)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 3344444455555555666777776654443222 55677777777777776655 4455421333333 678
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhh
Q 008792 104 SIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSF 183 (553)
Q Consensus 104 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 183 (553)
.++.+++....++...... ++...+++++++..++.++|.....|...+++.+..|++. |+++
T Consensus 356 ~~l~~~~~~~~~~~~~~~~-----------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~ 418 (475)
T TIGR00924 356 MLFCGASFLTFAASIWFAD-----------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQM 418 (475)
T ss_pred HHHHHHHHHHHHHHHhhcC-----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHH
Confidence 8888888777765311110 0012468889999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 184 FNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 184 ~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
++++.....+|..+++.+........+|...|...++..++..+.++...|
T Consensus 419 ~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 419 LGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887766667887776666555555544444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.9e-06 Score=85.85 Aligned_cols=175 Identities=17% Similarity=0.050 Sum_probs=113.0
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.++......++.+...+.+..+.|.|+++.+|.+..+.++.......+..++..+.+++.++. ++++.......+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 4566666667777777777778889999999999999999988777888888888888876555 444444333333344
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+..+......... .+....++..++.++|.+...|...+.. +.+.+.+ +|++.++++.
T Consensus 297 g~~l~~~~~~~~~---------------~~~~~~~~~~~l~~~G~~~~~p~~~~~a--l~~~~~~-----~G~a~a~~~~ 354 (413)
T PRK15403 297 GLALLIVGNLLWP---------------HVWLWSVLGTSLYAFGIGLIFPTLFRFT--LFSNNLP-----KGTVSASLNM 354 (413)
T ss_pred HHHHHHHHHHHcc---------------ccHHHHHHHHHHHHHHHHHHhHHHHHHH--hccCCCC-----CcHHHHHHHH
Confidence 4433332210000 1233456677788888888888776422 2222211 6777888888
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHH
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVS 228 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~ 228 (553)
....+..+++..++++..+ +-.+.|....++..+.+..
T Consensus 355 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~ 392 (413)
T PRK15403 355 VILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVVF 392 (413)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHH
Confidence 8888888888888877654 4455665555444444333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.4e-06 Score=83.17 Aligned_cols=175 Identities=17% Similarity=0.155 Sum_probs=141.3
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMT 112 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 112 (553)
...+...+...+++.+--..+=+|-.+.+|++..+...+...+..+..++..+.|++..|-.++++...++.....++..
T Consensus 211 ~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 211 RRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred hHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 34455555666666666777888999999999999999999999999999999999988554888888888888888777
Q ss_pred HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 113 ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
+..++... .+.+.+..+.++.|++.|.+....-+.+-|+..+++ .|..+|.+.....
T Consensus 291 lii~a~~~-----------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA 347 (403)
T PF03209_consen 291 LIILAGPL-----------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQA 347 (403)
T ss_pred HHHHHHhc-----------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHH
Confidence 76665322 347788999999999999999999999999999888 8999999999999
Q ss_pred HHHHHhhhhheeecc----------cccchhhhHHHHHHHHHHHHHHH
Q 008792 193 IGALVAASCLVWIQT----------NVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~----------~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
+...+|..++|.+.| ..+|...|.+-++..++++.+..
T Consensus 348 ~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 348 IARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887643 23577777777776666665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-08 Score=106.16 Aligned_cols=187 Identities=16% Similarity=0.033 Sum_probs=115.6
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
+.....+...++.....+....+..+++.+..+.+.. -.......+...++.+++.++.||+ |||+.++.+..+.++
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~ 328 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI 328 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence 3445555555555555444444444555556666665 2223344456777888888999999 999999999888887
Q ss_pred HHHHHH-hhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 110 GMTILT-MSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 110 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
+...++ ....... .+...+...+............+..+..+.+.+|.+|.+. |+++.++.+
T Consensus 329 ~~~~~~~~~~~~~~-----------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~ 391 (451)
T PF00083_consen 329 CSLILGIIFFLGVS-----------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSY 391 (451)
T ss_pred cccccccccccccc-----------cccccccccceeeeeccccccccccccccccccccccccc------ccccccccc
Confidence 777665 1100010 0000112222222222222222445677788999999998 999999988
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhcccee
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLY 236 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 236 (553)
....+++.++|.+...+.+..+-...+.+.+...++..+..+...|+.
T Consensus 392 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 392 AVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 888999999999888888776634445555555555555555555544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-06 Score=86.40 Aligned_cols=174 Identities=11% Similarity=0.026 Sum_probs=125.3
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccc--hHHHHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLG--RYWTIASFSIIYVI 109 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--r~~~~~~~~~~~~i 109 (553)
++...+.....+.+....-+-++.+..+++..+..+.|....-.++...++..+.|.++||+ + |...-..+++...+
T Consensus 272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~ 350 (464)
T KOG3764|consen 272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGV 350 (464)
T ss_pred HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHH
Confidence 45555666666666666777788888899986667999998889999999999999999999 8 54444444444444
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
.+....+. .++..+.+-+...+++.+...++.......+.+.++..+-.-.|..+++...
T Consensus 351 ~~~~iP~~--------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~ 410 (464)
T KOG3764|consen 351 SSGPIPFA--------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADA 410 (464)
T ss_pred HhchhHhh--------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHH
Confidence 44444444 3466677777777777777766665555555543321100016888899999
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHH
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAV 226 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~ 226 (553)
+..+|..+||.++|.+.+..|++|...+.+...++-.
T Consensus 411 a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 411 AFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA 447 (464)
T ss_pred HHHHhhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988766665544443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=77.87 Aligned_cols=147 Identities=17% Similarity=0.266 Sum_probs=109.3
Q ss_pred hHHHHHHHhhhhcCCch--hhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008792 49 INTNLVNYLRFELNQGN--VQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPL 126 (553)
Q Consensus 49 ~~~~l~~yl~~~l~~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 126 (553)
.....+.+. ..++.+. .+.++..+.+.+...++.++.|+++||+ |||+.+..+.....++..+..+..+
T Consensus 21 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~------- 91 (338)
T COG0477 21 LSPALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN------- 91 (338)
T ss_pred HHHHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc-------
Confidence 334444443 3444444 4788889999999999999999999999 9998888887765555555555421
Q ss_pred CCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCC-CchHhHhhhhhhHHHHHH-HHHHHHHHhhhhhee
Q 008792 127 CDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDD-YDEAEKKKKSSFFNWFYF-SINIGALVAASCLVW 204 (553)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~i~g~ 204 (553)
...+.+++.|.++|++.+...+...+++.|.+|+ ++ |+...+.... ...+|..++|.+++.
T Consensus 92 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T COG0477 92 -----------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGL 154 (338)
T ss_pred -----------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2477888999999999999999999999999997 34 8888888777 577888888877776
Q ss_pred eccc--ccchhhhHHHHHH
Q 008792 205 IQTN--VGWGWGFGIPAVA 221 (553)
Q Consensus 205 l~~~--~~~~~~f~i~~~~ 221 (553)
+... .+|++.|.+....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 155 LLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHhcchHHHHHHHHHH
Confidence 6543 5788755544433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00026 Score=73.06 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=52.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008792 435 MSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIV 496 (553)
Q Consensus 435 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i 496 (553)
.+.|.+++..+..|+..+.........+.+..|++.|..++|.......+|-.++..+.-.+
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35666667778888888888888888899999999999999999999999998887776544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.1e-06 Score=83.32 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=124.4
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc---cchHHHHHHH-HH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY---LGRYWTIASF-SI 105 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~~~-~~ 105 (553)
+.+.....+.+...+++..=..++++|++ .+|.+-.-.+.+-.+..+...+.+|+.|..+||- +||||.++.. ..
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 55677777888888888777888999975 6899999999999999999999999999999975 4888777654 45
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhh-hH
Q 008792 106 IYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS-FF 184 (553)
Q Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~ 184 (553)
..+++..+...++.+... .||+-..|.. ......++++..+.=+.....+..+-++++|+..+++ +.+ +.
T Consensus 111 ~i~~~l~Lig~aaDig~~--lgd~~~~~~~-~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~------~~~~An 181 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLL--LGDNERKPVK-PRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA------KKTRAN 181 (498)
T ss_pred HHHHHHhhhhhHhhhhHH--hcCCcccccc-hHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh------hhhccc
Confidence 777777777766543321 2444333322 2345667777777778887888888999999997665 333 88
Q ss_pred HHHHHHHHHHHHHhhhhhee
Q 008792 185 NWFYFSINIGALVAASCLVW 204 (553)
Q Consensus 185 ~~~~~~~~~G~~~~~~i~g~ 204 (553)
+++.....+|+.+|..++++
T Consensus 182 s~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 182 SVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred hhHHHHHHhcceeeeecccc
Confidence 89999999999998777764
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.4e-06 Score=87.93 Aligned_cols=173 Identities=9% Similarity=-0.106 Sum_probs=138.5
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 008792 34 YILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTI 113 (553)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~ 113 (553)
+.++..+......-.+.+++--++ ++++.....-|.....-.++-.+.-++.++|..|+ |+-+++.+++...++=.+.
T Consensus 375 lff~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~ 452 (618)
T KOG3762|consen 375 LFFFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLY 452 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHH
Confidence 445556666666666677775555 46676666677666666777888889999999999 9999999999888887777
Q ss_pred HHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH-HHHHHH
Q 008792 114 LTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW-FYFSIN 192 (553)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ 192 (553)
.+.. +|.|..+..-+++|+..+.++.++.+|+.+..|++- |.++-++ ....-.
T Consensus 453 ~S~L--------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~G 506 (618)
T KOG3762|consen 453 YSYL--------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHG 506 (618)
T ss_pred HHHh--------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcc
Confidence 7766 468888889999999999999999999999999998 8888887 444568
Q ss_pred HHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 193 IGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
+|-.+|.+++|.+.+.+|-+..|.+.++..++.++.+....+
T Consensus 507 lG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 507 LGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred cCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 899999999999999999998888887777666666554443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=79.78 Aligned_cols=157 Identities=17% Similarity=0.101 Sum_probs=120.2
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|.++...+..|+.-..=-.+-++++.|+.+..|++..++...++.+..+.++|..++-++-.|+ ...|.+.+..++..+
T Consensus 236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~il 314 (422)
T COG0738 236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAIL 314 (422)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 4566777777777766667789999999888999999999999999999999999999999999 888887776654444
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
-++...+.. +.. -+.+.++.|+.++.++|.+.+...+..|.+.+ .+.+ .-.
T Consensus 315 l~~~~~l~~--------------------g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~---~l~ 365 (422)
T COG0738 315 LLLAVALIG--------------------GVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG---LLV 365 (422)
T ss_pred HHHHHHHhc--------------------ChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce---eee
Confidence 444444441 222 34456678999999999999999999994432 2222 223
Q ss_pred HHHHHHHHhhhhheeecccccchhhhH
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFG 216 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~ 216 (553)
+.-+|+++-|.+.|++.+..|-+..+.
T Consensus 366 maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 366 MAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred eheecchHHHHHHHHHHHhhhhHHHHH
Confidence 445899999999999999998887765
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=61.60 Aligned_cols=68 Identities=21% Similarity=0.074 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHH
Q 008792 36 LGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSI 105 (553)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~ 105 (553)
-...++...+...+.++++.|++ +.|+++.+.|.+.++..+...+++|+.|+++||+ +|++.++....
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~ 73 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHH
Confidence 34455566666678899999987 4899999999999999999999999999999999 88777766544
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.6e-06 Score=86.92 Aligned_cols=163 Identities=15% Similarity=0.099 Sum_probs=108.5
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhh----ccchHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADA----YLGRYWTIASFSII 106 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Gr~~~~~~~~~~ 106 (553)
.+|...+..++.....+++..|+|.|+++..|.|..+++++...+.++..++.+++|+++|| . .+|..+.....+
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCL 352 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 57899999999999999999999999998677999999999999999999999999999999 5 677776666655
Q ss_pred HHHHH-HHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 107 YVIGM-TILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 107 ~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
+.+.. ..+..... ......+.+....+.....+++..-..+....+. +|-+..+
T Consensus 353 ~~~~g~~~l~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~~~~~ 407 (495)
T KOG2533|consen 353 YAIIGAISLLAAAV--------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KALTTVS 407 (495)
T ss_pred HHHHHHHHHHhhcc--------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhHHHHh
Confidence 44444 33332211 1112222222333344444455555555554443 1555566
Q ss_pred HHHHHHHHHHHHhhh-hheeecccccchhhhHHHH
Q 008792 186 WFYFSINIGALVAAS-CLVWIQTNVGWGWGFGIPA 219 (553)
Q Consensus 186 ~~~~~~~~G~~~~~~-i~g~l~~~~~~~~~f~i~~ 219 (553)
.+..+.+.++.++|. .-+.....++|...|+...
T Consensus 408 ~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 408 AIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred hhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 655555555554444 3445555678888885443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=85.27 Aligned_cols=205 Identities=10% Similarity=-0.030 Sum_probs=141.8
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhh-hcCCchh------h----hhhHHHHHHHHHhhhhhhHHHHhhhcc
Q 008792 26 TGTWKACPYILGNECCERLAYYGINTNLVNYLRF-ELNQGNV------Q----AVNNVTNWSGTCYVMPLIGAFLADAYL 94 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~s~~------~----~~~~~~~~~~~~~~~~~~~G~laDr~~ 94 (553)
+..+|.++.++.+.++..++++.+..+...|+.+ .++-++. + ..+....+++...+.+++--++.+|+
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~- 332 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW- 332 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 4567889999999999999999988888888764 3443221 1 12344455556667777788889999
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC-CCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCC
Q 008792 95 G-RYWTIASFSIIYVIGMTILTMSASVHGLKPLCD-KRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDY 172 (553)
Q Consensus 95 G-r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 172 (553)
| ||++..++.++.++++....+..+.++-.+.-+ +.....+.....+..++...+.|+..+.......+++++..+++
T Consensus 333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 8 577778998888888888776533111000000 00000011112366777788899999999999999999999964
Q ss_pred chHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccccc--chhhhHHHHHHHHHHHHHHHhccce
Q 008792 173 DEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVG--WGWGFGIPAVAMAIAVVSFFAGSRL 235 (553)
Q Consensus 173 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~--~~~~f~i~~~~~~~~~~~~~~~~~~ 235 (553)
.++ .|..+|+.|.+..+...+..+..|.+.+.+| -.+.+.+.++.++++.+..++..|+
T Consensus 413 ~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 413 GAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred CCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 421 6999999999999999999887777554443 4566778888888877776665554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0016 Score=68.32 Aligned_cols=189 Identities=8% Similarity=-0.123 Sum_probs=109.6
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|..+.+...+++.++.--++....+.|+.+-+.-+.--.+.....-.+...+..+.-|.+.||. .|.+++..+.+..-+
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL 80 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence 3456677778888888777777788888777655555555555556778888999999999999 999988777654333
Q ss_pred HH----HHHHhhhcccCCCCCCCCCCCcCC-CchhHHHHHHHHHHHh-hcccccccccccccccCCCCCchHhHhhhhhh
Q 008792 110 GM----TILTMSASVHGLKPLCDKRNVCHP-TGLQIAVFFVGLYLIA-LGTGGIKPCVSSFGADQFDDYDEAEKKKKSSF 183 (553)
Q Consensus 110 ~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 183 (553)
+. .+.......+. -+. +......++....+.| +..=.......+.=-|+...=..++...+.+.
T Consensus 81 sv~~s~~~~~~l~~~~~----------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~ 150 (432)
T PF06963_consen 81 SVAASCALFLLLLSYPS----------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARM 150 (432)
T ss_pred HHHHHHHHHHHHHhCCc----------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHH
Confidence 32 22222211111 000 1112222222222222 22222222223333444321111111125666
Q ss_pred HHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHH
Q 008792 184 FNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSF 229 (553)
Q Consensus 184 ~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~ 229 (553)
.+.+.-.=.+.-++||++.|.+....+......+.++..++++..-
T Consensus 151 NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vE 196 (432)
T PF06963_consen 151 NATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVE 196 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 6666666677899999999999888888877776666666666543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3e-05 Score=83.62 Aligned_cols=146 Identities=10% Similarity=-0.034 Sum_probs=101.6
Q ss_pred HHHHHHHhHHHHHHHhhhhcCCch----hhhhhHHHHHHHHHhhhhhhHHHHhhhccchHH-------HHHHHHHHHHHH
Q 008792 42 ERLAYYGINTNLVNYLRFELNQGN----VQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYW-------TIASFSIIYVIG 110 (553)
Q Consensus 42 ~~~~~~~~~~~l~~yl~~~l~~s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-------~~~~~~~~~~i~ 110 (553)
....+......++.|.++..+.+. ....++.+...+...+..|+.|++.||+ +||+ .+.+|.++.+++
T Consensus 281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~ 359 (489)
T PRK10207 281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG 359 (489)
T ss_pred HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence 344444444667777764332211 1234455556667778889999999999 8887 377777777777
Q ss_pred HHHHHhhhc-ccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 111 MTILTMSAS-VHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 111 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
.+..+.... ... .+...+.+.++...+++|+|.++..|...+++.+..|++. ++.+++++++
T Consensus 360 ~~~~~~~~~~~~~-----------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g~~~l 422 (489)
T PRK10207 360 FLTAAAAGMWFAD-----------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILGMWFL 422 (489)
T ss_pred HHHHHHHHHhhcC-----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHHHHHH
Confidence 654432100 000 0011346777788889999999999999999999999988 9999999999
Q ss_pred HHHHHHHHhhhhheee
Q 008792 190 SINIGALVAASCLVWI 205 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l 205 (553)
..++|..+|..++...
T Consensus 423 ~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 423 TQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999988877544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.3e-05 Score=82.02 Aligned_cols=175 Identities=13% Similarity=0.040 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhHHHHHHHhhh--hcCCch------hhhhhHHHHHHHHHhhhhhhH----HHHhhhccchHHHHHHHHHH
Q 008792 39 ECCERLAYYGINTNLVNYLRF--ELNQGN------VQAVNNVTNWSGTCYVMPLIG----AFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~--~l~~s~------~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Gr~~~~~~~~~~ 106 (553)
.+.....+|.+..-.+.++.. ..+.+. ...++..+...+...+..++. +++.||+ +..+.+.++.++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence 445555666666666666443 111111 124455566665666666666 6666666 677888899999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.+++.+.+++.....+ .| ...+.++++...+++++|.....|...+++.+..|++. |++++|.
T Consensus 360 ~~l~f~~l~~~~~~~~---------~~--~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~ 422 (500)
T PRK09584 360 CSGAFLVLPLGAKFAN---------DA--GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGS 422 (500)
T ss_pred HHHHHHHHHHHHHhcC---------CC--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHH
Confidence 9999988877643221 00 11345678889999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHHhhhhheeec----------ccccchhhhHHHHHHHHHHHHHHHh
Q 008792 187 FYFSINIGALVAASCLVWIQ----------TNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~----------~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
+.....+|..++..+.+... ...++.+.|...++..++..++++.
T Consensus 423 ~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 423 WFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777766654211 1123566676555544433333333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.3e-06 Score=87.49 Aligned_cols=143 Identities=8% Similarity=-0.121 Sum_probs=111.8
Q ss_pred hhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCc
Q 008792 58 RFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTG 137 (553)
Q Consensus 58 ~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (553)
.+.+|.++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++........+.+... -..
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~----------~gi 348 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA----------FGI 348 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc----------cCC
Confidence 457899999999999999999999999999999999 999999999988888776544221111100 000
Q ss_pred hhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccccc-----ch
Q 008792 138 LQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVG-----WG 212 (553)
Q Consensus 138 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~-----~~ 212 (553)
.+.+.+....++.+++.+........++.+..|++. +++.+++.+...++|..+++.+++++.+..| ++
T Consensus 349 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~ 422 (468)
T TIGR00788 349 SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSN 422 (468)
T ss_pred CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 112334455667888888888888999999999998 9999999999999999999999999988777 55
Q ss_pred hhhHH
Q 008792 213 WGFGI 217 (553)
Q Consensus 213 ~~f~i 217 (553)
..+.+
T Consensus 423 ~~~~~ 427 (468)
T TIGR00788 423 NLWLL 427 (468)
T ss_pred chHHH
Confidence 44443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.1e-05 Score=82.78 Aligned_cols=179 Identities=16% Similarity=0.050 Sum_probs=125.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhh--------HHHH-HHHHHhhhhhhHHHHhhhccchHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVN--------NVTN-WSGTCYVMPLIGAFLADAYLGRYWTI 100 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~--------~~~~-~~~~~~~~~~~~G~laDr~~Gr~~~~ 100 (553)
|.+.-....+|....++|+...+...-++ .++..+.+... ...+ ...+...+..+...+.|++ |||+..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 55666777778888888887666655543 33332222111 1122 2233344778888899999 999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhh
Q 008792 101 ASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK 180 (553)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 180 (553)
+-+.+++++..+.++..-+ . .......+...-+.+.+++-+-......+.+|.||.+. |
T Consensus 382 ~~GF~~~~i~~~~~~~~y~------------~---~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv------R 440 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYN------------Q---LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV------R 440 (538)
T ss_pred HhhHHHHHHHHHHHcCCcc------------c---ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH------h
Confidence 9999999998888886622 0 01122223333334455566666677788899999998 9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhheeecc-----cccchhhhHHHHHHHHHHHHHHHh
Q 008792 181 SSFFNWFYFSINIGALVAASCLVWIQT-----NVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 181 ~~~~~~~~~~~~~G~~~~~~i~g~l~~-----~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
++..|+.....-.|+++|...-+++.+ ..+.+..|++.+..++++.+..++
T Consensus 441 ~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 441 STCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred hhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 999999999999999999999999988 788999999888887777665544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00012 Score=81.40 Aligned_cols=172 Identities=12% Similarity=0.093 Sum_probs=117.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHH-HHhhhhhhHHHHhhhccc--hHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSG-TCYVMPLIGAFLADAYLG--RYWTIASFSII 106 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~G--r~~~~~~~~~~ 106 (553)
|.++...+..++....++++..++|.|+++++|+++.+++++.+...+ +..++.+++|+++||+ + .|+.+..+.+.
T Consensus 330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~ 408 (633)
T TIGR00805 330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICL 408 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHH
Confidence 456778888889999999999999999999999999999999887665 5689999999999999 7 45677777666
Q ss_pred HHHHHHHHHh---h--------------------------------hcccCCCCCCCC----------------------
Q 008792 107 YVIGMTILTM---S--------------------------------ASVHGLKPLCDK---------------------- 129 (553)
Q Consensus 107 ~~i~~~~~~~---~--------------------------------~~~~~~~~~~~~---------------------- 129 (553)
..++.++... . .......|+|+.
T Consensus 409 ~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~ 488 (633)
T TIGR00805 409 STLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSN 488 (633)
T ss_pred HHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCc
Confidence 6665444221 0 000112223322
Q ss_pred --CC----------------CcCCCchh-HHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 130 --RN----------------VCHPTGLQ-IAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 130 --~~----------------~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
|. .|++.=.+ +..+++..++..+..+.........+.+.+|+++ |.-+.|+..+.
T Consensus 489 ~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~ 562 (633)
T TIGR00805 489 MVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLC 562 (633)
T ss_pred ceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHH
Confidence 00 12211012 3334444444445455555555677888999998 99999996666
Q ss_pred H-HHHHHHhhhhheeeccc
Q 008792 191 I-NIGALVAASCLVWIQTN 208 (553)
Q Consensus 191 ~-~~G~~~~~~i~g~l~~~ 208 (553)
. -+|.+-+|++-|+++|.
T Consensus 563 ~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 563 MRVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHHhcCCChhHHHhhhhhc
Confidence 5 55888899998888774
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00019 Score=78.01 Aligned_cols=195 Identities=12% Similarity=-0.023 Sum_probs=109.8
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
..+|.....+....+..++-+-...+....+-+..+.+... ........+...++..++.++.||+ |||+.++.+...
T Consensus 291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 34555666666666666554433333333334455665443 4555666778888888889999999 999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
+.++.++++.......... .|.. ......+....+.......+..|..+.+.+|.+|.+- |+++.++
T Consensus 369 m~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~~s~ 435 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYP------NSSK-GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKGASL 435 (513)
T ss_pred HHHHHHHHHHHHHHhccCC------Cccc-chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------HhhhHHH
Confidence 9999998886633221000 0111 1122223333333334444455777788999999988 8888887
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHH-HHHhcccee
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVV-SFFAGSRLY 236 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~-~~~~~~~~~ 236 (553)
......+...+-......+.+..++...|.+......+... ..+...|+.
T Consensus 436 ~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 436 AVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET 486 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence 54444443332222222222222233444444444444444 344444443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00065 Score=72.79 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChh--h
Q 008792 393 QLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDA--M 470 (553)
Q Consensus 393 ~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~--~ 470 (553)
+++.+..|.++..++.+.+.... .....+.....+..+|.+...+...+++.|.+|++ .
T Consensus 75 rrr~iliG~il~~lg~lll~~~~-------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~ 135 (493)
T PRK15462 75 NRMAVMLGALLMAIGHVVLGASE-------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR 135 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhh-------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc
Confidence 33567788888888776554311 11122333444555666677777788999999875 7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 008792 471 RSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVAR 541 (553)
Q Consensus 471 rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~ 541 (553)
|+++.+++.....+|+.++|.+.+++.+.. +.+..|.+.++..+++.+.++...+
T Consensus 136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~~~F~iaaigm~l~li~~~~~~~ 190 (493)
T PRK15462 136 RDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWAMGFGLAAVGMIAGLVIFLCGNR 190 (493)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999875422 2345677766666666555554443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0015 Score=68.83 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=81.4
Q ss_pred hhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHH
Q 008792 365 SVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQY 444 (553)
Q Consensus 365 ~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 444 (553)
...+...+.+. +.+|+ +.++.+..+++..++..+..++. .+.+.+.+.-
T Consensus 74 sYal~qIp~Gl----LaDrl-------G~K~vL~l~~l~Wsl~t~L~~fa--------------------~Sl~~L~i~R 122 (511)
T TIGR00806 74 SHLAVLVPVFL----LTDYL-------RYKPVLVLQALSFVCVWLLLLLG--------------------TSVWHMQLME 122 (511)
T ss_pred HHHHHHHHHHH----HHHHh-------CchHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHH
Confidence 33444444444 46664 34467888888888888877775 3567788889
Q ss_pred HHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008792 445 FIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIV 496 (553)
Q Consensus 445 ~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i 496 (553)
+++|++++..+ ....++++.+|++.|+++.|..+....+|.++++.+.+++
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 8899999999999999999999999999999999999884
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0096 Score=60.13 Aligned_cols=160 Identities=11% Similarity=0.069 Sum_probs=88.3
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhh-----hccchHHHH
Q 008792 26 TGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLAD-----AYLGRYWTI 100 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laD-----r~~Gr~~~~ 100 (553)
++..+++..+.+....... -++.....|..++ .-|.|-++.+.....+ --+-.-+++..+.| |+ ||||.-
T Consensus 27 ~~d~~~illLl~LYllQGi-P~GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-GrrksW 101 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGI-PLGLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKSW 101 (510)
T ss_pred hhhhhhHHHHHHHHHHcCC-chhHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccce
Confidence 3445566666665555544 3455565555554 4566665555332221 22344567888888 88 998865
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCC-CchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhh
Q 008792 101 ASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHP-TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKK 179 (553)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (553)
++- .-+.+|.+++.++...+. --=++ ...+...+....++.-+..+.--.++......+..+++
T Consensus 102 vvp-~q~llG~~mllLs~~v~~--------~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~------ 166 (510)
T KOG3574|consen 102 VVP-CQYLLGLFMLLLSYLVDR--------GLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN------ 166 (510)
T ss_pred eee-hHHHHHHHHHHHhhCCCc--------ccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh------
Confidence 543 223344444444421111 00001 12233334334445555555555566666677777777
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhheee
Q 008792 180 KSSFFNWFYFSINIGALVAASCLVWI 205 (553)
Q Consensus 180 r~~~~~~~~~~~~~G~~~~~~i~g~l 205 (553)
.|-+...+..+.+.|.++|-.+.-.+
T Consensus 167 lgyaST~q~Vg~~~GyfL~~~ifLaL 192 (510)
T KOG3574|consen 167 LGYASTCQSVGQTAGYFLGNVVFLAL 192 (510)
T ss_pred cCchhHHHHHHHhhhHHhhcceeeEe
Confidence 78887788888888888876554333
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.035 Score=59.10 Aligned_cols=155 Identities=13% Similarity=0.065 Sum_probs=97.7
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCc-----hhhhhhHHHHHHHHHhhh-hhhHHHHhhhccchHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQG-----NVQAVNNVTNWSGTCYVM-PLIGAFLADAYLGRYWTIAS 102 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s-----~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Gr~~~~~~ 102 (553)
+|+++......|+....|+.+- -++|.+..+ .+...++-+...+...+. .++-+++++|+ +|++.+..
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 3556666666666666665332 257777553 345566655554544444 88999999999 99998888
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCC----------------------chhHHHHHHHHHHHhhccccccc-
Q 008792 103 FSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPT----------------------GLQIAVFFVGLYLIALGTGGIKP- 159 (553)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~g~~~~~~~~- 159 (553)
....+.....+.++... |. +...|++ .+....+++ ...+-.....+
T Consensus 80 ~~~~F~~~f~lF~~vl~-p~-------~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv---~~elw~~~vvS~ 148 (472)
T TIGR00769 80 VISPFLGFFALFAFVIY-PL-------SDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV---MAELWGSVVLSL 148 (472)
T ss_pred HHHHHHHHHHHHHHHHh-cc-------hhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH---HHHHHHHHHHHH
Confidence 77666666655554411 11 0011110 011112222 22222333333
Q ss_pred ccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeec
Q 008792 160 CVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQ 206 (553)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~ 206 (553)
..++++.|.+..++ -.+.+++...+.|+|..+++.+..++.
T Consensus 149 lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999887 778999999999999999999888776
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00072 Score=68.15 Aligned_cols=101 Identities=15% Similarity=0.047 Sum_probs=75.5
Q ss_pred HHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHH
Q 008792 370 VPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGC 449 (553)
Q Consensus 370 ~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~ 449 (553)
+.+....+..+.+|..|| ..+.+|++..+++++..+.. .+...+++.=++.|+
T Consensus 81 Q~~sS~~~G~~SD~yGRk-------pvll~c~~~va~s~ll~~~S--------------------~~F~afv~aR~l~Gi 133 (451)
T KOG2615|consen 81 QFISSPLWGCLSDRYGRK-------PVLLACLIGVALSYLLWALS--------------------RNFAAFVLARFLGGI 133 (451)
T ss_pred HHHhhhhhhhhhhhhCch-------HHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhhhh
Confidence 333333333356664444 66888888888877777653 244344555677888
Q ss_pred HHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccc
Q 008792 450 AEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTD 498 (553)
Q Consensus 450 ~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~ 498 (553)
..+...+. .+++.|+.++++|+.+++...+..++|..+||.+++++..
T Consensus 134 ~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 134 FKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 77776666 7899999999999999999999999999999999998865
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0019 Score=70.26 Aligned_cols=152 Identities=10% Similarity=-0.034 Sum_probs=109.7
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchh---hhhhHHHHHHHHHhhhhhhHHHHhhhccchHH-HHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNV---QAVNNVTNWSGTCYVMPLIGAFLADAYLGRYW-TIAS 102 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-~~~~ 102 (553)
+.+|.+...+++.+...+.+|.+..+.|......++-++. +.++.......+..++..+.|.+..++ +|-| .+++
T Consensus 307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~ 385 (599)
T PF06609_consen 307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF 385 (599)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence 3356677777888889989999888888887777766653 567777778888889999999999888 7644 5556
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhh
Q 008792 103 FSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSS 182 (553)
Q Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 182 (553)
+.+++++++..++... + .+....+...++.|++.|...........-..|+++ .+.
T Consensus 386 ~~~~~ta~~Gama~~~--~----------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ig~ 441 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAVR--P----------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------IGT 441 (599)
T ss_pred HHHHHHHHHHHHHHcc--C----------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------HHH
Confidence 7666666555555331 1 123334455667788888776666665555667776 999
Q ss_pred hHHHHHHHHHHHHHHhhhhhe
Q 008792 183 FFNWFYFSINIGALVAASCLV 203 (553)
Q Consensus 183 ~~~~~~~~~~~G~~~~~~i~g 203 (553)
+.++....-.+|+.+|..+..
T Consensus 442 a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 442 ATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 999988888898888877554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.012 Score=52.76 Aligned_cols=105 Identities=10% Similarity=0.125 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHH
Q 008792 70 NNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYL 149 (553)
Q Consensus 70 ~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (553)
.-+++......+..++.+.+.+++ |.|+.++++.+.+++-...... .+.+.++.+-++
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~---------------------~~~~~l~~~s~l 98 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY---------------------PNSYTLYPASAL 98 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHH
Confidence 345556667778888889999998 9999999998877755544432 246778899999
Q ss_pred HhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhh
Q 008792 150 IALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCL 202 (553)
Q Consensus 150 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 202 (553)
.|++.+..+++...++.+...+++ |++..+++....+.+..+|..+.
T Consensus 99 ~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 99 LGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888776 78888887777777766665543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0056 Score=48.52 Aligned_cols=73 Identities=10% Similarity=-0.002 Sum_probs=62.9
Q ss_pred HHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh
Q 008792 43 RLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMS 117 (553)
Q Consensus 43 ~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~ 117 (553)
.++.+.+.+.+| .++++.++|.++.+++.+...+++.++.+...++.++. .+++.+..+.+...+.+..+++.
T Consensus 5 GigRFayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 5 GIGRFAYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hhHHHHHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556554 46788999999999999999999999999999999998 88999999999999999888877
|
Note that many members are hypothetical proteins. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.017 Score=63.16 Aligned_cols=120 Identities=12% Similarity=0.071 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhh
Q 008792 391 FTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAM 470 (553)
Q Consensus 391 ~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~ 470 (553)
+++++.+.+|.++..++.+..+..... ....+.+.+++..++.|+|.+...+.....+.+.+| +.
T Consensus 88 ~G~R~vllig~ll~~iG~ll~ala~~~--------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~ 152 (591)
T PTZ00207 88 LGPRPIFVLSMTVFCLGTLLFALTFQE--------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN 152 (591)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhcc--------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence 455578899999999998887764100 011356777778889999998888888888888887 67
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhh-hhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008792 471 RSLCSALSLTTAALGNYLSTLLV-NIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCY 543 (553)
Q Consensus 471 rg~~~g~~~~~~~lg~~ig~~l~-~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~ 543 (553)
||.+.|+.....++|+.+.+.+. .++.+ +| ..+|++.+++.++..++.+.+.+..
T Consensus 153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--------~~----------~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 153 RGAVVAIMKTFTGLGSAILGSIQLAFFSD--------NT----------SAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hH----------HHHHHHHHHHHHHHHHHHHhheeCC
Confidence 99999999999999998644444 33321 11 2456777777666666666655543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.011 Score=65.15 Aligned_cols=173 Identities=13% Similarity=0.087 Sum_probs=114.6
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHH-HHhhhhhhHHHHhhhc-cchHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSG-TCYVMPLIGAFLADAY-LGRYWTIASFSIIY 107 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~ 107 (553)
+.+...++...++...+-++.+++|-|+..+++++...+..+.+...+ +..+|..++|++.-|+ +..|.+..+.++..
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~ 471 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS 471 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence 455677788899999999999999999999999999999988866554 5668999999999988 23344444444433
Q ss_pred HHHHHHHH---hh-h-------------cc---------------------cCCCCCCCCC-----CCc-----------
Q 008792 108 VIGMTILT---MS-A-------------SV---------------------HGLKPLCDKR-----NVC----------- 133 (553)
Q Consensus 108 ~i~~~~~~---~~-~-------------~~---------------------~~~~~~~~~~-----~~~----------- 133 (553)
.+..+... +. . +. ....|+|+.. .+|
T Consensus 472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~ 551 (735)
T KOG3626|consen 472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS 551 (735)
T ss_pred HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence 33333311 11 0 00 0111233321 112
Q ss_pred ---------------------------CCC-chhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHH
Q 008792 134 ---------------------------HPT-GLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFN 185 (553)
Q Consensus 134 ---------------------------~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 185 (553)
+++ ...+..+++..++..+..+...+....++.+.+++++ |.-+.|
T Consensus 552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG 625 (735)
T KOG3626|consen 552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALG 625 (735)
T ss_pred CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhH
Confidence 111 1123334444444555555555677788899999999 999999
Q ss_pred HHHHHH-HHHHHHhhhhheeeccc
Q 008792 186 WFYFSI-NIGALVAASCLVWIQTN 208 (553)
Q Consensus 186 ~~~~~~-~~G~~~~~~i~g~l~~~ 208 (553)
+..+.. -+|.+-+|++-|+++|.
T Consensus 626 ~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 626 FQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred HHHHHHHHHhcCCchHhhhhhHhh
Confidence 966665 56889999999998763
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.00042 Score=75.35 Aligned_cols=173 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHH-HHhhhhhhHHHHhhhc-cchHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSG-TCYVMPLIGAFLADAY-LGRYWTIASFSIIY 107 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~ 107 (553)
+.+....+...++.....++.+++|.|++.++++++.+++++.+...+ +..++.+++|++..|+ .+.|+......+..
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~ 384 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS 384 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence 344566677778888888999999999999999999999988877655 6779999999999998 22344444443333
Q ss_pred HHHHHH---HHhh-----------hccc---------CCCCCCCC----------CCCcCCC-chhHHHHHHHHHHHhhc
Q 008792 108 VIGMTI---LTMS-----------ASVH---------GLKPLCDK----------RNVCHPT-GLQIAVFFVGLYLIALG 153 (553)
Q Consensus 108 ~i~~~~---~~~~-----------~~~~---------~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~l~g~~ 153 (553)
.++.+. ..+. ..++ .....||+ ...|++. ...+..+++..++..+.
T Consensus 385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~ 464 (539)
T PF03137_consen 385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF 464 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence 333322 1111 0110 00013332 2345554 34556666666665555
Q ss_pred ccccccccccccccCCCCCchHhHhhhhhhHHHHHHH-HHHHHHHhhhhheeeccc
Q 008792 154 TGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS-INIGALVAASCLVWIQTN 208 (553)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~i~g~l~~~ 208 (553)
.+...+......-+.+++++ |+-+.|+..+. --+|.+=||++-|.+++.
T Consensus 465 ~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 465 TFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------------
T ss_pred HHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 56555666677778999998 99999996655 456888999999988875
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.024 Score=61.76 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=82.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhH
Q 008792 392 TQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMR 471 (553)
Q Consensus 392 ~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~r 471 (553)
++++.+..++++..++-+..++. .+++.+++.-++.|++..........+..|..+++.|
T Consensus 146 GRk~~~~~~~~~~~i~~~~~a~a--------------------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R 205 (521)
T KOG0255|consen 146 GRKPVLLVSLLLFIIFGILTAFA--------------------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQR 205 (521)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh--------------------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchh
Confidence 33467788888887777666665 4778888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHH
Q 008792 472 SLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGV 535 (553)
Q Consensus 472 g~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~ 535 (553)
+.+..+ ......++.+++.+.+++.. +| ...+++.....++..++
T Consensus 206 ~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 206 GLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLFLLL 250 (521)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHHHHH
Confidence 999999 87888888888888877754 45 33456655555555444
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.015 Score=60.21 Aligned_cols=153 Identities=12% Similarity=0.001 Sum_probs=93.1
Q ss_pred CCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHH
Q 008792 62 NQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIA 141 (553)
Q Consensus 62 ~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (553)
+.+...+|.+.....+.+++++.++|.++||..+-|.++++......++.... ...++.. ...+
T Consensus 297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l-~~~t~~~---------------~~~v 360 (480)
T KOG2563|consen 297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLML-LTCTLFL---------------GDSV 360 (480)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHhhccC---------------CceE
Confidence 55557888998889999999999999999999334555555555544443222 2211111 2234
Q ss_pred HHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccccc----chhhhHH
Q 008792 142 VFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVG----WGWGFGI 217 (553)
Q Consensus 142 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~----~~~~f~i 217 (553)
.++..-.+.|++.....|...-+..|...+.. -++-.|+.++..++-+.+=..+.+...+..+ +...-+.
T Consensus 361 iv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~ 434 (480)
T KOG2563|consen 361 IVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIF 434 (480)
T ss_pred ehhhhHHHHHHhhcCCCCcceeeeeeeccccC------CcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhH
Confidence 45555667788888888988888888875554 3455566555555555555566666665554 3322333
Q ss_pred HHHHHHHHHHHHHhcccee
Q 008792 218 PAVAMAIAVVSFFAGSRLY 236 (553)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ 236 (553)
......+.+.+..+.++++
T Consensus 435 ~~~~~~l~~~lva~~r~~y 453 (480)
T KOG2563|consen 435 LTVSALLGAILVAFFRPDY 453 (480)
T ss_pred hHHHHHHHHHHHhhhhhhH
Confidence 3334444444444444444
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.07 Score=57.94 Aligned_cols=166 Identities=14% Similarity=0.052 Sum_probs=89.3
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHH-HHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIA-SFSIIYV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~ 108 (553)
+.+...++...+..+.+-.+ ..-.+..-+|-+..+.+.+++.+.++..+|+.++|+++++. -|+...+ ++..+.+
T Consensus 17 ~~l~~~~f~sg~~~L~yEv~---~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~ 92 (521)
T PRK03612 17 ALLLAAVFVCAACGLVYELL---LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLG 92 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHH
Confidence 33444444444444544433 33444555788888889999999999999999999987554 3332221 1111111
Q ss_pred -HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 109 -IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 109 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
++..+......... .....++...++.++..|+..|....+..+... ++ -++..|-.
T Consensus 93 ~~~~~ll~~~~~~~~---------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~l 150 (521)
T PRK03612 93 GLSALILYAAFAFQG---------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATV 150 (521)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhh
Confidence 11111111100000 011223344455677888877776655544322 11 23455666
Q ss_pred HHHHHHHHHHhhhhheee-cccccchhhhHHHHHH
Q 008792 188 YFSINIGALVAASCLVWI-QTNVGWGWGFGIPAVA 221 (553)
Q Consensus 188 ~~~~~~G~~~~~~i~g~l-~~~~~~~~~f~i~~~~ 221 (553)
+....+|+++|.++.+++ ....|-....++.+.+
T Consensus 151 y~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l 185 (521)
T PRK03612 151 LAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL 185 (521)
T ss_pred HhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 777778888888887754 3456654444444333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0063 Score=64.29 Aligned_cols=204 Identities=14% Similarity=0.049 Sum_probs=121.7
Q ss_pred CcccCCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHH----HHHHHHhhhhhhHHHHh-hhccch
Q 008792 22 VKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVT----NWSGTCYVMPLIGAFLA-DAYLGR 96 (553)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~----~~~~~~~~~~~~~G~la-Dr~~Gr 96 (553)
.+..+..|+..+.+++..+..++.+..+-...+......++.+.+++-...+ ..........+.-+... -++ .+
T Consensus 254 ~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i-~~ 332 (488)
T KOG2325|consen 254 VKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKI-DK 332 (488)
T ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhh-cc
Confidence 3344455777888888888888888776676666666667766665543333 33333333333333332 233 33
Q ss_pred HHHHHHH-HHHHHHHHHHHH-hhh-c-----ccCCCCCCCC--CCCcCC-CchhHHHHHHHHH-HHhhcccccccccccc
Q 008792 97 YWTIASF-SIIYVIGMTILT-MSA-S-----VHGLKPLCDK--RNVCHP-TGLQIAVFFVGLY-LIALGTGGIKPCVSSF 164 (553)
Q Consensus 97 ~~~~~~~-~~~~~i~~~~~~-~~~-~-----~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~-l~g~~~~~~~~~~~~~ 164 (553)
|+.+..+ .+.+..-.+.+. ... + .+.-+..|+. |-=|+. +..+.+.++.... +.|.+.-.+.....++
T Consensus 333 r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tl 412 (488)
T KOG2325|consen 333 RRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTL 412 (488)
T ss_pred ceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHH
Confidence 4444444 332222222111 110 0 0011124443 223666 3345555555543 4577766666777888
Q ss_pred cccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhc
Q 008792 165 GADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 165 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
.+++..+.+ .++.-++++....++..+||.+...+....|.++...+..+..++....+...
T Consensus 413 ySkiLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~ 474 (488)
T KOG2325|consen 413 YSKILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVF 474 (488)
T ss_pred HHHHhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 999998887 78888889999999999999988888888888888777766665555544443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.016 Score=61.62 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=106.0
Q ss_pred HHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHH-HHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Q 008792 52 NLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGA-FLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKR 130 (553)
Q Consensus 52 ~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 130 (553)
.++.|+...++.+..+.+...+..+....++..+.. .+.-.+ |-|+++..|+....+...+.+++
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~~~~~~~~~~af~------------- 328 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLLSEFLQLLLFAFA------------- 328 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHHHHHHHHHHHHHh-------------
Confidence 346788889999999999999999999999999988 556655 99999999999999999999988
Q ss_pred CCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeec
Q 008792 131 NVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQ 206 (553)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~ 206 (553)
++.|+.+...++.+ ......|..-++.+.+.++++ +|+.+++......+.++++|.+-+.+.
T Consensus 329 -------~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 329 -------TETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred -------ccchhhhHHHHHHH-hhcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 34666666665554 445567888999999999998 999999999999999999998887663
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.084 Score=54.78 Aligned_cols=124 Identities=14% Similarity=0.023 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChh---hHH
Q 008792 396 RIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDA---MRS 472 (553)
Q Consensus 396 ~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~---~rg 472 (553)
.+..|.++..+|.+++....... ..+...+.+.+.+.+++.++|.++.-|....+..++.+++ .|.
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~-----------~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~ 71 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPP-----------SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRD 71 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSS-----------SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcc-----------hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhh
Confidence 46778888888888765542110 0011134456777888999999999999999999999866 466
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008792 473 LCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYK 546 (553)
Q Consensus 473 ~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~ 546 (553)
.....+.....+|..++..+.+++.+.. +++..|++.++..+++.+.++...++++++
T Consensus 72 ~~F~~fY~~in~G~~~~~~~~~~i~~~~----------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 72 SFFNWFYWGINIGSLFSPTLVPYIQQNY----------------GWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhHHHHHHHHhhhhHhhcccchhhcccc----------------chhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 6666777888999999988888776422 345667888888888888777776666555
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.34 Score=51.10 Aligned_cols=153 Identities=8% Similarity=-0.044 Sum_probs=112.7
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
.++...+...+..+..-+.-..+..|+... |+++...|..=+...+....+.....++.+|+ |..|.=+.+......+
T Consensus 259 ~vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~ 336 (432)
T PF06963_consen 259 PVFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVC 336 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHH
Confidence 334444444444444445566688898776 99999999999999999999999999999999 9988888888777666
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCC-CchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHP-TGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
..++..+...+. ++ +..+...++.+.++.=+|.=++-.+..-++-|..|+++ |+...+..+.
T Consensus 337 L~~~v~~~~~~~-----------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~s 399 (432)
T PF06963_consen 337 LALCVVSFWAPG-----------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNS 399 (432)
T ss_pred HHHHHHHHhcCC-----------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHH
Confidence 665554433232 01 12345566666666666666677777888889999888 9999999988
Q ss_pred HHHHHHHHhhhhh
Q 008792 190 SINIGALVAASCL 202 (553)
Q Consensus 190 ~~~~G~~~~~~i~ 202 (553)
..++.-++...++
T Consensus 400 l~~lf~ll~~~~~ 412 (432)
T PF06963_consen 400 LQSLFELLSFVLT 412 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888775544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.42 Score=42.88 Aligned_cols=62 Identities=6% Similarity=0.107 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhcc
Q 008792 436 SIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVT 497 (553)
Q Consensus 436 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~ 497 (553)
+.+.+++..++.|++.+..++..-.++.+...++.|++-.+++......+..+|..+.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999988877765543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.37 Score=46.89 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=65.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhh
Q 008792 391 FTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAM 470 (553)
Q Consensus 391 ~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~ 470 (553)
.+++..+.+|.+...+++......... .-...+.|.+.....+.+.+.....+.......+.+|+ .
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~~~-------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAVSG-------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhC-------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 567777889999999998877654211 01124566666666677777666666656666688985 7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008792 471 RSLCSALSLTTAALGNYLSTLLVNIV 496 (553)
Q Consensus 471 rg~~~g~~~~~~~lg~~ig~~l~~~i 496 (553)
||++.|+.-...++++.+-+.+...+
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHH
Confidence 99999999999999998877766544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.18 Score=53.21 Aligned_cols=148 Identities=16% Similarity=0.062 Sum_probs=99.3
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHhhhccchH-------HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchh
Q 008792 67 QAVNNVTNWSGTCYVMPLIGAFLADAYLGRY-------WTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQ 139 (553)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (553)
...+.++...+.-.+.+|+..++--+. +++ .-+-+++++...+.+++........ ++ +...+
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~--------~~--~~~~s 393 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFG--------GP--SGLVS 393 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc--------CC--CCCcC
Confidence 456777888888888888888887775 433 2344555566666655554411000 00 12256
Q ss_pred HHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhhee------ecccccchh
Q 008792 140 IAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVW------IQTNVGWGW 213 (553)
Q Consensus 140 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~------l~~~~~~~~ 213 (553)
.++++..-+++++|.=+..|...+++++..|+.- .+..++++-.....|..++..+.+. ..+......
T Consensus 394 ~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~ 467 (498)
T COG3104 394 VWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGR 467 (498)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhh
Confidence 8889999999999999999999999999999877 7888888888888888777766663 222334555
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 008792 214 GFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 214 ~f~i~~~~~~~~~~~~~~ 231 (553)
.|+..++..++.......
T Consensus 468 ~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 468 VFGTIGVVAIVIGILLLL 485 (498)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 666665554444443333
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.73 E-value=6.2 Score=40.99 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=46.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhh
Q 008792 435 MSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLV 493 (553)
Q Consensus 435 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~ 493 (553)
.+-+|.+....+.|+..+-.....+.+..+..|++.+-.+..+..+.-..|-..|..+.
T Consensus 341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35577788889999999999999999999999988887777777776677776665543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.39 Score=50.82 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=94.3
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhh--cCCchhh-hhhHHHHHHHHHhhhhhhHHHHhhhc--cchHHHHHHHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFE--LNQGNVQ-AVNNVTNWSGTCYVMPLIGAFLADAY--LGRYWTIASFSII 106 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~--~Gr~~~~~~~~~~ 106 (553)
+..+....+..++...-+....|..+... ++.+... .+.......++..++..+.+.+.+|. +||++++.++.++
T Consensus 242 ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~ 321 (461)
T KOG3098|consen 242 MLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIII 321 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHH
Confidence 44444444445455444555566655433 2222221 22223334455556666666666444 3889999999888
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCc-------hhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhh
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTG-------LQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKK 179 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (553)
..++.++.-+. +|... |..+++ .+....++.-++.|++.++..+..+.++++.+| ++
T Consensus 322 ~~~~~~li~l~--~p~da-------p~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~------ 385 (461)
T KOG3098|consen 322 HLIGFLLIHLS--FPNDA-------PLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DD------ 385 (461)
T ss_pred HHHHHHHHhcc--ccccC-------CCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc------
Confidence 88888777655 23211 111211 134456666778999999999999999999995 44
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhh
Q 008792 180 KSSFFNWFYFSINIGALVAASCL 202 (553)
Q Consensus 180 r~~~~~~~~~~~~~G~~~~~~i~ 202 (553)
|..+++++.+-..++..++-...
T Consensus 386 ~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 386 RAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Confidence 77788887777777766554433
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.52 Score=47.05 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=78.3
Q ss_pred CCcccCCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHH
Q 008792 21 AVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTI 100 (553)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~ 100 (553)
..++.+..-|+++..-...+....++-+.. .+......++| +.+ .+...+......++.+.+..++ |-|.++
T Consensus 20 ~~r~~~~~~knv~i~s~~fl~~f~a~~gl~-nlq~~vn~~lg----~~s--l~~~y~~l~~s~m~~~~~Ir~~-g~K~tm 91 (390)
T KOG3097|consen 20 YRRKRLGILKNVLILSIAFLLTFTAYLGLQ-NLQTSVNYDLG----TVS--LGALYLSLIDSSMFMPLLIRFL-GTKWTM 91 (390)
T ss_pred hcccccchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHhcCcc----cch--hhhhhHHHHHHHHHHHHHHHHH-hhHHHH
Confidence 334445566777777777777666666543 33333333333 222 2223344455556666788887 999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCc
Q 008792 101 ASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYD 173 (553)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 173 (553)
.++...+........ . ..+..++.+-...|++.+..+.+--++++++-..+.
T Consensus 92 ~lav~~Y~lyiA~Nl-----~----------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya 143 (390)
T KOG3097|consen 92 VLAVFPYALYIAANL-----E----------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYA 143 (390)
T ss_pred HHHHHHHHHHHHhhc-----c----------------hhHHhhccHHHhhccccccccccCcceecHHHHHHH
Confidence 888765554333222 1 246667888889999999999988888888776554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.08 E-value=9.5 Score=40.51 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=49.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhh
Q 008792 436 SIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLV 493 (553)
Q Consensus 436 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~ 493 (553)
+-++.++..++.|+..+......+.+..+..+++.|..+..+..+.-.+|-..|..+.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677789999999999999999999999999999998888888888888887664
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.83 Score=51.02 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChh---
Q 008792 393 QLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDA--- 469 (553)
Q Consensus 393 ~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~--- 469 (553)
+.+.+..+.++..++..++.+.... ...........+..+++.++|.+.+-|...++..++.+++
T Consensus 53 ~~~tIl~~~ii~~lG~~llai~a~~------------~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~ 120 (654)
T TIGR00926 53 KFKTILYLSIVYVVGHALLSFGAIP------------SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS 120 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCc------------ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh
Confidence 3455677777777777666542100 0000011223456678888899999999999999988754
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008792 470 MRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTY 545 (553)
Q Consensus 470 ~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~ 545 (553)
.|......+.....+|+.+++.+.+.+.+..+..+ .+.+++..|.+.+++++++.++++...+++++
T Consensus 121 ~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg---------~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~ 187 (654)
T TIGR00926 121 LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG---------CQDCYPLAFGVPAILMILALIVFMAGSKMYKK 187 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------cCcchHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 35556666667778888888888876653211000 01133456677777777777766665555543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.56 E-value=12 Score=39.95 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCC
Q 008792 440 QVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRH 503 (553)
Q Consensus 440 ~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~ 503 (553)
++...++..+.....+....++-..++.+..-|++|.+.|+.+.+|+---..+.-++.|..+..
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~ 471 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA 471 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence 4456788888889999999999999999999999999999999998877776666666655443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.15 Score=51.28 Aligned_cols=152 Identities=14% Similarity=0.063 Sum_probs=89.7
Q ss_pred HHHHHHhh-hhcCCchhhhh-hHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008792 51 TNLVNYLR-FELNQGNVQAV-NNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCD 128 (553)
Q Consensus 51 ~~l~~yl~-~~l~~s~~~~~-~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 128 (553)
+++.+|+. .+.|++..+.. -+.=.+.-...+...+.=.+.|-. .-|+++++-.+...+...++-+..+
T Consensus 25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~l-rYKPvivlq~ls~v~~w~~lv~g~s--------- 94 (433)
T KOG3810|consen 25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYL-RYKPVVVLQALSGVPVWIMLVFGPS--------- 94 (433)
T ss_pred CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhh-hcceeeeeeccchhHHHHHHHhcCC---------
Confidence 44566665 56678777654 333333444555556666688987 6677776655555555555555532
Q ss_pred CCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecc-
Q 008792 129 KRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQT- 207 (553)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~- 207 (553)
.+..-+.-++.|...+. ..+-++++=...++++ +-++.+....+.-.|...|..++-.+..
T Consensus 95 -----------V~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~------Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~ 156 (433)
T KOG3810|consen 95 -----------VKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEM------YKRVTGYCRAAFLVGKFVGSVLAQLLVSL 156 (433)
T ss_pred -----------chheeeehhhcChHHHH-HHhhhheeeeecCHHH------HHHHHHHhHHHHHHHhHHHhHHHHHHhhh
Confidence 33333334444444443 2344677777777776 7778888888888888888777665544
Q ss_pred -cccchhhhHHHHHHHHHHHHHHH
Q 008792 208 -NVGWGWGFGIPAVAMAIAVVSFF 230 (553)
Q Consensus 208 -~~~~~~~f~i~~~~~~~~~~~~~ 230 (553)
..++...-+++.....++....+
T Consensus 157 ~~~sy~~LN~ISL~~~~ia~~~A~ 180 (433)
T KOG3810|consen 157 ETLSYTTLNYISLAEVTIAVLLAL 180 (433)
T ss_pred cccchhhhchhhHHHHHHHHHHHh
Confidence 23444444556555555544433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.18 E-value=5.9 Score=42.65 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=90.2
Q ss_pred CccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhc---CCchhhhhhHHHHHHH-HHhhhhhhHHHHhhhccchHHHHHHH
Q 008792 28 TWKACPYILGNECCERLAYYGINTNLVNYLRFEL---NQGNVQAVNNVTNWSG-TCYVMPLIGAFLADAYLGRYWTIASF 103 (553)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~ 103 (553)
-+|+++.+.+..|+..+.+... --++|.+ ..+++....+=....+ ...+...+-.++++++ +|.+++.+.
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~l-----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~ 95 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTIL-----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYII 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 3455666666666655554321 2234433 2233344444332222 4556677789999999 999988877
Q ss_pred HHHHHHHHHHHHhhhcccC---CCC--CCCCCCCcCCCc----------hhHHHHHHHHHHHhhccccccc-cccccccc
Q 008792 104 SIIYVIGMTILTMSASVHG---LKP--LCDKRNVCHPTG----------LQIAVFFVGLYLIALGTGGIKP-CVSSFGAD 167 (553)
Q Consensus 104 ~~~~~i~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~ 167 (553)
...+.....+.++.- +|. ++| .|++-....+.. ++...+++.-=+.| ....+ .-+++..|
T Consensus 96 ~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwg---svvlSlLFW~fAN~ 171 (491)
T PF03219_consen 96 IIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWG---SVVLSLLFWGFANE 171 (491)
T ss_pred HHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 666655555555431 122 111 111111111100 01112222211221 11112 34788899
Q ss_pred CCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecc
Q 008792 168 QFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQT 207 (553)
Q Consensus 168 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~ 207 (553)
.+..++ -.+.+++...+.|+|..++..+..++.+
T Consensus 172 itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 172 ITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred cCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887 7789999999999999999888877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.46 E-value=17 Score=38.70 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=98.0
Q ss_pred CccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCC---chhhhhhHHHHHHH-HHhhhhhhHHHHhhhccchHHHHHHH
Q 008792 28 TWKACPYILGNECCERLAYYGINTNLVNYLRFELNQ---GNVQAVNNVTNWSG-TCYVMPLIGAFLADAYLGRYWTIASF 103 (553)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~ 103 (553)
-++++..+.+..+|..+.+..+ --++|.+-+ ++....++=...-+ ...+..++-+++.+++ -|.+++.+-
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~l-----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLL-----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence 3455666666666666654422 224666543 34445555555545 6778888999999999 999999888
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCc----------CC-C---------chhHHHHHHHHHHHhhccccccc-ccc
Q 008792 104 SIIYVIGMTILTMSASVHGLKPLCDKRNVC----------HP-T---------GLQIAVFFVGLYLIALGTGGIKP-CVS 162 (553)
Q Consensus 104 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~---------~~~~~~~~~~~~l~g~~~~~~~~-~~~ 162 (553)
...+....++.++.- .|.||...|= +| + .++...+++.-=+.| ..... ..+
T Consensus 99 ~~~F~~fF~LFa~Vi-----~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg---slV~S~lFw 170 (509)
T COG3202 99 LGFFLGFFALFAFVI-----YPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG---SLVLSLLFW 170 (509)
T ss_pred HHHHHHHHHHHHHHH-----hccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH---HHHHHHHHH
Confidence 777777777777652 1112211110 00 0 012222222222211 11111 346
Q ss_pred cccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccc
Q 008792 163 SFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTN 208 (553)
Q Consensus 163 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~ 208 (553)
....|+...++ -.+.+++++...|++..++..+..++.+.
T Consensus 171 ~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 171 QFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77778888777 77899999999999999999988888763
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.24 Score=51.44 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheee
Q 008792 139 QIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWI 205 (553)
Q Consensus 139 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l 205 (553)
+.+..++..+..|+..|..+.+....+.|..++++ |.-.++...++-.+|..++..++-++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47777788888999999999999999999888877 99999999999999998887766443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.8 Score=46.02 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhccc---ChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCC
Q 008792 437 IFWQVPQYFIIGCAEVFTFIGQLEFFYEQA---PDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNL 513 (553)
Q Consensus 437 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~---P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~ 513 (553)
.........+..+|..+.....-+.+.|.. |++ ||...+.......+|+.++..+.|.+.+..+.
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~----------- 153 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP----------- 153 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC-----------
Confidence 344455667778888888887777777765 444 78888888888999999999998877653321
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 008792 514 NYGNLHYFFWLLALLSVLNLGVYLMVARC 542 (553)
Q Consensus 514 ~~~~~~~~f~i~~~~~~v~~~~~~~~~~~ 542 (553)
...|.+.+.+..+..+..+++.+|
T Consensus 154 -----~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 154 -----QGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred -----eEEehHHHHHHHHHHHHHHHhhhh
Confidence 123667777766666666666665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.23 E-value=10 Score=37.81 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 008792 436 SIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIV 496 (553)
Q Consensus 436 ~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i 496 (553)
++|.+++..+.-|+-.+......+--+.+..+++.|-.+++.......+|-.++..+.-.+
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 4444444445555554555555556677888899999999999988888887777666433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.3 Score=43.10 Aligned_cols=176 Identities=12% Similarity=0.036 Sum_probs=103.3
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccch--HHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGR--YWTIASFSII 106 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--~~~~~~~~~~ 106 (553)
.|...+......++...+-.++-|.|..=.++- ..--|.+.+.+.++.++++-+..++..|- .. ...+.+....
T Consensus 248 ~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e---~iPhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~v 323 (454)
T KOG4332|consen 248 EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDE---EIPHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLV 323 (454)
T ss_pred hHHHHHHHHHHHHhhhhheeeeeecccCCCCcc---cCCchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHH
Confidence 355556666667776666555555543221221 23357888888888888888887777665 32 2233343333
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
..+.. .+.+.++..+ |...+...-+++..+.-.+.|.++|...-+-.+..|.+. |++.+.+
T Consensus 324 s~a~l-~Lpilt~~vs------------P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNf 384 (454)
T KOG4332|consen 324 SIAAL-LLPILTSSVS------------PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNF 384 (454)
T ss_pred HHHHH-HHHHHHhccC------------CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------Hhhhhhh
Confidence 33322 2222211111 111334444667777788999999999999999999887 9999999
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHH
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~ 227 (553)
+..-.|+-.-++-...-.=....+-|..|.++.+....+.+
T Consensus 385 FRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 385 FRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred eechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence 88887776554422100001124566778777766555543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.47 E-value=24 Score=36.07 Aligned_cols=96 Identities=11% Similarity=-0.069 Sum_probs=51.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhh-----hhcccChhhHHHHHHHHH-HHHHHHHHHhhHhhhhccccccCCCCCCC
Q 008792 435 MSIFWQVPQYFIIGCAEVFTFIGQLEF-----FYEQAPDAMRSLCSALSL-TTAALGNYLSTLLVNIVTDFSTRHGKPGW 508 (553)
Q Consensus 435 ~~~~~~i~~~~l~g~~~~~~~~~~~~~-----~~~~~P~~~rg~~~g~~~-~~~~lg~~ig~~l~~~i~~~~~~~~~~~w 508 (553)
.+.+.+++.-++.|++..+.+..-=++ -..-.|++..+...+... ..+.+-..++..+...+.+..+.+
T Consensus 119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g----- 193 (354)
T PF05631_consen 119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG----- 193 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC-----
Confidence 456777778889999988888763332 233456665555554443 233344444444444443322211
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008792 509 IPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYT 544 (553)
Q Consensus 509 ~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~ 544 (553)
....|.....+.+++.++.....+|..
T Consensus 194 ---------~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 194 ---------PVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred ---------CcchHHHHHHHHHHHHHHHHhcccccC
Confidence 112366666666666665554445543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=88.29 E-value=2.3 Score=45.20 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhh
Q 008792 139 QIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASC 201 (553)
Q Consensus 139 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i 201 (553)
+-+..++..++.|+.+|-..+.+..+..+..++++ |..+-.+..++.++|-.+|..+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888999999999999998999888766 7777778888888888877664
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=86.82 E-value=8 Score=37.61 Aligned_cols=57 Identities=16% Similarity=0.335 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhheee-----cccccchhhhHHHHHHHHHHHHHHHhcccee
Q 008792 180 KSSFFNWFYFSINIGALVAASCLVWI-----QTNVGWGWGFGIPAVAMAIAVVSFFAGSRLY 236 (553)
Q Consensus 180 r~~~~~~~~~~~~~G~~~~~~i~g~l-----~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 236 (553)
|+.......++.++|+.++-..--.- .....|++++.+.+.+.++-++.+.+..++.
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f 65 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF 65 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66777778888899988874322111 1123599998888888888888887776554
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=83.17 E-value=64 Score=33.84 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHH
Q 008792 395 QRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLC 474 (553)
Q Consensus 395 ~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~ 474 (553)
..++.+.+...+...++.+. .+.+++-+.-+++|++... ...-+++++...|+++--++
T Consensus 72 pviil~~~~~i~t~~lll~~--------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~v 130 (412)
T PF01770_consen 72 PVIILQALSYIITWLLLLFG--------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKV 130 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHH
Confidence 45555555555555555443 3666777777888877555 45567999999999998899
Q ss_pred HHHHHHHHHHHHHHhhHhhhhccc
Q 008792 475 SALSLTTAALGNYLSTLLVNIVTD 498 (553)
Q Consensus 475 ~g~~~~~~~lg~~ig~~l~~~i~~ 498 (553)
.+....+.-+|..+|..++..+..
T Consensus 131 ts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 131 TSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888888777765543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 553 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-36 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 1e-10 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 535 bits (1381), Expect = 0.0
Identities = 129/550 (23%), Positives = 218/550 (39%), Gaps = 71/550 (12%)
Query: 23 KKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQG------NVQAVNNVTNWS 76
+ PYI+ +E CER ++YG+ L +L L A + ++
Sbjct: 5 VDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFV 64
Query: 77 GTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPT 136
Y PL+G ++AD + G+Y TI S+IY +G L +
Sbjct: 65 IGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH----------------- 107
Query: 137 GLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGAL 196
+ F+ GL+LIALG+GGIKP VSSF DQFD + K F+ FYF+IN G+
Sbjct: 108 --SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSF 162
Query: 197 VAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQ----- 251
A+ + + N G FGIP V M +A V F+ G + Y + P
Sbjct: 163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSA 222
Query: 252 -----------SLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSV----N 296
L+ A + ++ L A V G+
Sbjct: 223 LLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLER 282
Query: 297 AWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSA 356
A + V+ +S++R+L ++A+ F +++ Q + ++LQ N M A
Sbjct: 283 ARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM----VKPQWFEPA 338
Query: 357 SLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLEL 416
+ + + V+ +P + ++ P + T L+++ G+ I+ + + GT++
Sbjct: 339 MMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLSWIVVGTIQ- 394
Query: 417 VRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSA 476
+SIFWQ+ Y ++ EV LEF Y QAP AM+ +
Sbjct: 395 ----------LMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMS 444
Query: 477 LSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVY 536
+ +GN L V + + ++ FF+ A ++L V+
Sbjct: 445 FWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGFAILAAIVF 499
Query: 537 LMVARCYTYK 546
+ AR Y +
Sbjct: 500 ALYARSYQMQ 509
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 9e-39
Identities = 84/490 (17%), Positives = 174/490 (35%), Gaps = 72/490 (14%)
Query: 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQG-----NVQAVNNVTNWSGTCYVMPL 84
+ E ER +YYG+ L+ Y+ F ++ G A + + ++ Y+
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 85 IGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFF 144
IG F+AD +G + ++ ++G +L + F
Sbjct: 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASA--------------------LF 112
Query: 145 VGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVW 204
+ LI +GTG +KP VS+ +D++D +++ + F+ F F IN+GA +A +
Sbjct: 113 GSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGA 168
Query: 205 IQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLY--RYQKPGGSPLTRICQSLLYETADAE- 261
Q G+ F + A+ M I ++ ++ G + + PL L
Sbjct: 169 AQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAV 228
Query: 262 ---------FAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSI 312
++G + L L + A+ V VT E +
Sbjct: 229 AGFIAIIVVMNLVGWNSLPAYINLLTIVAIAI-----PVFYFAWMISSVKVTS-TEHLRV 282
Query: 313 IRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPI 372
+ +P++ ++F A+ Q + +S P + + + ++ + P
Sbjct: 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAER----VDSSWFPVSWFQSLNPLFIMLYTPF 338
Query: 373 YDRLIVPLARKFTGHKNGFTQLQRIAIGLVISI--FAMLTAGTLELVRLREVKKHNYYEL 430
+ L + + + A+GL+ + F ++
Sbjct: 339 FAWLWTAWKKN------QPSSPTKFAVGLMFAGLSFLLMAIPGALYG------------- 379
Query: 431 KHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLST 490
+S W V + ++ E+ L + AP A S ++ ++++G+ L+
Sbjct: 380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439
Query: 491 LLVNIVTDFS 500
LV + S
Sbjct: 440 QLVTLYNAKS 449
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 75/566 (13%), Positives = 147/566 (25%), Gaps = 162/566 (28%)
Query: 5 EDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQG 64
++ D D K + KE +I+ ++ L L + +
Sbjct: 31 DNFDCKD-VQDM-PKSILSKEE-----IDHIIMSKDAVSGTLR-----LFWTLLSKQEEM 78
Query: 65 NVQAVNNV--TNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHG 122
+ V V N+ FL + + +Y+ ++
Sbjct: 79 VQKFVEEVLRINYK-----------FLMSPIKTEQRQPSMMTRMYI------EQRDRLYN 121
Query: 123 LKPLCDKRNVCHP---TGLQIAVF------FVGLYLIALGTGGI-KPCVSSFGADQFDDY 172
+ K NV L+ A+ V + G G K + D Y
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----GVLGSGK---TWVALDVCLSY 174
Query: 173 DEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAG 232
K + F F+ +N+ + ++ +
Sbjct: 175 ----KVQCKMDFKIFW--LNLKNCNSPETVLEMLQK------------------------ 204
Query: 233 SRLYRYQKPGGSPLTRICQSLLYETADAEFAV--IGSHKLDHTKQLSFLDKAAVETPSDC 290
L P + + ++ + + + K + L L V+
Sbjct: 205 --LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLN--VQNAKA- 258
Query: 291 VKGSVNAWRL-CTV---TQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLH 346
NA+ L C + T+ FK + L +A + + ++D H
Sbjct: 259 ----WNAFNLSCKILLTTR---FKQVTDFLS--------AATTTHI---------SLD-H 293
Query: 347 IDNSFEIPSASLSLFDTISVIFWVPIYD-----RLIVPLA--------RKFTGHKNGFTQ 393
+ P SL D P R + +
Sbjct: 294 HSMTLT-PDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 394 LQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELK------HIP---MSIFWQVPQY 444
+ + +I L ++ E +K + L HIP +S+ W
Sbjct: 350 VNCDKLTTIIESS-------LNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 445 FIIGCAEVFTFIGQLE--FFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTR 502
+V + +L E+ P ++ L L +IV ++
Sbjct: 402 S-----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 503 HGKPGW--IPDNLNYGNLHYFFWLLA 526
IP L+ YF+ +
Sbjct: 457 KTFDSDDLIPPYLD----QYFYSHIG 478
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.93 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.89 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.86 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.43 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.34 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.19 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.05 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.94 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.19 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=276.78 Aligned_cols=453 Identities=19% Similarity=0.289 Sum_probs=290.0
Q ss_pred CCCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhh-----cCCchhhhhhHHHHHHHHHhhhhhhHHHHhhh-ccchHHH
Q 008792 26 TGTWKACPYILGNECCERLAYYGINTNLVNYLRFE-----LNQGNVQAVNNVTNWSGTCYVMPLIGAFLADA-YLGRYWT 99 (553)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Gr~~~ 99 (553)
++++|.++...+..++.+++++++.++++.|+++. +|.+..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 34567788999999999999999999999999988 99999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhh
Q 008792 100 IASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKK 179 (553)
Q Consensus 100 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (553)
+..+.++.+++.++++++ .+.+.++++|+++|++.+...+...++++|.+|+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~---- 143 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP--------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR---- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC--------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----
T ss_pred HHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----
Confidence 999999999999988876 24677899999999999999999999999999987744
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeecc---CCCCC-hHHHHHHhhhh
Q 008792 180 KSSFFNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQ---KPGGS-PLTRICQSLLY 255 (553)
Q Consensus 180 r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~ 255 (553)
|+.++++++...++|..++|.+++++.+..||++.|++.++..+++.+.++...++..++ +++.. +..+..+.. .
T Consensus 144 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 222 (491)
T 4aps_A 144 RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL-V 222 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH-H
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH-H
Confidence 778888899999999999999999999989999999998777776666554433322211 11111 111111100 0
Q ss_pred hccchh--hhhc-cccccccCCccch-hhh--c-cccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHh
Q 008792 256 ETADAE--FAVI-GSHKLDHTKQLSF-LDK--A-AVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAV 328 (553)
Q Consensus 256 ~~~~~~--~~~~-~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (553)
.....- .... ......+....+. ... . ........ ....|+... ....++++......++.....++..
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFY---FAWMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAI 298 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH---HHHHC-------------CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHH---HHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 0000000000000 000 0 00000000 000010000 0012233333344444455555555
Q ss_pred hccccceEEeeec-ccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHH
Q 008792 329 YSQMGTLFVLQGN-TMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFA 407 (553)
Q Consensus 329 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~ 407 (553)
+.+....+..+.. ..+.. ....+.......+..++..++.+++ .+|..+|+ ....+.+..+.++.+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~~~r~--~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 299 EEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWL----WTAWKKNQ--PSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHH----HHHTTTC-----CHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHH----HHHHhccC--CCchHHHHHHHHHHHHH
Confidence 5544443222111 11111 0234445556666667777777775 44443331 33455677888888888
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHH
Q 008792 408 MLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNY 487 (553)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ 487 (553)
++.+....... ..+...+.++.++..++.+++.+...+..++++.|..|++.|++++|+.++...+|+.
T Consensus 368 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 368 FLLMAIPGALY-----------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HTTTHHHHHHC-----------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 77766543210 0011246677778889999999999999999999999999999999999999999999
Q ss_pred HhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 008792 488 LSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKK 547 (553)
Q Consensus 488 ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~ 547 (553)
+++.+.+.+.+. ++...|++.+++++++.++.++..++.+++.
T Consensus 437 i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 437 LNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp HHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877542 1234577888888888887777776665443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-30 Score=276.16 Aligned_cols=473 Identities=27% Similarity=0.451 Sum_probs=284.9
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcC------CchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELN------QGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTI 100 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~ 100 (553)
+++|.++...+..++.+++++++.++++.|+.+++| .+..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345678889999999999999999999999999999 99999999999999999999999999999976999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhh
Q 008792 101 ASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK 180 (553)
Q Consensus 101 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 180 (553)
.++.++.+++.++++++. .+.+.+++.|+++|++.+...|...+++.|.+|+++ |
T Consensus 89 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r 143 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------K 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------T
T ss_pred HHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------h
Confidence 999999999998888762 147789999999999999999999999999999988 7
Q ss_pred hhh---HHHHHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhc
Q 008792 181 SSF---FNWFYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYET 257 (553)
Q Consensus 181 ~~~---~~~~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (553)
++. +++++...++|..++|.+++++.+..||++.|++.++..+++.+.++...++.+++++++++..+..+......
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (524)
T 2xut_A 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSAL 223 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHH
Confidence 544 45599999999999999999999889999999988887777666655544433322222221111111000000
Q ss_pred cch----hh-h-hcc-------ccccccCCccchhhhccccCCCCcCCCCCCcc-------ccccchhhhhHHHHHhHHH
Q 008792 258 ADA----EF-A-VIG-------SHKLDHTKQLSFLDKAAVETPSDCVKGSVNAW-------RLCTVTQVEEFKSIIRLLP 317 (553)
Q Consensus 258 ~~~----~~-~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 317 (553)
+++ +. . ... .......+............-...+.....+| +.......+++++++....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (524)
T 2xut_A 224 LTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILV 303 (524)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHH
T ss_pred hhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHH
Confidence 000 00 0 000 00000000000000000000000000000011 0000011122333333334
Q ss_pred HHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHH
Q 008792 318 IWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRI 397 (553)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~ 397 (553)
++.....++..+.+..+.+..+....+.. .+ .+.+.....+.+..++..++.+++..+..+|..++ .+..+++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 376 (524)
T 2xut_A 304 LFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKM 376 (524)
T ss_dssp HHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHH
T ss_pred HHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHH
Confidence 44444444444554444333322221111 00 13344455566666777777777644444543322 4455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHH
Q 008792 398 AIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL 477 (553)
Q Consensus 398 ~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~ 477 (553)
..|+++.+++++.+....... +++...+.+++++..++.+++++...+..++++.|..|++.||+++|+
T Consensus 377 ~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 445 (524)
T 2xut_A 377 GAGIAITGLSWIVVGTIQLMM-----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSF 445 (524)
T ss_dssp HTHHHHHHHHHHTTTTTTTTT-----------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHH
Confidence 778888887776665431000 001124667778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhhhhccccccCCCCCCCccC-CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008792 478 SLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPD-NLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKL 548 (553)
Q Consensus 478 ~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~ 548 (553)
+++...+|+.+|+.+.+.+.+..+ .+|..+ +. +.....|++.+++++++.++++++.+++++++.
T Consensus 446 ~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 446 WTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp HGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhccccc----ccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 999999999999999998765321 123211 00 011233778888888888887777776654433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=251.12 Aligned_cols=401 Identities=12% Similarity=-0.007 Sum_probs=255.2
Q ss_pred CccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 28 TWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
.|+.++...+..+...+..+.+.+.+|.+ .+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 34556666677777777776666666655 4566 9999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHh----hhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhh
Q 008792 108 VIGMTILTM----SASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSF 183 (553)
Q Consensus 108 ~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 183 (553)
+++.+++++ + .+++.++++|+++|++.+...+...+++.|.+|+++ |+++
T Consensus 103 ~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~ 156 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT--------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGI 156 (451)
T ss_dssp HHHHHHHHHCHHHH--------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHH
T ss_pred HHHHHHHHhhhhcc--------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHH
Confidence 999999988 5 246678999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhh
Q 008792 184 FNWFYFSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEF 262 (553)
Q Consensus 184 ~~~~~~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (553)
+++.+...++|..++|.+++++.+..| |++.|++.+++.++..+..++..++.+++....++ ++
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~- 221 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI--------------EE- 221 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--------------TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh--------------hh-
Confidence 999999999999999999999888888 99999988877766655544444432221110000 00
Q ss_pred hhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHH-HHHHHHHHHHHhhccccceEEeeec
Q 008792 263 AVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLL-PIWAIGIVFSAVYSQMGTLFVLQGN 341 (553)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (553)
. . + +.+. +.. +. .+....++..........+.++... ..+.............+. +.
T Consensus 222 ~--~--~--~~~~----~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 279 (451)
T 1pw4_A 222 Y--K--N--DYPD----DYN-----EK--AEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT-YL---- 279 (451)
T ss_dssp T--C--C--C------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HB----
T ss_pred h--c--c--cccc----cch-----hh--hhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----
Confidence 0 0 0 0000 000 00 0000000000000000112222111 111111111111111111 11
Q ss_pred ccCcCCCCCccccc---ccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHH-HHHHHHHHHHHH
Q 008792 342 TMDLHIDNSFEIPS---ASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISI-FAMLTAGTLELV 417 (553)
Q Consensus 342 ~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~-~~~l~~~~~~~~ 417 (553)
....+ .++ +.......+..++..++.++ +.+|..+ ++++.+..+..+.. ++++.+...
T Consensus 280 --~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--- 341 (451)
T 1pw4_A 280 --KEVKH----FALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFMTLVTIATIVYWMN--- 341 (451)
T ss_dssp --TTBSC----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC---
T ss_pred --HHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh---
Confidence 11111 112 12222233333444444444 4555310 22344444444433 444443321
Q ss_pred HHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHH-HHHHhhHhhhhc
Q 008792 418 RLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAAL-GNYLSTLLVNIV 496 (553)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~~ig~~l~~~i 496 (553)
...+.+..+...++.|++.....+..+.++.|..|++.|+++.|+.+....+ |..+++.+.+.+
T Consensus 342 ---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l 406 (451)
T 1pw4_A 342 ---------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT 406 (451)
T ss_dssp ---------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124555666777888888888888889999999999999999999999999 999999999988
Q ss_pred cccccCCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008792 497 TDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCY 543 (553)
Q Consensus 497 ~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~ 543 (553)
.+.. ++...|++.+++.+++.++.+...++.
T Consensus 407 ~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
T 1pw4_A 407 VDFF----------------GWDGGFMVMIGGSILAVILLIVVMIGE 437 (451)
T ss_dssp HHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7632 234567888888888777776665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=234.69 Aligned_cols=356 Identities=13% Similarity=0.054 Sum_probs=230.4
Q ss_pred CCccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH
Q 008792 27 GTWKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII 106 (553)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~ 106 (553)
++++.+.......+...+....+.+.+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 4455556666666666666665555555 46788999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHH---HhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhh
Q 008792 107 YVIGMTIL---TMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSF 183 (553)
Q Consensus 107 ~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 183 (553)
.+++.+++ ... .+++.++++|+++|++.+...+...+++.|.+|+++ |+++
T Consensus 101 ~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~ 154 (438)
T 3o7q_A 101 YALGAALFWPAAEI--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFR 154 (438)
T ss_dssp HHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHH
T ss_pred HHHHHHHHHhcccc--------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHH
Confidence 99999888 444 358889999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHhhhhheeec-cccc-------------------------chhhhHHHHHHHHHHHHHHHhccceee
Q 008792 184 FNWFYFSINIGALVAASCLVWIQ-TNVG-------------------------WGWGFGIPAVAMAIAVVSFFAGSRLYR 237 (553)
Q Consensus 184 ~~~~~~~~~~G~~~~~~i~g~l~-~~~~-------------------------~~~~f~i~~~~~~~~~~~~~~~~~~~~ 237 (553)
+++.+...++|..++|.+++++. +..+ |++.|++.++..++..+.++.... +
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p 232 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--P 232 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--C
Confidence 99999999999999999999987 5554 899997766655555444333211 1
Q ss_pred ccCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHh-HH
Q 008792 238 YQKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIR-LL 316 (553)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 316 (553)
+++++.++ +.+..+.. ..++ ...+.+.+.. .+
T Consensus 233 ~~~~~~~~--------------------------~~~~~~~~----------------~~~~-----~~~~~~~~~~~~~ 265 (438)
T 3o7q_A 233 ALQSDNHS--------------------------DAKQGSFS----------------ASLS-----RLARIRHWRWAVL 265 (438)
T ss_dssp CCTTTCCC--------------------------CSSTTSHH----------------HHHH-----HHTTCSHHHHHHH
T ss_pred cccccccc--------------------------cccccchh----------------hhHH-----HHHhChHHHHHHH
Confidence 11110000 00000000 0000 0000111111 11
Q ss_pred HHHHHHHHHHHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHH
Q 008792 317 PIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQR 396 (553)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~ 396 (553)
..+.............+.++.. ...+ ......+.......+..++..++.++ +.+| +++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~------~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~ 327 (438)
T 3o7q_A 266 AQFCYVGAQTACWSYLIRYAVE------EIPG-MTAGFAANYLTGTMVCFFIGRFTGTW----LISR-------FAPHKV 327 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HSTT-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------SCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh------ccCC-cchhHHHHHHHHHHHHHHHHHHHHHH----HHHH-------hcchHH
Confidence 1111111111111111222011 1111 00001111222222333344444444 4555 344466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHH
Q 008792 397 IAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSA 476 (553)
Q Consensus 397 ~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g 476 (553)
+..+.++.+++.+..... +..+.+...++.+++.+...|..+++..|..|++ ++.+.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 385 (438)
T 3o7q_A 328 LAAYALIAMALCLISAFA---------------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSS 385 (438)
T ss_dssp HHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc---------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhh
Confidence 777777777766655543 1123344557788888888899999999999977 889998
Q ss_pred HHHHHHHHHHHHhhHhhhhccccc
Q 008792 477 LSLTTAALGNYLSTLLVNIVTDFS 500 (553)
Q Consensus 477 ~~~~~~~lg~~ig~~l~~~i~~~~ 500 (553)
+.. ...+|+.+++.+.+.+.|..
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHh
Confidence 887 66799999999999887754
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=237.81 Aligned_cols=410 Identities=12% Similarity=0.045 Sum_probs=223.8
Q ss_pred chhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCc-CCCchhHHH
Q 008792 64 GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVC-HPTGLQIAV 142 (553)
Q Consensus 64 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (553)
+..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+++++........ .....- ..-..+++.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~---~~~~~~~~~~a~~~~~ 128 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSI---NPDNTVPVYLAGYVPE 128 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCS---SSSSSCCGGGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhh---cchhHHHHHHhhhHHH
Confidence 345678889999999999999999999999 999999999999999999988542100000 000000 001146889
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccc--------ccchhh
Q 008792 143 FFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTN--------VGWGWG 214 (553)
Q Consensus 143 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~--------~~~~~~ 214 (553)
++++|+++|++.|+..+..+++++|..|+++ |++..++.+.+..+|..+++.++..+... .+|++.
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYM 202 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHH
Confidence 9999999999999999999999999999998 99999999999999999998877655432 346655
Q ss_pred hHHHHHHHHHHHHHHHhccceeec---cCCCCChHHHHHHhhhhhccchhhhhccccccccCCccchhhhccccCCCCcC
Q 008792 215 FGIPAVAMAIAVVSFFAGSRLYRY---QKPGGSPLTRICQSLLYETADAEFAVIGSHKLDHTKQLSFLDKAAVETPSDCV 291 (553)
Q Consensus 215 f~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (553)
+.+..+..++.+... +..|+.++ .+.+.++..+..+........+++.... .+..+....
T Consensus 203 ~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~------- 265 (491)
T 4gc0_A 203 FASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEI---------KHSLDHGRK------- 265 (491)
T ss_dssp HHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-------
T ss_pred hhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHH---------HHHHHhhhh-------
Confidence 554444333333222 22222111 0111111111111000000000000000 000000000
Q ss_pred CCCCCccccccchhhhhHHHHHhHHHHHHHHHHH-HHhhccccceEEeeecccCcCCCCCcccccccccccchhhhHHHH
Q 008792 292 KGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVF-SAVYSQMGTLFVLQGNTMDLHIDNSFEIPSASLSLFDTISVIFWV 370 (553)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 370 (553)
... .......++.............. ......+.+.+.. ..+ ..............+..++..
T Consensus 266 --~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~ 329 (491)
T 4gc0_A 266 --TGG------RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-------TLG-ASTDIALLQTIIVGVINLTFT 329 (491)
T ss_dssp --HTT------HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred --hhh------HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-------hcC-CCccchhhHHHHHHHHHHHHH
Confidence 000 00000111111111111000000 0000000010000 000 000001111122222223333
Q ss_pred HhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchhHHHHHHHHHHHH
Q 008792 371 PIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYELKHIPMSIFWQVPQYFIIGCA 450 (553)
Q Consensus 371 ~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~ 450 (553)
.+... +.+|..+ ++.+..+.....++++.++..... ....+..+....+...+
T Consensus 330 ~~~~~----l~dr~Gr-------r~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~ 382 (491)
T 4gc0_A 330 VLAIM----TVDKFGR-------KPLQIIGALGMAIGMFSLGTAFYT----------------QAPGIVALLSMLFYVAA 382 (491)
T ss_dssp HHHHH----HHHHHCS-------HHHHHHHHHHHHHHHHHHHHHHHT----------------TCCHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHhhcC-------cchhccchHHHHHHHHHHHHHHhc----------------ccchHHHHHHHHHHHHH
Confidence 33333 4555432 355666777777776665544211 01222222222222222
Q ss_pred -HHHHhhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHhhHhhhhccccccCCCCCCCccCCCCCCchHHHHHHHHHHH
Q 008792 451 -EVFTFIGQLEFFYEQAPDAMRSLCSALSLTTAALGNYLSTLLVNIVTDFSTRHGKPGWIPDNLNYGNLHYFFWLLALLS 529 (553)
Q Consensus 451 -~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~i~~~~~ 529 (553)
.....|..+.+..|.+|.+.|++++|+.+..+.+++.+++.+.+.+.+...... ..+....|+++++++
T Consensus 383 ~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~----------~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 383 FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA----------HFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH----------HHTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhhHHHHHHHHHH
Confidence 233447778899999999999999999999999999999988876654211000 001124588999999
Q ss_pred HHHHHHHHHHHhhcccccccccCC
Q 008792 530 VLNLGVYLMVARCYTYKKLVVSSH 553 (553)
Q Consensus 530 ~v~~~~~~~~~~~~~~~~~~~~~~ 553 (553)
+++.++.+++.||+|+|++||.|+
T Consensus 453 ~~~~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 453 VLAALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred HHHHHHHHheecCCCCCCHHHHHH
Confidence 999999999999999999988653
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=216.26 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=147.5
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 008792 33 PYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMT 112 (553)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~ 112 (553)
+......++..+....+.+.+|.+ .+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445566677777777777777664 678999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHH
Q 008792 113 ILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSIN 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 192 (553)
+.+.. .+.+.+++.|+++|++.+...+...+++.|.+|+++ |++++++.+...+
T Consensus 81 ~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 81 VAVTT--------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGIL 134 (375)
T ss_dssp HHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHH
T ss_pred HHHHh--------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHH
Confidence 98877 458889999999999999999999999999999988 9999999999999
Q ss_pred HHHHHhhhhheeecccccchhhhHHHHHHHHHHHH
Q 008792 193 IGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 193 ~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~ 227 (553)
+|..++|.+++++.+..+|++.|++.++..++..+
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999988999999877766555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-23 Score=214.54 Aligned_cols=394 Identities=9% Similarity=-0.059 Sum_probs=221.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|..+......++...++..+.+++|.|+++++|.|..+.+++.+.+.++..++++++|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566666666777777777788999999999999999999999999999999999999999999 999999988876654
Q ss_pred HHHHH---HhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 110 GMTIL---TMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 110 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
+.... ..... ....++.++.+.+++.+...+...+...+..++..+ .++..++.
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~ 142 (417)
T 2cfq_A 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGR 142 (417)
T ss_dssp CHHHHHHHTHHHH-------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHH
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHH
Confidence 33211 11100 000123445555555554444444444444332211 16777777
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhcc
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIG 266 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (553)
.+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++ +++..++ ++
T Consensus 143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------------~~----- 199 (417)
T 2cfq_A 143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD---APSSATV--------------AN----- 199 (417)
T ss_dssp HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC---CSCSSCS--------------SS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc---ccccccc--------------cc-----
Confidence 777889999999999998876 589999887665533333222111111 0000000 00
Q ss_pred ccccccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhh-ccccceEEeeecccCc
Q 008792 267 SHKLDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVY-SQMGTLFVLQGNTMDL 345 (553)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 345 (553)
..+ +..+.. ....++ .....+...............+..+ +..+.++.. ....
T Consensus 200 ~~~-~~~~~~-----------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 253 (417)
T 2cfq_A 200 AVG-ANHSAF-----------------SLKLAL-----ELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS---FFAT 253 (417)
T ss_dssp SSS-SCCCCC-----------------CHHHHH-----HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSSS
T ss_pred ccc-cccccc-----------------cHHHHH-----HHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHhc
Confidence 000 000000 000000 0000111111111111111111111 111111110 0000
Q ss_pred CCCCCccccc---ccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008792 346 HIDNSFEIPS---ASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREV 422 (553)
Q Consensus 346 ~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~ 422 (553)
..... +.....+.+..++...+.++ +.||. ++++.+..+.++.+++++.....
T Consensus 254 -----~~~~~~~~g~~~~~~~~~~~~~~~~~g~----l~dr~-------g~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T 2cfq_A 254 -----GEQGTRVFGYVTTMGELLNASIMFFAPL----IINRI-------GGKNALLLAGTIMSVRIIGSSFA-------- 309 (417)
T ss_dssp -----HHHHTHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------CHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred -----cCCChhHHHHHHHHHHHHHHHHHHHHHH----HHHHh-------cHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 00111 11122222233333444444 45553 23355666666666665444331
Q ss_pred hhcccccCCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHH-HHHHHHHHHHHhhHhhhhcccccc
Q 008792 423 KKHNYYELKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL-SLTTAALGNYLSTLLVNIVTDFST 501 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~ig~~l~~~i~~~~~ 501 (553)
.+.+.+++...+.+++.....+..+.++.|..|++.|+++.+. +++...+|+.++|.+.+.+.+..
T Consensus 310 ------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~- 376 (417)
T 2cfq_A 310 ------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI- 376 (417)
T ss_dssp ------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-
Confidence 2334444555566666666667778899999999999999999 48888999999999999776521
Q ss_pred CCCCCCCccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008792 502 RHGKPGWIPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKL 548 (553)
Q Consensus 502 ~~~~~~w~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~ 548 (553)
++...|.+.+++++++.++.+...+++++.++
T Consensus 377 ---------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 377 ---------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 34456788888888887776666666655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-13 Score=139.34 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=149.3
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhc-cchHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAY-LGRYWTIASFSIIYV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~~ 108 (553)
|.++...+..++.....+++..++|.|+++.+|.+..+.+.+.+...++..++.++.|+++||+ .|||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5677888888889999999999999999988999999999999999999999999999999996 267777777666555
Q ss_pred -HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHH
Q 008792 109 -IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWF 187 (553)
Q Consensus 109 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 187 (553)
++.+++.+. +. .+.+.+.+..++.|++.+...+...+++.|.+|+++ |+++++++
T Consensus 332 ~~~~~~~~~~---~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~ 387 (451)
T 1pw4_A 332 TIATIVYWMN---PA---------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT 387 (451)
T ss_dssp HHHHHHTTSC---CT---------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred HHHHHHHHHh---cc---------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHH
Confidence 555444433 11 246667777888899888888888899999999988 99999999
Q ss_pred HHHHHH-HHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhc
Q 008792 188 YFSINI-GALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAG 232 (553)
Q Consensus 188 ~~~~~~-G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 232 (553)
+...++ |..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999988887777766655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=134.99 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=136.7
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHH-hhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNY-LRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
|.++......++.....+++..+++.| +++.+|.+..+.+...+...++..++.+++|+++||+ |||+.+..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 557777788888888888889999999 8888899999999999999999999999999999999 99999999988888
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++.++..... +.+. .+..++.|++.+...|...++..|.+|++ ++.+.++..
T Consensus 337 ~~~~~~~~~~--------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 388 (438)
T 3o7q_A 337 ALCLISAFAG--------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHHCC--------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH
T ss_pred HHHHHHHHcC--------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH
Confidence 8877776551 2332 33447788889988999999989998854 455555554
Q ss_pred HHHHHHHHHhhhhheeeccccc-chhhhHHHHHHHHHHHH
Q 008792 189 FSINIGALVAASCLVWIQTNVG-WGWGFGIPAVAMAIAVV 227 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~-~~~~f~i~~~~~~~~~~ 227 (553)
...+|+.++|.+.|++.+..| ++..|++.++..++.+.
T Consensus 389 -~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 -MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 567999999999999999988 99999876655444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=134.36 Aligned_cols=177 Identities=7% Similarity=-0.037 Sum_probs=130.3
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCC---chhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQ---GNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIY 107 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~ 107 (553)
.++......++....++....++|.|+.+.++. +....+...+...++..++.++.|+++||+ |||+++..+.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 344444444444455555666788888766553 234456667777778888999999999999 9999998888777
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH-
Q 008792 108 VIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW- 186 (553)
Q Consensus 108 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~- 186 (553)
+++..+.++. .+.+.+++..++.+++.+...+...++..|.+|++. |+++.+.
T Consensus 300 ~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 353 (417)
T 2cfq_A 300 SVRIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVC 353 (417)
T ss_dssp HHHHHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHH
T ss_pred HHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHH
Confidence 7776665543 124555666666777766666667889999999887 9999998
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccc
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
++....+|+.++|.++|++.+..|++..|.+.+++.+++.+..+...+
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 588888999999999999988888888888877777776665544333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-11 Score=127.66 Aligned_cols=185 Identities=9% Similarity=-0.021 Sum_probs=136.4
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHH-----HHHHH
Q 008792 32 CPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIA-----SFSII 106 (553)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-----~~~~~ 106 (553)
.+......++....+......++.|+.+.++.+..+.+...+...+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 34445555556666666777888999888888878888888889999999999999999999 9876554 66666
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH
Q 008792 107 YVIGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW 186 (553)
Q Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 186 (553)
.+++..++........ .+...+.+.+.+..++.|++.+...+...+++.|.+|++. |+++.++
T Consensus 364 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 426 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG-----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSM 426 (491)
T ss_dssp HHHHHTTTHHHHHHCC-----------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHH
T ss_pred HHHHHHHHHHHHHhcC-----------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHH
Confidence 6666655554321000 0011245667778888999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccce
Q 008792 187 FYFSINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRL 235 (553)
Q Consensus 187 ~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 235 (553)
.+...++|..++|.+.+++.+ .++.+.|.+.+++.+++.+..+...++
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876 467777777776666666555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-10 Score=120.48 Aligned_cols=185 Identities=9% Similarity=0.003 Sum_probs=126.2
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 008792 31 ACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIG 110 (553)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~ 110 (553)
.........++.....+.......+++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 344444444444444444444455566677788887777777788889999999999999999 9999999998888888
Q ss_pred HHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHH
Q 008792 111 MTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFS 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 190 (553)
.+..+....... ........+..+..+.+. ...|..+.+.+|.+|.+. |+++.++.+..
T Consensus 356 ~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~ 414 (491)
T 4gc0_A 356 MFSLGTAFYTQA--------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHHTTC--------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHH
T ss_pred HHHHHHHHhccc--------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHH
Confidence 776665422111 111222222222223232 334677889999999999 99999999999
Q ss_pred HHHHHHHhhhhheeecc------cccchhhhHHHHHHHHHHHHHHHhccceee
Q 008792 191 INIGALVAASCLVWIQT------NVGWGWGFGIPAVAMAIAVVSFFAGSRLYR 237 (553)
Q Consensus 191 ~~~G~~~~~~i~g~l~~------~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 237 (553)
..+|+.+++.+.+.+.+ ..++.+.|++.+++.+++.++.++..|+.+
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 99999998887766543 245666777777777777776666666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-10 Score=118.21 Aligned_cols=164 Identities=11% Similarity=-0.022 Sum_probs=127.9
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHH-HH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSII-YV 108 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~-~~ 108 (553)
|.++......++.....+.+..++|.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4567777788888888888889999999988999999999999999999999999999999999 772 2333322 22
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
++......... + ..+.+.+++..++.|++.+...+...++..|.+| ++ |+++.++.+
T Consensus 276 ~~~~~~~~~~~-~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~ 332 (375)
T 2gfp_A 276 AGLLMWIPDWF-G---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVG 332 (375)
T ss_dssp TSSSSSHHHHH-H---------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHH
T ss_pred HHHHHHHHhhh-c---------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHH
Confidence 22221111100 0 0245666777888899999999999999999998 55 999999999
Q ss_pred HHHHHHHHHhhhhheeecccccchhhhHHHH
Q 008792 189 FSINIGALVAASCLVWIQTNVGWGWGFGIPA 219 (553)
Q Consensus 189 ~~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~ 219 (553)
...++|..++|.+.|.+.+..+|+..+.+.+
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999988778887766543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.9e-07 Score=96.54 Aligned_cols=150 Identities=12% Similarity=0.076 Sum_probs=95.6
Q ss_pred hhhhHHHHHHHHHhhhhhhHHHHh----hhccch----HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCch
Q 008792 67 QAVNNVTNWSGTCYVMPLIGAFLA----DAYLGR----YWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGL 138 (553)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~G~la----Dr~~Gr----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (553)
..+.+.....++..+..++.+++. ||. |+ ++.+.++.++.+++.++++....... ++...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----------~~~~~ 403 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD-----------GGSAL 403 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT-----------TTCCC
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCCc
Confidence 345555555566666777777664 444 43 24566666666666665554310000 00112
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeecccc--cc-----
Q 008792 139 QIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTNV--GW----- 211 (553)
Q Consensus 139 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~~--~~----- 211 (553)
+.+.+++..++.|++.+...+...++..|.+|++. |++++++++...++|..++|.+.+.+.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 45667778888999999999999999999999998 999999999999999999999999887632 22
Q ss_pred ----hhhhHHHHHHHHHHHHHHHhccc
Q 008792 212 ----GWGFGIPAVAMAIAVVSFFAGSR 234 (553)
Q Consensus 212 ----~~~f~i~~~~~~~~~~~~~~~~~ 234 (553)
+..|++.+++.+++.+.++...+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23355555555555554444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 553 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 0.001 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 39.3 bits (90), Expect = 0.001
Identities = 31/231 (13%), Positives = 62/231 (26%), Gaps = 23/231 (9%)
Query: 1 MAAEEDIHTNDGTIDFGNKPAVKKETGTWKACPYILGNECCERLAYYGINTNLVNYLRFE 60
D + + K + K YI L YGI YL+
Sbjct: 220 KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV 279
Query: 61 LNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASV 120
+ ++ + L+ +++D + ++ + + +
Sbjct: 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP 339
Query: 121 HGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKK 180
G V + + +I G + + KK
Sbjct: 340 AG----------------NPTVDMICMIVIGFLIYGPVMLIGLHALELAP------KKAA 377
Query: 181 SSFFNWFYFSINIGALVAASCLV-WIQTNVGWGWGFGIPAVAMAIAVVSFF 230
+ + +G VAAS +V + GW GF + +AV+
Sbjct: 378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.4 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.26 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.3e-27 Score=248.51 Aligned_cols=163 Identities=15% Similarity=0.072 Sum_probs=138.2
Q ss_pred HHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 008792 50 NTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDK 129 (553)
Q Consensus 50 ~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (553)
.+.+.++++ ++|+|.++.|++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.++++++....
T Consensus 44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~-------- 113 (447)
T d1pw4a_ 44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT-------- 113 (447)
T ss_dssp HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh--------
Confidence 445556776 5899999999999999999999999999999999 999999999999999998887763212
Q ss_pred CCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHHHHHHHHHHhhhhheeeccc-
Q 008792 130 RNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYFSINIGALVAASCLVWIQTN- 208 (553)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~g~l~~~- 208 (553)
.+++.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+.+.++|..++|.+++.+...
T Consensus 114 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 114 --------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp --------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred --------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhh
Confidence 246778999999999999999999999999999988 99999999999999999999988876554
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhcccee
Q 008792 209 VGWGWGFGIPAVAMAIAVVSFFAGSRLY 236 (553)
Q Consensus 209 ~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 236 (553)
.+|++.|++.++..++..+..+...++.
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccc
Confidence 5899999988877766655555544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.3e-24 Score=217.22 Aligned_cols=401 Identities=9% Similarity=-0.069 Sum_probs=241.0
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 008792 30 KACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVI 109 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i 109 (553)
|++|......++..++.....+.+|.|+++++|.|..+.|++.+++.++..++.++.|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 6688888888888888888889999999999999999999999999999999999999999999 999999999888888
Q ss_pred HHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHHH
Q 008792 110 GMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFYF 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 189 (553)
+..+..+..+.+ ......+..+.+.+.+.+...+.......+..+++. .++....+....
T Consensus 86 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 145 (417)
T d1pv7a_ 86 MFAPFFIFIFGP----------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARM 145 (417)
T ss_dssp THHHHHHHTHHH----------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSCCHHHHHH
T ss_pred HHHHHHHhhhhh----------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHHHHHHHhh
Confidence 888777662211 112223344444444444444433333333332222 125666777788
Q ss_pred HHHHHHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHhccceeeccCCCCChHHHHHHhhhhhccchhhhhccccc
Q 008792 190 SINIGALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFAGSRLYRYQKPGGSPLTRICQSLLYETADAEFAVIGSHK 269 (553)
Q Consensus 190 ~~~~G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (553)
....+..++|.+++.+.+. +|+..+........+.....++..++.+..+++.++ ..
T Consensus 146 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------- 202 (417)
T d1pv7a_ 146 FGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANA-VG--------------------- 202 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHH-HH---------------------
T ss_pred hhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhh-hh---------------------
Confidence 8889999999999888764 455555555554444444444444333222111110 00
Q ss_pred cccCCccchhhhccccCCCCcCCCCCCccccccchhhhhHHHHHhHHHHHHHHHHHHHhhccccceEEeeecccCcCCCC
Q 008792 270 LDHTKQLSFLDKAAVETPSDCVKGSVNAWRLCTVTQVEEFKSIIRLLPIWAIGIVFSAVYSQMGTLFVLQGNTMDLHIDN 349 (553)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (553)
+..+.....+... .. .....................+......... .....
T Consensus 203 -~~~~~~~~~~~~~----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--- 253 (417)
T d1pv7a_ 203 -ANHSAFSLKLALE----------------LF--RQPKLWFLSLYVIGVSCTYDVFDQQFANFFT-------SFFAT--- 253 (417)
T ss_dssp -SCCCCCCHHHHHH----------------HT--TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TSSSC---
T ss_pred -hhccccccccccc----------------cc--ccccccchhhhhHHHHHHHHhhhcccccccc-------ccccc---
Confidence 0000000000000 00 0000011111111111111111111100000 00000
Q ss_pred CcccccccccccchhhhHHHHHhHhhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 008792 350 SFEIPSASLSLFDTISVIFWVPIYDRLIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLTAGTLELVRLREVKKHNYYE 429 (553)
Q Consensus 350 ~~~~~~~~~~~~~~~~~i~~~~l~~~i~~~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 429 (553)
...+.... ........+...+...+..++.+| .++++.+..+.++.+++.+.....
T Consensus 254 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~--------------- 309 (417)
T d1pv7a_ 254 -GEQGTRVF-GYVTTMGELLNASIMFFAPLIINR-------IGGKNALLLAGTIMSVRIIGSSFA--------------- 309 (417)
T ss_dssp -HHHHHHHH-HHHHHHHHHHHHHHHTTHHHHHHH-------HCHHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred -cccchhhh-cccccccccccccchhhhhhhhcc-------cccccchhhhHHHHHHhhhccccc---------------
Confidence 00111111 111112222233333333335555 344566777777777777666553
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHhhhhhhhhhcccChhhHHHHHHHH-HHHHHHHHHHhhHhhhhccccccCCCCCCC
Q 008792 430 LKHIPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALS-LTTAALGNYLSTLLVNIVTDFSTRHGKPGW 508 (553)
Q Consensus 430 ~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~ig~~l~~~i~~~~~~~~~~~w 508 (553)
.+.+..++..++.+++.+...+...+++.|..|++.|+++.|+. ++...+|..+++.+.+.+.|..
T Consensus 310 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-------- 376 (417)
T d1pv7a_ 310 -----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-------- 376 (417)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH--------
T ss_pred -----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 35667777888999999999999999999999999999999985 5677899999999999887643
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008792 509 IPDNLNYGNLHYFFWLLALLSVLNLGVYLMVARCYTYKKL 548 (553)
Q Consensus 509 ~~~~~~~~~~~~~f~i~~~~~~v~~~~~~~~~~~~~~~~~ 548 (553)
++...|++.+++.++..++.++..|+.++.+.
T Consensus 377 --------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 377 --------GFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 23456888888888888888888776665444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=3.1e-13 Score=138.52 Aligned_cols=181 Identities=13% Similarity=0.014 Sum_probs=140.7
Q ss_pred ccchhhhhhHHHHHHHHHHHhHHHHHHHhhhhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 008792 29 WKACPYILGNECCERLAYYGINTNLVNYLRFELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYV 108 (553)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~ 108 (553)
.|.++......++.....+++..+.+.|+.+.++.+..+.+...+...+...++.+++|+++||+ +|++..........
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 326 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT 326 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence 35667788888888888999999999999999999999999999999999999999999999999 87665444433333
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCcCCCchhHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHHHH
Q 008792 109 IGMTILTMSASVHGLKPLCDKRNVCHPTGLQIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNWFY 188 (553)
Q Consensus 109 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 188 (553)
+...........+ ..+.+...+..++.|++.+...+....+..|.+|++. |+++.++.+
T Consensus 327 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 385 (447)
T d1pw4a_ 327 LVTIATIVYWMNP---------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTG 385 (447)
T ss_dssp HHHHHHHHTTSCC---------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHH
T ss_pred HHHHHHHHHHhcc---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence 3222222221111 1346667777778888888888888899999999988 999999988
Q ss_pred HHHHH-HHHHhhhhheeecccccchhhhHHHHHHHHHHHHHHHh
Q 008792 189 FSINI-GALVAASCLVWIQTNVGWGWGFGIPAVAMAIAVVSFFA 231 (553)
Q Consensus 189 ~~~~~-G~~~~~~i~g~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 231 (553)
...++ |..++|.+.|++.+..||+..|++.++..+++.++...
T Consensus 386 ~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 386 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 88777 56678999999999999999988777666655554433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=9.9e-13 Score=131.97 Aligned_cols=148 Identities=7% Similarity=-0.048 Sum_probs=124.7
Q ss_pred hhcCCchhhhhhHHHHHHHHHhhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCcCCCch
Q 008792 59 FELNQGNVQAVNNVTNWSGTCYVMPLIGAFLADAYLGRYWTIASFSIIYVIGMTILTMSASVHGLKPLCDKRNVCHPTGL 138 (553)
Q Consensus 59 ~~l~~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (553)
+..+.+....+.......++..++.++.+++.||+ |||+.+.++.++.+++.++.... .
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 310 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA--------------------T 310 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC--------------------C
T ss_pred cccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc--------------------c
Confidence 33455666777778888889999999999999999 99999999999888888888766 3
Q ss_pred hHHHHHHHHHHHhhcccccccccccccccCCCCCchHhHhhhhhhHHH-HHHHHHHHHHHhhhhheeecccccchhhhHH
Q 008792 139 QIAVFFVGLYLIALGTGGIKPCVSSFGADQFDDYDEAEKKKKSSFFNW-FYFSINIGALVAASCLVWIQTNVGWGWGFGI 217 (553)
Q Consensus 139 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~g~l~~~~~~~~~f~i 217 (553)
+.+.+++..++.|++.+...+...+++.|.+|++. |++.++. +++...+|..++|.+.|++.+..|++..|++
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~ 384 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 46777888889999999999999999999999988 9999997 4567789999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcc
Q 008792 218 PAVAMAIAVVSFFAGS 233 (553)
Q Consensus 218 ~~~~~~~~~~~~~~~~ 233 (553)
.+++.++..+...+..
T Consensus 385 ~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 385 LGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8777666655554443
|