Citrus Sinensis ID: 008804
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WWW9 | 558 | D-xylose-proton symporter | yes | no | 0.990 | 0.982 | 0.753 | 0.0 | |
| Q6AWX0 | 503 | D-xylose-proton symporter | no | no | 0.860 | 0.946 | 0.628 | 1e-165 | |
| Q8L6Z8 | 503 | D-xylose-proton symporter | no | no | 0.871 | 0.958 | 0.579 | 1e-155 | |
| C0SPB2 | 457 | Putative metabolite trans | yes | no | 0.783 | 0.947 | 0.359 | 3e-64 | |
| O52733 | 457 | D-xylose-proton symporter | yes | no | 0.777 | 0.940 | 0.342 | 4e-64 | |
| O34718 | 473 | Major myo-inositol transp | no | no | 0.804 | 0.940 | 0.328 | 4e-61 | |
| P46333 | 461 | Probable metabolite trans | no | no | 0.772 | 0.926 | 0.346 | 1e-60 | |
| Q0WUU6 | 526 | Probable polyol transport | no | no | 0.846 | 0.889 | 0.314 | 6e-57 | |
| Q9XIH7 | 511 | Putative polyol transport | no | no | 0.811 | 0.878 | 0.318 | 2e-56 | |
| P0AEP1 | 464 | Galactose-proton symporte | N/A | no | 0.810 | 0.965 | 0.325 | 2e-56 |
| >sp|Q0WWW9|XYLL3_ARATH D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/563 (75%), Positives = 467/563 (82%), Gaps = 15/563 (2%)
Query: 1 MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLL 57
MAF S+ F L H P+ + F S P S LS + F+S L+
Sbjct: 1 MAFAVSVQSHFAIRALKRDHFKNPSPRT---FCSCFKSRPDSSYLSLKERTCFVSKPGLV 57
Query: 58 APK----FNVGAQR--EYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 110
+ F VGA+ E++ GE +S SDA E+FSWSSVILPF+FPALGGLLFGYD
Sbjct: 58 TTRYRHIFQVGAETGGEFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLFGYD 115
Query: 111 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 170
IGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+REL
Sbjct: 116 IGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRREL 175
Query: 171 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 230
IIAAVLY LG+L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISL
Sbjct: 176 IIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISL 235
Query: 231 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 290
KELFIVLGILLG+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQ
Sbjct: 236 KELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQ 295
Query: 291 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 350
GKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGP
Sbjct: 296 GKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGP 355
Query: 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 410
NLKA IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+A
Sbjct: 356 NLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVA 415
Query: 411 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 470
VAKVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 416 VAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 475
Query: 471 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530
WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++L
Sbjct: 476 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLL 535
Query: 531 FIVRTVPETKGLSLEEIESKILK 553
F++ VPETKGLSLEEIESKILK
Sbjct: 536 FVILVVPETKGLSLEEIESKILK 558
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6AWX0|XYLL2_ARATH D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1501), Expect = e-165, Method: Compositional matrix adjust.
Identities = 301/479 (62%), Positives = 371/479 (77%), Gaps = 3/479 (0%)
Query: 74 EDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFN 133
E E I + E +S + ILPFLFPALGGLL+GY+IGATS ATISLQSP LSG +W+N
Sbjct: 28 EREPLIKENHVPENYSVVAAILPFLFPALGGLLYGYEIGATSCATISLQSPSLSGISWYN 87
Query: 134 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 193
LS+V +GLV SGSLYGAL GSI+ ++IAD +GR++ELI+AA+LY +GAL TA AP VL
Sbjct: 88 LSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYLVGALVTALAPTYSVL 147
Query: 194 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 253
++GR++YG+ +GLAMH AP+YIAET PS IRG L+SLKE FIVLG++ GY +GS +N
Sbjct: 148 IIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEFFIVLGMVGGYGIGSLTVNVH 207
Query: 254 GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP 313
GWRYMY S PLA++MGIGMW LP SPRWLLLR +QGKG+++ +E AI +L LR
Sbjct: 208 SGWRYMYATSVPLAVIMGIGMWWLPASPRWLLLRVIQGKGNVENQREAAIKSLCCLRGPA 267
Query: 314 PGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSV 373
D +E Q+ + L L ++ E E +F E+FQG LKA IIGGGLVLFQQITGQPSV
Sbjct: 268 FVDSAAE-QVNEILAEL--TFVGEDKEVTFGELFQGKCLKALIIGGGLVLFQQITGQPSV 324
Query: 374 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 433
LYYA ILQ+AGFSAA DATRVS+++G+ KL+MT +AV +D LGRRPLL+GGV G+ +S
Sbjct: 325 LYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRPLLLGGVGGMVVS 384
Query: 434 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 493
L LL +YY P+VAV ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RGRG+SLAVL
Sbjct: 385 LFLLGSYYLFFSASPVVAVVALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGLSLAVLV 444
Query: 494 NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL 552
NFG+NA+VTFAFSPLKELLGA +F F I L+++FI VPETKGL+LEEIE+K L
Sbjct: 445 NFGANALVTFAFSPLKELLGAGILFCGFGVICVLSLVFIFFIVPETKGLTLEEIEAKCL 503
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L6Z8|XYLL1_ARATH D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 283/488 (57%), Positives = 363/488 (74%), Gaps = 6/488 (1%)
Query: 68 EYSAGG---EDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSP 124
+ S+GG E E + + + E +S + I PFLFPALG LLFGY+IGATS A +SL+SP
Sbjct: 19 DSSSGGITAEKEPLLKENHSPENYSVLAAIPPFLFPALGALLFGYEIGATSCAIMSLKSP 78
Query: 125 ELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT 184
LSG +W++LS+V +G++ SGSLYGAL+GSI+ +S+AD +GR++ELI+AA LY +GA+ T
Sbjct: 79 TLSGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKELILAAFLYLVGAIVT 138
Query: 185 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYF 244
AP +L++GR+ YG+GIGL MH AP+YIAET PSQIRG +ISLKE VLG++ GY
Sbjct: 139 VVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQIRGRMISLKEFSTVLGMVGGYG 198
Query: 245 VGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAIS 304
+GS I + GWRYMY P ++MG GM LP SPRWLLLRA+QG+G+ + ++ AI
Sbjct: 199 IGSLWITVISGWRYMYATILPFPVIMGTGMCWLPASPRWLLLRALQGQGNGENLQQAAIR 258
Query: 305 ALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLF 364
+L +LR D +E Q+ + L L S E E +F E+F+G LKA I GGLVLF
Sbjct: 259 SLCRLRGSVIADSAAE-QVNEILAEL--SLVGEDKEATFGELFRGKCLKALTIAGGLVLF 315
Query: 365 QQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI 424
QQITGQPSVLYYA ILQ+AGFSAAADATR+S+++G+ KLVMT ++V +D +GRRPLL+
Sbjct: 316 QQITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRPLLL 375
Query: 425 GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRG 484
GV G+ +SL LL +YY P VAV+ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RG
Sbjct: 376 CGVSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLSFGPIGWLMISEIFPLKLRG 435
Query: 485 RGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSL 544
RGISLAVL NFG+NA+VTFAFSPLKELLGA +F F I +++ FI VPETKGL+L
Sbjct: 436 RGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFIYYIVPETKGLTL 495
Query: 545 EEIESKIL 552
EEIE+K L
Sbjct: 496 EEIEAKCL 503
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Arabidopsis thaliana (taxid: 3702) |
| >sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 167/464 (35%), Positives = 249/464 (53%), Gaps = 31/464 (6%)
Query: 91 SSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGA 150
S I + F ALGG L+GYD G SGA + ++ L+A GLVVS L GA
Sbjct: 4 QSNIWLYFFGALGGALYGYDTGVISGAILFMKKE-------LGLNAFTEGLVVSSLLVGA 56
Query: 151 LLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210
+LGS + D GRK+ ++ AA+L+ +G L A AP GV+++ R++ GL +G +
Sbjct: 57 ILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTI 116
Query: 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 270
PLY++E P RG L SL +L I +GILL Y V +A WR+M GL+A +LL+
Sbjct: 117 VPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADA-EAWRWMLGLAAVPSLLL 175
Query: 271 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSL 330
IG+ +P SPRWL +E K + I L KLR G K +++I D
Sbjct: 176 LIGILFMPESPRWLFTNG-------EESKAKKI--LEKLR----GTKDIDQEIHDI---- 218
Query: 331 KSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAA 390
+++ EG E+F A I G GL QQ G +++YYA + GF +A
Sbjct: 219 --KEAEKQDEGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSA 276
Query: 391 DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 450
+V IG ++MT +A+ +D +GR+PLL+ G G+ +SL++L+ P
Sbjct: 277 SILG-TVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAA 335
Query: 451 A---VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 507
+ V L +++ + +S+GP+ W+M+ E+FPL RG G ++ L IV+ +
Sbjct: 336 SWTTVICLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPI 395
Query: 508 LKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 551
L E +G +FL++AAI +A LF+ V ETKG SLEEIE +
Sbjct: 396 LMEAIGISYLFLIYAAIGIMAFLFVRFKVTETKGRSLEEIEQDL 439
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Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 255/458 (55%), Gaps = 28/458 (6%)
Query: 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 156
+ F ALGGLLFGYD G SGA + +Q NL + Q G VVS L GA+LG+ +
Sbjct: 10 YFFGALGGLLFGYDTGVISGAILFIQKQ-------MNLGSWQQGWVVSAVLLGAILGAAI 62
Query: 157 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 216
+ +D GR++ L+++A+++ +GAL +A++P L++ R++ G+ +G A P Y+A
Sbjct: 63 IGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLA 122
Query: 217 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 276
E PS RGT+ SL +L ++ GILL Y GWR+M G +A A L+ +G
Sbjct: 123 ELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIPAALLFLGGLI 182
Query: 277 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 336
LP SPR+L+ G L E + + + K + ++++ Q +VS
Sbjct: 183 LPESPRFLV-----KSGHLDEAR-HVLDTMNKHDQVAVNKEINDIQESAKIVS------- 229
Query: 337 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVS 396
G + E+F + IIG GL +FQQ+ G +VLYYA I GF +A A
Sbjct: 230 ----GGWSELFGKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGFGVSA-ALLAH 284
Query: 397 VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG---FPLVAVS 453
+ IG+F +++T IAVA +D + R+ ++ G G+ +SL ++S K GG +++V
Sbjct: 285 IGIGIFNVIVTAIAVAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQTAAIISVI 344
Query: 454 ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 513
AL +Y+ + ++GP+ W+M+ E+FPL RG G S A + N+ +N IV+ F L + G
Sbjct: 345 ALTVYIAFFSATWGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLDFFG 404
Query: 514 AENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 551
++F+ + + F ++ F+ + V ET+ SLE+IE+ +
Sbjct: 405 TGSLFIGYGILCFASIWFVQKKVFETRNRSLEDIEATL 442
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Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Lactobacillus brevis (taxid: 1580) |
| >sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 156/475 (32%), Positives = 255/475 (53%), Gaps = 30/475 (6%)
Query: 84 NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVV 143
N++ S + L GGLLFGYD G +GA + P+ NL+A GLV
Sbjct: 2 NKQGNQMSFLRTIILVSTFGGLLFGYDTGVLNGALPYMGEPD-----QLNLNAFTEGLVT 56
Query: 144 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 203
S L+GA LG++ ++DF GR++ ++ AV++ + + +AP + V+++ R + G+
Sbjct: 57 SSLLFGAALGAVFGGRMSDFNGRRKNILFLAVIFFISTIGCTFAPNVTVMIISRFVLGIA 116
Query: 204 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG----WRYM 259
+G A P Y+AE P + RG +++ EL IV G LL + + +G WR+M
Sbjct: 117 VGGASVTVPAYLAEMSPVESRGRMVTQNELMIVSGQLLAFVFNAILGTTMGDNSHVWRFM 176
Query: 260 YGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLS 319
+++ AL + GM +P SPRWL+ KG KE A+ L K+R +K +
Sbjct: 177 LVIASLPALFLFFGMIRMPESPRWLV-----SKGR----KEDALRVLKKIR----DEKRA 223
Query: 320 ERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFI-IGGGLVLFQQITGQPSVLYYAG 378
++++ + K EK+ L V P ++ + IG G+ + QQITG S++YY
Sbjct: 224 AAELQEIEFAFKKEDQLEKATFKDLSV---PWVRRIVFIGLGIAIVQQITGVNSIMYYGT 280
Query: 379 PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 438
IL+++GF A A ++ GV ++ T++ + + +GRRP+L+ G+ G +LLL+
Sbjct: 281 EILRNSGFQTEA-ALIGNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIG 339
Query: 439 AYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF 495
+ +L G P V +S + ++ Q + P++WLM+SEIFPLR RG G+ + V +
Sbjct: 340 IFSLVLEGSPALPYVVLSLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMGVTVFCLW 399
Query: 496 GSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESK 550
N V+F F L +G F +F + +VLF+ R +PETKGLSLE++E
Sbjct: 400 MVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSVLFVKRFLPETKGLSLEQLEEN 454
|
Major myo-inositol uptake transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 248/459 (54%), Gaps = 32/459 (6%)
Query: 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 156
+ F ALGGLL+GYD G SGA + + + L+ + GLVVS L GA+ GS L
Sbjct: 11 YFFGALGGLLYGYDTGVISGALLFINND-------IPLTTLTEGLVVSMLLLGAIFGSAL 63
Query: 157 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 216
+ +D GR++ + + ++++ +GAL A++ +G+L+ R++ GL +G + P+Y++
Sbjct: 64 SGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLS 123
Query: 217 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 276
E P++IRGTL ++ L IV GILL Y V ++ WR+M GL+A A+L+ IG+
Sbjct: 124 EMAPTKIRGTLGTMNNLMIVTGILLAYIV-NYLFTPFEAWRWMVGLAAVPAVLLLIGIAF 182
Query: 277 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 336
+P SPRWL+ R GS +E RR + IE L +K +
Sbjct: 183 MPESPRWLVKR-----GSEEE------------ARRIMNITHDPKDIEMELAEMKQGEAE 225
Query: 337 EKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV 395
+K + L V + ++ +IG GL +FQQ G +V+YYA I AG +A A
Sbjct: 226 KKE--TTLGVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALG- 282
Query: 396 SVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG---GFPLVAV 452
++ IG+ ++M A+ +D +GR+ LLI G GI LSL LS LG + V
Sbjct: 283 TMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSASTAWMTV 342
Query: 453 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 512
L +Y+ YQ ++GP+ W+++ E+FP + RG L +N IV+ F + +
Sbjct: 343 VFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAM 402
Query: 513 GAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 551
G +F++F+ I L+ F VPETKG SLEEIE+ +
Sbjct: 403 GIAWVFMVFSVICLLSFFFAFYMVPETKGKSLEEIEASL 441
|
Could serve either a nutritional or an osmotic protection function. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q0WUU6|PLT4_ARATH Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 158/503 (31%), Positives = 248/503 (49%), Gaps = 35/503 (6%)
Query: 59 PKFNVGAQR----EYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGAT 114
P +VG ++ + E+ +A + + + V+ F +L +L GYD+G
Sbjct: 17 PAVSVGNKKNKYQRMDSDAEESQNHREAEARNSRTRKYVMACAFFASLNNVLLGYDVGVM 76
Query: 115 SGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAA 174
SGA + +Q ++ VQ +++ +L GS+ +D +GRK + +AA
Sbjct: 77 SGAVLFIQQD-------LKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAA 129
Query: 175 VLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELF 234
+++ GA A AP VL++GR L G+GIGL + AP+YIAE P+ RG S E+F
Sbjct: 130 LVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIF 189
Query: 235 IVLGILLGYFVGSFQINAVG---GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG 291
I LGILLGY V ++ + + WR M + ++ +G + +P SPRWL++
Sbjct: 190 INLGILLGY-VSNYAFSGLSVHISWRIMLAVGILPSVFIGFALCVIPESPRWLVM----- 243
Query: 292 KGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 351
KG + +E L K R D+ ER E + L +++T+ + P+
Sbjct: 244 KGRVDSARE----VLMKTNERD--DEAEERLAE---IQLAAAHTEGSEDRPVWRELLSPS 294
Query: 352 ---LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTW 408
K I+G G+ FQQITG + +YY+ IL+ AG +V +GV K V
Sbjct: 295 PVVRKMLIVGFGIQCFQQITGIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKTVFIL 354
Query: 409 IAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGC---YQIS 465
A +D +GR+PLL G+ L L LS LG L ALL G + I
Sbjct: 355 FATFLIDSVGRKPLLYVSTIGMTLCLFCLSFTLTFLGQGTLGITLALLFVCGNVAFFSIG 414
Query: 466 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIA 525
GP+ W++ SEIFPLR R + +L + N + +V +F + + F +F+ ++
Sbjct: 415 MGPVCWVLTSEIFPLRLRAQASALGAVGNRVCSGLVAMSFLSVSRAITVGGTFFVFSLVS 474
Query: 526 FLAVLFIVRTVPETKGLSLEEIE 548
L+V+F+ VPET G SLE+IE
Sbjct: 475 ALSVIFVYVLVPETSGKSLEQIE 497
|
Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIH7|PLT1_ARATH Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 154/484 (31%), Positives = 250/484 (51%), Gaps = 35/484 (7%)
Query: 84 NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVV 143
N+ ++++ IL ++ ++ GYDIG SGA+I ++ LS VQL +++
Sbjct: 21 NRSRYAFACAILA----SMTSIILGYDIGVMSGASIFIKDD-------LKLSDVQLEILM 69
Query: 144 SGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLG 203
+L+GS +D+LGR+ +++A + GAL +A ++VGR + G+G
Sbjct: 70 GILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIG 129
Query: 204 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF--QINAVGGWRYMYG 261
+G AM AP+Y AE P+ RG L S E+FI +GILLGY F ++ GWR+M G
Sbjct: 130 VGYAMMIAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLG 189
Query: 262 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKG-----SLQEYKEQAISALGKLRRRP--P 314
+ A ++ + IG+ ++P SPRWL+L+ G KE+AIS L ++R P
Sbjct: 190 VGAVPSVFLAIGVLAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDDIKRAVGIP 249
Query: 315 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGG-GLVLFQQITGQPSV 373
D + D ++ + + + K L V P+++ +I G+ QQ +G +V
Sbjct: 250 DD------MTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAV 303
Query: 374 LYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 433
+ Y+ I AG + D +V +GV K + + VD GRR LL+ + G+ LS
Sbjct: 304 VLYSPTIFSKAGLKSKNDQLLATVAVGVVKTLFIVVGTCVVDRFGRRALLLTSMGGMFLS 363
Query: 434 LLLLSAYYKILGGFP--------LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 485
L L ++ P +AV+ ++ +V + I GP++W+ SEIFP+R R +
Sbjct: 364 LTALGTSLTVINRNPGQTLKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQ 423
Query: 486 GISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLE 545
G SL V+ N + I+ F L + L FLLFA +A A +F +PET+G+ LE
Sbjct: 424 GASLGVMLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAAAAWVFFFTFLPETRGIPLE 483
Query: 546 EIES 549
E+E+
Sbjct: 484 EMET 487
|
Plasma membrane sugar-proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0AEP1|GALP_ECOLI Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/476 (32%), Positives = 254/476 (53%), Gaps = 28/476 (5%)
Query: 81 DATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLG 140
DA Q + + AL GLLFG DIG +GA P ++ F +++
Sbjct: 3 DAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGAL-----PFIADE--FQITSHTQE 55
Query: 141 LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLY 200
VVS ++GA +G++ ++ LGRK+ L+I A+L+ G+L +A AP + VL++ R+L
Sbjct: 56 WVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLL 115
Query: 201 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 260
GL +G+A + APLY++E P +IRG++IS+ +L I +GI LG ++ + G WR+M
Sbjct: 116 GLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGI-LGAYLSDTAFSYTGAWRWML 174
Query: 261 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSE 320
G+ A+L+ IG++ LP SPRW + + A L +LR K
Sbjct: 175 GVIIIPAILLLIGVFFLPDSPRWF---------AAKRRFVDAERVLLRLRDTSAEAKREL 225
Query: 321 RQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 380
+I ++L +S + K +F +A +G L + QQ TG ++YYA I
Sbjct: 226 DEIRESLQVKQSGWALFKENSNF--------RRAVFLGVLLQVMQQFTGMNVIMYYAPKI 277
Query: 381 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 440
+ AG++ + +V++G+ ++ T+IA+ VD GR+P L G +A + +L
Sbjct: 278 FELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTM 337
Query: 441 YKILGGFP---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 497
I P A++ LL+++ + +S GP+ W++ SEI PL+ R GI+ + TN+ +
Sbjct: 338 MHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIA 397
Query: 498 NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKILK 553
N IV F + LG N F ++AA+ L +L + VPETK +SLE IE ++K
Sbjct: 398 NMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERNLMK 453
|
Uptake of galactose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Escherichia coli (strain K12) (taxid: 83333) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | ||||||
| 356542274 | 560 | PREDICTED: D-xylose-proton symporter-lik | 0.974 | 0.962 | 0.771 | 0.0 | |
| 356538970 | 552 | PREDICTED: D-xylose-proton symporter-lik | 0.980 | 0.981 | 0.765 | 0.0 | |
| 388498682 | 563 | unknown [Lotus japonicus] | 0.905 | 0.889 | 0.811 | 0.0 | |
| 42568650 | 558 | D-xylose-proton symporter-like 3 [Arabid | 0.990 | 0.982 | 0.753 | 0.0 | |
| 110740547 | 558 | D-xylose-H+ symporter - like protein [Ar | 0.990 | 0.982 | 0.751 | 0.0 | |
| 297796853 | 559 | hypothetical protein ARALYDRAFT_919128 [ | 0.996 | 0.985 | 0.754 | 0.0 | |
| 449455084 | 585 | PREDICTED: D-xylose-proton symporter-lik | 0.987 | 0.933 | 0.759 | 0.0 | |
| 225434857 | 561 | PREDICTED: putative vacuolar glucose tra | 0.978 | 0.964 | 0.792 | 0.0 | |
| 255558992 | 505 | sugar transporter, putative [Ricinus com | 0.907 | 0.994 | 0.854 | 0.0 | |
| 77999788 | 552 | putative sugar transporter [Nicotiana la | 0.875 | 0.876 | 0.830 | 0.0 |
| >gi|356542274|ref|XP_003539594.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/555 (77%), Positives = 477/555 (85%), Gaps = 16/555 (2%)
Query: 9 PPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLS----TKPLL----APK 60
P F N H + KS S+P + N+ L+ T PLL APK
Sbjct: 12 PLFNFNPLHHRRIKRPKSLL------SSPRNSPRLVSSINDHLALTRVTYPLLQSHSAPK 65
Query: 61 --FNVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGAT 118
F+VG Q+EYS G ES +SDAT QE FSWSSV+LPFLFPALGGLLFGYDIGATSGAT
Sbjct: 66 RRFHVGVQKEYSDGESSESIVSDATYQEEFSWSSVVLPFLFPALGGLLFGYDIGATSGAT 125
Query: 119 ISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 178
ISLQSPELSG +WFNLSA+QLGLVVSGSLYGALLGS++ ++IADFLGRK++LI AA+LY
Sbjct: 126 ISLQSPELSGISWFNLSAIQLGLVVSGSLYGALLGSLVAFAIADFLGRKKQLITAALLYL 185
Query: 179 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 238
G + TAYAP LGVLL GRL+YGLGIGLAMHGAPLYIAETCPSQIRGTL+SLKELFIVLG
Sbjct: 186 FGGVITAYAPELGVLLAGRLIYGLGIGLAMHGAPLYIAETCPSQIRGTLVSLKELFIVLG 245
Query: 239 ILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEY 298
ILLGYFVGSF I VGGWR+MYG SAP+A+LMG+GMW+LP SPRWLLLRAVQGKGS Q+
Sbjct: 246 ILLGYFVGSFLIETVGGWRFMYGFSAPVAVLMGLGMWTLPNSPRWLLLRAVQGKGSFQDL 305
Query: 299 KEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIG 358
KEQAI++L KLR RPPGDK SE+QIE+TLVSLKS Y D++SEG+FLEVFQGPNLKAFIIG
Sbjct: 306 KEQAIASLSKLRGRPPGDKESEKQIEETLVSLKSVYADQESEGNFLEVFQGPNLKAFIIG 365
Query: 359 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 418
GGLVLFQQITGQPSVLYYAGPILQSAGFSAA+DAT+VSVVIG+FKL+MTWIAV KVDDLG
Sbjct: 366 GGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIAVLKVDDLG 425
Query: 419 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF 478
RRPLLIGGV GIALSL+LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWLMVSE+F
Sbjct: 426 RRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWLMVSEVF 485
Query: 479 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 538
PLRTRG+GISLAVLTNF SNA+VTFAFSPLKE LGAEN+FLLF AIA L++LFI+ +VPE
Sbjct: 486 PLRTRGKGISLAVLTNFASNAVVTFAFSPLKEFLGAENLFLLFGAIATLSLLFIIFSVPE 545
Query: 539 TKGLSLEEIESKILK 553
TKG+SLE+IESKILK
Sbjct: 546 TKGMSLEDIESKILK 560
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538970|ref|XP_003537973.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/563 (76%), Positives = 476/563 (84%), Gaps = 21/563 (3%)
Query: 1 MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLS----TKPL 56
MA T+ +LN H Q T KS +NP S NN L+ T PL
Sbjct: 1 MASTTLFSFRLSLNPLHHQQTTRPKSLL--SSPRTNPRLVS----SINNHLALTRVTYPL 54
Query: 57 L----APK--FNVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 110
L APK F+V YS G ES +SDAT QE FSWSSVILPFLFPALGGLLFGYD
Sbjct: 55 LQSHSAPKRRFHV-----YSDGESSESLVSDATYQEEFSWSSVILPFLFPALGGLLFGYD 109
Query: 111 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 170
IGATSGATISLQSPELSG +WF LSA+QLGLVVSGSLYGALLGS++ ++IADFLGRK++L
Sbjct: 110 IGATSGATISLQSPELSGISWFKLSAIQLGLVVSGSLYGALLGSLVAFAIADFLGRKKQL 169
Query: 171 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 230
I AA+LY G + TAYAP LGVLL GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL+SL
Sbjct: 170 ITAALLYLFGGVITAYAPELGVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLVSL 229
Query: 231 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 290
KELFIVLGILLGYFVGSF I VGGWR+MYG SAP+A+LMG+GM +LP SPRWLLLRAVQ
Sbjct: 230 KELFIVLGILLGYFVGSFLIETVGGWRFMYGFSAPVAVLMGLGMLTLPNSPRWLLLRAVQ 289
Query: 291 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 350
GKGS Q+ KE+AI +L KLR RPPGDK SERQ+E+TLVSLKS+Y D++SEG+FLEVFQGP
Sbjct: 290 GKGSFQDLKEKAIFSLSKLRGRPPGDKESERQVEETLVSLKSAYADKESEGNFLEVFQGP 349
Query: 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 410
NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAA+DAT+VSVVIG+FKL+MTWIA
Sbjct: 350 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAASDATKVSVVIGLFKLLMTWIA 409
Query: 411 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 470
V KVDDLGRRPLLIGGV GIALSL+LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 410 VLKVDDLGRRPLLIGGVSGIALSLVLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 469
Query: 471 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530
WLMVSE+FPLRTRG+GISLAVLTNF SNA+VTFAFSPLKE LGAEN+FLLF AIA L++L
Sbjct: 470 WLMVSEVFPLRTRGKGISLAVLTNFASNAVVTFAFSPLKEFLGAENLFLLFGAIAILSLL 529
Query: 531 FIVRTVPETKGLSLEEIESKILK 553
FI+ +VPETKGLSLE+IESKILK
Sbjct: 530 FIIFSVPETKGLSLEDIESKILK 552
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388498682|gb|AFK37407.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/509 (81%), Positives = 457/509 (89%), Gaps = 8/509 (1%)
Query: 53 TKPLL----AP--KFNVGAQRE--YSAGGEDESRISDATNQEAFSWSSVILPFLFPALGG 104
T PLL AP +F+V +Q++ YSAGG+ E SDA QE FS SSVILPFLFPALGG
Sbjct: 55 TYPLLPSSSAPNSRFHVRSQKQKVYSAGGKSEPLASDAKYQEEFSLSSVILPFLFPALGG 114
Query: 105 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL 164
LLFGYDIGATSGATISLQSPELSG TWFNLS++QLGLVVSGSLYGALLGSIL +++ADFL
Sbjct: 115 LLFGYDIGATSGATISLQSPELSGITWFNLSSIQLGLVVSGSLYGALLGSILAFAVADFL 174
Query: 165 GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR 224
GRKR+LI+AA+LY LG TA AP L VLL GRLLYGLGIGLAMHGAPLYIAETCPSQIR
Sbjct: 175 GRKRQLIVAALLYILGGAITAAAPELNVLLAGRLLYGLGIGLAMHGAPLYIAETCPSQIR 234
Query: 225 GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWL 284
GTL+SLKELFIVLGIL GYFVGSFQI++VGGWR+MYG SAP+A+LMG+GMW+LP SPRWL
Sbjct: 235 GTLVSLKELFIVLGILGGYFVGSFQISSVGGWRFMYGFSAPVAVLMGLGMWTLPASPRWL 294
Query: 285 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 344
LL+AVQGKGS Q+ KE+AI +L KLR RPPGDK SERQIE+TLVSLKS+Y D++SEG+FL
Sbjct: 295 LLKAVQGKGSFQDLKEKAIFSLSKLRGRPPGDKESERQIEETLVSLKSAYKDQESEGNFL 354
Query: 345 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKL 404
EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAG ILQSAGFSAA+DAT+VSVVIG+FKL
Sbjct: 355 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGSILQSAGFSAASDATKVSVVIGLFKL 414
Query: 405 VMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQI 464
MTW+AV KVDDLGRRPLLI GV GI LSL LLSAYYK LGGFPLVAV ALLLYVGCYQI
Sbjct: 415 QMTWVAVLKVDDLGRRPLLIAGVSGIGLSLGLLSAYYKFLGGFPLVAVGALLLYVGCYQI 474
Query: 465 SFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 524
SFGPISWLMVSE FP+RTRGRGISLAVLTNF SNA+VTFAFSPLKELLGAEN+FLLF AI
Sbjct: 475 SFGPISWLMVSETFPIRTRGRGISLAVLTNFASNAVVTFAFSPLKELLGAENLFLLFGAI 534
Query: 525 AFLAVLFIVRTVPETKGLSLEEIESKILK 553
+ +A+LF++ +VPETKGLSLEEIESKILK
Sbjct: 535 SLVALLFVIFSVPETKGLSLEEIESKILK 563
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42568650|ref|NP_200733.2| D-xylose-proton symporter-like 3 [Arabidopsis thaliana] gi|117940085|sp|Q0WWW9.2|XYLL3_ARATH RecName: Full=D-xylose-proton symporter-like 3, chloroplastic; Flags: Precursor gi|9759246|dbj|BAB09770.1| sugar transporter-like protein [Arabidopsis thaliana] gi|51536478|gb|AAU05477.1| At5g59250 [Arabidopsis thaliana] gi|56381949|gb|AAV85693.1| At5g59250 [Arabidopsis thaliana] gi|332009779|gb|AED97162.1| D-xylose-proton symporter-like 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/563 (75%), Positives = 467/563 (82%), Gaps = 15/563 (2%)
Query: 1 MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLL 57
MAF S+ F L H P+ + F S P S LS + F+S L+
Sbjct: 1 MAFAVSVQSHFAIRALKRDHFKNPSPRT---FCSCFKSRPDSSYLSLKERTCFVSKPGLV 57
Query: 58 APK----FNVGAQR--EYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 110
+ F VGA+ E++ GE +S SDA E+FSWSSVILPF+FPALGGLLFGYD
Sbjct: 58 TTRYRHIFQVGAETGGEFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLFGYD 115
Query: 111 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 170
IGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+REL
Sbjct: 116 IGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRREL 175
Query: 171 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 230
IIAAVLY LG+L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISL
Sbjct: 176 IIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISL 235
Query: 231 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 290
KELFIVLGILLG+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQ
Sbjct: 236 KELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQ 295
Query: 291 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 350
GKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGP
Sbjct: 296 GKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGP 355
Query: 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 410
NLKA IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+A
Sbjct: 356 NLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVA 415
Query: 411 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 470
VAKVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 416 VAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 475
Query: 471 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530
WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++L
Sbjct: 476 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLL 535
Query: 531 FIVRTVPETKGLSLEEIESKILK 553
F++ VPETKGLSLEEIESKILK
Sbjct: 536 FVILVVPETKGLSLEEIESKILK 558
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740547|dbj|BAE98379.1| D-xylose-H+ symporter - like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/563 (75%), Positives = 467/563 (82%), Gaps = 15/563 (2%)
Query: 1 MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLL 57
MAF S+ F L H P+ + F S P S LS + F+S L+
Sbjct: 1 MAFAVSVQSHFAIRALKRDHFKNPSPRT---FCSCFKSRPDSSYLSLKERTCFVSKPGLV 57
Query: 58 APK----FNVGAQR--EYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 110
+ F VGA+ +++ GE +S SDA E+FSWSSVILPF+FPALGGLLFGYD
Sbjct: 58 TTRYRHIFQVGAETGGDFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLFGYD 115
Query: 111 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 170
IGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+REL
Sbjct: 116 IGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRREL 175
Query: 171 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 230
IIAAVLY LG+L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISL
Sbjct: 176 IIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISL 235
Query: 231 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 290
KELFIVLGILLG+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQ
Sbjct: 236 KELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQ 295
Query: 291 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 350
GKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGP
Sbjct: 296 GKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGP 355
Query: 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 410
NLKA IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+A
Sbjct: 356 NLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVA 415
Query: 411 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 470
VAKVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPIS
Sbjct: 416 VAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPIS 475
Query: 471 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530
WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++L
Sbjct: 476 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLL 535
Query: 531 FIVRTVPETKGLSLEEIESKILK 553
F++ VPETKGLSLEEIESKILK
Sbjct: 536 FVILVVPETKGLSLEEIESKILK 558
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796853|ref|XP_002866311.1| hypothetical protein ARALYDRAFT_919128 [Arabidopsis lyrata subsp. lyrata] gi|297312146|gb|EFH42570.1| hypothetical protein ARALYDRAFT_919128 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/561 (75%), Positives = 461/561 (82%), Gaps = 10/561 (1%)
Query: 1 MAFTSSIGPPFTLNLPHLHQPTSQKSFYFRCKANSNPSSKSLSPFKANNFLSTKPLLA-- 58
MAF S+ F + Q S C + S S K L +K L
Sbjct: 1 MAFAVSVQSHFAIRDLKRDQFKKNPSPRTSCSCFKSRSDSSYLSLKERTCLVSKLGLVTT 60
Query: 59 ---PKFNVGAQR--EYSAGGE-DESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIG 112
KF VGA E + GGE +S SDA E+FSWSSVILPF+FPALGGLLFGYDIG
Sbjct: 61 RYRAKFQVGAGTGGELADGGEVADSIASDAL--ESFSWSSVILPFIFPALGGLLFGYDIG 118
Query: 113 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII 172
ATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+RELII
Sbjct: 119 ATSGATLSLQSPVLSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRELII 178
Query: 173 AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKE 232
AAVLY LG+L T AP L +LLVGRLLYG GIGLAMHGAPLYIAETCPSQIRGTLISLKE
Sbjct: 179 AAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLISLKE 238
Query: 233 LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGK 292
LFIVLGILLG+ VGSFQI+ VGGWRYMYG P+ALLMG+GMWSLP SPRWLLLRAVQGK
Sbjct: 239 LFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAVQGK 298
Query: 293 GSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 352
G LQEYKE+A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQGPNL
Sbjct: 299 GQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQGPNL 358
Query: 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVA 412
KA IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+AVA
Sbjct: 359 KALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVA 418
Query: 413 KVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL 472
KVDDLGRRPLLIGGV GIALSL LLSAYYK LGGFPLVAV ALLLYVGCYQISFGPISWL
Sbjct: 419 KVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPISWL 478
Query: 473 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 532
MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF IA +++LF+
Sbjct: 479 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFV 538
Query: 533 VRTVPETKGLSLEEIESKILK 553
+ VPETKGLSLEEIESKILK
Sbjct: 539 ILVVPETKGLSLEEIESKILK 559
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455084|ref|XP_004145283.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Cucumis sativus] gi|449470902|ref|XP_004153144.1| PREDICTED: D-xylose-proton symporter-like 3, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/570 (75%), Positives = 483/570 (84%), Gaps = 24/570 (4%)
Query: 1 MAFTSSIGPPFTLNLPH-----LHQPTSQKSFYFRCKANSNPSSKSL-SPFKAN------ 48
MAF+ I P FT H H SQ F +S P++ L S F AN
Sbjct: 23 MAFSLPIRPLFTPKPSHSYTRKAHLKASQVLF------SSTPTTPLLVSSFTANLEASFH 76
Query: 49 NFLST----KPLLAPKFNVGAQREYSAGGEDESRI-SDATNQEAFSWSSVILPFLFPALG 103
N +S+ K L PK G + +YS+G E+ + S+A N+E FSWSSVILPFLFPALG
Sbjct: 77 NPISSSSVSKLRLIPKVG-GDRADYSSGEEETKSVDSEAANEEEFSWSSVILPFLFPALG 135
Query: 104 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF 163
GLLFGYDIGATSGAT+SLQSPELSGT+WFNLSAVQLGLVVSGSLYGALLGS+LVY IADF
Sbjct: 136 GLLFGYDIGATSGATLSLQSPELSGTSWFNLSAVQLGLVVSGSLYGALLGSLLVYPIADF 195
Query: 164 LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQI 223
LGR+RELIIAA LYA+G+LTTAY+P LG LL GRLLYGLGIGLAMHGAPLYIAETCPS+I
Sbjct: 196 LGRRRELIIAAGLYAIGSLTTAYSPDLGFLLAGRLLYGLGIGLAMHGAPLYIAETCPSKI 255
Query: 224 RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRW 283
RGTL+SLKELFIVLGIL+GY GS QINAVGGWRYMYGLSAP+A +MG+GMW LPPSPRW
Sbjct: 256 RGTLVSLKELFIVLGILMGYLFGSLQINAVGGWRYMYGLSAPVAFMMGLGMWLLPPSPRW 315
Query: 284 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF 343
LLLRA QGK Q+ KE+AI+AL KLR RPPGDK+SE+QIE+T +SLKS+Y++++SEGS
Sbjct: 316 LLLRAAQGKAPSQDSKEEAIAALSKLRGRPPGDKVSEKQIEETFLSLKSAYSEQESEGSI 375
Query: 344 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFK 403
EV QGP+LKAFIIGGGLVLFQQITGQPSVLYYAGPILQ+AGF+AA DATRVSVVIGVFK
Sbjct: 376 WEVLQGPSLKAFIIGGGLVLFQQITGQPSVLYYAGPILQNAGFAAATDATRVSVVIGVFK 435
Query: 404 LVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQ 463
L+MTW+AV KVDDLGRRPLLIGGV GIALSLLLLSAYYK LGGFP+VAV ALLLYVGCYQ
Sbjct: 436 LLMTWVAVLKVDDLGRRPLLIGGVSGIALSLLLLSAYYKFLGGFPIVAVGALLLYVGCYQ 495
Query: 464 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAA 523
ISFGPISWLMVSEIFPLRTRG+GISLAVLTNFGSNAIVTFAFSPLKELLGAEN+FLLF A
Sbjct: 496 ISFGPISWLMVSEIFPLRTRGKGISLAVLTNFGSNAIVTFAFSPLKELLGAENLFLLFGA 555
Query: 524 IAFLAVLFIVRTVPETKGLSLEEIESKILK 553
IA L++LF+V VPETKGLSLE+IESKILK
Sbjct: 556 IALLSLLFVVLKVPETKGLSLEDIESKILK 585
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434857|ref|XP_002280634.1| PREDICTED: putative vacuolar glucose transporter [Vitis vinifera] gi|310877894|gb|ADP37178.1| putative vacuolar glucose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/553 (79%), Positives = 475/553 (85%), Gaps = 12/553 (2%)
Query: 11 FTLNLPH----LHQPTSQKSFYFRCKANSNPSSKSL--SPFKANNFLSTKPLLAPK---- 60
F L L H LH P +S +F K NS+PSS S FK+ ++ KP L
Sbjct: 11 FNLKLSHSHPALHHPKHSQSLFF--KFNSHPSSPFFYGSQFKSQTYMPPKPPLLQSSRLV 68
Query: 61 FNVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATIS 120
F VGAQ E S+G E S SD QE FSWSSV+LPFLFPALGGLLFGYDIGATSGATIS
Sbjct: 69 FKVGAQSEGSSGEETRSLDSDVKYQEVFSWSSVVLPFLFPALGGLLFGYDIGATSGATIS 128
Query: 121 LQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALG 180
LQSPELSG TWF LSAVQLGLVVSGSLYGALLGSILVY IADFLGR+ ELI AA+LYALG
Sbjct: 129 LQSPELSGITWFELSAVQLGLVVSGSLYGALLGSILVYPIADFLGRRGELITAAILYALG 188
Query: 181 ALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL 240
L TA AP L VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKEL IVLGIL
Sbjct: 189 GLITASAPELDVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELLIVLGIL 248
Query: 241 LGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKE 300
LGYFVGSF+IN VGGWRYMYGLSAP+A LMG+G+W+LPPSPRWLLLRAVQGKGSLQE KE
Sbjct: 249 LGYFVGSFEINEVGGWRYMYGLSAPIASLMGLGLWTLPPSPRWLLLRAVQGKGSLQENKE 308
Query: 301 QAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 360
+AI AL KLR RP GDK+S+ QIE TL SLKS+YTD++SEGSFLEVFQGP+LKAFIIGGG
Sbjct: 309 KAIHALSKLRGRPAGDKVSDMQIEHTLASLKSAYTDQESEGSFLEVFQGPSLKAFIIGGG 368
Query: 361 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR 420
LVL QQITGQPSVLY+AG ILQ+AGFSAA+DATRVSV+IG FKL+MT IAV KVDD+GRR
Sbjct: 369 LVLSQQITGQPSVLYFAGSILQTAGFSAASDATRVSVLIGFFKLLMTGIAVLKVDDIGRR 428
Query: 421 PLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL 480
PLLIGGV G+ALSLLLLSAYYK LGGFP+VAV+ALLLYVGCYQISFGPISWLMVSEIFPL
Sbjct: 429 PLLIGGVGGLALSLLLLSAYYKFLGGFPVVAVAALLLYVGCYQISFGPISWLMVSEIFPL 488
Query: 481 RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETK 540
RTRGRGISLAVLTNFGSNAIVTFAFSPL+ELLGAEN+FLLF IA L++LF++ VPETK
Sbjct: 489 RTRGRGISLAVLTNFGSNAIVTFAFSPLEELLGAENLFLLFGIIALLSLLFVIVYVPETK 548
Query: 541 GLSLEEIESKILK 553
GLSLEEIESKILK
Sbjct: 549 GLSLEEIESKILK 561
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558992|ref|XP_002520519.1| sugar transporter, putative [Ricinus communis] gi|223540361|gb|EEF41932.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/503 (85%), Positives = 466/503 (92%), Gaps = 1/503 (0%)
Query: 52 STKPLLA-PKFNVGAQREYSAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYD 110
S +P ++ P+ +G EYSAG E ES + D++ QEAFSWSSVILPFLFPALGGLLFGYD
Sbjct: 3 SKQPFISSPRPRLGLSVEYSAGEEAESVVPDSSPQEAFSWSSVILPFLFPALGGLLFGYD 62
Query: 111 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 170
IGATSGATISLQSPELSGTTWFNLSA+QLGLVVSGSLYGALLGS+LVY IADFLGR+REL
Sbjct: 63 IGATSGATISLQSPELSGTTWFNLSAIQLGLVVSGSLYGALLGSLLVYPIADFLGRRREL 122
Query: 171 IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 230
IIAAVLY LG L TAYAP LG+LL GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL
Sbjct: 123 IIAAVLYMLGGLITAYAPSLGILLGGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 182
Query: 231 KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 290
KELFIVLGIL+GYFVGSF+I+AVGGWRYMYGL AP+AL+MG+GM SLPPSPRWLLLRAVQ
Sbjct: 183 KELFIVLGILMGYFVGSFEISAVGGWRYMYGLGAPIALIMGLGMLSLPPSPRWLLLRAVQ 242
Query: 291 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 350
G+ SLQEYKE+A+ AL KLR RP GDK SE+QIEDTLVSLKS+Y++E+SEGS LEVFQGP
Sbjct: 243 GRASLQEYKEKAVLALSKLRGRPLGDKESEKQIEDTLVSLKSAYSEEESEGSILEVFQGP 302
Query: 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIA 410
+LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSV+IG+FKLVMTWIA
Sbjct: 303 SLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVIIGLFKLVMTWIA 362
Query: 411 VAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 470
V KVDDLGRRPLLIGGV GIALSL LLSAYYK+LGGFP+VAV+ALLLYVG YQISFGPIS
Sbjct: 363 VLKVDDLGRRPLLIGGVGGIALSLFLLSAYYKVLGGFPVVAVAALLLYVGSYQISFGPIS 422
Query: 471 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530
WLMVSEIFPLRTRG+GISLAVLTNFGSNAIVTFAFSPLKELLGAEN+FLLF AIA LA+L
Sbjct: 423 WLMVSEIFPLRTRGKGISLAVLTNFGSNAIVTFAFSPLKELLGAENLFLLFGAIALLALL 482
Query: 531 FIVRTVPETKGLSLEEIESKILK 553
F + VPETKGLSLEEIESKILK
Sbjct: 483 FAIVYVPETKGLSLEEIESKILK 505
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|77999788|gb|ABB17074.1| putative sugar transporter [Nicotiana langsdorffii x Nicotiana sanderae] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/484 (83%), Positives = 441/484 (91%)
Query: 70 SAGGEDESRISDATNQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGT 129
S+G E ES +++ E FSWSSVILPFLFPALGGLLFGYDIGATSGATISLQS ELSGT
Sbjct: 69 SSGEEAESNNAESAYLEEFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSAELSGT 128
Query: 130 TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG 189
TW+N SAVQLGLVVSGSLYGAL GSIL Y ADFLGR+RELIIAA+LYA G TAYAPG
Sbjct: 129 TWYNFSAVQLGLVVSGSLYGALFGSILAYPFADFLGRRRELIIAALLYAAGGSLTAYAPG 188
Query: 190 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 249
LG LL+GRL+YGLGIGLAMHGAPLYIAETCP QIRGTL+SLKEL IVLGILLGYFVGS++
Sbjct: 189 LGALLLGRLVYGLGIGLAMHGAPLYIAETCPPQIRGTLVSLKELAIVLGILLGYFVGSYE 248
Query: 250 INAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKL 309
IN VGGWRYM+GLSAP+ALLMG+GMWSLPPSPRWLLLRA+Q KG LQEYKE+A+ AL KL
Sbjct: 249 INVVGGWRYMFGLSAPIALLMGLGMWSLPPSPRWLLLRAIQSKGPLQEYKEKAMGALSKL 308
Query: 310 RRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITG 369
R RP GDK+SE+QIEDT++SLK++Y+DE++EG+FLEVFQGP+LKAFIIGGGLVLFQQITG
Sbjct: 309 RGRPAGDKVSEKQIEDTIISLKTAYSDEEAEGNFLEVFQGPSLKAFIIGGGLVLFQQITG 368
Query: 370 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 429
QPSVLYYAG ILQSAGFSAAADA RVSVVIG+FK +MT +AV K DDLGRRPLLIGGV G
Sbjct: 369 QPSVLYYAGSILQSAGFSAAADAARVSVVIGIFKSLMTAVAVLKADDLGRRPLLIGGVSG 428
Query: 430 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 489
IALSL LLSAYYK LG FP VAV+ALLLYVGCYQISFGPISWLMVSEIFPLRTRG+GISL
Sbjct: 429 IALSLFLLSAYYKFLGSFPFVAVAALLLYVGCYQISFGPISWLMVSEIFPLRTRGKGISL 488
Query: 490 AVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIES 549
AVLTNFGSNAIVTFAFSPLKE LGAEN+FLLF AIA L++LF+V +VPETKGLSLEEIES
Sbjct: 489 AVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGAIALLSLLFVVTSVPETKGLSLEEIES 548
Query: 550 KILK 553
KILK
Sbjct: 549 KILK 552
|
Source: Nicotiana langsdorffii x Nicotiana sanderae Species: Nicotiana langsdorffii x Nicotiana sanderae Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | ||||||
| TAIR|locus:2168494 | 558 | AT5G59250 [Arabidopsis thalian | 0.989 | 0.980 | 0.625 | 3.8e-165 | |
| TAIR|locus:2148201 | 503 | AT5G17010 [Arabidopsis thalian | 0.797 | 0.876 | 0.538 | 9.4e-114 | |
| TAIR|locus:2097780 | 503 | VGT1 "vacuolar glucose transpo | 0.867 | 0.954 | 0.475 | 1.5e-106 | |
| TIGR_CMR|CBU_0347 | 463 | CBU_0347 "d-xylose-proton symp | 0.723 | 0.863 | 0.330 | 9.8e-48 | |
| UNIPROTKB|F1MIV2 | 621 | SLC2A12 "Solute carrier family | 0.533 | 0.475 | 0.320 | 1.8e-38 | |
| UNIPROTKB|F1P4J7 | 561 | SLC2A12 "Uncharacterized prote | 0.535 | 0.527 | 0.305 | 4.8e-38 | |
| UNIPROTKB|Q5J316 | 621 | SLC2A12 "Solute carrier family | 0.533 | 0.475 | 0.314 | 6.7e-38 | |
| UNIPROTKB|Q8TD20 | 617 | SLC2A12 "Solute carrier family | 0.533 | 0.478 | 0.314 | 1.1e-37 | |
| MGI|MGI:3052471 | 622 | Slc2a12 "solute carrier family | 0.533 | 0.474 | 0.320 | 2.2e-36 | |
| UNIPROTKB|F1PA43 | 614 | SLC2A12 "Uncharacterized prote | 0.533 | 0.480 | 0.308 | 2.5e-36 |
| TAIR|locus:2168494 AT5G59250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1607 (570.8 bits), Expect = 3.8e-165, P = 3.8e-165
Identities = 353/564 (62%), Positives = 387/564 (68%)
Query: 1 MAFTSSIGPPFT---LNLPHLHQPTSQKSFYFRCKA-NSNPSSKSLSPFKANNFLSTKPL 56
MAF S+ F L H P S ++F C S P S LS + F+S L
Sbjct: 1 MAFAVSVQSHFAIRALKRDHFKNP-SPRTF---CSCFKSRPDSSYLSLKERTCFVSKPGL 56
Query: 57 LAPK----FNVGAQR--EYSAGGE-DESRISDATNQEAFSWSSVIXXXXXXXXXXXXXXY 109
+ + F VGA+ E++ GE +S SDA E+FSWSSVI Y
Sbjct: 57 VTTRYRHIFQVGAETGGEFADSGEVADSLASDAP--ESFSWSSVILPFIFPALGGLLFGY 114
Query: 110 DIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRE 169
DIGATSGAT+SLQSP LSGTTWFN S VQLGLVVSGSLYGALLGSI VY +ADFLGR+RE
Sbjct: 115 DIGATSGATLSLQSPALSGTTWFNFSPVQLGLVVSGSLYGALLGSISVYGVADFLGRRRE 174
Query: 170 LIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLIS 229
LII AMHGAPLYIAETCPSQIRGTLIS
Sbjct: 175 LIIAAVLYLLGSLITGCAPDLNILLVGRLLYGFGIGLAMHGAPLYIAETCPSQIRGTLIS 234
Query: 230 LKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAV 289
LKELFIVLGILLG+ VGSFQI+ VGGWRYMYG P+ALLMG+GM AV
Sbjct: 235 LKELFIVLGILLGFSVGSFQIDVVGGWRYMYGFGTPVALLMGLGMWSLPASPRWLLLRAV 294
Query: 290 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG 349
QGKG LQEYKE+A+ AL KLR RPPGDK+SE+ ++D +S+K++Y DEKS G+FLEVFQG
Sbjct: 295 QGKGQLQEYKEKAMLALSKLRGRPPGDKISEKLVDDAYLSVKTAYEDEKSGGNFLEVFQG 354
Query: 350 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWI 409
PNLKA IGGGLVLFQQITGQPSVLYYAG ILQ+AGFSAAADATRVSV+IGVFKL+MTW+
Sbjct: 355 PNLKALTIGGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWV 414
Query: 410 AVAKVDDLGRRPLLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPI 469
AVAKVDDLGRRPLLIGGV GFPLVAV ALLLYVGCYQISFGPI
Sbjct: 415 AVAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVGALLLYVGCYQISFGPI 474
Query: 470 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXXX 529
SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE LGAEN
Sbjct: 475 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSL 534
Query: 530 XXXXRTVPETKGLSLEEIESKILK 553
VPETKGLSLEEIESKILK
Sbjct: 535 LFVILVVPETKGLSLEEIESKILK 558
|
|
| TAIR|locus:2148201 AT5G17010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
Identities = 239/444 (53%), Positives = 290/444 (65%)
Query: 109 YDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKR 168
Y+IGATS ATISLQSP LSG +W+NLS+V +GLV SGSLYGAL GSI+ ++IAD +GR++
Sbjct: 63 YEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRK 122
Query: 169 ELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLI 228
ELI+ AMH AP+YIAET PS IRG L+
Sbjct: 123 ELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLV 182
Query: 229 SLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXA 288
SLKE FIVLG++ GY +GS +N GWRYMY S PLA++MGIGM
Sbjct: 183 SLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRWLLLRV 242
Query: 289 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 348
+QGKG+++ +E AI +L LR D +E Q+ + L L ++ E E +F E+FQ
Sbjct: 243 IQGKGNVENQREAAIKSLCCLRGPAFVDSAAE-QVNEILAEL--TFVGEDKEVTFGELFQ 299
Query: 349 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTW 408
G LKA IIGGGLVLFQQITGQPSVLYYA ILQ+AGFSAA DATRVS+++G+ KL+MT
Sbjct: 300 GKCLKALIIGGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTG 359
Query: 409 IAVAKVDDLGRRPLLIGGVCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGP 468
+AV +D LGRRPLL+GGV P+VAV ALLLYVGCYQ+SFGP
Sbjct: 360 VAVVVIDRLGRRPLLLGGVGGMVVSLFLLGSYYLFFSASPVVAVVALLLYVGCYQLSFGP 419
Query: 469 ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXX 528
I WLM+SEIFPL+ RGRG+SLAVL NFG+NA+VTFAFSPLKELLGA
Sbjct: 420 IGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICVLS 479
Query: 529 XXXXXRTVPETKGLSLEEIESKIL 552
VPETKGL+LEEIE+K L
Sbjct: 480 LVFIFFIVPETKGLTLEEIEAKCL 503
|
|
| TAIR|locus:2097780 VGT1 "vacuolar glucose transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 231/486 (47%), Positives = 296/486 (60%)
Query: 70 SAGG---EDESRISDATNQEAFSWSSVIXXXXXXXXXXXXXXYDIGATSGATISLQSPEL 126
S+GG E E + + + E +S + I Y+IGATS A +SL+SP L
Sbjct: 21 SSGGITAEKEPLLKENHSPENYSVLAAIPPFLFPALGALLFGYEIGATSCAIMSLKSPTL 80
Query: 127 SGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXX 186
SG +W++LS+V +G++ SGSLYGAL+GSI+ +S+AD +GR++ELI+
Sbjct: 81 SGISWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKELILAAFLYLVGAIVTVV 140
Query: 187 XXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG 246
MH AP+YIAET PSQIRG +ISLKE VLG++ GY +G
Sbjct: 141 APVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQIRGRMISLKEFSTVLGMVGGYGIG 200
Query: 247 SFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISAL 306
S I + GWRYMY P ++MG GM A+QG+G+ + ++ AI +L
Sbjct: 201 SLWITVISGWRYMYATILPFPVIMGTGMCWLPASPRWLLLRALQGQGNGENLQQAAIRSL 260
Query: 307 GKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQ 366
+LR D +E Q+ + L L S E E +F E+F+G LKA I GGLVLFQQ
Sbjct: 261 CRLRGSVIADSAAE-QVNEILAEL--SLVGEDKEATFGELFRGKCLKALTIAGGLVLFQQ 317
Query: 367 ITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGG 426
ITGQPSVLYYA ILQ+AGFSAAADATR+S+++G+ KLVMT ++V +D +GRRPLL+ G
Sbjct: 318 ITGQPSVLYYAPSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRPLLLCG 377
Query: 427 VCXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRG 486
V P VAV+ALLLYVGCYQ+SFGPI WLM+SEIFPL+ RGRG
Sbjct: 378 VSGMVISLFLLGSYYMFYKNVPAVAVAALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRG 437
Query: 487 ISLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKGLSLEE 546
ISLAVL NFG+NA+VTFAFSPLKELLGA VPETKGL+LEE
Sbjct: 438 ISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFIYYIVPETKGLTLEE 497
Query: 547 IESKIL 552
IE+K L
Sbjct: 498 IEAKCL 503
|
|
| TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 140/424 (33%), Positives = 201/424 (47%)
Query: 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIXXXXXXXXXXXXXXXXXXX 191
F+LS G VVS L GA LG++ +AD++GRKR LII
Sbjct: 49 FHLSPQMNGFVVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSIS 108
Query: 192 XXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 251
A + APLYI+E P RG L+SL +L + +GI L Y V +
Sbjct: 109 WLVIGRIIVGIAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVV-DYYFA 167
Query: 252 AVGGWRYMYGLSA-PLALLMGIGMXXXXXXXXXXXXXAVQGKGSLQEYKEQAISALGKLR 310
WR M+ P ALL+ +GM + +G ++E+A+ L KLR
Sbjct: 168 RHDAWRSMFAAGVIPAALLL-LGMIVLPYSPRW-----IFSRG----HEEKALWILRKLR 217
Query: 311 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 370
P +E+++E SL+ D ++ F ++ + P L I GL +FQQ+TG
Sbjct: 218 GHGPH---AEQELEHIRASLQQQKGDWRT--LFSKIIR-PTL---FIAIGLAVFQQVTGI 268
Query: 371 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL---IGGV 427
+VLYYA IL+ GF A+ A ++ IG +++T I++ +D LGRRPLL +G +
Sbjct: 269 NTVLYYAPTILKMTGFQASQTAILATMGIGAVLVIITIISLPLIDSLGRRPLLFIGVGAM 328
Query: 428 CXXXXXXXXXXXXXXXXXGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 487
+A +LL+++ + IS GPI WLM SEIFPLR RG G
Sbjct: 329 TVSLLVLSWSFKVHGHMDYMRWIAFGSLLVFISGFSISLGPIMWLMFSEIFPLRVRGLGA 388
Query: 488 SLAVLTNFGSNAIVTFAFSPLKELLGAENXXXXXXXXXXXXXXXXXRTVPETKGLSLEEI 547
S+ TN+ SN +VT F L E LG +VPETKG++LE+I
Sbjct: 389 SIGACTNWASNWLVTITFLTLIEYLGPSGTFFIYFIISVITLIFIYTSVPETKGVTLEQI 448
Query: 548 ESKI 551
E +
Sbjct: 449 EENL 452
|
|
| UNIPROTKB|F1MIV2 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 103/321 (32%), Positives = 146/321 (45%)
Query: 113 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 167
A SG + + +SG T L+ + +VVS L GALL S++ + D GR+
Sbjct: 52 AVSGFLVGYELGIISGALLQIRTLLVLTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRR 111
Query: 168 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 227
+I+ + +YIAE P RG L
Sbjct: 112 AAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLL 171
Query: 228 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 287
+SL EL IV+GIL Y N GW+YM+GL PL +L I M
Sbjct: 172 VSLNELMIVIGILFAYISNYAFANISHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM- 230
Query: 288 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 347
KG ++E A LGKLR +S+ E T++ KSS DE + SF ++F
Sbjct: 231 ----KG----HEEAASKVLGKLRA------ISDTTEELTVI--KSSLKDEY-QYSFWDLF 273
Query: 348 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 405
+ N++ I IG LV F QITGQP++L+YA +L+S GF + A+ S +GV K++
Sbjct: 274 RSKDNMRTRIMIGLMLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 333
Query: 406 MTWIAVAKVDDLGRRPLL-IG 425
T A VD +G + L IG
Sbjct: 334 STIPATLLVDQVGSKTFLCIG 354
|
|
| UNIPROTKB|F1P4J7 SLC2A12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 4.8e-38, Sum P(2) = 4.8e-38
Identities = 99/324 (30%), Positives = 145/324 (44%)
Query: 111 IGATSGATISLQSPELSG-----TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG 165
I A SG + + +SG ++ LS + +VVS L+GAL S+ + D G
Sbjct: 16 IAAVSGLLMGYELGLISGALLQMSSILALSCKEQEIVVSSLLFGALFASLTGGFLIDRFG 75
Query: 166 RKRELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRG 225
R+ +II + +YIAE P RG
Sbjct: 76 RRFAIIIASSLLVMGSLILLPHESYGILIVGRIAIGISISLSSIATCVYIAEIAPQHRRG 135
Query: 226 TLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMXXXXXXXXXX 284
L+SL EL IV+GIL Y + ++ +V GW+YM+GL PL L I M
Sbjct: 136 LLVSLNELMIVIGILFAY-ISNYAFASVSHGWKYMFGLVIPLGALQAIAMYFLPPSPRFL 194
Query: 285 XXXAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL 344
++ E A L +LR D E L +KSS DE + SF+
Sbjct: 195 V---------MKNNDEAARKILERLRET--SDATKE------LTVIKSSLKDEH-QYSFV 236
Query: 345 EVFQGPN-LKA-FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVF 402
++F+ N ++A ++G LV F Q TGQP++L+YA +L+S GF + A+ S +GV
Sbjct: 237 DLFRSKNNMRARMLVGLTLVFFVQTTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVV 296
Query: 403 KLVMTWIAVAKVDDLGRRPLL-IG 425
K+V T A VD +G + L IG
Sbjct: 297 KVVSTVPATVFVDKVGSKTFLCIG 320
|
|
| UNIPROTKB|Q5J316 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 6.7e-38, Sum P(2) = 6.7e-38
Identities = 101/321 (31%), Positives = 143/321 (44%)
Query: 113 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 167
A SG + + +SG T L+ + +VVS L GALL S++ + D GR+
Sbjct: 52 AVSGFLVGYELGIISGALLQIRTLLVLTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRR 111
Query: 168 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 227
+I+ + +YIAE P RG L
Sbjct: 112 AAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLL 171
Query: 228 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 287
+SL EL IV+GIL Y N GW+YM+GL PL +L I M
Sbjct: 172 VSLNELMIVIGILFAYISNYAFANISHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM- 230
Query: 288 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 347
KG ++E A LGKLR + + L +KSS DE + SF ++F
Sbjct: 231 ----KG----HEEAASKVLGKLR--------AVLDTTEELTVIKSSLKDEY-QYSFWDLF 273
Query: 348 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 405
+ N++ I IG LV F QITGQP++L+YA +L+S GF + A+ S +GV K++
Sbjct: 274 RSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 333
Query: 406 MTWIAVAKVDDLGRRPLL-IG 425
T A VD +G + L IG
Sbjct: 334 STIPATLLVDQVGSKTFLCIG 354
|
|
| UNIPROTKB|Q8TD20 SLC2A12 "Solute carrier family 2, facilitated glucose transporter member 12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 101/321 (31%), Positives = 142/321 (44%)
Query: 113 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 167
A SG + + +SG T LS + +VVS + GALL S+ + D GR+
Sbjct: 48 AVSGLLVGYELGIISGALLQIKTLLALSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRR 107
Query: 168 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 227
+I+ + +YIAE P RG L
Sbjct: 108 TAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLL 167
Query: 228 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 287
+SL EL IV+GIL Y N GW+YM+GL PL +L I M
Sbjct: 168 VSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVMK 227
Query: 288 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 347
+G S LG+LR LS+ E T++ KSS DE + SF ++F
Sbjct: 228 GQEGAAS---------KVLGRLRA------LSDTTEELTVI--KSSLKDEY-QYSFWDLF 269
Query: 348 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 405
+ N++ I IG LV F QITGQP++L+YA +L+S GF + A+ S +GV K++
Sbjct: 270 RSKDNMRTRIMIGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 329
Query: 406 MTWIAVAKVDDLGRRPLL-IG 425
T A VD +G + L IG
Sbjct: 330 STIPATLLVDHVGSKTFLCIG 350
|
|
| MGI|MGI:3052471 Slc2a12 "solute carrier family 2 (facilitated glucose transporter), member 12" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 103/321 (32%), Positives = 141/321 (43%)
Query: 113 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 167
A SG + + +SG T L+ + +VVS L GA L S+ + D GR+
Sbjct: 52 AISGLLVGYELGLISGALLQIRTLLALTCHEQEMVVSSLLIGAFLASLTGGVLIDRYGRR 111
Query: 168 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 227
+I+ + +YIAE P RG L
Sbjct: 112 LAIILSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLL 171
Query: 228 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 287
+SL EL IV GIL Y N GW+YM+GL PL +L I M
Sbjct: 172 VSLNELMIVTGILFAYISNYAFANISNGWKYMFGLVIPLGVLQAIAMYFLPPSPRFLVM- 230
Query: 288 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 347
KG QE E A L KLR +S+ E TL+ KSS DE + SF ++F
Sbjct: 231 ----KG--QE--ESAGKVLRKLR------VISDTTEELTLI--KSSLKDEY-QYSFWDLF 273
Query: 348 QGP-NLKA-FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 405
+ N++ +IG LV F Q TGQP++L+YA +L+S GF + A+ S +GV K+V
Sbjct: 274 RSKDNMRTRILIGLTLVFFVQTTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVV 333
Query: 406 MTWIAVAKVDDLGRRPLL-IG 425
T A VD +G + L IG
Sbjct: 334 STIPATLLVDHIGSKTFLCIG 354
|
|
| UNIPROTKB|F1PA43 SLC2A12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 99/321 (30%), Positives = 142/321 (44%)
Query: 113 ATSGATISLQSPELSGT-----TWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 167
A SG + + +SG T L+ + +VVS L GALL S+ + D GR+
Sbjct: 48 AVSGLLVGYELGLISGALLQLRTLLALTCHEQEMVVSSLLIGALLASLTGGVLIDRYGRR 107
Query: 168 RELIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMHGAPLYIAETCPSQIRGTL 227
+I+ + +YIAE P RG L
Sbjct: 108 AAIILSSCLLGLGSLILILSLSYEVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLL 167
Query: 228 ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMXXXXXXXXXXXXX 287
+SL EL IV+GIL Y N GW+YM+GL P +L I M
Sbjct: 168 VSLNELMIVIGILFAYISNYAFANVSHGWKYMFGLVIPFGVLQAIAMYFLPPSPRFLVM- 226
Query: 288 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 347
KG ++E A L +LR +S+ E L +KSS DE + SF ++F
Sbjct: 227 ----KG----HEEAASKVLRRLRA------ISDTTEE--LTGIKSSLKDEY-QYSFWDLF 269
Query: 348 QGP-NLKAFI-IGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLV 405
+ N++ I IG LV F Q+TGQP++L+YA +L+S GF + A+ S +GV K++
Sbjct: 270 RSKDNMRTRIMIGLTLVFFVQVTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVI 329
Query: 406 MTWIAVAKVDDLGRRPLL-IG 425
T A VD +G + L IG
Sbjct: 330 STIPATLLVDHVGSKTFLCIG 350
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WWW9 | XYLL3_ARATH | No assigned EC number | 0.7531 | 0.9909 | 0.9820 | yes | no |
| P0AEP2 | GALP_ECOL6 | No assigned EC number | 0.3256 | 0.8101 | 0.9655 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 553 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-86 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-82 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-72 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-22 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 6e-20 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-20 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-15 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-13 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-13 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 3e-11 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 8e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-10 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 1e-09 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 5e-09 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 2e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-08 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 5e-08 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 9e-08 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 2e-05 | |
| COG0738 | 422 | COG0738, FucP, Fucose permease [Carbohydrate trans | 1e-04 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 7e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 9e-04 | |
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 0.002 | |
| PRK10213 | 394 | PRK10213, nepI, ribonucleoside transporter; Review | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 2e-86
Identities = 163/464 (35%), Positives = 257/464 (55%), Gaps = 33/464 (7%)
Query: 98 LFPALGGLLFGYDIGATSGATISLQSPE-----LSGTTWFNLSAVQLGLVVSGSLYGALL 152
L ALGG LFGYD G GA ++L L+ S V GL+VS G L+
Sbjct: 3 LVAALGGFLFGYDTG-VIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61
Query: 153 GSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LGVLLVGRLLYGLGIGLAMHG 210
GS+ + D GRK+ L+I VL+ +GAL +A G +L+VGR++ GLG+G
Sbjct: 62 GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121
Query: 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF--QINAVGGWRYMYGLSAPLAL 268
P+YI+E P ++RG L SL +L I GIL+ +G + + GWR GL A+
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 269 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 328
L+ IG+ LP SPRWL+L+ E+A + L KL R ++ +D+L
Sbjct: 182 LLLIGLLFLPESPRWLVLKGK---------LEEARAVLAKL-RGVSDVDQEIQEEKDSLE 231
Query: 329 SLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFS 387
+ E + S+LE+F+G ++ ++G L +FQQ+TG ++ YY+ I ++ G S
Sbjct: 232 -----RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS 286
Query: 388 AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF 447
D+ V++++GV V T+IA+ VD GRRPLL+ G G+A+ L+L +
Sbjct: 287 ---DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKS 343
Query: 448 P---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 504
+VA+ +LL++ + + +GP+ W++VSE+FPL R + +++A N+ +N ++ F
Sbjct: 344 KGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFL 403
Query: 505 FSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIE 548
F + +G +FL+FA + L +LF+ VPETKG +LEEI+
Sbjct: 404 FPIITGAIGG-YVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 2e-82
Identities = 162/466 (34%), Positives = 252/466 (54%), Gaps = 31/466 (6%)
Query: 98 LFPALGGLLFGYDIGATSGATISLQSP-ELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 156
L A+GGL+FGYD G GA + + + S+ GLVVS L G +G++
Sbjct: 31 LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90
Query: 157 VYSIADFLGRKRELIIAAVLYALGALTTAYAP---GLGVLLVGRLLYGLGIGLAMHGAPL 213
++D GRK+ L+I A+L+ +GA+ A + +L+VGR+L G+G+G+A P+
Sbjct: 91 AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150
Query: 214 YIAETCPSQIRGTLISLKELFIVLGILLGYFVGS--FQINAVGGWRYMYGLSAPLALLMG 271
Y++E P +RG L SL +L I GIL+ Y GS +N GWR GL A L+
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF 210
Query: 272 IGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLK 331
+G++ LP SPRWL+ +G+ E+A +L +LR G ++++ D L +
Sbjct: 211 LGLFFLPESPRWLVG---KGR------VEEARKSLARLR----GTSGEDKELLDELELID 257
Query: 332 SSYTDEK-----SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGF 386
+ EK S GS + + F+ G L FQQ TG +++YY+ I ++AG
Sbjct: 258 IKRSIEKRSVQPSWGSLFSSTRRIRRRLFL-GVVLQWFQQFTGINAIMYYSPTIFENAGV 316
Query: 387 SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG 446
S A VS+++G T++A+ VD GRRPLL+ G G+A+ L +L
Sbjct: 317 STD-HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT 375
Query: 447 FPL-----VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 501
VA+ +LL++ + + +GP+ W++VSEIFPL R +GIS+AV N+ +N IV
Sbjct: 376 GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIV 435
Query: 502 TFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 547
F F + E +G +F+ F + L ++F+ +PETKG +LEEI
Sbjct: 436 GFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 2e-72
Identities = 156/482 (32%), Positives = 250/482 (51%), Gaps = 56/482 (11%)
Query: 98 LFPALGGLLFGYDIGATSGATISLQSPELSGTTW-FNLSAVQLGLVVSGSLYGALLGSIL 156
L LGGLLFGYD SG SL + ++ + + LG V+ +L G ++G L
Sbjct: 15 LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL 74
Query: 157 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVG-------------RLLYGLG 203
++ GR+ L IAAVL+ + AL +A+ P G +G R++ G+G
Sbjct: 75 GGYCSNRFGRRDSLKIAAVLFFISALGSAW-PEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133
Query: 204 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GW 256
+GLA +P+YIAE P+ IRG L+S + I+ G L+ YFV F + GW
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193
Query: 257 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGD 316
RYM+ A ALL + ++ +P +PR+L+ R Q EQA L K+ G+
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ---------EQAEGILRKIM----GN 240
Query: 317 KLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 376
L+ + +++ +K S + G L +F + +IG L +FQQ G VLYY
Sbjct: 241 TLATQALQE----IKHSLDHGRKTGGKLLMF---GVGVIVIGVMLSVFQQFVGINVVLYY 293
Query: 377 AGPILQSAGFSAAADATRV-SVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 435
A I ++ G A+ D + ++++GV L T +A+ VD GR+PL I G G+A+ +
Sbjct: 294 APEIFKTLG--ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 351
Query: 436 LLS--AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 493
L Y + G +VA+ ++L YV + +S+GP+ W+++SEIFP RG+ +++AV
Sbjct: 352 SLGTAFYTQAPG---IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 408
Query: 494 NFGSNAIVTFAFSPLKELLGAENIF------LLFAAIAFLAVLFIVRTVPETKGLSLEEI 547
+ +N V++ F + + F ++ + LA LF+ + VPETKG +LEE+
Sbjct: 409 QWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM 468
Query: 548 ES 549
E+
Sbjct: 469 EA 470
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 119/473 (25%), Positives = 199/473 (42%), Gaps = 79/473 (16%)
Query: 105 LLFGYDIGATSGATISLQSPELSGTTW------------FNL---SAVQLGLVVSGSLYG 149
L G + S ++ P L G + ++L A ++ L S G
Sbjct: 80 SLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVG 139
Query: 150 ALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGI-GLAM 208
LLGS + ++D GRK+ L+++ ++ A+ + TA++P V LV RLL G+GI G+ +
Sbjct: 140 VLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWV 199
Query: 209 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 268
L E P + R + +L ++F LG++L V F + WR++ +
Sbjct: 200 QAVVLN-TEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF----IPDWRWLQLAVSLPTF 254
Query: 269 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 328
L + W +P SPRWL+ QG+ E+A+ L ++ + G KL E +
Sbjct: 255 LFFLLSWFVPESPRWLIS---QGRI------EEALKILQRIAKI-NGKKLP---AEVLSL 301
Query: 329 SLKSSYTDEKSEGSFLEVFQGPNLKA---------FIIG---GGLVLFQQITGQPSVLYY 376
SL+ + K + SFL++F+ PNL+ F GLVL G
Sbjct: 302 SLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG------- 354
Query: 377 AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLL 436
G I S + + +T + +D LGRR + + ++LLL
Sbjct: 355 -GNIYLDLFISGLVE------LPAKL---ITLLL---IDRLGRRYTMAASLLLAGVALLL 401
Query: 437 LSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNF 495
L + + + +L +F + +L +E++P R G+ + +
Sbjct: 402 L---LFVPVDLYFLRTALAVLGKFGITSAFQMV-YLYTAELYPTVVRNLGVGVCSTMARV 457
Query: 496 GSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV--PETKGLSLEE 546
GS SP LG + +FL LA+L + T+ PETKG+ L E
Sbjct: 458 GS------IISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 6e-20
Identities = 95/409 (23%), Positives = 155/409 (37%), Gaps = 49/409 (11%)
Query: 91 SSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGA 150
+ L L+ GYD+ A + +P +S + L VQLG + S L G
Sbjct: 13 RYQWRAIILSFLIMLMDGYDL-----AAMGFAAPAISAE--WGLDPVQLGFLFSAGLIGM 65
Query: 151 LLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210
G++ +AD +GR+R L+ + +L+++ L A A + LL+ R L GLG+G M
Sbjct: 66 AFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPN 125
Query: 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY--GLSAPLAL 268
++E P + RGT + L +G +G F+ + I V GWR ++ G APL L
Sbjct: 126 LNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI-PVFGWRSLFYVGGIAPLLL 184
Query: 269 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 328
L+ + + LP S +L+ + + + + A + L E
Sbjct: 185 LLLLMRF-LPESIDFLVSK--RPETVRRIVNAIAPQM-----QAEAQSALPE-------- 228
Query: 329 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSA 388
T F +FQG + ++ L + +Y+ L
Sbjct: 229 ---QKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLTNWLPKLMVEL 280
Query: 389 AADATRVSVVIGVFKLVM---TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG 445
+ + +F + I D LG R LLLL A + +L
Sbjct: 281 GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT---------ALLLLLGAVFAVLV 331
Query: 446 GFPLVAVSALLLYVGCYQI-SFGPISWLMVS--EIFPLRTRGRGISLAV 491
G L + + LLL G S L +P R G+ A+
Sbjct: 332 GSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAI 380
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 7e-20
Identities = 70/190 (36%), Positives = 93/190 (48%), Gaps = 8/190 (4%)
Query: 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSIL 156
L LG L G D G S A L LSA Q GL+VS G LGS+L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLA-------EDLGLSASQAGLIVSAFSLGYALGSLL 53
Query: 157 VYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 216
++D GR+R L++ +L+ALG+L A+A L +LLVGR L GLG G A IA
Sbjct: 54 AGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIA 113
Query: 217 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 276
E P + RG + L LG LLG +G + GWR+++ + A L LL+ + +
Sbjct: 114 EWFPPKERGRALGLFSAGFGLGALLGPLLGGL-LAESLGWRWLFLILAILGLLLALLLLF 172
Query: 277 LPPSPRWLLL 286
L L L
Sbjct: 173 LLRLLLLLAL 182
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 80/369 (21%), Positives = 133/369 (36%), Gaps = 51/369 (13%)
Query: 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 191
+S ++GL+++ G L L ++D GR+R L+I +L+ALG L +A L
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW 86
Query: 192 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 251
+LLV R+L GLG G A IA+ P + RG + L LG LG +G +
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL-LA 145
Query: 252 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRR 311
++ GWR + + A LALL + L
Sbjct: 146 SLFGWRAAFLILAILALLAAV--------------------------------LAALLLP 173
Query: 312 RPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 371
RPP + + E+ L ++ + + L
Sbjct: 174 RPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL--------------ALLLFGFAFF 219
Query: 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 431
++L Y + G SA + + + + + D LGRR L+ + +
Sbjct: 220 ALLTYLPLYQEVLGLSALLAGLLLGLAGLLG-AIGRLLLGRLSDRLGRRRRLLLALLLLI 278
Query: 432 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 491
L+ L L+ + + + LL +G P +VS++ P RG L
Sbjct: 279 LAALGLAL---LSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYN 335
Query: 492 LTNFGSNAI 500
A+
Sbjct: 336 TAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 10/158 (6%)
Query: 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 191
F L Q+G S + G L G++L +AD +GRKR LI++ L+ L +L TA A
Sbjct: 45 FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP 104
Query: 192 VLLVGRLLYGLGIGLAMHGAPLYIA---ETCPSQIRGTLISLKELFIVLGILLGYFVGSF 248
LLV RLL G+G+G A+ P IA E ++RGT +SL + G L +G
Sbjct: 105 SLLVARLLTGVGLGGAL---PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL 161
Query: 249 QINAVGGWRYMY--GLSAPLALLMGIGMWSLPPSPRWL 284
WR+++ G PL L+ + W LP S +
Sbjct: 162 AAGD-AAWRHIFYVGGVGPLLLVPLLMRW-LPESRAFA 197
|
Length = 406 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 96/396 (24%), Positives = 150/396 (37%), Gaps = 71/396 (17%)
Query: 152 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLG 203
LG+I+ D +GRK+ L+I ++ +G L P +LL+ RL+ G
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 204 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GW 256
+G GA LY+AE P RG S +++ +G+LL +G GW
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169
Query: 257 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGD 316
R + +SA L L IG++ LRR
Sbjct: 170 RIPFLVSAVLVL---IGLY---------------------------------LRRN---- 189
Query: 317 KLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 376
+E+T V K+ +K G E + K F++G GLV+ T Y
Sbjct: 190 ------LEETPVFEKAQEKHKKKRGPIAETLTK-HRKPFLLGLGLVIATTTTFYLITTYL 242
Query: 377 AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP-LLIGGVCGIALSLL 435
+ Q+ G SA A V ++ + + ++ A D +GRRP L+I V L++
Sbjct: 243 PTYLTQTLGLSAN-SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP 301
Query: 436 LLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL----AV 491
LL A + G + +L + GP+ + E+FP R G SL A
Sbjct: 302 LLMAL--LDSGSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLAYNLAG 358
Query: 492 LTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFL 527
G + A + A +L A+ L
Sbjct: 359 AIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIGL 394
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 3e-11
Identities = 93/407 (22%), Positives = 156/407 (38%), Gaps = 71/407 (17%)
Query: 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 191
+S G +++ G LG+ L+ + L R+R L+ L+ + L +A AP
Sbjct: 43 LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFA 102
Query: 192 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 251
VLL+ R L GL G+ A A P RG ++L + L +LG +G+F +
Sbjct: 103 VLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF-LG 161
Query: 252 AVGGWRYMYGLSAPLALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLR 310
+ GWR + A LALL + +W LPPS + + L +L
Sbjct: 162 QLFGWRATFLAIAVLALLALLLLWKLLPPS-------------EISGSLPGPLRTLLRLL 208
Query: 311 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 370
RRP + + G L+
Sbjct: 209 RRP---------------GVLLGLL----------------ATFLFMTGHFALYT----- 232
Query: 371 PSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 429
Y P L+S AGFS +A + V + G+ + + ++ D G R LI +
Sbjct: 233 -----YIRPFLESVAGFSVSA-VSLVLLAFGIAGFIGNLL-GGRLADRGPRRALIAALLL 285
Query: 430 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 489
+AL+LL L+ G P +A++ L L + +F P + + + L ++
Sbjct: 286 LALALLALT----FTGASPALALALLFL----WGFAFSPALQGLQTRLARLAPDAADLAG 337
Query: 490 AVLT---NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV 533
++ N G A+ + + LG + AA+ LA+L +
Sbjct: 338 SLNVAAFNLG-IALGAALGGLVLDALGYAATGWVGAALLLLALLLAL 383
|
Length = 394 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 8e-11
Identities = 108/464 (23%), Positives = 168/464 (36%), Gaps = 79/464 (17%)
Query: 140 GLVVSGSLYGALLGSILVYSIADFLGRKR----ELIIAAVLYALGALTTAYAPG--LGVL 193
V + G L G + +AD LGRKR ELII + L+ +P + L
Sbjct: 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATL 118
Query: 194 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV-------- 245
R G+GIG + + +E + RG +++ GIL G V
Sbjct: 119 CFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGF 178
Query: 246 --------------GSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL---RA 288
GS WR + G A ALL ++P +PR+
Sbjct: 179 KHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDV 238
Query: 289 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 348
Q + + I A D++ E+ V S F F+
Sbjct: 239 EQAASDMSAVLQVKIEA--------EPDEV-EKASTAVEVPKASWS------DFFTHFFK 283
Query: 349 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADAT---RVSVVIGVFKLV 405
+ K ++G F V IL + G+S A V L+
Sbjct: 284 WRHGKH-LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLI 342
Query: 406 MT--------WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLL 457
+ W+ V VD +GR+P+ + G + + +L Y L +A+ L
Sbjct: 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQ 402
Query: 458 YVGCYQISFGP--ISWLMVSEIFPLRTRG--RGISLAVLTNFGSNAIVTFAFSPLKE--- 510
+ +FGP ++++ E+FP R R GIS A G+ I F F L +
Sbjct: 403 FFA----NFGPNATTFIVPGEVFPTRYRSTAHGIS-AASGKAGA-IIGQFGFLYLAQHGD 456
Query: 511 -------LLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 547
+ ++ +FA FL +LF + +PETKG SLEE+
Sbjct: 457 PTKGYPTGIWMGHVLEIFALFMFLGILFTL-LIPETKGKSLEEL 499
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 5/179 (2%)
Query: 356 IIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD 415
++ L F G +L Y LQ +AA+A + + G+ ++ + D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 416 DLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVS 475
LGRR LL+ +A LLL A L + + + P + S
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF-----PALLTLAS 291
Query: 476 EIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 534
E+ P RG L A+ L + G +FL+ AA+A LA L ++
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 11/182 (6%)
Query: 107 FGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR 166
G+ + A ++L E++G F L+ V ++S +L G+++ D GR
Sbjct: 19 LGWLLDAFDFFLVALVLAEVAGE--FGLTTVDAASLISAALISRWFGALMFGLWGDRYGR 76
Query: 167 KRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT 226
+ ++ + VL++ G L +APG + + RL+ G+G+G + Y+ E+ P +R
Sbjct: 77 RLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNK 136
Query: 227 LISLKELFIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGMWSLPPSP 281
++ G +G V + + V GWR ++ +S + ++P +
Sbjct: 137 ASG----LLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192
Query: 282 RW 283
W
Sbjct: 193 DW 194
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-09
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Query: 140 GLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 199
GL+++G G L+ S L + D GRK L++ ++ L A + + VL++ R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 200 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259
G G A+ IA+ P + RG + L I LG LLG +G + GWR
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGV-LAQFLGWRAP 119
Query: 260 YGLSAPLALLMGIGMWSLPP 279
+ A LAL I + L P
Sbjct: 120 FLFLAILALAAFILLAFLLP 139
|
Length = 141 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 16/163 (9%)
Query: 102 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIA 161
LG LL G+D I+L E+ G F L+ VQ ++S + G +L+ ++
Sbjct: 27 LGYLLDGFDF-----VLITLVLTEVQGE--FGLTTVQAASLISAAFISRWFGGLLLGAMG 79
Query: 162 DFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPS 221
D GR+ ++I+ VL+++G L +APG L + RL+ G+G+ + Y+ E+ P
Sbjct: 80 DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPK 139
Query: 222 QIR----GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 260
+R G LIS +G ++ V S + V GWR ++
Sbjct: 140 HLRNKASGFLIS----GFSIGAVVAAQVYSL-VVPVWGWRALF 177
|
Length = 496 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 3/187 (1%)
Query: 93 VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALL 152
++L FL L L + + + + P LSA + GL++S G +L
Sbjct: 168 LLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-LGLSAAEAGLLLSLFGLGGIL 226
Query: 153 GSILVYSIADFLGRKRE-LIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211
G++L ++D LGR+R L+I +L ALG L A AP L +LLV LL G G+G A
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286
Query: 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 271
+E P + RGT L F LG LG + + GG+ ++ + A LALL
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL-LLDTGGYGGVFLILAALALLAA 345
Query: 272 IGMWSLP 278
+ + LP
Sbjct: 346 LLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 191
LSA Q G V S +G ++G + D G ++ L + V++ + A+A
Sbjct: 24 LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83
Query: 192 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG-ILLGYFVGSFQI 250
L + R+L G G L +A P+ R T +S+ LG I+ G VG I
Sbjct: 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI 143
Query: 251 NAVGGWRYMYGLSAPLALLMGI 272
+ W++ + + L ++ G+
Sbjct: 144 HF--SWQWAFIIEGVLGIIWGV 163
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 9e-08
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 127 SGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY 186
SG V LG++V +G L AD LGRK+ L+I + A +++
Sbjct: 202 SGKGMLG-LIVYLGMMVGAFFWGGL---------ADKLGRKQCLLICLSVNGFFAFFSSF 251
Query: 187 APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG-------- 238
G G L RLL G GIG A+ Y AE + RG +S +F ++G
Sbjct: 252 VQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311
Query: 239 -ILLGYFVGSFQINAV---GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL 285
++ ++ SFQ+ + WR + A + + +P SPR+ L
Sbjct: 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL 362
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 108/426 (25%), Positives = 168/426 (39%), Gaps = 104/426 (24%)
Query: 152 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV--------LLVGRLLYGLG 203
+G L IAD GRK+ ++I+ + G+L A PG LL+ RL GL
Sbjct: 78 IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS 137
Query: 204 IGLAMHGAPLYIAETCPSQIRG--------TLISLKELFIVLGILLGYFVGSFQINAVGG 255
+G + Y++E +G TLI + L +++ ++L + ++ G
Sbjct: 138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELRE-WG 196
Query: 256 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPG 315
WR + L A LA++ L LR L E +Q AL
Sbjct: 197 WRIPFALGAVLAVVA-------------LWLRR-----QLDETSQQETRAL--------- 229
Query: 316 DKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII------GGGLVLFQQITG 369
K GS +++ N +AFI+ G L + T
Sbjct: 230 ----------------------KEAGSLKGLWR--NRRAFIMVLGFTAAGSLCFYTFTT- 264
Query: 370 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR-PLLIGGVC 428
Y ++ +AG A + ++ + VF L+ I A D +GRR +L G
Sbjct: 265 -----YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG-ALSDKIGRRTSMLCFGSL 318
Query: 429 GIALSLLLLSAYYKI---LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP--LRTR 483
++ +LSA + F LV + LL V Y IS ++ +E+FP +R
Sbjct: 319 AALFTVPILSALQNVSSPYAAFGLVMCA--LLIVSFYT----SISGILKAEMFPAQVRAL 372
Query: 484 GRGISLAVLTN-FGSNAIVTFAFSPLKELLGAENIFL----LFAAIAFLAVLFIVRTVPE 538
G G+S AV FG +A + LK +G E F L A +AFL L + R +
Sbjct: 373 GVGLSYAVANALFGGSA--EYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLMLHR---K 426
Query: 539 TKGLSL 544
KG+ L
Sbjct: 427 GKGMRL 432
|
Length = 432 |
| >gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL- 190
F+L+ + L+ G + S+ + LG K +++ +LYA+GA A
Sbjct: 43 FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102
Query: 191 --GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 248
G LV + GIGL A Y+ + ++L + F LG +LG +GS
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSS 162
Query: 249 QI 250
I
Sbjct: 163 LI 164
|
Length = 422 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 17/122 (13%)
Query: 152 LGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG---LGVL-----LVGRLLYGLG 203
LG+I++ + D +GR++ LI+ + A G L A+ PG +G+ L+GRLL G
Sbjct: 71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFS 130
Query: 204 IGLAMHGAPLYIAETCPSQIRGTLISL----KELFIVLGILLGYFVGSF----QINAVGG 255
G+ + G +Y+AE +G S +++ +V LLGY + + Q+ G
Sbjct: 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAE-WG 189
Query: 256 WR 257
WR
Sbjct: 190 WR 191
|
Length = 434 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 9e-04
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 4/180 (2%)
Query: 134 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 193
L+ ++ + + + G G L +AD GRK ++ + V Y++G + A G+ +L
Sbjct: 50 LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109
Query: 194 LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLIS-LKELFIVLGILLGYFVGSFQINA 252
+ R + G+G+ A Y E+ P ++ + L F + I+ YF+ SF
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA--E 167
Query: 253 VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR-AVQGKGSLQEYKEQAISALGKLRR 311
GWR + + LL+ P S W + + +GK S + ++S G R
Sbjct: 168 AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNR 227
|
Length = 426 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 191
F S GL++S YG ++ I V +A K + I L ++ ++ +A G G
Sbjct: 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130
Query: 192 VLLV--GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 249
+ LV R++ GL G I + P + R L+ + G LG F+
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM----STSGFQLGTFI---- 182
Query: 250 INAVGGWRYMYGLSAP 265
+ GW P
Sbjct: 183 FLPISGWLCESWGGWP 198
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
Query: 140 GLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLL 199
G V+ + + A+ S+ + R+ +I+ AVL L L ++A +LL+GR
Sbjct: 58 GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117
Query: 200 YGLGIG--------LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 251
GL +G L M P S I G + + +V+ LG F+G
Sbjct: 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAV----SIALVIAAPLGSFLG----- 168
Query: 252 AVGGWRYMYGLSAPLALLMGIGMW-SLPPSP 281
+ GWR ++ +A + +L + SLP P
Sbjct: 169 ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 100.0 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 100.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 100.0 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 100.0 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.98 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.98 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.98 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.98 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.97 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.97 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.96 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.96 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.94 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.92 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.9 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.89 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.88 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.87 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.87 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.86 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.85 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.85 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.84 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.83 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.82 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.79 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.78 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.71 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.7 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.67 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.63 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.57 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.55 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.53 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.53 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.51 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.51 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.5 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.5 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.49 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.48 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.48 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.48 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.47 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.47 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.47 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.46 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.45 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.45 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.45 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.44 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.44 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.44 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.43 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.43 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.43 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.43 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.42 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.42 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.42 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.41 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.4 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.4 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.4 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.4 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.4 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.4 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.4 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.4 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.39 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.39 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.38 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.38 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.37 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.37 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.36 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.35 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.34 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.34 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.34 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.34 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.33 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.33 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.33 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.33 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.32 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.31 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.3 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.3 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.29 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.29 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.29 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.29 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.28 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.28 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.27 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.26 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.25 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.25 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.24 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.24 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.23 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.23 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.22 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.21 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.21 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.19 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.19 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.18 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.18 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.16 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.15 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.14 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.13 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.12 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.12 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.11 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.11 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.11 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.11 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.1 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.09 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.09 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.08 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.07 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.06 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 99.06 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.06 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.04 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.03 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.03 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.02 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.01 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.0 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.0 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.96 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.95 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.94 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.93 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.86 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.86 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.84 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.84 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.82 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.82 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.8 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.78 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.72 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.69 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.67 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.67 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.67 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.63 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.62 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.61 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.55 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.53 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.5 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.48 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.47 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.43 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.41 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.41 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.39 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.38 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.33 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.32 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.29 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.19 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.17 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.15 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.96 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.91 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.82 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.78 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.71 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.69 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.62 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.5 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.37 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.33 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.32 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.31 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.09 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.99 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.69 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.68 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.66 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.64 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.62 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.48 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.05 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.04 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.7 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 95.58 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.07 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 93.99 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.51 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.45 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 92.42 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 91.89 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 90.22 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 89.62 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 88.59 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 88.38 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 88.0 | |
| PF02535 | 317 | Zip: ZIP Zinc transporter; InterPro: IPR003689 The | 86.2 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 85.5 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 81.1 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 81.01 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.0 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=341.88 Aligned_cols=447 Identities=31% Similarity=0.543 Sum_probs=373.5
Q ss_pred hhhHHHHHHHHHHHHhhhchhhhccccccccCC---CCCCCccccc--Cch----hHHHHHHHHHHHHHHHHHHHHHHhh
Q 008804 91 SSVILPFLFPALGGLLFGYDIGATSGATISLQS---PELSGTTWFN--LSA----VQLGLVVSGSLYGALLGSILVYSIA 161 (553)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~s~----~~~g~~~s~~~~~~~i~~~~~G~l~ 161 (553)
++..+..+..+++.+-+||+.+.+++....+.+ +...+. ++ .++ ...+.+.+++.+|.++|+++.|+++
T Consensus 7 ~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r--~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la 84 (485)
T KOG0569|consen 7 RRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIER--YGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA 84 (485)
T ss_pred HHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777779999999999887655442 111111 23 333 3468889999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHH
Q 008804 162 DFLGRKRELIIAAVLYALGALTTAY---APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 238 (553)
Q Consensus 162 dr~Grk~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG 238 (553)
||+|||..+.++.++..++.++..+ .+++.+++++|++.|+..|......+.++.|..|++.||....+.+.+..+|
T Consensus 85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 9999999999998888887777665 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc-ccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCc
Q 008804 239 ILLGYFVGSF-QINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDK 317 (553)
Q Consensus 239 ~~~g~~l~~~-l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (553)
..++..++.- +......|++.+.+..+++++..+...++||||+|+..+ +++.++|++.++++++..+.++
T Consensus 165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~--------k~~~~~A~~sl~~y~G~~~~~~ 236 (485)
T KOG0569|consen 165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIK--------KGDEEEARKALKFYRGKEDVEA 236 (485)
T ss_pred HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH--------cCCHHHHHHHHHHHhCCCcchh
Confidence 9999776543 333443799999999999999999999999999999985 6789999999999999876655
Q ss_pred hhHHHHHHHHHHhhhccccccccccceecccccchh-HHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHH
Q 008804 318 LSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLK-AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVS 396 (553)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (553)
..+.+.++..++ +..+.+..+++++++++..| ...+...+....++.+.+.+.+|...++.+.|.+. ..+.+..
T Consensus 237 ~~e~~~~e~~~~----~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~-~~a~~an 311 (485)
T KOG0569|consen 237 EIEEMLREIEEE----ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTP-EEAQYAN 311 (485)
T ss_pred HHHHHHHHHHHh----ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCH-HHHHHHH
Confidence 444443333222 22334667889999998776 45666778888999999999999999999999988 8899999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCc-h---HHHHHHHHHHHHHHhcCcccchhh
Q 008804 397 VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF-P---LVAVSALLLYVGCYQISFGPISWL 472 (553)
Q Consensus 397 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~ 472 (553)
...++..++.++++.++.||.|||++++.+..++.+..+++.......+.. . +..+...+++...+..+.+|+.+.
T Consensus 312 ~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~f 391 (485)
T KOG0569|consen 312 LGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWF 391 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence 999999999999999999999999999999999888888777655433222 2 234566677788888999999999
Q ss_pred hhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHhhhh
Q 008804 473 MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKIL 552 (553)
Q Consensus 473 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (553)
+.+|++|++.|+.++++..+++++..++....+.++.+.+|. ..|+++.+.+++..+..++.+||||+|+.+|+.++++
T Consensus 392 i~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 392 IGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 8888899999999999999999999999999887766
Q ss_pred C
Q 008804 553 K 553 (553)
Q Consensus 553 ~ 553 (553)
|
T Consensus 471 ~ 471 (485)
T KOG0569|consen 471 K 471 (485)
T ss_pred h
Confidence 4
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=360.37 Aligned_cols=426 Identities=19% Similarity=0.214 Sum_probs=320.7
Q ss_pred hHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 008804 93 VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII 172 (553)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~ 172 (553)
.+.++++++++.+..+++...++..+|.+..+ ++++..+.+++.+++.++++++++++|+++||+|||+++++
T Consensus 165 ~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~-------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii 237 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEVFVVGFVLPSAEKD-------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 44455667778888899998888888887766 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCC
Q 008804 173 AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA 252 (553)
Q Consensus 173 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~ 252 (553)
++++.++++++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.++++.+++.+|.++++.++..+...
T Consensus 238 ~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~ 317 (742)
T TIGR01299 238 CLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH 317 (742)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877655432
Q ss_pred C------------CchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCc-hh
Q 008804 253 V------------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDK-LS 319 (553)
Q Consensus 253 ~------------~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 319 (553)
. .+||+.+++.++++++.+++.+++||+|+|+.. +++.+++.+.+++++..+.... .+
T Consensus 318 ~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~---------~gr~~eA~~iL~~i~~~n~~~~~~~ 388 (742)
T TIGR01299 318 YGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLE---------NGKHDEAWMILKLIHDTNMRAKGHP 388 (742)
T ss_pred ccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH---------CCCHHHHHHHHHHHhcCCCCCcCch
Confidence 1 279999999999888888888899999999986 4567888888888876554321 11
Q ss_pred HHH--HHHHHHHhhhc-----ccccc----------------ccccceecccccchhHHHHHHHHHHHHHhhChhhHHHh
Q 008804 320 ERQ--IEDTLVSLKSS-----YTDEK----------------SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYY 376 (553)
Q Consensus 320 ~~~--~~~~~~~~~~~-----~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (553)
... ........... ..... ...+++++++.+ +++..+...+.++.....++.+..|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~~yygl~~w 467 (742)
T TIGR01299 389 EKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSFGYYGLSVW 467 (742)
T ss_pred hHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 10000000000 00000 001344556554 4444555556667777778889999
Q ss_pred HHHHHHHc------------------------------------------CC-------C-------------C------
Q 008804 377 AGPILQSA------------------------------------------GF-------S-------------A------ 388 (553)
Q Consensus 377 ~~~~~~~~------------------------------------------~~-------~-------------~------ 388 (553)
+|.++.+. |+ . .
T Consensus 468 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (742)
T TIGR01299 468 FPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFK 547 (742)
T ss_pred HHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhh
Confidence 99876441 00 0 0
Q ss_pred ----------------------------------------------chhhHHHHHHHHHHHHHHHHHHHHhhcccCCchh
Q 008804 389 ----------------------------------------------AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 422 (553)
Q Consensus 389 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 422 (553)
.........+..++.+++.+++++++||+|||++
T Consensus 548 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~ 627 (742)
T TIGR01299 548 NCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRM 627 (742)
T ss_pred ccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 0012344556678889999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHH
Q 008804 423 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 502 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 502 (553)
+.++.++.+++++++.+. ......++..+ +.+++..+..+..+.+++|.+|++.|++++|+.++...+|++++|
T Consensus 628 l~~~~~lsai~~ll~~~~-----~s~~~ll~~~~-l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp 701 (742)
T TIGR01299 628 LAGSMVLSCISCFFLSFG-----NSESAMIALLC-LFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGI 701 (742)
T ss_pred HHHHHHHHHHHHHHHHHH-----ccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888877766542 12222233233 333333344556778999999999999999999999999999999
Q ss_pred HHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008804 503 FAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLS 543 (553)
Q Consensus 503 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (553)
++.+.+.+. +...+|++.+++.++++++.+ ++||++++.
T Consensus 702 ~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 702 LIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred HHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 999988774 456777777777777666544 569988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=345.91 Aligned_cols=441 Identities=23% Similarity=0.296 Sum_probs=312.3
Q ss_pred cchhhhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 008804 88 FSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK 167 (553)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk 167 (553)
..+.+. .+.++++++.+.++|+...++...+.+..+....+ .+.++.+.+++.+.+.+++.++.+++|+++||+|||
T Consensus 10 ~~~~~~-~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr 86 (502)
T TIGR00887 10 FGWQHF-RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGK--GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRK 86 (502)
T ss_pred cCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 344433 34566778889999999999888887654321122 456777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHH
Q 008804 168 RELIIAAVLYALGALTTAYAPG------LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 241 (553)
Q Consensus 168 ~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 241 (553)
+++.++.+++.++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|.++
T Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~ 166 (502)
T TIGR00887 87 RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILA 166 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998776 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccC----------------------CCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhH
Q 008804 242 GYFVGSFQIN----------------------AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYK 299 (553)
Q Consensus 242 g~~l~~~l~~----------------------~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~ 299 (553)
++.++..+.. ...+||++|.+.++++++..+..+++||||+|+..+++ +.
T Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~--------~~ 238 (502)
T TIGR00887 167 GAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAK--------DV 238 (502)
T ss_pred HHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCc--------ch
Confidence 9988765431 01279999999999888888888899999999986421 11
Q ss_pred HHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceeccccc---chhHHHHHHHHHHHHHhhChhhHHHh
Q 008804 300 EQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP---NLKAFIIGGGLVLFQQITGQPSVLYY 376 (553)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (553)
+++.+.+.+....+..+... +.++. +++ ++..+.+++++++++ +.++..+.....++.....++....|
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~--~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 310 (502)
T TIGR00887 239 EQAASDMSAVLQVKIEAEPD--EVEKA----STA--VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLN 310 (502)
T ss_pred HHHHHHHHHHhccccccCcc--cccch----hcc--ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 23444444443322111110 00000 000 011123466776542 22223333223333333333456667
Q ss_pred HHHHHHHcCCCCchh-----------hHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhc
Q 008804 377 AGPILQSAGFSAAAD-----------ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG 445 (553)
Q Consensus 377 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (553)
.|.++++.|++.... .........++.+++.++.++++||+|||+.+..+..+.++++.++......
T Consensus 311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~-- 388 (502)
T TIGR00887 311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH-- 388 (502)
T ss_pred cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh--
Confidence 888888888764211 0112334445667788999999999999999988887777766655543211
Q ss_pred CchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh----------hCch
Q 008804 446 GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL----------LGAE 515 (553)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~ 515 (553)
..........++...++..+..+..+.+..|.+|++.|+++.|+.+.++.++++++|.+.+.+.+. .++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 468 (502)
T TIGR00887 389 LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMG 468 (502)
T ss_pred cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccch
Confidence 011111222222233344555667778899999999999999999999999999999999999884 3445
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHhh
Q 008804 516 NIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESK 550 (553)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (553)
..|++++++++++.++ ++++||++++++||+++|
T Consensus 469 ~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 469 HVLEIFALFMFLGILF-TLLIPETKGKSLEELSGE 502 (502)
T ss_pred HHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhCC
Confidence 6778888877777664 467799999999887764
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=332.92 Aligned_cols=434 Identities=34% Similarity=0.568 Sum_probs=317.7
Q ss_pred HHHHHHHHHHHHhhhchhhhccccccccCCCC---CCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 008804 94 ILPFLFPALGGLLFGYDIGATSGATISLQSPE---LSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL 170 (553)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~ 170 (553)
..+.++++++.+..+|+...+++..+.+.++. ...+ ++.+..+.+++.+++.++..++++++|+++||+|||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~ 88 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLS--ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHhHHHHHHHhccccccc--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33455566788999999999998887766542 1222 588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHH
Q 008804 171 IIAAVLYALGALTTAYA------------PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLG 238 (553)
Q Consensus 171 ~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG 238 (553)
+++.++++++.++++++ +.++.++++|+++|++.|...+...+++.|++|+++|++++++.+.+..+|
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G 168 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG 168 (479)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence 99999999999888763 235778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccc--------CCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHh
Q 008804 239 ILLGYFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLR 310 (553)
Q Consensus 239 ~~~g~~l~~~l~--------~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (553)
.++++.+++.+. +.. +||+.|++.+++.++..+..+++||+|+|+..+ ++.+++++..++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~---------~~~~~~~~~~~~~~ 238 (479)
T PRK10077 169 QLVVYFVNYFIARSGDASWLNTD-GWRYMFASEAIPALLFLMLLYFVPETPRYLMSR---------GKQEQAEGILRKIM 238 (479)
T ss_pred HHHHHHHHHHHhccCcccccccC-ChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHc---------CCHHHHHHHHHHHc
Confidence 999988766543 234 899999999888888777778899999886542 23334444444433
Q ss_pred cCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCch
Q 008804 311 RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAA 390 (553)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (553)
...+. ....++......++ ... .+..+. ..............+....+++...++.|.+.++.|.+. .
T Consensus 239 ~~~~~----~~~~~~~~~~~~~~---~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~-~ 306 (479)
T PRK10077 239 GNTLA----TQALQEIKHSLDHG---RKT---GGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST-D 306 (479)
T ss_pred CChhH----HHHHHHHHHHHHHh---hhh---hhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCC-c
Confidence 22110 11111111110000 000 011111 111122222233344455555667788899988888776 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccch
Q 008804 391 DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPIS 470 (553)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (553)
.........++..+++.++.++++||+|||+.+..+.++.+++.+.+...... ...........+++.+++.....|..
T Consensus 307 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (479)
T PRK10077 307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAAFAMSWGPVC 385 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhccccchh
Confidence 56677777888999999999999999999999999988888877766543221 11122233333344444444555777
Q ss_pred hhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhH------HhhCchhHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 008804 471 WLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK------ELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSL 544 (553)
Q Consensus 471 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (553)
+.++.|.+|++.|+++.|+.+....++.++++.+.+.+. +..++...|+++++++++++++.+++.+|+|+++.
T Consensus 386 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 465 (479)
T PRK10077 386 WVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 465 (479)
T ss_pred HHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCH
Confidence 899999999999999999999999999999887776544 56778888888888888888777778899999999
Q ss_pred HHHHhhhh
Q 008804 545 EEIESKIL 552 (553)
Q Consensus 545 ~~~~~~~~ 552 (553)
+|.+++.+
T Consensus 466 ~~~~~~~~ 473 (479)
T PRK10077 466 EEMEALWE 473 (479)
T ss_pred HHHHHHHh
Confidence 88877755
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=334.32 Aligned_cols=436 Identities=36% Similarity=0.627 Sum_probs=322.1
Q ss_pred hhhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccC--------chhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008804 91 SSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNL--------SAVQLGLVVSGSLYGALLGSILVYSIAD 162 (553)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~s~~~~~~~i~~~~~G~l~d 162 (553)
++.+...+++.++.++.+++...+....+.+..+ ++. +..+.+++.+++.++..++++++|+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 96 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFE-------FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSD 96 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHH-------HhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 3344445566677788888888888877776655 444 4899999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHH
Q 008804 163 FLGRKRELIIAAVLYALGALTTAYA---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGI 239 (553)
Q Consensus 163 r~Grk~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 239 (553)
|+|||++++++.++++++.+++.+. .+++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.
T Consensus 97 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 176 (481)
T TIGR00879 97 RFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI 176 (481)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999998554 4566899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh---hcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCC
Q 008804 240 LLGYFVG---SFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGD 316 (553)
Q Consensus 240 ~~g~~l~---~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (553)
.+++.++ ....... +||+.|++.++..++..+..+++||+|+++..++ +.++..+..++....++..
T Consensus 177 ~~~~~~~~~~~~~~~~~-~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 246 (481)
T TIGR00879 177 LVAYGFGSGKVSLNNTL-GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG---------RVEEARKSLARLRGTSGED 246 (481)
T ss_pred HHHHHHHHHhhcCCCCc-cHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcC---------ChHHHHHHHHHHhCCCCCc
Confidence 9999999 6655555 9999999987777777777788999998755421 1122222222222222211
Q ss_pred chhHHHHHHHHHHhhhccccccccccceeccccc--chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHH
Q 008804 317 KLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP--NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATR 394 (553)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (553)
............. .. .+.+..+..+.++++.. ..+..++...+.++........+.++.|.++++.|.+. ...+.
T Consensus 247 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 323 (481)
T TIGR00879 247 KELLDELELIDIK-RS-IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFL 323 (481)
T ss_pred HHHHHHHHHHHHH-HH-HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHH
Confidence 1111110000000 00 00001111122333321 23444555555555555566667888899999988887 77888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCc-----hHHHHHHHHHHHHHHhcCcccc
Q 008804 395 VSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF-----PLVAVSALLLYVGCYQISFGPI 469 (553)
Q Consensus 395 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 469 (553)
......++.+++.++.+++.||++||+.+..+.++.+++++.+.......... ....+....++.++++.+..+.
T Consensus 324 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (481)
T TIGR00879 324 VSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPV 403 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCe
Confidence 88899999999999999999999999999888777777666665322111111 3333444455555666666677
Q ss_pred hhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 008804 470 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEE 546 (553)
Q Consensus 470 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (553)
...+..|.+|++.|+++.|+.+...++|++++|.+.+.+.++.|+...|++.++++++++++.+++.+|+++++.++
T Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 404 PWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred ehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 77888999999999999999999999999999999999999999999999999888888887777788888766543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=328.43 Aligned_cols=446 Identities=41% Similarity=0.626 Sum_probs=357.7
Q ss_pred hhHHHHHHHHHHHHhhhch--hhhccccccccCCCCCCCcccccCch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 008804 92 SVILPFLFPALGGLLFGYD--IGATSGATISLQSPELSGTTWFNLSA--VQLGLVVSGSLYGALLGSILVYSIADFLGRK 167 (553)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk 167 (553)
..........++.+.+|++ .+...+....+..+....+ ...+. .+.+|+.+...++..++++++|+++|++|||
T Consensus 42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~--~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk 119 (513)
T KOG0254|consen 42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYD--LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK 119 (513)
T ss_pred ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3445556677888888987 6666666666665432222 22233 5679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhh
Q 008804 168 RELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 247 (553)
Q Consensus 168 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~ 247 (553)
+.++++.+++.++.+++++++|+++++++|+++|+|.|+.....+.+++|..|++.||...+..+....+|..++..++.
T Consensus 120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977766
Q ss_pred cccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHH
Q 008804 248 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL 327 (553)
Q Consensus 248 ~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (553)
..-+...+||..+.+..+++++..+..+++||+|+|+.+ +++.+++++.+.++++.++.+...+.+ +..
T Consensus 200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~---------~g~~~~a~~~l~~l~g~~~~~~~~~~~--~~~ 268 (513)
T KOG0254|consen 200 GTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE---------KGRLEEAKRSLKRLRGLSPEDVEVELE--LLK 268 (513)
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH---------cCChHHHHHHHHHHhCCCCcchHHHHH--HHH
Confidence 654331279999999999999988888889999999997 578899999999999854333222221 111
Q ss_pred HHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHH
Q 008804 328 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMT 407 (553)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (553)
............+..+.++++....++..++..+..+.++++++...+|.+.+++..|..... .......++..+++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t 346 (513)
T KOG0254|consen 269 IKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGT 346 (513)
T ss_pred HHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHH
Confidence 111111111111223555666445667788889999999999999999999999999887632 666777778888888
Q ss_pred HHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhc-------CchHHHHHHHHHHHHHHhcCcccchhhhhcccCCc
Q 008804 408 WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG-------GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL 480 (553)
Q Consensus 408 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 480 (553)
.++.++.||+|||+.++.+...+.++.+++........ ...+..+...+++...+..+..++.+.+..|.+|.
T Consensus 347 ~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~ 426 (513)
T KOG0254|consen 347 LVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL 426 (513)
T ss_pred HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH
Confidence 99999999999999999999999999988887654432 23466677777888888999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH-HHHHhcccCCCCCHHHHHhhhh
Q 008804 481 RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL-FIVRTVPETKGLSLEEIESKIL 552 (553)
Q Consensus 481 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 552 (553)
+.|+.+.++....+++.+.+....+..+.+..+....|..+++++.+... +.+++.||+|++.+||+++.++
T Consensus 427 ~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 427 RLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence 99999999999999999888877777777665544666666667666666 7888999999999999988664
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=299.65 Aligned_cols=401 Identities=18% Similarity=0.135 Sum_probs=303.9
Q ss_pred HHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 008804 96 PFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV 175 (553)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~ 175 (553)
+++.+.++...+.+..-.++.+.|.+.++ .++|.+|+|++.+++.+.|.++.++.|.++||.+.|+.+.+|++
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p~l~e~-------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi 102 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMPALIED-------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence 34556666677777777777777766665 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhh--hcccCCC
Q 008804 176 LYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--SFQINAV 253 (553)
Q Consensus 176 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~--~~l~~~~ 253 (553)
+.++.+++++++++++.+.++.++.|..+|...|.+...+..|+++++||+..+++++..++|..+.|++. +++..+.
T Consensus 103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~ 182 (448)
T COG2271 103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG 182 (448)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 8877777
Q ss_pred CchHHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhh
Q 008804 254 GGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKS 332 (553)
Q Consensus 254 ~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (553)
+||..|++.++++++..++. +..+|+|+-.-. +..|+ .++++ .+.. ++.++
T Consensus 183 -~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL----------P~ie~-------~~~d~---------~e~~-~~~~~ 234 (448)
T COG2271 183 -GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL----------PPIEE-------YRGDP---------LEIY-EEEKE 234 (448)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHhCCCccccCC----------CCHHH-------hhcCc---------hhhh-hhhcc
Confidence 99999999999999877655 567887751100 00000 00000 0000 00000
Q ss_pred ccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 008804 333 SYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVA 412 (553)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 412 (553)
.+.-...+.-++-+++||..|.+.++..+.+..-+ .+..|.|.|+.+...-+...+......+-.+++.|++++|+
T Consensus 235 ~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~----gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~Gw 310 (448)
T COG2271 235 NEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRY----GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGW 310 (448)
T ss_pred CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 00000111123457889988888777777766665 58999999997754444488999999999999999999999
Q ss_pred hhccc--CCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHH
Q 008804 413 KVDDL--GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA 490 (553)
Q Consensus 413 l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 490 (553)
++||+ |||....+.+.+.....+...+ ..++.+......+++..|+...+..-+.-....|..|++..|++.|+.
T Consensus 311 lSDklfkgrR~p~~~i~~~~i~~~~~~~w---~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~ 387 (448)
T COG2271 311 LSDKLFKGRRGPMALIFMLLITASLVLYW---LAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFV 387 (448)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHH---cCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchh
Confidence 99996 5665554333322222222222 122334455555555566655555555557789999999999999999
Q ss_pred HHHHHH-HHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhccc
Q 008804 491 VLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 491 ~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
..+.++ |++.+....|++.|.+||...|+++.+.++++.++.....+.
T Consensus 388 Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 388 GLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred hhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999 999999999999999999999999888888877766555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=291.04 Aligned_cols=372 Identities=24% Similarity=0.253 Sum_probs=298.0
Q ss_pred HHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 008804 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 176 (553)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~ 176 (553)
++.++++.|..+.+-......+|++.+| +|+|..+.|++.|+|.++++++.++...+.||+.||++++..+.+
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~d-------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAAD-------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 4456677788899988988999999888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCch
Q 008804 177 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW 256 (553)
Q Consensus 177 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~w 256 (553)
+.++++++++++||+.++++|++.|+..|..++...++..+..|+++|++++++..++..++.++|.+++.++-+.. ||
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-GW 166 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GW 166 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-hH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888 99
Q ss_pred HHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccc
Q 008804 257 RYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT 335 (553)
Q Consensus 257 r~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (553)
|+.|++.++++++.++.. ..+| |+- ...+
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP--~~~------------------------------------------------~~~~ 196 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP--PSE------------------------------------------------ISGS 196 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--Ccc------------------------------------------------CCCC
Confidence 999999999999987755 5677 210 0000
Q ss_pred cccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 008804 336 DEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKV 414 (553)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 414 (553)
.+.+..+..+++|+|..+..++...+.+..++. ..+|...++++ .|++. ...++....++++.++|..++|++.
T Consensus 197 ~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~----~ftYi~P~L~~v~g~s~-~~vs~~Ll~~Gv~~~~Gn~~gGrl~ 271 (394)
T COG2814 197 LPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFA----LYTYIRPFLESVAGFSV-SAVSLVLLAFGIAGFIGNLLGGRLA 271 (394)
T ss_pred CCcchhHHHHHhcCchHHHHHHHHHHHHcchhh----hHHhHHHHHHHccCCCH-hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 111122345678888888777665555554443 55555555555 56665 8899999999999999999999999
Q ss_pred cccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHH
Q 008804 415 DDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN 494 (553)
Q Consensus 415 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 494 (553)
|| +.|+.+.....+.++..+.+.+.. .+.+..+....+ .++.............++.. ++.+..+.+++....
T Consensus 272 dr-~~~~~l~~~~~l~a~~~l~l~~~~----~~~~~~~~~~~~-wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~ 344 (394)
T COG2814 272 DR-GPRRALIAALLLLALALLALTFTG----ASPALALALLFL-WGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAF 344 (394)
T ss_pred cc-cchhHHHHHHHHHHHHHHHHHHhc----chHHHHHHHHHH-HHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHH
Confidence 99 888888887777777776665432 333333333333 33322222223334445533 488999999999999
Q ss_pred HHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhccc
Q 008804 495 FGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 495 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
++|..+|..+.|.+.|+.|+....++.+.+.+++.++.+...+.
T Consensus 345 nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 345 NLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998888888877766554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=309.47 Aligned_cols=394 Identities=18% Similarity=0.209 Sum_probs=267.6
Q ss_pred HHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCch--h--HHHH--HHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 008804 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSA--V--QLGL--VVSGSLYGALLGSILVYSIADFLGRKREL 170 (553)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~--~~g~--~~s~~~~~~~i~~~~~G~l~dr~Grk~~~ 170 (553)
.....++.++++||...++...+.+.++ ++.+. . .++. +.++.++++.++++++|+++||+|||+++
T Consensus 18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 90 (490)
T PRK10642 18 ITAASLGNAMEWFDFGVYGFVAYALGKV-------FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKIL 90 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 3455678899999999998888887765 53222 1 1222 25788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchHHH--------HHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHH
Q 008804 171 IIAAVLYALGALTTAYAPGLGV--------LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG 242 (553)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g 242 (553)
.+++++++++++++++++|+++ ++++|+++|++.|+.++...+++.|++|+++|+++.++...+..+|..+|
T Consensus 91 ~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg 170 (490)
T PRK10642 91 AITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG 170 (490)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 89999999999999999999999999999999999999998888888888
Q ss_pred HHhhhccc--------CCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCC
Q 008804 243 YFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPP 314 (553)
Q Consensus 243 ~~l~~~l~--------~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (553)
+.+...+. ... |||+.|++.++++++.+++...+||+|+|...+++ .++.. . +
T Consensus 171 ~~~~~~~~~~~~~~~~~~~-gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~---------~~~~~-------~-~- 231 (490)
T PRK10642 171 AGVVVLISTIVGEANFLDW-GWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDK---------LEQGD-------R-E- 231 (490)
T ss_pred HHHHHHHHHhcCHHHhcCc-cHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHh---------hhhhc-------c-c-
Confidence 76654432 234 99999999887777666666788999986432100 00000 0 0
Q ss_pred CCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhH
Q 008804 315 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADAT 393 (553)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 393 (553)
. ..+.++.++++++++ ..+...... ...+.....++.+..|.|.++++ .+.+. ....
T Consensus 232 ------------------~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~s~-~~~~ 289 (490)
T PRK10642 232 ------------------G-LQDGPKVSFKEIATK-HWRSLLTCI-GLVIATNVTYYMLLTYMPSYLSHNLHYSE-DHGV 289 (490)
T ss_pred ------------------c-ccccccCCHHHHHHH-hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHH
Confidence 0 000112234455543 222222222 22222233444567788988855 56665 5666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhh
Q 008804 394 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLM 473 (553)
Q Consensus 394 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (553)
.......++.+++.++.|+++||+|||+.+..+.++..++...+..... ...........++...+.+ ...+....+
T Consensus 290 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~-~~~g~~~~~ 366 (490)
T PRK10642 290 LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN--SNVIGLIFAGLLMLAVILN-CFTGVMAST 366 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 7777778888999999999999999999887766544333222221111 1112222222222222212 222234466
Q ss_pred hcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC-chhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008804 474 VSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVPETKGL 542 (553)
Q Consensus 474 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (553)
..|.+|++.|+++.|+.+....+++.++|.+.+++.+..+ +..++++..+..+++.+. .++.||++++
T Consensus 367 ~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~ 435 (490)
T PRK10642 367 LPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANR 435 (490)
T ss_pred HHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCC
Confidence 7889999999999998666677778899999999988765 455555555555544443 3445776543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=301.58 Aligned_cols=366 Identities=19% Similarity=0.193 Sum_probs=272.7
Q ss_pred HHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 008804 100 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 179 (553)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i 179 (553)
+.++.+..........+.+|.+.++ +|.|+.++|++.+.+.+++.++++++|+++||+|||+++..+.++.++
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 86 (390)
T PRK03545 14 LALAAFIFNTTEFVPVGLLSDIAQS-------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA 86 (390)
T ss_pred HHHHHHHHHhHHHHHHcchHHHHhH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3344444444444444455666555 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHH
Q 008804 180 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259 (553)
Q Consensus 180 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~ 259 (553)
+++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+.++|..++|++++.+.+.. |||+.
T Consensus 87 ~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~ 165 (390)
T PRK03545 87 SHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-GWRTT 165 (390)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh-cHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777 99999
Q ss_pred HhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccc
Q 008804 260 YGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 338 (553)
Q Consensus 260 f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (553)
|++.++++++..+.. ..+||.|+ +++ .
T Consensus 166 f~~~~~~~~l~~~~~~~~~~~~~~-------------~~~---------------------------------------~ 193 (390)
T PRK03545 166 FLAIGGGALITLLLLIKLLPLLPS-------------EHS---------------------------------------G 193 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC-------------CCc---------------------------------------c
Confidence 999998887766544 34555332 000 0
Q ss_pred ccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008804 339 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 417 (553)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 417 (553)
+..+.++.+|++.++.......+...... ....+.+.++++ .|.+. ...+.......++.++++++.+++.||+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 268 (390)
T PRK03545 194 SLKSLPLLFRRPALVSLYLLTVVVVTAHF----TAYSYIEPFVQQVAGLSE-NFATLLLLLFGGAGIIGSVLFSRLGNRH 268 (390)
T ss_pred hHHHHHHHHhCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00112346677766654433333222222 233455555555 56665 7788888889999999999999999999
Q ss_pred CCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHH
Q 008804 418 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 497 (553)
Q Consensus 418 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 497 (553)
++|... .+..+..++...+... ..+.+ ......++.+.......+.......+..| +.+++++|+.+...++|
T Consensus 269 ~~~~~~-~~~~~~~~~~~~l~~~----~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g 341 (390)
T PRK03545 269 PSGFLL-IAIALLLVCLLLLLPA----ANSEW-HLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIG 341 (390)
T ss_pred chhHHH-HHHHHHHHHHHHHHHH----hchHH-HHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHH
Confidence 987654 3443333333332221 12222 22233333344334444445567777766 68899999999999999
Q ss_pred HHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcc
Q 008804 498 NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVP 537 (553)
Q Consensus 498 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 537 (553)
..+||.+.|.+.|..|++..|...+++.+++.++.+...+
T Consensus 342 ~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 342 IGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999998888887776665553
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=315.47 Aligned_cols=383 Identities=25% Similarity=0.332 Sum_probs=284.6
Q ss_pred ccCc---hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhh
Q 008804 132 FNLS---AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAM 208 (553)
Q Consensus 132 ~~~s---~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 208 (553)
+|++ ..+.+++.+++.+++.++.+++|+++||+|||++++++.++.+++.++++++++++.++++|++.|++.+...
T Consensus 119 ~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~ 198 (505)
T TIGR00898 119 WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198 (505)
T ss_pred ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchH
Confidence 9998 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhh
Q 008804 209 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 288 (553)
Q Consensus 209 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~ 288 (553)
+...+++.|++|+++|+++.++...+..+|.++++.++..+. +||+.|++.+++.++..+..+++||+|+|+..+
T Consensus 199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~- 273 (505)
T TIGR00898 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQ- 273 (505)
T ss_pred HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHC-
Confidence 999999999999999999999999999999999999987653 599999999999888888778899999998763
Q ss_pred ccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhh
Q 008804 289 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT 368 (553)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (553)
++.+++.+.+++..+.+......+...... + ++.+++.++.+++++++++.++...+...+.++....
T Consensus 274 --------~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (505)
T TIGR00898 274 --------GRIEEALKILQRIAKINGKKLPAEVLSLSL-E---KDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF 341 (505)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCCCHHHHhhhh-h---hhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 344555555555444333221111110000 0 0001111234678899999888777665555554432
Q ss_pred ChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCch
Q 008804 369 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP 448 (553)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (553)
.++.. +.+....+.+ ........++..+++.++.+++.||+|||+.+.++.++.+++++++.... ....
T Consensus 342 ~~~~~----~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---~~~~ 410 (505)
T TIGR00898 342 SYYGL----VLDLGNLGGN----IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---VDLY 410 (505)
T ss_pred HHHHH----hccccccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---CCch
Confidence 22222 2222333332 33444556778888999999999999999999988887777766655421 1211
Q ss_pred HHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHH
Q 008804 449 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLA 528 (553)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 528 (553)
+...... +..+++.....+..+.+..|.+|++.|++++|+.++...+|++++|.+.+ + +..+...++.+++++.+++
T Consensus 411 ~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 411 FLRTALA-VLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHH
Confidence 2222222 22223223334566788999999999999999999999999999999998 4 4456667788888777777
Q ss_pred HHHHHHhcccCCCCCHHH
Q 008804 529 VLFIVRTVPETKGLSLEE 546 (553)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~ 546 (553)
+++. +++||+++++++|
T Consensus 488 ~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 488 GILT-LFLPETKGVPLPE 504 (505)
T ss_pred HHHH-HcCcCCCCCCCCC
Confidence 6644 4678998876653
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=302.82 Aligned_cols=393 Identities=15% Similarity=0.140 Sum_probs=278.1
Q ss_pred HHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 008804 100 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 179 (553)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i 179 (553)
..++.++..++....+..++.+.++ +|+|..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLAD-------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence 3445555556665666667777665 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHH
Q 008804 180 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259 (553)
Q Consensus 180 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~ 259 (553)
+.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+++++.+.. +||+.
T Consensus 101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~~ 179 (434)
T PRK11663 101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWRYG 179 (434)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877 99999
Q ss_pred HhhhHHHHHHHHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccc
Q 008804 260 YGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 338 (553)
Q Consensus 260 f~~~~~~~~~~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (553)
|++.++++++..+ ..++++|+|++...+ ...+.+ ++..+ . .++ .+.
T Consensus 180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~---~~~~~-----------------~-------~~~---~~~ 226 (434)
T PRK11663 180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLP---SVGEWR---HDALE-----------------L-------AQQ---QEG 226 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHhhcCCC---Cccccc---ccccc-----------------c-------chh---ccc
Confidence 9998887776544 445678877532100 000000 00000 0 000 000
Q ss_pred ccccce-----ecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 008804 339 SEGSFL-----EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVA 412 (553)
Q Consensus 339 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 412 (553)
++.+++ ..++++.++...+...+..+. ...+..|.|.++. +.|++. .+++.......++.++++++.|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~~g~~~~g~ 301 (434)
T PRK11663 227 AGLSRKEILTKYVLLNPYIWLLSFSYVLVYVV----RAAINDWGNLYMSETLGVDL-VTANSAVSMFELGGFIGALVAGW 301 (434)
T ss_pred cCCChhhhHHHHHhcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 000111 245566555554433333322 2346678888885 457766 77888888999999999999999
Q ss_pred hhccc--CCchhh-HhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHH
Q 008804 413 KVDDL--GRRPLL-IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL 489 (553)
Q Consensus 413 l~d~~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 489 (553)
++||+ ++|+.. ....+...+....+... ... .........+..+++..+..........|.+|++.|+++.|+
T Consensus 302 l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 377 (434)
T PRK11663 302 GSDKLFNGNRGPMNLIFAAGILLSVGSLWLM---PFA-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGF 377 (434)
T ss_pred hHHHhccCCccHHHHHHHHHHHHHHHHHHHc---ccc-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHH
Confidence 99998 333332 22222222222111111 111 122222222222222222222233567899999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008804 490 AVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 542 (553)
Q Consensus 490 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (553)
.++..++|.+++|.+.|.+.|..|+...|++.+++.+++++..+...++++++
T Consensus 378 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 378 VGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999999999999999999999999999999888888877666655555443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=308.74 Aligned_cols=399 Identities=17% Similarity=0.094 Sum_probs=277.4
Q ss_pred hHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 008804 93 VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII 172 (553)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~ 172 (553)
.+.++.+..++.++...+...++...+.+.++ +|++..+.|++.+++.+++++++++.|+++||+|||+++..
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~ 99 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIST-------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPF 99 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHH
Confidence 33345556666666666788888777777766 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhh
Q 008804 173 AAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 247 (553)
Q Consensus 173 ~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~ 247 (553)
+.++++++.++.++ +++++.++++|+++|++.+...+...+++.||+|+++|+++++++..+.++|.++++++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 100 LLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence 88888877776655 6899999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCC--CchHHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHH
Q 008804 248 FQINAV--GGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIE 324 (553)
Q Consensus 248 ~l~~~~--~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (553)
++.... .+||..|.+.++++++..++. ++.+++|+... ..+. ++ . ..+.. .+ +.
T Consensus 180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~---------~~~~-~~---~---~~~~~-~~---~~--- 236 (467)
T PRK09556 180 WGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELG---------WGKA-EE---I---FGEPI-SE---ED--- 236 (467)
T ss_pred HHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcC---------CCCh-hh---c---ccCcc-ch---hh---
Confidence 655432 269999999888887765544 44566664100 0000 00 0 00000 00 00
Q ss_pred HHHHHhhhcccccccccc-ceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHH
Q 008804 325 DTLVSLKSSYTDEKSEGS-FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVF 402 (553)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 402 (553)
. ..+.++...... .+..++++.++...+..++.... +.....|.|.|+++ .|.+. .+++.......++
T Consensus 237 ---~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~p~yl~~~~g~s~-~~a~~~~~~~~~~ 306 (467)
T PRK09556 237 ---K--ETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIV----RIGIDNWSPVYAFQELGFSK-EDAINTFTLFEIG 306 (467)
T ss_pred ---h--ccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHH
Confidence 0 000000000000 11256777666555433333322 23467889988865 67766 7788888888899
Q ss_pred HHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccc
Q 008804 403 KLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT 482 (553)
Q Consensus 403 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 482 (553)
.+++.++.|+++||+++|+.......+..++..++.. . . ..+.+ ......+..+....+..........|.+|++.
T Consensus 307 ~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~-~-~-~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~ 382 (467)
T PRK09556 307 ALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY-Q-H-ATSEY-MYLASLFALGFLVFGPQLLIGVAAVGFVPKKA 382 (467)
T ss_pred HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH-H-h-cCcHH-HHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh
Confidence 9999999999999999998776554433332222221 1 1 12222 22222222332222222222356679999999
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHhHHhHH------------hhCchhHHHHHHHHHHHHHHHHHHh
Q 008804 483 RGRGISLAVLTNFG-SNAIVTFAFSPLKE------------LLGAENIFLLFAAIAFLAVLFIVRT 535 (553)
Q Consensus 483 ~~~~~g~~~~~~~~-g~~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~ 535 (553)
+|++.|+.+..+++ |.+++|.+.|.+.| ..||...|+++.++.+++.++.+..
T Consensus 383 ~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 383 IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 77999999999999 5778899988887777776655543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=296.66 Aligned_cols=392 Identities=18% Similarity=0.207 Sum_probs=272.0
Q ss_pred HHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 008804 96 PFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV 175 (553)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~ 175 (553)
...+++++.++.++|...++...+.+.++ +|++..++|++.+++.+++++++++.|+++||+|||+++..+++
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 81 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKD-------LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV 81 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhh-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence 34455566677888888888888776665 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCC---
Q 008804 176 LYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA--- 252 (553)
Q Consensus 176 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~--- 252 (553)
+++++++++++++|++.++++|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++++++++...
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred --CCchHHHHhhhHHHHHHHHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHH
Q 008804 253 --VGGWRYMYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVS 329 (553)
Q Consensus 253 --~~~wr~~f~~~~~~~~~~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (553)
..|||+.|++.++++++..+ .++++||+|+. +....+ ++.+...+..+....+.+.++...
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~--------~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~------ 225 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDK--------AKWLDE--EDKKALKEMIDNDQLTLEQPEGAF------ 225 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhccCCCccc--------CCCCCH--HHHHHHHHHHHhcccccccccccc------
Confidence 12899999999888877555 44677888841 000000 011111111111000000000000
Q ss_pred hhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHc--CCCCchhhHHHHHHHHHHHHHHH
Q 008804 330 LKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA--GFSAAADATRVSVVIGVFKLVMT 407 (553)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 407 (553)
. + +.......+++++ ++.++... +.+++....++.+..|.|.++++. +.+. .+++.......++.+++.
T Consensus 226 -~-~-~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~-~~~~~~~~~~~l~~~~g~ 296 (412)
T TIGR02332 226 -A-H-AAMPQRSMLREIF-TPAIMLYT----LAYFCLTNTLSAINIWTPQILQSFNQGSSN-IMIGLLAAIPQFCTIFGM 296 (412)
T ss_pred -c-c-ccccHHHHHHHhc-ChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-HHhHHHhhHHHHHHHHHH
Confidence 0 0 0000011122333 34333322 333333334556788999999875 3444 678888999999999999
Q ss_pred HHHHHhhcccCCchhh-HhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhH
Q 008804 408 WIAVAKVDDLGRRPLL-IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRG 486 (553)
Q Consensus 408 ~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 486 (553)
++.|+++||+++|+.. ....++..++. .+... ............+ .+.......+..+....|.+|++.|+++
T Consensus 297 l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~a 370 (412)
T TIGR02332 297 IWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA----TDHNLIQLLGIIM-ASMGSFSAMAIFWTTPDQSISLQARAIA 370 (412)
T ss_pred HHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh----cCCHHHHHHHHHH-HHHHhhhhhhHHHhhcccccchHHHHHH
Confidence 9999999999987753 33333333322 22211 1222222111111 1111112223344555778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhhC-chhHHHHHHHHH
Q 008804 487 ISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIA 525 (553)
Q Consensus 487 ~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~ 525 (553)
+|+.+..+++|++++|.+.|.+.|..| |...+.+.+++.
T Consensus 371 ~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 371 IAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 999999999999999999999999886 777777665543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=298.88 Aligned_cols=369 Identities=17% Similarity=0.180 Sum_probs=271.9
Q ss_pred HHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 008804 98 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 177 (553)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~ 177 (553)
....++.+..+++.....+..+.+.++ +|+++.+.+++.+++.+++.++++++|+++||+|||++++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 21 FSAWLGYVFDGFDFMLIFYIMYLIKAD-------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 344566677788888877777777665 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchH
Q 008804 178 ALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWR 257 (553)
Q Consensus 178 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr 257 (553)
+++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+.+.+.+.. +||
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~-~w~ 172 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY-GWR 172 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-CHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887777 999
Q ss_pred HHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccc
Q 008804 258 YMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 337 (553)
Q Consensus 258 ~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (553)
+.|++.++..++........||++++...+ .+..++..+ ...+
T Consensus 173 ~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~---------------------~~~~~~~~~----------------~~~~ 215 (426)
T PRK12307 173 AAFFVGLLPVLLVIYIRARAPESKEWEEAK---------------------LSGKGKHSQ----------------SAWS 215 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChHHHHhh---------------------hhccccccc----------------cchh
Confidence 999986554444333333345554321110 000000000 0000
Q ss_pred cccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008804 338 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 417 (553)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 417 (553)
.....++++++++.++.........+ ........+..+.|.++++.+.+. ...+.......++.++++++.+++.||+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 293 (426)
T PRK12307 216 VFSLSMKGLFNRAQFPLTLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDT-GVVSNLMTAAAFGTVLGNIVWGLCADRI 293 (426)
T ss_pred hhhHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01123456777776665443332222 222222335667888888887766 6778888888899999999999999999
Q ss_pred CCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHH
Q 008804 418 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 497 (553)
Q Consensus 418 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 497 (553)
+||+.+..+.++..+..+.+... ............+..+....+..+....++.|.+|++.|++++|+.+....++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~ 369 (426)
T PRK12307 294 GLKKTFSIGLLMSFLFIFPLFRI----PQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATS 369 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHH
Confidence 99998887776665544433321 11222222222222222222333445577889999999999999999999999
Q ss_pred HHHHHHHhHHhHHhhCchhH
Q 008804 498 NAIVTFAFSPLKELLGAENI 517 (553)
Q Consensus 498 ~~~~~~~~g~l~~~~g~~~~ 517 (553)
+.++|.+.|.+.+..|+...
T Consensus 370 ~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 370 GTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred HHHHHHHHHHHHHcccHHHH
Confidence 99999999999999886543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=296.79 Aligned_cols=380 Identities=23% Similarity=0.259 Sum_probs=281.1
Q ss_pred hHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 008804 93 VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII 172 (553)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~ 172 (553)
.+.++.+..+..++++++....+...|.+.++ +|.++.+.|++.+.+.++..++.++.|+++||+|||+++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (406)
T PRK11551 13 LALTIGLCFLVALLEGLDLQSAGVAAPRMAQE-------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV 85 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 33445556666788888888888888877766 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCC
Q 008804 173 AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA 252 (553)
Q Consensus 173 ~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~ 252 (553)
+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 165 (406)
T PRK11551 86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165 (406)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred CCchHHHHhhhHHHHHHHHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhh
Q 008804 253 VGGWRYMYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLK 331 (553)
Q Consensus 253 ~~~wr~~f~~~~~~~~~~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (553)
. +||+.|++.+++.++..+ ...++||+|++...+. +.++ .+.
T Consensus 166 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~------------------~~~--------- 208 (406)
T PRK11551 166 A-AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG---------AGKQ------------------RAP--------- 208 (406)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC---------cchh------------------hhh---------
Confidence 6 899999998877666554 4456788775321100 0000 000
Q ss_pred hccccccccccceecccc---cchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHH
Q 008804 332 SSYTDEKSEGSFLEVFQG---PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTW 408 (553)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (553)
..+..++. +..+...+.. +...........|.|.++++.|.+. .+.+.......++.+++.+
T Consensus 209 ----------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~ 273 (406)
T PRK11551 209 ----------VLRALFGEGRATATLLLWISY----FFTLIVLYFLLNWLPSLLVGQGLSR-SQAGLVQIAFNIGGALGSL 273 (406)
T ss_pred ----------hHHHHhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCh-hhhhHHHHHHHHHHHHHHH
Confidence 00001111 1111111111 1112223346667888988888776 7888889999999999999
Q ss_pred HHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHH
Q 008804 409 IAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 488 (553)
Q Consensus 409 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 488 (553)
+.|++.||+++|+.+..+.+...++.+.+... .+.+. .....+..++...+..+...++..|.+|++.|+++.|
T Consensus 274 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 347 (406)
T PRK11551 274 LIGALMDRLRPRRVVLLIYAGILASLAALAAA-----PSFAG-MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVG 347 (406)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-----CcHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhh
Confidence 99999999999998887665555554433321 22222 2223333333333445566688899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHhhCc-hhHHHHHHHHHHHHHHHHHHhcc
Q 008804 489 LAVLTNFGSNAIVTFAFSPLKELLGA-ENIFLLFAAIAFLAVLFIVRTVP 537 (553)
Q Consensus 489 ~~~~~~~~g~~~~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ 537 (553)
+.+....+|..++|.+.|.+.+..+. ...++....+.+++.++.+...+
T Consensus 348 ~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 348 AAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987653 34444444444444444443333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=293.93 Aligned_cols=375 Identities=21% Similarity=0.246 Sum_probs=254.8
Q ss_pred HHHHHHHHHHhhhchhhhccccccccCCCCCCCcccc---cCchhHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 008804 96 PFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWF---NLSAVQLGL---VVSGSLYGALLGSILVYSIADFLGRKRE 169 (553)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~~g~---~~s~~~~~~~i~~~~~G~l~dr~Grk~~ 169 (553)
.++..+++.+++.+|...++...+.+.++ + +.+..+.+. +.+...++..++++++|+++||+|||++
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~ 95 (432)
T PRK10406 23 AIVGASSGNLVEWFDFYVYSFCSLYFAHI-------FFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS 95 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34455677888999999888888877665 4 345554444 4444555556999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchHH--------HHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHH
Q 008804 170 LIIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 241 (553)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 241 (553)
+..+.++++++++++++++++. .++++|+++|++.|..++...+++.|++|+++|+++.++.+.+...|.++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~ 175 (432)
T PRK10406 96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL 175 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999998874 68999999999999999999999999999999999999999888888888
Q ss_pred HHHhhhccc--------CCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCC
Q 008804 242 GYFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP 313 (553)
Q Consensus 242 g~~l~~~l~--------~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (553)
++.+...+. ..+ |||++|++.++++++..++...+||+|++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~-gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~--------------------------- 227 (432)
T PRK10406 176 ALLVVVVLQQTLEDAELREW-GWRIPFALGAVLAVVALWLRRQLDETSQQETR--------------------------- 227 (432)
T ss_pred HHHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCCCCchHHHh---------------------------
Confidence 887655432 134 99999999888887766665667776642000
Q ss_pred CCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhh
Q 008804 314 PGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADA 392 (553)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 392 (553)
+.++..++++++++++.+...+... +.....++.+..|.|.++++ .+.+. .+.
T Consensus 228 ----------------------~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~lp~~l~~~~g~s~-~~~ 281 (432)
T PRK10406 228 ----------------------ALKEAGSLKGLWRNRRAFIMVLGFT---AAGSLCFYTFTTYMQKYLVNTAGMHA-NVA 281 (432)
T ss_pred ----------------------hhcccccHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCH-HHH
Confidence 0000123455666655443333222 11122233466788888865 56665 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhh
Q 008804 393 TRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWL 472 (553)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (553)
+.......++..++.++.|+++||++||+.+..+.++.++....+..... ........+....+...+.. ...+..+.
T Consensus 282 ~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 359 (432)
T PRK10406 282 SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-NVSSPYAAFGLVMCALLIVS-FYTSISGI 359 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 77777777788888899999999999999877665544333322211111 11122222211211111111 12234557
Q ss_pred hhcccCCccchhhHHHHHHHHHHH-HHHHHHHHhHHhHHhhC-chhHHHHHHHHHHHHHHHHHH
Q 008804 473 MVSEIFPLRTRGRGISLAVLTNFG-SNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 473 ~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 534 (553)
+.+|.+|++.|+++.|+.+..+++ .+...|.+.+.+ +..| +...+++.+++.+++.+..++
T Consensus 360 ~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 360 LKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999887664 344577777744 5566 444555555555555554444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=287.87 Aligned_cols=360 Identities=16% Similarity=0.107 Sum_probs=271.9
Q ss_pred hhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHH
Q 008804 112 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 191 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~ 191 (553)
..+++.+|.+.++ +|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++
T Consensus 26 ~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~ 98 (393)
T PRK09705 26 TSVGPLLPQLRQA-------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSA 98 (393)
T ss_pred hccchhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchH
Confidence 5566777777766 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHH
Q 008804 192 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 271 (553)
Q Consensus 192 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~ 271 (553)
.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.+...+||+.+.+.++..++..
T Consensus 99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 78999999999999999999999999887765489999877666655444
Q ss_pred HHhcccC-CchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceeccccc
Q 008804 272 IGMWSLP-PSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 350 (553)
Q Consensus 272 i~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (553)
+.++... +.|+ + +++++...++.++++
T Consensus 178 ~~~~~~~~~~~~--------------~--------------------------------------~~~~~~~~~~~l~~~ 205 (393)
T PRK09705 178 FAWWWQSAREVA--------------S--------------------------------------SHKTTTTPVRVVFTP 205 (393)
T ss_pred HHHHHHhcCCCc--------------c--------------------------------------ccCCCcCCcccccCH
Confidence 3333221 1110 0 000001123445556
Q ss_pred chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHH
Q 008804 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 430 (553)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 430 (553)
..+...+...+.. ..+.....|.|.++++.+.+. .+++.......++.++++++.+++.||++||+....+..+.
T Consensus 206 ~~~~l~~~~~~~~----~~~~~~~~~lp~~l~~~g~s~-~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~ 280 (393)
T PRK09705 206 RAWTLGVYFGLIN----GGYASLIAWLPAFYIEIGASA-QYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ 280 (393)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 5554443332222 233457778888888887776 78899999999999999999999999999999888887766
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccC-CccchhhHHHHHHHHHHHHHHHHHHHhHHhH
Q 008804 431 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF-PLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 509 (553)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 509 (553)
.++..++... +.+... ... . ..+.......+.......+.. |++.+++.+|+.+...++++.++|.+.|++.
T Consensus 281 ~~~~~~~~~~----~~~~~~-~~~-~-l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~ 353 (393)
T PRK09705 281 LVGFCGFIWL----PLQLPV-LWA-M-VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR 353 (393)
T ss_pred HHHHHHHHHc----cchHHH-HHH-H-HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544321 111111 111 1 222222333344444555655 4678999999999999999999999999999
Q ss_pred HhhC-chhHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008804 510 ELLG-AENIFLLFAAIAFLAVLFIVRTVPETKGLS 543 (553)
Q Consensus 510 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (553)
|..| +...|.+..+++++..++.+.+.+|++.+.
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 354 SISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 9987 667777777777777777777788877654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-43 Score=350.21 Aligned_cols=433 Identities=33% Similarity=0.560 Sum_probs=331.0
Q ss_pred HHHHHHhhhchhhhccccccccCC--CCCCCccc--ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 008804 100 PALGGLLFGYDIGATSGATISLQS--PELSGTTW--FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAV 175 (553)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~ 175 (553)
+.++.+.+||+...++........ ....++.. .+.++.+.+++.+...+|..+|++++|.++||+|||+.++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 456668888998887666555441 11111100 11245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc---hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCC
Q 008804 176 LYALGALTTAYAP---GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA 252 (553)
Q Consensus 176 ~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~ 252 (553)
+..+++++.++++ +++.++++|+++|++.|+..+....++.|..|+++|++..++.+.+..+|.+++..++..+...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999998887665332
Q ss_pred C--CchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHh
Q 008804 253 V--GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSL 330 (553)
Q Consensus 253 ~--~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (553)
. .+||+.+++.++++++..+..+++||||+|+..+ ++.+++++.++++++.+..++...+..+ +.
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~---------~~~~~A~~~l~~~~~~~~~~~~~~~~~~----~~ 231 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSK---------GRDEEAEKVLRKLRGKEIEDEEIEEIKA----EK 231 (451)
T ss_pred cccccccccccccccccccccccccccccccceeccc---------cccccccccccccccccccccccccccc----cc
Confidence 2 1499999999999998888889999999999874 5566777777775554322221111111 11
Q ss_pred hhccccccccccceecccccc-hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHH
Q 008804 331 KSSYTDEKSEGSFLEVFQGPN-LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWI 409 (553)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (553)
++.++.+.+++++++++. .++..+...+..+....++....+|.+.++++.+.+.. ........+..+++.++
T Consensus 232 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~ 305 (451)
T PF00083_consen 232 ---KESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLL 305 (451)
T ss_pred ---ccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccc
Confidence 111111256788888765 34555555566666667777788888888888877762 33344555667777888
Q ss_pred HHHhhcccCCchhhHhHHHHHHHHHHHHH-HHHHhhcC---chHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhh
Q 008804 410 AVAKVDDLGRRPLLIGGVCGIALSLLLLS-AYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 485 (553)
Q Consensus 410 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 485 (553)
+.++.||+|||++++.+..+.+++.+.+. ......+. .....+...++....+..+..+..+.+..|.+|++.|++
T Consensus 306 ~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~ 385 (451)
T PF00083_consen 306 AIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRST 385 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccc
Confidence 88999999999999988888877777664 11111111 133333444444455666777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHhhh
Q 008804 486 GISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 551 (553)
Q Consensus 486 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (553)
+.|+....+.+++++++.+...+.+..+....+.++++++++..++.+++.|||++++++|+++++
T Consensus 386 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 386 GIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 999999999999999999999988888766778888888888888889999999999999999864
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=286.26 Aligned_cols=384 Identities=17% Similarity=0.159 Sum_probs=259.1
Q ss_pred HHHHHHHHHhhhchhhhcccccccc-CCCCCCCcccc-cCchhHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhhhHH
Q 008804 97 FLFPALGGLLFGYDIGATSGATISL-QSPELSGTTWF-NLSAVQLGLVV-----SGSLYGALLGSILVYSIADFLGRKRE 169 (553)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~s~~~~g~~~-----s~~~~~~~i~~~~~G~l~dr~Grk~~ 169 (553)
.....++.++++||...++...+.. .++. + +.++. .+++. ++.+++..+++++.|+++||+|||++
T Consensus 24 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 24 ALGSFAGAVVDWYDFLLYGITAALVFNREF------FPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 4455667888999988877665532 2221 1 34444 35543 35567788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchHH--------HHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHH
Q 008804 170 LIIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 241 (553)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 241 (553)
++.+.+++++++++++++++++ .++++|+++|++.|...+....++.|++|+++|++..+....+..+|..+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 58899999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccC--------CCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCC
Q 008804 242 GYFVGSFQIN--------AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRP 313 (553)
Q Consensus 242 g~~l~~~l~~--------~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (553)
+..+...+.. .. +||++|++.+++.++...+....||+|+|...+.++ +
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~-gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~---------~------------- 233 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSW-GWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ---------A------------- 233 (438)
T ss_pred HHHHHHHHHHhCCHHHhhcc-ChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc---------c-------------
Confidence 8877665432 34 999999998888766555556678888653221000 0
Q ss_pred CCCchhHHHHHHHHHHhhhcccccccccc-ceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchh
Q 008804 314 PGDKLSERQIEDTLVSLKSSYTDEKSEGS-FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAAD 391 (553)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 391 (553)
+.+++.+ .+.++++++.+...+.. .+......+....|.|.++++ .+.+. ..
T Consensus 234 ----------------------~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~y~~~~~g~s~-~~ 287 (438)
T PRK09952 234 ----------------------AAKKRIPVIEALLRHPGAFLKIIAL---RLCELLTMYIVTAFALNYSTQNLGLPR-EL 287 (438)
T ss_pred ----------------------cccccCCHHHHHHHchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCH-HH
Confidence 0000001 11234444443332211 122222233456677777754 55554 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchh
Q 008804 392 ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISW 471 (553)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (553)
........++..+++.++.|+++||+|||+.+..+.++..++...+..... ..+....++...+..++......+..+
T Consensus 288 ~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~ 365 (438)
T PRK09952 288 FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE--AQSIFWIVFFSIMLANIAHDMVVCVQQ 365 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666777888999999999999999888776655444333322111 122222222222222222223344556
Q ss_pred hhhcccCCccchhhHHHHHHHH-HHHHHHHHHHHhHHhHHhhC--chhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 472 LMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 472 ~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
++..|.+|++.|+++.|+.+.. ..+++.++|.+.+.+.+..+ |...+...+++.+++.+..+ ..+++
T Consensus 366 ~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~ 435 (438)
T PRK09952 366 PMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKDN 435 (438)
T ss_pred HHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hcccc
Confidence 8899999999999999997665 45888999999999988653 66666666666666655444 44553
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=260.65 Aligned_cols=391 Identities=19% Similarity=0.237 Sum_probs=295.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
++.+..|..++......|..+++..||.++|++|||+.+.+..+..++..++.+.++|+..+++.|.+.|+|.|+ .|..
T Consensus 108 w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~ 186 (528)
T KOG0253|consen 108 WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVD 186 (528)
T ss_pred hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccC
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG 291 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~ 291 (553)
.++-.|..|..+|...+-+. ..+.+|.++...++-.+..+. ||||.......+..+.++..+++||||+|+..
T Consensus 187 ~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~-gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~----- 259 (528)
T KOG0253|consen 187 SAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF-GWRYLLFTSSTPLMFAARFLVWVYESPRFYLA----- 259 (528)
T ss_pred HHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHhHHHHHHHHHhhcccCcchhhh-----
Confidence 99999999999999888777 999999999999998888888 99999999998888888888999999999887
Q ss_pred CCchhhhHHHHHHHHHhHhcCCCCCch------hH-HHHHHHHHHhhh--ccccccccccceecccccchhHHHHHHHHH
Q 008804 292 KGSLQEYKEQAISALGKLRRRPPGDKL------SE-RQIEDTLVSLKS--SYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 362 (553)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (553)
+++++++.+.++++.+.|...-. +. ++.+++.....+ ....+.......+++. |.+++..+.....
T Consensus 260 ----~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~i 334 (528)
T KOG0253|consen 260 ----KGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRI 334 (528)
T ss_pred ----cCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHH
Confidence 46677777777776655433311 11 111111111111 1111222333445554 5555555545455
Q ss_pred HHHHhhChhhHHHhHHHHHHHcC--------------------CCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchh
Q 008804 363 LFQQITGQPSVLYYAGPILQSAG--------------------FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 422 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 422 (553)
++.+...++........+++... .+. .....-..+..+..+.|.++.+++.||+|||+.
T Consensus 335 wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~-~~dYrdllitslaefPGlLIt~~iverlGRKkT 413 (528)
T KOG0253|consen 335 WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSV-AKDYRDLLITSLAEFPGLLITGVIVERLGRKKT 413 (528)
T ss_pred HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccc-hhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH
Confidence 55544444444444333333211 111 122334556778889999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHH
Q 008804 423 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 502 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 502 (553)
+..++++++++.+.+... .......+..+....+..+++. +.+.|..|++|+..|+++.|.......+|+++.|
T Consensus 414 Mal~l~~f~iflfll~~c-----~~rn~~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p 487 (528)
T KOG0253|consen 414 MALSLILFGIFLFLLTTC-----KTRNAYTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSP 487 (528)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhh
Confidence 999998888877776543 2233344444444455554444 5679999999999999999999999999999999
Q ss_pred HHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCCCH
Q 008804 503 FAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSL 544 (553)
Q Consensus 503 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (553)
.+. +........+..+++++++++++...++-.|+|+|.+
T Consensus 488 ~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 488 VIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 988 5444556677888899999999888888889998863
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=289.70 Aligned_cols=396 Identities=15% Similarity=0.083 Sum_probs=281.5
Q ss_pred HHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 008804 94 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 173 (553)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~ 173 (553)
+..+..++++.++...|.++++..+|.+..+ +|.+..+.+|+.+.|.++++++.+++|+++||+|||++++.+
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~ 77 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMT-------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLG 77 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4456777888899999999999999998877 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhcc-ccccchhHHhHHHHHHHHHHHHHHHhhhcccCC
Q 008804 174 AVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQINA 252 (553)
Q Consensus 174 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~ 252 (553)
.++++++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++++.+.
T Consensus 78 ~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 78 GTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999998888887776 678999999999999999999999999999988
Q ss_pred CCchHHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHH---HHhHhcCCCCCchhHHHHHH---
Q 008804 253 VGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISA---LGKLRRRPPGDKLSERQIED--- 325 (553)
Q Consensus 253 ~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--- 325 (553)
. +||+.|++...++++.+++. +++|+++.. .+++.+..+........ ...+................
T Consensus 158 ~-gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~-----~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 231 (495)
T PRK14995 158 F-YWGSVFLINVPIVLVVMGLTARYVPRQAGR-----RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLT 231 (495)
T ss_pred C-ChHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 7 99999999988877766544 556765420 00111111110000000 00011111111111000000
Q ss_pred ----HHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHH
Q 008804 326 ----TLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIG 400 (553)
Q Consensus 326 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 400 (553)
...-...+ .+.+++.-..+++|++.+....+..++..... ....++.|.+++. .|.+. .+++....+..
T Consensus 232 ~~~~l~~f~~~e-~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lq~v~g~s~-~~ag~~~~~~~ 305 (495)
T PRK14995 232 GALLLGLFIRTQ-LAASRPMIDMRLFTHRIILSGVVMAMTAMITL----VGFELLMAQELQFVHGLSP-LEAGMFMLPVM 305 (495)
T ss_pred HHHHHHHHHHHH-hcCCCCCcCHHHhCCcccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 00000000 11111112246788877665554333333322 2456678888876 45555 89999999999
Q ss_pred HHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCc
Q 008804 401 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL 480 (553)
Q Consensus 401 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 480 (553)
++..++.++.|++.||+|+|+.+..+.++..++.+.+.... .....+.. ....+..+.......+.......+..|+
T Consensus 306 ~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~--~~~~~~~~-~~~~~l~G~g~g~~~~~~~~~~~~~~~~ 382 (495)
T PRK14995 306 VASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD--FSTQQWQA-WGLMALLGFSAASALLASTSAIMAAAPP 382 (495)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc--CCCchHHH-HHHHHHHHHhHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999988888777766665544321 11222222 2223333333333334444667788899
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHHhHHh
Q 008804 481 RTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 511 (553)
Q Consensus 481 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 511 (553)
++++.+.++.++.+.+|+.+|+.+.|.+.++
T Consensus 383 ~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 383 EKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=282.59 Aligned_cols=349 Identities=18% Similarity=0.085 Sum_probs=246.7
Q ss_pred hccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHH
Q 008804 113 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~ 192 (553)
.+++.+|.+.++ +|+|..+.|++.+.+.+++.+++++.|+++||+|||+++..++.....+.+.....++++.
T Consensus 9 ~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (368)
T TIGR00903 9 TFSPVLSLVAED-------IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW 81 (368)
T ss_pred HHHhhHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 445566666665 9999999999999999999999999999999999999877665555554443344479999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHH
Q 008804 193 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 272 (553)
Q Consensus 193 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i 272 (553)
++++|+++|++.+. .+.....+.|++|+++|++++++.+.+..+|.++++++++++.+.. |||+.|++.++++++..+
T Consensus 82 l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~-gWr~~f~~~~~l~~~~~~ 159 (368)
T TIGR00903 82 LLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG-GLQLLIIPIAAVAAAGII 159 (368)
T ss_pred HHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHH
Confidence 99999999999986 5566667799999999999999999999999999999999988877 999999998888877655
Q ss_pred -HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccc
Q 008804 273 -GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 351 (553)
Q Consensus 273 -~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (553)
.++++||+|++..+ ... ..+ . ..+++++++++.
T Consensus 160 ~~~~~lp~~p~~~~~----------------------------~~~--~~~---~-------------~~~~~~ll~~~~ 193 (368)
T TIGR00903 160 LVLAALPALPFQAAE----------------------------GFG--FKD---A-------------VKEFGALAGRKD 193 (368)
T ss_pred HHHHHcCCCCCCCCC----------------------------Ccc--hHH---H-------------HHHHHHHHcChh
Confidence 44678888752100 000 000 0 012456788887
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCc---hhhHh-HH
Q 008804 352 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR---PLLIG-GV 427 (553)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---~~~~~-~~ 427 (553)
++...+..++.... ++.+..|+|.++++.+++. . .+.......+.+.++ .++++||..|| +.... ..
T Consensus 194 ~~~~~~~~~~~~~~----~~~~~~wlp~~L~~~g~s~-~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~ 264 (368)
T TIGR00903 194 LWIIGAILGFGVAL----FDNLAIWLEAALRPAGLED-I-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAA 264 (368)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCh-H-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHH
Confidence 77666544444333 3457789999998877664 3 555555555555544 46777776543 33222 22
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 008804 428 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 507 (553)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 507 (553)
++.++....+.. ....... +......+++.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.
T Consensus 265 ~~~a~~~~~~~~-----~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~ 338 (368)
T TIGR00903 265 LLIAAFFLALAF-----ELNRLAL-FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAML 338 (368)
T ss_pred HHHHHHHHHHHH-----ccccHHH-HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHH
Confidence 222222222221 1122222 2222223333333445566889999999999999999999999999999999988
Q ss_pred hHHhhCchhHHHHHHHHHHHHHHHHH
Q 008804 508 LKELLGAENIFLLFAAIAFLAVLFIV 533 (553)
Q Consensus 508 l~~~~g~~~~~~~~~~~~~~~~~~~~ 533 (553)
+.. |....|.++++..+++++..+
T Consensus 339 ~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 339 FIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 873 667788888888877777654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=284.48 Aligned_cols=384 Identities=18% Similarity=0.203 Sum_probs=271.5
Q ss_pred HHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 008804 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 176 (553)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~ 176 (553)
+....++.+..+++....+...+.+.++ +|++..+.+++.+++.++..++.++.|+++||+|||++++++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGE-------FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4556677788888888888888887766 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCC-c
Q 008804 177 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-G 255 (553)
Q Consensus 177 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~-~ 255 (553)
.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+ +
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876651 4
Q ss_pred hHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccc
Q 008804 256 WRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT 335 (553)
Q Consensus 256 wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (553)
||+.|++.++..++..+....+||++++...++ +.++..+..++..+.++.. .....
T Consensus 167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~~~~----------- 223 (405)
T TIGR00891 167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHA---------GKALVRTMVDILYGGEHRI---ANIVM----------- 223 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhh---------hhhhhhhHHHHHhccchhh---hhhhh-----------
Confidence 999999887777766666677888775432110 0000111111111000000 00000
Q ss_pred cccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 008804 336 DEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKV 414 (553)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 414 (553)
......+... ++.+......................+.|.++. +.+.+. .+.+.+.....++.+++.++.+++.
T Consensus 224 --~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~ 298 (405)
T TIGR00891 224 --TLAAAMVQSA--GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSP-HTVANIVVFSNIGAIVGGCVFGFLG 298 (405)
T ss_pred --hhhHHhhhhh--hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001100 111111111111111111111234455666664 456666 7888888899999999999999999
Q ss_pred cccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHH
Q 008804 415 DDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN 494 (553)
Q Consensus 415 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 494 (553)
||++||+.+..+.++..+....+... .. .........+..++...+..+....++.|.+|++.|++++|+.+...
T Consensus 299 dr~g~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 373 (405)
T TIGR00891 299 DWLGRRKAYVCSLLAGQLLIIPVFAI----GA-NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLG 373 (405)
T ss_pred HHhCchhhhHHHHHHHHHHHHHHHHh----CC-chHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHH
Confidence 99999998887766543332222211 12 22222222233333333444556678899999999999999999999
Q ss_pred HHHHHHHHHHhHHhHHhhC-chhHHHH
Q 008804 495 FGSNAIVTFAFSPLKELLG-AENIFLL 520 (553)
Q Consensus 495 ~~g~~~~~~~~g~l~~~~g-~~~~~~~ 520 (553)
.+|+.++|.+.|.+.|..| |...+..
T Consensus 374 ~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 374 NLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999998 6554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=284.48 Aligned_cols=358 Identities=20% Similarity=0.278 Sum_probs=242.2
Q ss_pred HHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHH-HHHH-----HHHHHHHHHHHHHhhhhhhhhHHH
Q 008804 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLV-VSGS-----LYGALLGSILVYSIADFLGRKREL 170 (553)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~-----~~~~~i~~~~~G~l~dr~Grk~~~ 170 (553)
....+++.+++.+|...++...|.+.++ ++.++.+.+.+ .+.. .++..+++++.|+++||+|||+++
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l 89 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKT-------FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL 89 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence 5566778899999999999999988877 88877776543 3332 233357899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchHH--------HHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHH
Q 008804 171 IIAAVLYALGALTTAYAPGLG--------VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLG 242 (553)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g 242 (553)
+.+.+++++++++++++++++ .++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g 169 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA 169 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 468999999999999999999999999999999999999999888888887
Q ss_pred HHhhhccc--------CCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCC
Q 008804 243 YFVGSFQI--------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPP 314 (553)
Q Consensus 243 ~~l~~~l~--------~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (553)
+.+++.+. +.. |||++|++.++...+..+.....||++++...+ .
T Consensus 170 ~~~g~~l~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-----------------------~--- 222 (434)
T PRK15075 170 ALLGYLLNQWLSPAQMAEW-GWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-----------------------H--- 222 (434)
T ss_pred HHHHHHHHHhCCHHHHhcc-chHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh-----------------------h---
Confidence 77777652 344 999999986544332222222233332210000 0
Q ss_pred CCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhH
Q 008804 315 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADAT 393 (553)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 393 (553)
+.+.+..++...+++ +..+...+..+.....+..+..|.|.++++ .|.+. .+.+
T Consensus 223 ---------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~-~~~~ 277 (434)
T PRK15075 223 ---------------------RPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSA-ADSL 277 (434)
T ss_pred ---------------------ccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHH
Confidence 000000011112222 122111222222333445678889999876 57765 6778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhh
Q 008804 394 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLM 473 (553)
Q Consensus 394 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (553)
+......++.+++.++.|+++||+|||+.+..+.++..+......... . ............++.+.......+..+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (434)
T PRK15075 278 LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL-V-AAPSFARMLAVELWLSFLYGSYNGAMVVA 355 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-H-cCCchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888899999999999999999999988766544332221111111 1 11122112111111122222333444577
Q ss_pred hcccCCccchhhHHHHHHHHHH-HHHHHHHHHhHHhHHhhCch
Q 008804 474 VSEIFPLRTRGRGISLAVLTNF-GSNAIVTFAFSPLKELLGAE 515 (553)
Q Consensus 474 ~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g~~ 515 (553)
..|.+|++.|+++.|+.+.+.. +++.++|.+.|.+.|..|+.
T Consensus 356 ~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 356 LTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 8999999999999999755544 45788999999999998853
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=285.02 Aligned_cols=400 Identities=15% Similarity=0.103 Sum_probs=261.6
Q ss_pred HHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 008804 100 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 179 (553)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i 179 (553)
.++.......+...++...|.+. + .|++..+.|++.+.+.++++++++++|+++||+|||++++.+.++.++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~p~l~-~-------~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 34 IFFGYAAYYLVRKNFALAMPYLV-E-------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH-H-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence 33444444444444444455443 2 378999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc----hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHH-HHHHhhhcccCCCC
Q 008804 180 GALTTAYAP----GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGIL-LGYFVGSFQINAVG 254 (553)
Q Consensus 180 ~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~-~g~~l~~~l~~~~~ 254 (553)
+.+++++.+ +++.++++|++.|++.+...+.....+.|++|+++|++++++++.+..+|.. .+++++..+....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~- 184 (452)
T PRK11273 106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN- 184 (452)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 999888753 7889999999999999988888888899999999999999999999999864 4555443333333
Q ss_pred chHHHHhhhHHHHHHHHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhc
Q 008804 255 GWRYMYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSS 333 (553)
Q Consensus 255 ~wr~~f~~~~~~~~~~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (553)
+||+.|++.+++.++..+ ..+++||+|+.... +++.+ .++ ......+ .++
T Consensus 185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~-~~~---~~~~~~~----------------~~~ 235 (452)
T PRK11273 185 DWHAALYMPAFAAILVALFAFAMMRDTPQSCGL---------PPIEE-YKN---DYPDDYN----------------EKH 235 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC---------CChhh-hhh---ccccccc----------------ccc
Confidence 899999999888777544 44667887752100 00000 000 0000000 000
Q ss_pred ccccccccc-ceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 008804 334 YTDEKSEGS-FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAV 411 (553)
Q Consensus 334 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g 411 (553)
.++.+.+.. ...++|++.++...+...+..... +....|.|.++++ .+++. ..++.......++.+++.++.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~P~~l~~~~g~s~-~~~~~~~~~~~~~~~~g~~~~G 310 (452)
T PRK11273 236 EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCG 310 (452)
T ss_pred CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 112566776666555444444333 2466788999977 46665 6778888888899999999999
Q ss_pred Hhhccc--CCchhhHh-HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHH
Q 008804 412 AKVDDL--GRRPLLIG-GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 488 (553)
Q Consensus 412 ~l~d~~--g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 488 (553)
+++||+ +||+...+ ...+..++.+.+.. ....+.+...+ ..+..+....+.......+..|.+|++.||+++|
T Consensus 311 ~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 386 (452)
T PRK11273 311 WMSDKVFRGNRGATGVFFMTLVTIATIVYWL---NPAGNPTVDMA-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 386 (452)
T ss_pred HHHHHHccCCcchHHHHHHHHHHHHHHHHHH---hcccChHHHHH-HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHH
Confidence 999999 44443222 22222222222211 11112222222 2222222222222223345679999999999999
Q ss_pred HHHHHHHHHHHH-HHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCCCHHHH
Q 008804 489 LAVLTNFGSNAI-VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEI 547 (553)
Q Consensus 489 ~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (553)
+.+....+|+.+ +|.+.|.+.|..|+...|++.++++++++++...+.+. ++|+.||.
T Consensus 387 ~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 445 (452)
T PRK11273 387 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG-EKRHHEEL 445 (452)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHH
Confidence 999998888765 79999999999999999998888877776655544433 33334443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=288.37 Aligned_cols=385 Identities=19% Similarity=0.204 Sum_probs=274.7
Q ss_pred chhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 008804 109 YDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP 188 (553)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~ 188 (553)
++...++...|.+.++ +|.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++++++
T Consensus 8 ~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 8 LDRANLSFAAPMLQED-------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred HHHHhhhHhHHHHHHh-------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 3444555555655555 999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHH
Q 008804 189 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 268 (553)
Q Consensus 189 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~ 268 (553)
+++.++++|++.|++.+...+....++.|++|+++|++++++......+|..+++.+++.+.+.. +||+.|++.+++.+
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 159 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGVLGI 159 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888877 89999999988887
Q ss_pred HHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecc
Q 008804 269 LMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 347 (553)
Q Consensus 269 ~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (553)
+..+.. ++.+|+|+. .+... +++.....+..+.+ .+++.+++.+....++.+
T Consensus 160 ~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 212 (399)
T TIGR00893 160 IWGVLWLKFIPDPPQK---------AKWLT-EEEKYIVVGGLLAE-----------------QQGKGPSTPKKYQIKELL 212 (399)
T ss_pred HHHHHhhheecCCCCc---------cccCC-HHHHhhcchhhccc-----------------cccccccCCCccchHHHh
Confidence 766655 445655430 00000 00000000000000 000011122233456677
Q ss_pred cccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHh-
Q 008804 348 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG- 425 (553)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~- 425 (553)
+++.++...+..++.... ......+.|.++++ .+.+. .+.+.......++.+++.++.+++.||++||+....
T Consensus 213 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 287 (399)
T TIGR00893 213 KDRRVWGLALGQFLVNIG----LGFFLTWFPTYLVQERGLSI-LEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF 287 (399)
T ss_pred cCHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHhcccH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 777666555444333333 23466777887765 45554 778888889999999999999999999999862111
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 008804 426 GVCGIALSLLLLSAYYKILG-GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 504 (553)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 504 (553)
......++.+.......... .......... ...+++..+..+..+.+..|.+|++.|+++.|+.+.+..+|..++|.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i 366 (399)
T TIGR00893 288 ARKTAIIAGLVLSLLMFATNYVNIPYAALAL-VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIV 366 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHH-HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 11111111111111110001 1122222222 222333333567778999999999999999999999999999999999
Q ss_pred hHHhHHhhC-chhHHHHHHHHHHHHHHHHHH
Q 008804 505 FSPLKELLG-AENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 505 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 534 (553)
.|.+.+..| +...+.+.+++.+++.++.++
T Consensus 367 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 367 IGAIAATTGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred hhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999988 888888888777776665443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=276.29 Aligned_cols=344 Identities=19% Similarity=0.211 Sum_probs=254.1
Q ss_pred ccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 008804 116 GATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLV 195 (553)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 195 (553)
+.++.+.++ +|.++.+.|+..+++.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.+++
T Consensus 41 ~~l~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 113 (394)
T PRK10213 41 SLLTPMAQD-------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLI 113 (394)
T ss_pred hhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHH
Confidence 345555554 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-
Q 008804 196 GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM- 274 (553)
Q Consensus 196 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~- 274 (553)
+|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+.. +||+.|++.++++++..+..
T Consensus 114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~-gw~~~f~~~~~l~~~~~l~~~ 192 (394)
T PRK10213 114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI-GWRNVFNAAAVMGVLCIFWII 192 (394)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887 99999999887776655443
Q ss_pred cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhH
Q 008804 275 WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKA 354 (553)
Q Consensus 275 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (553)
..+||+|+. +++.....++.+++|.++.
T Consensus 193 ~~~p~~~~~----------------------------------------------------~~~~~~~~~~~l~~~~~~~ 220 (394)
T PRK10213 193 KSLPSLPGE----------------------------------------------------PSHQKQNTFRLLQRPGVMA 220 (394)
T ss_pred HHCCCCCcc----------------------------------------------------cccchhHHHHHhcCHHHHH
Confidence 335554320 0000011234566776666
Q ss_pred HHHHHHHHHHHHhhChhhHHHh-HHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHH
Q 008804 355 FIIGGGLVLFQQITGQPSVLYY-AGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 433 (553)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 433 (553)
..+...+...... ....+ .|.+.++.|++. ...+......+++.+++.++.+++.||.+ |+.+..+..+..+.
T Consensus 221 ~~~~~~~~~~~~~----~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~ 294 (394)
T PRK10213 221 GMIAIFMSFAGQF----AFFTYIRPVYMNLAGFGV-DGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVS 294 (394)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHH
Confidence 5443333333222 23334 477777778776 67888888899999999999999999954 44433333333333
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC
Q 008804 434 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 513 (553)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 513 (553)
.+.+.... .+.+.... ..++.+.......+...+.+.+..| +.++.+.++.....++|..+|+.+.|.+.|..|
T Consensus 295 ~~~l~~~~----~~~~~~~~-~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g 368 (394)
T PRK10213 295 ALVLTLWG----SDKIVATG-VAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG 368 (394)
T ss_pred HHHHHHHh----hhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 22222211 22333333 3333333333444445556777777 556777788888889999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHH
Q 008804 514 AENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~ 531 (553)
+...++..+++.++..++
T Consensus 369 ~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 369 LTSPLMLSGTLMLLTALL 386 (394)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 887777776665555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=286.34 Aligned_cols=354 Identities=17% Similarity=0.046 Sum_probs=264.9
Q ss_pred hccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHH
Q 008804 113 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~ 192 (553)
..++..|.+.++ +|++..+.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.++++++++++.
T Consensus 21 ~~~~~~~~~~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (377)
T TIGR00890 21 TWTLLAPPLGRY-------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAA 93 (377)
T ss_pred hhhhHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHH
Confidence 345556666655 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHH
Q 008804 193 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 272 (553)
Q Consensus 193 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i 272 (553)
++++|++.|++.+...+.....+.+++| ++|+++.++...+..+|..+++++.+.+.+.. +||+.|++.+++.++..+
T Consensus 94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~ 171 (377)
T TIGR00890 94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE-GVPAAFIYMGIIFLLVIV 171 (377)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888999987 57999999999999999988777766666666 899999999998888766
Q ss_pred Hhc-ccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccc
Q 008804 273 GMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 351 (553)
Q Consensus 273 ~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (553)
..+ +++++|+. ++. +++ + .+.+....++.++++.
T Consensus 172 ~~~~~~~~~~~~-------------~~~------------~~~-~-------------------~~~~~~~~~~~~~~~~ 206 (377)
T TIGR00890 172 LGAFLIGYPPGQ-------------LIK------------TNI-E-------------------VSVKDYTVWEMLRTPQ 206 (377)
T ss_pred HHHHheecCchh-------------ccc------------cCc-c-------------------cchhhhhHHHHHcCcc
Confidence 554 44443320 000 000 0 0000112334566666
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHH
Q 008804 352 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 431 (553)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 431 (553)
++...+......+.. .....+.+.+.++.+.+. .+.+.......++.++++++.+++.||++||+.+..+.++..
T Consensus 207 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 281 (377)
T TIGR00890 207 FWVLYLSFFLNAVSG----LLLIGLYKPYGQSLGLSD-GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISA 281 (377)
T ss_pred HHHHHHHHHHHhHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 665544333332222 123344555667777665 678888889999999999999999999999999888877777
Q ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh
Q 008804 432 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 511 (553)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 511 (553)
++.+.+.... ...........+..+.......+....+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+.
T Consensus 282 ~~~~~~~~~~----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 357 (377)
T TIGR00890 282 VGMAAMLFIP----MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE 357 (377)
T ss_pred HHHHHHHHcc----cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7666554321 111111212222223333333344557788999999999999999999999999999999999999
Q ss_pred hCchhHHHHHHHHHHHHH
Q 008804 512 LGAENIFLLFAAIAFLAV 529 (553)
Q Consensus 512 ~g~~~~~~~~~~~~~~~~ 529 (553)
.|+...|.+.+++.+++.
T Consensus 358 ~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 358 IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hchhhHHHHHHHHHHHhc
Confidence 999998888877766543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=272.88 Aligned_cols=362 Identities=15% Similarity=0.124 Sum_probs=258.7
Q ss_pred hhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc---
Q 008804 111 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA--- 187 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~--- 187 (553)
....++..+.+.+.+ +|+|.+|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++++++
T Consensus 50 w~~~~~l~~~~~~~~------~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~ 123 (462)
T PRK15034 50 WMLFSAVTVNLNKIG------FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN 123 (462)
T ss_pred HHHHHHHHHHhhhhh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344444555554421 99999999999999999999999999999999999999999999999999999987
Q ss_pred --chHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhccc-----CC--------
Q 008804 188 --PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-----NA-------- 252 (553)
Q Consensus 188 --~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~-----~~-------- 252 (553)
++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...++ ..
T Consensus 124 ~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~ 202 (462)
T PRK15034 124 PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQ 202 (462)
T ss_pred cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 8999999999999998 7789999999999999999999999997777777766655554322 10
Q ss_pred ----CCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHH
Q 008804 253 ----VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 328 (553)
Q Consensus 253 ----~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (553)
..+||.++++.+++.++..++.+++.++++
T Consensus 203 ~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~---------------------------------------------- 236 (462)
T PRK15034 203 ADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA---------------------------------------------- 236 (462)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------------------------------------------
Confidence 115899888888888877766654433221
Q ss_pred HhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHH
Q 008804 329 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTW 408 (553)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (553)
+.+.+.....+.+|+|..|...+.. ++.+..+..+.++.|++.++ .++. ...........+...+.++
T Consensus 237 ------~~~~~~~~~~~vlk~~~~Wllslly----~~tFG~fvg~s~~lp~~~~~-~~~~-~~~l~~~~l~~l~~~l~rp 304 (462)
T PRK15034 237 ------SSRASIADQLPVLQRLHLWLLSLLY----LATFGSFIGFSAGFAMLAKT-QFPD-VNILRLAFFGPFIGAIARS 304 (462)
T ss_pred ------ccccCHHHHHHHhCCCchhHHHHHH----HHHHHHHHHHHHHHHHHHHH-HcCh-HHHHHHHHHHHHHHHHHHH
Confidence 0001112244578888877766444 33444444577788888866 3333 2333334455678889999
Q ss_pred HHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHH-HHHHhcCcccchhhhhcccCCc-------
Q 008804 409 IAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLY-VGCYQISFGPISWLMVSEIFPL------- 480 (553)
Q Consensus 409 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~------- 480 (553)
++|+++||+|+++++.++++...++...+..........+.......++. ..+.+.+ +...+-++.+.+|+
T Consensus 305 lgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~g-ngsvfk~ip~~f~~~~~~~~~ 383 (462)
T PRK15034 305 VGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLG-SGSTFQMIAVIFRQITIYRVK 383 (462)
T ss_pred hhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-chHHHHhhHHHHhhhhhhccc
Confidence 99999999999999998887777766444333211111222222222222 2222223 22334566666663
Q ss_pred --------------cchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC-chhHHHHHHHHHHHHHHHHHHhccc
Q 008804 481 --------------RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 481 --------------~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
++.|.+.|+....+.+|+++.|.++|...+..| +...|+.+.+..+++.++.+..+.+
T Consensus 384 ~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 384 MKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred ccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 157889999999999999999999999998877 6777888888888888877765543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=275.66 Aligned_cols=367 Identities=16% Similarity=0.164 Sum_probs=263.6
Q ss_pred HHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 008804 100 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 179 (553)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i 179 (553)
.++..+..+.......+.++.+.++ +|.+..+.|++.+.+.+++.++++++|+++||+|||+++..+.++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAHD-------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI 80 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHHH-------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 3445566666766777777777766 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHH
Q 008804 180 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259 (553)
Q Consensus 180 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~ 259 (553)
+.++++++++++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++++++.+.+.. +||+.
T Consensus 81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~~ 159 (382)
T PRK10091 81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRYT 159 (382)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHHH
Confidence 99999999999999999999999999988888999999999999999999999999999999999999988777 99999
Q ss_pred HhhhHHHHHHHHHH-hcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccc
Q 008804 260 YGLSAPLALLMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 338 (553)
Q Consensus 260 f~~~~~~~~~~~i~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (553)
|++.+++.++..+. .+++||.++ +.+ .+ . .
T Consensus 160 f~~~~~~~~~~~~~~~~~lp~~~~-------------~~~----------------~~---~---~-------------- 190 (382)
T PRK10091 160 FLLIAVFNIAVLASIYFWVPDIRD-------------EAK----------------GG---L---R-------------- 190 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCc-------------ccc----------------cC---H---H--------------
Confidence 99999887776553 345666431 000 00 0 0
Q ss_pred ccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008804 339 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 417 (553)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 417 (553)
...+.++++..+...+...+... +......+.+.++. ..|.+. .+.+.......++.+++.++.+++.||+
T Consensus 191 ---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~~r~ 262 (382)
T PRK10091 191 ---EQFHFLRSPAPWLIFAATMFGNA----GVFAWFSYIKPYMMFISGFSE-TSMTFIMMLVGLGMVLGNLLSGRLSGRY 262 (382)
T ss_pred ---HHHHHhcChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHhHHHheecccc
Confidence 00112344444433322222111 11123334444554 467766 7888999999999999999999999999
Q ss_pred CCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHH
Q 008804 418 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 497 (553)
Q Consensus 418 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 497 (553)
++|+.+..+..+.+++.+++.... +..+...+..++...+......+.......+..|++.++.+ ..+....+|
T Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g 336 (382)
T PRK10091 263 SPLRIAAVTDFIIVLALLMLFFFG----GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLG 336 (382)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHH
Confidence 999998888777766665443221 12222222222222222222222332344455555555544 346678999
Q ss_pred HHHHHHHhHHhHHh-hCchhHHHHHHHHHHHHHHHHHHhcc
Q 008804 498 NAIVTFAFSPLKEL-LGAENIFLLFAAIAFLAVLFIVRTVP 537 (553)
Q Consensus 498 ~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 537 (553)
.++||.+.|.+.|. .++...+.+.+++.++.......+.+
T Consensus 337 ~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 337 SAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred HHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999996 57888888777666665554444443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=279.41 Aligned_cols=357 Identities=22% Similarity=0.168 Sum_probs=255.9
Q ss_pred HHhhhchhhhcccccccc-CCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 008804 104 GLLFGYDIGATSGATISL-QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGAL 182 (553)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~ 182 (553)
.+......+...+.++.. .++ +|.|+.++|++.+++.+++.+++++.|+++||+|||++++.+.++++++.+
T Consensus 24 ~~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 96 (399)
T PRK05122 24 TFISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL 96 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence 344444455555556643 333 899999999999999999999999999999999999999999999988877
Q ss_pred HHHhc--------chHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCC
Q 008804 183 TTAYA--------PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG 254 (553)
Q Consensus 183 ~~~~~--------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~ 254 (553)
+++++ .+++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..+|+.+++.+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~- 175 (399)
T PRK05122 97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG- 175 (399)
T ss_pred HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc-
Confidence 66553 257789999999999999999999999999999999999999999999999999999999988877
Q ss_pred chHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcc
Q 008804 255 GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSY 334 (553)
Q Consensus 255 ~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (553)
+||+.+++.+++.++..+.....|+++. + ++
T Consensus 176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~------------------------------------- 206 (399)
T PRK05122 176 GLAGLGLLIMLLALLGLLLARPRPAVPP---------V---KG------------------------------------- 206 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCC---------C---Cc-------------------------------------
Confidence 9999998877766554443332332211 0 00
Q ss_pred ccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 008804 335 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKV 414 (553)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 414 (553)
++.++++.+++ .+.......+..+. +.....+.+.++.+.+.+ ..+.......++.+++.++.+++.
T Consensus 207 ----~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~ 273 (399)
T PRK05122 207 ----ERLPFRRVLGR--VWPYGMGLALASIG----FGTIATFITLYYAARGWD---GAALALTLFGVAFVGARLLFGNLI 273 (399)
T ss_pred ----cchhHHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccc---cchHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111 11111111111111 223455667677666552 345666777888899999999999
Q ss_pred cccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHH
Q 008804 415 DDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN 494 (553)
Q Consensus 415 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 494 (553)
||+++|+.+..+..+.+++...+... .+.+..++. .++.+.+.....+.......|..|++.|+++.|+.+...
T Consensus 274 ~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 347 (399)
T PRK05122 274 NRLGGLRVAIVSLLVEILGLLLLWLA-----PSPWMALIG-AALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFL 347 (399)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHH-HHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999998888777766666555431 223333222 233333333333444456678889999999999999999
Q ss_pred HHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhc
Q 008804 495 FGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV 536 (553)
Q Consensus 495 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 536 (553)
.+|..+++.+.|.+.+..|++..+++.+++.+++.++.+++.
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY 389 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988888777766555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=284.24 Aligned_cols=398 Identities=15% Similarity=0.130 Sum_probs=272.2
Q ss_pred HHHHHHHHHhhhchhhhccccccccCCCCCCC---------------cccccCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008804 97 FLFPALGGLLFGYDIGATSGATISLQSPELSG---------------TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIA 161 (553)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~ 161 (553)
..++.++......|...++...+.+.++.... +.+++++..+.|++.+.+.+++.+++++.|+++
T Consensus 21 ~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~ 100 (465)
T TIGR00894 21 SFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLA 100 (465)
T ss_pred HHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchHHHH
Confidence 33444555556667777777777665421111 002899999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHH
Q 008804 162 DFLGRKRELIIAAVLYALGALTTAYA--PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGI 239 (553)
Q Consensus 162 dr~Grk~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 239 (553)
||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.
T Consensus 101 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 180 (465)
T TIGR00894 101 GKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGT 180 (465)
T ss_pred HHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887554 5688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcc-cCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCch
Q 008804 240 LLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKL 318 (553)
Q Consensus 240 ~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (553)
++++++++.+.+...+||+.|++.++++++..+++++ .+|+|+.. .+ .+ +++.+. .+.
T Consensus 181 ~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--------~~-~~-~~~~~~-i~~---------- 239 (465)
T TIGR00894 181 FIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--------PC-IS-KFEKKY-INS---------- 239 (465)
T ss_pred HHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--------CC-CC-HHHHHH-HHh----------
Confidence 9999999998876238999999999988887766544 55655310 00 00 000000 000
Q ss_pred hHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHH
Q 008804 319 SERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSV 397 (553)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 397 (553)
..+++.++.+.+.+++++++++.++...+..+.. ....+.+..|+|.++++ .+.+. .+.++...
T Consensus 240 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lp~~l~~~~g~s~-~~~g~~~~ 304 (465)
T TIGR00894 240 ----------SLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGH----FWLYTILPTYLPTFISWVLRVSG-KENGLLSS 304 (465)
T ss_pred ----------hcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCcCh-HHhHHHHH
Confidence 0000001111234577788887776655443333 33334577899988866 56665 78889988
Q ss_pred HHHHHHHHHHHHHHHhhcccCCchhhH--------hHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccc
Q 008804 398 VIGVFKLVMTWIAVAKVDDLGRRPLLI--------GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 469 (553)
Q Consensus 398 ~~~~~~~~~~~~~g~l~d~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (553)
...++.+++.++.|+++||+++|+... .+..+...+...+.. ..........+.... ..+.......+.
T Consensus 305 ~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 381 (465)
T TIGR00894 305 LPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYAL--PYLSAAFYLTIIILT-LANAVSSGPLAG 381 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHcCCchHHHHHHHH-HHHHHhhhhhhh
Confidence 999999999999999999976543211 111111111111111 111122222222222 222222222333
Q ss_pred hhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh--C-chhHHHHHHHHHHHHHHHHHH
Q 008804 470 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL--G-AENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 470 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g-~~~~~~~~~~~~~~~~~~~~~ 534 (553)
......|..| +.+|.+.|+.++.+.+++.++|.+.|.+.+.. + |...|.+.+++.+++.++..+
T Consensus 382 ~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 382 VLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 3345557666 58999999999999999999999999987653 3 667788887777777665443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=274.11 Aligned_cols=365 Identities=15% Similarity=0.146 Sum_probs=267.8
Q ss_pred HHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 008804 100 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 179 (553)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i 179 (553)
..++.++.+.+...++..++.+.++ +|+|..+.+++.+.+.+++.++.++.|++.||+|||++++.+.++.++
T Consensus 12 ~~~~~~~~~~~~~~~g~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 12 SFLSYALTGALVIVTGMVMGPIAEY-------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455677777777788888887766 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHH
Q 008804 180 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259 (553)
Q Consensus 180 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~ 259 (553)
+.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+.....+||+.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~ 164 (394)
T PRK03699 85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV 164 (394)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988776543499999
Q ss_pred HhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccc
Q 008804 260 YGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKS 339 (553)
Q Consensus 260 f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (553)
|++.+++.++..++.++. +.|+. +++ + ++ + +++.
T Consensus 165 f~~~~~~~~~~~~~~~~~-~~p~~------------~~~-~------------~~------------------~-~~~~- 198 (394)
T PRK03699 165 YACIGLVYVAIFILTLFS-EFPAL------------GKH-A------------PK------------------A-DKPV- 198 (394)
T ss_pred HHHHHHHHHHHHHHHHhc-CCccc------------ccc-C------------cc------------------c-cCcc-
Confidence 999888877765544332 22210 000 0 00 0 0000
Q ss_pred cccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 008804 340 EGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 418 (553)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 418 (553)
.+..+ ++.++...+..++ .......+..|.|.++++ .+.+. .+++.+.....++..+++++.+++.||++
T Consensus 199 ---~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~ 269 (394)
T PRK03699 199 ---AKEKW-GIGVLFLAIAALL----YILAQLTFISWVPEYAQKKFGMSL-EDAGNLVSNFWMAYMVGMWIFSFIVRFFD 269 (394)
T ss_pred ---ccccC-ChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCh-HHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00111 2222322222222 222233567889999855 57765 78888888999999999999999999999
Q ss_pred CchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHH
Q 008804 419 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 498 (553)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 498 (553)
+|+.+.....+..+...++.. ..+...... ..+..++......+...++..+..| +.++...|.......+|.
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~ 342 (394)
T PRK03699 270 LQRILTVLAGLALVLMYLFVN-----TDDPSHLLY-AILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGT 342 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-----cCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHH
Confidence 999887766555554333321 122222222 2333333333344454456667665 456778888888999999
Q ss_pred HHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHH
Q 008804 499 AIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV 533 (553)
Q Consensus 499 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 533 (553)
.++|.+.|.+.+..|++..+++.+++.+++.+...
T Consensus 343 ~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 343 MLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 99999999999999998888888777776655433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=284.54 Aligned_cols=375 Identities=16% Similarity=0.108 Sum_probs=281.5
Q ss_pred hhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-----
Q 008804 112 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY----- 186 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~----- 186 (553)
......+|...++ ++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.++
T Consensus 34 ~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T PRK10489 34 GLLGVAVPVQIQM-------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP 106 (417)
T ss_pred HHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC
Confidence 3334445555444 7789999999999999999999999999999999999999988888877766542
Q ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHH
Q 008804 187 APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 266 (553)
Q Consensus 187 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~ 266 (553)
.++++.+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..+|+.+++.+.+.. +|++.|++.++.
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~~~~~~~~~ 185 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAWNYGLAAAG 185 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence 5688999999999999999888999999999999999999999999999999999999999988776 899999998888
Q ss_pred HHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceec
Q 008804 267 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEV 346 (553)
Q Consensus 267 ~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (553)
.++..++.+.+|++++.. + ++ .+ ...+ ....++.+
T Consensus 186 ~~~~~~~~~~l~~~~~~~-------~----~~----------------~~--~~~~----------------~~~~~~~~ 220 (417)
T PRK10489 186 TFITLLPLLRLPALPPPP-------Q----PR----------------EH--PLRS----------------LLAGFRFL 220 (417)
T ss_pred HHHHHHHHHhCCCCCCCC-------c----cc----------------cc--chHH----------------HHHHHHHH
Confidence 777777667777654200 0 00 00 0000 00112345
Q ss_pred ccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHh
Q 008804 347 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIG 425 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 425 (553)
++++.++...+...+..+ ......+.|.+.++ .+.+. ...+.+.....++.+++.++.+++.||.++++.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~ 294 (417)
T PRK10489 221 LASPVVGGIALLGGLLTM-----ASAVRVLYPALADEVWQMGA-AQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLL 294 (417)
T ss_pred HcChHHHHHHHHHHHHHH-----HHhHHHhhHHHHHhccCCCh-hHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHH
Confidence 566655544433222211 12355677888877 66665 788888889999999999999999999877777777
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 008804 426 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 505 (553)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 505 (553)
+.++.+++.+++.. ...+.......+..+.......+...+++.|..|++.||+++|+.+....+|..+++.+.
T Consensus 295 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 295 STLGSFLAVGLFGL------MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred HHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 76666665554432 122222223333333333333445567889999999999999999999999999999999
Q ss_pred HHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHhhh
Q 008804 506 SPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIESKI 551 (553)
Q Consensus 506 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (553)
|.+.+..|+...++..+++.++.+++.+...+++|+++++|.+++-
T Consensus 369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 369 GGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 9999999988888888888877777777888898888888887664
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=284.01 Aligned_cols=406 Identities=17% Similarity=0.213 Sum_probs=274.9
Q ss_pred HHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 008804 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 176 (553)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~ 176 (553)
+..+.++.++.+++....+..++.+.++ +|++..+.+++.+.+.+++.++.++.|+++||+|||++++.+.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 22 FSAAWLGYLLDGFDFVLITLVLTEVQGE-------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3445566677777887877777777766 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCch
Q 008804 177 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW 256 (553)
Q Consensus 177 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~w 256 (553)
.+++.++++++++++.++++|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+.. +|
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~w 173 (496)
T PRK03893 95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW-GW 173 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877 99
Q ss_pred HHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHH-HHhhhccc
Q 008804 257 RYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL-VSLKSSYT 335 (553)
Q Consensus 257 r~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 335 (553)
|+.|++.++..++.++....+||++++...++.+. +..+..+.....+. ... ........ ........
T Consensus 174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 242 (496)
T PRK03893 174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKA---------PVRTMVDILYRGEH-RII-NILLTLAAAAALWFCFA 242 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccc---------cchhHHHHHhcchh-HHH-HHHHHHHHHHHHHHHHH
Confidence 99999866555555445556777765422110000 00000000000000 000 00000000 00000000
Q ss_pred cccccccce-------------e--cccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHHH
Q 008804 336 DEKSEGSFL-------------E--VFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVI 399 (553)
Q Consensus 336 ~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 399 (553)
.. ....+. . ....+..+..........+..+........+.|.+++ +.|.+. .+.+.+....
T Consensus 243 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~-~~~g~~~~~~ 320 (496)
T PRK03893 243 GN-LQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDP-HTVANVLFFS 320 (496)
T ss_pred hh-hcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCH-HHHHHHHHHH
Confidence 00 000000 0 0000001111111111122222222235567888885 667776 7889999999
Q ss_pred HHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCC
Q 008804 400 GVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP 479 (553)
Q Consensus 400 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 479 (553)
.++.+++.++.|++.||+++|+.+..+..+..+..+.+... ............+..++.+.+..+....++.|.+|
T Consensus 321 ~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (496)
T PRK03893 321 GFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI----GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFD 396 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc----cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCC
Confidence 99999999999999999999998887765555444333221 12222222222233233333444555678889999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHH
Q 008804 480 LRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFL 527 (553)
Q Consensus 480 ~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 527 (553)
++.|++++|+.+....+|+.++|.+.|.+.+..|+...+...++.+.+
T Consensus 397 ~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 397 TEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred HHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988777655544433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=268.29 Aligned_cols=355 Identities=16% Similarity=0.147 Sum_probs=263.1
Q ss_pred HHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 008804 100 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 179 (553)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i 179 (553)
+.++.++.+...+..++.+|.+.++ +|.|..++|++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~lp~~~~~-------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 11 LLCGLLLLTLAIAVLNTLVPLWLAQ-------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888876 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHH
Q 008804 180 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259 (553)
Q Consensus 180 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~ 259 (553)
+.++++++++++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++.+.+.. .|...
T Consensus 84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~ 162 (381)
T PRK03633 84 GCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL-MSVLP 162 (381)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cchHH
Confidence 99999999999999999999999999998888888889999999999999999999999999999999977653 33333
Q ss_pred HhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccc
Q 008804 260 YGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 338 (553)
Q Consensus 260 f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (553)
+ ..+.......... ...+|++. +++
T Consensus 163 ~-~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------~~~ 188 (381)
T PRK03633 163 W-VTGLVLAAILPLLFTRILNQQA-----------------------------------------------------ENH 188 (381)
T ss_pred H-HHHHHHHHHHHHHHhcccCCCC-----------------------------------------------------CCC
Confidence 2 2222222111111 11111100 000
Q ss_pred ccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 008804 339 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 418 (553)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 418 (553)
+..+.++.++++.++..........+.. .....+.|.++++.+.+. ...+.......++.+++++..+++.||++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lp~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~~ 263 (381)
T PRK03633 189 DSTSIWPMLKLRQARLGVNGCIISGIVL----GSLYGLMPLYLNHQGMSD-ASIGFWMALLVSAGILGQWPIGRLADRFG 263 (381)
T ss_pred CCCCHHHHHHhcchHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHcC
Confidence 0112344566666554332222222221 234567888888877776 67788888888999999999999999999
Q ss_pred CchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHH
Q 008804 419 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 498 (553)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 498 (553)
+|+.+..+..+..++.+.+.. . .. .... ....+.......|...+...|..|+++++...+..+...++|.
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~~------~-~~-~~~~-~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 264 RLLVLRVQVFVVILGSIAMLS------Q-AA-MAPA-LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGS 334 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHhh------h-HH-HHHH-HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 999888777666665543321 1 11 1111 1222222334456666778898888888888888888899999
Q ss_pred HHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 499 AIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 499 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
.++|.+.|.+.|+.|+...|.+.+++.++..+
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99999999999999998888888777765554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=271.25 Aligned_cols=351 Identities=17% Similarity=0.141 Sum_probs=250.0
Q ss_pred hhhhccccccc-cCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---
Q 008804 110 DIGATSGATIS-LQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA--- 185 (553)
Q Consensus 110 ~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~--- 185 (553)
..+...+.++. +.++ +|.|..++|++.+++.+++.++++++|+++||+|||++++.+.++..++.+.+.
T Consensus 30 ~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~ 102 (392)
T PRK12382 30 TVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAA 102 (392)
T ss_pred HHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhh
Confidence 34454555553 2334 899999999999999999999999999999999999999999888777654332
Q ss_pred h-----cchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHH
Q 008804 186 Y-----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 260 (553)
Q Consensus 186 ~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f 260 (553)
+ .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++.+.+.. |||+.+
T Consensus 103 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~~ 181 (392)
T PRK12382 103 ILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF-GFAALA 181 (392)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHH
Confidence 2 3588999999999999999999999999999999999999999999999999999999999988777 899987
Q ss_pred hhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccccc
Q 008804 261 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 340 (553)
Q Consensus 261 ~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (553)
++..+..++..+.....||.+. + + + ++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~-------------~-----------------~-~----------------------~~ 208 (392)
T PRK12382 182 LTTMVLPLLAWAFNGTVRKVPA-------------H-----------------A-G----------------------ER 208 (392)
T ss_pred HHHHHHHHHHHHHHHhccCCCC-------------C-----------------c-c----------------------cC
Confidence 7665554443332222232211 0 0 0 00
Q ss_pred ccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 008804 341 GSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR 420 (553)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 420 (553)
.+.++.++ .++...+...+..+ .......+.+.++++.+.+ ..+.......++.+++.++.|++.||+++|
T Consensus 209 ~~~~~~~~--~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~ 279 (392)
T PRK12382 209 PSLWSVVG--LIWKPGLGLALQGV----GFAVIGTFVSLYFASKGWA---MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV 279 (392)
T ss_pred chHHHHHH--HHHHhHHHHHHHHH----HHhHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 00111111 01111111111111 1223556667777776654 345556667778889999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHH
Q 008804 421 PLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 500 (553)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 500 (553)
+.+..+..+..++.+++... .+.+..... .+..+.......+.......+.+|+++|+++.|+.+....+|..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 280 KVAIVSLLVETVGLLLLWLA-----PTAWVALAG-AALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV 353 (392)
T ss_pred eehHHHHHHHHHHHHHHHHc-----ccHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877777766554431 222322222 223333323334445567788889999999999999999999999
Q ss_pred HHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhc
Q 008804 501 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV 536 (553)
Q Consensus 501 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 536 (553)
+|.+.|.+.+..|++..|.+.+++.+++.++.+.+.
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999888877777655443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=272.85 Aligned_cols=388 Identities=17% Similarity=0.096 Sum_probs=276.7
Q ss_pred hhhhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 008804 90 WSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRE 169 (553)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~ 169 (553)
.++.++..+.+.+..+...+....+.+.++.+.++ +|.+..+.++..+.+.+++.++.++.|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~ 80 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVED-------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV 80 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 34556666667777777777777777777776665 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcc
Q 008804 170 LIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 249 (553)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l 249 (553)
+..+.++.+++.+++.++++++.+++.|+++|++.+...+...+++.|++|+++|.+++++......+|..++|.+++.+
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 81 MLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999988899999999999998
Q ss_pred cCCCCchHHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHH
Q 008804 250 INAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 328 (553)
Q Consensus 250 ~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (553)
.+.. +||+.|++.+++.++..+.. +..||+++.. +++ ....+
T Consensus 161 ~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~------------------~~~~~------ 203 (406)
T PRK15402 161 IHVL-PWRGMFVLFAALAALSFFGLWRAMPETAGRV------------GEK------------------LSLKE------ 203 (406)
T ss_pred HHcc-CccHHHHHHHHHHHHHHHHHHHhCCCCCccc------------ccc------------------ccHHH------
Confidence 8776 99999999888887766644 4456654200 000 00000
Q ss_pred HhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHH
Q 008804 329 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMT 407 (553)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (553)
...+++.+++++.++...+...+...... ....+.|.++. ..+.+. .+.+.......++.+++.
T Consensus 204 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~~~~~g~ 268 (406)
T PRK15402 204 ----------LGRDYKLVLKNRRFVAGALALGLVSLPLL----AWIALSPVILISGEQLSS-YEYGLLQVPVFGALIAGN 268 (406)
T ss_pred ----------HHHHHHHHHcCcHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHH
Confidence 01123456777776655544433332221 24445666654 456665 677777777778889999
Q ss_pred HHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHH
Q 008804 408 WIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 487 (553)
Q Consensus 408 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 487 (553)
++.+++.||+++|+.+..+.++..++..++...........++.. ...+..+.......+......... +++++|++.
T Consensus 269 ~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~ 346 (406)
T PRK15402 269 LTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLT-AGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVS 346 (406)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH-HHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHH
Confidence 999999999999999888877776666665543211112222222 222222222222233333333333 448899999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhccc
Q 008804 488 SLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 488 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
++.++...++..+|+.+.+.+.+..+.........+..++..++...+.++
T Consensus 347 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK15402 347 AAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLKD 397 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999888775444333333333333333333333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=280.27 Aligned_cols=393 Identities=21% Similarity=0.227 Sum_probs=292.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
++.+.....+..+++++|.++|++++|+++||+|||++++.++++..++.++.++++|++.+++.|++.|++.++.....
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccC
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG 291 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~ 291 (553)
..++.|++++++|+.+..+ ......+..+++++++++.. +||+.+++..+++++.++.+++.||+|+|+..+
T Consensus 193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~---- 264 (521)
T KOG0255|consen 193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK---- 264 (521)
T ss_pred HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc----
Confidence 9999999999999999999 77777777777777777665 799999999999999888877788999999974
Q ss_pred CCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChh
Q 008804 292 KGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 371 (553)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (553)
++.+++.+.+++..+.+.................+.......++..+.++++.++++...+...+.++.....++
T Consensus 265 -----g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~ 339 (521)
T KOG0255|consen 265 -----GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYY 339 (521)
T ss_pred -----CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHH
Confidence 556777777777665442222222222211111111112223335588899988766666555555543322222
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCch-HH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP-LV 450 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 450 (553)
... ......| .+........+.....+....+...|++|||.....+..+..++++...+... ... +.
T Consensus 340 gl~----~~~~~lg----~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 408 (521)
T KOG0255|consen 340 GLS----LNVSGLG----GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD---DLGGWL 408 (521)
T ss_pred hhh----hhhhhcC----chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc---cchhHH
Confidence 221 1122222 24455555555677888888889999999999999999999988888877543 111 23
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 451 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
..+...+..++...++... +.+..|++|+..|..+.+.......++++++|.+...... ......+.+++.+..+.++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 486 (521)
T KOG0255|consen 409 HWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGL 486 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHH
Confidence 3344444444444444444 7899999999999999999999999999999987755544 3333444446677777777
Q ss_pred HHHHhcccCCCCCHHHHHhh
Q 008804 531 FIVRTVPETKGLSLEEIESK 550 (553)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~ 550 (553)
+..+++||++++.+.+..++
T Consensus 487 ~~~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 487 LSLLLLPETKGKPLPGTLLD 506 (521)
T ss_pred HHHhcCcccCCCCCchhHHH
Confidence 77788999999887655443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=274.61 Aligned_cols=392 Identities=19% Similarity=0.188 Sum_probs=274.1
Q ss_pred HHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 008804 100 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 179 (553)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i 179 (553)
++++.++..++...+++.+|.+.++ +|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTALPSMAQS-------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3445566677777777778877766 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHH
Q 008804 180 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259 (553)
Q Consensus 180 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~ 259 (553)
+.++++++++++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.+++.+.+.. +||+.
T Consensus 88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~~ 166 (471)
T PRK10504 88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWI 166 (471)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877 99999
Q ss_pred HhhhHHHHHHHHHHhc-ccCCchhHHHHhhccCCCchhhhHHHHHHHHH-h--HhcCCCCCchhHHHHHHH--------H
Q 008804 260 YGLSAPLALLMGIGMW-SLPPSPRWLLLRAVQGKGSLQEYKEQAISALG-K--LRRRPPGDKLSERQIEDT--------L 327 (553)
Q Consensus 260 f~~~~~~~~~~~i~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~--------~ 327 (553)
|++..+..++..+... ..|+.+. ...+.+............. . ..+...... ........ .
T Consensus 167 f~~~~~~~~l~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 239 (471)
T PRK10504 167 FLINIPVGIIGAIATLMLMPNYTM------QTRRFDLSGFLLLAVGMATLTLALDGSKGLGL-SPLAIAGLVAVGVVALL 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc------cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCc-chHHHHHHHHHHHHHHH
Confidence 9998887777665543 3444321 0001110000000000000 0 011111001 00000000 0
Q ss_pred HHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHH
Q 008804 328 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVM 406 (553)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 406 (553)
....++...+++..+ .+++|++.++..++..++..+.. .....+.|++++. .|.+. ...++......++.+++
T Consensus 240 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~ 313 (471)
T PRK10504 240 LYLLHARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGS----GMLPFMTPVFLQIGLGFSP-FHAGLMMIPMVLGSMGM 313 (471)
T ss_pred HHHHHHhcCCCCccC-HHHhcccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHH
Confidence 000000011111112 24788888776655444444332 2456677888875 56665 78888888888888889
Q ss_pred HHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhH
Q 008804 407 TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRG 486 (553)
Q Consensus 407 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 486 (553)
.++.+++.||+|+|+.+..+..+.++...++.... ............+..+.......+.......+..|++.++.+
T Consensus 314 ~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 390 (471)
T PRK10504 314 KRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA---LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSG 390 (471)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccch
Confidence 99999999999999999888877777655554321 112222222222222222222333445777788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhhCch
Q 008804 487 ISLAVLTNFGSNAIVTFAFSPLKELLGAE 515 (553)
Q Consensus 487 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 515 (553)
+|+.++...+|..+++.+.|.+.+..|+.
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999887753
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=275.85 Aligned_cols=363 Identities=13% Similarity=0.103 Sum_probs=239.7
Q ss_pred hhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHH
Q 008804 112 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 191 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~ 191 (553)
....+..+.+.++ +|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++
T Consensus 53 ~~~~~~~~~l~~~-------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~ 125 (476)
T PLN00028 53 FAAAPLLPIIRDN-------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSAT 125 (476)
T ss_pred HHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3445556666655 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhccc----CC----CCchHHHHhhh
Q 008804 192 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI----NA----VGGWRYMYGLS 263 (553)
Q Consensus 192 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~----~~----~~~wr~~f~~~ 263 (553)
.++++|++.|++.+... ....++.|++|+++|++++++......+|..+++.+.+.+. +. ..|||+.|++.
T Consensus 126 ~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~ 204 (476)
T PLN00028 126 GFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP 204 (476)
T ss_pred HHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 99999999999988654 45678899999999999999998777777777766554432 11 12899999999
Q ss_pred HHHHHHHHHHhcccCC-chhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccccccc
Q 008804 264 APLALLMGIGMWSLPP-SPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS 342 (553)
Q Consensus 264 ~~~~~~~~i~~~~~~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (553)
++++++..++.+++++ .|+ ++.++.. ++.+ .++.+....
T Consensus 205 g~l~l~~~l~~~~~~~~~p~--------------~~~~~~~-------~~~~-------------------~~~~~~~~~ 244 (476)
T PLN00028 205 GLLHIIMGILVLTLGQDLPD--------------GNYRELK-------KSGT-------------------MPKDSFSKV 244 (476)
T ss_pred HHHHHHHHHHHHHHcCcCCC--------------CchhhHH-------hcCc-------------------cccccHHHH
Confidence 9988877766655543 231 0000000 0000 000000112
Q ss_pred ceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCch
Q 008804 343 FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 421 (553)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 421 (553)
+++.+++++.+...+..+...... ..+..+.|.++.+ .|.+. ..++.+.....++.++++++.|+++||++||+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~l~~~~g~s~-~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~ 319 (476)
T PLN00028 245 LRYGVTNYRTWILALTYGYSFGVE----LTMDNIIAEYFYDRFGLSL-ETAGAIAASFGLMNLFARPAGGYLSDVAARRF 319 (476)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHH----HHHHhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 345566666665544332222222 2345567777654 57776 78889999999999999999999999998652
Q ss_pred -------hhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHH
Q 008804 422 -------LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN 494 (553)
Q Consensus 422 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 494 (553)
......++.++..+++.. ..+........+++..+.. ...+..+.+..+..| +.+|++.|+.+..+
T Consensus 320 ~~~~r~~~~~~~~~l~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g 392 (476)
T PLN00028 320 GMRGRLWALWIVQTLGGVFCIWLGR-----ANSLGAAIVVMILFSIFVQ-AACGATFGIVPFVSR-RSLGVISGLTGAGG 392 (476)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHH-HhhhhhcccCcccCh-hhchhhhhhhhccc
Confidence 111122222221221111 1122222222222222221 122234455666644 78999999998877
Q ss_pred HHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHh
Q 008804 495 FGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT 535 (553)
Q Consensus 495 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 535 (553)
.+|++++|.+.+ ..+..+|...|++.+++.++++++.++.
T Consensus 393 ~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 393 NVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred cHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 777777776654 2223357888988888887777665543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=274.45 Aligned_cols=375 Identities=16% Similarity=0.144 Sum_probs=256.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA----PGLGVLLVGRLLYGLGIGLA 207 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~ 207 (553)
+|++.++.+++.+++.++..++.++.|+++||+|||++++.+.++.+++.+++++. ++++.+++.|++.|++.+..
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~ 135 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG 135 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence 68899999999999999999999999999999999999999999999999888764 46788889999999999999
Q ss_pred hhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHH-HhcccCCchhHHHH
Q 008804 208 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPSPRWLLL 286 (553)
Q Consensus 208 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i-~~~~~~e~p~~~~~ 286 (553)
.+.....+.|++|+++|++++++.+.+..+|..+++.+.+.......+||+.|++.++++++..+ ..+++||+|+....
T Consensus 136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 215 (438)
T TIGR00712 136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL 215 (438)
T ss_pred hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence 99899999999999999999999999999999999887765444333899999999988877654 44667877652100
Q ss_pred hhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHH
Q 008804 287 RAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQ 366 (553)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (553)
+ +. ++ .+.+...+.. ++ .+. +.+.++...+.++|++.++...+...+.....
T Consensus 216 ~---------~~-~~-------~~~~~~~~~~---------~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (438)
T TIGR00712 216 P---------PI-EE-------YRNDYPDDYN---------EK-AEQ-ELTAKEIFMQYVLPNKLLWYIAIANVFVYLLR 267 (438)
T ss_pred C---------Cc-hh-------cccccccccc---------cc-ccc-ccchHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 0 00 00 0000000000 00 000 00000000123567777776655443333322
Q ss_pred hhChhhHHHhHHHHHHHc-CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhc
Q 008804 367 ITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG 445 (553)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (553)
+.+..|.|.++++. |.+. ..++.......+..+++.++.|++.||+++++....+.....+..+..........
T Consensus 268 ----~~~~~~~p~~l~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (438)
T TIGR00712 268 ----YGVLDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA 342 (438)
T ss_pred ----HHHHHhHHHHHHHccCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCC
Confidence 34667889988774 6665 67888888898999999999999999996543322332222222111111111111
Q ss_pred CchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHH-HHHHHHhHHhHHhhCchhHHHHHHHH
Q 008804 446 GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN-AIVTFAFSPLKELLGAENIFLLFAAI 524 (553)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~ 524 (553)
.+.+.. ....+..+....+..........|.+|++.|+++.|+.+..+++++ +++|.+.|.+.|..|+...+++..++
T Consensus 343 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~ 421 (438)
T TIGR00712 343 GNPLVD-MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 421 (438)
T ss_pred CchHHH-HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHH
Confidence 122222 1222222222122111222456789999999999999999888875 68999999999999999999988888
Q ss_pred HHHHHHHHHHhcccCC
Q 008804 525 AFLAVLFIVRTVPETK 540 (553)
Q Consensus 525 ~~~~~~~~~~~~~~~~ 540 (553)
.+++.+..+...+|.|
T Consensus 422 ~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 422 SILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 8888777777777654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=278.64 Aligned_cols=372 Identities=14% Similarity=0.125 Sum_probs=257.3
Q ss_pred ccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHH
Q 008804 114 TSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVL 193 (553)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l 193 (553)
++..++.+.++ +|.+.++.+++.+.+.++..++.+++|+++||+|||++++.+.++.++++++++++++++.+
T Consensus 38 ~~~~~~~i~~~-------~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l 110 (455)
T TIGR00892 38 VTVFFKELQQI-------FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIEL 110 (455)
T ss_pred hhhhHHHHHHH-------hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHH
Confidence 34445555544 99999999999999999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHH
Q 008804 194 LV-GRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 272 (553)
Q Consensus 194 ~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i 272 (553)
++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|++++.+.+.. |||+.|++.+++.++..+
T Consensus 111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~-gwr~~f~~~~~~~~~~~v 188 (455)
T TIGR00892 111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF-GWRGSFLILGGLLLHCCV 188 (455)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 75 5799999999877778888899996 78999999999999999999999999988877 999999999988877665
Q ss_pred HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccch
Q 008804 273 GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 352 (553)
Q Consensus 273 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
..+++.+.+... + +.+.++. ...++ +...+ +.+ .....++..+....++++++.+
T Consensus 189 ~~~~~~~~~~~~--~--------~~~~~~~-------~~~~~-~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~ 243 (455)
T TIGR00892 189 CGALMRPVGPSQ--R--------VSKSKSK-------EGLPP-DGSTK-KLS------KKSTAEKINRFLDFSLFTHRGF 243 (455)
T ss_pred HHHHhCCCCccc--c--------ccccccc-------ccCCC-CCccc-ccc------ccchhhhhhhhcchHHhcCchH
Confidence 544433221100 0 0000000 00000 00000 000 0000000001111246777777
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc--CCchhhHhHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL--GRRPLLIGGVCGI 430 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~ 430 (553)
+......++..+.. .....+++.+.++.+.+. .+++......+++.++++++.+++.||. ++++...++....
T Consensus 244 ~~~~~~~~l~~~~~----~~~~~~l~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 318 (455)
T TIGR00892 244 LVYLSGNVIMFLGF----FAPIIFLVPYAKDKGVDE-YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL 318 (455)
T ss_pred HHHHHHHHHHHHHc----cchHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence 65554433333322 235567788888888776 7888999999999999999999999974 3333333322222
Q ss_pred --HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHh
Q 008804 431 --ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 508 (553)
Q Consensus 431 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 508 (553)
+++.+++.. ..+.+. ++...+..+.......+...+++.|.+|++++++++|+.+....+|.+++|.+.|.+
T Consensus 319 ~~~l~~ll~~~-----~~~~~~-~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l 392 (455)
T TIGR00892 319 FNGLTHLLCAL-----AGDYTG-LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL 392 (455)
T ss_pred HHHHHHHHHHH-----hchHHH-HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence 222222211 122232 333333334444444556668888999999999999999999999999999999999
Q ss_pred HHhhC-chhHHHHHHHHHHHHHH
Q 008804 509 KELLG-AENIFLLFAAIAFLAVL 530 (553)
Q Consensus 509 ~~~~g-~~~~~~~~~~~~~~~~~ 530 (553)
.+..| +...|++.+++.+++++
T Consensus 393 ~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 393 VDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred ehhcCCcchHHHHhhHHHHHHHH
Confidence 99885 88888887776666554
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=266.24 Aligned_cols=364 Identities=21% Similarity=0.235 Sum_probs=276.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 209 (553)
++.+..|.|++.+.+..|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|++||++.|..+|
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~p 147 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFP 147 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHh
Confidence 899999999999999999999999999999999999999999999999999998865 456889999999999999999
Q ss_pred hhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhc-ccCCchhHHHHhh
Q 008804 210 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPSPRWLLLRA 288 (553)
Q Consensus 210 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~-~~~e~p~~~~~~~ 288 (553)
+...+...|.|++||++..++..++..+|.+++.+++|++.+...||++.|++.++++++..++++ +..|+|..
T Consensus 148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~----- 222 (466)
T KOG2532|consen 148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK----- 222 (466)
T ss_pred hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-----
Confidence 999999999999999999999999999999999999999999844999999999999999888774 45666641
Q ss_pred ccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhh
Q 008804 289 VQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT 368 (553)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (553)
+...+++|.+...+...++..+++.+.+++++++++.+|..++..+.. ..
T Consensus 223 --------------------------h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~----~~ 272 (466)
T KOG2532|consen 223 --------------------------HPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGG----NW 272 (466)
T ss_pred --------------------------CCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHH----HH
Confidence 111122222222222222222222577899999999888777544444 44
Q ss_pred ChhhHHHhHHHHHHHc-CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCc---------hhhHhHHHHHHHHHHHHH
Q 008804 369 GQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR---------PLLIGGVCGIALSLLLLS 438 (553)
Q Consensus 369 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~~~~~~~~ 438 (553)
+...+..|.|.|+++. +++- .+.|++.++..+...+..+++|.++||+.+| ..-.++....+++++.+.
T Consensus 273 ~~~~l~~y~PtY~~~VL~f~v-~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~ 351 (466)
T KOG2532|consen 273 GFYLLLTYLPTYLKEVLGFDV-RETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA 351 (466)
T ss_pred HHHHHHHHhhHHHHHHhCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee
Confidence 4456899999999875 5554 8999999999999999999999999998663 112233333444444333
Q ss_pred HHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH---hhCch
Q 008804 439 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---LLGAE 515 (553)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~ 515 (553)
+. .....+..++++.+..++.+.... -.+....+..| ++.+..+|+.+.+..+.++++|.+.|.+.. ...|+
T Consensus 352 ~~---~~~~~~~a~~~l~~~~~~~g~~~~-Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~ 426 (466)
T KOG2532|consen 352 FT---SDEHRLLAVILLTIAIGLSGFNIS-GFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWR 426 (466)
T ss_pred ec---CCCcchHHHHHHHHHHHHcccchh-hhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHH
Confidence 31 122333333333333333332222 22233334344 889999999999999999999999999983 23588
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 008804 516 NIFLLFAAIAFLAVLFIVRTV 536 (553)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~ 536 (553)
..|++.+++.+++.++..++-
T Consensus 427 ~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 427 IVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHhchheeEee
Confidence 999999999998887665553
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=270.10 Aligned_cols=375 Identities=23% Similarity=0.287 Sum_probs=261.4
Q ss_pred HHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 008804 100 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 179 (553)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i 179 (553)
..+..+..+++....+...+.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 22 SFLIMLMDGYDLAAMGFAAPAISAE-------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344556666666666677777665 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHH
Q 008804 180 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259 (553)
Q Consensus 180 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~ 259 (553)
+.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.. +||+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~ 173 (398)
T TIGR00895 95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSL 173 (398)
T ss_pred HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877 99999
Q ss_pred HhhhHHHHHHHHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccc
Q 008804 260 YGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 338 (553)
Q Consensus 260 f~~~~~~~~~~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (553)
|++.+++.++..+ ..+++||++++...+ +.++..+..++.......+..... .++..+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 235 (398)
T TIGR00895 174 FYVGGIAPLLLLLLLMRFLPESIDFLVSK----------RPETVRRIVNAIAPQMQAEAQSAL--------PEQKATQGT 235 (398)
T ss_pred hhhhhhHHHHHHHHHHHhCCCCChHHHhc----------CHHHHHHHHHHHHHhccccccccc--------cccccccch
Confidence 9998766555444 456788887654322 011111111111111000000000 000000000
Q ss_pred ccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 008804 339 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 418 (553)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 418 (553)
.+...+.+++++..+...... +..+...........+.|.+.++.+.+. .+.+.......++.+++.++.+++.||++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (398)
T TIGR00895 236 KRSVFKALFQGKTARITVLLW-LLYFMLLVGVYFLTNWLPKLMVELGFSL-SLAATGGALFNFGGVIGSIIFGWLADRLG 313 (398)
T ss_pred hhHHHHHHhcchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 111112233332222222221 2222333334456677887778888776 77888889999999999999999999999
Q ss_pred CchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHH
Q 008804 419 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 498 (553)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 498 (553)
+|+... ...+.++...++.... .+...... ..+..+.......+...++..|.+|++.|+++.|+.+.+..+|.
T Consensus 314 ~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 387 (398)
T TIGR00895 314 PRVTAL-LLLLGAVFAVLVGSTL----FSPTLLLL-LGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGA 387 (398)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHh----hCHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 984443 3333333333322211 22222222 23333333334455667899999999999999999999999999
Q ss_pred HHHHHHhHHh
Q 008804 499 AIVTFAFSPL 508 (553)
Q Consensus 499 ~~~~~~~g~l 508 (553)
.++|.+.|.+
T Consensus 388 ~~g~~~~G~l 397 (398)
T TIGR00895 388 IIGPILAGYL 397 (398)
T ss_pred HHHHHhHHhc
Confidence 9999999875
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=267.76 Aligned_cols=370 Identities=18% Similarity=0.148 Sum_probs=263.9
Q ss_pred HHHhhhchhhhccccccccCCCCCCCcccccCchhH-----HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 008804 103 GGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQ-----LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 177 (553)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~ 177 (553)
+.++.++......+.++.+.++ +|.+..+ .|++.+++.++..++.+++|+++||+|||++++.+.++.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 94 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQ-------LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM 94 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHH-------hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 3445555556666677776655 7776544 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchH
Q 008804 178 ALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWR 257 (553)
Q Consensus 178 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr 257 (553)
+++.+++++.++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|..++|.+++.+.+.. +||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~ 172 (408)
T PRK09874 95 GIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY-GLR 172 (408)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHH
Confidence 9999999999999999999999999865 56777888999999999999999999999999999999999988777 899
Q ss_pred HHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccc
Q 008804 258 YMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 336 (553)
Q Consensus 258 ~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (553)
+.|++.+++.++..+.. ++++|.++. .++.+ ..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-------------------~~~~------------- 208 (408)
T PRK09874 173 PVFFITASVLFLCFLVTLFCIRENFQP------------VSKKE-------------------MLHM------------- 208 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccc------------ccchh-------------------hhHH-------------
Confidence 99999988877766544 445553210 00000 0000
Q ss_pred ccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCch---hhHHHHHHHHHHHHHHHHHHHHh
Q 008804 337 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAA---DATRVSVVIGVFKLVMTWIAVAK 413 (553)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l 413 (553)
....+.+++++++.......+... ........+.+.+..+.+..... ..+.+....+++.+++.+..|++
T Consensus 209 ----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l 281 (408)
T PRK09874 209 ----REVVTSLKNPKLVLSLFVTTLIIQ---VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKL 281 (408)
T ss_pred ----HHHHHhCcCCchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001123444544332222111111 11122344555565554333211 23455566677888899999999
Q ss_pred hcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHH
Q 008804 414 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 493 (553)
Q Consensus 414 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 493 (553)
.||++||+.+..+..+..++.+.+... .+.+. .....+..+.+.....+...+...+..|++.+|+.+++.+..
T Consensus 282 ~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 355 (408)
T PRK09874 282 GDRIGPEKILITALIFSVLLLIPMSFV-----QTPLQ-LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSF 355 (408)
T ss_pred HhccccchhHHHHHHHHHHHHHHHHHh-----ccHHH-HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHH
Confidence 999999999888777665555443321 22222 223333334444444555556777888989999999999999
Q ss_pred HHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhccc
Q 008804 494 NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 494 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
..+|..++|.+.|.+.+..|++..|++.+++.+++.++.++..++
T Consensus 356 ~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 356 RDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888877766654443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=273.73 Aligned_cols=395 Identities=18% Similarity=0.200 Sum_probs=280.3
Q ss_pred HHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 008804 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 176 (553)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~ 176 (553)
+..++++.++..++....+..+|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 76 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGD-------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA 76 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence 3455667788888888888888888877 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCch
Q 008804 177 YALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGW 256 (553)
Q Consensus 177 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~w 256 (553)
.++++++++++++++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+||.+++++.+.. +|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w 155 (485)
T TIGR00711 77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HW 155 (485)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877 99
Q ss_pred HHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHH--HHHH-HhHhcCCCCCchhHHHHHHHH-----
Q 008804 257 RYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQA--ISAL-GKLRRRPPGDKLSERQIEDTL----- 327 (553)
Q Consensus 257 r~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~----- 327 (553)
|+.|++.++++++..++. +++||+++ +.+++.+..+..-.. .... ......++.++.+........
T Consensus 156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (485)
T TIGR00711 156 RWIFLINVPIGIIVVVVAFFILPRDKP-----AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV 230 (485)
T ss_pred eehhhhhhHHHHHHHHHHHHHcCCccc-----cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence 999999988887766544 44555432 000111110000000 0000 011111111221111110000
Q ss_pred ---HHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHH
Q 008804 328 ---VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFK 403 (553)
Q Consensus 328 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 403 (553)
.....+. +++++....++++++.++...+..++..+..+ ...++.|.++++ .|.+. .+++.......++.
T Consensus 231 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~s~-~~~g~~~~~~~~~~ 304 (485)
T TIGR00711 231 AIIAFVVWEL-TDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLY----GSFYLLPLYLQQVLGYTA-LQAGLHILPVGLAP 304 (485)
T ss_pred HHHHHHHHHH-cCCCCccCHHHHcCCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHH
Confidence 0000000 11111112357788877766555444444333 356678888876 46665 78999999999999
Q ss_pred HHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccch
Q 008804 404 LVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 483 (553)
Q Consensus 404 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 483 (553)
+++.++.|++.||++||+.+..+..+.+++...+.... ..+..........+..+.......+.......+..|++++
T Consensus 305 ~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~ 382 (485)
T TIGR00711 305 MLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF--TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKI 382 (485)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999998888777777666554211 1122222222223333332222222233556677899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 008804 484 GRGISLAVLTNFGSNAIVTFAFSPLKELL 512 (553)
Q Consensus 484 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 512 (553)
+++.|+.++.+.+|+.+++.+.+.+.++.
T Consensus 383 g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 383 ARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=262.95 Aligned_cols=441 Identities=21% Similarity=0.286 Sum_probs=315.8
Q ss_pred cchhhhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCccc-ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008804 88 FSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTW-FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR 166 (553)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr 166 (553)
..|+. +..+.+...+.+.++||...++...+-+...+..+++. =+.++.-.+.+..+..+|..+|++++|++.||+||
T Consensus 35 ~qw~~-fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 35 LQWKH-FKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred hhHHH-HHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34544 44466788899999999999888777666543332210 13567788999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHH
Q 008804 167 KRELIIAAVLYALGALTTAYAP-------GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGI 239 (553)
Q Consensus 167 k~~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~ 239 (553)
|+++...++++.+++++++++. =.+++.+.|++.|+|.|+-+|.+.++.+|...+++||...+.+.+..++|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 9999999999999999888753 257899999999999999999999999999999999999998888777777
Q ss_pred HHHHHhhhcccC----CC----------CchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHH
Q 008804 240 LLGYFVGSFQIN----AV----------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISA 305 (553)
Q Consensus 240 ~~g~~l~~~l~~----~~----------~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 305 (553)
..|.+++-.+.. .. .-||..|-+.++++++.+...+.+|||++|-....+ +.+.+.+
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~--------~~~~a~~- 264 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSK--------KLKQAAG- 264 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhc--------CHhhhhh-
Confidence 777766555431 11 149999999999999999999999999987533211 1111111
Q ss_pred HHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccce---ecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH
Q 008804 306 LGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFL---EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ 382 (553)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (553)
...+.... +.++.. ......+.++.++. ..+... --..+++.+..++..-..++....+...+++
T Consensus 265 --d~~k~~~~------~~~~~~---~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~ 332 (538)
T KOG0252|consen 265 --DMKKVLSV------DIEAES---TAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFS 332 (538)
T ss_pred --cccccccc------ccchhh---ccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHH
Confidence 01000000 000000 00111111122222 222222 2245666777777777777788888899998
Q ss_pred HcCCCCchhhH--------HHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHH
Q 008804 383 SAGFSAAADAT--------RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSA 454 (553)
Q Consensus 383 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (553)
+.+..+..+.. .-..+...+.+.|..+..+++|++|||+..+.+++++.+..+.+...+.... ......+.
T Consensus 333 ~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-~~~Gf~v~ 411 (538)
T KOG0252|consen 333 AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-NTIGFVVL 411 (538)
T ss_pred hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-ccCceeeh
Confidence 87776532222 1112222233345666667899999999999999999998888876443111 22233344
Q ss_pred HHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH-----hhCchhHHHHHHHHHHHHH
Q 008804 455 LLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-----LLGAENIFLLFAAIAFLAV 529 (553)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~ 529 (553)
..+...+..++.......+.+|.+|.+.|+++.|+...++-.|++++...++++.+ ..|..+.+++++++++++.
T Consensus 412 y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi 491 (538)
T KOG0252|consen 412 YSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGI 491 (538)
T ss_pred HHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhH
Confidence 44455556666677777899999999999999999999999999999999999999 7889999999999998887
Q ss_pred HHHHHhcccCCCCCHHHHHhhhh
Q 008804 530 LFIVRTVPETKGLSLEEIESKIL 552 (553)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~ 552 (553)
++.+ +.||+++|+++|++++.+
T Consensus 492 ~~T~-l~pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 492 LFTL-LIPETKGKSLEEISNEEE 513 (538)
T ss_pred heeE-EeecccccCHHHhcChhh
Confidence 7554 567999999999866543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=260.88 Aligned_cols=375 Identities=17% Similarity=0.134 Sum_probs=259.9
Q ss_pred HHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 008804 94 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 173 (553)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~ 173 (553)
........+..+....+.....+.+|.+.++ ++.+..+.++..+++.++++++++++|+++||+|||++++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~ 87 (413)
T PRK15403 15 LFFPMALILYDFAAYLTTDLIQPGIINVVRD-------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITG 87 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHH
Confidence 3334444566677777888888888887766 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCC
Q 008804 174 AVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 253 (553)
Q Consensus 174 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~ 253 (553)
.+++++++++++++++++.++++|+++|++.+...+...+++.|++++++|+++++++.....+|..+||++++.+.+..
T Consensus 88 ~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~ 167 (413)
T PRK15403 88 ALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV 167 (413)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998777778888999999999999999999999999999999999988776
Q ss_pred CchHHHHhhhHHHHHHHHHH-hcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhh
Q 008804 254 GGWRYMYGLSAPLALLMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKS 332 (553)
Q Consensus 254 ~~wr~~f~~~~~~~~~~~i~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (553)
+||+.|++.+++.++..+. .+.+||+++. + ++ +.+ .
T Consensus 168 -gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~--------~----~~---------------~~~---~------------ 204 (413)
T PRK15403 168 -HWKVLFAIIAVMGLIAFVGLLLAMPETVKR--------G----AV---------------PFS---A------------ 204 (413)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhCCCCccc--------c----CC---------------CCC---h------------
Confidence 9999999999888877664 3557776430 0 00 000 0
Q ss_pred ccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHc-CCCCchhhHHHHHHHHHHHHHHHHHHH
Q 008804 333 SYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAV 411 (553)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g 411 (553)
+.....++.++|++.++...+...+..... ..+..+.|.++++. +.+. .+.++.......+.+++..+.+
T Consensus 205 ----~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~----~~~~~~~P~~l~~~~g~s~-~~~gl~~~~~~~~~~i~~~l~~ 275 (413)
T PRK15403 205 ----KSVLRDFRNVFRNRLFLTGAATLSLSYIPM----MSWVAVSPVILIDAGGMTT-SQFAWTQVPVFGAVIVANAIVA 275 (413)
T ss_pred ----HHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----HHHHHhChHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 000112456778887776655444433332 23556678787765 5655 7788888888888888888888
Q ss_pred HhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHH
Q 008804 412 AKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV 491 (553)
Q Consensus 412 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 491 (553)
++.++..+++.......+..++..++........+..+..+...++...+.+ ...|......-.. ....+|++.++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~-~~~p~~~~~al~~-~~~~~G~a~a~~~ 353 (413)
T PRK15403 276 RFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIG-LIFPTLFRFTLFS-NNLPKGTVSASLN 353 (413)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH-HHhHHHHHHHhcc-CCCCCcHHHHHHH
Confidence 7765544444433222222233222222110111222112222222222222 2223332222111 2234799999999
Q ss_pred HHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 492 LTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 492 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
.....+...++...+++.+. +....|...++++.+...
T Consensus 354 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 391 (413)
T PRK15403 354 MVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVV 391 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHH
Confidence 99999999999999988776 556666666555544433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=266.67 Aligned_cols=349 Identities=15% Similarity=0.106 Sum_probs=260.9
Q ss_pred HhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008804 105 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT 184 (553)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~ 184 (553)
++..+........++....+ ++.+..++|++.+++.++..++.+++|+++||+|||++++.+.++.+++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLA-------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 33334444444555555544 78899999999999999999999999999999999999999999999999988
Q ss_pred Hhcc-----hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHH
Q 008804 185 AYAP-----GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259 (553)
Q Consensus 185 ~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~ 259 (553)
++.+ +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+.. +||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~~ 160 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKWA 160 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 8887 99999999999999999999999999999999999999999999999999999999999988877 99999
Q ss_pred HhhhHHHHHHHHHHhccc--CCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccc
Q 008804 260 YGLSAPLALLMGIGMWSL--PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 337 (553)
Q Consensus 260 f~~~~~~~~~~~i~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (553)
|++.++..++..+..+.+ ||.++ ++++ +.+++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-----------------~~~~~~~~------------- 197 (365)
T TIGR00900 161 IWVDAVGFAISALLIVSVRIPELAA-------------SEIQ-----------------ALSNAVLR------------- 197 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCC-------------cccc-----------------ccchhHHH-------------
Confidence 999888776665544433 22111 0000 00000000
Q ss_pred cccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008804 338 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 416 (553)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 416 (553)
+....++.+++++.++...+...+....... ....+.|.+.++ .+.+. .+.+.......++.+++.++.+++.||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (365)
T TIGR00900 198 DTREGIKFVLKNPLLRTLLLLALLFNLVFAP---AIVALFPYVQSKYLGRGS-THYGWVLAAFGLGALLGALLLGLLGRY 273 (365)
T ss_pred HHHhHHHHHHcCcHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011234566777766655544443333221 223567777765 56665 788888999999999999999999999
Q ss_pred cCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHH
Q 008804 417 LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG 496 (553)
Q Consensus 417 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 496 (553)
.+||+.+..+..+.+++...+... ..+........+..+.......+...++..|..|++.|+++.|+.+....+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 348 (365)
T TIGR00900 274 FKRMALMTGAIFVIGLAILVVGLT-----PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHA 348 (365)
T ss_pred hchhHHHHHHHHHHHHHHHHHHhh-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999998887766666655554432 111333333334444444445566678899999999999999999999999
Q ss_pred HHHHHHHHhHHhHHhhC
Q 008804 497 SNAIVTFAFSPLKELLG 513 (553)
Q Consensus 497 g~~~~~~~~g~l~~~~g 513 (553)
+..++|.+.|.+.|..|
T Consensus 349 ~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 349 AWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999998764
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=261.14 Aligned_cols=350 Identities=16% Similarity=0.157 Sum_probs=246.4
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---h-cchHHHHHHHHHHHHHHhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---Y-APGLGVLLVGRLLYGLGIGLA 207 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~ 207 (553)
+|.++.+.|++.+.+.+++.++.+++|++.||+|||+++..+.++.+++++++. + .++++.+++.|++.|++.+..
T Consensus 43 ~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~ 122 (402)
T TIGR00897 43 LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLF 122 (402)
T ss_pred hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHH
Confidence 899999999999999999999999999999999999999999999999877653 3 358889999999999999888
Q ss_pred hhhhhhHhhhccccccchhHHhHHHHHHHHHH-HHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCCchhHHH
Q 008804 208 MHGAPLYIAETCPSQIRGTLISLKELFIVLGI-LLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLL 285 (553)
Q Consensus 208 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~-~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~ 285 (553)
.+...+.+.+++|+++|++++|+.+.+.++|. .+++.+++.+.+.. ||+..+|......++..++. ++.++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 198 (402)
T TIGR00897 123 AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-GEMNTLWSALAFVLTGGVIALFSNKDIFT--- 198 (402)
T ss_pred HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHhccCCCCC---
Confidence 88888889999999999999999999999997 68999998888777 87766665544433333333 33333211
Q ss_pred HhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHH
Q 008804 286 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 365 (553)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (553)
+++ +++ + .+ .. +....++.++++|.++...+..++...
T Consensus 199 ----~~~---~~~---------------~-~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (402)
T TIGR00897 199 ----PQH---MQT---------------R-EK-----FS-------------ELGKAATILFTNPNVLLGGMVRIINTI- 236 (402)
T ss_pred ----ccc---ccC---------------C-cc-----hh-------------hHHHHHHHHHcChhHHHHHHHHHHHHH-
Confidence 000 000 0 00 00 000113356777776655443333222
Q ss_pred HhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhH-hHHHHHHHHHHHHHHHHHhh
Q 008804 366 QITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI-GGVCGIALSLLLLSAYYKIL 444 (553)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~ 444 (553)
....+..|.|.++++.|.+. .+.+.......++.+++.++.|+++||++||+... .+.+...++...+.......
T Consensus 237 ---~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 312 (402)
T TIGR00897 237 ---GLFGFAVFLPMFVAELGFST-SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF 312 (402)
T ss_pred ---HHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 23356778899998888876 67788888888999999999999999999888764 23333333322222211111
Q ss_pred cCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHH
Q 008804 445 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 524 (553)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 524 (553)
....+. .....+..+.+.....+.. ....|..| ++|+++.|+.+....+++.++|.+.|.+.+..|+...+++.+++
T Consensus 313 ~~~~~~-~~~~~~~~G~~~~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~ 389 (402)
T TIGR00897 313 GHSFAV-ALIIAIALGIFLAGYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL 389 (402)
T ss_pred CCcHHH-HHHHHHHHHHHHHHHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 112222 2222223333323333433 45566644 68999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHH
Q 008804 525 AFLAVLFIVR 534 (553)
Q Consensus 525 ~~~~~~~~~~ 534 (553)
.+++.++..+
T Consensus 390 ~~i~~~~~~~ 399 (402)
T TIGR00897 390 YVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHH
Confidence 7777665554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=272.48 Aligned_cols=372 Identities=19% Similarity=0.123 Sum_probs=258.6
Q ss_pred HhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008804 105 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT 184 (553)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~ 184 (553)
++..++...++...+.+.++ +|.+..+.|++.+++.++..++.++.|+++||+|||++++.+.++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 77 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEE-------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF 77 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHH-------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH
Confidence 34445566666666766655 89999999999999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHH-HhhhcccCCCCchHHHHhhh
Q 008804 185 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY-FVGSFQINAVGGWRYMYGLS 263 (553)
Q Consensus 185 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~-~l~~~l~~~~~~wr~~f~~~ 263 (553)
+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .+++.+.+.. +||+.|++.
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~ 156 (379)
T TIGR00881 78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY-SWHWVFIVP 156 (379)
T ss_pred HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 4666655555 999999998
Q ss_pred HHHHHHHHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccccccc
Q 008804 264 APLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGS 342 (553)
Q Consensus 264 ~~~~~~~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (553)
+++.++..+ ..++.+|+|+....+ + ..+.+.++ .+.+. .+++.+.+..+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~-----------~~~~~------------~~~~~~~~~~~~~ 208 (379)
T TIGR00881 157 GIIAIIVSLICFLLLRDSPQSCGLP----P-AEEMPNEE-----------PDGDA------------EKKEEELTKKQIF 208 (379)
T ss_pred HHHHHHHHHHHheeeCCCccccccC----c-cccCcccc-----------ccccc------------ccccccccchHHH
Confidence 887776554 445566665310000 0 00000000 00000 0000001111123
Q ss_pred ceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCch
Q 008804 343 FLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP 421 (553)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 421 (553)
.+.+++++.++...+...+..... ..+..+.|.++.+ .+.+. .+.+.......++.+++.++.+++.||..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 283 (379)
T TIGR00881 209 LQYVLLNKVLWYISLGYVFVYVVR----TGILDWSPLYLTQEKGFSK-EKASWAFTLYELGGLVGTLLAGWLSDKLFNGR 283 (379)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence 445677777666555444443333 2466677777755 56665 78888899999999999999999999864333
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHH
Q 008804 422 LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 501 (553)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 501 (553)
...............+...... ............+..+....+..+....+..|.+|++.|+++.|+.+....+|+.++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 362 (379)
T TIGR00881 284 RGPLAVFFMALIIVSLLVYWLN-PAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILA 362 (379)
T ss_pred chHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhh
Confidence 2222222222111111111110 111222222223333333333344445778999999999999999999999999999
Q ss_pred HHHhHHhHHhhCchhHH
Q 008804 502 TFAFSPLKELLGAENIF 518 (553)
Q Consensus 502 ~~~~g~l~~~~g~~~~~ 518 (553)
|.+.|.+.|..|++..|
T Consensus 363 ~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 363 GLPLGYLADGFGWAGAF 379 (379)
T ss_pred hhhHHHHHHhhcccccC
Confidence 99999999999986543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=259.22 Aligned_cols=359 Identities=16% Similarity=0.120 Sum_probs=256.9
Q ss_pred HHhhhchhhhcccccccc-CCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHH
Q 008804 104 GLLFGYDIGATSGATISL-QSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI-IAAVLYALGA 181 (553)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~-~~~~~~~i~~ 181 (553)
.++.++..+...+.++.. .++ +|.|..++|++.+++.+...+.+++.|+++||+||||.++ .+..+.+++.
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~ 78 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEE-------VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALAC 78 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 345555566666666653 344 8999999999999999999999999999999999988765 4666667788
Q ss_pred HHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhH--HhHHHHHHHHHHHHHHHhhhcccCCCCchHHH
Q 008804 182 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL--ISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259 (553)
Q Consensus 182 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~ 259 (553)
++++++++++.+++.|++.|.+.+...|...+++.|+.|+++|++. .+....+.++|..+++.+++.+.+.. +||+.
T Consensus 79 ~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~ 157 (375)
T TIGR00899 79 LLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTVM 157 (375)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHHH
Confidence 8899999999999999999988888888888999999887777654 57888888999999999999988777 99999
Q ss_pred HhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccc
Q 008804 260 YGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 338 (553)
Q Consensus 260 f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (553)
|++.+++.++..+.. +++||.|++... + .
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-------------------------------------~ 187 (375)
T TIGR00899 158 FLTAALAFVLCGVLVWLFLPSYPRGAPG-------------A-------------------------------------L 187 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCccc-------------c-------------------------------------c
Confidence 999998877766654 457776541000 0 0
Q ss_pred ccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHH-HHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008804 339 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 417 (553)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 417 (553)
+..+.++.++++.++.......+.+... .....+.|.++ ++.+.+. .+.+.......+..+++.++.+++.||+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~ 262 (375)
T TIGR00899 188 TRLEVRGLLASRDTRLLFVACTLMWGCN----ILYIINMPLLIIHELGLPD-KLAGLMMGTAAGLEIPFMLLAGYLIKRF 262 (375)
T ss_pred CcchhhhhhcCcchHHHHHHHHHHHHHH----HHHHhhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 0001122455555555444333333322 12344556665 4456665 6777777777777788899999999999
Q ss_pred CCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHH
Q 008804 418 GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGS 497 (553)
Q Consensus 418 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 497 (553)
++|+.+..+.++..+....+... ++.+... ...+..+.......+....+..|..|+ +++++.++.+...++|
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 335 (375)
T TIGR00899 263 GKRRLMLLAALAGVAFYTGLAAD-----NSLWALL-MLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVG 335 (375)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHH
Confidence 99998877665544443332221 1222222 222222322223344555777888775 5679999999999999
Q ss_pred HHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHH
Q 008804 498 NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 532 (553)
Q Consensus 498 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 532 (553)
..++|.+.|.+.+..|++..|++.+++.+++.++.
T Consensus 336 ~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 336 WIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888777766654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=260.93 Aligned_cols=345 Identities=17% Similarity=0.187 Sum_probs=255.5
Q ss_pred HhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008804 105 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT 184 (553)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~ 184 (553)
+..........+..|.+.++ +|.++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 87 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAAD-------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL 87 (385)
T ss_pred HHHHHHHHHhcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 33445566666777766665 99999999999999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhH
Q 008804 185 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA 264 (553)
Q Consensus 185 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~ 264 (553)
+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+.. +||+.|++.+
T Consensus 88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~~~~~~ 166 (385)
T TIGR00710 88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL-SWHAIFAFLS 166 (385)
T ss_pred HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988777 9999999988
Q ss_pred HHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccc
Q 008804 265 PLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF 343 (553)
Q Consensus 265 ~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (553)
++.++..+.. ++.||+++. ++. ++ . +.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~-------------~~~----------------~~--~----------------~~~~~~~ 199 (385)
T TIGR00710 167 LAGILLSALIFFILPETLPY-------------EAR----------------IQ--I----------------STYFETF 199 (385)
T ss_pred HHHHHHHHHHHHhCCCCCCC-------------ccc----------------CC--H----------------HHHHHHH
Confidence 8877766544 445654320 000 00 0 0000123
Q ss_pred eecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchh
Q 008804 344 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 422 (553)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 422 (553)
++++++++++...+...+..... .....+.|.+++ +.+.++ .+.+.+.....++.+++.++.+++.||+++|+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~ 274 (385)
T TIGR00710 200 LLLLKSKMFWGYALIYGASFGGF----FAFFSGAPFVYIDIMGVSP-SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL 274 (385)
T ss_pred HHHHcCchhHHHHHHHHHHHHHH----HHHHHcChHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34566676665554433333222 235556676665 566665 788888888999999999999999999999998
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHH
Q 008804 423 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT 502 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 502 (553)
+..+..+..++.+++...... ....+..........+.......+.......|..| +.++++.++.+.....++.+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~ 352 (385)
T TIGR00710 275 LRMGLILFAVSAVLLEITAIL-GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVG 352 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHH
Confidence 888777666666555432211 11222222333333333333344455567778777 6789999999988877666777
Q ss_pred HHhHHhHHh
Q 008804 503 FAFSPLKEL 511 (553)
Q Consensus 503 ~~~g~l~~~ 511 (553)
.+.+.+.+.
T Consensus 353 ~~~~~~~~~ 361 (385)
T TIGR00710 353 YLVSLIHGN 361 (385)
T ss_pred HHHHhcccc
Confidence 667744443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=260.85 Aligned_cols=341 Identities=19% Similarity=0.184 Sum_probs=251.4
Q ss_pred chhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 008804 109 YDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP 188 (553)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~ 188 (553)
+......+..+.+.++ +|.++.+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 20 ~~~~~~~p~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 20 LATDMYLPAFKAIQAD-------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHhhHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555666655555 999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHH
Q 008804 189 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLAL 268 (553)
Q Consensus 189 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~ 268 (553)
+++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+.+.. +||+.|++.+++.+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~~~~~~~~~~ 171 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF-GWQAIFATLFAITL 171 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence 99999999999999998888888899999999999999999999999999999999999988877 99999999988888
Q ss_pred HHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceeccc
Q 008804 269 LMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 348 (553)
Q Consensus 269 ~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (553)
+..+..++++|+++ +++ +++++.+++++++
T Consensus 172 ~~~~~~~~~~~~~~-------------~~~-------------------------------------~~~~~~~~~~~~~ 201 (401)
T PRK11043 172 LLILPTLRLKPSKK-------------ARK-------------------------------------QSQDALTFKQLLK 201 (401)
T ss_pred HHHHHHHHcCCCCC-------------ccc-------------------------------------cchHHHHHHHHHc
Confidence 87766665655432 000 0000112345566
Q ss_pred ccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHH
Q 008804 349 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 428 (553)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 428 (553)
++.++...+...+.... +.....+.|.++++.+.+. .+.+.......++.+++.++.+++.||+++|+.......
T Consensus 202 ~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~ 276 (401)
T PRK11043 202 SKTYLGNVLIFAACSAA----FFAWLTGSPFILEQMGYSP-ADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLV 276 (401)
T ss_pred ChhHHHHHHHHHHHHHH----HHHHHHHhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 66655443332222221 1234566788888888776 677887788888889999999999999999887766555
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHh
Q 008804 429 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 508 (553)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 508 (553)
..+++.+.+...........+ .........++......+.......+..| +.++++.|+.+.....++..++.+.|.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 277 LFAVSVIAIWLASLLSHPSLV-PLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555544433322211112222 22222223333333444555556666666 6799999999999999999999999998
Q ss_pred HHhhCc
Q 008804 509 KELLGA 514 (553)
Q Consensus 509 ~~~~g~ 514 (553)
.+....
T Consensus 355 ~~~~~~ 360 (401)
T PRK11043 355 ISTPLL 360 (401)
T ss_pred cCCChh
Confidence 875443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-31 Score=259.09 Aligned_cols=366 Identities=16% Similarity=0.112 Sum_probs=257.1
Q ss_pred HHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 008804 98 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 177 (553)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~ 177 (553)
+.+.+..+..++.....+..+|.++++ +|+++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~-------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 344455577777777777777777655 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccC-C-
Q 008804 178 ALGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-A- 252 (553)
Q Consensus 178 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~-~- 252 (553)
+++++++ +++++++.++++|+++|+|.|...+..+.++.|+.++++|.+.+++.+..+.+|..+++.+++.+.. .
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999886 5689999999999999999999999999999998877777778999999999999999998775431 0
Q ss_pred ----------------C-------CchHHHHhhhHHHHH-HHHHH-hcccCCchhHHHHhhccCCCchhhhHHHHHHHHH
Q 008804 253 ----------------V-------GGWRYMYGLSAPLAL-LMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 307 (553)
Q Consensus 253 ----------------~-------~~wr~~f~~~~~~~~-~~~i~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (553)
. .+||++|+....+.. +..+. ...+||.+. +++
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-------------~~~--------- 239 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-------------DNH--------- 239 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------------ccc---------
Confidence 0 156666664333333 32222 223343211 000
Q ss_pred hHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHH-HH-cC
Q 008804 308 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QS-AG 385 (553)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 385 (553)
.+.+........++++++|.++...+..++...... ....|.+.++ ++ .|
T Consensus 240 ------------------------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~l~~~~~g 291 (438)
T PRK10133 240 ------------------------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT----ACWSYLIRYAVEEIPG 291 (438)
T ss_pred ------------------------ccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCC
Confidence 000000011224467788877765544433333222 2444566564 43 46
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcC
Q 008804 386 FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQIS 465 (553)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (553)
.+. ..++.......++.++++++++++.||+++|+.+..+.++..+.+++..+. ... ..+ ..+...+++...
T Consensus 292 ~s~-~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~-~~~-~~~~l~glg~~~ 363 (438)
T PRK10133 292 MTA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGH-VGL-IALTLCSAFMSI 363 (438)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CCh-HHH-HHHHHHHHHHHH
Confidence 665 889999999999999999999999999999999887766655544433221 111 222 223334444555
Q ss_pred cccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC-chhHHHHHHHHHHHHHH
Q 008804 466 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVL 530 (553)
Q Consensus 466 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 530 (553)
..|..++...+..|+ +.+.+.++..+ ..+|+.++|.+.|.+.|..| .+..|++..++.+....
T Consensus 364 i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 364 QYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 667777888888774 46777787764 55788999999999999887 56777655444444333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=260.56 Aligned_cols=370 Identities=19% Similarity=0.190 Sum_probs=255.0
Q ss_pred hhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 008804 92 SVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI 171 (553)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~ 171 (553)
......+++++..++...|...+......+... +|++++..|++.+.+.+.+.+++|+.|+++|||.||+++.
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~-------fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~ 102 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQTY-------FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIA 102 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHh-------cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEe
Confidence 344445667777888888887777766665544 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccC
Q 008804 172 IAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 251 (553)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~ 251 (553)
+|..++.++.++++++..||+++++|.+.|+|.+...+.++++++|.+|.++|++++++++...++|..+|.+.+..+.+
T Consensus 103 vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~ 182 (493)
T KOG1330|consen 103 VGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS 182 (493)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCchHHHHhhhHHHHHHHHHHhcc-cCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHh
Q 008804 252 AVGGWRYMYGLSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSL 330 (553)
Q Consensus 252 ~~~~wr~~f~~~~~~~~~~~i~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (553)
....|||.|+..+++++++.++.++ ++|+++ +..++ ..+.++.
T Consensus 183 ~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r--------------ga~~~-------~~~~~~~--------------- 226 (493)
T KOG1330|consen 183 LTFWWRWAFRGSAVLGVIVGLLVFLFVREPER--------------GARDE-------VDGENKM--------------- 226 (493)
T ss_pred CccceEEEEEeehHHHHHHHHHHHhhccCccc--------------ccccc-------cccCCcC---------------
Confidence 8756999999999999998887755 455432 00000 0000000
Q ss_pred hhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHH----HHcCCCCchhhHHHHHHHHHHHHHH
Q 008804 331 KSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL----QSAGFSAAADATRVSVVIGVFKLVM 406 (553)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (553)
........+..+.+.+++.+....+......+.. ..+.+|.|.+. +-.+.+. .+..++..+...++.+|
T Consensus 227 --~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~----Gs~sww~p~~~~~~~~~~~~~~-~~~~ifg~vt~~~G~lG 299 (493)
T KOG1330|consen 227 --VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVI----GSLSWWAPAFIYYSYELIGFDH-NATLIFGGVTCAGGSLG 299 (493)
T ss_pred --CCCccchHHHHHHHHccCceeeehHHHHHHHHhc----cccchhhhhHHHHHHHHhCCcc-ccchhhhhHHHhhchhh
Confidence 0001111112233344444443333333333332 23455555444 3344444 56777788888999999
Q ss_pred HHHHHHhhcccCC----chhhH----hHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccC
Q 008804 407 TWIAVAKVDDLGR----RPLLI----GGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF 478 (553)
Q Consensus 407 ~~~~g~l~d~~g~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (553)
.+++|.++||+.| ..... .+......+..++....... .......+.+++..-...........-+..|++
T Consensus 300 vl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~-~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV 378 (493)
T KOG1330|consen 300 VLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFT-SSSMIFGLILFLVGETISWFNWATNNPIFLEVV 378 (493)
T ss_pred heehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhcccccccceeeEec
Confidence 9999999999432 11222 22222222222222222111 222222222222222222223334446788999
Q ss_pred CccchhhHHHHHHHH-HHHHHHHHHHHhHHhHHhh
Q 008804 479 PLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELL 512 (553)
Q Consensus 479 p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~ 512 (553)
|++.|.+++++...+ ..+|.+-+|++.|.+.|+.
T Consensus 379 ~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 379 PPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred CcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 999999999998877 4555566677999999875
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=253.50 Aligned_cols=350 Identities=15% Similarity=0.064 Sum_probs=247.1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
++.+..+.+++.+.+.+++.++.+++|+++||+|||++++++.++.++++++++++.+. ++.|+++|++.+...|+.
T Consensus 33 ~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~ 109 (393)
T PRK11195 33 LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAK 109 (393)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999988877664 788999999999999999
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccC
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQG 291 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~ 291 (553)
.+++.|++|+++|++++++.+....+|.++||.+++++.+. .|+..+.+.+...++..+..+.+||+|....
T Consensus 110 ~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~------ 181 (393)
T PRK11195 110 YGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIYLLAALFNLFIPRLGARRP------ 181 (393)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccccc------
Confidence 99999999999999999999999999999999999998875 5888888777666655555667777653100
Q ss_pred CCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChh
Q 008804 292 KGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP 371 (553)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (553)
+ + +.+.. ....+.. ..++.+++++.++..+....+.+....
T Consensus 182 ~-~-~~~~~--------------------~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~---- 222 (393)
T PRK11195 182 G-Q-SWNPI--------------------ALLRDFF-------------HACRVLWRDKLGRFSLAGTTLFWGAGA---- 222 (393)
T ss_pred c-c-CCCHH--------------------HHHHHHH-------------HHHHHHHhCchhHHHHHHHHHHHHHHH----
Confidence 0 0 00000 0000000 012345666666554443333322222
Q ss_pred hHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHH
Q 008804 372 SVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 450 (553)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (553)
...+..+.++++ .+.+. .+.+......+++.+++.++.+++.||.++++.+..+.. .++....+.. ..+.+.
T Consensus 223 ~~~~~~~~~~~~~lg~s~-~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~-----~~~~~~ 295 (393)
T PRK11195 223 TLRFLVLAWAPVALGITL-NQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL-----QHSLLP 295 (393)
T ss_pred HHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH-----HhHHHH
Confidence 233344444544 45655 789999999999999999999999999998887766643 3332222221 122222
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhcccCCccc-hhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHH
Q 008804 451 AVSALLLYVGCYQISFGPISWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV 529 (553)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 529 (553)
.....+..+.......+...+...+..|++. +|++.++.+..++++..++..+.+.+ +..|....+++.+...+++.
T Consensus 296 -~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 373 (393)
T PRK11195 296 -AYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVAL 373 (393)
T ss_pred -HHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 2223323333332333334466777756544 79999999999999999999998855 67888777777766666666
Q ss_pred HHHHHhcccCC
Q 008804 530 LFIVRTVPETK 540 (553)
Q Consensus 530 ~~~~~~~~~~~ 540 (553)
.+.+.++.+.+
T Consensus 374 ~~~~~~~~~~~ 384 (393)
T PRK11195 374 AMALLWRWHRR 384 (393)
T ss_pred HHHHHHHHHHh
Confidence 66555544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=255.32 Aligned_cols=344 Identities=17% Similarity=0.182 Sum_probs=242.1
Q ss_pred hccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHH
Q 008804 113 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGV 192 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~ 192 (553)
...+.+|.+.++ +|.+..+.++..+.+.++..++.++.|+++||+|||++++.+.++.+++.+++.++++++.
T Consensus 21 ~~~~~lp~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~ 93 (392)
T PRK10473 21 MYLVGLPRIAAD-------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL 93 (392)
T ss_pred HHhhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 333556666655 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHH
Q 008804 193 LLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 272 (553)
Q Consensus 193 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i 272 (553)
+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+.. +||+.|++.+++.++..+
T Consensus 94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~-g~~~~~~~~~~~~~i~~~ 172 (392)
T PRK10473 94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF-PWQSLFYTMAAMGILVLL 172 (392)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999877766 999999999888777665
Q ss_pred Hh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccc
Q 008804 273 GM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 351 (553)
Q Consensus 273 ~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (553)
+. +++||+++. + +++ +. ......++.++++.
T Consensus 173 ~~~~~~~~~~~~--------~---~~~-----------------~~--------------------~~~~~~~~~~~~~~ 204 (392)
T PRK10473 173 LSLFILKETRPA--------R---APA-----------------AS--------------------SKPRENSESLLNRF 204 (392)
T ss_pred HHHHHcCCCCCc--------c---cCC-----------------cc--------------------chHHHHHHHHhCHH
Confidence 44 556664320 0 000 00 00001123455555
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHhHHHHH-HHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHH
Q 008804 352 LKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 430 (553)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 430 (553)
++...+...+...... ....+.|.++ ++.|.+. .+.+.......++.+++.++.+++.||+++|+.+..+.++.
T Consensus 205 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~ 279 (392)
T PRK10473 205 FLSRLVITTLSVTVIL----TFVNTSPVLLMEQMGFSR-GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF 279 (392)
T ss_pred HHHHHHHHHHHHHHHH----HHHHhCHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5443333222222211 2334455555 4457665 67888888899999999999999999999999988887777
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH
Q 008804 431 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 510 (553)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 510 (553)
.++.+.+.... . .........+...+.+.+.. . ....+..|.+.|+ |.......++..+++.+.+.+.+
T Consensus 280 ~~~~~~~~~~~----~-~~~~~~~~~l~~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 280 LAAGITLALSP----S-HAVSLFGITLICAGFSVGFG-V--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHhH-H--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666555432 1 11222222222222222221 1 2334444544443 44445556777888888888888
Q ss_pred hhCchhHHHHHHHHHHHH
Q 008804 511 LLGAENIFLLFAAIAFLA 528 (553)
Q Consensus 511 ~~g~~~~~~~~~~~~~~~ 528 (553)
..|+.....+.+.+.+..
T Consensus 349 ~~g~~~~~~~~~~~~~~~ 366 (392)
T PRK10473 349 VLGISAWNMLIGILIACS 366 (392)
T ss_pred HhccchhHHHHHHHHHHH
Confidence 888765555444434333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=242.57 Aligned_cols=351 Identities=20% Similarity=0.235 Sum_probs=274.6
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG---VLLVGRLLYGLGIGLAM 208 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~---~l~~~r~l~G~~~g~~~ 208 (553)
+|+|+.|.+++.++..+...+.-++.|.+.||||.|++..++.++..+-.+..+++.+.+ ++++++++.|++ |+.+
T Consensus 44 ~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasF 122 (417)
T COG2223 44 FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASF 122 (417)
T ss_pred cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-ccee
Confidence 999999999999999999999999999999999999999999999999999999976554 999999999997 4588
Q ss_pred hhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCc---hHHHHhhhHHHHHHHHHHh-cccCCchhHH
Q 008804 209 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG---WRYMYGLSAPLALLMGIGM-WSLPPSPRWL 284 (553)
Q Consensus 209 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~---wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~ 284 (553)
.....++++|||++++|.++|+.. ..++|..+...++..++... + ||....+..+..++..++. +...|.|...
T Consensus 123 av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r 200 (417)
T COG2223 123 AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR 200 (417)
T ss_pred hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence 889999999999999999999999 88999999888888887777 6 9999999988888866655 4555555310
Q ss_pred HHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHH
Q 008804 285 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLF 364 (553)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (553)
.. .++.....++.++++++.|.+.+. ++
T Consensus 201 ~~------------------------------------------------~~~~~~~~~~~v~~~~~~W~lsll----Y~ 228 (417)
T COG2223 201 AS------------------------------------------------VKPQLPAQLKAVFSNKDTWLLSLL----YF 228 (417)
T ss_pred cc------------------------------------------------ccccchhHHHHHhcCcchHHHHHH----HH
Confidence 00 000000345667788888877644 44
Q ss_pred HHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHh
Q 008804 365 QQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKI 443 (553)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (553)
..+.++..+..++|.++++ ++.+. ..++.......+.+.+.++++|+++||+|.+|.+.+.+..++++...+......
T Consensus 229 ~tFG~Fvgfs~~l~~~~~~~fg~~~-~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~ 307 (417)
T COG2223 229 ATFGGFVGFSAYLPMYLVTQFGLSP-VTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTG 307 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccc
Confidence 4444555688899988866 55555 788899999999999999999999999999999998888888887777654321
Q ss_pred hc-CchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC-chhHHHHH
Q 008804 444 LG-GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLF 521 (553)
Q Consensus 444 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~ 521 (553)
.. ..+.......++..+.+...-....+-++...+| ++.|.+.|+...++.+|++.-|...|...+..| +...|+++
T Consensus 308 ~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~ 386 (417)
T COG2223 308 FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLL 386 (417)
T ss_pred cccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHH
Confidence 11 1222333332333333333333344577777777 577999999999999999999999999999999 78889999
Q ss_pred HHHHHHHHHHHHHhcccC
Q 008804 522 AAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~ 539 (553)
..+.+++.++.+....+.
T Consensus 387 ~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 387 LAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 888888887666554433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=257.54 Aligned_cols=345 Identities=27% Similarity=0.360 Sum_probs=254.7
Q ss_pred HHHhhhchhhhcccccc-ccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 008804 103 GGLLFGYDIGATSGATI-SLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 181 (553)
Q Consensus 103 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~ 181 (553)
+.++..++.....+.++ .+.++ +|.+..+++++.+++.++..++.++.|+++||+|||+++..+.++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~ 76 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEE-------LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGS 76 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCC-------STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHH
Confidence 34555556666666666 56555 99999999999999999999999999999999999999999999999997
Q ss_pred HHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHh
Q 008804 182 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYG 261 (553)
Q Consensus 182 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~ 261 (553)
+++.++++++.++++|++.|++.+...+...+++.|++|+++|++++++......+|.++++.+++.+.+.. +||+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~~~~ 155 (352)
T PF07690_consen 77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF-GWRWAFL 155 (352)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC-HHCCHHH
T ss_pred HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc-ccccccc
Confidence 777777888899999999999999999999999999999999999999999999999999999999988776 8999999
Q ss_pred hhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccccc
Q 008804 262 LSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 340 (553)
Q Consensus 262 ~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (553)
+.+++.++..++. ++++++++....+ ++ .+ .+ .+.+++.
T Consensus 156 ~~~~~~~~~~il~~~~~~~~~~~~~~~--------~~------------------~~-~~-------------~~~~~~~ 195 (352)
T PF07690_consen 156 ISAILSLIAAILFILFLPEPPPPRERE--------SP------------------KE-SE-------------SKKPKPL 195 (352)
T ss_dssp HHHHHHHHHHHHHHCCC---STTTT----------SS------------------TT-TT---------------HHHCC
T ss_pred cccchhhhhhhhHhhhhhhcccccccc--------cc------------------cc-cc-------------ccccccc
Confidence 9999999987753 4454443210000 00 00 00 0011111
Q ss_pred c-cceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHH-HHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 008804 341 G-SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 418 (553)
Q Consensus 341 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 418 (553)
. .++.+++++.++..++...+..+.. .....+.|.+ .+..+.+...+.+.......+..+++.++.+++.||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (352)
T PF07690_consen 196 KPGFKSLFKNPVLWILLIAFFLFFFVF----SGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFG 271 (352)
T ss_dssp CH-CTHHHHHHCCHHHHHHHHHHHHHH----HHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhhhhhhhhHHHHHH----HHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 2556666666663333333332222 2477778887 45566662278888899999999999999999999999
Q ss_pred CchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHH
Q 008804 419 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 498 (553)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 498 (553)
+++..........+..+.+...... .+...... ..++.+.......+....+..+..|++++|++.|+.+...++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 348 (352)
T PF07690_consen 272 RRRRLLIAILLLILGALGLLLLPFS--SSPVWLII-ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGG 348 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSHHH--CHHHHHHH-HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9887777666666655555432221 22233333 33333444444566777999999999999999999999999999
Q ss_pred HHHH
Q 008804 499 AIVT 502 (553)
Q Consensus 499 ~~~~ 502 (553)
.++|
T Consensus 349 ~igP 352 (352)
T PF07690_consen 349 IIGP 352 (352)
T ss_dssp HHHH
T ss_pred HHCC
Confidence 9887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=252.32 Aligned_cols=343 Identities=34% Similarity=0.417 Sum_probs=283.7
Q ss_pred HHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 008804 101 ALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALG 180 (553)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~ 180 (553)
.+..+..+++.....+..+.+.++ +|.+..+.+++.+.+.++..++.+++|+++||+|||+.+..+.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~ 77 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAED-------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALG 77 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHH
Confidence 344455666666666777776665 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHH
Q 008804 181 ALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 260 (553)
Q Consensus 181 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f 260 (553)
.+++.+.++++.++++|++.|++.+...+...+++.|++|+++|++++++......+|..+++.+++.+.+.. +||+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~ 156 (352)
T cd06174 78 SLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL-GWRWLF 156 (352)
T ss_pred HHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988877 899999
Q ss_pred hhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccccc
Q 008804 261 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 340 (553)
Q Consensus 261 ~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (553)
++.+++.++..+..++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 174 (352)
T cd06174 157 LILAILGLLLALLLLFLL-------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 999988887766554431
Q ss_pred ccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHc-CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 008804 341 GSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR 419 (553)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 419 (553)
|.++...+.. +...........+.|.+.++. +.+. .+.+.......++.+++.++.+++.||++|
T Consensus 175 ---------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (352)
T cd06174 175 ---------RLLLLLALAF----FLLSFGYYGLLTYLPLYLQEVLGLSA-AEAGLLLSLFGLGGILGALLGGLLSDRLGR 240 (352)
T ss_pred ---------HHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222233222 223333345677888888776 6655 788999999999999999999999999999
Q ss_pred ch-hhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHH
Q 008804 420 RP-LLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 498 (553)
Q Consensus 420 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 498 (553)
|+ .+..+..+..++.+.+... . .........+..+.......+....+..|..|+++|++.+|+.+....++.
T Consensus 241 ~~~~~~~~~~~~~i~~~~~~~~-----~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (352)
T cd06174 241 RRLLLLIGLLLAALGLLLLALA-----P-SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGG 314 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh-----c-cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 99 8888888877777766542 2 233334444445555556667778999999999999999999999999999
Q ss_pred HHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHH
Q 008804 499 AIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIV 533 (553)
Q Consensus 499 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 533 (553)
.+++.+.|.+.+..++...+++.+++.+++.++.+
T Consensus 315 ~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 315 ALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999998888887776543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-30 Score=253.04 Aligned_cols=337 Identities=17% Similarity=0.158 Sum_probs=244.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
+|.|..++|++.+.+.++..+..++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|+++|++.+...+..
T Consensus 41 ~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~ 120 (400)
T PRK11646 41 LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPR 120 (400)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhcc
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQ 290 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~ 290 (553)
.+++.|++|+++|++++++......+|..+||.+++.+. .. +||+.|++.+++.++..++. +++||.+.
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~-g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-------- 190 (400)
T PRK11646 121 TALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY-DFRLVCATGAVLFVLAAAFNAWLLPAYKL-------- 190 (400)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHHHHHHHhCCcccc--------
Confidence 999999999999999999999999999999999999988 55 99999999888877665443 44443210
Q ss_pred CCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhCh
Q 008804 291 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 370 (553)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (553)
++. .++.+.+++++++++.++...+.....+...
T Consensus 191 -----~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 224 (400)
T PRK11646 191 -----STV-------------------------------------RTPVREGMTRVLRDKRFVTYVLTLTGYYMLA---- 224 (400)
T ss_pred -----ccc-------------------------------------chhhHHHHHHHHcCchHHHHHHHHHHHHHHH----
Confidence 000 0000112345566666554443322222211
Q ss_pred hhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhh-cccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchH
Q 008804 371 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKV-DDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 449 (553)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (553)
.....+.|.++++.+.++ .+.+.......+....+....+++. ||++.++.+..+.++.+++...+... ++.+
T Consensus 225 ~~~~~~~p~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~ 298 (400)
T PRK11646 225 VQVMLMLPIMVNDIAGSP-SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-----SNLQ 298 (400)
T ss_pred HHHHHhhhhhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----hhHH
Confidence 123456788888876655 6777777777666665555555555 45666666666666666655544321 2222
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC----chhHHHHHHHHH
Q 008804 450 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG----AENIFLLFAAIA 525 (553)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~ 525 (553)
....... ..+.......|...++..+..|+++||+++|+.+....+|..++|.+.|.+.|..+ ....+++.+++.
T Consensus 299 ~~~~~~~-l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~ 377 (400)
T PRK11646 299 QLFTLIC-LFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIG 377 (400)
T ss_pred HHHHHHH-HHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHH
Confidence 2222222 22222233445556888899999999999999999999999999999999998753 345555555555
Q ss_pred HHHHHH
Q 008804 526 FLAVLF 531 (553)
Q Consensus 526 ~~~~~~ 531 (553)
+++.+.
T Consensus 378 ~~~~~~ 383 (400)
T PRK11646 378 LITLLA 383 (400)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=253.18 Aligned_cols=340 Identities=16% Similarity=0.157 Sum_probs=250.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
+|.+..++|++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|.+.+...+..
T Consensus 38 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 117 (395)
T PRK10054 38 YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVL 117 (395)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998888888889
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhcc
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQ 290 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~ 290 (553)
.++..|.+|+++|++++++.....++|.+++|.+++.+.. . +|+..|++.+++.++..++. +++||+++
T Consensus 118 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~-g~~~~f~~~~~~~~i~~i~~~~~~~~~~~-------- 187 (395)
T PRK10054 118 KAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q-SINLPFWLAAICSAFPLVFIQIWVQRSEK-------- 187 (395)
T ss_pred HHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccCcHHHHHHHHHHHHHHHHHHHHhcccc--------
Confidence 9999999999999999999999999999999999998775 4 89999999888877765544 44554321
Q ss_pred CCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhCh
Q 008804 291 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 370 (553)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (553)
+++.+ + ++..+.++.+|++.++...+...+..+....
T Consensus 188 -----~~~~~-----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 224 (395)
T PRK10054 188 -----AIATE-----------------------------------T-GSVWSPSVLLQDKALLWFTCSGFLASFVSGA-- 224 (395)
T ss_pred -----ccccc-----------------------------------h-hhhhhhhhhccCceehHHHHHHHHHHHHHHH--
Confidence 00000 0 0000124567778777666544443333222
Q ss_pred hhHHHhHHHHHH---HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCc
Q 008804 371 PSVLYYAGPILQ---SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF 447 (553)
Q Consensus 371 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (553)
...+.+.+.. +.+.+. ...+.......+......+..+++.||.++|+.+..+..+..++...+... .+
T Consensus 225 --~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~ 296 (395)
T PRK10054 225 --FASCISQYVMVVADSDFAE-KVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-----GN 296 (395)
T ss_pred --hhhhHHHHHHHhcccchHH-HHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-----ch
Confidence 2223333332 223333 455666666666667777888999999999998888877666666555431 11
Q ss_pred hHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHH
Q 008804 448 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFL 527 (553)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 527 (553)
+...........+.......|.....+.+..|++.++++.+..+ ...+|..+||.+.|.+.|+.|+...|++.+++..+
T Consensus 297 ~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~ 375 (395)
T PRK10054 297 SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA 375 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence 22222222333333333445566678889999999999988765 57789999999999999999988888877666665
Q ss_pred HHHHHH
Q 008804 528 AVLFIV 533 (553)
Q Consensus 528 ~~~~~~ 533 (553)
+.++..
T Consensus 376 ~~~~~~ 381 (395)
T PRK10054 376 AWLLML 381 (395)
T ss_pred HHHHHH
Confidence 555444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=254.83 Aligned_cols=392 Identities=20% Similarity=0.208 Sum_probs=267.0
Q ss_pred cccccchhhhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008804 84 NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF 163 (553)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr 163 (553)
..++..+|..+.++.++++..+....+...++.....- +.+| .+....+.+++.++++++|+++.+++|.+.||
T Consensus 34 ~~~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g----~~ed--l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r 107 (495)
T KOG2533|consen 34 EERKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSG----LKED--LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR 107 (495)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcC----Cccc--cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh
Confidence 34455666666777777777777777755544433332 2233 88999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHH
Q 008804 164 LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY 243 (553)
Q Consensus 164 ~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 243 (553)
++-.+.+....+++++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.++|.
T Consensus 108 ~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~gg 187 (495)
T KOG2533|consen 108 FPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGG 187 (495)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHH
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhccc------CCCCchHHHHhhhHHHHHHHHH-HhcccCCchh--HHHHhhccCCCchhhhHHHHHHHHHhHhcCCC
Q 008804 244 FVGSFQI------NAVGGWRYMYGLSAPLALLMGI-GMWSLPPSPR--WLLLRAVQGKGSLQEYKEQAISALGKLRRRPP 314 (553)
Q Consensus 244 ~l~~~l~------~~~~~wr~~f~~~~~~~~~~~i-~~~~~~e~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (553)
+++..+. ... ||||.|++.++++++..+ +++++|+.|. |.. + .+|..-..++++..+.
T Consensus 188 liA~g~~~~~~~~~~~-gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl-----------~-~~ek~~~~~~~~~~~~ 254 (495)
T KOG2533|consen 188 LIAYGVFKLNGSGGLA-GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFL-----------T-DEEKELVVERLRESPS 254 (495)
T ss_pred HHHHHhhhhcCCCCcC-CceeehhHHHHHHHHHHheEEEEecCChhhcccc-----------c-hHHHHHHHHHHHhccC
Confidence 9998853 223 999999999999998776 5577999886 111 1 1111111122221111
Q ss_pred CCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhH
Q 008804 315 GDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADAT 393 (553)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 393 (553)
.+ ..++.++..+++.+++|..|.+.+..++... ..+.+.+|+|.++.+ .+++. .++.
T Consensus 255 ~~-----------------~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~l----v~~~~~~~lpl~l~~~~~~s~-~~a~ 312 (495)
T KOG2533|consen 255 GG-----------------IENKFKWKGFKEALKDPGVWPFSLCYFFLKL----VNYGFSYWLPLYLKSNGGYSE-LQAN 312 (495)
T ss_pred CC-----------------cccccCHHHHHHHHhchhHHHHHHHHHHHhh----ccccHHHHHHHHHHcCCCcCh-HHhc
Confidence 11 1111455667888999988887754444433 445689999999988 34665 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc----CCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccc
Q 008804 394 RVSVVIGVFKLVMTWIAVAKVDDL----GRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 469 (553)
Q Consensus 394 ~~~~~~~~~~~~~~~~~g~l~d~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (553)
.+.++..++++++.+++|+++||+ .+|........+..+........ ..... .....++..........+.
T Consensus 313 ~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~----~~~~~-~~~~~~~~~~~~~~~~~~~ 387 (495)
T KOG2533|consen 313 LLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA----AAVLP-GAYGAFLIGPYGLIATAII 387 (495)
T ss_pred cccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh----hccch-HHhHHHHhcchhhHHHHHH
Confidence 999999999999999999999994 44544444444433333222211 11111 1111112222222222334
Q ss_pred hhhhhcccCCccch-hhHHHHHHHHHHHHHHHHHHHhHH-hHHhhCchhHHHHH
Q 008804 470 SWLMVSEIFPLRTR-GRGISLAVLTNFGSNAIVTFAFSP-LKELLGAENIFLLF 521 (553)
Q Consensus 470 ~~~~~~~~~p~~~~-~~~~g~~~~~~~~g~~~~~~~~g~-l~~~~g~~~~~~~~ 521 (553)
.....++....+.+ -+..++.......++.++|.+.-. ....+++...|...
T Consensus 388 ~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 388 ALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 44555555444443 344444444455555555544433 33345666777333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-30 Score=256.55 Aligned_cols=371 Identities=15% Similarity=0.071 Sum_probs=260.1
Q ss_pred HHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhHH-HHHHHHHH
Q 008804 104 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKRE-LIIAAVLY 177 (553)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grk~~-~~~~~~~~ 177 (553)
++..|......+..++....+ .|.+..++|.+ +.....+ ++.+++|+++||+ |||+. ++.+.++.
T Consensus 21 ~~~~gl~~~~~~~~l~~~l~~-------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 21 GFASGLPLALTSGTLQAWMTV-------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 345555666666667766655 78899999997 4444444 6899999999999 99885 66777778
Q ss_pred HHHHHHHHhc---chHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCC
Q 008804 178 ALGALTTAYA---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG 254 (553)
Q Consensus 178 ~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~ 254 (553)
+++.+++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+...
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7887777775 4788999999999999999999999999999999999999999999999999999999999887323
Q ss_pred chHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcc
Q 008804 255 GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSY 334 (553)
Q Consensus 255 ~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (553)
|||..|++.+++.++..+..+++||+++.. + +++ . .
T Consensus 172 GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~-------~---~~~-----------------~---~-------------- 207 (491)
T PRK11010 172 GWQGMYWLMAALLIPCIIATLLAPEPTDTI-------P---VPK-----------------T---L-------------- 207 (491)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcccc-------c---ccc-----------------c---h--------------
Confidence 999999999988887766666677754310 0 000 0 0
Q ss_pred ccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHH-HHcCCCCchhhHHHH-HHHHHHHHHHHHHHHH
Q 008804 335 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVS-VVIGVFKLVMTWIAVA 412 (553)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~ 412 (553)
++....+++++++++..+...+...+...... ....+.+.++ ++.|++. .+.+... ....++.+++.+++|+
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~----~~~~~~~~~l~~~~G~s~-~~~g~~~~~~g~i~~iiG~ll~G~ 281 (491)
T PRK11010 208 -EQAVVAPLRDFFGRNNAWLILLLIVLYKLGDA----FAMSLTTTFLIRGVGFDA-GEVGLVNKTLGLLATIVGALYGGI 281 (491)
T ss_pred -hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000123445555655544443333322221 2334455554 5577776 7777776 4556799999999999
Q ss_pred hhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHH
Q 008804 413 KVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL 492 (553)
Q Consensus 413 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 492 (553)
+.||+++|+.+.++.++.++..+.+..... ...+.+......++...+++... +..+++..+..+++.+++.+|+.+.
T Consensus 282 L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~-~~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s 359 (491)
T PRK11010 282 LMQRLSLFRALMIFGILQGVSNAGYWLLSI-TDKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSA 359 (491)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999988877666555554433322111 11222222222222122222222 2335777888898899999999999
Q ss_pred HHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHh
Q 008804 493 TNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT 535 (553)
Q Consensus 493 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 535 (553)
...+|..+++.+.|.+.|..||...|.+.+++.+++.++.+..
T Consensus 360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888888888776665544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-30 Score=250.46 Aligned_cols=359 Identities=17% Similarity=0.126 Sum_probs=260.8
Q ss_pred HHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 008804 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 176 (553)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~ 176 (553)
++++++..+..|+..+..++.++.++++ +|++..+.|++.+.+.+++.+++++.|++.||+|||++++.+.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~-------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l 77 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQA-------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL 77 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 3455666788888888888888888766 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh---cchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCC
Q 008804 177 YALGALTTAY---APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV 253 (553)
Q Consensus 177 ~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~ 253 (553)
++++.+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.+++.+....
T Consensus 78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~ 157 (410)
T TIGR00885 78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN 157 (410)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999988654 4689999999999999999999999999999999999999999999999999999999988764221
Q ss_pred -------------------------CchHHHHhhhHHHHHHHHHHhcc--cCCchhHHHHhhccCCCchhhhHHHHHHHH
Q 008804 254 -------------------------GGWRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISAL 306 (553)
Q Consensus 254 -------------------------~~wr~~f~~~~~~~~~~~i~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (553)
.+||++|++.+++.++..++..+ .||.++ + +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-------------~---~------ 215 (410)
T TIGR00885 158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-------------S---D------ 215 (410)
T ss_pred CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------------c---c------
Confidence 15999999988877776554433 222110 0 0
Q ss_pred HhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCC
Q 008804 307 GKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGF 386 (553)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (553)
+ ++.....+.++++|+|.++...+..+++...+. ....|.+.+.++.+.
T Consensus 216 ---------~------------------~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~----~~~s~l~~y~~~~~~ 264 (410)
T TIGR00885 216 ---------A------------------KQISFSASLSRLARIRHYREGVIAQFFYVGVQI----MCWTFIIQYAVRLIP 264 (410)
T ss_pred ---------c------------------ccccchhhHHHHHhChhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccC
Confidence 0 000001123356777777665555545444432 345677777766432
Q ss_pred C-CchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcC
Q 008804 387 S-AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQIS 465 (553)
Q Consensus 387 ~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (553)
. ....+.........+..+|+++++++.||+++|+.+.++.++..+..++.... . .......+.+..++.+ .
T Consensus 265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-----~-~~~~~~~l~~~glf~s-~ 337 (410)
T TIGR00885 265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-----G-GHVGLYCLTLCSAFMS-L 337 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----C-ChHHHHHHHHHHHHHH-H
Confidence 2 21334445556667889999999999999999998877776666665555431 1 2222333333333333 3
Q ss_pred cccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh------CchhHHHHHHHH
Q 008804 466 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL------GAENIFLLFAAI 524 (553)
Q Consensus 466 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~~~ 524 (553)
..|..++...+..+++.+..+.++.... +|+.+.|++.|.+.|.. +....|++...+
T Consensus 338 ~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 338 MFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 4477788888988876655455555543 99999999999999964 355666654333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=253.69 Aligned_cols=339 Identities=24% Similarity=0.284 Sum_probs=234.3
Q ss_pred CchhHHHHHHHH-----HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHH--------HHHHHHHHH
Q 008804 134 LSAVQLGLVVSG-----SLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG--------VLLVGRLLY 200 (553)
Q Consensus 134 ~s~~~~g~~~s~-----~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~ 200 (553)
.++.+.+.+.+. ..++..+++++.|+++||+|||++++.+.++.+++.++++++++++ .++++|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 455666655543 3344457899999999999999999999999999999999999875 488999999
Q ss_pred HHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhccc--------CCCCchHHHHhhhHHHHHHHHH
Q 008804 201 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI--------NAVGGWRYMYGLSAPLALLMGI 272 (553)
Q Consensus 201 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~--------~~~~~wr~~f~~~~~~~~~~~i 272 (553)
|++.+...+...+++.|++++++|+++.++...+..+|.++++.++..+. ... +||+.|++.+++.++..+
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEW-GWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhcc-chHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876543 234 899999998887776666
Q ss_pred HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccch
Q 008804 273 GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 352 (553)
Q Consensus 273 ~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
....++|++++...+ + +++..+.+.++.+++++.
T Consensus 186 ~~~~~~~~~~~~~~~-------------~---------------------------------~~~~~~~~~~~~~~~~~~ 219 (394)
T TIGR00883 186 LRRNLEETPVFEKAQ-------------E---------------------------------KHKKKRGPIRETLTKHRK 219 (394)
T ss_pred HHHhcCCChhHHHHH-------------h---------------------------------ccccccCCHHHHHHhchH
Confidence 656667765421100 0 000111233444555431
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 431 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 431 (553)
. ..... ...+...........+.|.+++ +.+.+. .+.+.......++.+++.++.+++.||+|||+.+.....+..
T Consensus 220 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 296 (394)
T TIGR00883 220 P-FLLGL-GLVIATTTTFYLITTYLPTYLTQTLGLSA-NSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAA 296 (394)
T ss_pred H-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 1 11111 1122222233346677888884 456665 678888888889999999999999999999998775544443
Q ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHH-HHHHHHHHHHHHHHhHHhHH
Q 008804 432 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKE 510 (553)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~ 510 (553)
+....+.... . ............+..++......+...++..|.+|++.|+++.++. +....+|..++|.+.|.+.+
T Consensus 297 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 297 LLAVPLLMAL-L-DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred HHHHHHHHHH-h-cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 3322111111 1 1122222222333333333334455668899999999999999985 45567888899999999999
Q ss_pred hhC-chhHHHHHHHH
Q 008804 511 LLG-AENIFLLFAAI 524 (553)
Q Consensus 511 ~~g-~~~~~~~~~~~ 524 (553)
..| +...++...++
T Consensus 375 ~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 375 MTGDWYAIGYYLAAL 389 (394)
T ss_pred HcCcchhHHHHHHHH
Confidence 988 65555544443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=249.55 Aligned_cols=333 Identities=20% Similarity=0.251 Sum_probs=236.0
Q ss_pred hhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchH
Q 008804 111 IGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL 190 (553)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~ 190 (553)
.....+.++.+.++ +|+++.+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+++++
T Consensus 7 ~~~~~p~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (377)
T PRK11102 7 IDMYLPALPVIAAD-------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI 79 (377)
T ss_pred HHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence 33445666666655 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHH
Q 008804 191 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLM 270 (553)
Q Consensus 191 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~ 270 (553)
+.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+.. +||+.|++.+++.++.
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF-SWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988876 9999999988888776
Q ss_pred HHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccc
Q 008804 271 GIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG 349 (553)
Q Consensus 271 ~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (553)
.++. +++||+++. +++ .+.+ .+ +...++++.+++
T Consensus 159 ~~~~~~~~~~~~~~-------------~~~-------------~~~~---~~----------------~~~~~~~~~~~~ 193 (377)
T PRK11102 159 AALVFFFIPETLPK-------------ERR-------------QPFH---LR----------------TTIRNFASLFRH 193 (377)
T ss_pred HHHHHHhCCccCcc-------------ccc-------------CCCC---hH----------------HHHHHHHHHHcC
Confidence 5544 556664320 000 0000 00 000123345666
Q ss_pred cchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHH
Q 008804 350 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 428 (553)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 428 (553)
+..+...+...+... +......+.|.++. ..+.+. .+.+.......++.+++.++.+++.||+|+|+.+..+..
T Consensus 194 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~ 268 (377)
T PRK11102 194 KRVLGYMLASGFSFA----GMFSFLTAGPFVYIELNGVSP-QNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLW 268 (377)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHcCHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 655544433222222 22234445555554 457765 788999999999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHH-HHHHHHHHH
Q 008804 429 GIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF-GSNAIVTFA 504 (553)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~ 504 (553)
+..+..+.+...... +...+...+...+..+... ...+.......|..| +.++++.++.+.... +|..+++.+
T Consensus 269 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 269 IQFIMGIWLVVSALL-DLGFWALVVGVAAFVGCVS-MISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH-HhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 544433333222111 1122222222222222222 222233355677766 789999998877643 444555544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=241.07 Aligned_cols=336 Identities=15% Similarity=0.090 Sum_probs=224.5
Q ss_pred ccCchhHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKREL-IIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grk~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 209 (553)
+|++.+++|++.+...+ ++.++.++.|+ +||+||||.+ +.+.++.+++.++.+++++++.+++.+.+.|...+...+
T Consensus 46 ~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 124 (393)
T PRK15011 46 VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANP 124 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 89999999999877655 55555555555 9999999875 556666678888888999999887766655555567788
Q ss_pred hhhhHhhhccccccc--hhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCCchhHHHH
Q 008804 210 GAPLYIAETCPSQIR--GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLL 286 (553)
Q Consensus 210 ~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~ 286 (553)
...+++.++.++++| +...++.+.+.++|.++||++++.+.+.. |||..|++.++.+++..+.. +++||.++-
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (393)
T PRK15011 125 QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF-SFTVMYLSAAVAFIVCGVMVWLFLPSMRKE--- 200 (393)
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHhhcCccCCC---
Confidence 888888888876655 34557888899999999999999988877 99999999988877766544 557765420
Q ss_pred hhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceeccccc-chhHHHHHHHHHHHH
Q 008804 287 RAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP-NLKAFIIGGGLVLFQ 365 (553)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 365 (553)
++.+ . + + .....+++ ..+.......+.+.
T Consensus 201 ----------~~~~---------------~-------------------~--~---~~~~~~~~~~~~~~~~~~~~~~~- 230 (393)
T PRK15011 201 ----------LPLA---------------T-------------------G--T---LEAPRRNRRDTLLLFVICTLMWG- 230 (393)
T ss_pred ----------Cccc---------------c-------------------c--c---ccccccccccHHHHHHHHHHHHH-
Confidence 0000 0 0 0 00000111 11222221112211
Q ss_pred HhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhh
Q 008804 366 QITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL 444 (553)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (553)
.+..+..+.|.++++ .+.+. .+.+.+.....++.+++.++.|+++||++||+.+..+.....+....+..
T Consensus 231 ---~~~~~~~~~p~~l~~~~~~~~-~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~----- 301 (393)
T PRK15011 231 ---TNSLYIINMPLFIINELHLPE-KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM----- 301 (393)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-----
Confidence 222345567777754 56665 67777777777788889999999999999998877665544443322211
Q ss_pred cCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHH
Q 008804 445 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 524 (553)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 524 (553)
.++.+..+....+.....+.. .+....+..|..| +.++++.++.+...++|..++|.+.|.+.+..|++..|.+.+++
T Consensus 302 ~~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~ 379 (393)
T PRK15011 302 AHSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVM 379 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 122222222222221122111 2233466788888 45999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHH
Q 008804 525 AFLAVLFIV 533 (553)
Q Consensus 525 ~~~~~~~~~ 533 (553)
.+++.++.+
T Consensus 380 ~~~~~~~~~ 388 (393)
T PRK15011 380 IIATLFCLL 388 (393)
T ss_pred HHHHHHHHH
Confidence 766655444
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=243.52 Aligned_cols=357 Identities=15% Similarity=0.096 Sum_probs=260.1
Q ss_pred HHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH----HHHHHHHH
Q 008804 103 GGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL----IIAAVLYA 178 (553)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~----~~~~~~~~ 178 (553)
..+.+.+..+...|.+|.+.++ +|.|..++|++.+++.+...++++++|+++||+|||+.. ..+..+..
T Consensus 12 ~~~~~~~~~~~~~p~l~~~l~~-------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 12 GFFGYFCAYGIFLPFFPAWLKG-------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3444555556777777777766 899999999999999999999999999999999985433 22222222
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHH
Q 008804 179 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 258 (553)
Q Consensus 179 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~ 258 (553)
+ .++.++++++.+++.|+++|.+.+...|...++..++ +++|+++.+....+.++|.+++|++++.+.+.. |||.
T Consensus 85 ~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~~~ 159 (382)
T TIGR00902 85 A--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DEQN 159 (382)
T ss_pred H--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-ChhH
Confidence 2 3445688999999999999999998899988887765 467899999999999999999999999999888 9999
Q ss_pred HHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccc
Q 008804 259 MYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 338 (553)
Q Consensus 259 ~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (553)
.|++.++..++..+.. .++|+++ + +++.+ .++..
T Consensus 160 ~f~~~~~~~~~~~~~~-~~~~~~~--------~----~~~~~---------------------------------~~~~~ 193 (382)
T TIGR00902 160 ILAILTAGLAFMLIGF-LIKPTIP--------P----KDAIP---------------------------------EDESQ 193 (382)
T ss_pred HHHHHHHHHHHHHHHH-HcCCCCC--------C----Ccccc---------------------------------ccccc
Confidence 9988766533333333 3333321 0 00000 00001
Q ss_pred ccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccC
Q 008804 339 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG 418 (553)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 418 (553)
+...+++++|+|+++...+...+..... .....+.|.++++.|.+. ...+.......++.+++.++.+++.||++
T Consensus 194 ~~~~~~~~l~~~~~~~~l~~~~l~~~~~----~~~~~~~~~~l~~~g~s~-~~~g~l~~~~~~~~i~~~~~~~~l~~r~g 268 (382)
T TIGR00902 194 GDSAFIALLKNPMNLRFLAAVCLIQGAH----AAYYGFSAIYWQAAGISA-SATGLLWGIGVLAEIIIFAFSNKLFQNCS 268 (382)
T ss_pred cchhHHHHHcChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHhHHHHhhCC
Confidence 1123557788888877766555544433 235567788888888877 78888888899999999999999999999
Q ss_pred CchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHH-HHHHH
Q 008804 419 RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVL-TNFGS 497 (553)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g 497 (553)
+|+.+.++.++..+....+... ++.+..+....+-...+ ....+....++.+. |++.++++.++++. ...+|
T Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~q~l~g~~~-~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g 341 (382)
T TIGR00902 269 ARDLLLISAIACVGRWAIIGAI-----EAFPLIFLLQILHCGTF-AVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGL 341 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-----hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHH
Confidence 9999998888888887766542 23333333333333333 33444455788887 98999999999874 56789
Q ss_pred HHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 498 NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 498 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
..+++.+.|.+.|..|+ ..|++.+++.+++.+
T Consensus 342 ~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 342 IAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 99999999999999985 667777777765544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=243.57 Aligned_cols=336 Identities=15% Similarity=0.112 Sum_probs=238.7
Q ss_pred hhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch
Q 008804 110 DIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG 189 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~ 189 (553)
......+.++.+.++ +|.++.+.+++.+++.+++.++.+++|+++||+|||+++..+.++.+++.+++.++++
T Consensus 23 ~~~~~~p~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~ 95 (394)
T PRK11652 23 AQTIYVPAIADMARD-------LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS 95 (394)
T ss_pred HHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 444555666666655 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHH
Q 008804 190 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 269 (553)
Q Consensus 190 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~ 269 (553)
++.+++.|++.|++.+...+....++.|++++++|+++.++...+..+|..++|.+++.+.+.. +||+.|++.+++.++
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~~f~~~~~~~~~ 174 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGAG 174 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHH
Confidence 9999999999999999888888889999999999999999999999999999999999988776 899999998887766
Q ss_pred HHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceeccc
Q 008804 270 MGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQ 348 (553)
Q Consensus 270 ~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (553)
..+ ..+++||+++. +++++ +....++++++
T Consensus 175 ~~~~~~~~~~~~~~~------------~~~~~-------------------------------------~~~~~~~~~~~ 205 (394)
T PRK11652 175 VTFSMARWMPETRPA------------DARRT-------------------------------------RVLASYRTLLS 205 (394)
T ss_pred HHHHHHHhCCccCcc------------ccchh-------------------------------------HHHHHHHHHHc
Confidence 554 34556765420 00000 00112334566
Q ss_pred ccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHH
Q 008804 349 GPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 427 (553)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 427 (553)
++.++...+........ ...+..+.+.++++ .+.+. .+.++......++.+++.++.+++.||.+++.. ...
T Consensus 206 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~ 278 (394)
T PRK11652 206 NRRFNCYLLMLIGTLAG----IAVFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSV 278 (394)
T ss_pred ChHHHHHHHHHHHHHHH----HHHHHHhChHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 66666544433222221 12234445556665 56665 677888888888888899999999999883322 222
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 008804 428 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 507 (553)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 507 (553)
....++.+.+...........+......++ .+.......|....+..|..| ++++++.++.+....+|+.+++.+.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~ 356 (394)
T PRK11652 279 ICCLLAGLLMWIPGWFGVMNVWTLLVPAAL-FFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAM 356 (394)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222211111111122222322222 333333345566677778877 678999999999999999999998887
Q ss_pred hHHh
Q 008804 508 LKEL 511 (553)
Q Consensus 508 l~~~ 511 (553)
+.+.
T Consensus 357 ~~~~ 360 (394)
T PRK11652 357 LPQT 360 (394)
T ss_pred ccCC
Confidence 7654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-29 Score=240.36 Aligned_cols=332 Identities=19% Similarity=0.135 Sum_probs=242.3
Q ss_pred hhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHH
Q 008804 112 GATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 191 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~ 191 (553)
...++.+|.+.++ +|.+..+.|++.+++.+++.++.++.|+++||+|||+++.++.++.+++.+++ ..++++
T Consensus 17 ~~~~~~lp~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSA-------LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA 88 (355)
T ss_pred ccCcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH
Confidence 3456666666665 99999999999999999999999999999999999999999999998888887 788999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCC-chHHHHhhhHHHHHHH
Q 008804 192 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLM 270 (553)
Q Consensus 192 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~ 270 (553)
.+++.|++.|++.+...+....++.|+++ ++|++++++.+.+..+|..+++.+++.+.+... +||+.|.+.+++.++.
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999988888889999986 689999999999999999999999888776542 4999998877655443
Q ss_pred HHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceeccccc
Q 008804 271 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 350 (553)
Q Consensus 271 ~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (553)
.+ .++|+.++ ++ .+ +++......++++|++
T Consensus 168 ~~--~~~~~~~~-------------~~--------------~~---------------------~~~~~~~~~~~~~~~~ 197 (355)
T TIGR00896 168 LL--AWIPQVRR-------------RV--------------AA---------------------NQTTTRLTPVRIWRSP 197 (355)
T ss_pred HH--HHhhhhcc-------------cc--------------CC---------------------CCCCCCCCCchhhcCH
Confidence 32 22333211 00 00 0000112345677777
Q ss_pred chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccC-CchhhHhHHHH
Q 008804 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG-RRPLLIGGVCG 429 (553)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~ 429 (553)
.++...+...+..... .....|.|.++++.+.+. .+.+.......++.++++++.|++.||++ ||+.+..+.++
T Consensus 198 ~~~~~~~~~~~~~~~~----~~~~~~lp~~~~~~g~~~-~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~ 272 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLY----YSLIGWLPAILISHGASA-ATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVL 272 (355)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Confidence 7665544333322222 346678898988887776 78889999999999999999999999994 55566666666
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcc-cCCccchhhHHHHHHHHHHHHHHHHHHHhHHh
Q 008804 430 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSE-IFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 508 (553)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 508 (553)
.+++.+.+.+.. .... .. . .+..+.......+.......+ ..+++.++...++.+..+.++..++|.+.|.+
T Consensus 273 ~~~~~~~~~~~~----~~~~-~~-~-~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 273 QLVGLCGLLFAP----MHGL-WA-W-ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HHHHHHHHHHhh----hhHH-HH-H-HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555444321 1111 11 1 222333333444444444444 33456778999999999999999999999999
Q ss_pred HHhhCc
Q 008804 509 KELLGA 514 (553)
Q Consensus 509 ~~~~g~ 514 (553)
.|+.|.
T Consensus 346 ~~~~g~ 351 (355)
T TIGR00896 346 HDISGN 351 (355)
T ss_pred HHHhcc
Confidence 998873
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=244.63 Aligned_cols=352 Identities=16% Similarity=0.094 Sum_probs=226.4
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcc-----hHHHHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA---YAP-----GLGVLLVGRLLYGLG 203 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~---~~~-----~~~~l~~~r~l~G~~ 203 (553)
+|++..++|++.+++.+++.++++++|+++||+|||++++++..+.+++..... .++ .+...++++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999887766655433221 111 111122233333333
Q ss_pred hhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhH
Q 008804 204 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRW 283 (553)
Q Consensus 204 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~ 283 (553)
.....+....+..+ . .+++++.++......++|..+++++++.+.+. +|++.|++.++++++..++.++++++++-
T Consensus 121 ~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 196 (420)
T PRK09528 121 FLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQINFWLGSGSALILLVLLFFAKPDAPS 196 (420)
T ss_pred hccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchHhHHHHHHHHHHHHHHHhcccccccc
Confidence 33333333333322 2 24577888999999999999999999988764 89999999988888777666554332210
Q ss_pred HHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHH
Q 008804 284 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 363 (553)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (553)
+.+.++.. ..+ +++.+....++.+|+|.++...+......
T Consensus 197 ------------~~~~~~~~-------~~~---------------------~~~~~~~~~~~~l~~~~~~~l~l~~~~~~ 236 (420)
T PRK09528 197 ------------TAKVANAL-------GAN---------------------ASAVSLKDALALLKLPKFWFLVLYVIGVA 236 (420)
T ss_pred ------------hhhhccch-------hcc---------------------cccccHHHHHHHccCCCeEeehHHHHHHH
Confidence 00000000 000 00001112335667777665444332222
Q ss_pred HHHhhChhhHHHhHHHHHHH----cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHH
Q 008804 364 FQQITGQPSVLYYAGPILQS----AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 439 (553)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 439 (553)
.... ....+.|.++.+ .+.+. ...+.+.....++..++.++.|++.||+++|+.+..+.++.++..+++.+
T Consensus 237 ~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 237 CFYD----VFDQQFPNFFASFFATPEQGT-RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHH----HHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh
Confidence 2211 122233443332 23333 56788888888888999999999999999999988887777776665543
Q ss_pred HHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHH-HHHHHHHHHHHHHHHhHHhHHhhCchhHH
Q 008804 440 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL-AVLTNFGSNAIVTFAFSPLKELLGAENIF 518 (553)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 518 (553)
. .+.+..+ ...+..+.......+....+..+.+|++.+++..+. .++...+|.++++.+.|.+.|..|++..|
T Consensus 312 ~-----~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f 385 (420)
T PRK09528 312 A-----TGPLEVS-ILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTY 385 (420)
T ss_pred c-----ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Confidence 1 2333332 222333322222233344677888899999888765 57778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 008804 519 LLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~ 538 (553)
.+.+++.++..++.++..++
T Consensus 386 ~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 386 LILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99888887777666655554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=241.96 Aligned_cols=352 Identities=13% Similarity=0.081 Sum_probs=244.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR-KRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr-k~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
+|++..|+|++.+++.++..++++++|+++||+|| |+++.++.++.+++..++.+.++++.+++.|++.|++.+...+.
T Consensus 33 ~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (418)
T TIGR00889 33 LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIAL 112 (418)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHH
Confidence 89999999999999999999999999999999965 88889999999899999999999999999999999988777776
Q ss_pred hhhHhhhc--------cccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchh
Q 008804 211 APLYIAET--------CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPR 282 (553)
Q Consensus 211 ~~~~i~~~--------~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~ 282 (553)
..++...+ .....|.+.+| .+|.++|+.+++.+.... .|+ +|++.+++.++..++.+++||+|+
T Consensus 113 ~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~-~~~-~f~~~~~~~~~~~~~~~~~~e~~~ 184 (418)
T TIGR00889 113 TNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL-SNI-QLYITAGSSALLGVFALTLPDIPV 184 (418)
T ss_pred HHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-hhH-HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 66554322 22233455554 468888888888763322 455 455666666665555667787653
Q ss_pred HHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHH
Q 008804 283 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 362 (553)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (553)
- + ++++ .+ .++....+.++++|++.++..++..++.
T Consensus 185 ~--------~----~~~~--------------~~------------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 220 (418)
T TIGR00889 185 A--------K----STAK--------------MS------------------IKVMLGLDAFILFKNKRMAIFFFFSMLL 220 (418)
T ss_pred C--------c----cccc--------------cC------------------HHHHhhhhHHHHhcCCCeeeHHHHHHHH
Confidence 0 0 0000 00 0000011233467777766655544443
Q ss_pred HHHHhhChhhHHHhHHHHHHHcCCCC-------chhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHH
Q 008804 363 LFQQITGQPSVLYYAGPILQSAGFSA-------AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLL 435 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 435 (553)
..... ....+.+.++++.+.+. ....+.......+..+++.+..+++.||+|+|+.+..+.++.+++..
T Consensus 221 ~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~ 296 (418)
T TIGR00889 221 GAPLQ----ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFG 296 (418)
T ss_pred HhHHH----HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33221 24455566777766442 14568888888889999999999999999999999998887777665
Q ss_pred HHHHHHHhhcCc-hHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHH-HHHHHHHHHHHHHhHHhHHhh-
Q 008804 436 LLSAYYKILGGF-PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVTFAFSPLKELL- 512 (553)
Q Consensus 436 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~- 512 (553)
++.... ... ....+....++.+.......+....++.|.+|++.|++++|+.+ ....+|.+++|.+.|.+.+..
T Consensus 297 l~~~~~---~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 297 FFAYGD---PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred HHHHcC---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 554310 111 12222222333333333334555578899999999999999997 567899999999999999985
Q ss_pred -----CchhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008804 513 -----GAENIFLLFAAIAFLAVLFIVRTVPETKGL 542 (553)
Q Consensus 513 -----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (553)
||+..|.+.+++.++++++.+++.+++++.
T Consensus 374 ~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 374 AYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 478888888888888888788878776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=238.83 Aligned_cols=372 Identities=18% Similarity=0.091 Sum_probs=258.1
Q ss_pred HHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhH-HHHHHHHHH
Q 008804 104 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKR-ELIIAAVLY 177 (553)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grk~-~~~~~~~~~ 177 (553)
++..|+..+.....+|...++ .|++.+++|++..+... .+..+++|+++||+ |||| +++++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~-------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~ 78 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTV-------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGL 78 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHH
Confidence 456677777777788887776 79999999999877776 69999999999999 8765 788888888
Q ss_pred HHHHHHHHhc---chHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCC
Q 008804 178 ALGALTTAYA---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG 254 (553)
Q Consensus 178 ~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~ 254 (553)
+++..++++. .+++.+++..++.++..+...++..+++.|++|+++|+++.++...+..+|.++++.++..+.+...
T Consensus 79 ~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~ 158 (402)
T PRK11902 79 AASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVL 158 (402)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 8888887776 4578888888888999999999999999999999999999999999999999999999988877534
Q ss_pred chHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcc
Q 008804 255 GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSY 334 (553)
Q Consensus 255 ~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (553)
|||..|++.+++.++..+..+++||+++.. ++.++. .+
T Consensus 159 gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~------------~~~~~~-----------------~~------------- 196 (402)
T PRK11902 159 GWGNTYLLMAGLMLAGALTTLWAPEPEVPA------------RPPRSL-----------------GE------------- 196 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcccc------------cccchh-----------------HH-------------
Confidence 899999999988877666556667654310 000000 00
Q ss_pred ccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHH-HHHHHHHHHHHHh
Q 008804 335 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIAVAK 413 (553)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l 413 (553)
+....+++++|+|.++..++...+....... ......+.+.++.|.+. .+.+......+ ++.+++.++++++
T Consensus 197 ---~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~---~~~~~~~~l~~~~G~~~-~~~g~~~~~~~~~~~i~g~~~~g~l 269 (402)
T PRK11902 197 ---AVVGPLRDFFSRRGAWALLLLIVLYKLGDAF---AGSLSTTFLIRGAGFSA-GEVGIVNKTLGLAATIVGALAGGTL 269 (402)
T ss_pred ---HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHH---HHHHHHHHHHHhcCCCH-HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 0011245677888877666544444333221 11222344445577776 67777765544 5688999999999
Q ss_pred hcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHH---HHHHHHhcCcccchhhhhcccCCccchhhHHHHH
Q 008804 414 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALL---LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA 490 (553)
Q Consensus 414 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 490 (553)
.||+++|+.+..+..+..+..+.+...... .++.+....... +..+............++.+.+|.+. .++.
T Consensus 270 ~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~ 344 (402)
T PRK11902 270 MVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALL 344 (402)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHH
Confidence 999999988776666555544333222111 122232222221 22222233334444566677766444 4555
Q ss_pred HHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhccc
Q 008804 491 VLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 491 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
+....++..+++.+.|.+.|..|+...|.+.+++.+++.++.+...+.
T Consensus 345 ~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 345 SALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556677777777889999999999999998888887776665544433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-28 Score=236.20 Aligned_cols=354 Identities=16% Similarity=0.099 Sum_probs=248.4
Q ss_pred HhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----HHHHHHHHHHHHH
Q 008804 105 LLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK----RELIIAAVLYALG 180 (553)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk----~~~~~~~~~~~i~ 180 (553)
+.+....+...+.++...++ +|.|..++|++.+++.++..++++++|+++||+||| +.+.++..+. .
T Consensus 14 ~~~~~~~g~~~p~l~~~l~~-------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~ 84 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLKG-------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A 84 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHh-------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence 33334456666777777766 899999999999999999999999999999999984 3333322222 2
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHH
Q 008804 181 ALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMY 260 (553)
Q Consensus 181 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f 260 (553)
...+..++++|.+++.|++.|++.+...+...+++.++ .++|+++.+......++|..+||++++++.+.. |||..|
T Consensus 85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~-g~~~~f 161 (382)
T PRK11128 85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF-GEQAIL 161 (382)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc-ChhHHH
Confidence 23344568999999999999999998999888887776 356888899999999999999999999998888 999999
Q ss_pred hhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccccc
Q 008804 261 GLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSE 340 (553)
Q Consensus 261 ~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (553)
++.++..++..+..++.||.++ +++.+ ++.++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~---------------------------------~~~~~~~ 195 (382)
T PRK11128 162 WILTAGVASMLLGQLLRPTIMP-------------QGESR---------------------------------QQESAGW 195 (382)
T ss_pred HHHHHHHHHHHHHHHccCCCCC-------------ccccc---------------------------------ccccccc
Confidence 9888665555444444444221 00000 0000112
Q ss_pred ccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCc
Q 008804 341 GSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR 420 (553)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 420 (553)
.++++++|+|.++...+..++...... ....+.|.+.++.|.+. ...+.......++.++..++.+++.||+++|
T Consensus 196 ~~~~~i~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~ 270 (382)
T PRK11128 196 PAWKALLKEPTVWRFLLCVSLLQGSHA----AYYGFSAIYWQAAGYSA-STIGYLWSLGVVAEVLIFAFSNRLFRRWSAR 270 (382)
T ss_pred chHHHHHcChhHHHHHHHHHHHHHHhH----hHHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 346678888888776655444443332 34456677777888776 6788888888889999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHH-HHHHHHHH
Q 008804 421 PLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNA 499 (553)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~ 499 (553)
+.+..+.++.+++.+.+... ++.+..++..++...... ...+....+..+. +++++++..++.+ ....+|..
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ 343 (382)
T PRK11128 271 DLLLLSAICGVVRWGLMGST-----TALPWLIVIQILHCGTFT-VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIA 343 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHH
Confidence 99888887777766554431 233333333333333233 2344444666676 5566788888886 44567778
Q ss_pred HHHHHhHHhHHhhCchhHHHHHHHHHHHHH
Q 008804 500 IVTFAFSPLKELLGAENIFLLFAAIAFLAV 529 (553)
Q Consensus 500 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 529 (553)
++|.+.|.+.|..|. ..++..+++.+++.
T Consensus 344 ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 344 IMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 999999999999986 45665555554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=239.80 Aligned_cols=336 Identities=18% Similarity=0.153 Sum_probs=226.8
Q ss_pred chhhhccccccc-cCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 008804 109 YDIGATSGATIS-LQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA 187 (553)
Q Consensus 109 ~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~ 187 (553)
.......+.+|. +.++ +|+++.+.+++.+++.++++++++++|+++||+|||++++++.++.+++.++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~ 87 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDD-------LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA 87 (366)
T ss_pred HHHHHhHHhhhHHHHHH-------hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 334445555663 5444 99999999999999999999999999999999999999999999999999999999
Q ss_pred c-hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCC---------CCchH
Q 008804 188 P-GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---------VGGWR 257 (553)
Q Consensus 188 ~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~---------~~~wr 257 (553)
+ +++.+++.|+++|++.+ ..+....++.|++|+++|++++++.....++|..+++.+++.+... ..+||
T Consensus 88 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~ 166 (366)
T TIGR00886 88 VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG 166 (366)
T ss_pred hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 9 99999999999999966 4566788999999999999999999987778877777776654431 22799
Q ss_pred HHH-hhhHHHHHHHHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccc
Q 008804 258 YMY-GLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYT 335 (553)
Q Consensus 258 ~~f-~~~~~~~~~~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (553)
+.| +..+++.++..+ ...+.+|+|+. +++++ +. +....... .
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~-----~~~~~~~~-----------------~ 210 (366)
T TIGR00886 167 WAFVIVPAGILLLPALLIFFVGADTPPG-------------KPATG-KL-----SFKGARWS-----------------V 210 (366)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccCCcc-------------cccch-hc-----cccccccc-----------------c
Confidence 999 444555444433 34555665530 00000 00 00000000 0
Q ss_pred cccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 008804 336 DEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKV 414 (553)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 414 (553)
++......++.++++.++...+...+..... .....+.|.++++ .+.+. .+++.+.....+..++++++.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~ 285 (366)
T TIGR00886 211 GTGALGDQLKVFRDRHTWILALLYSVTFGSF----LGVSSIFAMFFKDQFGLSK-VTAGAYASLGGLLGSLARPLGGAIS 285 (366)
T ss_pred cchhHHHHHHHHhccchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHhhccchHH
Confidence 0000012344566776665554433333322 2456677777765 46665 7888888888899999999999999
Q ss_pred cccCCchhhHhHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHH
Q 008804 415 DDLGRRPLLIGGVCGIALSLLLLSAYYKILGG-FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 493 (553)
Q Consensus 415 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 493 (553)
||+|+|+.+..+......+..++..... .. +.........+...+.+. ..+..+....+..| +++|+++|+.+..
T Consensus 286 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~ 361 (366)
T TIGR00886 286 DRLGGARKLLMSFLGVAMGAFLVVLGLV--SPLSLAVFIVLFVALFFFSGA-GNGSTFALVPHIFR-RATGAVSGLVGAI 361 (366)
T ss_pred HhhccchhHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHhcc-ccchhhhcchhhch-hhcccHHHHHHHh
Confidence 9999998877776665555544443211 11 222222222222223332 33445577788877 6899999999888
Q ss_pred HHHH
Q 008804 494 NFGS 497 (553)
Q Consensus 494 ~~~g 497 (553)
+++|
T Consensus 362 ~~~g 365 (366)
T TIGR00886 362 GNLG 365 (366)
T ss_pred ccCC
Confidence 7665
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=247.61 Aligned_cols=389 Identities=18% Similarity=0.180 Sum_probs=277.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH-HHHHHHhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGR-LLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r-~l~G~~~g~~~~~ 210 (553)
++.+..+++|+.++....+.+..|+.+.+.||||.|++.+.|.++.+++.++.+|++++|++++.. ++.|+|.|..+..
T Consensus 76 f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~p 155 (509)
T KOG2504|consen 76 FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLP 155 (509)
T ss_pred hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcc
Confidence 899999999999999999999999999999999999999999999999999999999999988876 8899999999999
Q ss_pred hhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCC-chhHHHHhhc
Q 008804 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP-SPRWLLLRAV 289 (553)
Q Consensus 211 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e-~p~~~~~~~~ 289 (553)
...++..||+ |+|+.+.|+...+.++|.++-|.+...+.+.+ |||+.+++.+.+.+-.++....+++ ++.....+.+
T Consensus 156 aiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~-G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~ 233 (509)
T KOG2504|consen 156 AVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKY-GWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEK 233 (509)
T ss_pred hhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhh
Confidence 9999998885 67999999999999999999999999999998 9999999999888776665554433 3220000000
Q ss_pred cCCCchhhhHHHHHHHHHhHh-cCCCCCchhHHHHHHHHHHhhhccccccccccc----eecccccchhHHHHHHHHHHH
Q 008804 290 QGKGSLQEYKEQAISALGKLR-RRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSF----LEVFQGPNLKAFIIGGGLVLF 364 (553)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 364 (553)
+.+. .+...+......++.. ..+...............+.++.......+... .++++++.++.+.+...+..+
T Consensus 234 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~ 312 (509)
T KOG2504|consen 234 DLRN-SAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYL 312 (509)
T ss_pred hhcc-ccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHH
Confidence 0000 0000000000000000 000000000000000001111111100111112 478888777766655555544
Q ss_pred HHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCch--hhHhHHHHHHHHHHHHHHHHH
Q 008804 365 QQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRP--LLIGGVCGIALSLLLLSAYYK 442 (553)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--~~~~~~~~~~~~~~~~~~~~~ 442 (553)
.. .....++|.+.++.+++. .++..+....++..++++++.|++.|+...++ ...++.+..+++.+.+..
T Consensus 313 g~----~~p~~~l~~~~~~~g~~~-~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~--- 384 (509)
T KOG2504|consen 313 GF----NVPFVYLPSYAKSLGLSS-NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF--- 384 (509)
T ss_pred HH----HHHHHHHHHHHhhcCCCh-hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH---
Confidence 43 457788899999988887 89999999999999999999999999988443 344444445554433333
Q ss_pred hhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC-chhHHHHH
Q 008804 443 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLF 521 (553)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~ 521 (553)
...+..+...+++.++....+.......+.|+.+.+.-..+.|+...+..++..+||++.|.+.|..| |...|+..
T Consensus 385 ---~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~ 461 (509)
T KOG2504|consen 385 ---ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFC 461 (509)
T ss_pred ---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhc
Confidence 23445555555565665556666666788999999999999999999999999999999999999998 88888888
Q ss_pred HHHHHHHHHHHHH
Q 008804 522 AAIAFLAVLFIVR 534 (553)
Q Consensus 522 ~~~~~~~~~~~~~ 534 (553)
+++.++++.+.++
T Consensus 462 g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 462 GLCFLLSAVLLLI 474 (509)
T ss_pred ChHHHHHHHHHHH
Confidence 8888887765444
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-30 Score=231.91 Aligned_cols=347 Identities=15% Similarity=0.103 Sum_probs=257.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
.+.+++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++++..+++++++.++++.++++|.+||+|.+....+.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcccccc-chhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhcc
Q 008804 212 PLYIAETCPSQI-RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQ 290 (553)
Q Consensus 212 ~~~i~~~~~~~~-r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~ 290 (553)
.++++|.+|+++ |++++|+.-.+.++|..+||++||.+.+.. |.+.+|++.++++++...+.+++-|..+
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-------- 251 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAPFLVLAIVLLLDGALQLLVIEPTE-------- 251 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCcHHHHHHHHHHHHHHHHheeCccc--------
Confidence 999999998765 799999999999999999999999998887 9999999999999998887766544221
Q ss_pred CCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhCh
Q 008804 291 GKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQ 370 (553)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (553)
.+.+...+..++++++++|..+............ .
T Consensus 252 -----------------------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~----l 286 (464)
T KOG3764|consen 252 -----------------------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSS----L 286 (464)
T ss_pred -----------------------------------------cCccccccCccHHHHHhCchHhhhhcchhhccch----H
Confidence 0001233445678888888665443222221111 1
Q ss_pred hhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHH--HHHHHHHHHHHHHHHhhcCch
Q 008804 371 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV--CGIALSLLLLSAYYKILGGFP 448 (553)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 448 (553)
...---++.+..+.-..+..+.|..+....+...++..+.|.+.||++..+++.... +..+.+.....+.... ...
T Consensus 287 afLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~--~~L 364 (464)
T KOG3764|consen 287 AFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI--AQL 364 (464)
T ss_pred HHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH--HHH
Confidence 112222333333333344358899999999999999999999999999555444333 3333333333221110 011
Q ss_pred HHHHHHHHHHHHHHhcCcccchhhhhcccCCcc---chhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHH
Q 008804 449 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIA 525 (553)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 525 (553)
+.......+..+.......|.. .+..+....+ ..|..+++......+|.++||.+.|.+.+..|+.|...+.++..
T Consensus 365 ~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n 443 (464)
T KOG3764|consen 365 WVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILN 443 (464)
T ss_pred hhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHH
Confidence 2222223333333333444444 3444443334 67899999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHh
Q 008804 526 FLAVLFIVRT 535 (553)
Q Consensus 526 ~~~~~~~~~~ 535 (553)
++-+.+..++
T Consensus 444 ~iyapvl~ll 453 (464)
T KOG3764|consen 444 LIYAPVLLLL 453 (464)
T ss_pred HHHHHHHHHH
Confidence 8777655543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=234.42 Aligned_cols=347 Identities=15% Similarity=0.084 Sum_probs=235.6
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---Hhc-----chHHHHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYA-----PGLGVLLVGRLLYGLG 203 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~---~~~-----~~~~~l~~~r~l~G~~ 203 (553)
+|.+..+.|++.+++.+++.++++++|+++||+|||+.++.+....+++.... .+. +.++.+++.|++.|++
T Consensus 33 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 112 (396)
T TIGR00882 33 NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFV 112 (396)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998777766544332 222 2234556778899998
Q ss_pred hhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcc-cCCchh
Q 008804 204 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-LPPSPR 282 (553)
Q Consensus 204 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~-~~e~p~ 282 (553)
.+...+....++.+.. +++++..+......++|.++||.+++.+.+ . +||.+|++.+++.++..++.+. .+|+|+
T Consensus 113 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (396)
T TIGR00882 113 FSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-I-DPQIVFWLGSGFALILMLLLMFAKPKAPS 188 (396)
T ss_pred hccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-c-CchHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 8888888887777753 334567788888889999999999998755 4 8999999998888877665544 333322
Q ss_pred HHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHH
Q 008804 283 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 362 (553)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (553)
. ++.++. .+ ..+++.+..+.++++|++.++...+.....
T Consensus 189 ~-------------~~~~~~-------~~---------------------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 227 (396)
T TIGR00882 189 S-------------ATVANA-------LG---------------------ANASAFSLKLALELFRQRKFWMFVLYVVGV 227 (396)
T ss_pred h-------------hhhhcc-------cc---------------------cccCCCCHHHHHHHHcCCcHHHHHHHHHHH
Confidence 0 000000 00 000111122355678888776554433322
Q ss_pred HHHHhhChhhHHHhHHHHHHHc----CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHH
Q 008804 363 LFQQITGQPSVLYYAGPILQSA----GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 438 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 438 (553)
.... .....+.+.++++. +.+. ...+.......+...++.+..+++.||+++|+.+.++.++.++...+..
T Consensus 228 ~~~~----~~~~~~~~~y~~~~~~~~~~~~-~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~ 302 (396)
T TIGR00882 228 ACVY----DVFDQQFANFFTSFFATPQQGT-RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS 302 (396)
T ss_pred HHHH----HHHHHHHHHHHHHhccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 2221 12333445555443 2232 4567778888888888999999999999999999888777777655433
Q ss_pred HHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHH-HHHHHHHHHHHHHHHhHHhHHhhCchhH
Q 008804 439 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL-AVLTNFGSNAIVTFAFSPLKELLGAENI 517 (553)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 517 (553)
. ..+.+..... .+..+............+..+..|++.++++.+. .+....+|+++++.+.|++.|..|+...
T Consensus 303 ~-----~~~~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~ 376 (396)
T TIGR00882 303 F-----ATTALEVVIL-KMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGA 376 (396)
T ss_pred h-----cCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 2 1233333322 2333332222222333456677788888887766 5778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008804 518 FLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 518 ~~~~~~~~~~~~~~~~~ 534 (553)
|.+.+++.++..++..+
T Consensus 377 f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 377 YLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988888777765543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=263.36 Aligned_cols=346 Identities=15% Similarity=0.030 Sum_probs=243.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhh
Q 008804 136 AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII---AAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 212 (553)
Q Consensus 136 ~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 212 (553)
....++..+++.+.++++++++|+++||+|||+++.. +.++.++..+.+...+++++++++|+++|++.+...|+..
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 3567899999999999999999999999999998633 3333333333344458999999999999999999999999
Q ss_pred hHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCC
Q 008804 213 LYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGK 292 (553)
Q Consensus 213 ~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~ 292 (553)
+++.+++++++|++++++.+++.++|.++||++++++.... +|++.|++.++..++.+++.+++|+++.- +
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 201 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG-NFVILVALLMGIAVLGWLASLFIPKTGNA--------A 201 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHhhCCCCCCC--------C
Confidence 99999999999999999999999999999999999998877 99999966666666666666667665420 0
Q ss_pred CchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhh
Q 008804 293 GSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPS 372 (553)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (553)
...+. +. .... .....++.+.+++.++...+..++.++... .
T Consensus 202 ~~~~~------------------~~---~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 243 (1140)
T PRK06814 202 PDLKI------------------DR---NIIR-------------STITLLKYAKADKRIWLAILGISWFWLVGA----V 243 (1140)
T ss_pred CCCee------------------cc---chHH-------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHH----H
Confidence 00000 00 0000 001124556677777776665555444332 3
Q ss_pred HHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHH----------
Q 008804 373 VLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY---------- 441 (553)
Q Consensus 373 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---------- 441 (553)
+..+.|.++++ .+.+. ...+++.+...++.+++.++.+++.++..+++.+..+.++.+++.+.+.+..
T Consensus 244 ~~~~~p~~~~~~~g~~~-~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (1140)
T PRK06814 244 VLSQLPLLAKETLGGDE-NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQL 322 (1140)
T ss_pred HHHHhHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccc
Confidence 55677887766 45555 7899999999999999999999999888777766655555554444333210
Q ss_pred -----HhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh-hCch
Q 008804 442 -----KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAE 515 (553)
Q Consensus 442 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~ 515 (553)
.......+... +..++.+++.....+...+++.+..|++.+|+++|+.+++..++..+++.+.|.+.+. .++.
T Consensus 323 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~ 401 (1140)
T PRK06814 323 KSILVFLSKRHGWRIL-IDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIP 401 (1140)
T ss_pred cchhhhhcccccHHHH-HHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 00002223332 3333334444444445668899999999999999999999999999999999998753 3555
Q ss_pred hHHHHHHHHHHHHHH
Q 008804 516 NIFLLFAAIAFLAVL 530 (553)
Q Consensus 516 ~~~~~~~~~~~~~~~ 530 (553)
..+++.+++.++.++
T Consensus 402 ~~~~~~~~~~~~~~~ 416 (1140)
T PRK06814 402 WIILFIALANLIVAI 416 (1140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555544444333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=213.86 Aligned_cols=363 Identities=19% Similarity=0.215 Sum_probs=280.1
Q ss_pred HHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 008804 99 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 178 (553)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~ 178 (553)
.+....++.|+.....+..+|.+.+- ++++..|.+++..+++.+|.+.+++.|++.+|+|+|+.+++|+.+++
T Consensus 17 ~~t~lFfl~G~~~~l~diLip~l~~~-------f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~a 89 (422)
T COG0738 17 LLTSLFFLWGFITCLNDILIPHLKEV-------FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYA 89 (422)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHH-------hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444577888888888888888877 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---hcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCC---
Q 008804 179 LGALTTA---YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA--- 252 (553)
Q Consensus 179 i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~--- 252 (553)
+++.+.. ...++..++++-++.|.|.+...++.+.+++...++++..+.+++.+...++|.+++|++++.++..
T Consensus 90 vg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~ 169 (422)
T COG0738 90 VGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA 169 (422)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence 9999984 6678999999999999999999999999999999998889999999999999999999999998763
Q ss_pred ---------------CCchHHHHhhhHHHHHHHHHHhccc--CCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCC
Q 008804 253 ---------------VGGWRYMYGLSAPLALLMGIGMWSL--PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPG 315 (553)
Q Consensus 253 ---------------~~~wr~~f~~~~~~~~~~~i~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (553)
...||++|...+...++..+..... |+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~--------------------------------- 216 (422)
T COG0738 170 LTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV--------------------------------- 216 (422)
T ss_pred hccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc---------------------------------
Confidence 1158888888888777776655443 33221
Q ss_pred CchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHH
Q 008804 316 DKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATR 394 (553)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 394 (553)
.++++.+.+.....+++++|.++...++.+++...+.. ...|++.++.+ .|.+. .++..
T Consensus 217 ---------------~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva----~gsfl~~y~~~~~g~~~-~~aa~ 276 (422)
T COG0738 217 ---------------AAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVA----IGSFLVSYLEELLGLNE-QQAAY 276 (422)
T ss_pred ---------------ccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHH----HHHHHHHHHHhcCCccH-HHHHH
Confidence 00001111111467889999988888777776666654 77788888888 44454 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhh
Q 008804 395 VSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMV 474 (553)
Q Consensus 395 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (553)
..+....+.++|++++.++..|+...|.+....++..+.++...+. + .. ..+...+..+.+.....|..++..
T Consensus 277 ~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~-----~-g~-v~~~~l~~ig~F~simfPTIfsla 349 (422)
T COG0738 277 YLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI-----G-GV-VALYALFLIGLFNSIMFPTIFSLA 349 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-----c-Ch-HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999888876655444444433331 2 22 223334445555666678888888
Q ss_pred cccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 475 SEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 475 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
.+..| ++...+ |.......+|+++.|++.|++.|..|....+.....+|.+..+
T Consensus 350 l~~l~-~~ts~~-s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~ 403 (422)
T COG0738 350 LKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVL 403 (422)
T ss_pred HhccC-cccccc-ceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 88888 444433 3444456788899999999999999977776655555555443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=258.26 Aligned_cols=343 Identities=17% Similarity=0.060 Sum_probs=237.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 135 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 135 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
+....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++. ...++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 45668999999999999999999999999999999999887766555544 345789999999999999999999999
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCC--------CCchHHHHhhhHHHH-HHHHHHhcccCCchh
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA--------VGGWRYMYGLSAPLA-LLMGIGMWSLPPSPR 282 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~--------~~~wr~~f~~~~~~~-~~~~i~~~~~~e~p~ 282 (553)
.+++.|++|+++|++++++...+..+|.++|+++++++... ..+|++.+.+.++.. ++.+++.+.+||+|.
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 99999999999999999999999999999999999998765 324555544444333 334444566777664
Q ss_pred HHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHH
Q 008804 283 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 362 (553)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (553)
+...+ .++ ...... ......++.+++++.++..++...+.
T Consensus 205 ~~~~~--------~~~----------------~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (1146)
T PRK08633 205 AAPEV--------FDK----------------KKYLFP----------------KLLWRNLKLLRSDRVLWLAIIGLSYF 244 (1146)
T ss_pred CCccc--------ccc----------------cccccH----------------HHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 21000 000 000000 00011234566677666655544444
Q ss_pred HHHHhhChhhHHHhHHHHHH-HcCCCCch-hhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHH
Q 008804 363 LFQQITGQPSVLYYAGPILQ-SAGFSAAA-DATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 440 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 440 (553)
++... ....+.|.++. ..+.+. . ..+++.....++.+++.++.+++.||+++++.+.++.++.+++.+++...
T Consensus 245 ~~~~~----~~~~~~~~~~~~~~g~s~-~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1146)
T PRK08633 245 WFISQ----LAQANFPAYAKEVLGLDN-TFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA 319 (1146)
T ss_pred HHHHH----HHHHhhHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh
Confidence 43332 24455566664 456666 5 78889999999999999999999999999888887777766666555432
Q ss_pred HHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh-hCchhHHH
Q 008804 441 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAENIFL 519 (553)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~ 519 (553)
.+.+. ..+..++.+++.....+...+++.+..|++.||+++|+.+++..+|.++++.+.+.+... .++...++
T Consensus 320 -----~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~ 393 (1146)
T PRK08633 320 -----PSLAS-VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFY 393 (1146)
T ss_pred -----hhHHH-HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 12222 223333333333333445568888999999999999999999999988887776655431 23334455
Q ss_pred HHHHHHHHH
Q 008804 520 LFAAIAFLA 528 (553)
Q Consensus 520 ~~~~~~~~~ 528 (553)
+.+.+.++.
T Consensus 394 ~~~~~~~~~ 402 (1146)
T PRK08633 394 LIALVTLIG 402 (1146)
T ss_pred HHHHHHHHH
Confidence 444444333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-26 Score=225.64 Aligned_cols=378 Identities=20% Similarity=0.203 Sum_probs=274.5
Q ss_pred ccchhhhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008804 87 AFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR 166 (553)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Gr 166 (553)
+...+..|..-++..++..+......++. .+ +.-|+..++++.++..+...+.++++|.++||++|
T Consensus 9 ~~~Fr~lw~a~~iS~lG~~~~~va~~wlv-------~~-------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~dr 74 (524)
T PF05977_consen 9 NRNFRRLWIAQLISNLGDWMQTVALAWLV-------TQ-------LTGSPLMVALVQAASTLPILLLSLFAGALADRFDR 74 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455566666666666665555544421 12 45589999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHH
Q 008804 167 KRELIIAAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 241 (553)
Q Consensus 167 k~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 241 (553)
|++++.+.++.++..++.++ ..+.|.+++.-++.|++.+...|+..+++.|.+|+++...++++.+...++..++
T Consensus 75 rrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~i 154 (524)
T PF05977_consen 75 RRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARII 154 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhc
Confidence 99999999888766555543 2478899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHH
Q 008804 242 GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSER 321 (553)
Q Consensus 242 g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (553)
||.++|.++... |-.+.|++.++..++.++.....++.+. +++. ..+ +..
T Consensus 155 GPalgG~Lva~~-G~~~~f~inalsfl~~i~~l~~~~~~~~-------~~~~----~~e---~~~--------------- 204 (524)
T PF05977_consen 155 GPALGGILVAFF-GAAAAFLINALSFLISILALLRWKPPPP-------PSSL----PRE---RFF--------------- 204 (524)
T ss_pred cchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccc-------cccc----chh---hhh---------------
Confidence 999999988877 8888999988776665554444332211 0000 000 000
Q ss_pred HHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHH
Q 008804 322 QIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIG 400 (553)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 400 (553)
+.-+..++-+.++|..+..++...+..+.. ..+...+|.+.++ .+.+. ...|++....+
T Consensus 205 ---------------~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~----~a~~aLlPl~a~~~l~~~a-~~yGll~a~~g 264 (524)
T PF05977_consen 205 ---------------SALREGLRYVRSSPPLRSVLLRSFLFNLFA----SAVWALLPLFARDVLGGGA-SGYGLLLAAFG 264 (524)
T ss_pred ---------------hhHHHHHHHHhcchHHHHHHHHHHHHHHhh----hHHHHhhhHHHHHHhCCcH-HHHHHHHHHHH
Confidence 000112333444555554443333332222 1234456777655 45555 78999999999
Q ss_pred HHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCc
Q 008804 401 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL 480 (553)
Q Consensus 401 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 480 (553)
++.++|.++.+++.+|+++++++..+.++.+++.+.+.+. . +.+.....++..|...........+..++..|+
T Consensus 265 vGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-----~-~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~ 338 (524)
T PF05977_consen 265 VGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-----P-SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD 338 (524)
T ss_pred HHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999998888888777776666542 2 233333333444444444444556888999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHH
Q 008804 481 RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 481 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 534 (553)
+.||++++++.+....+..+|..+.|.+.+.+|....+.+.++..+++.++.+.
T Consensus 339 ~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 339 WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888888777666666555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=199.82 Aligned_cols=362 Identities=22% Similarity=0.202 Sum_probs=279.0
Q ss_pred HHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 008804 102 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 181 (553)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~ 181 (553)
+..+-.--..+..++.++.+.++ +|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.+++.
T Consensus 19 lia~NLR~~itsvgPLL~~Ir~~-------~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~ 91 (395)
T COG2807 19 LIAFNLRPAITSVGPLLDEIRQD-------LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGI 91 (395)
T ss_pred HHHhccchhhhhhhhhHHHHHHH-------hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33454555577777888777777 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHh
Q 008804 182 LTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYG 261 (553)
Q Consensus 182 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~ 261 (553)
++-... +.+.++.+-.+.|.|.+...+..+.++.+.|| |+-+..++++.+..++|..+++.+...+..+.++||....
T Consensus 92 ~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 92 LIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred HHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 999887 88899999999999999999999999999998 5689999999999999999999999888877668999999
Q ss_pred hhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccc
Q 008804 262 LSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEG 341 (553)
Q Consensus 262 ~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (553)
+.+.++++.++.++.-. .+. +....+.+..
T Consensus 170 ~WAl~allAl~~WlPq~--~r~------------------------------------------------~~~~~~~~~~ 199 (395)
T COG2807 170 FWALLALLALLIWLPQA--LRE------------------------------------------------QAASIATKLV 199 (395)
T ss_pred HHHHHHHHHHHHHhhhc--ccc------------------------------------------------cccccccccc
Confidence 99999999888776421 110 0001222233
Q ss_pred cceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC-c
Q 008804 342 SFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR-R 420 (553)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~ 420 (553)
+-..++|+|.-|.+.+.+.+..+.. +....|+|.++.+.|.+. .++|.+.....+..++.++....+.+|... |
T Consensus 200 ~~~~vw~~~~aW~vtLfmGlqS~~~----Y~~~~WLP~ili~~G~sa-~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r 274 (395)
T COG2807 200 SVRKVWRSPLAWQVTLFMGLQSLLY----YIVIGWLPAILIDRGLSA-AEAGSLLSLMQLAQLPTALLIPLLARRSKNQR 274 (395)
T ss_pred cccccccCchhHHHHHHHHhhHHHH----HHHHHHHHHHHHHcCCCH-HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4456899998888887666655554 458899999999999998 899999999999999999999999997654 5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhccc-CCccchhhHHHHHHHHHHHHHH
Q 008804 421 PLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI-FPLRTRGRGISLAVLTNFGSNA 499 (553)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~ 499 (553)
+..+....++.++.+.+.+.. ....+.. .+..|....+..|+....+... -.++..+.-.|+.+.++++-++
T Consensus 275 ~~~~~~~~~~l~G~~G~~~~P---~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa 347 (395)
T COG2807 275 PLVVLALLLMLVGLVGLLLAP---GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAA 347 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHhh---hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHh
Confidence 555555555555555554321 1222222 2333333344445554554444 3456678888999999999999
Q ss_pred HHHHHhHHhHHhhC-chhHHHHHHHHHHHHHHHHHH
Q 008804 500 IVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 500 ~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 534 (553)
+||.++|.+.|..| |...+..+..+.++..++-+.
T Consensus 348 ~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 348 FGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988 555565555555555444443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=222.32 Aligned_cols=400 Identities=15% Similarity=0.091 Sum_probs=239.8
Q ss_pred hhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 008804 92 SVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI 171 (553)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~ 171 (553)
+.+..+...++......+.....+..++.+..+ +| +.....|+.+.+.++.+++.++.|+++|.||||++++
T Consensus 41 ~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-------iG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i 112 (599)
T PF06609_consen 41 RFIASFAAFSLAVIAAYFVLVLPASILPYINAD-------IG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFI 112 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-------cC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHH
Confidence 333333333343333333333444455555555 77 4567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccC
Q 008804 172 IAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 251 (553)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~ 251 (553)
.+.++..+|+++++.++|...++++..+.|+|.|.... ....++|..|.|.|+...++..........+++.++..+..
T Consensus 113 ~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 113 IGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred HHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 99999999999999999999999999999999887664 56668999999999988877776666666677888776655
Q ss_pred CCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHH------------HHHhHh-cCC-CCCc
Q 008804 252 AVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAIS------------ALGKLR-RRP-PGDK 317 (553)
Q Consensus 252 ~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-~~~-~~~~ 317 (553)
.. +|||.|++.++...+.+++.+++..+|++-..+.. +...++...+.+- .+--+. ... ..++
T Consensus 192 ~~-~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~--~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W 268 (599)
T PF06609_consen 192 HS-GWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGR--KLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPW 268 (599)
T ss_pred CC-CcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccc--cCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 55 99999999999887766544332222322111110 0001111111000 000011 111 1233
Q ss_pred hhHHHHHHHHHH--------hhhccccccccccceecccccc-hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCC
Q 008804 318 LSERQIEDTLVS--------LKSSYTDEKSEGSFLEVFQGPN-LKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFS 387 (553)
Q Consensus 318 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 387 (553)
.+..-+...... .-+.....+++.-..+++|+++ +...++..++....+ +....+-|..... ++.+
T Consensus 269 ~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~----~s~~~l~p~~~~~vf~~d 344 (599)
T PF06609_consen 269 KSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNF----FSVNILWPQQVVNVFGSD 344 (599)
T ss_pred CCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCC
Confidence 332222111110 0010111112222345777643 222222222222222 2233344443333 3332
Q ss_pred C--chhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhh-HhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhc
Q 008804 388 A--AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL-IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQI 464 (553)
Q Consensus 388 ~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (553)
. ....++...+.+++..++.++.+.+..++++-|.. +++.+++.+++.++.... .++....+...++...+.+.
T Consensus 345 ~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~---~~n~~~~i~~~~l~g~giG~ 421 (599)
T PF06609_consen 345 PISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR---PDNKNAAIAFLVLAGFGIGG 421 (599)
T ss_pred CcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc---CCCcchHHHHHHHHHHhHHH
Confidence 2 12467788888889999999999999988876555 455555554444444322 22222222323333223322
Q ss_pred CcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh
Q 008804 465 SFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 511 (553)
Q Consensus 465 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 511 (553)
... ......+-..|++.-|++.|+...++.+|+.++..++..+..+
T Consensus 422 ~~~-~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n 467 (599)
T PF06609_consen 422 ILV-PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTN 467 (599)
T ss_pred HHH-HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 222 3345666778999999999999999999999999998776643
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-26 Score=226.20 Aligned_cols=390 Identities=12% Similarity=0.079 Sum_probs=243.4
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGV-LLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grk~~~~~~~~~~~i~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~ 209 (553)
+|.+..+.+++.+.+.....+..+++|+++|| +||||+++++.+++++++++++++.+... ++++|+++|+|.|...+
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~ 124 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA 124 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence 89999999999999999999999999999999 99999999999999999999999876554 55899999999999999
Q ss_pred hhhhHhhhccccc--cchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHh
Q 008804 210 GAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 287 (553)
Q Consensus 210 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~ 287 (553)
...+++.|.+|++ +|++++++++.+.++|.++||.+++++.+.. |||+.|++.++..++.++.+++.++..+ .+
T Consensus 125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~~F~i~~i~~~~~~~~~~~~~~~~~---~~ 200 (489)
T PRK10207 125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSVTYNLCGAGLIIALLVYFACRGMVK---DI 200 (489)
T ss_pred CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHHHHHcchhhc---cc
Confidence 9999999999877 4578999999999999999999999998888 9999999976544433333333332211 00
Q ss_pred hccCCCchhhhHHHHHH---------HHHhHhcCCCCCchhHHHHHH--HHH---Hhhhccccccccccceecccccchh
Q 008804 288 AVQGKGSLQEYKEQAIS---------ALGKLRRRPPGDKLSERQIED--TLV---SLKSSYTDEKSEGSFLEVFQGPNLK 353 (553)
Q Consensus 288 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (553)
+.+++.+..+....... ......... ......... ... -..++ .+. .+.+|++.+.
T Consensus 201 ~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~f~~~~--~~~-----~~~~r~r~~~ 270 (489)
T PRK10207 201 GSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV---EVANLVLIVLSIVVTIIFFREA--FKL-----DKTGRNKMFV 270 (489)
T ss_pred CCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHH--hcC-----CHHHHHHHHH
Confidence 00010000000000000 000000000 000000000 000 00000 000 1344444333
Q ss_pred HHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCC---CchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchh-------
Q 008804 354 AFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL------- 422 (553)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~------- 422 (553)
...+. +.....+..+.......+.+.++ .... -......+.....+..++..++.+++.||+++|+.
T Consensus 271 ~~~l~--~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k 348 (489)
T PRK10207 271 AFVLM--LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMK 348 (489)
T ss_pred HHHHH--HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 22211 11111111222233334444442 2211 11133455555666677788888999999998873
Q ss_pred hHhHHHHHHHHHHHHHHHH--Hh--hcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHH
Q 008804 423 LIGGVCGIALSLLLLSAYY--KI--LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 498 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 498 (553)
+.+++++.+++++.+.... .. ....+.+.++...++.+.......+...+.+.+..|++.++.++|+.+....+|+
T Consensus 349 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~ 428 (489)
T PRK10207 349 FTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAF 428 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 6667777776665443211 11 1122334455555666667777777878889999999999999999999999999
Q ss_pred HHHHHHhHHhHH----------hhCchhHHHHHHHHHHHHHHHHHHhcc
Q 008804 499 AIVTFAFSPLKE----------LLGAENIFLLFAAIAFLAVLFIVRTVP 537 (553)
Q Consensus 499 ~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 537 (553)
.++..+.+.... ...+.+.|...++..++++++.+...|
T Consensus 429 ~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 429 LLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred HHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887765421 112456677777666666665554433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=232.67 Aligned_cols=329 Identities=15% Similarity=0.104 Sum_probs=229.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hhh-hHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGR-KRELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY 200 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Gr-k~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~ 200 (553)
+|+++.++|++.++..+..++..|+.|+++|| +|| |+.++.+....+++.+++.+.++ ++.+++.+++.
T Consensus 30 ~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (437)
T TIGR00792 30 LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILL 109 (437)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999997 677 45677888888888888877654 45677888899
Q ss_pred HHHhhhhhhhhhhHhhhcc-ccccchhHHhHHHHHHHHHHHHHHHhhhcccC------CCCchHHHHhhhHHHHHHHHHH
Q 008804 201 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQIN------AVGGWRYMYGLSAPLALLMGIG 273 (553)
Q Consensus 201 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~------~~~~wr~~f~~~~~~~~~~~i~ 273 (553)
+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+.. ...+||+.+++.++++++..++
T Consensus 110 ~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 189 (437)
T TIGR00792 110 GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLII 189 (437)
T ss_pred HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 9998888888888889987 56889999999988888887776665544432 1228999999999888877655
Q ss_pred h-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccch
Q 008804 274 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 352 (553)
Q Consensus 274 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
. +.++|.++. .+ +++ .++.+....++.++++|.+
T Consensus 190 ~~~~~~e~~~~-------------~~---------------~~~-----------------~~~~~~~~~~~~l~~~~~~ 224 (437)
T TIGR00792 190 CFFGTKERYSE-------------IP---------------KNI-----------------EKKLSLKQIFKALFKNDQL 224 (437)
T ss_pred HHcCCEecCCC-------------CC---------------ccc-----------------ccCCCHHHHHHHHhCCHHH
Confidence 4 556654310 00 000 0000011234556777777
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 432 (553)
+...+..++..+... ....+.+++.+....+. ...+.+.....++.+++.++.+++.||+|+|+.+..+..+.++
T Consensus 225 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 225 LILCLAYLFYNLAFN----IKNGVQVYYFTYVLGDP-ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHH----HHcchhheeEeeecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 766554444433332 22233344443322223 5566677777899999999999999999999999888777776
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCC-------ccchhhHHHHHHHHHHHHHHHHHHHh
Q 008804 433 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF 505 (553)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~ 505 (553)
+.+.+.+. .++.+. .....+..++......+..+++.+|..+ ++.+|.+.|+.++...+|..+++.+.
T Consensus 300 ~~~~~~~~----~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~ 374 (437)
T TIGR00792 300 GYLIFFFA----GSNLPL-ILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV 374 (437)
T ss_pred HHHHHHHc----chhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555431 122222 2222233333333344556677777754 45689999999999999999999999
Q ss_pred HHhHHhhCch
Q 008804 506 SPLKELLGAE 515 (553)
Q Consensus 506 g~l~~~~g~~ 515 (553)
|.+.+..|+.
T Consensus 375 g~ll~~~G~~ 384 (437)
T TIGR00792 375 GLILGIIGYV 384 (437)
T ss_pred HHHHHHcCCC
Confidence 9999987763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=208.88 Aligned_cols=341 Identities=19% Similarity=0.127 Sum_probs=218.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
.+.+....|.+.+.|++...+.++.+|.++||+|||+++++|++..++..++.+.+.||..++++|++.|+..| .....
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~ 141 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVI 141 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHH
Confidence 34577788999999999999999999999999999999999999999999999999999777778999999988 66778
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccC---CCCchHHH--HhhhHHHHHH-HHHHhcccCCchhHHH
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN---AVGGWRYM--YGLSAPLALL-MGIGMWSLPPSPRWLL 285 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~---~~~~wr~~--f~~~~~~~~~-~~i~~~~~~e~p~~~~ 285 (553)
.++++|.+++++|+++++.+...+++|.++||.+|+++.. ..+.+..+ -++..++... ..+..+++||+-+...
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk 221 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRK 221 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchh
Confidence 9999999999999999999999999999999999999877 22122121 1222222222 3345578899843100
Q ss_pred HhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHH---HHHHHHH
Q 008804 286 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAF---IIGGGLV 362 (553)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 362 (553)
+ ++++ ...+++.+..+. .. +.+...-...+||+..... +-.+.+.
T Consensus 222 ~--~~~~----~~~~~~~~~~~~---------------------~~-----~~~~~~~v~~lrn~p~~~~i~~~~i~~l~ 269 (451)
T KOG2615|consen 222 R--NDEH----STLQEAADDRLA---------------------LL-----KFARIFKVAALRNPPLLDFISVLRIFGLH 269 (451)
T ss_pred h--cccc----cchhhhhhhhhh---------------------hc-----chhhhhhhhhhcCccccchHHHHHHHHHH
Confidence 0 0000 000000000000 00 0000001122333322221 1112222
Q ss_pred HHHHhhChhhHHHhHHHHH-HHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccC--CchhhHhHHHHHHHHHHHHHH
Q 008804 363 LFQQITGQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG--RRPLLIGGVCGIALSLLLLSA 439 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~ 439 (553)
.+.+...+..+.++.+.+. ...|+++ .+.|.+....++..++.........+|.+ .+-.+..+..++.-..+++..
T Consensus 270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss-~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~ 348 (451)
T KOG2615|consen 270 YFLYLELFSGLENTVLFLTHGRFGYSS-MQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL 348 (451)
T ss_pred HHHHHHHHHHHHhhHHHhhcCccCCCh-hhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc
Confidence 3333222223333333332 4467777 78888888888777777776666666665 333444333333333333322
Q ss_pred HHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 008804 440 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 512 (553)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 512 (553)
...+........+..... ....+....++....|+++||+++|+....+.++-++||.+.|.+..+.
T Consensus 349 -----~~~~~~l~~~s~l~sf~~-A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 349 -----ARTPVVLYLGSTLKSFST-ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred -----cccchhhhHHHHHHHHHH-HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 122333333333333333 3334455588899999999999999999999999999999998887653
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-25 Score=219.61 Aligned_cols=395 Identities=11% Similarity=0.022 Sum_probs=251.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
+|++..+.|++.+.+.+++.++.+++|+++|| +|||++++++.++.+++.++.+++++++.++++|++.|+|.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 78999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcccccc---chhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHh
Q 008804 211 APLYIAETCPSQI---RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 287 (553)
Q Consensus 211 ~~~~i~~~~~~~~---r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~ 287 (553)
..++++|++|+++ |++++++++.+.++|.++||++++++.+.. +||+.|++.++..++..+..++.++..+ ..
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~~f~~~~~~~~~~~l~~~~~~~~~~---~~ 198 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHVGFNLAAVGMVIGLLTFFAGRHMLR---DI 198 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHcccccc---cC
Confidence 9999999998754 888999999999999999999999988877 8999999988666555444433332110 00
Q ss_pred hccCCCchhhhHHHHHHH----------HHh-HhcCCCCCchhHHHHHH--HHHHhhhccccccccccceeccccc--ch
Q 008804 288 AVQGKGSLQEYKEQAISA----------LGK-LRRRPPGDKLSERQIED--TLVSLKSSYTDEKSEGSFLEVFQGP--NL 352 (553)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 352 (553)
+.+++...+++.+..... ... ....+ ... ...-... ............++ .....-|++ .+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 274 (475)
T TIGR00924 199 GSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHH-VVI-ANILLMTVTLAVIIFFFRLAFKP--RLDAVARNKMYAY 274 (475)
T ss_pred CCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhc-cHH-HHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHhHHHHH
Confidence 000000000000000000 000 00000 000 0000000 00000000000000 011111111 11
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHc-CCC---CchhhHHHHHHHHHHHHHHHHHHHH----hhcc-cCCchhh
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFS---AAADATRVSVVIGVFKLVMTWIAVA----KVDD-LGRRPLL 423 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~g~----l~d~-~g~~~~~ 423 (553)
..+.+...+.+.. +.......+.+.++. +.. .....+.+.....+..++..++..+ +.+| .+.+...
T Consensus 275 l~l~~~~~~~~~~----~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~ 350 (475)
T TIGR00924 275 IVLFLEAVVFWVL----YAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPL 350 (475)
T ss_pred HHHHHHHHHHHHH----HHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHH
Confidence 1222222222222 223333344444332 211 1123667777777777777766554 3333 2223333
Q ss_pred --HhHHHHHHHHHHHHHHHHHhhc---CchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHH
Q 008804 424 --IGGVCGIALSLLLLSAYYKILG---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN 498 (553)
Q Consensus 424 --~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 498 (553)
.++.++.+++++.+.+...... ..+.+.++...++.+.......|...++..+..|++.||+.+|+......+|.
T Consensus 351 k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~ 430 (475)
T TIGR00924 351 KFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGS 430 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 5677777777666654221111 23455556666677777778888989999999999999999999999999999
Q ss_pred HHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhccc
Q 008804 499 AIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 499 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
.+++.+.....+..++...|...++++++..++.++..|.
T Consensus 431 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 431 LLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877777777778888877777777666555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=221.44 Aligned_cols=326 Identities=14% Similarity=0.002 Sum_probs=223.6
Q ss_pred hccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhHH-HHHHHHHHHHHHHHHHh
Q 008804 113 ATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKRE-LIIAAVLYALGALTTAY 186 (553)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grk~~-~~~~~~~~~i~~~~~~~ 186 (553)
..++.++.+.++ +|+|.+++|++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++..++.++
T Consensus 6 ~~~~~~~~~~~~-------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~ 76 (356)
T TIGR00901 6 LVGNTLPYWLRS-------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF 76 (356)
T ss_pred hHHhHHHHHHHH-------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc
Confidence 334455555555 89999999999766 555555 99999999998 89887 56778888888777777
Q ss_pred c---chHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCc--------
Q 008804 187 A---PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG-------- 255 (553)
Q Consensus 187 ~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~-------- 255 (553)
. .+++.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.... +
T Consensus 77 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-g~~~~~~~~ 155 (356)
T TIGR00901 77 LVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE-FANTGLITL 155 (356)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc
Confidence 6 467778888888999999999999999999999999999999999999999999999999887776 6
Q ss_pred hHHHHhhhHHHHHHHHHHhcc-cCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcc
Q 008804 256 WRYMYGLSAPLALLMGIGMWS-LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSY 334 (553)
Q Consensus 256 wr~~f~~~~~~~~~~~i~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (553)
||..|++.++..++..+..++ .+|+++. + +.+++ +..
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~--------~---~~~~~---------------------~~~---------- 193 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKEPQED--------A---SVPKP---------------------LTQ---------- 193 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCcc--------c---ccchh---------------------HHH----------
Confidence 999999999887776655543 4553210 0 00000 000
Q ss_pred ccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHH-HHHHHHHHHHHHh
Q 008804 335 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIG-VFKLVMTWIAVAK 413 (553)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l 413 (553)
+.+..++++++++..+..........+ ....+.....+.|.++++.|++. .+.+......+ +..+++.++++++
T Consensus 194 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~-~~~g~~~~~~~~~~~~~g~~~~g~l 268 (356)
T TIGR00901 194 ---AVLKPIREFFQRKNMIQALLLLLLIVL-YKLGDSAATVLTTLFLLDMGFSK-EEIALVAKINGLLGAILGGLIGGII 268 (356)
T ss_pred ---HHHHHHHHHHHhcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCH-HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 001123345555542222222212111 12223345667788887777776 67776666555 6778999999999
Q ss_pred hcccCCchhhHhHHHHHHHHHHHHHHHHHhhc-----CchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHH
Q 008804 414 VDDLGRRPLLIGGVCGIALSLLLLSAYYKILG-----GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 488 (553)
Q Consensus 414 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 488 (553)
.||+|+|+.+..+.++.+++..++.+...... ......+....++.++......+...++..|.+|+++||+.+|
T Consensus 269 ~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 348 (356)
T TIGR00901 269 MQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMA 348 (356)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 99999999988887777666554443221100 0122223333333334334455566799999999999999999
Q ss_pred HHHHHHH
Q 008804 489 LAVLTNF 495 (553)
Q Consensus 489 ~~~~~~~ 495 (553)
+.+...+
T Consensus 349 ~~~~~~~ 355 (356)
T TIGR00901 349 LLSSLSA 355 (356)
T ss_pred HHHHHHh
Confidence 9877653
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-25 Score=216.52 Aligned_cols=371 Identities=16% Similarity=0.012 Sum_probs=249.2
Q ss_pred HHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHH--HHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHH
Q 008804 99 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLV--VSGSLYGALLGSILVYS-IADFLGRKRELIIAAV 175 (553)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~i~~~~~G~-l~dr~Grk~~~~~~~~ 175 (553)
.+...++..|...+...+.+|...++ .|.+.+++|++ .+.+.+...+.+++++. ..||+||||.+++.+.
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~-------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~ 77 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLRE-------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQ 77 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHH
Confidence 34445677888888888888888877 89999999997 46778888888888854 7999999988766553
Q ss_pred HH-HHHHHHHH---hcch-HHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhccc
Q 008804 176 LY-ALGALTTA---YAPG-LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI 250 (553)
Q Consensus 176 ~~-~i~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~ 250 (553)
+. ++.....+ ...+ ..+++..-++.++..+...+...++..|..++++++.+.+....+..+|.++|+.+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~ 157 (390)
T TIGR02718 78 CLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF 157 (390)
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22222222 2222 3344555566777778888888888899998888898888898888999999999888888
Q ss_pred CCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHh
Q 008804 251 NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSL 330 (553)
Q Consensus 251 ~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (553)
+.. |||..|++.+++.++..+..++++|+++. + +++
T Consensus 158 ~~~-gw~~~f~~~a~l~~~~~~~~~~~~~~~~~--------~---~~~-------------------------------- 193 (390)
T TIGR02718 158 GKF-GQRPAFLLVACVPLASLVCVLWLKDRAVA--------S---PEA-------------------------------- 193 (390)
T ss_pred HHh-CHHHHHHHHHHHHHHHHHHHHHcCCCCcC--------c---ccc--------------------------------
Confidence 877 99999999999888766665555443210 0 000
Q ss_pred hhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHH-HHHHHHHH
Q 008804 331 KSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGV-FKLVMTWI 409 (553)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 409 (553)
++.+..++++++|+|..+......++...... ....+.+.++++.|++. .+.+......++ ..+++.++
T Consensus 194 -----~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l~~~G~s~-~~ig~~~~~~~~~~~~~g~~~ 263 (390)
T TIGR02718 194 -----PLARRASLFRFFRRPLAWSLLALALLSAMTAV----SGFGLSKLYLVDAGWPL-EWIGRLGMAGGAVTVLLGCGG 263 (390)
T ss_pred -----chhhHHHHHHHHcCcCHHHHHHHHHHHHHHHH----HHHHHhhHHHHhcCCCH-HHHHHHHhHHHHHHHHHHHHH
Confidence 00001124567777776666554444433332 24446677778888887 778887776654 66777899
Q ss_pred HHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCc-cchhhHHH
Q 008804 410 AVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL-RTRGRGIS 488 (553)
Q Consensus 410 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g 488 (553)
.|++.||+|+|+.+..+..+.++..+.....................+..+.......+.......+..++ +.+++.++
T Consensus 264 ~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~ 343 (390)
T TIGR02718 264 GAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVT 343 (390)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHH
Confidence 99999999999998877665533322222111100011111111222221111112222333454455554 88999999
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 489 LAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 489 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
+.+...++|..++|.+.|.+.|..|+...|.+.+++.+++.+
T Consensus 344 ~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 344 AVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888887776666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=232.30 Aligned_cols=374 Identities=18% Similarity=0.191 Sum_probs=256.4
Q ss_pred HHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 008804 102 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 181 (553)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~ 181 (553)
+..+......+.++..++.+.++ |+++..+.|++.+.+.++++++.++.|++.||+|||+++.++.+++++++
T Consensus 40 ~~~~~~~~~~g~~~~~l~~iek~-------F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ 112 (633)
T TIGR00805 40 CAQLQGLLYNGLVNSSLTTIERR-------FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS 112 (633)
T ss_pred HHHHHHHHHHHHHHhhchhhhhh-------hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence 34455555566777777777666 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc---------------------------------------------------hHHHHHHHHHHHHHHhhhhhhh
Q 008804 182 LTTAYAP---------------------------------------------------GLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 182 ~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
+++++.+ .+..++++|+++|+|.+..++.
T Consensus 113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~ 192 (633)
T TIGR00805 113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL 192 (633)
T ss_pred HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence 9998763 2557789999999999999999
Q ss_pred hhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCC---------------------chHHHHhhhHHHHHH
Q 008804 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG---------------------GWRYMYGLSAPLALL 269 (553)
Q Consensus 211 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~---------------------~wr~~f~~~~~~~~~ 269 (553)
..+++.|++|+++|++++++++.+..+|.++|+++++++.+.+. +||..|++.+++.++
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998775321 377788888888888
Q ss_pred HHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccc
Q 008804 270 MGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQG 349 (553)
Q Consensus 270 ~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (553)
..+.++++|++.+-. +.+.+.+.++. +. .....+..+ ..... ..+.....++.++++
T Consensus 273 ~~v~l~~~p~~lp~~-------~~~~~~~~~~~-~~---~~~~~~~~~---~~~~~---------~~~~~~~~~~~Ll~n 329 (633)
T TIGR00805 273 TSIPFFFFPKALPKE-------GKRVNVDVHET-EK---LEKSEDKSR---KKNSD---------ITKDFPKIIKRLLCN 329 (633)
T ss_pred HHHHHHhCccccCCc-------ccccchhhhhh-hc---ccccccccc---hhhhh---------hHHHHHHHHHHHHcC
Confidence 777666666543200 00000000000 00 000000000 00000 000112235678899
Q ss_pred cchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHH-HHHHHHHHHHHhhcccCC--chhhHh
Q 008804 350 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGV-FKLVMTWIAVAKVDDLGR--RPLLIG 425 (553)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~--~~~~~~ 425 (553)
|.++...+..++..... ..+..|+|.++++ .+.+. .+++++.....+ +.+++.+++|+++||++. |+.+..
T Consensus 330 ~~f~~~~l~~~~~~~~~----~~~~~~lP~yl~~~~g~s~-~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~ 404 (633)
T TIGR00805 330 PIYMLVILAQVIDSLAF----NGYITFLPKYLENQYGISS-AEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYF 404 (633)
T ss_pred cHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcH-HHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHH
Confidence 87777665554444433 3577789988875 56665 778887776665 568999999999999984 456665
Q ss_pred HHHHHHHHHHHHHHHH-------------------------Hhh--------c---------------------------
Q 008804 426 GVCGIALSLLLLSAYY-------------------------KIL--------G--------------------------- 445 (553)
Q Consensus 426 ~~~~~~~~~~~~~~~~-------------------------~~~--------~--------------------------- 445 (553)
+.++..++.++..... ... .
T Consensus 405 ~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~ 484 (633)
T TIGR00805 405 AICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVG 484 (633)
T ss_pred HHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccC
Confidence 5555555543322100 000 0
Q ss_pred -----------------------C-------chHH-HHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHH-
Q 008804 446 -----------------------G-------FPLV-AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT- 493 (553)
Q Consensus 446 -----------------------~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~- 493 (553)
. .... .++..++..........|.. ..+-..+|+++|+.+.|+..++
T Consensus 485 ~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~-~i~lR~V~~~~rs~alg~~~~~~ 563 (633)
T TIGR00805 485 TGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLY-MVLLRVVNPEEKSLAIGLQWLCM 563 (633)
T ss_pred CCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchh-eEEeeccCcccchHHhhHHHHHH
Confidence 0 0011 12222222233333444554 5667788999999999999877
Q ss_pred HHHHHHHHHHHhHHhHHh
Q 008804 494 NFGSNAIVTFAFSPLKEL 511 (553)
Q Consensus 494 ~~~g~~~~~~~~g~l~~~ 511 (553)
+-+|.+-+|+++|.++|.
T Consensus 564 rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 564 RVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHhcCCChhHHHhhhhhc
Confidence 566778899999999986
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=208.02 Aligned_cols=361 Identities=15% Similarity=0.147 Sum_probs=232.4
Q ss_pred hhccccccccCCCCCCCcccccCchhH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchH
Q 008804 112 GATSGATISLQSPELSGTTWFNLSAVQ-LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL 190 (553)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~ 190 (553)
...+...+.+..+ +|++..| .|.+.++++.+|+++.++.|+++||+|.|+++.++.+.+++.+++.++++++
T Consensus 43 ~n~s~a~p~L~~e-------lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl 115 (511)
T TIGR00806 43 PGESFITPYLLTV-------LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV 115 (511)
T ss_pred chHHHHHHHHHHH-------cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555544 9999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhh---hHHHH
Q 008804 191 GVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGL---SAPLA 267 (553)
Q Consensus 191 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~---~~~~~ 267 (553)
+.+.+.|++.|++.|... +...++..|+|+++|+++.+++.++..+|.+++++++++ +... |||+.+.+ .....
T Consensus 116 ~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~-gWr~y~~Ln~Isl~s~ 192 (511)
T TIGR00806 116 WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTL-GWISYSTLNIISLVFM 192 (511)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CchhHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999 4455 89876544 34444
Q ss_pred HHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCc-hhHHHHHHHHHHhhhccccccccccceec
Q 008804 268 LLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDK-LSERQIEDTLVSLKSSYTDEKSEGSFLEV 346 (553)
Q Consensus 268 ~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (553)
.+++++.+++|..++-+.-++.+.+ + +. .........+.+. ......+.... ..-..-...+++.
T Consensus 193 ~~a~~~a~~LP~~~~sl~f~~~~~~----~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~ 258 (511)
T TIGR00806 193 TFSVFLALFLKRPKRSLFFNRLEDV----R--GA---LPCELDQMVPGPGGKLEDYLGTCRD-----SFLVRMLSELVTI 258 (511)
T ss_pred HHHHHHHHhCCCCchhhhhcccccc----c--cc---cccccccCCCCCccccchhhhhhhh-----HHHHHHHHHHHHH
Confidence 4455666888865543222211000 0 00 0000000000000 00000000000 0000011123344
Q ss_pred ccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhH
Q 008804 347 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGG 426 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 426 (553)
.+|+...... +.+....++++.+..|...+.++..-+.....|.+-+...+.+.+..+..|++-.++.+-..+.++
T Consensus 259 y~n~~vl~WS----lWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~ 334 (511)
T TIGR00806 259 YRNPQLLLWS----LWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIA 334 (511)
T ss_pred hcCcchhhhh----HHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Confidence 5555443332 333334445556777777777766443223566777777788888999999986655332233333
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 008804 427 VCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 504 (553)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 504 (553)
.+...-+.+++. .. ..++.|...+..+++.+.+.+... +....++.....+.-|..+|+++++..+-..+-..+
T Consensus 335 v~s~~~~gll~~-m~--~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 335 VVSAIQAGLVFW-MS--QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHHHhhh-hh--cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 222222222221 11 135566666777777777765544 444555666676777999999987766655554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=212.49 Aligned_cols=388 Identities=16% Similarity=0.136 Sum_probs=244.4
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA------PGLGVLLVGRLLYGLGIG 205 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~------~~~~~l~~~r~l~G~~~g 205 (553)
+|++..+++++.++. ..+.+++++.|++.||+|+|++++++.+++++++++++++ ++++.+++.|++.|+|.+
T Consensus 57 lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~ 135 (591)
T PTZ00207 57 YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCM 135 (591)
T ss_pred hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 999999999999874 4556788889999999999999999999999999999997 689999999999999999
Q ss_pred hhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHH-HHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-ccc--CCch
Q 008804 206 LAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL-GYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSL--PPSP 281 (553)
Q Consensus 206 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~-g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~--~e~p 281 (553)
...+.....+.+|+| ++||++.|+..++.++|.++ +++..++ ... +|+..|++.+++.++..++. +++ |+.+
T Consensus 136 ~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l-~~~--~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~ 211 (591)
T PTZ00207 136 LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF-FSD--NTSAYFFFLMSFALVVGILAIVFMRLPPFH 211 (591)
T ss_pred HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--hHHHHHHHHHHHHHHHHHHHHhheeCCcch
Confidence 999999999999997 78999999999999999976 4444444 332 78898888888888766644 333 4444
Q ss_pred hHHHHhhccCCCchhhhH----------------------------------------------HHHHH---H--H----
Q 008804 282 RWLLLRAVQGKGSLQEYK----------------------------------------------EQAIS---A--L---- 306 (553)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~---~--~---- 306 (553)
+|...+++.. .+++. ..... . +
T Consensus 212 ~~~~~~~~~~---~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll 288 (591)
T PTZ00207 212 LTGYQEKHLD---EEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTV 288 (591)
T ss_pred hhcccccCCC---HHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4332110000 00000 00000 0 0
Q ss_pred ---------HhHhcCCCC-CchhHH--HHHHHHH-Hhhhc-------c-ccccccccceecccccchhHHHHHHHHHHHH
Q 008804 307 ---------GKLRRRPPG-DKLSER--QIEDTLV-SLKSS-------Y-TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 365 (553)
Q Consensus 307 ---------~~~~~~~~~-~~~~~~--~~~~~~~-~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (553)
+.+...+++ +...+. ..+...+ ...+. + ..++...++++.+++..+|.+++.+++....
T Consensus 289 ~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~ 368 (591)
T PTZ00207 289 IFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGA 368 (591)
T ss_pred HHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCc
Confidence 000000000 000000 0000000 00000 0 0011122677777788888777655444443
Q ss_pred HhhChhhHHHhHHHHHHHc-CCCCchh-hHHHHHHHHHHHHHHHHHHHHhhcccCCch---------hhHhHHHHHHHHH
Q 008804 366 QITGQPSVLYYAGPILQSA-GFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRP---------LLIGGVCGIALSL 434 (553)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~---------~~~~~~~~~~~~~ 434 (553)
.. .+...+.++.+.. |.....+ ...+.++.++++.+|++..|++.....+|+ .+.+..+ +.++.
T Consensus 369 gl----~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~ 443 (591)
T PTZ00207 369 HF----VIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITM 443 (591)
T ss_pred hh----eeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHH
Confidence 33 3556677777887 6523122 233788889999999999998872222211 1222222 33333
Q ss_pred HHHHHHHHhhcCch-HHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHH-HHHhHHhHHhh
Q 008804 435 LLLSAYYKILGGFP-LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV-TFAFSPLKELL 512 (553)
Q Consensus 435 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~-~~~~g~l~~~~ 512 (553)
++++.. .+ ..+.+..++.+.++ +...++....+.|+|. ++-|+-+-+.....-+|+.+. ..++|.++|.-
T Consensus 444 lll~~~------~p~~~L~~~~~lvg~~~-G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~e 515 (591)
T PTZ00207 444 LTLFLT------LPKAALPLPYFIAAFAN-GFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQ 515 (591)
T ss_pred HHHHHH------CCccHhHHHHHHHHHHh-hHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333331 12 22333333333333 3444566688999999 888988888777777777776 56778888652
Q ss_pred ----------C---chhHHHHHHHHHHHHHHHHHHhcccCC
Q 008804 513 ----------G---AENIFLLFAAIAFLAVLFIVRTVPETK 540 (553)
Q Consensus 513 ----------g---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (553)
| +..+|++.+++++++.++...+..++|
T Consensus 516 a~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 516 ADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 2 567899999999988887666554443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-24 Score=212.90 Aligned_cols=391 Identities=13% Similarity=0.092 Sum_probs=230.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~ 209 (553)
+|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.++++|+++|+|.|...+
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~ 131 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA 131 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence 89999999999988887777777899999999 5999999999999999999999874 567778899999999999999
Q ss_pred hhhhHhhhcccccc--chhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHh
Q 008804 210 GAPLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 287 (553)
Q Consensus 210 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~ 287 (553)
...+++.|++|+++ |..++++++.+.++|..+||.+++++.+.. |||+.|++.++..++..+..++.. +++..+
T Consensus 132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~~F~i~~i~~~i~~i~~~~~~---~~~~~~ 207 (500)
T PRK09584 132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSVAFALSVVGMLITVVNFAFCQ---RWVKQY 207 (500)
T ss_pred CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHhH---HHhccC
Confidence 99999999998643 456889999999999999999999998877 999999998865555443332221 111110
Q ss_pred hccCCCchhhhHHHHHH--------HHHhHhcCCCCCchhHHHHHH--HHHHhhhccccccccccceecccccchhHHHH
Q 008804 288 AVQGKGSLQEYKEQAIS--------ALGKLRRRPPGDKLSERQIED--TLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII 357 (553)
Q Consensus 288 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (553)
+.+.+.+..+....... ........+. +. ....... ........... ....+.-+++ ....+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~ 280 (500)
T PRK09584 208 GSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ-EI-ARMALGVVALGIVVIFGKEA----FAMKGAARRK-MIVAFI 280 (500)
T ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcc-hH-HHHHHHHHHHHHHHHHHHHH----hhcCHHHHHH-HHHHHH
Confidence 00000000000000000 0000000010 00 0000000 00000000000 0000011111 111111
Q ss_pred HHHHHHHHHhhChhhHHHhHHHHHHH-cC---CCCchhhHHHHHHHHHHHHHHHHHH----HHhhcccCCchhhHhHHHH
Q 008804 358 GGGLVLFQQITGQPSVLYYAGPILQS-AG---FSAAADATRVSVVIGVFKLVMTWIA----VAKVDDLGRRPLLIGGVCG 429 (553)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~g~~~~~~~~~~~ 429 (553)
.++.....+..+.....++..+..+ .. ..-....+.+.....+..++..++. +++.+|.+..+.+.+++++
T Consensus 281 -~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l 359 (500)
T PRK09584 281 -LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVL 359 (500)
T ss_pred -HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHH
Confidence 1111122222111122222221111 11 1111235666667776666666666 4555555556777888888
Q ss_pred HHHHHHHHHHHHHhhc---CchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 008804 430 IALSLLLLSAYYKILG---GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 506 (553)
Q Consensus 430 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 506 (553)
.+++++.+.......+ ..+.+..+...++.+.......|....++.+..|++.||+++|+......+|+.++..+.+
T Consensus 360 ~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 360 CSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887765432211 1123345556666677777888888899999999999999999887776677666666654
Q ss_pred HhH----------HhhCchhHHHHHHHHHHHHHHHHHH
Q 008804 507 PLK----------ELLGAENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 507 ~l~----------~~~g~~~~~~~~~~~~~~~~~~~~~ 534 (553)
... ...++...|...+++.++.+++.+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 440 LMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1113567777777666655544444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-22 Score=192.11 Aligned_cols=352 Identities=20% Similarity=0.202 Sum_probs=245.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-rk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
.|.|..|+|++.+...+...++++++|.++||++ +|+++.+..++.++........++++.+++..++..+......|.
T Consensus 32 ~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl 111 (400)
T PF03825_consen 32 RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPL 111 (400)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHH
Confidence 7899999999999999999999999999999986 678888888888887778888899999999998899988888999
Q ss_pred hhhHhhhccccccchhHHhHHHHHHHHHHHHHHHh-hhcccCCC--CchHHHHhhhHHHHHHHHHHhcccCCchhHHHHh
Q 008804 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFV-GSFQINAV--GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 287 (553)
Q Consensus 211 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l-~~~l~~~~--~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~ 287 (553)
..++..+... +++.-.|-.-...++|.+++... ++.+.... .+....+++.+...++.....+.+|+.|.- +
T Consensus 112 ~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~---~ 186 (400)
T PF03825_consen 112 SDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK---R 186 (400)
T ss_pred HHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc---c
Confidence 9998888875 33445566666667777666443 22222211 123345666666666655556677776620 0
Q ss_pred hccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHh
Q 008804 288 AVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 367 (553)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (553)
+ .++..++....+..+++|+|++..+++..++......
T Consensus 187 ----------~--------------------------------~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~ 224 (400)
T PF03825_consen 187 ----------S--------------------------------AKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHA 224 (400)
T ss_pred ----------c--------------------------------cCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 0 0000011111223468899988877766655554443
Q ss_pred hChhhHHHhHHHHHHHcC-CCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcC
Q 008804 368 TGQPSVLYYAGPILQSAG-FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG 446 (553)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (553)
....|.+.++++.| .+. ...+....+..++.++.-...+++.+|+|.++++.++.+..++=..++.... +
T Consensus 225 ----~~~~f~~~yl~~~gg~~~-~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~----~ 295 (400)
T PF03825_consen 225 ----AYYTFFSIYLQELGGYSG-STIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS----D 295 (400)
T ss_pred ----HHHHHHHHHHHHcccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 46677788899988 444 6677778888899999999999999999999999999888887777666421 2
Q ss_pred chHHHHHHHH---HHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHH-HHHHHHHHHHHhHHhHHhhCchh------
Q 008804 447 FPLVAVSALL---LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLGAEN------ 516 (553)
Q Consensus 447 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~------ 516 (553)
+.+....... +..+..-..+......++.+..|++.|+++.++++.. ..+|..+|..+.|++.|++|.+.
T Consensus 296 ~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~ 375 (400)
T PF03825_consen 296 PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA 375 (400)
T ss_pred CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence 2222222221 2233322233345558899999999999999998876 67899999999999999988554
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC
Q 008804 517 IFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
.+.+.+++.++..++.+++.||+
T Consensus 376 ~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 376 VFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC
Confidence 34444454555555455544444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=202.77 Aligned_cols=326 Identities=14% Similarity=0.049 Sum_probs=215.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hhh-hHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGR-KRELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY 200 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Gr-k~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~ 200 (553)
+|++..++|++.++..+..++..|+.|.++|| +|| |+.++.+.+..+++.+++...++ ++.+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 777 56666787888777766555443 45666777777
Q ss_pred HHHhhhhhhhhhhHhhhcc-ccccchhHHhHHHHHHHHHHHHHHHhhhcccCC------CCchHHHHhhhHHHHHHHHHH
Q 008804 201 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQINA------VGGWRYMYGLSAPLALLMGIG 273 (553)
Q Consensus 201 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~------~~~wr~~f~~~~~~~~~~~i~ 273 (553)
+.+.........++..|+. ++++|.+..++...+..+|..+++.+...+... ..+|+..+.+.++++++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8777777778889999998 557899888888888888877776544332211 127898888888877766554
Q ss_pred h-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccch
Q 008804 274 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 352 (553)
Q Consensus 274 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
. +..+|.+. ++ + .++.+....++.++||+.+
T Consensus 200 ~~~~~~e~~~-------------~~----------------~-------------------~~~~~~~~~~~~~~~n~~~ 231 (444)
T PRK09669 200 CFFMTKERYT-------------PE----------------V-------------------DNSSSVWKDLKLLLGNSQW 231 (444)
T ss_pred HhCCeEEecC-------------CC----------------C-------------------cCCCCHHHHHHHHhCCchH
Confidence 4 33444211 00 0 0001112235567788887
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 432 (553)
+..++..++....... .....+++.+.. .......+.+.....+..+++.++.+++.||+|+|+.+..+.++..+
T Consensus 232 ~~l~~~~~~~~~~~~~----~~~~~~y~~~~~-~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 232 RIMFIFNVVLLTAVVT----RGGATLYYVNYV-LLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVI 306 (444)
T ss_pred HHHHHHHHHHHHHHHH----Hhhhhheeeeee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 7766544443333321 122222222222 22223444555566677888889999999999999998877665554
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCC-------ccchhhHHHHHHHHHHHHHHHHHHHh
Q 008804 433 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF 505 (553)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~ 505 (553)
+.+.+... ..++ ...+....+..+.......+..+++++|..+ .+..|..+|+.+++..+|..+++.+.
T Consensus 307 ~~~~~~~~---~~~~-~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~ 382 (444)
T PRK09669 307 LSALIFFI---PPSN-VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV 382 (444)
T ss_pred HHHHHHHh---Ccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33322221 1122 2223333334444444555677788888775 33456788999999999999999999
Q ss_pred HHhHHhhCc
Q 008804 506 SPLKELLGA 514 (553)
Q Consensus 506 g~l~~~~g~ 514 (553)
|.+.+..|+
T Consensus 383 g~ll~~~Gy 391 (444)
T PRK09669 383 GWILAWVDY 391 (444)
T ss_pred HHHHHHcCC
Confidence 999998876
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-21 Score=186.43 Aligned_cols=368 Identities=15% Similarity=0.162 Sum_probs=242.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhHHHHHH-HHHHHHHHHHHHhcchHH---------------
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRELIIA-AVLYALGALTTAYAPGLG--------------- 191 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grk~~~~~~-~~~~~i~~~~~~~~~~~~--------------- 191 (553)
+|.+..+.+++..+..+...+.+++.|+++| |+|||+.++++ .+...++.++.+++++++
T Consensus 34 lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~ 113 (477)
T TIGR01301 34 LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRA 113 (477)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHH
Confidence 8999999999999999999999999999999 59999998874 666667777777776643
Q ss_pred --HHHHHHHHHHHHhhhhhhhhhhHhhhccccccc--hhHHhHHHHHHHHHHHHHHHhhhccc--CCC------------
Q 008804 192 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR--GTLISLKELFIVLGILLGYFVGSFQI--NAV------------ 253 (553)
Q Consensus 192 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~lG~~~g~~l~~~l~--~~~------------ 253 (553)
.++++-.+..++.....+...+++.|.+|+++| +.+.++.+.+.++|.++|+.++++.. ...
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~ 193 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC 193 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc
Confidence 233333445557788888899999999998865 57999999999999999999998641 100
Q ss_pred CchHHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhh
Q 008804 254 GGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKS 332 (553)
Q Consensus 254 ~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (553)
.+.|..|++.+++.++..+.. +.++|.|.... ++..++ ..+.. ++
T Consensus 194 ~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~----------~~~~~~------~~~~~--~~---------------- 239 (477)
T TIGR01301 194 ANLKSCFLIDIILLAILTYIALSAVKENPLIGS----------DDFINS------EAAPP--SK---------------- 239 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc----------ccchhh------hcccc--cc----------------
Confidence 156889999888888766655 66788653100 000000 00000 00
Q ss_pred ccccccccccceeccc----c-cchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-c-CCCCc-----hh----hHHHH
Q 008804 333 SYTDEKSEGSFLEVFQ----G-PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-A-GFSAA-----AD----ATRVS 396 (553)
Q Consensus 333 ~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~----~~~~~ 396 (553)
......++++++ - +..+.+.+..++.++..+ .+..|.+.+..+ . +.++. ++ ..+..
T Consensus 240 ----~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f----~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l 311 (477)
T TIGR01301 240 ----HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWF----PFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGL 311 (477)
T ss_pred ----cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH----HHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHH
Confidence 000011122222 1 234455554445555443 355555555543 1 21110 11 22334
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC-chhhHhHHHHHHHHHHHHHHHHHhhcCc-h--------------HHHHHHHHHHHH
Q 008804 397 VVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYYKILGGF-P--------------LVAVSALLLYVG 460 (553)
Q Consensus 397 ~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~ 460 (553)
....+...+.+++..++.+|+|+ |+...++.++.++++....+.....++. . ....+..+...|
T Consensus 312 ~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 391 (477)
T TIGR01301 312 MLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILG 391 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhh
Confidence 45555556777788889999985 6666888777777777776543211100 0 133333444444
Q ss_pred HHhcCcccchhhhhcccCCc--cchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC--chhHHHHHHHHHHHHHHHHHHhc
Q 008804 461 CYQISFGPISWLMVSEIFPL--RTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFLAVLFIVRTV 536 (553)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 536 (553)
..-.....+.++++++..+. +..|..+|+.|.+..+...+.....|.+.+..| ....+.+.++.+++++++.++.+
T Consensus 392 i~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~ 471 (477)
T TIGR01301 392 IPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILL 471 (477)
T ss_pred HHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhC
Confidence 44445566788999998884 456999999999999999999999999777776 45667777788888888888888
Q ss_pred ccCCC
Q 008804 537 PETKG 541 (553)
Q Consensus 537 ~~~~~ 541 (553)
|+++.
T Consensus 472 ~~~~~ 476 (477)
T TIGR01301 472 PRPRV 476 (477)
T ss_pred CCCCC
Confidence 87754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=195.51 Aligned_cols=377 Identities=14% Similarity=0.012 Sum_probs=243.0
Q ss_pred HHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHHHHH
Q 008804 104 GLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKRELIIAAVLYA 178 (553)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-----rk~~~~~~~~~~~ 178 (553)
++..|.. ......++....+ + +|++.++++...+...+...+-.+ +|+++||++ ||+.++++.++.+
T Consensus 35 y~~qGl~-~l~~~~~~~~l~~----~--lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~ 106 (468)
T TIGR00788 35 LFVKGIA-GLMRLPLSPMLTD----D--LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGS 106 (468)
T ss_pred HHHhhHH-HHhhhhhhHHHHH----h--cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHH
Confidence 4555655 4444444444332 2 899999999999999999999666 999999998 7888888877763
Q ss_pred -HHHHHHHhcchHHHH-HHHHHHHHHHhhhhhhhhhhHhhhccccccchhH---HhHHHHHHHHHHHHHHHhhhcccCCC
Q 008804 179 -LGALTTAYAPGLGVL-LVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL---ISLKELFIVLGILLGYFVGSFQINAV 253 (553)
Q Consensus 179 -i~~~~~~~~~~~~~l-~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~lG~~~g~~l~~~l~~~~ 253 (553)
++....+..++.... .+.+++.+++.+...++..+++.|..+ +++... .++......+|.++|+.+++.+.+..
T Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~ 185 (468)
T TIGR00788 107 AILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT 185 (468)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444554444 448899999999999999999999998 555443 33444445689999999999988877
Q ss_pred CchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhc
Q 008804 254 GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSS 333 (553)
Q Consensus 254 ~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (553)
+||..|++.+++.++..+..++++|++.... ++. +++ + ... .........+..
T Consensus 186 -~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~-----~~~--~~~-~-~~~----------~~~~~~~~~~~~------- 238 (468)
T TIGR00788 186 -LTRILFLITAALLLLQLFVSNLSKERRAFVR-----PRI--GTY-L-EMN----------MALLTLGVLANV------- 238 (468)
T ss_pred -CcchHHHHHHHHHHHHHHHHHhccccccccc-----ccc--ccc-c-hhh----------hhhhhhhHHHHH-------
Confidence 8999999999888887666677777531000 000 000 0 000 000000000000
Q ss_pred cccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q 008804 334 YTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAK 413 (553)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 413 (553)
.+.....+..+++|..+..++..++.+.. ..+. ....|. ......|+++ ...|......+++.+++..+.+++
T Consensus 239 ---~~~~~~l~~~l~~~~i~~~l~fifl~~~~-~~~~-~~~~f~-~~~~~lG~s~-~~~G~~~~~~~v~~i~g~~~~~~~ 311 (468)
T TIGR00788 239 ---KVQILGLRGAIQLLEIAKPLIFIFLSYAN-LPGA-SGSVFC-ATTQCLPGGP-SFSGMSKVVGNLGSLCGVGGYDRF 311 (468)
T ss_pred ---HHHHHHHHHHHhcHHHHHHHHHHHHHHhh-cCCC-CceeEE-EEcccCCCCc-chhhhHHHHHHHHHHHHHHHHHHH
Confidence 00011233445666666544433331111 1111 111111 1113467777 889999999999999999999999
Q ss_pred hcccCCchhhHhHHHHHHHHHHHHHHHHH-hh----cCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHH
Q 008804 414 VDDLGRRPLLIGGVCGIALSLLLLSAYYK-IL----GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 488 (553)
Q Consensus 414 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 488 (553)
.+|++.|+.+.++.++.+++.+....... .. ....+.......+...+++....+. ..++.+..|++.+|+.++
T Consensus 312 ~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~a 390 (468)
T TIGR00788 312 LKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFA 390 (468)
T ss_pred HhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHH
Confidence 99999999998888877776644321110 00 0112222233333344444455555 488899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHhhC-----chhHHHHHHHH
Q 008804 489 LAVLTNFGSNAIVTFAFSPLKELLG-----AENIFLLFAAI 524 (553)
Q Consensus 489 ~~~~~~~~g~~~~~~~~g~l~~~~g-----~~~~~~~~~~~ 524 (553)
+.+.+.++|..+++.+.|.+.+..| +...+.+..+.
T Consensus 391 l~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~ 431 (468)
T TIGR00788 391 LLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGH 431 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHH
Confidence 9999999999999999999999988 65555544333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-20 Score=181.79 Aligned_cols=390 Identities=13% Similarity=0.069 Sum_probs=224.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~ 209 (553)
+|.++.+.+.+.+.+.....++.+++|+++||+ |||++++++.++.+++.++++... +...++++..+.++|.|...+
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~ 119 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS 119 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence 899999999999999999999999999999999 999999999999999988777543 223344455556677777778
Q ss_pred hhhhHhhhccccc--cchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHh
Q 008804 210 GAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLR 287 (553)
Q Consensus 210 ~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~ 287 (553)
...+++.|.+|++ +|..++++.+.+.++|..++|.+.+++.+.. |||+.|.+.++..++.++..++..+. +...
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~~F~iaaigm~l~li~~~~~~~~---l~~~ 195 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAMGFGLAAVGMIAGLVIFLCGNRH---FTHT 195 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHHHhhhh---hccC
Confidence 7889999999875 6999999999999999999999999998877 99999998776544444433322111 0000
Q ss_pred -hccCCCchhhhHHHHHH------HHH----hHhcCCCCCchhHHHHHH-HHHH---hhhccccccccccceecccccch
Q 008804 288 -AVQGKGSLQEYKEQAIS------ALG----KLRRRPPGDKLSERQIED-TLVS---LKSSYTDEKSEGSFLEVFQGPNL 352 (553)
Q Consensus 288 -~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
..+++.. +++ +.... ... .+....-.+......... .... .-.-...+. + +.=| ++.
T Consensus 196 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~er-~r~ 267 (493)
T PRK15462 196 RGVNKKVL-RAT-NFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAE---N--QKQR-KEL 267 (493)
T ss_pred CCCCCCCc-hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C--HHHH-hhH
Confidence 0000000 000 00000 000 000000000000000000 0000 000000000 0 0001 111
Q ss_pred hH---HHHHHHHHHHHHhhChhhHHHhHHHHHHH--cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC--ch----
Q 008804 353 KA---FIIGGGLVLFQQITGQPSVLYYAGPILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR--RP---- 421 (553)
Q Consensus 353 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~---- 421 (553)
.. +.+...+++..+.-..+.+..|.....+. .|+. ....++.....+..++.+++..++-.|..+ |.
T Consensus 268 ~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~--ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~ 345 (493)
T PRK15462 268 GLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT--VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIW 345 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee--eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcH
Confidence 11 11111122222221122222222211111 1221 346677788888777777777766555422 21
Q ss_pred -hhHhHHHHHHHHHHHHHHHHHhhcC---chHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHH-HH
Q 008804 422 -LLIGGVCGIALSLLLLSAYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN-FG 496 (553)
Q Consensus 422 -~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~ 496 (553)
-..+++++++++++.+.+.....+. .+..+++...++......+..|+..+.++++.|++.+|..+|+..... .+
T Consensus 346 ~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~ 425 (493)
T PRK15462 346 GKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAI 425 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 2556777778877776554332211 244456666667778888999999999999999999999999986533 46
Q ss_pred HHHHHHHHhHHhHHh------------hCchhHHHHHHHHHHHH-HHHHHHh
Q 008804 497 SNAIVTFAFSPLKEL------------LGAENIFLLFAAIAFLA-VLFIVRT 535 (553)
Q Consensus 497 g~~~~~~~~g~l~~~------------~g~~~~~~~~~~~~~~~-~~~~~~~ 535 (553)
|..++..+.+..... ..+...|...+...++. .++.+.+
T Consensus 426 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 477 (493)
T PRK15462 426 ANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGVVLMIW 477 (493)
T ss_pred HHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555444210 12345677666666555 4444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-21 Score=190.79 Aligned_cols=334 Identities=13% Similarity=0.027 Sum_probs=215.6
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhhh-hHHHHHHHHHHHHHHHHHHhcc------hHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGR-KRELIIAAVLYALGALTTAYAP------GLGVLLVGRLLY 200 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Gr-k~~~~~~~~~~~i~~~~~~~~~------~~~~l~~~r~l~ 200 (553)
+|++..++|.+..+..+.-++..|+.|.++| |+|| |+.++++.+..+++.+++...+ .++.+++..++.
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999 6698 6777778888888876664433 144566667778
Q ss_pred HHHhhhhhhhhhhHhhhcc-ccccchhHHhHHHHHHHHHHHHHHHhhhccc------CCCCchHHHHhhhHHHHHHHHHH
Q 008804 201 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQI------NAVGGWRYMYGLSAPLALLMGIG 273 (553)
Q Consensus 201 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~------~~~~~wr~~f~~~~~~~~~~~i~ 273 (553)
+++.....+...+++.|.. ++++|.+..++-..+.++|..+.+.+...+. +...+|+....+.+++.++..+.
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999998 6889999998877777777555544433221 11116777777777776665443
Q ss_pred h-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccch
Q 008804 274 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 352 (553)
Q Consensus 274 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
. +..+|.+.. +. + .. ++.++.+-+..++.+++|+.+
T Consensus 197 ~~~~~~e~~~~-------------~~-~-----------~~------------------~~~~~~~~~~~~~~~~~n~~~ 233 (473)
T PRK10429 197 TLRNVHEVYSS-------------DN-Q-----------VS------------------AEGSHLTLKDIVALIYKNDQL 233 (473)
T ss_pred HHcCceecCCc-------------cc-c-----------cc------------------ccccCCCHHHHHHHHhcCHHH
Confidence 3 445553210 00 0 00 000000111123345677666
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 432 (553)
+..+...++...... ....+.+++.+...... ...+.+.....++.+++.++.+++.||+|+|+.+.++..+..+
T Consensus 234 ~~ll~~~~~~~~~~~----~~~~~~~y~~~y~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 234 SCLLGMALAYNIASN----IINGFAIYYFTYVIGDA-DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHH----HHhhheeeEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 655544444433222 23334444444433333 4555666666788899999999999999999999877766555
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCC-------ccchhhHHHHHHHHHHHHHHHHHHHh
Q 008804 433 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF 505 (553)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~ 505 (553)
+.+.+...........+.. ++..+..+.......+..+++.+|..+ .+..|..+|...++..++..+++.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~-~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~ 387 (473)
T PRK10429 309 SCGVLLLMGLAAPHNALLI-VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI 387 (473)
T ss_pred HHHHHHHHhccCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5544432211111222222 223233333333444556678888855 34457789999999999999999999
Q ss_pred HHhHHhhCc
Q 008804 506 SPLKELLGA 514 (553)
Q Consensus 506 g~l~~~~g~ 514 (553)
|.+.+..|+
T Consensus 388 g~~l~~~Gy 396 (473)
T PRK10429 388 GVVLGLIGY 396 (473)
T ss_pred HHHHHHcCC
Confidence 999988776
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-20 Score=168.98 Aligned_cols=395 Identities=16% Similarity=0.116 Sum_probs=266.4
Q ss_pred hhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 008804 92 SVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI 171 (553)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~ 171 (553)
++|+++++.++..+..++....+++..-....- ++ +....-|+.-+|++.+....+++-|+.||+|-|..++
T Consensus 42 rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~-------Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l 113 (480)
T KOG2563|consen 42 RRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSF-------YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL 113 (480)
T ss_pred hHhHHHHHHHHHHhcCcchheeehhHHHHHHHH-------hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence 344445555555666655544443332222222 66 7778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc------chHH--HHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHH
Q 008804 172 IAAVLYALGALTTAYA------PGLG--VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGY 243 (553)
Q Consensus 172 ~~~~~~~i~~~~~~~~------~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~ 243 (553)
++..+.++|..+-..+ +.++ ....+..+.+.++-........+..-|+++++|..+..+-..+..+|.++|.
T Consensus 114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ 193 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF 193 (480)
T ss_pred HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence 9999999999987664 3455 6778889999888877777778889999999999999999999999999999
Q ss_pred HhhhcccCCC-----CchHH--HHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCC
Q 008804 244 FVGSFQINAV-----GGWRY--MYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPG 315 (553)
Q Consensus 244 ~l~~~l~~~~-----~~wr~--~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (553)
++...++.+. ..|.. .|+...+++.+.+++. +..++.|+.-. .....+
T Consensus 194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPp-----------s~s~~~------------- 249 (480)
T KOG2563|consen 194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPP-----------SASQAA------------- 249 (480)
T ss_pred hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----------chhHhh-------------
Confidence 9999887654 14654 3554454444444433 33333232000 000000
Q ss_pred CchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHH
Q 008804 316 DKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV 395 (553)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (553)
.++..-..+.+..++++++....++..+...... .+.+.+...+...|++. ..+|..
T Consensus 250 ------------------~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~----~l~~~l~~~l~~sgY~~-~~aG~i 306 (480)
T KOG2563|consen 250 ------------------LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFN----SLSTLLNLALCPSGYEG-VFAGYI 306 (480)
T ss_pred ------------------hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHH----HHHHHhhhccccccCCc-cccchh
Confidence 0011123346678888877766665555444333 23344333344456665 789999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCchh-hHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhh
Q 008804 396 SVVIGVFKLVMTWIAVAKVDDLGRRPL-LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMV 474 (553)
Q Consensus 396 ~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (553)
.....++++++..+.|.+.||.+.-+. .++......++...+.... .. ....+.+...+...+.++.+..|+...+.
T Consensus 307 g~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-~~-~~~~viv~~t~~~~g~~~~~~~Pig~Elg 384 (480)
T KOG2563|consen 307 GALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT-LF-LGDSVIVFTTCGLLGFFGTGYLPIGFELG 384 (480)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-cc-CCceEehhhhHHHHHHhhcCCCCcceeee
Confidence 999999999999999999999876443 4444444333322222211 11 22233344455566677778888988898
Q ss_pred cccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC----chhHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008804 475 SEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG----AENIFLLFAAIAFLAVLFIVRTVPETKGLS 543 (553)
Q Consensus 475 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (553)
.|..-|..-++..|+.++.+++-+++-.++.+...+..+ +...-+.+...+++..++..++.++.++++
T Consensus 385 vE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~ 457 (480)
T KOG2563|consen 385 VETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLR 457 (480)
T ss_pred eeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHh
Confidence 998666778899999999999999999999999988877 544455555566666666666555544433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-19 Score=173.09 Aligned_cols=361 Identities=17% Similarity=0.159 Sum_probs=245.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH-HHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhhhhhhhhh
Q 008804 136 AVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII-AAVLYALGALTTAYA--PGLGVLLVGRLLYGLGIGLAMHGAP 212 (553)
Q Consensus 136 ~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~-~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~ 212 (553)
.+..++..++..+..++..|+.|.++|+-|+||.++. ..++..+++++..+. .+++...+..++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999987666554 445555566666663 3455566666777778888889999
Q ss_pred hHhhhccccccc--------------------------hhHHhHHHHHHHHHHHHHHHhhhcccCCCC-------chHHH
Q 008804 213 LYIAETCPSQIR--------------------------GTLISLKELFIVLGILLGYFVGSFQINAVG-------GWRYM 259 (553)
Q Consensus 213 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~-------~wr~~ 259 (553)
+++.|..+++++ ++..+.-.....+|.++.-++.-.+....+ +-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999998888 899999888888888887776555432221 35888
Q ss_pred HhhhHHHHHHHHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccccc
Q 008804 260 YGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 338 (553)
Q Consensus 260 f~~~~~~~~~~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (553)
+.+.++.-++..+ ..+++||.|+- +. .+..........+++
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~--------~~-~~~~~~~~~~g~~~l----------------------------- 270 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGP--------RP-LPSGSSYLRFGFKRL----------------------------- 270 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCC--------CC-CCcchhHHHHHHHHH-----------------------------
Confidence 8888887766555 45667776530 00 000000011111111
Q ss_pred ccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008804 339 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 417 (553)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 417 (553)
...++++.|.|....++++.++. .-+.+.+......|.. ..+++. .+...+.....+.+++|.++.+++.||+
T Consensus 271 -~~t~k~~~~~~~~~~fLia~~l~----~dg~~ti~~~~~i~a~~~lg~s~-~~l~~~~l~~~i~a~~Ga~~~g~l~~r~ 344 (477)
T PF11700_consen 271 -WRTFKEIRKLRQLFLFLIAYFLY----SDGVNTIISFAGIYATEVLGMST-TQLIVFGLVVQIVAIIGALLFGWLQDRF 344 (477)
T ss_pred -HHHHHHHHhChHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233344445555555443333 3344456666666665 578877 7888888999999999999999999999
Q ss_pred CCc--hhhHhHHHHHHHHHHHHHH--HHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHH
Q 008804 418 GRR--PLLIGGVCGIALSLLLLSA--YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT 493 (553)
Q Consensus 418 g~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 493 (553)
|.| +++..+.++..+..+...+ ..........+.+....+..|.+.+...+..-++.+++.|+++.+..+|++...
T Consensus 345 g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~ 424 (477)
T PF11700_consen 345 GPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAIT 424 (477)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 999 7776665554332222211 000001122233444555566666777788889999999999999999999999
Q ss_pred HHHHHHHHHHHhHHhHHhhC-chhHHHHHHHHHHHHHHHHHHhcccCCC
Q 008804 494 NFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVLFIVRTVPETKG 541 (553)
Q Consensus 494 ~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (553)
+...+.+||.+.|.+.+..| .+..+....++.+++.++. ...+..|+
T Consensus 425 gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g 472 (477)
T PF11700_consen 425 GKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG 472 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence 99999999999999999998 6777777777777776654 44444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=168.67 Aligned_cols=382 Identities=17% Similarity=0.148 Sum_probs=241.5
Q ss_pred hHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHH
Q 008804 93 VILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELI 171 (553)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grk~~~~ 171 (553)
.++.++..|+..|...+.....+........+ .+++.++..++.+.|.....+.+++.|++.|| +|-|..-+
T Consensus 42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d-------~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gti 114 (459)
T KOG4686|consen 42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLD-------SNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTI 114 (459)
T ss_pred HHHHHHHHHHhcccceeecCCchhhhhhhhcc-------cccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHH
Confidence 34445556666666666655555544444444 88899999999999999999999999999995 68888777
Q ss_pred HHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhc
Q 008804 172 IAAVLYALGALTTAY---APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 248 (553)
Q Consensus 172 ~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~ 248 (553)
+-+++..+|.++.+. .+.+|.+.++||+.|+|.-...++-+.+..-|+..|+.+.++|+......+|..+-..+.++
T Consensus 115 i~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ 194 (459)
T KOG4686|consen 115 ILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPF 194 (459)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHH
Confidence 777777788877764 78999999999999999888888899999999999999999999999999999887777777
Q ss_pred ccCCCCch-----HHHHhh----hHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchh
Q 008804 249 QINAVGGW-----RYMYGL----SAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLS 319 (553)
Q Consensus 249 l~~~~~~w-----r~~f~~----~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (553)
+.+..+.. +...-+ ....+...++...-+ .|. .+.+++.+.+-++.
T Consensus 195 ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l----g~~--------------D~rAerilh~e~g~------- 249 (459)
T KOG4686|consen 195 LYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL----GLS--------------DDRAERILHLEEGF------- 249 (459)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh----hhh--------------hhHHHHHHhhhcCc-------
Confidence 65443100 000000 000011111111100 000 11111111111100
Q ss_pred HHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHH
Q 008804 320 ERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVV 398 (553)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 398 (553)
..+..+.+-..-++ |.+|.+.+.+.+++...+ -+....|.+++ +.|+++ ..++.+.+.
T Consensus 250 ---------------~Ge~pkLtdv~~f~-ppfw~~~iicv~yyva~f----PFi~lg~~fF~~rfGlS~-~~a~~i~s~ 308 (459)
T KOG4686|consen 250 ---------------LGEEPKLTDVNTFY-PPFWVLVIICVLYYVAWF----PFITLGPMFFQKRFGLSA-VSAGNILST 308 (459)
T ss_pred ---------------ccCCcccccccccC-ccHHHHHHHHHHHHHHHH----HHhhhhHHHHHHhhCCCh-hhccchhhh
Confidence 00011111111122 456655554444444333 34445566665 467777 677777777
Q ss_pred HHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccC
Q 008804 399 IGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIF 478 (553)
Q Consensus 399 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (553)
......+..++.|.++||.|++-+.+.+..+..+..=.+..+.. .+++.....+.+..... ....|..++.+.
T Consensus 309 vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~---lsPy~~m~~lGLsysll----AcslWP~va~~v 381 (459)
T KOG4686|consen 309 VYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF---LSPYTSMTFLGLSYSLL----ACSLWPCVASLV 381 (459)
T ss_pred hhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh---ccHHHHHHHHhhhHHHH----HHHHhhhhhhhC
Confidence 77888889999999999999998777665544443322222221 23343332222222222 223456667778
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC-c---hhHHHHHHHHHHHHHHHHHH
Q 008804 479 PLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-A---ENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 479 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~---~~~~~~~~~~~~~~~~~~~~ 534 (553)
|.++.|+++|..+.+.++|-.+.|++.|.+.|.-| + ...|+..+.+.+....+.+.
T Consensus 382 pE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 382 PEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred CHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 98999999999999999999999999999998776 3 22344444444554444443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=181.93 Aligned_cols=354 Identities=16% Similarity=0.146 Sum_probs=224.4
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH--HHHHHH-HHhc----chHH-HHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY--ALGALT-TAYA----PGLG-VLLVGRLLYGLG 203 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~--~i~~~~-~~~~----~~~~-~l~~~r~l~G~~ 203 (553)
.|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++..+.+. ..+.+. ..+. .|++ ..+++-...|+.
T Consensus 38 ~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~ 117 (412)
T PF01306_consen 38 AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLV 117 (412)
T ss_dssp H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999666544333222 222222 2222 2322 233333444555
Q ss_pred hhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhccc-CCchh
Q 008804 204 IGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPR 282 (553)
Q Consensus 204 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~-~e~p~ 282 (553)
.....++.-+++.++. ++.+.=.|-.-.+.++|.+++..++|.+.+. +-+..||+....+++..++.++. |+.++
T Consensus 118 f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p~~~fwi~s~~~~il~lll~~~~~~~~~ 193 (412)
T PF01306_consen 118 FNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NPNIIFWIASAAAIILLLLLLLLKPDVPP 193 (412)
T ss_dssp TTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred HcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--CccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence 5555566666655543 3445667777888899999999999998764 56778888777666655554443 33221
Q ss_pred HHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHH
Q 008804 283 WLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 362 (553)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (553)
.... .+ .. ..++++.+.+...+++|+|++|.+++.....
T Consensus 194 ~~~~---------~~-----------------~~---------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~ 232 (412)
T PF01306_consen 194 QAEV---------AD-----------------AL---------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGV 232 (412)
T ss_dssp SS-S---------ST-----------------TS---------------SS------HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhh---------hc-----------------cc---------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHH
Confidence 0000 00 00 0000000111245678888888776654444
Q ss_pred HHHHhhChhhHHHhHHHHHHH----cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHH
Q 008804 363 LFQQITGQPSVLYYAGPILQS----AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 438 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 438 (553)
...+.. +....+.|+.. .+.++ ...|.+.+...+..++.-.+.+++.+|+|.|+.++++..++.+=.+..+
T Consensus 233 ~~~Y~v----fdqqf~~y~~~~f~~~~~g~-~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~ 307 (412)
T PF01306_consen 233 AAIYDV----FDQQFPIYFASFFQSAGQGN-QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG 307 (412)
T ss_dssp HHHHHH----HHHHHHHHHHHTSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHhcccccCh-hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh
Confidence 333332 32223344433 33333 4678888888899999999999999999999999999888888777766
Q ss_pred HHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHH-HHHHHHHHHHHHHHhHHhHHhhCchhH
Q 008804 439 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLGAENI 517 (553)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~ 517 (553)
+. ++++.....-.+-..-..... ....-++.+.+|++..++...+. +...++|.++.+.+.|.+.|+.|++..
T Consensus 308 ~~-----~~~~~i~~~klLH~~e~~l~l-va~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~t 381 (412)
T PF01306_consen 308 FA-----TNPWVISLIKLLHALEFPLLL-VAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHT 381 (412)
T ss_dssp T-------SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-----cchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHH
Confidence 42 334443333333333332333 33447899999999999999885 566899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCC
Q 008804 518 FLLFAAIAFLAVLFIVRTVPETKG 541 (553)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~ 541 (553)
|++.+.+.+...++..+.+++.++
T Consensus 382 ylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 382 YLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHHHheeeecCCCc
Confidence 999999888888888877776554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=183.45 Aligned_cols=329 Identities=19% Similarity=0.211 Sum_probs=242.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhHH-HHHHHHHHHHHHHHHHhc-c-------hHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRE-LIIAAVLYALGALTTAYA-P-------GLGVLLVGRL 198 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grk~~-~~~~~~~~~i~~~~~~~~-~-------~~~~l~~~r~ 198 (553)
+++++..+|++..+..+..++..|+.|.++| |+||||. +++|.+..+++.+++... + .+..+.+..+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 7999999999999999999999999999999 8996654 557888888888888766 4 2344677777
Q ss_pred HHHHHhhhhhhhhhhHhhhccc-cccchhHHhHHHHHHHHHHHHHHHhhhcccCCCC------chHHHHhhhHHHHHHHH
Q 008804 199 LYGLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVG------GWRYMYGLSAPLALLMG 271 (553)
Q Consensus 199 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~------~wr~~f~~~~~~~~~~~ 271 (553)
+..++.........++..|..+ +++|.+..+.-..+..+|.++...+.+.+.+..+ +|++..++.+++.++..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999997 5789999999999888988777777666654332 69999999888888876
Q ss_pred HHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceeccccc
Q 008804 272 IGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 350 (553)
Q Consensus 272 i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (553)
++. +..+|.++. .+++.++.+-+..++.+++||
T Consensus 192 ~i~~~~~ke~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~nr 225 (428)
T PF13347_consen 192 LITFFFVKERSVE----------------------------------------------VTEQEKKISLRDSLRSLFRNR 225 (428)
T ss_pred hhhhheeeecccc----------------------------------------------ccccccccccccchhhhcccc
Confidence 655 445551110 000111222344567888898
Q ss_pred chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHH
Q 008804 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 430 (553)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 430 (553)
.++..++...+..+.... ...+.+++.+..-..+ ...+.+.....++.+++.++.++++||+|+|+.+..+..+.
T Consensus 226 ~~~~l~~~~~~~~~~~~~----~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~ 300 (428)
T PF13347_consen 226 PFRILLLAFFLQWLAFAL----MNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLA 300 (428)
T ss_pred hHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHH
Confidence 888777666555554443 3334445555433333 46677777888999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCc-------cchhhHHHHHHHHHHHHHHHHHH
Q 008804 431 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPL-------RTRGRGISLAVLTNFGSNAIVTF 503 (553)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~g~~~~~~~~g~~~~~~ 503 (553)
+++.+.+.+... .+.+ ......+..+..........+++.+|..+. +..|..+|+.++...++..+++.
T Consensus 301 ~~~~~~~~~~~~---~~~~-~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~ 376 (428)
T PF13347_consen 301 ALGFLLLFFLGP---GSPW-LVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGA 376 (428)
T ss_pred HHHHHHHHHHHh---hhHH-HHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHH
Confidence 888877765431 2333 334444444444455556777888888763 44689999999999999999999
Q ss_pred HhHHhHHhhCch
Q 008804 504 AFSPLKELLGAE 515 (553)
Q Consensus 504 ~~g~l~~~~g~~ 515 (553)
+.+.+.+..|+.
T Consensus 377 i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 377 IVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHhCcC
Confidence 999998887753
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-19 Score=175.80 Aligned_cols=325 Identities=12% Similarity=0.035 Sum_probs=207.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhh-HHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGRK-RELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY 200 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Grk-~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~ 200 (553)
+|+++..+|.+..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++...++ +..+++..++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999995 6875 5556777888888777655442 44566677778
Q ss_pred HHHhhhhhhhhhhHhhhccc-cccchhHHhHHHHHHHHHHHHHHHhhhcccCCC------CchHHHHhhhHHHHHHHHHH
Q 008804 201 GLGIGLAMHGAPLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAV------GGWRYMYGLSAPLALLMGIG 273 (553)
Q Consensus 201 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~------~~wr~~f~~~~~~~~~~~i~ 273 (553)
.++.......-.++..|..+ +++|.+..++...+..+|..+++.+...+.... .+|+....+.+++.++..++
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999986 688999999999999988877766654433221 26888777777776665544
Q ss_pred h-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccch
Q 008804 274 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 352 (553)
Q Consensus 274 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
. ...+|.++ . +. ++.+-+..++.+++|+.+
T Consensus 200 ~~~~~kE~~~--------------~----------------~~-------------------~~~~~~~~l~~~~~Nk~~ 230 (460)
T PRK11462 200 CFFTTKERVE--------------A----------------PP-------------------TTTSMREDLRDIWQNDQW 230 (460)
T ss_pred HHhcceeccC--------------C----------------Cc-------------------cCCCHHHHHHHHhCChHH
Confidence 3 33444221 0 00 000011124456677766
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 432 (553)
+.......+.............+|..+ ..... ...+.+.....++.+++.++++++.||+++|+....+..+..+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y----~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVTW----ILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhh----hcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 655443333333322222222222222 22222 3445566677788899999999999999999887655444333
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCC-------ccchhhHHHHHHHHHHHHHHHHHHHh
Q 008804 433 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFAF 505 (553)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~ 505 (553)
..+++.+. .........+.. +..+.......+..+++..|..+ .+..|..++...+...+|..+++.+.
T Consensus 306 ~~~~~~~~---~~~~~~~~~~~~-~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~ 381 (460)
T PRK11462 306 ISLAMFFV---PMQASITMFVFI-FVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALI 381 (460)
T ss_pred HHHHHHHh---chhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322211 112222222222 22233333444555666777655 33346666777788999999999999
Q ss_pred HHhHHhhCc
Q 008804 506 SPLKELLGA 514 (553)
Q Consensus 506 g~l~~~~g~ 514 (553)
|.+.+..|+
T Consensus 382 g~iL~~~Gy 390 (460)
T PRK11462 382 GWMLAYGGY 390 (460)
T ss_pred HHHHHHcCC
Confidence 999887665
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=178.25 Aligned_cols=326 Identities=13% Similarity=0.033 Sum_probs=200.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhhHHH-HHHHHHHHHHHHHHH-h----cc--hHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL----GRKREL-IIAAVLYALGALTTA-Y----AP--GLGVLLVGRLL 199 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~----Grk~~~-~~~~~~~~i~~~~~~-~----~~--~~~~l~~~r~l 199 (553)
+|++..++|++.+...+..++..++.|+++||. |||+.+ +++.+...+..++.. . ++ ..+.+++..++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 799999999999999999999999999999996 766644 556555555444432 1 11 22334555677
Q ss_pred HHHHhhhhhhhhhhHhhhcccc-ccchhHHhHHHHH-----HHHHHHHHHHhhhcccCCC-CchHHHHhhhHHHHHHHHH
Q 008804 200 YGLGIGLAMHGAPLYIAETCPS-QIRGTLISLKELF-----IVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGI 272 (553)
Q Consensus 200 ~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~lG~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~i 272 (553)
.+++.+...+...++..+...+ ++|.+..++-..+ ..+|..++|.+++...... .+|.....+.++++++..+
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 198 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYF 198 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777744 6788776665443 3355666676665432111 0222222222333333222
Q ss_pred -HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccc
Q 008804 273 -GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPN 351 (553)
Q Consensus 273 -~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (553)
.....+|++. + +.++..-+..++.++||+.
T Consensus 199 ~~~~~~~e~~~-------------~------------------------------------~~~~~~~~~~~~~l~~n~~ 229 (448)
T PRK09848 199 ICFKSTRENVV-------------R------------------------------------IVAQPSLKISLQTLKRNRP 229 (448)
T ss_pred HHHcCcEeccC-------------C------------------------------------CccCCCHHHHHHHHhCCch
Confidence 2233444321 0 0000011123556788888
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHH
Q 008804 352 LKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 431 (553)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 431 (553)
++...+..++...... ....+.++++++....+....++......++.+++.++.+++.||+|+|+.+.++.++..
T Consensus 230 f~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~ 305 (448)
T PRK09848 230 LFMLCIGALCVLISTF----AVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGT 305 (448)
T ss_pred HHHHHHHHHHHHHHHH----HHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 7766655555444333 233445555554322332344444444456778899999999999999999999888777
Q ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCcc-------chhhHHHHHHHHHHHHHHHHHHH
Q 008804 432 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR-------TRGRGISLAVLTNFGSNAIVTFA 504 (553)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~~~~~~ 504 (553)
++.+.+.+. +....+......+..+.+.....+...++..|..|.+ .+|...|+.++...+|..+++.+
T Consensus 306 i~~~~~~~~----~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i 381 (448)
T PRK09848 306 CGYLLFFWV----SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSI 381 (448)
T ss_pred HHHHHHHHc----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 776655431 1222222222233333333444455667777776643 45999999999999999999999
Q ss_pred hHHhHHhhCc
Q 008804 505 FSPLKELLGA 514 (553)
Q Consensus 505 ~g~l~~~~g~ 514 (553)
.+.+.+..|+
T Consensus 382 ~g~~l~~~G~ 391 (448)
T PRK09848 382 PAFILGLSGY 391 (448)
T ss_pred HHHHHHHcCC
Confidence 9999887775
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=168.03 Aligned_cols=277 Identities=17% Similarity=0.125 Sum_probs=191.5
Q ss_pred HhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCC-----------
Q 008804 185 AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV----------- 253 (553)
Q Consensus 185 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~----------- 253 (553)
+...+|+.++++-++.|.|.+...+..+.++.+..+++++.+.+++.+..+++|..++|.+++.+....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999999877321
Q ss_pred ----CchHHHHhhhHHHHHHHHHHhccc--CCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHH
Q 008804 254 ----GGWRYMYGLSAPLALLMGIGMWSL--PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL 327 (553)
Q Consensus 254 ----~~wr~~f~~~~~~~~~~~i~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (553)
.+|+++|++.+.+.++..+.+.+. ||... ++. ++
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-------------~~~-~~-------------------------- 124 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-------------ADV-AR-------------------------- 124 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-------------ccc-cc--------------------------
Confidence 279999997776666655544333 43211 000 00
Q ss_pred HHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHc---CCCCchhhHHHHHHHHHHHH
Q 008804 328 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA---GFSAAADATRVSVVIGVFKL 404 (553)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 404 (553)
.. .+ +....+..+++|.++...+.. +.+......+..|.+.|+.+. +.+. .+++.....+..+.+
T Consensus 125 --~~---~~--~~~~~~~~~~~~~~~l~~~~~----f~yvg~e~~~~~w~~~yl~~~~~~g~s~-~~a~~~~s~~~~~~~ 192 (310)
T TIGR01272 125 --VS---SG--DTTQKTSAFQFTHLVLGALGI----FVYVGAEVSAGSFLVNFLSDPHALGLPE-DQAAHFTAYTWGGAM 192 (310)
T ss_pred --cc---cc--cccchhhHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHH
Confidence 00 00 000112344555444433333 333333345777888888653 5665 788999999999999
Q ss_pred HHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchh
Q 008804 405 VMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRG 484 (553)
Q Consensus 405 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 484 (553)
+|+++.+++.||+++|+.+.++..+..++.+++... . ....... ++..+++.....|...+...+..|+ +.+
T Consensus 193 iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-----~-~~~~~~~-~~l~g~~~s~i~P~~~s~a~~~~~~-~~~ 264 (310)
T TIGR01272 193 VGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-----H-GYVAMWF-VLALGLFNSIMFPTIFSLALNALGR-HTS 264 (310)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----C-CHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhh-hhh
Confidence 999999999999999998887776666655333321 1 1222222 2233444455566666777777774 456
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHH
Q 008804 485 RGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFA 522 (553)
Q Consensus 485 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 522 (553)
++.++. ....+|++++|.+.|.+.|..|.+..+++..
T Consensus 265 ~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 265 QGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred hhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 667775 5678999999999999999999877776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-18 Score=163.74 Aligned_cols=330 Identities=20% Similarity=0.155 Sum_probs=232.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh----hhh-hHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF----LGR-KRELIIAAVLYALGALTTAYAPG------LGVLLVGRLLY 200 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr----~Gr-k~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~ 200 (553)
+|++...+|.+..+.-+--++.-|+.|.++|| +|| |+.++++.+-.++.+.++-.+++ ....++...+.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 89999999999999999999999999999994 676 56677888999999999888773 55667778999
Q ss_pred HHHhhhhhhhhhhHhhhcc-ccccchhHHhHHHHHHHHHHHHHHHhhhccc----CC--CCchHHHHhhhHHHHHHHHHH
Q 008804 201 GLGIGLAMHGAPLYIAETC-PSQIRGTLISLKELFIVLGILLGYFVGSFQI----NA--VGGWRYMYGLSAPLALLMGIG 273 (553)
Q Consensus 201 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~----~~--~~~wr~~f~~~~~~~~~~~i~ 273 (553)
+++.......-.++..|+. +++||.+..++-+.+..+|..+...+...+. +. ..||+..-++.++++.+..+.
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 4678999999999999988766555444333 22 237888888888887776664
Q ss_pred h-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccch
Q 008804 274 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 352 (553)
Q Consensus 274 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
. +-.+|.+. +..+. +...+.+-+..+..+++|+.+
T Consensus 203 ~~~~v~ER~~----------------------------~~~~~----------------~~~~~~~~~~~~~~~~~Nrp~ 238 (467)
T COG2211 203 CFFNVKERVV----------------------------ETQPT----------------KTGVKLKLKDSFLLIFKNRPL 238 (467)
T ss_pred HHHHhhcccC----------------------------ccccC----------------cccccccHHHHHHHHHccchH
Confidence 4 33544331 00000 000011111123356788777
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 431 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 431 (553)
+..++...+.+..... ......+|.+. .+... ............+.+++.++..++.+|+|+|+++.++.++..
T Consensus 239 ~~~l~~~l~~~~~~~i----~~s~~~yy~~y~lg~~~-l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~ 313 (467)
T COG2211 239 LLLLLMNLLLFIAFNI----RGSIMVYYVTYVLGDPE-LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA 313 (467)
T ss_pred HHHHHHHHHHHHHHHH----HhhhhheeEEEEcCChH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence 7666544444333332 33333333332 23333 556666667777777779999999999999999999988888
Q ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCC-------ccchhhHHHHHHHHHHHHHHHHHHH
Q 008804 432 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFP-------LRTRGRGISLAVLTNFGSNAIVTFA 504 (553)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~ 504 (553)
++.+.+.+.. .+....+++..+..+.......++.+++++|..+ .+..|...|...++.-+|.+++..+
T Consensus 314 i~~~~~~f~~----~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~ 389 (467)
T COG2211 314 VGYLLLYFTP----AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389 (467)
T ss_pred HHHHHHHhhc----CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 8888777642 2333444444344444455667788899988865 3446889999999999999999999
Q ss_pred hHHhHHhhCc
Q 008804 505 FSPLKELLGA 514 (553)
Q Consensus 505 ~g~l~~~~g~ 514 (553)
.|++.+..|+
T Consensus 390 ~g~~L~~~Gy 399 (467)
T COG2211 390 PGWILGAIGY 399 (467)
T ss_pred HHHHHHHcCC
Confidence 9999988774
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=162.14 Aligned_cols=402 Identities=15% Similarity=0.102 Sum_probs=257.1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAM 208 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~ 208 (553)
+|.++++..-+.++|..-.-+..+++|+++||+ |+|+.+++|.+++.+|.++.+.+. +...++++-++.++|.|..-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 779999999999999988889999999999997 999999999999999999999984 78899999999999999999
Q ss_pred hhhhhHhhhccccc--cchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHH
Q 008804 209 HGAPLYIAETCPSQ--IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLL 286 (553)
Q Consensus 209 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~ 286 (553)
+....++.|.+|++ +|-..+++++++.++|.+++|++.+++.+.. ||...|-+.++-..+.++.++..+..-.+...
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~ 214 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG 214 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHccchhcCCCC
Confidence 99999999999764 3778899999999999999999999999988 99999999888877777666554321110000
Q ss_pred hhccCCCchhhhHHHHHHHHHhHhc------CCCCCchhHHHHHHHHHH---hhhccccccccccceecccccchhHHHH
Q 008804 287 RAVQGKGSLQEYKEQAISALGKLRR------RPPGDKLSERQIEDTLVS---LKSSYTDEKSEGSFLEVFQGPNLKAFII 357 (553)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (553)
+..+...+.+.............-. .+.+.............. ..+.... ++ ...+--|-...-++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~-~~~er~r~~~~~~Lfl 291 (498)
T COG3104 215 VPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRS--PK-VFDERRRLLAAIPLFL 291 (498)
T ss_pred CCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--Cc-cHHHHHHHHHHHHHHH
Confidence 0000000000000000000000000 000000000000000000 0000000 00 0000000001122333
Q ss_pred HHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCc-------hhhHhHHHHH
Q 008804 358 GGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR-------PLLIGGVCGI 430 (553)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~ 430 (553)
...+++..+--+.+.+..|.....++..+.-.....++.++..+.-++..++..++..+.+++ .-+.++..++
T Consensus 292 ~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 292 FAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 344444444444455555555444333121224677788888888888887777777664333 1234556666
Q ss_pred HHHHHHHHHHHHh----hcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 008804 431 ALSLLLLSAYYKI----LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 506 (553)
Q Consensus 431 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 506 (553)
+.+++++...... .+..+.++++...++..+...+..|+..+++....|+...+..+++.......+..++..+.+
T Consensus 372 g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 372 GLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 6666666554221 123456677777788888899999999999999999999999999988888888888777776
Q ss_pred H------hHHhhCchhHHHHHHHHHHHHHHHHHHhcc
Q 008804 507 P------LKELLGAENIFLLFAAIAFLAVLFIVRTVP 537 (553)
Q Consensus 507 ~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 537 (553)
. ..+.......|..++...++...+.....|
T Consensus 452 ~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 452 LTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 3 334444566777777777766665554443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-17 Score=154.74 Aligned_cols=353 Identities=17% Similarity=0.174 Sum_probs=242.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHhhhhhhh
Q 008804 135 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKREL-IIAAVLYALGALTTAYAPG---LGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 135 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~-~~~~~~~~i~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~ 210 (553)
+.+..|...++..+..++.+|+.|.++|+.|+||.. -....+..+..++..+.++ ++..++...+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 567789999999999999999999999999966554 4555555566666666554 455566678888999999999
Q ss_pred hhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhh--hcccC---------------CCCchHHHHhhhHHHHHHHHHH
Q 008804 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVG--SFQIN---------------AVGGWRYMYGLSAPLALLMGIG 273 (553)
Q Consensus 211 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~--~~l~~---------------~~~~wr~~f~~~~~~~~~~~i~ 273 (553)
-.+++.+..++++-++..++-.....+|..+.-++. ..... ....=|..+.+.++..++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998888887776666666665544442 11111 1115678888888887776664
Q ss_pred h-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccch
Q 008804 274 M-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNL 352 (553)
Q Consensus 274 ~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (553)
. +.+++.++- + ...........++ -+.+++++.++++.
T Consensus 216 m~~~v~~~~~~--------~---~~~~~~l~~g~k~------------------------------L~~t~k~i~~~~~i 254 (438)
T COG2270 216 MILNVHDAEKI--------S---SPPPTALRNGFKE------------------------------LKSTFKEIRGRKNL 254 (438)
T ss_pred HHhcccccccc--------c---ccchHHHHHHHHH------------------------------HHHHHHHHhcccch
Confidence 4 445543320 0 0000000011111 12235556666666
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIA 431 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 431 (553)
..++++.+++.- +.+.+..+...+-. ++|.+. .+...+.....+.+++|+++.|++.||+|.|+++..+.++..
T Consensus 255 ~~FLiA~~~~~D----Gv~til~~~~~fg~~~~gls~-~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~ 329 (438)
T COG2270 255 VLFLIARFFYID----GVNTILAMGGVFGAADLGLSS-TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS 329 (438)
T ss_pred HHHHHHHHHHHh----hHHHHHHHHHHHHHHHcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence 666655444433 44456666666666 678877 889999999999999999999999999999999888877776
Q ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh
Q 008804 432 LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 511 (553)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 511 (553)
+.++...+. . .....+...+..+.+.++.....-++..+.+|+++.+..+|+++..+...+.++|.+.+.+.+.
T Consensus 330 ~~~~~~~~~-----~-~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 330 IAALYLIFL-----E-GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred HHHHHHHHc-----c-ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 665555432 1 2223333444445555566677789999999999999999999999999999999999999998
Q ss_pred hCc-hhHHHHHHHHHHHHHHHHHHhcccCC
Q 008804 512 LGA-ENIFLLFAAIAFLAVLFIVRTVPETK 540 (553)
Q Consensus 512 ~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (553)
+|. +..+....++.+++.+ .+...|..+
T Consensus 404 Tg~~r~g~~~i~vll~iGl~-~L~~v~~~~ 432 (438)
T COG2270 404 TGSSRAGVLSIIVLLLIGLL-LLLRVKVPG 432 (438)
T ss_pred hcchhhHHHHHHHHHHhhHh-hEEeecCCC
Confidence 884 4445555555555544 344444443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=162.28 Aligned_cols=398 Identities=16% Similarity=0.182 Sum_probs=234.2
Q ss_pred cccccchhhhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008804 84 NQEAFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADF 163 (553)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr 163 (553)
+.++.+|+..++..+.. ++.+...+++.+...+..++ -| .+.+.+..|++.++..++.+++++.+|+...|
T Consensus 27 ~~~~t~wrsi~l~~~~s----fl~~v~~sI~~~s~wpYl~~---lD--~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k 97 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNS----FLVAVQFSIYLTSMWPYLQK---LD--PTATATFFGLVIAASSLGHAIFSLIFGIWSNK 97 (488)
T ss_pred cccCCchHhHHHHHHHH----HHHhhhheEEEeecchhhhh---cC--CCCCcchhhHHHHHHHHHHHhcchhhcccccc
Confidence 34455677666655444 44444444444433333322 11 56788889999999999999999999999999
Q ss_pred hhh-hHHHHHHHHHHHHHHHHH-Hh---cc-hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHH
Q 008804 164 LGR-KRELIIAAVLYALGALTT-AY---AP-GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVL 237 (553)
Q Consensus 164 ~Gr-k~~~~~~~~~~~i~~~~~-~~---~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l 237 (553)
.++ |+.++.|.++..+++++. ++ .+ ..+.++++|++.|+|.| ......+|+++....++|.++++....+..+
T Consensus 98 ~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vl 176 (488)
T KOG2325|consen 98 TGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVL 176 (488)
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHH
Confidence 996 888999999999999998 33 23 67899999999999977 6677889999988889999999999998888
Q ss_pred HHHHHHHhhhcccCCC-Cc-----------hHHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHH
Q 008804 238 GILLGYFVGSFQINAV-GG-----------WRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAIS 304 (553)
Q Consensus 238 G~~~g~~l~~~l~~~~-~~-----------wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 304 (553)
|.++||.++..+..-. .| +-.+-|+.+++.++.++.. +++.|.++--.
T Consensus 177 g~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~------------------- 237 (488)
T KOG2325|consen 177 GIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGII------------------- 237 (488)
T ss_pred HHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcc-------------------
Confidence 8888888876654221 02 2345677778877766644 56666554000
Q ss_pred HHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceeccccc--chhHHHHHHHHHHHHHhhChhhHHHhHHHHHH
Q 008804 305 ALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP--NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQ 382 (553)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (553)
++....+ ++ ...-.+-.+.+ .....+++....+...+.....-....+....
T Consensus 238 ---------~~~~~~~---~~--------------~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~ 291 (488)
T KOG2325|consen 238 ---------DKKKRSV---EE--------------EKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMV 291 (488)
T ss_pred ---------ccccccc---hh--------------hccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 0000000 00 00000011111 22222222223233332222223333344445
Q ss_pred HcCCCCchhhHHHHHHHHHHHHHHH---HHHHHhh-cccCCchhhHhHHHHHHHHHHHHHHHHHhhc-C-----------
Q 008804 383 SAGFSAAADATRVSVVIGVFKLVMT---WIAVAKV-DDLGRRPLLIGGVCGIALSLLLLSAYYKILG-G----------- 446 (553)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------- 446 (553)
..+...............+.+++.. +...+.. .++.+|+.+..+.+....+..+......... .
T Consensus 292 ~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~ 371 (488)
T KOG2325|consen 292 MYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGC 371 (488)
T ss_pred HhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCc
Confidence 5555553333333333333333333 3333322 2334455555443333333332221111100 0
Q ss_pred --------------chHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 008804 447 --------------FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 512 (553)
Q Consensus 447 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 512 (553)
+.+..++...+..|...........+.-+|...+..+++..|+....+..+..++|.+...+....
T Consensus 372 ~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~ 451 (488)
T KOG2325|consen 372 DFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS 451 (488)
T ss_pred CcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence 011111111222222222222234477788889999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhc
Q 008804 513 GAENIFLLFAAIAFLAVLFIVRTV 536 (553)
Q Consensus 513 g~~~~~~~~~~~~~~~~~~~~~~~ 536 (553)
|+++.+.+.+...++...+...+.
T Consensus 452 g~~~v~~~~~~~~l~~~~l~~~~~ 475 (488)
T KOG2325|consen 452 GPRPVWIILLCLLLVVAALWIVFL 475 (488)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Confidence 998888877776666655444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=163.12 Aligned_cols=379 Identities=18% Similarity=0.215 Sum_probs=256.0
Q ss_pred HHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 008804 97 FLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVL 176 (553)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~ 176 (553)
+++.++..+..++..+++...+..+.+. |+++..+.|++.+.+-++..+...+..+..-|..|-+.+-+|.++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErR-------F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~ 171 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERR-------FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVL 171 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhh-------cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhH
Confidence 3445555666777777777777777666 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--------------------c---------------------------h----HH-HHHHHHHHHHHHh
Q 008804 177 YALGALTTAYA--------------------P---------------------------G----LG-VLLVGRLLYGLGI 204 (553)
Q Consensus 177 ~~i~~~~~~~~--------------------~---------------------------~----~~-~l~~~r~l~G~~~ 204 (553)
++++++++++- + . ++ .++++.++.|+|.
T Consensus 172 m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~ 251 (735)
T KOG3626|consen 172 MGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGA 251 (735)
T ss_pred HHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCC
Confidence 99999999762 0 0 22 5677889999999
Q ss_pred hhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCC------------------CchHHHHhhhHHH
Q 008804 205 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV------------------GGWRYMYGLSAPL 266 (553)
Q Consensus 205 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~------------------~~wr~~f~~~~~~ 266 (553)
...++...+|+-|...+++-..++|++.....+|.++|.++++++...+ +-|..-|++.+.+
T Consensus 252 Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~ 331 (735)
T KOG3626|consen 252 TPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGAL 331 (735)
T ss_pred CCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976432 1466678888888
Q ss_pred HHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceec
Q 008804 267 ALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEV 346 (553)
Q Consensus 267 ~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (553)
.++..+.++++|.+.+- .+.+...+..+..+..++..+. .....+ +.+.-....+.+
T Consensus 332 ~~~~a~p~f~fPk~lp~-------------~~~~~~~~~~~~~k~~~~~~~~-~~~~~~---------~ikdfp~s~~~l 388 (735)
T KOG3626|consen 332 LLFSAVPLFFFPKELPK-------------SQKRKRARDLHVLKTESGGAKS-DKTFGK---------KIKDFPKSIKRL 388 (735)
T ss_pred HHHHHHHHHhCcccCcc-------------ccccchhhhhcccccccccccC-Ccchhh---------hHHHHHHHHHHH
Confidence 88888888888775430 0000000000000000000000 000000 011123356778
Q ss_pred ccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHH-HHHHHHHHHHHHHHHhhcccCC--chh
Q 008804 347 FQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSV-VIGVFKLVMTWIAVAKVDDLGR--RPL 422 (553)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~g~--~~~ 422 (553)
++||.+...++ ........+..+..|+|.|+++ ++.+. ..+..+.. +...+..+|.+++|++..|+.. |..
T Consensus 389 l~N~if~~~~l----~~~~~~~~~~G~~tFlPKyLE~Qfg~sa-s~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~ 463 (735)
T KOG3626|consen 389 LSNPIFMLVVL----ASVIESLAITGYITFLPKYLETQFGISA-SLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGA 463 (735)
T ss_pred hcCchHHHHHH----HHHHHHHHHhhHHHhhHHHHHHHcCCCH-HHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHH
Confidence 88886655554 4444444555788999999966 56665 66666664 4444667788899999998754 444
Q ss_pred hHhHHHHHHHHHHHHHHHHHh-----------------------h-----------------------------------
Q 008804 423 LIGGVCGIALSLLLLSAYYKI-----------------------L----------------------------------- 444 (553)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~-----------------------~----------------------------------- 444 (553)
..+..++..++.+........ .
T Consensus 464 a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAG 543 (735)
T KOG3626|consen 464 AKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAG 543 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhC
Confidence 444444443333332111000 0
Q ss_pred ------cC--------------------------------c-hHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhh
Q 008804 445 ------GG--------------------------------F-PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGR 485 (553)
Q Consensus 445 ------~~--------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 485 (553)
.. . ....++..++.......+..|.. .++...+|+|+|..
T Consensus 544 C~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~-~i~LR~V~~e~ks~ 622 (735)
T KOG3626|consen 544 CTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGM-LIVLRCVPPEEKSF 622 (735)
T ss_pred CcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcce-EEEEEccCchhchh
Confidence 00 0 02222333333333333444444 66778889999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhHHhHHh
Q 008804 486 GISLAVLT-NFGSNAIVTFAFSPLKEL 511 (553)
Q Consensus 486 ~~g~~~~~-~~~g~~~~~~~~g~l~~~ 511 (553)
++|+..++ +-+|.+-+|+++|+++|.
T Consensus 623 AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 623 ALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred hhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 99998877 667778899999999986
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-14 Score=131.77 Aligned_cols=329 Identities=16% Similarity=0.140 Sum_probs=218.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hhHHH-HHHHHHHHHHHHHHHhc-----c-------hH--H
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG-----RKREL-IIAAVLYALGALTTAYA-----P-------GL--G 191 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G-----rk~~~-~~~~~~~~i~~~~~~~~-----~-------~~--~ 191 (553)
+++...-.+.+.+...+... ..+.+|+.+|+.+ ||..+ ..|..+.+.+..+.+++ . +. +
T Consensus 10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g 88 (403)
T PF03209_consen 10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG 88 (403)
T ss_pred hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence 88999999999999877665 6999999999998 77554 45666666666555442 2 12 2
Q ss_pred --HHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhH--HHH
Q 008804 192 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSA--PLA 267 (553)
Q Consensus 192 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~--~~~ 267 (553)
...+...+.|+|.+.......+++.|..|+++|+++.++.....-+|.+++..+.+.+++.+..-|..-.+.. ++.
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA 168 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 3445667889999999999999999999999999999999999999999999999998887743333333322 222
Q ss_pred HHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecc
Q 008804 268 LLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVF 347 (553)
Q Consensus 268 ~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (553)
++..++..+-.|... .+.. . .++.++..-...++++.
T Consensus 169 ~~l~~ia~wg~E~r~-------------~~~~-----------~-------------------~~~~~~~~f~~a~~~~~ 205 (403)
T PF03209_consen 169 LLLNLIALWGQEPRR-------------SRRA-----------A-------------------AAERPRPPFREAWRQVW 205 (403)
T ss_pred HHHHHHHHHhcccCC-------------cccc-----------c-------------------CCCCCCccHHHHHHHHH
Confidence 222222233223211 0000 0 00001111223355666
Q ss_pred cccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc-ccCCchhhHhH
Q 008804 348 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD-DLGRRPLLIGG 426 (553)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~ 426 (553)
.+|..+++.+..++..+..+.--..+- |+=-+-.|.+. .+...+......+.+++-.+.+++.. |.++++...++
T Consensus 206 ~~~~a~~f~~fl~l~t~a~~~QD~iLE---Pygg~Vfgmsv-~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G 281 (403)
T PF03209_consen 206 ASPQARRFFVFLFLGTLAFFMQDVILE---PYGGEVFGMSV-GETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALG 281 (403)
T ss_pred hCCChhHHHHHHHHHHHHHHhhHHHcC---CchhHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 778777777655554443332111111 22223346665 78888999999999999988998765 67888888788
Q ss_pred HHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhH
Q 008804 427 VCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFS 506 (553)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 506 (553)
.....+++.++...... .+.+......+ ..|+..+.+.....+...+..+++..|..+|.......+...++..+.|
T Consensus 282 ~~~~~~~f~lii~a~~~--~~~~~~~~~~~-l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG 358 (403)
T PF03209_consen 282 CLLGALAFALIILAGPL--GSPWLFRPGVF-LLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG 358 (403)
T ss_pred HHHHHHHHHHHHHHHhc--ccchHHHHHHH-HHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777776654432 23333333333 3333333333334466778888899999999999999999999999999
Q ss_pred HhHHh
Q 008804 507 PLKEL 511 (553)
Q Consensus 507 ~l~~~ 511 (553)
.+.|.
T Consensus 359 ~~~D~ 363 (403)
T PF03209_consen 359 ALRDL 363 (403)
T ss_pred HHHHH
Confidence 88874
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-18 Score=174.34 Aligned_cols=381 Identities=19% Similarity=0.193 Sum_probs=3.0
Q ss_pred HHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 008804 102 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA 181 (553)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~ 181 (553)
+..+..+...+.+...+..+.+. |+++.++.|++.+.+-++..+..++..++.+|..|-+.+-+|.+++++++
T Consensus 10 ~~~~~q~~~~g~~~~~lttiErR-------F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~ 82 (539)
T PF03137_consen 10 LLGLFQMMVSGYVNSSLTTIERR-------FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGS 82 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHH
Confidence 33344455556666666666665 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc--------------------------------------------------hHHHHHHHHHHHHHHhhhhhhhh
Q 008804 182 LTTAYAP--------------------------------------------------GLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 182 ~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
+++++-+ -++.++++.++.|+|....++..
T Consensus 83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG 162 (539)
T PF03137_consen 83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG 162 (539)
T ss_dssp ---------------------------------------------------------------------SSS--------
T ss_pred HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence 9987510 13468889999999999999999
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCC---------------------CchHHHHhhhHHHHHHH
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV---------------------GGWRYMYGLSAPLALLM 270 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~---------------------~~wr~~f~~~~~~~~~~ 270 (553)
.+|+-|.+++++-+.++|++.+...+|.++|.++++.++..+ +.|..-|++.+++.++.
T Consensus 163 ~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 163 ITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876432 13555566677777777
Q ss_pred HHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceeccccc
Q 008804 271 GIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGP 350 (553)
Q Consensus 271 ~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (553)
.+..+++|+.-+-.. +..++.+...++.... + .++..+...........+.-....+++++||
T Consensus 243 aipl~~FPk~lp~~~-----------~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np 305 (539)
T PF03137_consen 243 AIPLFFFPKKLPGTS-----------ERQEEKESSERKEEDS---D---KDSFKDPKSKKSFGKSIKDFPKALKRLLTNP 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCccCCCcc-----------cccchhhhhhcchhhh---h---hhcccccccccchhhhhhhHHHHHHHHhcCh
Confidence 777777766432100 0000000000000000 0 0000000000000011222345567888888
Q ss_pred chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHH-HHHHHHHHHHHHHHhhcccCC--chhhHhH
Q 008804 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVV-IGVFKLVMTWIAVAKVDDLGR--RPLLIGG 426 (553)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~d~~g~--~~~~~~~ 426 (553)
.+....++.. ........+..|.|.|++. .+.+. ..+.++... ...+.++|.+++|++.+|++- |+.+...
T Consensus 306 ~f~~~~la~~----~~~~~~~G~~tF~pKylE~QF~~sa-s~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~ 380 (539)
T PF03137_consen 306 VFMCLILAGV----FESFIVSGFATFLPKYLESQFGLSA-SQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFC 380 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHH
Confidence 6665554333 3333445688899999876 45554 556555543 334778899999999998753 4444444
Q ss_pred HHHHHHHHHHHHHHH--------------Hh-------h--c-----------------------C--chH-HHHHHHHH
Q 008804 427 VCGIALSLLLLSAYY--------------KI-------L--G-----------------------G--FPL-VAVSALLL 457 (553)
Q Consensus 427 ~~~~~~~~~~~~~~~--------------~~-------~--~-----------------------~--~~~-~~~~~~~~ 457 (553)
.++..++.+++.... .. . + + ..+ ..++..++
T Consensus 381 ~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~ 460 (539)
T PF03137_consen 381 IVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFI 460 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHH
Confidence 433333333311110 00 0 0 0 011 12222223
Q ss_pred HHHHHhcCcccchhhhhcccCCccchhhHHHHHHHH-HHHHHHHHHHHhHHhHHhh
Q 008804 458 YVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELL 512 (553)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~ 512 (553)
..........|.. ...-..+|+++|+.+.|+..++ +.+|.+-+|+++|.+.|..
T Consensus 461 ~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 461 LSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 3333334444554 5566788999999999999877 6677788999999999974
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=153.43 Aligned_cols=176 Identities=14% Similarity=0.088 Sum_probs=138.1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHHHhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT---TAYAPGLGVLLVGRLLYGLGIGLAM 208 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~ 208 (553)
+|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...+++++++.|++.+...
T Consensus 281 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 360 (490)
T PRK10642 281 LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFT 360 (490)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888899999999999999999999999998887655443332 2234567788889999998887777
Q ss_pred hhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhh
Q 008804 209 HGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 288 (553)
Q Consensus 209 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~ 288 (553)
.....++.|.+|++.|++++++.+....++..++|.+.+++.+..++|+.++++..+++++.++..+++||+|+|+..+.
T Consensus 361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~ 440 (490)
T PRK10642 361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA 440 (490)
T ss_pred HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 77888899999999999999985555566677888888887765546888887777777777777778899998765421
Q ss_pred ccCCCchhhhHHHHHHHHHhHhc
Q 008804 289 VQGKGSLQEYKEQAISALGKLRR 311 (553)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~ 311 (553)
.+.+++.+|+++.+++++.
T Consensus 441 ----~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 441 ----TPAASDIQEAKEILVEHYD 459 (490)
T ss_pred ----cccccchhhHHHHhhcccc
Confidence 1234778889999988873
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=124.96 Aligned_cols=136 Identities=31% Similarity=0.444 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccc
Q 008804 143 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ 222 (553)
Q Consensus 143 ~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 222 (553)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.++..+.++++.+++.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcc-cCC
Q 008804 223 IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-LPP 279 (553)
Q Consensus 223 ~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~-~~e 279 (553)
+|+++.++......+|..+++.+++.+.+.. +|++.|++.+++.++..+..++ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999988776 8999999988888777665543 444
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=134.95 Aligned_cols=345 Identities=18% Similarity=0.121 Sum_probs=213.1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-----GRKRELIIAAVLYALGALTTAYA----PGLGVLLVGRLLYGL 202 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-----Grk~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~ 202 (553)
+|+++.+...+.+...+...+ .+++|.++|-+ .||+-++++.++.+++.+.++.. .+.....++-++..+
T Consensus 20 l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~ 98 (433)
T PF03092_consen 20 LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF 98 (433)
T ss_pred cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 999999999999998888876 67789999976 36666777887776666666553 356777777888999
Q ss_pred HhhhhhhhhhhHhhhccc--cccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCc
Q 008804 203 GIGLAMHGAPLYIAETCP--SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPS 280 (553)
Q Consensus 203 ~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~ 280 (553)
|......++-+++.|... ++.||...+.......+|.+++..++|.+.+.. ++|..|.+.+++.++..+..+++.|.
T Consensus 99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999983 334778888888999999999999999988887 89999999988888776655544432
Q ss_pred hhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHH-HH
Q 008804 281 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFII-GG 359 (553)
Q Consensus 281 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 359 (553)
.+ +...++.. ....+ +.+. ..... ++.....++.++.+..+...+ ..
T Consensus 178 ~~-------------~~~~~~~~----~~~~~-~~~~-~~~~~-------------~~~~~~l~~~~~~~~i~~~~~~~~ 225 (433)
T PF03092_consen 178 RK-------------VRPADEVF----SFGKE-EVPC-LFGSF-------------REQLSELWRALQQRAIWQPILFFI 225 (433)
T ss_pred cc-------------ccccchhh----ccccc-ccch-hhHHH-------------HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 00000000 00000 0000 00000 001112345555555554443 12
Q ss_pred HHHHHHHhhChhh-HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHH
Q 008804 360 GLVLFQQITGQPS-VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 438 (553)
Q Consensus 360 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 438 (553)
++..+..... .. ..++........+++. ...+.+..+..++.++|..+..++..+..-|+++....++..+..+.-.
T Consensus 226 ~~~~~~~~~~-~a~~fy~~~~~~~gp~fs~-~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~ 303 (433)
T PF03092_consen 226 FFFNLPPSIS-SASSFYFQTDALGGPHFSP-SFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDL 303 (433)
T ss_pred HHHHhccCCC-CccEEEEEeccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccE
Confidence 1111111111 11 1112111111111444 5566666677777777777776666666666666555544433322211
Q ss_pred HHH-----HhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC
Q 008804 439 AYY-----KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 513 (553)
Q Consensus 439 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 513 (553)
... ...-.+.+..+.-..+........+.|.. ...+|+.|+...|+.+++...+.++|..++..+...+.+..|
T Consensus 304 ~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 304 LLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred EEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 100 00001123233333444445555555555 778999999999999999999999999999999998888776
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-13 Score=129.05 Aligned_cols=319 Identities=17% Similarity=0.153 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccc
Q 008804 145 GSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIR 224 (553)
Q Consensus 145 ~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r 224 (553)
...+...+.++..|.++||+|||..+.+..+...+..+...+.. +|.++ .--+.|. .+.......++++|....++|
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~-~~~l~g~-~~~~~s~~~a~vadis~~~~R 146 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL-LLGLSGG-FSAIFSVGFAYVADISSEEER 146 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh-hcccccc-hhhhhhhhhhheeeccchhHH
Confidence 44678889999999999999999999999999988888887765 33333 2222222 345677788999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHH
Q 008804 225 GTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAI 303 (553)
Q Consensus 225 ~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 303 (553)
....++....+..+..++|.+++.+.... |.-.+|++..+..++..+.. +++||+-.- ++.++
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~-------------~~~~~-- 210 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIALVFLIAAASGILSLLYMLLFLPESLQE-------------KERSD-- 210 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhhccccccCc-------------ccccc--
Confidence 99999999999999999999999988876 88889999999988877744 667886530 00000
Q ss_pred HHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChh-hHHHhHHHHH-
Q 008804 304 SALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQP-SVLYYAGPIL- 381 (553)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 381 (553)
...+........... ..+........-.++....+.....+.......+.. .. +.++
T Consensus 211 ---~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~----~~yl~ 269 (463)
T KOG2816|consen 211 ---ATLRELTPGSLDSSH--------------VADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVL----LLYLK 269 (463)
T ss_pred ---ccccccCCCcccchh--------------hhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEE----EEEEe
Confidence 000000000000000 000000001101112222222222222222221111 11 1122
Q ss_pred HHcCCCCchhhHHHHHHHHHHHHHHHHHHH-HhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 008804 382 QSAGFSAAADATRVSVVIGVFKLVMTWIAV-AKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVG 460 (553)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (553)
...+++. .+.+.+.+.......++.++.. .+...++.|+....|...-.+......+. ...|...... .. .
T Consensus 270 ~~f~w~~-~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-----~~~w~~~~~~-v~-~ 341 (463)
T KOG2816|consen 270 AKFGWNK-KEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-----TETWMMFAAG-VV-V 341 (463)
T ss_pred eecCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-----ccchhhhHHH-HH-H
Confidence 2345665 7788777778888888877776 77788898998888888888877777763 2233322222 22 2
Q ss_pred HHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh
Q 008804 461 CYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 511 (553)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 511 (553)
.......|...+..+...+++++|+++++...+..+.+.++|.+.+.+...
T Consensus 342 ~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 342 ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 233445566678888899999999999999999999999999999988654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-13 Score=132.59 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=126.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
+|.++.+.+++.+...++..++.+++|+++||+|||+.+..+.+...+......+.++.+.+++.+++.+++.|...+..
T Consensus 247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~ 326 (393)
T PRK15011 247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIG 326 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999988888888999999999999999998888777666665555667788888899999998888877778
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCC
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 279 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e 279 (553)
..+..|.+|+ +|++++++++....+|..+++.+++.+.+.. +|+..|++.+++.++.++..++.||
T Consensus 327 ~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 327 MLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888999885 5999999999999999999999999998877 8999999988888888777777654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=143.20 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhc
Q 008804 139 LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET 218 (553)
Q Consensus 139 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 218 (553)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.++.+.+++++++.|++.++.++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777899999999999999999999999999999999999999999888889999999998888999999999999
Q ss_pred cccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCch
Q 008804 219 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 281 (553)
Q Consensus 219 ~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p 281 (553)
+|.+.|++++|+.++...+|.++||++++.+... +...+|++.+++.++.+++.+++||+.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999987654 456788888888888777777788865
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=137.23 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=129.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
.+.+..+.|++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+..
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567789999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hhHhhhccccccchhHHhH-HHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCCc
Q 008804 212 PLYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPS 280 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~ 280 (553)
..++.|.+|++.|+...+. ++....+|.++++.+.|++.+.. |||..|++.+++.++..++. +.+++.
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999887665 67778899999999999999987 89999999888877665544 344443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=129.75 Aligned_cols=181 Identities=14% Similarity=0.053 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 432 (553)
|...+..++.++........+.+..|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSA-TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 344455555555555555567777787778888887 8899999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH--
Q 008804 433 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-- 510 (553)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-- 510 (553)
+.++..+. + ++..+...-++.+.......+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.+
T Consensus 86 ~~~~~~~~-----~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (412)
T TIGR02332 86 ASTATMFA-----T-GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD 159 (412)
T ss_pred HHHHHHHh-----c-CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77776642 2 233333344445555555566666788999999999999999999999999999999998874
Q ss_pred ----hhCchhHHHHHHHHHHHHHHHHHHhcccCC
Q 008804 511 ----LLGAENIFLLFAAIAFLAVLFIVRTVPETK 540 (553)
Q Consensus 511 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (553)
..||++.|++.++..++..++.+++.||++
T Consensus 160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 368999999988887776666666677654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=133.68 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=123.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL--GVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~ 209 (553)
++.++.+.+++.+.+.++..++.++.|++.||+|||+.+.++.++.+++.++..+.++. +.+++..++.|++.+...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 314 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS 314 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence 78888899999999999999999999999999999999999999999988888776643 3455667888998888888
Q ss_pred hhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHH
Q 008804 210 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMG 271 (553)
Q Consensus 210 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~ 271 (553)
....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.. ||++.|++.+++.++..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GFEYTFIVTGAFALTSL 375 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999988877 89999999888777654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=135.90 Aligned_cols=147 Identities=18% Similarity=0.301 Sum_probs=126.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHhhhhhh
Q 008804 134 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 134 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~ 209 (553)
.+..+.+.+.++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999998877776632 346778889999999998889
Q ss_pred hhhhHhhhccccccchhHHhHHH-HHHHHHHHHHHHhhhcccCCCC-----chHHHHhhhHHHHHHHHHHh-cccCCc
Q 008804 210 GAPLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGM-WSLPPS 280 (553)
Q Consensus 210 ~~~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~l~~~l~~~~~-----~wr~~f~~~~~~~~~~~i~~-~~~~e~ 280 (553)
....++.|++|+++|++++++.+ ....+|.++||+++|.+.+..+ ||+..|++.+++.++..++. ++++|+
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999997 6788999999999999887642 69999999888888776655 556654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-12 Score=121.26 Aligned_cols=176 Identities=20% Similarity=0.189 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHH
Q 008804 355 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 434 (553)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 434 (553)
.++...+..|...+.-....-.+|.+-++.+.+. ..+|...+.+.++..++.++...+.+|+.||++++....++.++.
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~-~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n 92 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSE-GAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN 92 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 3444444444444444567778899999999988 899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCc
Q 008804 435 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA 514 (553)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 514 (553)
++..+ ..++..+...=+..+..-..+.++..++..++.|+++|++++++......++..+|.++..++-|.+||
T Consensus 93 ~l~al------Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GW 166 (394)
T COG2814 93 LLSAL------APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGW 166 (394)
T ss_pred HHHHH------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhH
Confidence 88776 334445555555555555566677889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcc
Q 008804 515 ENIFLLFAAIAFLAVLFIVRTVP 537 (553)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~ 537 (553)
+..|+..+++.++..+..+..+|
T Consensus 167 R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999998888888
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-12 Score=126.89 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=126.0
Q ss_pred HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 008804 373 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 452 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (553)
.....|.+.++.+.+. .+.++......++..++.+..|++.||+|||+.+..+.++.+++.+..... ++.+ .+
T Consensus 28 ~~~~~~~l~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~-~l 100 (390)
T PRK03545 28 PVGLLSDIAQSFHMQT-AQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----WNFT-VL 100 (390)
T ss_pred HHcchHHHHhHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----ccHH-HH
Confidence 3445688888888887 889999999999999999999999999999999999988888877666542 2223 33
Q ss_pred HHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHH
Q 008804 453 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 532 (553)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 532 (553)
...-+..+.......+....++.+.+|+++|++++|+......+|..++|.+.+.+.+..||++.|++.+++.++..++.
T Consensus 101 ~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 101 LISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 33333344443344456668889999999999999999999999999999999999999999999999988877776655
Q ss_pred HHhcccC
Q 008804 533 VRTVPET 539 (553)
Q Consensus 533 ~~~~~~~ 539 (553)
+...|+.
T Consensus 181 ~~~~~~~ 187 (390)
T PRK03545 181 IKLLPLL 187 (390)
T ss_pred HHhCCCC
Confidence 5555553
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=128.59 Aligned_cols=166 Identities=20% Similarity=0.095 Sum_probs=129.8
Q ss_pred ChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCch
Q 008804 369 GQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFP 448 (553)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (553)
+........|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++..++.+..... + .
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~-~ 92 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPA-SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----N-N 92 (385)
T ss_pred HHHHhcccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----c-c
Confidence 33345556677888888887 789999999999999999999999999999999998888877777766542 2 2
Q ss_pred HHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHH
Q 008804 449 LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLA 528 (553)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 528 (553)
...+....+..+.......+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.+..||+..+++.+++.++.
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL 172 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 33333333444444444455666889999999999999999999999999999999999999999999999888877777
Q ss_pred HHHHHHhcccCCC
Q 008804 529 VLFIVRTVPETKG 541 (553)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (553)
.++.++..||+++
T Consensus 173 ~~~~~~~~~~~~~ 185 (385)
T TIGR00710 173 SALIFFILPETLP 185 (385)
T ss_pred HHHHHHhCCCCCC
Confidence 7666666666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-12 Score=126.16 Aligned_cols=160 Identities=21% Similarity=0.200 Sum_probs=125.3
Q ss_pred HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 008804 373 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 452 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (553)
.....|.+.++.+.+. .+.+.......++..++.++.|++.||+|||+.+..+.++.+++.++.... . +...+
T Consensus 39 ~~~~l~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~-~~~~l 111 (394)
T PRK10213 39 PVSLLTPMAQDLGISE-GVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----N-SFSLL 111 (394)
T ss_pred HHhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----C-hHHHH
Confidence 3345677788888887 788999889999999999999999999999999999998888876665431 2 23333
Q ss_pred HHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHH
Q 008804 453 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 532 (553)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 532 (553)
...-+..+.......+....++.|.+|+++|+.+.++......+|..++|.+.+.+.+..||++.|++.+++.++..++.
T Consensus 112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~ 191 (394)
T PRK10213 112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWI 191 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445566778889999999999999999999999999999999999999999999998877666655544
Q ss_pred HHhcccC
Q 008804 533 VRTVPET 539 (553)
Q Consensus 533 ~~~~~~~ 539 (553)
....|+.
T Consensus 192 ~~~~p~~ 198 (394)
T PRK10213 192 IKSLPSL 198 (394)
T ss_pred HHHCCCC
Confidence 4445654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-13 Score=128.71 Aligned_cols=145 Identities=37% Similarity=0.512 Sum_probs=136.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKR-ELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
+|.++.+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.++..+.++.+.+++..++.|++.+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 285 (352)
T cd06174 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA 285 (352)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchh
Confidence 4789999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhccc
Q 008804 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 277 (553)
Q Consensus 211 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~ 277 (553)
..+++.|..|+++|++.+++.+....+|..+++.+.+.+.+.. +|+..+++.+++.++..+..+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 286 LLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999999988877 99999999999998887766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.7e-13 Score=130.54 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhh
Q 008804 138 QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAE 217 (553)
Q Consensus 138 ~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 217 (553)
+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45667778889999999999999999999999999999999988888888898888999999999999888888888889
Q ss_pred ccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCC
Q 008804 218 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 279 (553)
Q Consensus 218 ~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e 279 (553)
.+|+++|+++.++++....+|..+++.+.+.+.+.. ||++.|++.+++.++..++.+++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999988877 8999999998888887776655544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=130.07 Aligned_cols=178 Identities=19% Similarity=0.141 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHH
Q 008804 355 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 434 (553)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 434 (553)
.++...+..+...........+.|.+.++.+.+. .+.+++.....++.+++.++.|+++||+|||+.+..+.++..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 96 (398)
T TIGR00895 18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDP-VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFT 96 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333333344333334456677888888888876 788999999999999999999999999999999998888777776
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCc
Q 008804 435 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA 514 (553)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 514 (553)
+++... . ....+....++.+.......+...+++.|.+|++.|+++.++.+....+|..+++.+.+.+.+..||
T Consensus 97 ~~~~~~-----~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 97 LLCALA-----T-NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred HHHHHc-----c-chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 665532 2 2333333444444444455567778999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 515 ENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
+..+++.+++.++..++.+.+.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 171 RSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred eeehhhhhhHHHHHHHHHHHhCCCC
Confidence 9988888766666666566666654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=130.87 Aligned_cols=147 Identities=22% Similarity=0.193 Sum_probs=128.4
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
.|.+..+.+++.+.+.++..++.++.|++.||+|||+.+..+.+..+++.++..+.++.+.+.+..++.|++.+...+..
T Consensus 250 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 329 (406)
T PRK11551 250 QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVL 329 (406)
T ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHH
Confidence 68889999999999999999999999999999999999998887777777777778888888888899999888888889
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccC
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 278 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~ 278 (553)
.+++.|.+|+++|+++.++.+....+|..++|.+++.+.+...+|...+++.+...++..++.+++.
T Consensus 330 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 330 YALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888765677777777777666666555443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-12 Score=126.61 Aligned_cols=171 Identities=14% Similarity=0.101 Sum_probs=129.4
Q ss_pred HHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHH
Q 008804 361 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 440 (553)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 440 (553)
+.++..+.....+..+.|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+.++.++.+++.++....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 108 (434)
T PRK11663 30 LGYALFYFTRKSFNAAMPEMLADLGLSR-SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS 108 (434)
T ss_pred HHHHHHHHhhhhHHHhhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 3333333333356778889999988887 789999999999999999999999999999999999888888877766542
Q ss_pred HHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHH
Q 008804 441 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 520 (553)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 520 (553)
. ....+....+..+.......+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+..||++.|++
T Consensus 109 -----~-~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 109 -----S-SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred -----h-HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 2 2222222223333333334455668889999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhccc
Q 008804 521 FAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~ 538 (553)
.+++.++..++..++.+|
T Consensus 183 ~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 183 AGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 887766555544444444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-12 Score=124.42 Aligned_cols=161 Identities=11% Similarity=0.039 Sum_probs=120.0
Q ss_pred hhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchH
Q 008804 371 PSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 449 (553)
Q Consensus 371 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (553)
.....++|.+++ +.|.+. .+.++..+...++.+++.++.|+++||+|||+.+..+.++..++.+.+.+. ++.+
T Consensus 24 ~~~~~~l~~~l~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----~~~~ 97 (395)
T PRK10054 24 GATLPFMTIYLSRQYSLSV-DLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-----NNVT 97 (395)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----hHHH
Confidence 345666676665 567777 899999999999999999999999999999999988887777766655442 2222
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHH
Q 008804 450 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV 529 (553)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 529 (553)
..++... ..+.......+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .||+..|.+.+++.++..
T Consensus 98 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~ 175 (395)
T PRK10054 98 LVVLFFA-LINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPL 175 (395)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHH
Confidence 2222222 22222233455666888999999999999999999999999999999998875 689999998887777765
Q ss_pred HHHHHhcccC
Q 008804 530 LFIVRTVPET 539 (553)
Q Consensus 530 ~~~~~~~~~~ 539 (553)
++..++.++.
T Consensus 176 i~~~~~~~~~ 185 (395)
T PRK10054 176 VFIQIWVQRS 185 (395)
T ss_pred HHHHHHHhcc
Confidence 5555544433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=109.82 Aligned_cols=345 Identities=14% Similarity=0.133 Sum_probs=216.7
Q ss_pred ccCchhHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhh
Q 008804 132 FNLSAVQLG-LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g-~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++.-+.++.+.+-+..++.|++.+ ...+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a-~eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATA-AEVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHH
Confidence 578887764 56666677888899999999999999999999999999999999999999999999999999887 4777
Q ss_pred hhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCC-CchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhc
Q 008804 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV 289 (553)
Q Consensus 211 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~ 289 (553)
-++++-...|+++-.++.+...+..-+|..++.++|-.++... .+.+...++......++++..+++|..++-...++.
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~ 193 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK 193 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc
Confidence 8899999999999999999999999999999988888776632 266777777777777777777888876642222211
Q ss_pred cCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhcccc-------ccccccceecccccchhHHHHHHHHH
Q 008804 290 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD-------EKSEGSFLEVFQGPNLKAFIIGGGLV 362 (553)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (553)
...... ....+.++.++..+.. .+. ........ ..-...+++..++|..+... +.
T Consensus 194 ~~~~~~----------~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WS----lW 255 (412)
T PF01770_consen 194 PPAEQD----------ANESESDKMNESPESS--SST--EKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWS----LW 255 (412)
T ss_pred Cccccc----------cccccccccccccccc--ccc--ccCcccccchHHHHHHHHHHHHHHHhcCchHHHHH----HH
Confidence 100000 0000000000000000 000 00000000 00112234455666544333 34
Q ss_pred HHHHhhChhhHHHhHHHHHHHc---CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHH
Q 008804 363 LFQQITGQPSVLYYAGPILQSA---GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 439 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 439 (553)
+....+++..+..|...+.++. .... ...|.+-+...+.+.++.+..|++..++.+..-+.++......+.+++..
T Consensus 256 Wa~atcgy~qv~nYvQ~LW~~v~~~~~~~-vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm 334 (412)
T PF01770_consen 256 WAFATCGYYQVINYVQSLWDTVPPSDNES-VYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLM 334 (412)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCCCCc-ccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556777777777776 2222 45677777888888888999999866665544444333322222222221
Q ss_pred HHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHH
Q 008804 440 YYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 500 (553)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 500 (553)
.. .++.+...+..+++.+.+.+... +....++.....+.-|..+|+++++..+-..+
T Consensus 335 ~~---t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 335 SF---TGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred HH---hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 11 24556666666666666665443 33344555556677888889887665554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=125.31 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=127.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
+|.++.+.+++.+...+...++.++.|++.||+|||+++.++.++..+..++..+.++.+.+++.+++.|++.+...+..
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 309 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG 309 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999888888888899999999999999999988887777766666677888888899999999999888888
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCC
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 279 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e 279 (553)
..++.|..|+ +++++.++++....+|..++|.+++.+.+.. ||+..|++.+++.++..++.++++|
T Consensus 310 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 310 MLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHheecC
Confidence 8999998875 5679999999999999999999999988877 8999999999988887777766543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-12 Score=125.35 Aligned_cols=173 Identities=17% Similarity=0.076 Sum_probs=130.5
Q ss_pred HHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHH
Q 008804 361 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 440 (553)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 440 (553)
...+....+........|.+.++.+.+. .+.+.......++..++.++.|+++||+|||+.+..+.++..++.......
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~ 88 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADLNASE-AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444456677888888888877 788889999999999999999999999999999998887777776665531
Q ss_pred HHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHH
Q 008804 441 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLL 520 (553)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 520 (553)
.+.+. +....++.+.......+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..|++
T Consensus 89 -----~~~~~-~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~ 162 (392)
T PRK10473 89 -----ETSSL-FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT 162 (392)
T ss_pred -----CcHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence 22222 222233333333334445668889999999999999999999999999999999988888899999998
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q 008804 521 FAAIAFLAVLFIVRTVPETK 540 (553)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~ 540 (553)
.+++.++..++.+...+|++
T Consensus 163 ~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 163 MAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 88887777776666666654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-12 Score=117.75 Aligned_cols=178 Identities=13% Similarity=0.070 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHH
Q 008804 355 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 434 (553)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 434 (553)
.++..++.+...+..=-.+..-.|.+.++.+++. .+.|.+.+.+.+..-++.++.|.++||.+.|..+..++++.++..
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk-~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n 108 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSK-TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH
Confidence 3333444444433333346777788888888877 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHh--HHhHHhh
Q 008804 435 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF--SPLKELL 512 (553)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~--g~l~~~~ 512 (553)
+++.+. +....+.++..+.+.+...-.|.....+..-+|+++||+..++.|+..++|+.+.|.+. +.+.++.
T Consensus 109 il~Gfs------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~ 182 (448)
T COG2271 109 ILFGFS------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG 182 (448)
T ss_pred HHHhhh------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence 999873 35555566666666666665666668889999999999999999999999999999999 8999888
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 513 GAENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 513 g~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
+|+..|++-++++++.+++.++..+++
T Consensus 183 ~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 183 GWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999998888887776654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=107.01 Aligned_cols=233 Identities=15% Similarity=0.170 Sum_probs=151.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
+|.+..|++.+....+...++..++.|.++||+|||+..++.+++++++++.. ..++++.++++|++.|++.+..+.+-
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999654 56899999999999999999999888
Q ss_pred hhHhh-hcc----ccccchhHHhHHH-HHHHHHHHHHHHhhhcccCCCC-chHHHHhhhHHHHHHHHHHhc-ccCCchhH
Q 008804 212 PLYIA-ETC----PSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMW-SLPPSPRW 283 (553)
Q Consensus 212 ~~~i~-~~~----~~~~r~~~~~~~~-~~~~lG~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~i~~~-~~~e~p~~ 283 (553)
-++.. |.- |++..+..++... ...++-.+++.+++-++.+..+ |-..+|....++.++..++.. .-+|+..
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg- 221 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG- 221 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCC-
Confidence 77653 432 2222222222222 1223334445555555554431 347788888888777666553 3344321
Q ss_pred HHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHH
Q 008804 284 LLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVL 363 (553)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (553)
+. .++. +. .+.-...++.++++|+.+.+ .....
T Consensus 222 --------~~--~~~~----------------------~~------------~~~~~~a~~~i~~d~ril~L---G~~qs 254 (354)
T PF05631_consen 222 --------DT--SSSS----------------------SL------------SGSFREAWRAILSDPRILLL---GLIQS 254 (354)
T ss_pred --------Cc--cccc----------------------ch------------HHHHHHHHHHHHcCchhHHH---HHHHH
Confidence 00 0000 00 00001113344555544333 33444
Q ss_pred HHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008804 364 FQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 416 (553)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 416 (553)
+.....+..+..|.|.+- ..+.....|+++..+.++.++|+.+..++..+
T Consensus 255 lFE~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 255 LFEGSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555555556777888765 22222468899999999999999888765543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-12 Score=128.66 Aligned_cols=180 Identities=15% Similarity=0.058 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHH
Q 008804 354 AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 433 (553)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 433 (553)
..+...++..+......+.+..-.|.+.++.+.+. .+.++....+.++..++.+..|+++||+|||+.+..+.++..++
T Consensus 6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~-~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~ 84 (495)
T PRK14995 6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASG-NELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA 84 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34444555555555555667788899998888776 78889999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhccc-CCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 008804 434 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI-FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 512 (553)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 512 (553)
.+..... + +...++..-++.+.+.....+.....+.+. .|+++|+++.|+......+|..++|.+.|.+.++.
T Consensus 85 ~~~~~~a-----~-~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~ 158 (495)
T PRK14995 85 SLAAAFS-----P-TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF 158 (495)
T ss_pred HHHHHHc-----C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7776642 2 333333333334444334444444445454 47789999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcccCC
Q 008804 513 GAENIFLLFAAIAFLAVLFIVRTVPETK 540 (553)
Q Consensus 513 g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (553)
||++.|++...+.++..++.+++.|+.+
T Consensus 159 gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 159 YWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999988777777766666666543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-12 Score=124.60 Aligned_cols=141 Identities=15% Similarity=0.048 Sum_probs=128.6
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
+|.++.++|++.+...++..++.+++|++.||+|+|+.+.++.++.++..++.+++++.+.+++.++++|++.+...+..
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~ 314 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccccchhHHhHHH-HHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhc
Q 008804 212 PLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW 275 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~ 275 (553)
..++.+. |+++|+++.++++ ...++|..+|+.++|.+.+.. |+ ..|++.+++.++..++.+
T Consensus 315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHHH
Confidence 9999998 9999999999986 577899999999999999988 76 667777777776655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=123.06 Aligned_cols=179 Identities=14% Similarity=0.080 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 432 (553)
++......+.++.............|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTT-VDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444445555555555567777788888888887 7899999999999999999999999999999999988887777
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 008804 433 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 512 (553)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 512 (553)
+.++..+. . .+..+....++.+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..
T Consensus 90 ~~~~~~~~-----~-~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 163 (405)
T TIGR00891 90 GTLACGFA-----P-GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163 (405)
T ss_pred HHHHHHHh-----c-cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76665542 2 23333334444444444555566688899999999999999999999999999999999988877
Q ss_pred C--chhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 513 G--AENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 513 g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
+ |+..|++.++..++. ++.....||+
T Consensus 164 ~~~w~~~f~~~~~~~~~~-~~~~~~~~~~ 191 (405)
T TIGR00891 164 GDGWRALFFISILPIIFA-LWLRKNIPEA 191 (405)
T ss_pred CccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence 6 888877654444433 3334445554
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=131.76 Aligned_cols=172 Identities=19% Similarity=0.144 Sum_probs=135.9
Q ss_pred HHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHH
Q 008804 362 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 441 (553)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 441 (553)
..+.............|.+.++.+.+. .+.++......++.+++.++.|++.||+|||+.+..+.++..++.++...
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-- 86 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTIAGDLGSSL-SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV-- 86 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCh-hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC--
Confidence 333333344457778888989988876 78899999999999999999999999999999999988888877766553
Q ss_pred HhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHH
Q 008804 442 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 521 (553)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 521 (553)
......++...++.+.......+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..||++.|++.
T Consensus 87 ----~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 87 ----APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred ----cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 2233344444455555555566677789999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcccCC
Q 008804 522 AAIAFLAVLFIVRTVPETK 540 (553)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~ 540 (553)
+.+.++..++.+++.++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hHHHHHHHHHHHHHcCCcc
Confidence 8777776666666666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=126.96 Aligned_cols=161 Identities=17% Similarity=0.119 Sum_probs=128.9
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
.+....|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++..++..++... . +...
T Consensus 12 ~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 84 (399)
T TIGR00893 12 NLSFAAPMLQEDLGLSA-AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----G-AYVS 84 (399)
T ss_pred hhhHhHHHHHHhhCCCh-hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----c-CHHH
Confidence 35566677778888877 789999999999999999999999999999999998888777777666542 2 3333
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 531 (553)
+....++.+.+.....+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+|++.|++.+++.++..++
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 33444444544555566777899999999999999999999999999999999999999999999999888877776666
Q ss_pred HHHhcccC
Q 008804 532 IVRTVPET 539 (553)
Q Consensus 532 ~~~~~~~~ 539 (553)
.++..+++
T Consensus 165 ~~~~~~~~ 172 (399)
T TIGR00893 165 WLKFIPDP 172 (399)
T ss_pred hhheecCC
Confidence 65555554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=127.07 Aligned_cols=137 Identities=21% Similarity=0.201 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhc
Q 008804 139 LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET 218 (553)
Q Consensus 139 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 218 (553)
.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45667778888899999999999999999999999999999988888888988888999999999998888888889999
Q ss_pred cccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcc
Q 008804 219 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 276 (553)
Q Consensus 219 ~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~ 276 (553)
+|+++|+++.++++....+|..++|.+.+.+.+.. ||+..|++.+++.++..+..++
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998887 8999999999888877665543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-12 Score=122.47 Aligned_cols=162 Identities=14% Similarity=0.037 Sum_probs=126.8
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
......|.+.++.|.+. .+.++......++..++.++.|++.||+|||+.+..+..+.+++.++.... ++ +..
T Consensus 21 ~~~~~l~~~~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-----~~-~~~ 93 (382)
T PRK10091 21 GIMGVLTELAHDVGISI-PAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-----SS-YLM 93 (382)
T ss_pred HHHhChHHHHHHcCCCH-HHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-----Cc-HHH
Confidence 45567788888888887 788999999999999999999999999999999999988888877766542 22 333
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 531 (553)
+...-++.+.......+.......+.+|+++|++++++......++..+++.+.+.+.+..||++.|.+.+++.++..+.
T Consensus 94 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 94 LAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 33333344443333344555678889998899999999999999999999999999999899999999988877776665
Q ss_pred HHHhcccCC
Q 008804 532 IVRTVPETK 540 (553)
Q Consensus 532 ~~~~~~~~~ 540 (553)
.++..|+.+
T Consensus 174 ~~~~lp~~~ 182 (382)
T PRK10091 174 IYFWVPDIR 182 (382)
T ss_pred HHHhCCCCC
Confidence 566667643
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=125.39 Aligned_cols=170 Identities=18% Similarity=0.122 Sum_probs=129.9
Q ss_pred HHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHH
Q 008804 362 VLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 441 (553)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 441 (553)
..+......+.+..+.|.+.++.|.+. .+.++......++..++.++.|+++||+|||+.+..+.++..++.+.....
T Consensus 18 ~~~~~~~~~~~~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~- 95 (471)
T PRK10504 18 GFFMQSLDTTIVNTALPSMAQSLGESP-LHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS- 95 (471)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-
Confidence 334444444467778999999988887 778888888888999999999999999999999988877777666554431
Q ss_pred HhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHH
Q 008804 442 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLF 521 (553)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 521 (553)
. +...+....++.+.+.....+....++.|.+|+++|+++.|+.+....+|..++|.+.|.+.+..||++.|.+.
T Consensus 96 ----~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 96 ----G-TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred ----C-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 2 22233333444444444555667788899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhccc
Q 008804 522 AAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 522 ~~~~~~~~~~~~~~~~~ 538 (553)
..+..+..++.....++
T Consensus 171 ~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 171 IPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 77777666655555554
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=128.01 Aligned_cols=138 Identities=21% Similarity=0.298 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhh
Q 008804 138 QLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAE 217 (553)
Q Consensus 138 ~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 217 (553)
..+.+.+++.++..++.+++|+++||+|||+.+..+..+.+++.+...+.++.+.+++.+++.|++.+...+...+++.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 45677778888899999999999999999999999999888888888888889999999999999999999999999999
Q ss_pred ccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcc
Q 008804 218 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 276 (553)
Q Consensus 218 ~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~ 276 (553)
..++++||+.+++......+|..+||.+++.+.+.. ||++.|++.+++.++..+..++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887 8999999999888887765543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=124.38 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=125.6
Q ss_pred hHHHhHH-HHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHH
Q 008804 372 SVLYYAG-PILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 450 (553)
Q Consensus 372 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (553)
......| .+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+.++.+++.+...+ . .+.+
T Consensus 14 ~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~----~~~~- 86 (352)
T PF07690_consen 14 IISPALPLYLAEELGLSP-SQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF-A----SNFW- 86 (352)
T ss_dssp HHHHHHH-HHHCCSTTTS-HCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-H----CCHH-
T ss_pred HHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh-h----hhHH-
Confidence 3555666 5556677777 78999999999999999999999999999999999998888888444432 1 2333
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 451 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
.+....++.+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|++.+++.++..+
T Consensus 87 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 87 LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 44445555555555666777799999999999999999999999999999999999999888999999999988888877
Q ss_pred HHHHhcc
Q 008804 531 FIVRTVP 537 (553)
Q Consensus 531 ~~~~~~~ 537 (553)
+...+.+
T Consensus 167 l~~~~~~ 173 (352)
T PF07690_consen 167 LFILFLP 173 (352)
T ss_dssp HHHCCC-
T ss_pred hHhhhhh
Confidence 5444444
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.9e-12 Score=121.83 Aligned_cols=161 Identities=17% Similarity=0.038 Sum_probs=123.9
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
......|.+..+.+.+. .+.++......++.+++.++.|+++||+|||+.+..+.++..++.+++....... ..+...
T Consensus 17 ~~~~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 94 (365)
T TIGR00900 17 ITQVALPLYVLAGTGSA-SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG-GLNIWQ 94 (365)
T ss_pred HHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC-CCcHHH
Confidence 35556677777777776 7899999999999999999999999999999999988887777666655433211 113333
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 531 (553)
+....+..+.......+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..|++.++..++..++
T Consensus 95 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 95 VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33334444444445556677899999999999999999999999999999999999999999999988877766665554
Q ss_pred HHH
Q 008804 532 IVR 534 (553)
Q Consensus 532 ~~~ 534 (553)
.+.
T Consensus 175 ~~~ 177 (365)
T TIGR00900 175 IVS 177 (365)
T ss_pred HHh
Confidence 443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=121.83 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=121.8
Q ss_pred HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 008804 373 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 452 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (553)
...-+|.+.++.+.+. ...+.....+.++..++.++.|+++||+|||+.+..+..+..++.+..... + +...+
T Consensus 35 ~~p~l~~i~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~-~~~~l 107 (413)
T PRK15403 35 IQPGIINVVRDFNADV-SLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----T-SMTQF 107 (413)
T ss_pred hccCHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----C-CHHHH
Confidence 3334455667777776 778888888899999999999999999999999998887777766655531 2 23233
Q ss_pred HHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHH
Q 008804 453 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 532 (553)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 532 (553)
...-++.+.......+....+..|.+|++++++++++.+....++..++|.+.+.+.+..||++.|++.+++.++..++.
T Consensus 108 ~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 108 LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333345567788999999999999999999999999999999999988899999999888877776655
Q ss_pred HHhcccCC
Q 008804 533 VRTVPETK 540 (553)
Q Consensus 533 ~~~~~~~~ 540 (553)
++..||++
T Consensus 188 ~~~lp~~~ 195 (413)
T PRK15403 188 LLAMPETV 195 (413)
T ss_pred HHhCCCCc
Confidence 66667654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-11 Score=121.46 Aligned_cols=160 Identities=9% Similarity=0.006 Sum_probs=114.5
Q ss_pred hhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchH
Q 008804 370 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 449 (553)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (553)
......+.|.+.++.+.+. .+.+.......++..++.++.|+++||+|||+.+..+.++.+++.++.... .+..
T Consensus 52 ~~~~~~~~~~l~~~~gls~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~s~~ 125 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTK-SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----SSAT 125 (476)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----cCHH
Confidence 3445666778888888876 778888888888999999999999999999999988877777766655442 2222
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH---------hhCchhHHHH
Q 008804 450 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---------LLGAENIFLL 520 (553)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~~ 520 (553)
.+....++.+++.....+ ...++.|.+|+++|+.++|+.+....+|..+++.+.+.+.. ..||++.|++
T Consensus 126 -~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i 203 (476)
T PLN00028 126 -GFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFV 203 (476)
T ss_pred -HHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence 222222333333333333 33567899999999999999988888888887776655432 1479999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 008804 521 FAAIAFLAVLFIVRTVP 537 (553)
Q Consensus 521 ~~~~~~~~~~~~~~~~~ 537 (553)
.+++.++..++.+++.+
T Consensus 204 ~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 204 PGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 88888776665555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=128.93 Aligned_cols=141 Identities=14% Similarity=0.170 Sum_probs=120.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL--GRKRELI--IAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLA 207 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grk~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 207 (553)
+|.+..+.+++.++..++..++.++.|+++||. ++|+... .+.++.+++.+++.+.++++.+++.+++.|++.+..
T Consensus 271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~ 350 (455)
T TIGR00892 271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV 350 (455)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH
Confidence 788999999999999999999999999999973 3443333 344445566667777889999999999999999999
Q ss_pred hhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHH
Q 008804 208 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI 272 (553)
Q Consensus 208 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i 272 (553)
.+...+++.|.+|++++++++++++....+|.++||.+++.+.+..++|++.|++.+++.++..+
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 351 GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999988775799999999887766554
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=121.72 Aligned_cols=183 Identities=18% Similarity=0.187 Sum_probs=132.6
Q ss_pred chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHH
Q 008804 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI 430 (553)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 430 (553)
+.+...+...+..+........+....|.+.++.+.+. .+.+.......++..++.++.|+++||+|||+.+..+..+.
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGA-EWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 33444444444444444344445555677778888876 78888889999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH
Q 008804 431 ALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 510 (553)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 510 (553)
+++.+..... .+ ...+....++.+.......+.....+.|.+|++.|.++.++......++..++|.+.+.+.+
T Consensus 89 ~~~~~~~~~~-----~~-~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 162 (406)
T PRK15402 89 ILTCLAILLA-----QS-IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH 162 (406)
T ss_pred HHHHHHHHHH-----cc-HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776665432 22 22233333333333333345566778899999999999999888888899999999999999
Q ss_pred hhCchhHHHHHHHHHHHHHHHHHHhcccCC
Q 008804 511 LLGAENIFLLFAAIAFLAVLFIVRTVPETK 540 (553)
Q Consensus 511 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (553)
..+|++.|++.+++.++..+..++..||++
T Consensus 163 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 163 VLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 889999999888887777665656666654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-11 Score=120.54 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHH
Q 008804 354 AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 433 (553)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 433 (553)
+......+.++........+....|.+.++.+.+. .+.+.......++..++.++.|++.||+|||+.+..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~-~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~ 85 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPV-SSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333333333333333456677788888888887 78899999999999999999999999999999998888777777
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH-hh
Q 008804 434 LLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-LL 512 (553)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~ 512 (553)
.++.... + +...+....++.+.......+....++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+ ..
T Consensus 86 ~~l~~~~-----~-~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 159 (394)
T PRK03699 86 VAGLMFS-----H-SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSI 159 (394)
T ss_pred HHHHHHc-----c-hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7666541 2 222333333333333333344555788899999999999999888888899999999888765 46
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 008804 513 GAENIFLLFAAIAFLAVLFIV 533 (553)
Q Consensus 513 g~~~~~~~~~~~~~~~~~~~~ 533 (553)
||++.|.+.+++.++..++.+
T Consensus 160 gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 160 EWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 899999888777666554433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=123.99 Aligned_cols=159 Identities=16% Similarity=0.070 Sum_probs=121.9
Q ss_pred hhChhhHHHhHHHHHHH---cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhhHhHHHHHHHHHHHHHHHHH
Q 008804 367 ITGQPSVLYYAGPILQS---AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYK 442 (553)
Q Consensus 367 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 442 (553)
..+++.+..++|.|+++ .|.+. .+++.......++..++.+++|+++|| +|||+.+..+.++.+++.+++...
T Consensus 23 ~~~~~~~~~~L~~yl~~~~~lg~s~-~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-- 99 (475)
T TIGR00924 23 RFSYYGMQGILAVYLVQQAGLGFSQ-EQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-- 99 (475)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc--
Confidence 33445577788888865 56766 789999999999999999999999999 899999999999888887776641
Q ss_pred hhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccc---hhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHH
Q 008804 443 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT---RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFL 519 (553)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 519 (553)
.+.+ .+.....+.+.+.....+...++..+.+|+++ |+++.++.+...++|..++|.+.+.+.+..||+..|.
T Consensus 100 ---~~~~-~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~ 175 (475)
T TIGR00924 100 ---IYPD-LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFN 175 (475)
T ss_pred ---ccHh-HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 2222 22223333344444455666688888888654 8889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 008804 520 LFAAIAFLAVLFI 532 (553)
Q Consensus 520 ~~~~~~~~~~~~~ 532 (553)
+.++..+++.++.
T Consensus 176 ~~~~~~~~~~l~~ 188 (475)
T TIGR00924 176 LAAVGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 8776655554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=120.36 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=121.8
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
......|.+.++.+.+. .+.+.......++..++.++.|+++||+|||+.+..+..+..++.+..... . ....
T Consensus 26 ~~~p~~~~i~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 98 (394)
T PRK11652 26 IYVPAIADMARDLNVRE-GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----H-SLTV 98 (394)
T ss_pred HHhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----c-cHHH
Confidence 34445677888888887 789999999999999999999999999999999998887777766655431 2 2223
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 531 (553)
+....++.+.......+....+..|.++.++++.+.++.+....++..++|.+.+.+.+..||+..|++.+++.++..++
T Consensus 99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~ 178 (394)
T PRK11652 99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 33333333333333334555677888888899999999999999999999999999999889999999887776666555
Q ss_pred HHHhcccCC
Q 008804 532 IVRTVPETK 540 (553)
Q Consensus 532 ~~~~~~~~~ 540 (553)
..++.||++
T Consensus 179 ~~~~~~~~~ 187 (394)
T PRK11652 179 MARWMPETR 187 (394)
T ss_pred HHHhCCccC
Confidence 555666643
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.6e-12 Score=123.78 Aligned_cols=188 Identities=15% Similarity=0.037 Sum_probs=132.7
Q ss_pred eecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhh
Q 008804 344 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 423 (553)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 423 (553)
+.+.+++.++..++...+..+.. .......|.+.++.+.+. .+.+.......++.+++.++.|+++||+|||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~-~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l 85 (417)
T PRK10489 11 SLLKTHPAFRAVFIARFISIFGL----GLLGVAVPVQIQMMTGST-LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI 85 (417)
T ss_pred HHHHhCCChhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE
Confidence 34445677776665544444433 346667788888877765 7899999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHH
Q 008804 424 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 503 (553)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 503 (553)
..+..+.+++...+...... ..+....+....+..+.......+....++.+..|+++|+++.++.+....+|..++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 164 (417)
T PRK10489 86 LLARGTCGLGFIGLALNAFL-PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPA 164 (417)
T ss_pred EehHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHH
Confidence 88877776666554432111 12223333333333333333333444577889999999999999999999999999999
Q ss_pred HhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhccc
Q 008804 504 AFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 504 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
+.+.+.+..|+++.+++.++..++..++. +..|+
T Consensus 165 l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 198 (417)
T PRK10489 165 LGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPA 198 (417)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCC
Confidence 99999998899888887776666555433 34444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.1e-12 Score=125.64 Aligned_cols=144 Identities=17% Similarity=0.059 Sum_probs=113.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH--HHHhcchHHHHHHHHHHHHHHhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGAL--TTAYAPGLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~r~l~G~~~g~~~~ 209 (553)
+|.+..+.++..+...++..++.+++|+++||+|||+.++....+..++.. .....++.+.+.+.+++.|++......
T Consensus 289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 368 (467)
T PRK09556 289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQL 368 (467)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHH
Confidence 889999999999999999999999999999999999887765544444332 223345677777888888865443433
Q ss_pred hhhhHhhhccccccchhHHhHHHHHHHH-HHHHHHHhhhcccC------------CCCchHHHHhhhHHHHHHHHHHhcc
Q 008804 210 GAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQIN------------AVGGWRYMYGLSAPLALLMGIGMWS 276 (553)
Q Consensus 210 ~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~g~~l~~~l~~------------~~~~wr~~f~~~~~~~~~~~i~~~~ 276 (553)
.....+.|.+|++.||++.|+.+....+ |..++|.+.|.+.+ .. +|+..|++.++..++..+..++
T Consensus 369 ~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 369 LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLT-GWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccccccccccccc-ChHHHHHHHHHHHHHHHHHHHH
Confidence 3446677999999999999999988886 77999999999988 34 7999999988777776665543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-11 Score=118.59 Aligned_cols=158 Identities=17% Similarity=0.136 Sum_probs=121.4
Q ss_pred HHHhHHHHH-HHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 373 VLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 373 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
...+.+.++ ++.|.+. .+.++......+...+..++.|+++||+|||+.+..+.++..++.+.+... ++.+.
T Consensus 29 ~~~~~~~~~~~~~g~s~-~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-----~~~~~- 101 (400)
T PRK11646 29 VFPLISIRFVDQLGWAA-VMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-----HEPWL- 101 (400)
T ss_pred HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----ccHHH-
Confidence 445555554 5667776 889999999999999999999999999999999999988888877776542 22333
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 531 (553)
+....+..+.......+...+++.+.+|+++|+++.|+.+....+|..++|.+.+.+. ..||++.|++.+++.++..++
T Consensus 102 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 102 LWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445566688899999999999999999999999999999999998 679999999888777766655
Q ss_pred HHHhccc
Q 008804 532 IVRTVPE 538 (553)
Q Consensus 532 ~~~~~~~ 538 (553)
..++.++
T Consensus 181 ~~~~~~~ 187 (400)
T PRK11646 181 NAWLLPA 187 (400)
T ss_pred HHHhCCc
Confidence 5555554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-11 Score=118.60 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=116.2
Q ss_pred ChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc-CCchhhHhHHHHHHHHHHHHHHHHHhhcC
Q 008804 369 GQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKILGG 446 (553)
Q Consensus 369 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (553)
.++.+..++|.++.+ .|.+. .+++.....+.....++.+++|+++||+ |||+.+.++.++..++.+++... ..
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~-~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----~~ 98 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDD-NHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----EI 98 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----hc
Confidence 344577788888765 57776 7888888888889899999999999999 99999999988888877655421 11
Q ss_pred chHHHHHHHHHHHHHHhcCcccchhhhhcccCCcc--chhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHH
Q 008804 447 FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 524 (553)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 524 (553)
......+...+.. .......+...+++.|.+|++ .|.+++++.....++|+.++|.+.+++.+..||+..|.+.++.
T Consensus 99 ~~~~~~l~l~li~-iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig 177 (493)
T PRK15462 99 HPSFLYLSLAIIV-CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG 177 (493)
T ss_pred chhHHHHHHHHHH-HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 1111222111221 222233455568899999975 6999999999999999999999999999999999999887665
Q ss_pred HHHHHHHH
Q 008804 525 AFLAVLFI 532 (553)
Q Consensus 525 ~~~~~~~~ 532 (553)
++++.+..
T Consensus 178 m~l~li~~ 185 (493)
T PRK15462 178 MIAGLVIF 185 (493)
T ss_pred HHHHHHHH
Confidence 55544443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=120.52 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=120.4
Q ss_pred HHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHH
Q 008804 359 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 438 (553)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 438 (553)
..+.++..........+..|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++.+++.+...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 101 (426)
T PRK12307 23 AWLGYVFDGFDFMLIFYIMYLIKADLGLTD-MEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG 101 (426)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 334444443444455666677777888887 7889999999999999999999999999999999999988888777665
Q ss_pred HHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHH
Q 008804 439 AYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF 518 (553)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 518 (553)
+. . ....+...-++.+.......+....++.|.+|+++|+++.++......+|.++++.+.+.+.+..||++.|
T Consensus 102 ~~-----~-~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f 175 (426)
T PRK12307 102 LA-----S-GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF 175 (426)
T ss_pred HH-----h-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHH
Confidence 42 1 23333333344444444455566688899999999999999999999999999999999888888999988
Q ss_pred HHHH
Q 008804 519 LLFA 522 (553)
Q Consensus 519 ~~~~ 522 (553)
++..
T Consensus 176 ~i~~ 179 (426)
T PRK12307 176 FVGL 179 (426)
T ss_pred HHHH
Confidence 7644
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=120.77 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=120.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
.|.+..+.|++.+...++..++.++.|++.||+|+|+++..+..+.+++.+... +...+....++.|++.....|..
T Consensus 230 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~p~~ 306 (381)
T PRK03633 230 QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFILGAAGFTLYPVA 306 (381)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhHHHHH
Confidence 678888999999999999999999999999999999999988888877665543 22344567788888888888999
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhccc
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 277 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~ 277 (553)
.+++.|..|+++++.+.+.+....++|.++||.++|++.+.. +|++.|++.+.+.++..+..++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888888888888899999999999999998887 89999999888887776655543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=120.01 Aligned_cols=160 Identities=18% Similarity=0.161 Sum_probs=126.4
Q ss_pred HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 008804 373 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 452 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (553)
.....|.+.++.+.+. .+.+.......++..++.++.|++.||+|||+.+..+.++.+++...+... . ....+
T Consensus 10 ~~p~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----~-~~~~~ 82 (377)
T PRK11102 10 YLPALPVIAADFGVSA-GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----Q-TIDQL 82 (377)
T ss_pred HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----c-cHHHH
Confidence 4456677788888877 789999999999999999999999999999999999888888877776542 2 22223
Q ss_pred HHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHH
Q 008804 453 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 532 (553)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 532 (553)
....+..+.+.....+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|++.+++.++..++.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 33333444444444455668889999999999999999999999999999999999999999999998888877776666
Q ss_pred HHhcccC
Q 008804 533 VRTVPET 539 (553)
Q Consensus 533 ~~~~~~~ 539 (553)
.++.+|+
T Consensus 163 ~~~~~~~ 169 (377)
T PRK11102 163 FFFIPET 169 (377)
T ss_pred HHhCCcc
Confidence 6666654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.2e-12 Score=123.16 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=126.5
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
.+....|.+.++.+.+. .+.+++.....++..++.++.|+++||+|||+.+..+.++..++.++.... . ....
T Consensus 13 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~ 85 (379)
T TIGR00881 13 NFALAMPYLVEEIGLSK-TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----T-SLWV 85 (379)
T ss_pred hhhhhhHHHHHHhCCCH-hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----h-hHHH
Confidence 46666787788888887 789999999999999999999999999999999999988888877776653 2 3333
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHH-HHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVT-FAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~-~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
+....++.+.+.....+...+++.|.+|+++|+++.++.+....+|..+++ .+.+.+.+..+|+..|++.+++.++..+
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL 165 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 344444445555555667778999999999999999999999999999999 4666677778899998888877776666
Q ss_pred HHHHhcccC
Q 008804 531 FIVRTVPET 539 (553)
Q Consensus 531 ~~~~~~~~~ 539 (553)
+.+++.+++
T Consensus 166 ~~~~~~~~~ 174 (379)
T TIGR00881 166 ICFLLLRDS 174 (379)
T ss_pred HHheeeCCC
Confidence 565555543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-11 Score=121.85 Aligned_cols=162 Identities=12% Similarity=0.014 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHH
Q 008804 355 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 434 (553)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 434 (553)
.+....+..+.............|.+.++.+.+. .+.+.......++..++.++.|++.||+|||+.+..+.++.+++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 99 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTT-VQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGT 99 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3333334444444444456667788888888876 788888888999999999999999999999999998888887777
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCc
Q 008804 435 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGA 514 (553)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 514 (553)
+.+.+. . +...+....++.++......+....++.|.+|+++|+.+.++......+|..+++.+.+.+.+..||
T Consensus 100 ~~~~~~-----~-~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 173 (496)
T PRK03893 100 LACGFA-----P-GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW 173 (496)
T ss_pred HHHHHH-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 766642 2 2333333444444444445556668899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHH
Q 008804 515 ENIFLLFAA 523 (553)
Q Consensus 515 ~~~~~~~~~ 523 (553)
++.|++..+
T Consensus 174 ~~~f~~~~~ 182 (496)
T PRK03893 174 RALFFIGIL 182 (496)
T ss_pred HHHHHHHHH
Confidence 988876433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=116.18 Aligned_cols=161 Identities=14% Similarity=0.041 Sum_probs=119.1
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
.+....|.+.++.+.+. .+.++....+.++..++.+..|+++||+|||+.+.........+.. .... ...+..
T Consensus 9 ~~~~~lp~i~~~~~~s~-~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~-----~~~~~~ 81 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSK-EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD-----PFNYEW 81 (368)
T ss_pred HHHhhHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH-----hccHHH
Confidence 35567788888888887 7899999999999999999999999999998876544433333221 1110 112333
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 531 (553)
+...-+..+...... ........|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|++.+++.++..++
T Consensus 82 l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 82 LLACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 333333334333332 3334556888999999999999999999999999999999999999999999988888877777
Q ss_pred HHHhcccCC
Q 008804 532 IVRTVPETK 540 (553)
Q Consensus 532 ~~~~~~~~~ 540 (553)
.+++.||..
T Consensus 161 ~~~~lp~~p 169 (368)
T TIGR00903 161 VLAALPALP 169 (368)
T ss_pred HHHHcCCCC
Confidence 777777643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-11 Score=119.46 Aligned_cols=163 Identities=16% Similarity=0.093 Sum_probs=114.1
Q ss_pred HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 008804 373 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 452 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (553)
+....|.+.++ +.+. .+.++......++..++.++.|+++||+|||+++..+.++.+++.+.+.+... .......+
T Consensus 48 ~~~~~p~l~~~-g~s~-~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 123 (452)
T PRK11273 48 FALAMPYLVEQ-GFSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--ATSSIAVM 123 (452)
T ss_pred HHHhhHHHHHc-CCCH-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc--ccccHHHH
Confidence 45566766665 7776 88999999999999999999999999999999999988888877776654311 01123233
Q ss_pred HHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHH-HHHHhHHhHHhhCchhHHHHHHHHHHHHHHH
Q 008804 453 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI-VTFAFSPLKELLGAENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 531 (553)
....++.+.+.....+.....+.+.+|+++|++++|+.+....+|+.+ ++.+...+....||+..|++.+++.++..++
T Consensus 124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 124 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 333333343333444444466788899999999999999888888654 4443333333458888998888777776666
Q ss_pred HHHhcccC
Q 008804 532 IVRTVPET 539 (553)
Q Consensus 532 ~~~~~~~~ 539 (553)
.+++.+|+
T Consensus 204 ~~~~~~~~ 211 (452)
T PRK11273 204 AFAMMRDT 211 (452)
T ss_pred HHHHccCC
Confidence 66666553
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.2e-11 Score=116.15 Aligned_cols=155 Identities=19% Similarity=0.113 Sum_probs=115.1
Q ss_pred hHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHH
Q 008804 376 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL 455 (553)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (553)
..|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+..... . ....+...
T Consensus 28 ~~~~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~-~~~~l~~~ 100 (401)
T PRK11043 28 AFKAIQADLQTSA-SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----E-SAAQLLVL 100 (401)
T ss_pred hHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----c-CHHHHHHH
Confidence 3455567778876 889999999999999999999999999999999998887777666655431 2 22222222
Q ss_pred HHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHh
Q 008804 456 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT 535 (553)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 535 (553)
.++.+.......+....+..|.+|+++++...+..+....++..++|.+.+.+.+..||+..|++.+++.++..++.+..
T Consensus 101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 23333322222334456778999988899999998888899999999999999999999999988887777666554444
Q ss_pred cc
Q 008804 536 VP 537 (553)
Q Consensus 536 ~~ 537 (553)
.+
T Consensus 181 ~~ 182 (401)
T PRK11043 181 KP 182 (401)
T ss_pred CC
Confidence 33
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-12 Score=121.13 Aligned_cols=189 Identities=14% Similarity=0.079 Sum_probs=152.3
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 432 (553)
...++...+....+..--+.+..-.+..-+..+.++ ...|++.....++..+..++.|++.||+.|++++.+|..+-.+
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~-s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~ 110 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISD-SELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL 110 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCc-hhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence 344444445555555555555555555555667776 7899999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 008804 433 SLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL 512 (553)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 512 (553)
+.+...+. ..++.+.+.=.+.|.+...+.|+..++++|.+|.++|++++++.+++..+|..+|-.+.+.+.+..
T Consensus 111 Av~~~~fs------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 111 AVFASGFS------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HHHHHHHH------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 88877763 345556666667777777888999999999999999999999999999999998888888888877
Q ss_pred C-chhHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHH
Q 008804 513 G-AENIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIE 548 (553)
Q Consensus 513 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (553)
+ |++.|.+.+++.++.+++..++.+|.+++..++.+
T Consensus 185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~ 221 (493)
T KOG1330|consen 185 FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD 221 (493)
T ss_pred cceEEEEEeehHHHHHHHHHHHhhccCcccccccccc
Confidence 7 99999999999999999888888887765544443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-11 Score=117.95 Aligned_cols=163 Identities=10% Similarity=0.031 Sum_probs=111.0
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
....+.+.++++.+.+. .+.+.......++..++.++.|++.||+|||+.+..+..+.+++.+...... . ....+..
T Consensus 31 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 107 (402)
T TIGR00897 31 LEQGWLSPFLKALGLSP-QQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFG-L-GHANYPL 107 (402)
T ss_pred hHHHhHHHHHHHhCCCH-HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh-c-cCccHHH
Confidence 34556777788888877 8999999999999999999999999999999999998888777755442211 1 1112222
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHH-HHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN-AIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
+....+..+.......+.......+.+|+++|++++|+.++...+|. .++|.+.+.+.+..|+...++....+.++..+
T Consensus 108 l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 187 (402)
T TIGR00897 108 ILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGV 187 (402)
T ss_pred HHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 22222333322222233344567788899999999999999999886 57888888888888865555544433333333
Q ss_pred HHHHhcc
Q 008804 531 FIVRTVP 537 (553)
Q Consensus 531 ~~~~~~~ 537 (553)
+..++.+
T Consensus 188 ~~~~~~~ 194 (402)
T TIGR00897 188 IALFSNK 194 (402)
T ss_pred HHHhccC
Confidence 3333333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=122.81 Aligned_cols=138 Identities=27% Similarity=0.220 Sum_probs=112.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH--HHHHh--cchHHHHHHHHHHHHHHhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA--LTTAY--APGLGVLLVGRLLYGLGIGLA 207 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~ 207 (553)
++.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+.. ++..+ .++.+.+++..++.|++.+..
T Consensus 250 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 329 (394)
T TIGR00883 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY 329 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999998876555444433 22222 356777788889999999999
Q ss_pred hhhhhhHhhhccccccchhHHhHH-HHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHH
Q 008804 208 MHGAPLYIAETCPSQIRGTLISLK-ELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 269 (553)
Q Consensus 208 ~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~ 269 (553)
.+...+++.|.+|+++|+++.++. .....+|..++|.+++.+.+..++|+..++..++.+++
T Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l~ 392 (394)
T TIGR00883 330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALI 392 (394)
T ss_pred hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence 999999999999999999999984 56667899999999999988873498887777665543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-11 Score=120.42 Aligned_cols=163 Identities=16% Similarity=0.073 Sum_probs=117.4
Q ss_pred HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 008804 373 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 452 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (553)
+....|.+. +.|.+. .+.++......++..++.++.|+++||+|||+.+..+.++.+++.+.+...... ......+
T Consensus 46 ~~~~~p~~~-~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 121 (438)
T TIGR00712 46 FALAMPYLV-EQGFSK-GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA--TSSIAIM 121 (438)
T ss_pred HHhhhHHHH-HcCCCH-hHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--cchHHHH
Confidence 445566555 457766 789999999999999999999999999999999888877777776655432100 1122222
Q ss_pred HHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH-hhCchhHHHHHHHHHHHHHHH
Q 008804 453 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-LLGAENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~ 531 (553)
....+..+.......+.....+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..||+..|++.+++.++..++
T Consensus 122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2323333333333344455777899999999999999999999999999988876554 468999999988887776666
Q ss_pred HHHhcccC
Q 008804 532 IVRTVPET 539 (553)
Q Consensus 532 ~~~~~~~~ 539 (553)
.+++.+|.
T Consensus 202 ~~~~~~~~ 209 (438)
T TIGR00712 202 AFAMMRDT 209 (438)
T ss_pred HHHhccCC
Confidence 66655543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=118.43 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=120.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
.|.+..+.|++.+.+.++..++.++.|++.||+|||+.+..+..+.+++.++....+ +...+ .-++.|++.+...+.
T Consensus 235 ~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~ 312 (393)
T PRK09705 235 IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPL 312 (393)
T ss_pred cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHH
Confidence 688999999999999999999999999999999999999998888877776654333 32222 234678888888888
Q ss_pred hhhHhhhccc-cccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCCchh
Q 008804 211 APLYIAETCP-SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPR 282 (553)
Q Consensus 211 ~~~~i~~~~~-~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~ 282 (553)
......+..+ +++|++..++.+....++..++|.+.+++.+..++|...|++.++.+++..++. ++.||++.
T Consensus 313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK09705 313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFP 386 (393)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 7777777775 578999999999999999999999999999987678999999888887766654 55666543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-09 Score=104.09 Aligned_cols=316 Identities=16% Similarity=0.134 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccc
Q 008804 143 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ 222 (553)
Q Consensus 143 ~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 222 (553)
.++-...+.+++++.+.+.|+.|.|+.++++...+..-.+..-+ .|-+-+++.-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 67777888999999999999999999999999999988877765 55677889999999999999999999999999999
Q ss_pred cchhHHhHHHHHHHHHHHHHHHhhhcccCCCC-------chH-HH----------HhhhHHHH---HHHHHHhcccCCch
Q 008804 223 IRGTLISLKELFIVLGILLGYFVGSFQINAVG-------GWR-YM----------YGLSAPLA---LLMGIGMWSLPPSP 281 (553)
Q Consensus 223 ~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~-------~wr-~~----------f~~~~~~~---~~~~i~~~~~~e~p 281 (553)
++.+..++..+....+.++|..+...+..... +-+ .. ..+.+++. .+..+...+.|...
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 99999999999999999998776555432110 111 11 11111111 11112222222211
Q ss_pred hHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHH
Q 008804 282 RWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGL 361 (553)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (553)
. .. +.+.. + . ...+.-....+++++++..........
T Consensus 215 ~-~~---------------~~~~~-~-------------~-------------~~~~~l~~~~~l~~~~~ml~L~~~f~~ 251 (461)
T KOG3098|consen 215 V-VN---------------CKSSS-E-------------T-------------SFSELLKLTFKLLKTPKMLLLFPFFFY 251 (461)
T ss_pred h-hh---------------hhhhc-c-------------c-------------cHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence 0 00 00000 0 0 000000112234444544433333333
Q ss_pred HHHHHhhChhhHHHhHHHHH-H-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc---cCCchhhHhHHHHHHHHHHH
Q 008804 362 VLFQQITGQPSVLYYAGPIL-Q-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD---LGRRPLLIGGVCGIALSLLL 436 (553)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~ 436 (553)
..+.... ....|...+. . ..+.+.....++.....+++.+++....+.+.+| +|+++.+.++..+..+.+++
T Consensus 252 tG~~~Sf---~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~l 328 (461)
T KOG3098|consen 252 TGLETSF---WISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLL 328 (461)
T ss_pred HHHHHHH---HHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHH
Confidence 2222111 1111111111 1 2333443556677777888888888888888765 67888888887777777666
Q ss_pred HHHHHHhhcC------------chHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 008804 437 LSAYYKILGG------------FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 504 (553)
Q Consensus 437 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 504 (553)
.......+.+ .......++.+..|....++....+.++..++| +.|..+.++.-+-..+++.++-+.
T Consensus 329 i~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 329 IHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhh
Confidence 6554332110 113344455556666666777777788888885 788888888887777776665554
Q ss_pred hH
Q 008804 505 FS 506 (553)
Q Consensus 505 ~g 506 (553)
..
T Consensus 408 ~~ 409 (461)
T KOG3098|consen 408 SP 409 (461)
T ss_pred hh
Confidence 43
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=116.12 Aligned_cols=188 Identities=19% Similarity=0.144 Sum_probs=143.6
Q ss_pred eecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhh
Q 008804 344 LEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 423 (553)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 423 (553)
...+|++.++.++++..+..+........ .+-+..+...++ ...+++.....+..++..+++|.++||+.||+++
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va----~~wlv~~lt~S~-~~valv~~a~~LP~~Llsl~aG~laDr~drrril 78 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVA----LAWLVTQLTGSP-LMVALVQAASTLPILLLSLFAGALADRFDRRRIL 78 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 35588999999988887777766543323 233344445554 7888999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHH
Q 008804 424 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 503 (553)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 503 (553)
+.+-++.++..+.+.+.... +....+.+.++.+..+++.....|...+.+.|++|+++...+.++.+...++...+||.
T Consensus 79 i~~~~~~~~~~~~L~~l~~~-~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPa 157 (524)
T PF05977_consen 79 ILSQLLRALVALLLAVLAFF-GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPA 157 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccch
Confidence 99888777766666554433 23344445555566666666677888899999999999999999999999999999999
Q ss_pred HhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcc
Q 008804 504 AFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVP 537 (553)
Q Consensus 504 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 537 (553)
++|.+....|....|.+-++..++..++...+.+
T Consensus 158 lgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 158 LGGILVAFFGAAAAFLINALSFLISILALLRWKP 191 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999888888887766665554444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=116.60 Aligned_cols=149 Identities=14% Similarity=0.061 Sum_probs=114.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---c-chHHHHHHHHHHHHHHhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY---A-PGLGVLLVGRLLYGLGIGLA 207 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~---~-~~~~~l~~~r~l~G~~~g~~ 207 (553)
+|.+......+.....+...++.+++|+++||+|||++++.+.++..++.+.+.. . ++.+.+++..++.|++.+..
T Consensus 281 ~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (438)
T PRK09952 281 LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMV 360 (438)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 6777776666666667778889999999999999999998887766655443322 2 23455556667778888888
Q ss_pred hhhhhhHhhhccccccchhHHhHHHH-HHHHHHHHHHHhhhcccCCC-CchHHHHhhhHHHHHHHHHHhcccCCc
Q 008804 208 MHGAPLYIAETCPSQIRGTLISLKEL-FIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSLPPS 280 (553)
Q Consensus 208 ~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~lG~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~i~~~~~~e~ 280 (553)
.+...+++.|.+|.+.|+.+.++.+. +..+|..++|.+.+++.+.. ++|+..+...++..++..+..+.++|+
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88889999999999999988888554 45589999999999987743 258998888888888877776666654
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=120.47 Aligned_cols=150 Identities=13% Similarity=-0.020 Sum_probs=118.6
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh
Q 008804 384 AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQ 463 (553)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (553)
.+.+. .+.+.+...+.++.+++.++.|++.||+|+|+.+..+.++..++.++..... ......+++.-++.|...
T Consensus 71 ~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~~~G~~~ 145 (465)
T TIGR00894 71 FKWSG-ALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----GGGIALVVFCRVIQGLAQ 145 (465)
T ss_pred CCCCH-HHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHhc
Confidence 45555 6788999999999999999999999999999999988877777665544321 112333444455556666
Q ss_pred cCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh-CchhHHHHHHHHHHHHHHHHHHhccc
Q 008804 464 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL-GAENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 464 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
....+....++.|.+|+++|+++.|+.+....+|.++++.+.+.+.+.. ||+..|++.+++.++..++.+.+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 6677777789999999999999999999999999999999999999884 99999999888777666655555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=112.25 Aligned_cols=161 Identities=21% Similarity=0.182 Sum_probs=114.4
Q ss_pred hhHHHhHHH-HHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchH
Q 008804 371 PSVLYYAGP-ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 449 (553)
Q Consensus 371 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (553)
.....+.|. +.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+.++..++.+.+.... . ..
T Consensus 18 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----~-~~ 91 (366)
T TIGR00886 18 FAFSPLAVQMIKDDLGLST-AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----Q-SY 91 (366)
T ss_pred HHhHHhhhHHHHHHhCCCH-HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh----h-hH
Confidence 356777785 557788877 7899999999999999999999999999999999999888888877665421 0 22
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh----------hCchhHH-
Q 008804 450 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL----------LGAENIF- 518 (553)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~~~~- 518 (553)
..+....++.+...... +....++.+.+|+++|+.+.++......+|..+++.+.+.+... .+|++.|
T Consensus 92 ~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~ 170 (366)
T TIGR00886 92 SVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV 170 (366)
T ss_pred HHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence 22333333334333333 34457889999999999999999988888888888877766653 3678887
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 008804 519 LLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~ 538 (553)
+..+++..+..++.+.+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 171 IVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 44344444444444444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-11 Score=115.15 Aligned_cols=140 Identities=18% Similarity=0.068 Sum_probs=121.1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
.|.+..+.|++.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.++.++.+.+++..++.|++.+...+..
T Consensus 235 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 314 (382)
T PRK11128 235 AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAA 314 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred hhHhhhccccccchhHHhHHH-HHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh
Q 008804 212 PLYIAETCPSQIRGTLISLKE-LFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 274 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~-~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~ 274 (553)
..++.+. ++++++++.++.. ....+|..+||.++|.+.+.. |+ ..|+..+++.++.+++.
T Consensus 315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~-g~-~~~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 315 MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL-GA-GVFWVMALVALPALFIR 375 (382)
T ss_pred HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-HHHHHHHHHHHHHHHHH
Confidence 9988887 5566788888876 556788899999999999887 76 56777776666554433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-11 Score=116.10 Aligned_cols=141 Identities=14% Similarity=0.190 Sum_probs=122.9
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhh
Q 008804 133 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 212 (553)
Q Consensus 133 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 212 (553)
+.+....|++.+...+...++.++.|++.||+|||+.++++.++.+++.++..++++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999888888889999999999999999877777777
Q ss_pred hHhhhccccccchhHHhH-HHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh
Q 008804 213 LYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 274 (553)
Q Consensus 213 ~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~ 274 (553)
.++.+..+++.++...+. .+....+|..+++.++|++.+.. ||+..|.+.+++.++..++.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHHHHHHHHHHHHHHHHHH
Confidence 778888888888877766 67889999999999999999987 89999999888887766544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=115.46 Aligned_cols=155 Identities=14% Similarity=0.064 Sum_probs=114.0
Q ss_pred ChhhHHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhhHhHHHHHHHHHHHHHHHHHhhcC
Q 008804 369 GQPSVLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGG 446 (553)
Q Consensus 369 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (553)
.++.+..+++.|++ +.|.+. .++......+.....+..+++|+++|| +|||+++.++.++..++.+.+.+.. .
T Consensus 29 ~~y~~~~~l~~yl~~~lg~~~-~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~----~ 103 (489)
T PRK10207 29 GYYGVQGILAVFFVKQLGFSQ-EQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL----L 103 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc----c
Confidence 34445556666654 467666 667777777777777778899999999 9999999999999988887776421 1
Q ss_pred chHHHHHHHHHHHHHHhcCcccchhhhhcccCCcc--chhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHH
Q 008804 447 FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR--TRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 524 (553)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 524 (553)
....+.......+.+.....|...+++.|.+|++ +|+.++++.....++|..++|.+.|++.++.||++.|++.++.
T Consensus 104 -~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 104 -KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred -chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 1222222333344544555666678999999877 4577899999999999999999999999999999999886554
Q ss_pred HHHHH
Q 008804 525 AFLAV 529 (553)
Q Consensus 525 ~~~~~ 529 (553)
.+++.
T Consensus 183 ~~~~~ 187 (489)
T PRK10207 183 LIIAL 187 (489)
T ss_pred HHHHH
Confidence 44333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=113.10 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=122.8
Q ss_pred cchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHH
Q 008804 350 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 429 (553)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 429 (553)
++++.+++..++..+... ......+.+..+.+.+. ...++....+.+...+..++.|+++||+|||+++..+.++
T Consensus 3 ~~f~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~-~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~ 77 (393)
T PRK11195 3 KGFYAIMAAQFFSALADN----ALLFAAIALLKELHYPD-WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI 77 (393)
T ss_pred CcHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence 455655555544444332 23344445567777665 6788999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhH
Q 008804 430 IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 509 (553)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 509 (553)
..++.+.+.... .. ....++.+.......|...+++.|.+|+++|+++.|+.+....++..+||.+.|.+.
T Consensus 78 ~~~~~~~~~~~~------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 78 KLLGCLLMLFGI------HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HHHHHHHHHHHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666544321 11 222234455555667788899999999999999999999999999999999999998
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 510 ELLGAENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 510 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
+.. +...+.+.+.+.+++. +..+..||.
T Consensus 149 ~~~-~~~~~~i~~~~~~~~~-~~~~~l~~~ 176 (393)
T PRK11195 149 DPH-AEAALAVCALIYLLAA-LFNLFIPRL 176 (393)
T ss_pred HHH-HHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence 864 5555555444443333 333445543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=118.41 Aligned_cols=149 Identities=19% Similarity=0.141 Sum_probs=111.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--hH-H-HHHHHHHHHHHHhhh-
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GL-G-VLLVGRLLYGLGIGL- 206 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~--~~-~-~l~~~r~l~G~~~g~- 206 (553)
+|.+....++......++..++.++.|+++||+|||++++.+.++.+++.++++... +. + ....+.++.+++.+.
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (479)
T PRK10077 301 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 380 (479)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 677776677777788889999999999999999999999999999998887765432 21 1 222334444444443
Q ss_pred hhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcc------cCCCCchHHHHhhhHHHHHHHHHHh-cccCC
Q 008804 207 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ------INAVGGWRYMYGLSAPLALLMGIGM-WSLPP 279 (553)
Q Consensus 207 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l------~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e 279 (553)
..+....++.|.+|+++|++++++......+|.++++.+.+.+ .+.. +|++.|++.++++++.+++. ++.||
T Consensus 381 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e 459 (479)
T PRK10077 381 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF-HNGFSYWIYGCMGVLAALFMWKFVPE 459 (479)
T ss_pred ccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc-cCccHHHHHHHHHHHHHHHHHhcccc
Confidence 2366789999999999999999999999999998886655433 3455 88999999888877776655 44566
Q ss_pred ch
Q 008804 280 SP 281 (553)
Q Consensus 280 ~p 281 (553)
+.
T Consensus 460 ~~ 461 (479)
T PRK10077 460 TK 461 (479)
T ss_pred CC
Confidence 43
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-11 Score=121.13 Aligned_cols=149 Identities=17% Similarity=0.045 Sum_probs=118.1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-----cc------hHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----AP------GLGVLLVGRLLY 200 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~-----~~------~~~~l~~~r~l~ 200 (553)
+|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++ .+ +...+....++.
T Consensus 314 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (481)
T TIGR00879 314 AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFI 393 (481)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHH
Confidence 6778888899999999999999999999999999999999998888887777662 11 233333333333
Q ss_pred HHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCC
Q 008804 201 GLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPP 279 (553)
Q Consensus 201 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e 279 (553)
+.......+....++.|.+|+++|++++++......+|.++++.+.+.+.+.. +|++.|++.++++++..++. ++.||
T Consensus 394 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~i~~~~~~~~ 472 (481)
T TIGR00879 394 AFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGVFIFFGGLNVLGLIFVYFFLPE 472 (481)
T ss_pred HHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccceehhHHHHHHHHHHHHheeccc
Confidence 33333344666777899999999999999999999999999999999988877 89999999998888877765 44565
Q ss_pred ch
Q 008804 280 SP 281 (553)
Q Consensus 280 ~p 281 (553)
++
T Consensus 473 ~~ 474 (481)
T TIGR00879 473 TK 474 (481)
T ss_pred CC
Confidence 43
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-10 Score=110.25 Aligned_cols=164 Identities=10% Similarity=0.035 Sum_probs=111.8
Q ss_pred HHHhHHHHHH-HcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 373 VLYYAGPILQ-SAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 373 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
+....+.+-+ +.+++. .+.+++.+...+...++++..|++.||+|.|+++.++.++..+..+...+..... .+++..
T Consensus 53 ~~~l~~~~~~~~~~ls~-~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~-~~s~~~ 130 (462)
T PRK15034 53 FSAVTVNLNKIGFNFTT-DQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP-NTPFGI 130 (462)
T ss_pred HHHHHHHhhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc-CCCHHH
Confidence 4444444444 577877 7899999999999999999999999999999999998888877777665421111 123334
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhH-----Hhh-------------C
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-----ELL-------------G 513 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-----~~~-------------g 513 (553)
+.+..++.+..+. ..+.....+.+.+|+++||++.|+....+++|..+++.+.+.+. +.. +
T Consensus 131 lli~r~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~ 209 (462)
T PRK15034 131 FIVIALLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMS 209 (462)
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHH
Confidence 4444444444433 34455678899999999999999997777777776666555433 222 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 514 AENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
++...++...+.++.+++.+++.++.
T Consensus 210 ~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 210 LANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45555666676666666666655543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=110.43 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=119.2
Q ss_pred ccCchhHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---Hhc-chHHHHHHHHHHHHHHhhh
Q 008804 132 FNLSAVQLGLVVS-GSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTT---AYA-PGLGVLLVGRLLYGLGIGL 206 (553)
Q Consensus 132 ~~~s~~~~g~~~s-~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~---~~~-~~~~~l~~~r~l~G~~~g~ 206 (553)
+|.+..+.+++.. ...++..++.++.|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-+++.++.|.
T Consensus 253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~ 332 (491)
T PRK11010 253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGM 332 (491)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 7899999999984 6678999999999999999999998877666655544332 333 4555556666776666666
Q ss_pred hhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCC
Q 008804 207 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 279 (553)
Q Consensus 207 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e 279 (553)
..+...++..+..+++.+++..++.+....+|..+++.+.|.+.+.. ||+..|.+.++++++..++.+++++
T Consensus 333 ~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 333 GTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777888999999999999999999999999999989999998887 8999999999999888777766544
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-10 Score=113.56 Aligned_cols=156 Identities=15% Similarity=0.078 Sum_probs=108.5
Q ss_pred ChhhHHHhHHHHH-HHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhhHhHHHHHHHHHHHHHHHHHhhcC
Q 008804 369 GQPSVLYYAGPIL-QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGG 446 (553)
Q Consensus 369 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (553)
+++.+..+++.++ ++.|.+. .+++..............+++|+++|| +|||+.+..+.++..++..++.+. .
T Consensus 36 ~~y~~~~~l~~yl~~~lg~s~-~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~-----~ 109 (500)
T PRK09584 36 GYYGLQGIMAVYLVKQLGMSE-ADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS-----G 109 (500)
T ss_pred HHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-----c
Confidence 3345666777777 5567766 556666655555555556789999999 599999999988888876666532 1
Q ss_pred chHHHHHHHHHHHHHHhcCcccchhhhhcccCCccc--hhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHH
Q 008804 447 FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAI 524 (553)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 524 (553)
.....+.......+.+.....+...++..|.+|++. +..+.++.++..++|..++|.+.|++.+..||++.|.+.++.
T Consensus 110 ~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~ 189 (500)
T PRK09584 110 HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189 (500)
T ss_pred ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 122222222233334444445566678899988643 456788889999999999999999999999999999987765
Q ss_pred HHHHHH
Q 008804 525 AFLAVL 530 (553)
Q Consensus 525 ~~~~~~ 530 (553)
.+++.+
T Consensus 190 ~~i~~i 195 (500)
T PRK09584 190 MLITVV 195 (500)
T ss_pred HHHHHH
Confidence 555443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-10 Score=108.04 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=119.1
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
.+.+++--++++.+... ..-|...+..-.+.++.-++.+++.+|+|+-+++.+++.+..+=++.+... .++|..
T Consensus 389 lv~tFLfWHled~~~~~-~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-----~n~W~v 462 (618)
T KOG3762|consen 389 LVFTFLFWHLEDLGGIK-TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-----QNPWMV 462 (618)
T ss_pred HHHHHHHHHHhhcCCcc-eeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----cCchhe
Confidence 35555555778877655 667777788888889999999999999999999998888777766666542 455555
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHH-HHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
+.+-++-.......+..+ .+|+....|++.++++.++.... ..+|-.+|++++|.+.+.+|.+..|.++++.+++..+
T Consensus 463 LPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 463 LPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA 541 (618)
T ss_pred eeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence 554444444444444444 48999999999999999998776 6788899999999999999998999988887777665
Q ss_pred HHH
Q 008804 531 FIV 533 (553)
Q Consensus 531 ~~~ 533 (553)
+..
T Consensus 542 ~~~ 544 (618)
T KOG3762|consen 542 LFI 544 (618)
T ss_pred HHH
Confidence 444
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-11 Score=98.31 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhccc
Q 008804 398 VIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEI 477 (553)
Q Consensus 398 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (553)
...++.+++.++.+++.||+|||+.+..+..+..++.+.+... .+.+ ......+..+.......+....+..|.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----SNIT-VLIIARFLQGFGAAFALVAGAALIADI 79 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----ccHH-HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4457788899999999999999999988877777766655431 2222 233333344444344455667889999
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhccc
Q 008804 478 FPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 478 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
+|+++|+++.++.+....++..+++.+.+.+.+..+++..+.+.+.+.++..+..+++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999998898888888888777777666665554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.5e-10 Score=111.13 Aligned_cols=119 Identities=22% Similarity=0.284 Sum_probs=103.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhhhhhhhhhh
Q 008804 135 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-PGLGVLLVGRLLYGLGIGLAMHGAPL 213 (553)
Q Consensus 135 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 213 (553)
+..+.+++.++..++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999999888888777665 46677788889999999999999999
Q ss_pred Hhhhccc-------cccchhHHhHHHHHHHHHHHHHHHhhhcccCCC
Q 008804 214 YIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQINAV 253 (553)
Q Consensus 214 ~i~~~~~-------~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~ 253 (553)
++.|..+ ++++|.+.++.+....+|..+++.+.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998865 456799999999999999999999999887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.2e-10 Score=108.95 Aligned_cols=158 Identities=15% Similarity=0.033 Sum_probs=118.2
Q ss_pred hhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHH
Q 008804 371 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 450 (553)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (553)
.......|.+.++.+.+. .+.++......++..++.+..|++.||+|||+.+..+.++.+++.+++..... ..++.
T Consensus 20 ~~~~~l~~~~~~~~~~s~-~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~---~~~~~ 95 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTA-FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE---IMNYT 95 (410)
T ss_pred HhHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---hccHH
Confidence 345567788888888877 88999999999999999999999999999999999999988888776543221 12233
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH--------------------
Q 008804 451 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-------------------- 510 (553)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-------------------- 510 (553)
.+....+..+.......+....++.+..|++++++..++.+....+|..++|.+.+.+..
T Consensus 96 ~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (410)
T TIGR00885 96 LFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELS 175 (410)
T ss_pred HHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHH
Confidence 333333343443334444445777788898999999999999999999999999887752
Q ss_pred ------hhCchhHHHHHHHHHHHHHHHH
Q 008804 511 ------LLGAENIFLLFAAIAFLAVLFI 532 (553)
Q Consensus 511 ------~~g~~~~~~~~~~~~~~~~~~~ 532 (553)
..+|+.+|++.+++.++..++.
T Consensus 176 ~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 176 AIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357888888877666655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-10 Score=111.61 Aligned_cols=148 Identities=20% Similarity=0.193 Sum_probs=135.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHHHHHHh--------cchHHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRK--RELIIAAVLYALGALTTAY--------APGLGVLLVGRLLYG 201 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk--~~~~~~~~~~~i~~~~~~~--------~~~~~~l~~~r~l~G 201 (553)
+|.+..+...+.-+..+...+|++++|++.||+|.| ++++.+++++.+..+...+ .++-+.+.+.-++.|
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G 391 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG 391 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999 8999988888666665555 678889999999999
Q ss_pred HHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCC
Q 008804 202 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP 279 (553)
Q Consensus 202 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e 279 (553)
+..|..++...++.++..|+++.+..+|++....-....+||++.+.+.+..++-|+.++...++.++.+++.++++.
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999888867999999999888888888777655
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-09 Score=110.68 Aligned_cols=149 Identities=14% Similarity=-0.006 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccc
Q 008804 390 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 469 (553)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (553)
.+.+.+.....++.+++.++.|++.||+|||+.+..+.++..++.++........+......+...-+..|.......+.
T Consensus 56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 135 (502)
T TIGR00887 56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPL 135 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHH
Confidence 45678888999999999999999999999999999888877777665554211000001233444444555555555667
Q ss_pred hhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH-----------------------hhCchhHHHHHHHHHH
Q 008804 470 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-----------------------LLGAENIFLLFAAIAF 526 (553)
Q Consensus 470 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----------------------~~g~~~~~~~~~~~~~ 526 (553)
...++.|.+|++.|+++.++.+....+|..+++.+...+.. ..+|+..+.+.++..+
T Consensus 136 ~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~ 215 (502)
T TIGR00887 136 SAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL 215 (502)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH
Confidence 77999999999999999999999999999888888765532 1368878765544444
Q ss_pred HHHHHHHHhcccC
Q 008804 527 LAVLFIVRTVPET 539 (553)
Q Consensus 527 ~~~~~~~~~~~~~ 539 (553)
+ .++..+++||.
T Consensus 216 i-~~~~~~~lpES 227 (502)
T TIGR00887 216 L-ALYFRLTIPET 227 (502)
T ss_pred H-HHHHHHhCCCC
Confidence 3 33344567775
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=107.28 Aligned_cols=178 Identities=21% Similarity=0.185 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 008804 95 LPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAA 174 (553)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~ 174 (553)
+...+++...+.+|.+........-. ..+ +|++..++.++.-...+..+++++++|+|.||+|.|+++..++
T Consensus 254 i~~FLiA~~~~~DGv~til~~~~~fg-~~~-------~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~l 325 (438)
T COG2270 254 LVLFLIARFFYIDGVNTILAMGGVFG-AAD-------LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGL 325 (438)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH-HHH-------cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHH
Confidence 33444555556777665443332222 223 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCC
Q 008804 175 VLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG 254 (553)
Q Consensus 175 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~ 254 (553)
+++.+.++..-+...-..+.++-.+.|...|..+..+.++..+.+|+++-++.+|++......+..+||.+.+.+.+..+
T Consensus 326 vi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 326 VILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 99999999888877777778888999999999999999999999999999999999999999999999999999888877
Q ss_pred chHHHHhhhHHHHHHHHHHhcccCCc
Q 008804 255 GWRYMYGLSAPLALLMGIGMWSLPPS 280 (553)
Q Consensus 255 ~wr~~f~~~~~~~~~~~i~~~~~~e~ 280 (553)
+-|.-+....++.++.+++.+.+|+.
T Consensus 406 ~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 406 SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 88888888888888888888777664
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.5e-10 Score=109.58 Aligned_cols=142 Identities=18% Similarity=0.056 Sum_probs=112.9
Q ss_pred ccCchhHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHh
Q 008804 132 FNLSAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY------APGLGVLLVGRLLYGLGI 204 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~------~~~~~~l~~~r~l~G~~~ 204 (553)
.|.+..++|++...... ...++.++.|++.||+|+|+.+..+..+.++..+.... .++.+.++....+.+++.
T Consensus 238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (390)
T TIGR02718 238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT 317 (390)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH
Confidence 78999999999988764 66778899999999999999998877766443333221 233444555566777778
Q ss_pred hhhhhhhhhHhhhcccc-ccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh
Q 008804 205 GLAMHGAPLYIAETCPS-QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM 274 (553)
Q Consensus 205 g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~ 274 (553)
+...+...+.+.+..++ +++++.+++.+....+|..+||.++|.+.+.. ||+..|++.+++.++..+..
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAGGFLSGTVLAVLAILLA 387 (390)
T ss_pred HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHh
Confidence 88888888888888776 78999999999999999999999999998877 89999999888777765543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.3e-10 Score=102.64 Aligned_cols=161 Identities=13% Similarity=0.037 Sum_probs=125.9
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
.+....+.+-++.+++. .|.+++.+...+.+.+.++..|.+.||+|.|++...+.++..+-++.+.+... ....+.
T Consensus 32 l~s~l~~~i~~~~~LS~-~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~---~~~~~~ 107 (417)
T COG2223 32 LFSPLGVFIKSDFGLSE-GQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT---YPSTWQ 107 (417)
T ss_pred HHHHHHhhhccccCCCH-HHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc---CCchHH
Confidence 34444555557788887 89999999999999999999999999999999999998888887777776543 222233
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC---chhHHHHHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG---AENIFLLFAAIAFLA 528 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~~~~~~~~ 528 (553)
+..+.++.|..+.. ......++++.+|++++|.++|++. .+++|..+...+...+....| |+....+.....++.
T Consensus 108 ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 108 LLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIA 185 (417)
T ss_pred HHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333444443333 3455588999999999999999999 999999999999999999999 888888888888887
Q ss_pred HHHHHHhccc
Q 008804 529 VLFIVRTVPE 538 (553)
Q Consensus 529 ~~~~~~~~~~ 538 (553)
+++.++...+
T Consensus 186 ~v~~~~~~~d 195 (417)
T COG2223 186 AVLAWLGMND 195 (417)
T ss_pred HHHHHHHhCC
Confidence 7777776544
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-10 Score=111.32 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=137.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG--RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G--rk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 209 (553)
.+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.+++.++++.++..-.+.|++.|....
T Consensus 328 ~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~ 407 (509)
T KOG2504|consen 328 LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSS 407 (509)
T ss_pred cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999988 66777889999999999999999999999999999999999988
Q ss_pred hhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccC
Q 008804 210 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLP 278 (553)
Q Consensus 210 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~ 278 (553)
....++.|+.+.++-..+.|+.....+++.++||++++.+.+..++|...|+..++..++..++++..+
T Consensus 408 l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 408 LTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 888899999999999999999999999999999999999998886799999999999999888877765
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=112.28 Aligned_cols=136 Identities=22% Similarity=0.170 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHhhhhhhhhhhHhhhccc
Q 008804 143 VSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGL--GVLLVGRLLYGLGIGLAMHGAPLYIAETCP 220 (553)
Q Consensus 143 ~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 220 (553)
.....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+..++....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334556777889999999999999999999999999988888776644 555666677778888888889999999999
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCch
Q 008804 221 SQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 281 (553)
Q Consensus 221 ~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p 281 (553)
++.|++++|+.+....+|.+++|.+.+ +. .. ++...+++.++..++..++.+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LG-EK-WLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HH-HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999988 33 33 677888888888888888788888865
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-09 Score=105.95 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=108.1
Q ss_pred HHHHHHhhChhhHHHhHHHHHHHcC---CCCchh---hHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHH
Q 008804 361 LVLFQQITGQPSVLYYAGPILQSAG---FSAAAD---ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 434 (553)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 434 (553)
+.++........+....|.+.++.+ .+. .+ .+.......++..++.++.|+++||+|||+.+..+.++.+++.
T Consensus 29 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ 107 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCSLYFAHIFFPSGNTT-TQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGS 107 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 3333333344456666666666654 222 22 2334445556666999999999999999999999998888887
Q ss_pred HHHHHHHHhhc--CchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhH---
Q 008804 435 LLLSAYYKILG--GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK--- 509 (553)
Q Consensus 435 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~--- 509 (553)
+...+...... ......+...-+..|....+..+...+++.|.+|+++|+...++.......|..+++.+...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 187 (432)
T PRK10406 108 LVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTL 187 (432)
T ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77654210000 0011223333344555555566777799999999999999999887777777777766554443
Q ss_pred -----HhhCchhHHHHHHHHHHHH
Q 008804 510 -----ELLGAENIFLLFAAIAFLA 528 (553)
Q Consensus 510 -----~~~g~~~~~~~~~~~~~~~ 528 (553)
...||+..|++.++..++.
T Consensus 188 ~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 188 EDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred CHHHHhccchHHHHHHHHHHHHHH
Confidence 2578999998766655543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=122.03 Aligned_cols=191 Identities=14% Similarity=0.008 Sum_probs=122.4
Q ss_pred ecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhh
Q 008804 345 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 423 (553)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 423 (553)
.+++++.++++++..++..+........+..+..+.+.. .+.+.....++..+...+..++..+++|+++||++||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 467777788777666665554332222222222222221 2222223466777788888999999999999999999976
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHH
Q 008804 424 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 503 (553)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 503 (553)
.....+..+...+...... ...++.+++..++.+.....+.|...+++.+.+|++.++.++|+.++...+|.++||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~---~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~ 162 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFH---LNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTI 162 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHH
Confidence 4422222221111111111 1234445555556666666677888899999999999999999999999999999999
Q ss_pred HhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 504 AFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 504 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
+.|.+.+..||...|+...++.+++ ++..++.++.
T Consensus 163 l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 197 (1140)
T PRK06814 163 IGGLATISGNFVILVALLMGIAVLG-WLASLFIPKT 197 (1140)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCC
Confidence 9999999989888774443333333 3344444443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=109.68 Aligned_cols=180 Identities=17% Similarity=0.099 Sum_probs=120.0
Q ss_pred cccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHH
Q 008804 348 QGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 427 (553)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 427 (553)
+++++...+..+++..............-++.+..+.|.++ ...++.....+...+..++.|+++|.+|||+.++.+.
T Consensus 38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~--~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~ 115 (599)
T PF06609_consen 38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSD--NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGS 115 (599)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCc--cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHH
Confidence 44545544444444444333333333344566777777664 6777888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHH
Q 008804 428 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSP 507 (553)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 507 (553)
++..++.++... ..+.-.++....+.+.. .+........++|..|.+.|..+.++..........+++.+...
T Consensus 116 ~l~vvG~Iv~at------A~~~~~~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~ 188 (599)
T PF06609_consen 116 LLGVVGSIVCAT------AQNMNTFIAGMVLYGVG-AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQL 188 (599)
T ss_pred HHHHhHHHHhhc------CCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHH
Confidence 999998887764 22332333333333332 23333445668999999999888777665555555566666666
Q ss_pred hHHhhCchhHHHHHHHHHHHHHHHHHHhc
Q 008804 508 LKELLGAENIFLLFAAIAFLAVLFIVRTV 536 (553)
Q Consensus 508 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 536 (553)
+..+.+|++.|++.+++..++.+..++++
T Consensus 189 ~~~~~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 189 FAAHSGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred hccCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 66667899999998887777666554443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-09 Score=100.58 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=108.4
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
+|.++.+.++..+.+..+..++.++.+++.||+|+|+++.++..+..++.++....++...+ .+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999998888888887776665554333 45568999999999999
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHH
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 266 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~ 266 (553)
.+...+..|++ .+.+.++. ....+|.+++|++.|.+.+.. |.+..|++..+.
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~-g~~~a~~v~~~~ 303 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL-GIQLAFALPVPC 303 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc-cchHHHHHHHHH
Confidence 99999988754 56667775 566789999999999988877 788888754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-10 Score=114.17 Aligned_cols=179 Identities=14% Similarity=0.007 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHH
Q 008804 355 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSL 434 (553)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 434 (553)
+++...+..+.+......+..-++.+-++.+.++ .+.|++...+.++.+++.++.+++.||.+||+++.++.++.+++.
T Consensus 34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss-~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ 112 (633)
T TIGR00805 34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLST-SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS 112 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCC-CcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence 3344444444444433455556677777788887 789999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhc---------------------------------------------CchHHHHHHHHHHHHHHhcCcccc
Q 008804 435 LLLSAYYKILG---------------------------------------------GFPLVAVSALLLYVGCYQISFGPI 469 (553)
Q Consensus 435 ~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 469 (553)
+++++...... ...+..+++.-++.|.+.....+.
T Consensus 113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~ 192 (633)
T TIGR00805 113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL 192 (633)
T ss_pred HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence 88765321100 002334444555666666666677
Q ss_pred hhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh---------------------C-chhHHHHHHHHHHH
Q 008804 470 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL---------------------G-AENIFLLFAAIAFL 527 (553)
Q Consensus 470 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---------------------g-~~~~~~~~~~~~~~ 527 (553)
..+++.|.+|++.|+...|+.+....+|..+|+.+.+.+.+.+ | |+..|++.+++.++
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999887643 1 45567777776666
Q ss_pred HHHHHHH
Q 008804 528 AVLFIVR 534 (553)
Q Consensus 528 ~~~~~~~ 534 (553)
.++..++
T Consensus 273 ~~v~l~~ 279 (633)
T TIGR00805 273 TSIPFFF 279 (633)
T ss_pred HHHHHHh
Confidence 5554433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=103.81 Aligned_cols=161 Identities=17% Similarity=0.071 Sum_probs=112.2
Q ss_pred HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc-----CCchhh-HhHHHHHHHHHHHHHHHHHhhcC
Q 008804 373 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-----GRRPLL-IGGVCGIALSLLLLSAYYKILGG 446 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 446 (553)
+..-.|.+.++.|.+. .+.+..... .+...+ .++.|.+.||+ ||||.+ ..+.++.+++...+.+. .+.
T Consensus 7 ~~~~~~~~~~~~g~s~-~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---~~~ 80 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSL-KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---VPS 80 (356)
T ss_pred HHhHHHHHHHHcCCCH-HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---Ccc
Confidence 4556778889999888 677777544 344444 88999999997 888874 45555555554444331 111
Q ss_pred chHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC--------chhHH
Q 008804 447 FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--------AENIF 518 (553)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--------~~~~~ 518 (553)
.....+....+..+.......+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..| |+..|
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f 160 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF 160 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence 2222233333333344444455666889999999999999999999999999999999999988888 99999
Q ss_pred HHHHHHHHHHHHHHHHhcccC
Q 008804 519 LLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~ 539 (553)
++.+++.++..++.++..+|.
T Consensus 161 ~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 161 FWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 888887777665545445654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-09 Score=105.35 Aligned_cols=164 Identities=17% Similarity=0.009 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHH-----HHHHHHHHHHHHHhhcccCCchhhHhHHHH
Q 008804 355 FIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVI-----GVFKLVMTWIAVAKVDDLGRRPLLIGGVCG 429 (553)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 429 (553)
.....++..+........+....|.+.++.+.+......+..... .+...++.++.|++.||+|||+.+..+..+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 344444555555555566888889888888776633333322221 222346788999999999999999999888
Q ss_pred HHHHHHHHHHHHHhhcCchH------HHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHH
Q 008804 430 IALSLLLLSAYYKILGGFPL------VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 503 (553)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 503 (553)
..++.++..+.. +... ..+.+.-+..+.......+....++.|.+|+++|++++++.....++|..+++.
T Consensus 96 ~~~~~~l~~~~~----~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 96 MASGTLLIAFVP----GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 888777766421 1110 012222233343333344555688999999999999999999888888777777
Q ss_pred HhHHh--------HHhhCchhHHHHHH
Q 008804 504 AFSPL--------KELLGAENIFLLFA 522 (553)
Q Consensus 504 ~~g~l--------~~~~g~~~~~~~~~ 522 (553)
+.+.+ .+..||+..|++..
T Consensus 172 ~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 172 LGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 76655 24678988888643
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=105.36 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=125.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccc
Q 008804 390 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 469 (553)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (553)
.+.|+++....+.+++..++.|.+.||+|+|..+++|++++..+.+++.+ .+.+..+++.=...+....+....
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf------g~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF------GNSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH------cchhHHHHHHHHHhhhhHHHHHhh
Confidence 68999999999999999999999999999999999999999999988886 344445555555666666566666
Q ss_pred hhhhhcccCCccc-hhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008804 470 SWLMVSEIFPLRT-RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 542 (553)
Q Consensus 470 ~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (553)
..+++++.+|.+. |++++|+.-.+..+|-.+||+++|.+++..|+..+|++++.++++...+-++.++.++..
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 6789999999776 699999999999999999999999999999999999999999999888777766554433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-09 Score=103.45 Aligned_cols=172 Identities=19% Similarity=0.147 Sum_probs=124.3
Q ss_pred HHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc-----CCch-hhHhHHHHHHHHH
Q 008804 361 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-----GRRP-LLIGGVCGIALSL 434 (553)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~ 434 (553)
..++.+...+.....-+|.++++.|.+. .+.+++...... .+..++.|+++||+ |||| ++..+.++.+++.
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~-~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDI-QTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 4455555566677888899999999988 788887655554 68889999999999 7775 5766676666666
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh-hC
Q 008804 435 LLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LG 513 (553)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g 513 (553)
..+.+.. .....+.+....++.+++.....+...+++.|..|+++|+++.++......+|..+++.+.+.+.+. .|
T Consensus 83 ~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g 159 (402)
T PRK11902 83 AAMAFCP---PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG 159 (402)
T ss_pred HHHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 6554321 1222333333333334444455567778999999999999999999998999999999999988885 48
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 514 AENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
|+..|++.+++.++..+. .++.+|+
T Consensus 160 w~~~f~i~a~~~l~~~l~-~~~~~e~ 184 (402)
T PRK11902 160 WGNTYLLMAGLMLAGALT-TLWAPEP 184 (402)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 999999888877665543 3445554
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-09 Score=104.39 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=109.2
Q ss_pred hhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHH
Q 008804 371 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 450 (553)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (553)
+.+..+.+.+.++.|++. .+.+.+...... .....++.|++.||+|+|+++.++.++..++.++.++.....-..+.+
T Consensus 44 y~fsv~s~~L~~~lgls~-~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~ 121 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQ-RDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV 121 (591)
T ss_pred HHHHHHHHHHHHHhCcCH-HHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH
Confidence 456677888888888887 666666655333 334566789999999999999999999999888777632100012233
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHH
Q 008804 451 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 530 (553)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 530 (553)
.+.+..+..+.......+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...|++.+++.++..+
T Consensus 122 ~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 122 RLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334456677887 789999999999999999875555554444 3466777777777777666
Q ss_pred HHHHhccc
Q 008804 531 FIVRTVPE 538 (553)
Q Consensus 531 ~~~~~~~~ 538 (553)
+.+.+.+.
T Consensus 200 l~~~~vr~ 207 (591)
T PTZ00207 200 LAIVFMRL 207 (591)
T ss_pred HHHhheeC
Confidence 66665543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=102.20 Aligned_cols=146 Identities=18% Similarity=0.241 Sum_probs=126.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhh
Q 008804 133 NLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAP 212 (553)
Q Consensus 133 ~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 212 (553)
+.++...|.+.+...+.-++...+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhccccccchhHHhH-HHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCC
Q 008804 213 LYIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPP 279 (553)
Q Consensus 213 ~~i~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e 279 (553)
.|+++.+|++..++...+ .+...++|..+.+.++|.+.++. |.+..|++.+.+.++..++. +.+++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-GFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-CcHHHHHHHHHHHHHHHHHheeeecC
Confidence 999999998887777766 46888999999999999999988 99999999888877766655 44443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.2e-09 Score=102.47 Aligned_cols=136 Identities=13% Similarity=-0.043 Sum_probs=101.3
Q ss_pred hhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchH
Q 008804 370 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 449 (553)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (553)
......+.|.+.++.+.+. .+.++....+.++..++.++.|++.||+|||+.+..+..+..++.+++..... ..++
T Consensus 42 ~~~~~~~~p~i~~~~~~s~-~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~---a~~~ 117 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMNY 117 (438)
T ss_pred HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh---cCCH
Confidence 3457778888888888877 89999999999999999999999999999999999999988888866532111 2233
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhH
Q 008804 450 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 509 (553)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 509 (553)
..+....+..+.......+..+.++.+..|++.+...+++.+....+|..+++.+.+.+.
T Consensus 118 ~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 118 TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444333444455567778767666666789999999999999998876554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=98.33 Aligned_cols=138 Identities=11% Similarity=0.012 Sum_probs=112.4
Q ss_pred hHHHhHHHHHHHcCCCCchh-hHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHH
Q 008804 372 SVLYYAGPILQSAGFSAAAD-ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 450 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (553)
...+..|++.++.|++. .+ .+.+...+..+..+..+.+|+++||+|.|+.+.++.+...+..+++++. ....
T Consensus 44 n~s~a~p~L~~elglT~-~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa------~Sl~ 116 (511)
T TIGR00806 44 GESFITPYLLTVLNFTE-ETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG------TSVW 116 (511)
T ss_pred hHHHHHHHHHHHcCCCH-HHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 35566777778889988 66 9999999999999999999999999999999999988888888887763 2344
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHH
Q 008804 451 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIF 518 (553)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 518 (553)
.+.+.-++.|.+..... ....++...+|+++|+++.|+.+....+|.++++++.+. ...+||+...
T Consensus 117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~ 182 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS 182 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence 44555555555555555 666889999999999999999999999999999999999 5567876543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.6e-09 Score=116.55 Aligned_cols=161 Identities=13% Similarity=0.026 Sum_probs=110.2
Q ss_pred ecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCC-chhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhh
Q 008804 345 EVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSA-AADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLL 423 (553)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 423 (553)
..++++.++.+++..++..+.... ......+.+..+.+.+. ....++..+.+.++.+++.+++|+++||+|||+++
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l 80 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLG---HKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI 80 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHH---HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH
Confidence 456666677666555444433322 12222233333344332 13357777888889999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHH
Q 008804 424 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 503 (553)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 503 (553)
.++.++..+..++..+... ...+..+++..++.+.......+...+++.|.+|+++|+.++|+......+|.++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~ 157 (1146)
T PRK08633 81 RIVKLFEVGLTLLIVLAYY---LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA 157 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence 8887665555544433221 1223444444455555556666777789999999999999999999999999999999
Q ss_pred HhHHhHHh
Q 008804 504 AFSPLKEL 511 (553)
Q Consensus 504 ~~g~l~~~ 511 (553)
+.+.+.+.
T Consensus 158 l~~~l~~~ 165 (1146)
T PRK08633 158 LFSFLFES 165 (1146)
T ss_pred HHHHHHHh
Confidence 99998876
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=99.06 E-value=8e-07 Score=87.31 Aligned_cols=116 Identities=5% Similarity=-0.073 Sum_probs=91.6
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc----c---------------------
Q 008804 135 SAVQLGLVVSGSLYGALLG-SILVYSIADFLGRKRELIIAAVLYALGALTTAYA----P--------------------- 188 (553)
Q Consensus 135 s~~~~g~~~s~~~~~~~i~-~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~----~--------------------- 188 (553)
+...+.++-+...+..++. .++.+++++|++|++++-+....+.+..+++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4468899999888877777 9999999999999999988777776666665553 1
Q ss_pred ------hHHHHHHHHHHHHHHhhhhhh-hhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhccc
Q 008804 189 ------GLGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI 250 (553)
Q Consensus 189 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~ 250 (553)
+.|...+..+...+-...... .-..+..|.++.+|-.|..+++..+.++|.++++.+..++.
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133444555555665555555 67789999999999999999999999999999999888866
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-07 Score=91.04 Aligned_cols=338 Identities=12% Similarity=0.007 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------c--c----hHHHH---HHHHHHHHHHhh
Q 008804 141 LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY------A--P----GLGVL---LVGRLLYGLGIG 205 (553)
Q Consensus 141 ~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~------~--~----~~~~l---~~~r~l~G~~~g 205 (553)
...-.-.+...+.++..|.+.||..|.+++..+++..-++..+.+. . . +-+.. ++.-.+.|.-.-
T Consensus 42 iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 121 (432)
T PF06963_consen 42 IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIER 121 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHH
Confidence 3333445667788889999999999999987776664333322221 1 1 11222 222222222111
Q ss_pred hh-hhhhhhHhhhcc------ccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcc-c
Q 008804 206 LA-MHGAPLYIAETC------PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS-L 277 (553)
Q Consensus 206 ~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~-~ 277 (553)
.. .....++=.||. +++.+.+.++...-.--+..+++|++.|.+.+.. +.+...++.++..++..+.=++ +
T Consensus 122 Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~-s~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 122 LASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA-SPVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred HHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111222223443 3455677777777778889999999999988877 8888888777777775543322 1
Q ss_pred ----CCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchh
Q 008804 278 ----PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLK 353 (553)
Q Consensus 278 ----~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (553)
...|.- ..++.+.+.+.. +.++ ...++...........+ .-......|+.-++++.+.
T Consensus 201 ~~VY~~~P~L-~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~------~~~~~~~~w~~Y~~q~vfl 262 (432)
T PF06963_consen 201 ARVYNSVPAL-AVKKRSSESESS-SDEE----------SSSESSSDPSILKRLWN------PLRTIIRGWRTYFRQPVFL 262 (432)
T ss_pred HHHHHhChHh-cCCCCCcccccc-cccc----------ccccccchhhHHHHHHH------HHHHHhccHHHHHhCHHHH
Confidence 122221 000000000000 0000 00000000000000000 0111234566667766555
Q ss_pred HHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHH
Q 008804 354 AFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 433 (553)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 433 (553)
..+. ..+.++.... +...+..|+...|+++ ...+.+-....+.++.++++..++.+|+|..+.-.++.....++
T Consensus 263 as~a-lalLY~TVLs----f~~lmt~yl~~~G~s~-~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~ 336 (432)
T PF06963_consen 263 ASFA-LALLYFTVLS----FGGLMTAYLKSQGYSP-SVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVC 336 (432)
T ss_pred HHHH-HHHHHHHHhc----CcHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 4333 3333333332 3445556677778888 78899999999999999999999999999988877776655544
Q ss_pred HHHHHHHHHhhcCc-hHH---HHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHH
Q 008804 434 LLLLSAYYKILGGF-PLV---AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTF 503 (553)
Q Consensus 434 ~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~ 503 (553)
..+........... +.. .++..+...=.+--++--....+++|..|+++||...|+-+...++...+--.
T Consensus 337 L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 337 LALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44333322222221 111 11111111111112222334567899999999999999999888887655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.5e-08 Score=85.67 Aligned_cols=147 Identities=20% Similarity=0.144 Sum_probs=117.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHHHh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-------PGLGVLLVGRLLYGLGI 204 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~-------~~~~~l~~~r~l~G~~~ 204 (553)
+|.|.+|...+.++..+|..+ .++.|.+.|++|++.++.+|.+...+|..+...+ .++|.+.+..++.|.+.
T Consensus 32 l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~ 110 (250)
T PF06813_consen 32 LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSS 110 (250)
T ss_pred hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccH
Confidence 999999999999999999987 5889999999999999999999999999887652 46888888888988888
Q ss_pred hhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCch
Q 008804 205 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 281 (553)
Q Consensus 205 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p 281 (553)
+....++.....+.|| ++||++.|+.-...+++..+-..+...+.... .-+..+.+...+.++.++..+++++.|
T Consensus 111 ~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~-~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 111 CWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD-PSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 7777777777778887 57999999999999999888777766655553 455555555555555555555554433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=98.76 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=106.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccc
Q 008804 390 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 469 (553)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (553)
..+|++...+.++.++.++..|.++||+|||.++.+|.+..++...+.+. ..++..++..=+..|.+.... .+
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~------S~~F~afv~aR~l~Gi~kgnl-~v 140 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL------SRNFAAFVLARFLGGIFKGNL-SV 140 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhccCch-HH
Confidence 57889999999999999999999999999999999999888887766664 334434444345555555444 45
Q ss_pred hhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH---hhCchhHHH---HHHHHHHHHHHHHHHhcccC
Q 008804 470 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE---LLGAENIFL---LFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 470 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~ 539 (553)
..++++|++++++|+.+++..+....+|.++||.++|++.. ..|....++ +..++.+....+..+++|||
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 56999999999999999999999999999999999999987 344322222 22222222234455667776
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=100.03 Aligned_cols=118 Identities=23% Similarity=0.350 Sum_probs=90.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhHHHH-HHHHHHHHHHHHHHhcchHH---------------
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD----FLGRKRELI-IAAVLYALGALTTAYAPGLG--------------- 191 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d----r~Grk~~~~-~~~~~~~i~~~~~~~~~~~~--------------- 191 (553)
+|+.....+.+--..-+...+.+|+.|..+| ||||||.++ .+.+...++.++..++.++.
T Consensus 62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra 141 (498)
T KOG0637|consen 62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA 141 (498)
T ss_pred cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence 6666666777777778888899999999999 589876655 55666667777777765443
Q ss_pred --HHHHHHHHHHHHhhhhhhhhhhHhhhccccccchh-HHhHHHHHHHHHHHHHHHhhhcc
Q 008804 192 --VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT-LISLKELFIVLGILLGYFVGSFQ 249 (553)
Q Consensus 192 --~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~lG~~~g~~l~~~l 249 (553)
.++++.-+.=+..-.....+.+++.|....+++.+ +++++..+..+|..+|..+++++
T Consensus 142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 34444445555666778889999999997766666 99999999999999999998853
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=102.10 Aligned_cols=121 Identities=25% Similarity=0.272 Sum_probs=100.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 209 (553)
+|.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++..++.|+|.+...+
T Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~ 338 (448)
T PRK09848 259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMT 338 (448)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 566665555555555778889999999999999999999999999888888777654 677777888899999999999
Q ss_pred hhhhHhhhccccc-------cchhHHhHHHHHHHHHHHHHHHhhhcccCC
Q 008804 210 GAPLYIAETCPSQ-------IRGTLISLKELFIVLGILLGYFVGSFQINA 252 (553)
Q Consensus 210 ~~~~~i~~~~~~~-------~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~ 252 (553)
...+++.|..|.+ ++|...++.+....+|..+|+.+.+.+++.
T Consensus 339 ~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 339 VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988754 459999999999999999999988876543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=99.66 Aligned_cols=148 Identities=19% Similarity=0.128 Sum_probs=106.9
Q ss_pred hhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHH
Q 008804 371 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 450 (553)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (553)
......+|.+.++.+.+. .+.++......++..++.++.|++.||+|||+.+..+.++..++.+.. . ..+.+.
T Consensus 17 ~~~~~~lp~l~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~-----~~~~~~ 89 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSF-SVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S-----APGTAL 89 (355)
T ss_pred ccCcccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H-----hccHHH
Confidence 345667888889988887 889999999999999999999999999999999988877666655443 1 122332
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC--chhHHHHHHHHHHH
Q 008804 451 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFL 527 (553)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~ 527 (553)
. ....+..+.......+.....+.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+ |+..|.+.+++.++
T Consensus 90 l-~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 90 L-FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred H-HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 2 222333333222223334456677776 689999999999999999999999998887653 66677666554443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=99.29 Aligned_cols=169 Identities=16% Similarity=0.113 Sum_probs=116.1
Q ss_pred hhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc----ccCCchhhHhH-HHHHHHHHHHHHHHHHhh
Q 008804 370 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVD----DLGRRPLLIGG-VCGIALSLLLLSAYYKIL 444 (553)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 444 (553)
+.....+++.|+++.|.+. ...+.+.....+..++..++.|+++| |+|||+.++.. .+...+++.++.......
T Consensus 20 ~~l~~~~l~~yl~~lg~~~-~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPH-AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 4456667777888899876 88999999999999999999999999 59999998775 444444444444321100
Q ss_pred --------cCc-h---HHHHHHHHHHHHHHhcCcccchhhhhcccCCccch--hhHHHHHHHHHHHHHHHHHHHhHHh--
Q 008804 445 --------GGF-P---LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR--GRGISLAVLTNFGSNAIVTFAFSPL-- 508 (553)
Q Consensus 445 --------~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~~~~~~g~l-- 508 (553)
... . +..++...+..........|. .+++.|..|+++| +.+.++.+....+|+.+++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 000 1 111222222222333333344 5889999998865 5799999999999999999988764
Q ss_pred HHhh-------------CchhHHHHHHHHHHHHHHHHHHhcccCC
Q 008804 509 KELL-------------GAENIFLLFAAIAFLAVLFIVRTVPETK 540 (553)
Q Consensus 509 ~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (553)
.+.. +.+..|++.+++.+++.++..+..+|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 2222 4566788888888888888888777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-08 Score=93.77 Aligned_cols=133 Identities=18% Similarity=0.076 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhcc
Q 008804 140 GLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC 219 (553)
Q Consensus 140 g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 219 (553)
+.+.-+-.+...+..+.+.+..+|+..+.=+....++..++.++.+++++.+.=+++-++.+++.|........+ +..+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence 444445556667777778888999886666666777888899999999999999999999999999998888887 4456
Q ss_pred ccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhccc
Q 008804 220 PSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 277 (553)
Q Consensus 220 ~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~ 277 (553)
++ ..++-+.++.+.+.++|+..-..+.....+-|..+++..++.++..+.++++
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 3578888888888888888766655521144778888777776666655443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=97.99 Aligned_cols=148 Identities=24% Similarity=0.335 Sum_probs=121.2
Q ss_pred cc-CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chHHHHHHH----HHHHHHHhh
Q 008804 132 FN-LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-PGLGVLLVG----RLLYGLGIG 205 (553)
Q Consensus 132 ~~-~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~----r~l~G~~~g 205 (553)
.| .+....+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+. ..++|+..+
T Consensus 237 ~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~ 316 (400)
T PF03825_consen 237 LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFG 316 (400)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHH
Confidence 55 567778888888889999999999999999999999999999999988888887 555544333 456999999
Q ss_pred hhhhhhhhHhhhccccccchhHHhHHHHH-HHHHHHHHHHhhhcccCCCC-----chHHHHhhhHHHHHHHHHHh-cccC
Q 008804 206 LAMHGAPLYIAETCPSQIRGTLISLKELF-IVLGILLGYFVGSFQINAVG-----GWRYMYGLSAPLALLMGIGM-WSLP 278 (553)
Q Consensus 206 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~lG~~~g~~l~~~l~~~~~-----~wr~~f~~~~~~~~~~~i~~-~~~~ 278 (553)
....+...++.+.+|++.|+++.+++.+. .++|..+|..++|++.+..+ .|...+.+.+++.++..+++ ++++
T Consensus 317 ~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 317 LFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999998764 68999999999999988762 35556667777666665544 4444
Q ss_pred C
Q 008804 279 P 279 (553)
Q Consensus 279 e 279 (553)
|
T Consensus 397 ~ 397 (400)
T PF03825_consen 397 P 397 (400)
T ss_pred C
Confidence 4
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.3e-09 Score=98.70 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=110.4
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhc
Q 008804 386 FSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQI 464 (553)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (553)
++. .++......+....-+..+++||++|| +|+|+.+..+.+++.++.+++.... ......+.+.+.+..++.+
T Consensus 58 ~~~-~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~----~~~~~gl~i~L~~I~iG~G 132 (498)
T COG3104 58 FDE-THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS----VSGPGGLYIGLALIIVGTG 132 (498)
T ss_pred cCh-HhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----cccccHHHHHHHHHHhccc
Confidence 776 556555555555556678899999999 5999999999999999999887521 0112222223333334455
Q ss_pred CcccchhhhhcccCCccc--hhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcc
Q 008804 465 SFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVP 537 (553)
Q Consensus 465 ~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 537 (553)
.+-+....++.|.+|+++ |-.++++..+..++|+.++|.+.+++.+++||...|...++-+.++.+..++..+
T Consensus 133 l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 133 LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 566777788999998543 6778888888899999999999999999999999999998888888776665443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-09 Score=95.89 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchh
Q 008804 147 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGT 226 (553)
Q Consensus 147 ~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 226 (553)
.+.-..|.++.+++.||+|||+.+..+++++++..++...+.+-..+.+.-|..-++.++.+.+.+.|..|.+|.+-|+.
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 45667889999999999999999999999999999988776543333333333333445567788999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCch
Q 008804 227 LISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSP 281 (553)
Q Consensus 227 ~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p 281 (553)
..|.-.....+|.++.|+++ ...+. +-..+..+.+.++++..++..++|-.+
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeecc
Confidence 99999999999999999999 32222 445667777888888888888877544
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.4e-09 Score=101.71 Aligned_cols=149 Identities=16% Similarity=0.061 Sum_probs=125.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhc
Q 008804 385 GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQI 464 (553)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (553)
.+++ .+-+++......+.+++.+.+|++.||+|.|+++..+.++.+++.++..+.... ....+++.=++.|....
T Consensus 69 ~ws~-~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~----~~~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 69 DWSS-TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI----GFYLLLVLRFLQGLGQG 143 (466)
T ss_pred cCCH-HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh----cchhhHHHHHHhHHHHh
Confidence 3444 678899999999999999999999999999999999999999998888876532 22244555566666666
Q ss_pred CcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh-hCchhHHHHHHHHHHHHHHHHHHhccc
Q 008804 465 SFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-LGAENIFLLFAAIAFLAVLFIVRTVPE 538 (553)
Q Consensus 465 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (553)
...|....+...-.|+++|++..++......+|.+++-++.|.+.+. .||...|++.+++.++..++.+++..+
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 66777778999999999999999999999999999999999999998 999999999999998888776666543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-08 Score=98.55 Aligned_cols=148 Identities=19% Similarity=0.130 Sum_probs=113.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc---hHH------HHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP---GLG------VLLVGRLLYGL 202 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~---~~~------~l~~~r~l~G~ 202 (553)
-|++..+..++.....+...+..+++..+.||+|||+.++.+..+..+..+++.... +.. ..+++.++..+
T Consensus 300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~ 379 (485)
T KOG0569|consen 300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII 379 (485)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999988888776532 111 12333333333
Q ss_pred Hhhh-hhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHH-HhcccCCc
Q 008804 203 GIGL-AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGI-GMWSLPPS 280 (553)
Q Consensus 203 ~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i-~~~~~~e~ 280 (553)
+.+. .-|...-+.+|.+|++.|..++++.....-+...+-...-..+.+..++ +.|++..+++++..+ ++..+|||
T Consensus 380 ~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred hhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCccc
Confidence 3222 4677888899999999999999998888888877776666665555533 677777777777655 55779998
Q ss_pred h
Q 008804 281 P 281 (553)
Q Consensus 281 p 281 (553)
.
T Consensus 458 k 458 (485)
T KOG0569|consen 458 K 458 (485)
T ss_pred C
Confidence 6
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-07 Score=93.76 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=120.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHhcch--------HHHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPG--------LGVLLVGRLLYGL 202 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grk~~~~~~~~~~~i~~~~~~~~~~--------~~~l~~~r~l~G~ 202 (553)
+|.+......+...+....-+..+++|+++|+ +||++.+.++.++..+|.++.+++.. ....+++-.+.++
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 67888899999999999999999999999995 59999999999999999988877421 2346677788899
Q ss_pred HhhhhhhhhhhHhhhccccc---cchhHHhHHHHHHHHHHHHHHHhhhcccCCC------CchHHHHhhhHHHHHHHHHH
Q 008804 203 GIGLAMHGAPLYIAETCPSQ---IRGTLISLKELFIVLGILLGYFVGSFQINAV------GGWRYMYGLSAPLALLMGIG 273 (553)
Q Consensus 203 ~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~------~~wr~~f~~~~~~~~~~~i~ 273 (553)
|.|+.-++..+...|.++++ +|...+.+++.+.++|.++++++.+++.... .+|...|.+.++..++.+++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754 3677889999999999999999988875321 26999999999888887765
Q ss_pred hc
Q 008804 274 MW 275 (553)
Q Consensus 274 ~~ 275 (553)
.+
T Consensus 178 f~ 179 (654)
T TIGR00926 178 FM 179 (654)
T ss_pred HH
Confidence 54
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-07 Score=95.60 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=96.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHhhhhhh
Q 008804 135 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY-----APGLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 135 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~ 209 (553)
+....+++.+...++..++.+++++++||+|+|+.+.++..+..++.+...+ ..+.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888878899999999999999999999999888877766655432 34577777888899999999999
Q ss_pred hhhhHhhhccc-------cccchhHHhHHHHHHHHHHHHHHHhhhcccCCC
Q 008804 210 GAPLYIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQINAV 253 (553)
Q Consensus 210 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~ 253 (553)
...+++.|..+ .++.|..++......-+|..+++.+.+++++..
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999965 344566889999999999999999988876543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-07 Score=94.57 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhhhhhhhhhhH
Q 008804 137 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY--APGLGVLLVGRLLYGLGIGLAMHGAPLY 214 (553)
Q Consensus 137 ~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 214 (553)
...+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777888899999999999999999999888776654443322 3577788888899999999999999999
Q ss_pred hhhccc-------cccchhHHhHHHHHHHHHHHHHHHhhhcccCCC
Q 008804 215 IAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQINAV 253 (553)
Q Consensus 215 i~~~~~-------~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~ 253 (553)
++|..+ +++.|...+.......+|..+|+.+++.+.+..
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999885 233466788888888999999999998877644
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-08 Score=94.53 Aligned_cols=139 Identities=37% Similarity=0.577 Sum_probs=115.6
Q ss_pred ccCch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHhhhh
Q 008804 132 FNLSA--VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG--LGVLLVGRLLYGLGIGLA 207 (553)
Q Consensus 132 ~~~s~--~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l~G~~~g~~ 207 (553)
++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+++++..+ .+.+++.|+++|++.+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 111 (338)
T COG0477 32 LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGL 111 (338)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHH
Confidence 44344 58899999999999999999999999999999998888876777777777776 999999999999999999
Q ss_pred hhhhhhHhhhcccc-ccchhHHhHHHH-HHHHHHHHHHHhhhcccCC-CCchHHHHhhhHHHHHHH
Q 008804 208 MHGAPLYIAETCPS-QIRGTLISLKEL-FIVLGILLGYFVGSFQINA-VGGWRYMYGLSAPLALLM 270 (553)
Q Consensus 208 ~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~lG~~~g~~l~~~l~~~-~~~wr~~f~~~~~~~~~~ 270 (553)
.+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+... ..+||..|.+........
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 112 LPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99999999999987 678999999888 5888888888777766544 127999776666665444
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.1e-08 Score=84.64 Aligned_cols=143 Identities=19% Similarity=0.153 Sum_probs=108.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY-ALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
+|+|+...+-+.+....-.++.+++.|.++||+|++...+.+..+. .++-.+..| +++.=+.+..+.|+..+.....
T Consensus 295 fGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcs 372 (459)
T KOG4686|consen 295 FGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACS 372 (459)
T ss_pred hCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999999999999998777655444 444444444 3333445667788887766666
Q ss_pred hhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHH--HHh-hhHHHHHHHHHHhcc
Q 008804 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY--MYG-LSAPLALLMGIGMWS 276 (553)
Q Consensus 211 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~--~f~-~~~~~~~~~~i~~~~ 276 (553)
....+....|+++.|++.|..+...++|..+.|++++++++..+++.+ +|. +.+.+++....+.+.
T Consensus 373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 677888889999999999999999999999999999999987644433 343 344444443333333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-07 Score=86.85 Aligned_cols=159 Identities=12% Similarity=-0.022 Sum_probs=118.8
Q ss_pred hHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 372 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
......|.+.+....+. .+++++......+..++.+..+++.+|+|.|+-++.++.++++++.++..... ...+..
T Consensus 31 l~diLip~l~~~f~ls~-~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~---~~~y~~ 106 (422)
T COG0738 31 LNDILIPHLKEVFDLTY-FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS---SKSYGF 106 (422)
T ss_pred cchhhHHHHHHHhCccH-HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh---hhhHHH
Confidence 34455666666677776 89999999999999999999999999999999999999999999988864332 223333
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh-------------------h
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL-------------------L 512 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------------------~ 512 (553)
.....+..+.+........+.++..+.+++....-+.+...++.+|++++|.+.+.+..+ .
T Consensus 107 FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~ 186 (422)
T COG0738 107 FLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADAS 186 (422)
T ss_pred HHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence 333333333333344455567888888888888889999999999999999999998873 1
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 008804 513 GAENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 513 g~~~~~~~~~~~~~~~~~~~~~ 534 (553)
.++.+|...+...++..+....
T Consensus 187 ~v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 187 SVQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHHh
Confidence 2566777777766665554433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=84.68 Aligned_cols=167 Identities=18% Similarity=0.115 Sum_probs=110.5
Q ss_pred hhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcC
Q 008804 367 ITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGG 446 (553)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (553)
....+.+..|.|.+-++.+++. .+...+.....++..+ .++.|.+.|++|++.++.++.+...++...+.......-.
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq-~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~ 92 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQ-SQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP 92 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCH-HHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC
Confidence 3345678899999999999987 7888888888888876 5888999999999999999999999998887765432211
Q ss_pred -chHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHH
Q 008804 447 -FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIA 525 (553)
Q Consensus 447 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 525 (553)
.+.+.+....+..+...............+.+| ++||++.|+.-....+++++...+...+.+. .....+.+.+...
T Consensus 93 ~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~ 170 (250)
T PF06813_consen 93 SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLP 170 (250)
T ss_pred ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 233333333333222222222233344556778 6899999999999999988888877766654 3223333444433
Q ss_pred HHHHHHHHHhcc
Q 008804 526 FLAVLFIVRTVP 537 (553)
Q Consensus 526 ~~~~~~~~~~~~ 537 (553)
.+..++...+.+
T Consensus 171 ~~v~l~~~~~vr 182 (250)
T PF06813_consen 171 AVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHhhhee
Confidence 333333333333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=86.81 Aligned_cols=179 Identities=25% Similarity=0.209 Sum_probs=138.5
Q ss_pred ccchhhhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-h
Q 008804 87 AFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-G 165 (553)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-G 165 (553)
-|+.+..|.+.+...+..+.+....++ +|.+..| -|+|..+.|++.+...+.....++....+.+|. .
T Consensus 204 vw~~~~aW~vtLfmGlqS~~~Y~~~~W----LP~ili~-------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n 272 (395)
T COG2807 204 VWRSPLAWQVTLFMGLQSLLYYIVIGW----LPAILID-------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKN 272 (395)
T ss_pred cccCchhHHHHHHHHhhHHHHHHHHHH----HHHHHHH-------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444555555555555555544444 4555545 799999999999999999999999999999976 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhcccc-ccchhHHhHHHHHHHHHHHHHHH
Q 008804 166 RKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPS-QIRGTLISLKELFIVLGILLGYF 244 (553)
Q Consensus 166 rk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~lG~~~g~~ 244 (553)
+|+..+....++.++.+.+.+.+.-..++- -++.|+|.|..++.+..++.+..+. ++-++-.++.+....+=..+||.
T Consensus 273 ~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~ 351 (395)
T COG2807 273 QRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPW 351 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhh
Confidence 778888888888888888887765433333 4999999999999999999988854 44556667777777777788999
Q ss_pred hhhcccCCCCchHHHHhhhHHHHHHHHHHhccc
Q 008804 245 VGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 277 (553)
Q Consensus 245 l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~ 277 (553)
+.|++-|..++|+..++..+...+++.+.-+..
T Consensus 352 l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 352 LFGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred hHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 999999998899999999888888877765543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=97.73 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=114.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccc
Q 008804 390 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPI 469 (553)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (553)
....+...++.++.++|.++.|.++||+|||+++.++.++..++.+..++ ...+....++=++.|++..+....
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~------a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF------APNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHhhccchhHH
Confidence 67778888999999999999999999999999999999998888866665 345566666666777777777778
Q ss_pred hhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 470 SWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 470 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
.+.+..|.++++.|+.+..+ ......++.+++...+++.. +|++.+++......+..++ +++.+|.
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 88999999999999999999 77888888999999988887 7888888877777666554 4444443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-08 Score=98.01 Aligned_cols=116 Identities=21% Similarity=0.240 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhhhhhhhhhhH
Q 008804 137 VQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMHGAPLY 214 (553)
Q Consensus 137 ~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 214 (553)
...+++..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5778888899999999999999999999999999999999999999988876 99999999999999999999999999
Q ss_pred hhhcccc-------ccchhHHhHHHHHHHHHHHHHHHhhhcccCC
Q 008804 215 IAETCPS-------QIRGTLISLKELFIVLGILLGYFVGSFQINA 252 (553)
Q Consensus 215 i~~~~~~-------~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~ 252 (553)
++|..+. ++.|...++......+|..+++.+.+.+++.
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999873 4458889999999999999999988877644
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=85.70 Aligned_cols=369 Identities=16% Similarity=0.159 Sum_probs=217.7
Q ss_pred ccCchhHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhh
Q 008804 132 FNLSAVQLG-LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g-~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
.|++..|+. -+.=...-.+.+.-++.=.+.|..-.|+++++-.+......++.-+.++.+.+-+.-++.|...+ ...+
T Consensus 36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIA 114 (433)
T KOG3810|consen 36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIA 114 (433)
T ss_pred CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHh
Confidence 567766653 22223334555566666678999999999998888888888888899999999999999999766 6678
Q ss_pred hhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCC-chHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhc
Q 008804 211 APLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAV 289 (553)
Q Consensus 211 ~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~ 289 (553)
-++++-+.++++++.++.+...+..-.|...|..++-.+++... ++...=++...-..++.++.+++|..++-+.-++.
T Consensus 115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~ 194 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL 194 (433)
T ss_pred hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc
Confidence 89999999999999999999999999999999888888776531 34444445555555566666778776642222111
Q ss_pred cCCCchhhhHHHHHHHHHhHhcCCCCCchhHHH-HHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhh
Q 008804 290 QGKGSLQEYKEQAISALGKLRRRPPGDKLSERQ-IEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQIT 368 (553)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (553)
+. +.........++ +.+..+ ....... -...+.+..++|...... +.+....+
T Consensus 195 ~~-----------~~~v~~~e~~~~--~~~~~~~l~~~~~~---------l~~~l~~~y~np~ll~WS----lWwAl~sc 248 (433)
T KOG3810|consen 195 ED-----------KISVGDLEEMNP--QASYMSYLRGAFVL---------LWRDLQECYSNPRLLKWS----LWWALASC 248 (433)
T ss_pred cc-----------cceeccchhcCc--cchhhHHHHHHHHH---------HHHHHHHHhcCchhhhhH----HHHHHhhc
Confidence 10 000000110000 000000 0000000 011233445555443322 33333444
Q ss_pred ChhhHHHhHHHHHHHcC-CCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCc
Q 008804 369 GQPSVLYYAGPILQSAG-FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF 447 (553)
Q Consensus 369 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (553)
+++.+..|...+-++.. .+.....|..=++..+.++++.+..|++.-++.|..-+.++..-...+.+++.. . ...+
T Consensus 249 g~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m-~--~t~~ 325 (433)
T KOG3810|consen 249 GYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM-A--QTQH 325 (433)
T ss_pred hhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh-h--cccc
Confidence 55556677766666653 222133455666677778888899999876666653333333222222222221 1 1345
Q ss_pred hHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC-----------chh
Q 008804 448 PLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-----------AEN 516 (553)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-----------~~~ 516 (553)
.|+..+...++...+........ ..+++....+.-|..+|++.++.-+-..+-.. .+.|..| +..
T Consensus 326 Iw~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~---iVvd~~g~~L~ir~Q~~~Y~~ 401 (433)
T KOG3810|consen 326 IWVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTFVALILQSILTL---IVVDDRGLGLDIRTQFVVYSS 401 (433)
T ss_pred eehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHHHHHHHHHhheE---EEEcccccCCCcceeEEEEee
Confidence 56666666666666665544333 44555556688899999987665554444333 3344322 334
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008804 517 IFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~ 534 (553)
-|++.+++.++++.+.+.
T Consensus 402 Yf~v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 402 YFIVLGVIFLIGFGIEYL 419 (433)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 578888888877665443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.2e-08 Score=94.69 Aligned_cols=150 Identities=13% Similarity=0.040 Sum_probs=116.8
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh
Q 008804 384 AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQ 463 (553)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (553)
.+... .+.+.....+.++.+++.+.++.+.||++..+.+....++.++..++-.. ..+...+++.-++.|.+.
T Consensus 76 l~~~~-~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~------~~s~~~~ialr~llGl~e 148 (495)
T KOG2533|consen 76 LKLVG-NQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA------VHSFPGLIALRFLLGLFE 148 (495)
T ss_pred cchhh-hhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHh
Confidence 33444 67889999999999999999999999999555554433333332222221 234555666677777888
Q ss_pred cCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhH------HhhCchhHHHHHHHHHHHHHHHHHHhcc
Q 008804 464 ISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK------ELLGAENIFLLFAAIAFLAVLFIVRTVP 537 (553)
Q Consensus 464 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 537 (553)
.+..|....++..-+.+++|+..+|+.+....+|+++|+.+...+. ...||++.|++-+++.++.++++++++|
T Consensus 149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 8888888899999999999999999999999999999999988764 3468999999999999999988888887
Q ss_pred cCC
Q 008804 538 ETK 540 (553)
Q Consensus 538 ~~~ 540 (553)
+..
T Consensus 229 ~~P 231 (495)
T KOG2533|consen 229 DNP 231 (495)
T ss_pred CCh
Confidence 543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-06 Score=82.31 Aligned_cols=121 Identities=25% Similarity=0.363 Sum_probs=102.6
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP--GLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 209 (553)
+|.++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++.-+.+ +.+.+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 555777788888888888889999999999999999999999999999999988866 788999999999999999999
Q ss_pred hhhhHhhhccc-------cccchhHHhHHHHHHHHHHHHHHHhhhcccCC
Q 008804 210 GAPLYIAETCP-------SQIRGTLISLKELFIVLGILLGYFVGSFQINA 252 (553)
Q Consensus 210 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~ 252 (553)
...++++|..+ .+.-|...+......=+|.+++..+.++.+..
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988764 23346777777777778888888777776543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-07 Score=80.07 Aligned_cols=343 Identities=16% Similarity=0.168 Sum_probs=175.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
++....++|.+.-+.+-..++...+.|.++|+-|||+.-+.-++.+.++++ .-.++.+-.++++|.+-|+..+..+.+-
T Consensus 67 YgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaF 145 (454)
T KOG4332|consen 67 YGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAF 145 (454)
T ss_pred cCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHH
Confidence 777888999998888888899999999999999999976554444444332 2347889999999999999999988887
Q ss_pred hhHh-hhccccccchhHHhHHHHHH--------HHHHHHHHHhhhcccCCCC-chHHHHhhhHHHHHHHHHHhcc-cCCc
Q 008804 212 PLYI-AETCPSQIRGTLISLKELFI--------VLGILLGYFVGSFQINAVG-GWRYMYGLSAPLALLMGIGMWS-LPPS 280 (553)
Q Consensus 212 ~~~i-~~~~~~~~r~~~~~~~~~~~--------~lG~~~g~~l~~~l~~~~~-~wr~~f~~~~~~~~~~~i~~~~-~~e~ 280 (553)
-++. .|.- ++|+.-.-+....+ .+-.+++.+.+..+++... |--.+|-..+.+..+...+.+- --|.
T Consensus 146 EsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~EN 223 (454)
T KOG4332|consen 146 ESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSEN 223 (454)
T ss_pred HHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhc
Confidence 6654 4443 23443322222221 2222333333434333321 3344555544444443322221 0110
Q ss_pred hhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHH
Q 008804 281 PRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGG 360 (553)
Q Consensus 281 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (553)
- ++..+.+..+.+.+ ...+.+.+++ ++.+...
T Consensus 224 y---------------gdps~~kdlltqf~------------------------------gaa~aiaSD~---ki~LLG~ 255 (454)
T KOG4332|consen 224 Y---------------GDPSENKDLLTQFK------------------------------GAARAIASDE---KIALLGA 255 (454)
T ss_pred c---------------CChhhhHHHHHHhh------------------------------HhHHHHhcch---HHHHHHH
Confidence 0 00001111111110 0112223332 2222223
Q ss_pred HHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCc--hhhHhHHHHHHHHHHHHH
Q 008804 361 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRR--PLLIGGVCGIALSLLLLS 438 (553)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~ 438 (553)
+........+.....|.|.+-.+... .--|+++..+.+..++|.-+..++..|-..| ..+.+.+.+..+.+.+..
T Consensus 256 iqsLFE~smytFVFLWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpi 332 (454)
T KOG4332|consen 256 IQSLFEGSMYTFVFLWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPI 332 (454)
T ss_pred HHHHHhhhhheeeeeecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence 33344444444555566654322111 2457778888888888888887766554332 334444444444333333
Q ss_pred HHHHhhc--CchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH--hhCc
Q 008804 439 AYYKILG--GFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE--LLGA 514 (553)
Q Consensus 439 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~--~~g~ 514 (553)
......+ ..+...++.++.+-.+.+. +.|...-+-.+..|.+.|++.+-....--++-..++- ...=.+ ..+.
T Consensus 333 lt~~vsP~kes~~~s~i~F~~~E~cvGl-fwPSimkmRsqyIPEearstimNfFRvPLnifvClvL--ynlh~~~~p~~t 409 (454)
T KOG4332|consen 333 LTSSVSPSKESPSESLIGFCLFEACVGL-FWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVL--YNLHVDAFPTTT 409 (454)
T ss_pred HHhccCCCcCCchHHHHHHHHHHHHHhh-cchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhh--eecccccCcccc
Confidence 2221111 1233344455555455544 4455556778888988888655443322222222111 110011 1234
Q ss_pred hhHHHHHHHHHHHHHHH
Q 008804 515 ENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 515 ~~~~~~~~~~~~~~~~~ 531 (553)
+..|-+..+...++.+.
T Consensus 410 r~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 410 RNMFGICSAFLFVASIL 426 (454)
T ss_pred chhhhhhHHHHHHHHHH
Confidence 46666666666655443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.9e-07 Score=90.07 Aligned_cols=140 Identities=17% Similarity=0.097 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchh
Q 008804 392 ATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISW 471 (553)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (553)
.+++.....+++.++.++.|+++|++|||+.+.++.+...++.++..... .+..+...=++.|.+.++...+..
T Consensus 91 ~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~------~~~~l~~GR~l~G~g~G~~~~~~p 164 (513)
T KOG0254|consen 91 QGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP------SWYQLIVGRILTGLGVGGASVLAP 164 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHhccchhhhhhcch
Confidence 37999999999999999999999999999999999999999988887632 344444444444444444445566
Q ss_pred hhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh--CchhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 472 LMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL--GAENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 472 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
.+.+|..|++.||...+..+....+|..++ .+.+....+. +|+..+.+..+.+++..+. .++.||+
T Consensus 165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 165 VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 899999999999999999999888776666 6666666553 7887777666666666655 6666654
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-08 Score=94.79 Aligned_cols=145 Identities=18% Similarity=0.199 Sum_probs=131.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
.+-.+.-.|........+-.+.-++.+++..|+|+-+++.+++.+..+=.+..+..+|.|..+...+++|+..+..+.+.
T Consensus 401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~ 480 (618)
T KOG3762|consen 401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI 480 (618)
T ss_pred cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence 55566667777778888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccccchhHHhHHHHH-HHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhccc
Q 008804 212 PLYIAETCPSQIRGTLISLKELF-IVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 277 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~-~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~ 277 (553)
.+|++...|++.|..+.++++.. .++|-.+|.++||.+...+ +=|..|++.++.+++.+++...+
T Consensus 481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-g~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-GARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-hhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998655 6799999999999999988 88999999999988877766543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.2e-07 Score=90.60 Aligned_cols=147 Identities=17% Similarity=0.167 Sum_probs=119.6
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc----------chHHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA----------PGLGVLLVGRLLYG 201 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~----------~~~~~l~~~r~l~G 201 (553)
+|.++.+.|++.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-++.+
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~ 362 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE 362 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence 89999999999999999999999999999999999999999999999988665321 34445666778999
Q ss_pred HHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCc-----hHHHHhh---hHHHHHHHHHH
Q 008804 202 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG-----WRYMYGL---SAPLALLMGIG 273 (553)
Q Consensus 202 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~-----wr~~f~~---~~~~~~~~~i~ 273 (553)
++.+........++.+..|+++++...+++.+..++|..+++.+++.+.+.. | ++..+.+ ..+..++.+..
T Consensus 363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~-g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI-GITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887655 3 3333332 33333333444
Q ss_pred hcccCC
Q 008804 274 MWSLPP 279 (553)
Q Consensus 274 ~~~~~e 279 (553)
.+++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 456774
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-05 Score=73.97 Aligned_cols=351 Identities=13% Similarity=-0.017 Sum_probs=185.1
Q ss_pred HHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhHHHHH-HHH
Q 008804 102 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD-----FLGRKRELII-AAV 175 (553)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d-----r~Grk~~~~~-~~~ 175 (553)
+.....|.-.+... .+|.+.+. =|+|.++.+...-++ .. ..--+.|.++.| |+||||..++ +..
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~a-------k~vSyt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ 107 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQA-------KGVSYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY 107 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcC-------CCcchhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence 33566777777766 66766653 477777776554332 12 224678999999 9999887543 444
Q ss_pred HHHHHHHHHHh-----------cchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHH
Q 008804 176 LYALGALTTAY-----------APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYF 244 (553)
Q Consensus 176 ~~~i~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~ 244 (553)
+.+....+.+. .++...+....++.-+.++.-..+.-.+.-.+..+++-|-+......+...|.+++..
T Consensus 108 llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ 187 (510)
T KOG3574|consen 108 LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNV 187 (510)
T ss_pred HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcc
Confidence 44444443333 2344445455567777777777888888888888999998888888888888888777
Q ss_pred hhhcccCC------CCchH---------HHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhH
Q 008804 245 VGSFQINA------VGGWR---------YMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKL 309 (553)
Q Consensus 245 l~~~l~~~------~~~wr---------~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (553)
+.-.+.+. ..+|. ...++.+.+.++.-.+..+..+++.. +..+|
T Consensus 188 ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~-------------~~~~e-------- 246 (510)
T KOG3574|consen 188 VFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE-------------SVDEE-------- 246 (510)
T ss_pred eeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch-------------hhhhh--------
Confidence 65554331 11232 22344455555544444443332210 00000
Q ss_pred hcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCc
Q 008804 310 RRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAA 389 (553)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (553)
.........+-++++++-|..+.........=+. +..-....+.-+.+.|.+.
T Consensus 247 ----------------------~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~g----f~a~da~t~LkLle~Gv~k- 299 (510)
T KOG3574|consen 247 ----------------------LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLG----FQAADALTSLKLLEHGVPK- 299 (510)
T ss_pred ----------------------hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHH----hhhhhhccchHHHHcCCCh-
Confidence 0000001111244556656555443322222221 1123333444566778877
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccc------CCchhhHhHHHHHHHHHHHHHHHHH-hhc---CchHHHHHHH---H
Q 008804 390 ADATRVSVVIGVFKLVMTWIAVAKVDDL------GRRPLLIGGVCGIALSLLLLSAYYK-ILG---GFPLVAVSAL---L 456 (553)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~------g~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~---~ 456 (553)
...++...+..-..++.....|.+...- -|+-...+...... ..+.+... ... ..+....+.. -
T Consensus 300 e~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~---t~Lv~~~~~~~~~~G~~~~~~~il~i~~y 376 (510)
T KOG3574|consen 300 EELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQ---TALVWWTPTLGHSDGTFPRGYYILLITSY 376 (510)
T ss_pred hHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHH---HHHHhhhcccccCCCceeechHHHHHHHH
Confidence 5555554444444455554444443211 11111222222111 12222111 111 1111111111 1
Q ss_pred HHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC
Q 008804 457 LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 513 (553)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 513 (553)
.+...+.........+..+.+.++...|+.+.+.|+..++|+---..+..++.|..+
T Consensus 377 ~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 377 AFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 222222222222334778889999999999999999999999888888888887643
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-05 Score=79.35 Aligned_cols=112 Identities=11% Similarity=-0.083 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCCc-hhhHhHHHHHHHHHHHHHHHHHhh-------cCchHHHHHHHHHHHHHH
Q 008804 391 DATRVSVVIGVFKLVMTWIAVAKVDDLGRR-PLLIGGVCGIALSLLLLSAYYKIL-------GGFPLVAVSALLLYVGCY 462 (553)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 462 (553)
..-.....+.++..+|+.+..+..- -++| +.+.+..++=.+..-++.+....+ -.+.+..++. .+..+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~-~~l~glt 385 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIIL-MLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHH-HHHHHHh
Confidence 4456777888999999986654321 1222 133222222222222222211110 0122333333 3344444
Q ss_pred hcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 008804 463 QISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 504 (553)
Q Consensus 463 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 504 (553)
.+........+..+..++++|..+-.+...+-.+|-.+|+.+
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556777888888888888777777777776666654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-05 Score=74.33 Aligned_cols=158 Identities=19% Similarity=0.071 Sum_probs=102.1
Q ss_pred hHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHH
Q 008804 376 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL 455 (553)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (553)
|.=.+++++|++. .+.+.+.....+...+...+.|.+.||+|||+..+...++..++++..- ......+++.
T Consensus 56 Y~Y~LY~~yg~~~-~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-------~~~~~~L~~G 127 (354)
T PF05631_consen 56 YLYALYESYGFSE-HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-------SSNYPVLLLG 127 (354)
T ss_pred hhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-------ccccHHHHHH
Confidence 3334557788887 7888888888889999999999999999999999988888888876543 2223333333
Q ss_pred HHHHHHHhcCcccchhh-hhc----ccCCccchhhHHHHHHH-HHHHHHHHHHHHhHHhHHhhC--chhHHHHHHHHHHH
Q 008804 456 LLYVGCYQISFGPISWL-MVS----EIFPLRTRGRGISLAVL-TNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFL 527 (553)
Q Consensus 456 ~~~~~~~~~~~~~~~~~-~~~----~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~ 527 (553)
=++.|..........-+ ++. .-+|++..+..++...+ .+.+.+++...+...+.+..| ...+|....++.++
T Consensus 128 RvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~ 207 (354)
T PF05631_consen 128 RVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAV 207 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 23333222222211111 122 33566666666666553 344555666666667777665 47889988888888
Q ss_pred HHHHHHHhcccCCC
Q 008804 528 AVLFIVRTVPETKG 541 (553)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (553)
+.+++....+|..+
T Consensus 208 ~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 208 AAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHhcccccCC
Confidence 88776665566543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-06 Score=82.56 Aligned_cols=187 Identities=19% Similarity=0.126 Sum_probs=127.3
Q ss_pred cchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHH----HHHHHHHHHHHHHhhcccCCchhhHh
Q 008804 350 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVI----GVFKLVMTWIAVAKVDDLGRRPLLIG 425 (553)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~d~~g~~~~~~~ 425 (553)
...+......++..+.............+......+.......+...... ++..++.++..|.++||+|||..+..
T Consensus 18 ~~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~ 97 (463)
T KOG2816|consen 18 ASMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLL 97 (463)
T ss_pred chhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHH
Confidence 33444444444555555443333333333322222222222333333333 67888899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 008804 426 GVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 505 (553)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 505 (553)
..+...+....+.+. .++.++ ..-..+++ ........+++++....+.|....|+.+.....+..++|.+.
T Consensus 98 ~~~~~~l~~~~~~~~-------~~~~~~-~~~l~g~~-~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~ 168 (463)
T KOG2816|consen 98 PLFGTILPALCLLFQ-------GYWFFL-LLGLSGGF-SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALG 168 (463)
T ss_pred HHHHHHHhHHHHHHH-------HHHHhh-hcccccch-hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 877777766666542 122222 22222222 233445568999999999999999999999999999999999
Q ss_pred HHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCCCHH
Q 008804 506 SPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLE 545 (553)
Q Consensus 506 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (553)
+.+....|+...|.+..+..++..+...+++||+..++.+
T Consensus 169 ~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 169 GYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 9999999999999999999999999888889887655433
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-05 Score=76.85 Aligned_cols=144 Identities=20% Similarity=0.148 Sum_probs=114.6
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHhcch---------------------
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPG--------------------- 189 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grk~~~~~~~~~~~i~~~~~~~~~~--------------------- 189 (553)
+|.+...+.-..+.+.-...+..+..+.++|-| ||-+++.++.++..++.++..++..
T Consensus 68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~ 147 (571)
T KOG1237|consen 68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP 147 (571)
T ss_pred hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence 777778888888888888888999999999966 8999999999998888666544221
Q ss_pred ----HHHHHHHHHHHHHHhhhhhhhhhhHhhhccc---cc---cchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHH
Q 008804 190 ----LGVLLVGRLLYGLGIGLAMHGAPLYIAETCP---SQ---IRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 259 (553)
Q Consensus 190 ----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~ 259 (553)
...++.+.-+..+|.|+.-+...++-+|-++ ++ .+...+.++....++|..++..+..+.-++. +|.+.
T Consensus 148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lg 226 (571)
T KOG1237|consen 148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLG 226 (571)
T ss_pred chHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceee
Confidence 1255666677888999999999999999998 22 2336788899999999999999888865665 99999
Q ss_pred HhhhHHHHHHHHHHhcc
Q 008804 260 YGLSAPLALLMGIGMWS 276 (553)
Q Consensus 260 f~~~~~~~~~~~i~~~~ 276 (553)
|.+..+..++++++++.
T Consensus 227 f~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 227 FGIPTVLNALAILIFLP 243 (571)
T ss_pred ccHHHHHHHHHHHHHHc
Confidence 99988887776665543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.1e-06 Score=77.01 Aligned_cols=144 Identities=22% Similarity=0.199 Sum_probs=122.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIAD-FLGRKRELIIAAVLYALGALTT---AYAPGLGVLLVGRLLYGLGIGLA 207 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d-r~Grk~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~ 207 (553)
||.+..|..-++.....|..++....|++.. |.++|+...+|+.+..++..+. +...+.+.+...-++.|++.|..
T Consensus 239 fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f 318 (403)
T PF03209_consen 239 FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLF 318 (403)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHH
Confidence 8999999999999999999999999999888 7788888888888877766664 44568899999999999999999
Q ss_pred hhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCC---------CCchHHHHhhhHHHHHHHHHHhc
Q 008804 208 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINA---------VGGWRYMYGLSAPLALLMGIGMW 275 (553)
Q Consensus 208 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~---------~~~wr~~f~~~~~~~~~~~i~~~ 275 (553)
.....+...+...+++.|..+|.+.....++..++..+++.+.|. ..+|-.+|.+.++..++.+++..
T Consensus 319 ~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 319 TVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988886542 12567778877777776665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00097 Score=66.32 Aligned_cols=117 Identities=14% Similarity=0.046 Sum_probs=81.6
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc---------c----------------
Q 008804 135 SAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA---------P---------------- 188 (553)
Q Consensus 135 s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~---------~---------------- 188 (553)
....+..+-....+ +..+...+..+++++++|.+++-+.+..+.....+.++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45566666665555 556668889999999999999887776666655555542 1
Q ss_pred ------hHHHHHHHHHHHHHHhhhhhh-hhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccC
Q 008804 189 ------GLGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 251 (553)
Q Consensus 189 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~ 251 (553)
+.|.+.+..++.-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.+++..+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333333333333333 356788999999999999999999999999999998888766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.6e-07 Score=63.56 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=72.4
Q ss_pred hhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 008804 107 FGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY 186 (553)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~ 186 (553)
.|.....+.+.+|.+.++ .++|.++.|++.+..++||.+|.+...++.++..+++.+..++++..+..+.+++
T Consensus 4 mGigRFayTplLP~M~~~-------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQAD-------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred hhhHHHHHHhHhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777888888877 8999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHH
Q 008804 187 APGLGVLL 194 (553)
Q Consensus 187 ~~~~~~l~ 194 (553)
.++++.+.
T Consensus 77 ~~~~~~w~ 84 (85)
T PF06779_consen 77 THSFWLWS 84 (85)
T ss_pred HhchHHHh
Confidence 99887653
|
Note that many members are hypothetical proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=81.05 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=103.3
Q ss_pred hHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc----cCCchhhH-hHHHHHHHHHHHHHHHHHhhc
Q 008804 372 SVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD----LGRRPLLI-GGVCGIALSLLLLSAYYKILG 445 (553)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 445 (553)
.+..|+.+++.+ .|.+. ..++.+..+.-+...+.-++.|+++|| +|||+..+ ++.+..+++..++........
T Consensus 27 ~~~~~l~~fyt~~~Gl~~-~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~ 105 (460)
T PRK11462 27 NVMLYMMFFYTDIFGIPA-GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSM 105 (460)
T ss_pred HHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCc
Confidence 345556555554 57766 789999999999999999999999997 57765554 455666665544432111001
Q ss_pred Cc-hHHHHHHHHHHHHHHhcCcccchhhhhcccCC-ccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC-------chh
Q 008804 446 GF-PLVAVSALLLYVGCYQISFGPISWLMVSEIFP-LRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-------AEN 516 (553)
Q Consensus 446 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-------~~~ 516 (553)
.. ..+..+..+++..++.....|.. ++..|+.+ +++|.+..+.......+|..+++.+..++....| |..
T Consensus 106 ~~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~ 184 (460)
T PRK11462 106 NGKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQG 184 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence 11 12233333334444444444443 67777766 6889999999999999988888888766665544 344
Q ss_pred HHHHHHHHHHHHHHHHHHhcccC
Q 008804 517 IFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
...+++++.+++..+++...+|+
T Consensus 185 ~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 185 GIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcceec
Confidence 44555555555555444444554
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0018 Score=62.69 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=97.7
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc---------ch---------------
Q 008804 135 SAVQLGLVVSGSLY-GALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA---------PG--------------- 189 (553)
Q Consensus 135 s~~~~g~~~s~~~~-~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~---------~~--------------- 189 (553)
.+..+.++-+...+ +..+..++.+++.+++.+.+++-..+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 46677888888888 888999999999999999999988777777777776652 11
Q ss_pred --------HHHHHHHHHHHHHHhhhhhh-hhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCc-----
Q 008804 190 --------LGVLLVGRLLYGLGIGLAMH-GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGG----- 255 (553)
Q Consensus 190 --------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~----- 255 (553)
.|...+...+.-+-.+.... .-.....|.+..+|-.|..++++.+.+++..++..+..++......
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~ 218 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEF 218 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHH
Confidence 13333333333333333333 3456678899999999999999999999999999988887653212
Q ss_pred ----hHHHHhhhHHHHHHHHHHhcc
Q 008804 256 ----WRYMYGLSAPLALLMGIGMWS 276 (553)
Q Consensus 256 ----wr~~f~~~~~~~~~~~i~~~~ 276 (553)
-+..+.+.+..+++++.+..+
T Consensus 219 ~~~~~~~~~~vi~~~~~i~~~l~~~ 243 (509)
T COG3202 219 KDLLLQILFIVIVILGIIAILLYRY 243 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444444444444433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.7e-06 Score=67.36 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccc
Q 008804 141 LVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCP 220 (553)
Q Consensus 141 ~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 220 (553)
.-.++......+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-++.|++.+..+.+.-.++.+..+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 34455566677788888999999999999999999998654443 56788899999999999999999999999999999
Q ss_pred cccchhHHhHHHHHHHHHHHHHHHhhhcc
Q 008804 221 SQIRGTLISLKELFIVLGILLGYFVGSFQ 249 (553)
Q Consensus 221 ~~~r~~~~~~~~~~~~lG~~~g~~l~~~l 249 (553)
+++|++..+++......+.++|.++...+
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888876654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.3e-05 Score=74.64 Aligned_cols=109 Identities=21% Similarity=0.333 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc---ch------HHHHHHHHHHHHHHhhhhhhhhhhHhhhccccc---cchhHHhHHHHHH
Q 008804 168 RELIIAAVLYALGALTTAYA---PG------LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQ---IRGTLISLKELFI 235 (553)
Q Consensus 168 ~~~~~~~~~~~i~~~~~~~~---~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 235 (553)
|.+++|.+++.+|.++..++ .. .+.++++-++.++|.|+.-+...++++|.++++ +|...+.+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57888999999999984443 22 368899999999999999999999999999765 4677888999999
Q ss_pred HHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhccc
Q 008804 236 VLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 277 (553)
Q Consensus 236 ~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~ 277 (553)
++|..++..+.+++-++. +|.+.|.+.++..+++++.++.-
T Consensus 82 n~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHHHhC
Confidence 999999999999988777 99999999998888877766543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=77.82 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=108.3
Q ss_pred HHHHH--cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC-chhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHH
Q 008804 379 PILQS--AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGR-RPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL 455 (553)
Q Consensus 379 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (553)
.|+++ .+-.. ...|+..+...++.+++.++.|++..|.+. |+.++.+.+++.++.++.......+++..+ ++.+.
T Consensus 59 pYl~~lD~~A~~-~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y-~mL~~ 136 (488)
T KOG2325|consen 59 PYLQKLDPTATA-TFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKY-LMLVA 136 (488)
T ss_pred hhhhhcCCCCCc-chhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHH-HHHHH
Confidence 45555 44444 678999999999999999999999999886 888888988888888887554443322222 22222
Q ss_pred HHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh------------h-CchhHHHHHH
Q 008804 456 LLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL------------L-GAENIFLLFA 522 (553)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------------~-g~~~~~~~~~ 522 (553)
=++. +.+.+.....-.|+++..-.+.|.++++..+....+|.++||.+...+... + -|+.+-++.+
T Consensus 137 R~l~-Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~ 215 (488)
T KOG2325|consen 137 RILT-GVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMA 215 (488)
T ss_pred HHHc-CcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHH
Confidence 2222 223333445568888877778899999888887777877777765433211 1 1456777888
Q ss_pred HHHHHHHHHHHHhcccC
Q 008804 523 AIAFLAVLFIVRTVPET 539 (553)
Q Consensus 523 ~~~~~~~~~~~~~~~~~ 539 (553)
++.++..++..++.+|.
T Consensus 216 i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 216 ILWIIYIVIILFFFKEV 232 (488)
T ss_pred HHHHHHHHHHHhheeec
Confidence 88888888777777664
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.6e-07 Score=84.47 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch----HHHHH----HHHHHHHHHhhhhhhhhhhHhhhcc
Q 008804 148 YGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPG----LGVLL----VGRLLYGLGIGLAMHGAPLYIAETC 219 (553)
Q Consensus 148 ~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~----~~~l~----~~r~l~G~~~g~~~~~~~~~i~~~~ 219 (553)
.++..+-.+...++|++|||+..+.|.+++++..+..+...| -..++ +..++.-+| -......+-+|.+
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~F 435 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIF 435 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhc
Confidence 344457777888999999999999999999999999998776 12222 233333333 3334455668999
Q ss_pred ccccchhHHhHHHHHHHHHHHHHHHhhhcccC-----CCCchHHHHhhhHHHHHHHHHHhcccCCchh
Q 008804 220 PSQIRGTLISLKELFIVLGILLGYFVGSFQIN-----AVGGWRYMYGLSAPLALLMGIGMWSLPPSPR 282 (553)
Q Consensus 220 ~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~-----~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~ 282 (553)
|.+-|+..-|+..+..-.|.++|.....++.+ .. +-|+.|++.+...++..+..+++||+..
T Consensus 436 ParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~-g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 436 PARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNI-GVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred hHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccc-cchHHHHHHHHHHHHhHheeEEeecccc
Confidence 99999999999999999999999999888877 44 8899999999999999999999998764
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.7e-05 Score=72.29 Aligned_cols=143 Identities=17% Similarity=0.063 Sum_probs=83.4
Q ss_pred HHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhHHHHH-HH
Q 008804 101 ALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIAD-----FLGRKRELII-AA 174 (553)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~d-----r~Grk~~~~~-~~ 174 (553)
.+.+++.|.-.+.....+|.+.++.. -++|.+|.|...-+ ...+. .-++|.++.| |+||||..++ .-
T Consensus 6 ~~LY~lQGiP~GL~~gsiPflL~~~~-----~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q 78 (544)
T PF13000_consen 6 VLLYFLQGIPLGLAFGSIPFLLQSMA-----KKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQ 78 (544)
T ss_pred HHHHHHcCcccccccccchhhhcccc-----CCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHH
Confidence 34456677777766556666655411 25677777654322 12221 3566777777 8999987554 33
Q ss_pred HHHHHHHHHHHhcc------------------------hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhH
Q 008804 175 VLYALGALTTAYAP------------------------GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISL 230 (553)
Q Consensus 175 ~~~~i~~~~~~~~~------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 230 (553)
.+.++..+..+... +...+....++.=+-++.--.+.-.+.-....+++++.+...
T Consensus 79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc 158 (544)
T PF13000_consen 79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC 158 (544)
T ss_pred HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence 33333333332211 111233333344444455556666777777888999999988
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 008804 231 KELFIVLGILLGYFVGSFQI 250 (553)
Q Consensus 231 ~~~~~~lG~~~g~~l~~~l~ 250 (553)
...+.+.|..++..+.-.+-
T Consensus 159 qtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 159 QTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHhHhhhhHHHHHHHHHhhC
Confidence 88888888888877755543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.9e-08 Score=100.04 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--h---cc-----hHHHHHHHHHHHHHHhhhhhhhhhhHh
Q 008804 146 SLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA--Y---AP-----GLGVLLVGRLLYGLGIGLAMHGAPLYI 215 (553)
Q Consensus 146 ~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~--~---~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i 215 (553)
..+...++.++...+.||+|||++++.+.++.+++.+..+ . .+ ++..+............+..+....+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~ 374 (451)
T PF00083_consen 295 LGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYT 374 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccc
Confidence 3345556667777999999999999999999888877775 1 11 122222222211111223446666888
Q ss_pred hhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHH-HHHHhcccCCchh
Q 008804 216 AETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL-MGIGMWSLPPSPR 282 (553)
Q Consensus 216 ~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~-~~i~~~~~~e~p~ 282 (553)
.|.+|.+.|+++.++......++.++++.+...+.+.. +-...+++.++++++ ..+..+++|||..
T Consensus 375 ~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 375 AELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL-GGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 99999999999999999998999999988888777665 313444554544444 4456678999763
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00011 Score=75.94 Aligned_cols=153 Identities=18% Similarity=0.071 Sum_probs=100.9
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhhHhHHHHHHHHHHHHHHHHHhhcC--chHHHHHHHHH
Q 008804 381 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGG--FPLVAVSALLL 457 (553)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 457 (553)
....+.+. ..+..+...+....-+..+++|+++|+ +|+++.+.++.++..++..++.+....... .........+.
T Consensus 15 ~~~lg~~~-~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa 93 (654)
T TIGR00926 15 LNFLGFSE-STSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA 93 (654)
T ss_pred HHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence 34466666 555555555666666778888899986 799999999988888888777642110000 01111222223
Q ss_pred HHHHHhcCcccchhhhhcccCCcc---chhhHHHHHHHHHHHHHHHHHHHhHHhHHhh-------CchhHHHHHHHHHHH
Q 008804 458 YVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTNFGSNAIVTFAFSPLKELL-------GAENIFLLFAAIAFL 527 (553)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~ 527 (553)
+..++..+.-|...+...+.++++ .+...+.+.....++|+.+++.+.+++.+.. +|...|.+.++++++
T Consensus 94 Lia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~i 173 (654)
T TIGR00926 94 LIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMIL 173 (654)
T ss_pred HHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHH
Confidence 333333444455557777777643 3677888888899999999999999887554 477788888777777
Q ss_pred HHHHHHH
Q 008804 528 AVLFIVR 534 (553)
Q Consensus 528 ~~~~~~~ 534 (553)
+.++...
T Consensus 174 a~lvf~~ 180 (654)
T TIGR00926 174 ALIVFMA 180 (654)
T ss_pred HHHHHHH
Confidence 7665544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.5e-05 Score=55.04 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=49.4
Q ss_pred hhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 008804 110 DIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 177 (553)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~ 177 (553)
..+.+.|.++...++ .|++..|+|.+.++..+...++.+++|.++||+++++.++....++
T Consensus 15 ~~g~~~Pfl~~~~~~-------~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQ-------LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHhhhhHhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 344444555555544 8999999999999999999999999999999999988887766543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0025 Score=60.65 Aligned_cols=89 Identities=16% Similarity=0.011 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHh---hhcccCC-CCchHHHHhhhH
Q 008804 189 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFV---GSFQINA-VGGWRYMYGLSA 264 (553)
Q Consensus 189 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l---~~~l~~~-~~~wr~~f~~~~ 264 (553)
.++..++.-.+.+++.|......+...++ +|++.-+..+ .+.+++..+..++ .....+. ..+=..-|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm----~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM----SGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH----hcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 46677777788888888888777776555 5555433333 2333333332222 2222222 112233455555
Q ss_pred HHHHHHHHHhcccCCchh
Q 008804 265 PLALLMGIGMWSLPPSPR 282 (553)
Q Consensus 265 ~~~~~~~i~~~~~~e~p~ 282 (553)
++.+++.++...+|..|.
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 666666666666777664
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00014 Score=51.92 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=54.8
Q ss_pred HHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHH
Q 008804 363 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVC 428 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 428 (553)
++..+.+...+..|.|.++++.|++. .+.|.+..+..+..+++.++.|.++||.++++.......
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~-~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSP-SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34444455568889999999999998 899999999999999999999999999999988775543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00021 Score=62.98 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=39.1
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHhhhcccC----CCCchHHHHhhhHHHHHHHHHHhccc
Q 008804 222 QIRGTLISLKELFIVLGILLGYFVGSFQIN----AVGGWRYMYGLSAPLALLMGIGMWSL 277 (553)
Q Consensus 222 ~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~----~~~~wr~~f~~~~~~~~~~~i~~~~~ 277 (553)
|+|+....+...++++|.++.-...-.-.+ ...+|++.+.+.+++.++.++++.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567787888888889998776554322101 01279999999999888877776554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0012 Score=63.33 Aligned_cols=113 Identities=18% Similarity=0.089 Sum_probs=83.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH---HHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 135 SAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL---GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 135 s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
..++..+....|.+|-.++.--...+ |+-+-+++.+-..+..+ .....-+.++.|.+++.-+..|+..|..++..
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt 356 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT 356 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 46788888888888777664432221 33232332222222222 22233456899999999999999999999999
Q ss_pred hhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcc
Q 008804 212 PLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 249 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l 249 (553)
...+.|-.++++|-.++|....+.++|..++.+++-.+
T Consensus 357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988664
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=63.58 Aligned_cols=122 Identities=15% Similarity=0.011 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHH--HHHHHHHHHHHHhcCcc
Q 008804 390 ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV--AVSALLLYVGCYQISFG 467 (553)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 467 (553)
..+-+...++.+..+...+.+-|+.||+|-|....++..+.+++..+=.+.....-++... .....-...+.......
T Consensus 79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim 158 (480)
T KOG2563|consen 79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL 158 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence 6777888999999999999999999999999999999988888877665432210011111 11111122222222222
Q ss_pred cchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh
Q 008804 468 PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 511 (553)
Q Consensus 468 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 511 (553)
.+..-...--+|+++|+.+..+..+.+.+|.+++..+-..+..+
T Consensus 159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 22223344458999999999999999899988887777666544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00097 Score=66.26 Aligned_cols=155 Identities=21% Similarity=0.193 Sum_probs=93.4
Q ss_pred HHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccC-----CchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHH
Q 008804 380 ILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLG-----RRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSA 454 (553)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (553)
+.++.+.++ .+...+.....+.- ...++.|.++|-+. ||..++++.++..++.+.+...... ..+.....+.
T Consensus 16 l~~~l~ls~-~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-~~s~~~~~~~ 92 (433)
T PF03092_consen 16 LKDDLGLSP-AQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-ESSAAIAVVL 92 (433)
T ss_pred HHHHcCCCH-HHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-cchhhhHHHH
Confidence 445677776 55555555554443 45778889999873 4444555555554444444432211 1112222222
Q ss_pred HHHHHHHHhcCcccchhhhhcccCC--ccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHH
Q 008804 455 LLLYVGCYQISFGPISWLMVSEIFP--LRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFI 532 (553)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 532 (553)
+++...+.. ..-...-++..|... ++.+|...+....+..+|+.++..+.|.+.+..+++..|.+.+.+..+..+..
T Consensus 93 l~la~~g~a-~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~ 171 (433)
T PF03092_consen 93 LFLASFGYA-FADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVA 171 (433)
T ss_pred HHHHHHHHH-HHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHH
Confidence 222222222 112233355555542 23378888888999999999999999999999999999988888777776666
Q ss_pred HHhccc
Q 008804 533 VRTVPE 538 (553)
Q Consensus 533 ~~~~~~ 538 (553)
+++.+|
T Consensus 172 ~~~~~e 177 (433)
T PF03092_consen 172 LFLLEE 177 (433)
T ss_pred HHhhhh
Confidence 666665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0034 Score=51.82 Aligned_cols=108 Identities=13% Similarity=-0.038 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhh
Q 008804 394 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLM 473 (553)
Q Consensus 394 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (553)
.-..+......+..++.+.+.+++|.|+.++++.++..+-...... .+.+..+....+.+.+.+..+. ..-.+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~~~~l~~~s~l~G~~~a~lW~-aqg~y 113 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PNSYTLYPASALLGFGAALLWT-AQGTY 113 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHhhhhHHhhH-hhhHH
Confidence 3344555666777788889999999999999988877765554432 2234444444444444444444 33477
Q ss_pred hcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHh
Q 008804 474 VSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPL 508 (553)
Q Consensus 474 ~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 508 (553)
+.+...++.+++..++...+...+.++|..+.-.+
T Consensus 114 lt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 114 LTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999998888888877777655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.37 E-value=3e-05 Score=78.62 Aligned_cols=176 Identities=14% Similarity=0.008 Sum_probs=1.5
Q ss_pred HHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHH
Q 008804 359 GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLS 438 (553)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 438 (553)
.++..+.+......+..-++.+-++.++++ .+.|++...+-++.++..++..++.+|..|-+++-.+.++++++.+++.
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S-~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSS-SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence 334444444433344555566667788888 8999999999999999999999999998888888888888888888776
Q ss_pred HHHHhhc-----------------------------------------Cc---hHHHHHHHHHHHHHHhcCcccchhhhh
Q 008804 439 AYYKILG-----------------------------------------GF---PLVAVSALLLYVGCYQISFGPISWLMV 474 (553)
Q Consensus 439 ~~~~~~~-----------------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (553)
+-....+ .. .+..+++.-++.|.+.....++..+|+
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 4211100 00 122233333444444455566778999
Q ss_pred cccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh---------------------hC-chhHHHHHHHHHHHHHHHH
Q 008804 475 SEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL---------------------LG-AENIFLLFAAIAFLAVLFI 532 (553)
Q Consensus 475 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~ 532 (553)
-|.++++..+...|+......+|-++|-.+.+..... .| |+..|++.+.+.++.++..
T Consensus 167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl 246 (539)
T PF03137_consen 167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL 246 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887777766655421 23 5556777777776666655
Q ss_pred HHh
Q 008804 533 VRT 535 (553)
Q Consensus 533 ~~~ 535 (553)
+.+
T Consensus 247 ~~F 249 (539)
T PF03137_consen 247 FFF 249 (539)
T ss_dssp ---
T ss_pred HcC
Confidence 444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.012 Score=59.60 Aligned_cols=136 Identities=23% Similarity=0.140 Sum_probs=83.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH-HHHHHH-HHHHHH----HhcchH-HHHHHHHHHHHHHh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELII-AAVLYA-LGALTT----AYAPGL-GVLLVGRLLYGLGI 204 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~-~~~~~~-i~~~~~----~~~~~~-~~l~~~r~l~G~~~ 204 (553)
+|.+..+.+.+.+++++|.++|+.+.+++.++.-++...+- ++.+.+ ++..+. ++...+ ..++..-++.|+..
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999988754333332221 111111 111111 111111 22234445677888
Q ss_pred hhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccC-CCCchHHHHhhhHHHHHH
Q 008804 205 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN-AVGGWRYMYGLSAPLALL 269 (553)
Q Consensus 205 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~-~~~~wr~~f~~~~~~~~~ 269 (553)
|...|....+..+... ++-+...|-.+....+|.++|.++.++++- ..+..+..+++ +.+.++
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~-a~l~~~ 188 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALT-GSLNLL 188 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHH
Confidence 8888877776655332 235677889999999999999999888765 34234444444 444433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.017 Score=57.31 Aligned_cols=120 Identities=10% Similarity=0.006 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCc---------------------
Q 008804 390 ADATRVSVVIGVFKLVM-TWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGF--------------------- 447 (553)
Q Consensus 390 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 447 (553)
+...++-....+...+. .++.+++++|++|++............++++.+......+.
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 34455555454444444 78889999999999988776666666555555442211010
Q ss_pred ----hHHHHHHHHHHHHHHhcCccc-chhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhH
Q 008804 448 ----PLVAVSALLLYVGCYQISFGP-ISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK 509 (553)
Q Consensus 448 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 509 (553)
..+....+.+..-.++....+ +.|.+++|.+..++..+-+++....+++|..+++.+..++.
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112222223333333333 67899999999999999999999999999999999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0028 Score=65.03 Aligned_cols=183 Identities=13% Similarity=0.007 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHH
Q 008804 353 KAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIAL 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 432 (553)
..++++..+..+.+......+..-...+-++.++++ .+.|++...+-++..+...+..+..-|..|-+++-++.+++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~S-s~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISS-SQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCC-CcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence 344555555555555443444444455555677777 7799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh----------------c---------------------------C---chHHHHHHHHHHHHHHhcCc
Q 008804 433 SLLLLSAYYKIL----------------G---------------------------G---FPLVAVSALLLYVGCYQISF 466 (553)
Q Consensus 433 ~~~~~~~~~~~~----------------~---------------------------~---~~~~~~~~~~~~~~~~~~~~ 466 (553)
+.++..+--... . . ..+.++++..++.|.+....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 888876531110 0 0 13344455555666666666
Q ss_pred ccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh------------------hC-chhHHHHHHHHHHH
Q 008804 467 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL------------------LG-AENIFLLFAAIAFL 527 (553)
Q Consensus 467 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------------------~g-~~~~~~~~~~~~~~ 527 (553)
.++..+|+-|...+++.....|+..++..+|-++|-.+.+.+... .| |+..|++.+.+.++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999988888887777766532 23 55667777777777
Q ss_pred HHHHHHHhc
Q 008804 528 AVLFIVRTV 536 (553)
Q Consensus 528 ~~~~~~~~~ 536 (553)
.++..+++-
T Consensus 335 ~a~p~f~fP 343 (735)
T KOG3626|consen 335 SAVPLFFFP 343 (735)
T ss_pred HHHHHHhCc
Confidence 777555543
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0006 Score=61.26 Aligned_cols=134 Identities=14% Similarity=0.058 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhc
Q 008804 139 LGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAET 218 (553)
Q Consensus 139 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 218 (553)
.|.+.-+-.+...+..+.+....||+---+=+.+..++.+.+.++.+++++.++-+++-.+..++.|.....-.++-+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 4455555556667777777788888754333455667778888999999999999999999999988777766655333
Q ss_pred cccccchhHHhHHHHHHHHHHHHHHHhhhcccCCC-CchHHHHhhhHHHHHHHHHHhccc
Q 008804 219 CPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-GGWRYMYGLSAPLALLMGIGMWSL 277 (553)
Q Consensus 219 ~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~-~~wr~~f~~~~~~~~~~~i~~~~~ 277 (553)
++ ....+.+..+.+...++|..--..+.+.. ..-|...++...+.++..+..+++
T Consensus 143 Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 143 YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 33 23455555555555556555444443311 156667777666665555555444
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.038 Score=52.03 Aligned_cols=148 Identities=23% Similarity=0.163 Sum_probs=91.2
Q ss_pred HHHhHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHH
Q 008804 373 VLYYAGPILQSAGFSAA-ADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 451 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (553)
.....+.+..+.+.... ...+.......+...++.++.|.+.||.|||+.+..+.....++.+...+. .......
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 96 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA----PNVGLAL 96 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----ccchHHH
Confidence 44455555555554432 257788888888888888999999999999977776665433332222221 1112222
Q ss_pred HHHHHHHHHHHhcCcccchhhhhcccCCc-cchhhHHHHHHH-HHHHHHHHHHHHhHHhHHh--hCchhHHHHHHHH
Q 008804 452 VSALLLYVGCYQISFGPISWLMVSEIFPL-RTRGRGISLAVL-TNFGSNAIVTFAFSPLKEL--LGAENIFLLFAAI 524 (553)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~ 524 (553)
........+.......+....+..|..|. +.|+...+.... ...++..+++.+.+.+... .+|+..+......
T Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 22222223444444556677888999887 578888888877 5777878888766666654 3455544444333
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.096 Score=53.27 Aligned_cols=144 Identities=18% Similarity=0.133 Sum_probs=71.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHH---HHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Q 008804 385 GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCG---IALSLLLLSAYYKILGGFPLVAVSALLLYVGC 461 (553)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (553)
|.+. ...+.+...+.++..+|+.+++++.++..++.. .+-..+ .+++..++....... ..........++..++
T Consensus 46 G~s~-~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~ 122 (521)
T PRK03612 46 GDSV-TQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQ-GLSRLLLYVLVLLIGL 122 (521)
T ss_pred CchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4433 566677777777777888777776533222211 111111 111111111111000 0111111222222233
Q ss_pred HhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH-hhCchhHHHHHHHHHHHHHHHH
Q 008804 462 YQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE-LLGAENIFLLFAAIAFLAVLFI 532 (553)
Q Consensus 462 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~ 532 (553)
..+...|+..-+..+. ..+..+...|-......+|+++|+.+.+.+.- .+|.....++.+.+.++.+++.
T Consensus 123 l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 123 LIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3333345543333322 22234667788888899999999999988764 6786666666666655555433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.14 Score=49.49 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=96.0
Q ss_pred hHHHHH-HH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 008804 376 YAGPIL-QS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVS 453 (553)
Q Consensus 376 ~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (553)
|+..|+ .. .+++..+...-+.-...-..+...+....+.|.++.|++++++.+...+...++.+ ......+-
T Consensus 25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~------~~sv~~mq 98 (412)
T PF01770_consen 25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF------GTSVLAMQ 98 (412)
T ss_pred cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH------HCcHHHHH
Confidence 444444 33 56666333334444444556666777778999999999999888877777666654 23344444
Q ss_pred HHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC--chhHHHHHHHHHHHHHHH
Q 008804 454 ALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~ 531 (553)
+.-++.|..... -...++++-...|+++--++.+.......+|.+++..++-.+...-+ +.....+..+...++.++
T Consensus 99 ~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 99 LMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI 177 (412)
T ss_pred HHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 444444443322 33445777777798998999999999998998888887776665333 444444444444444443
Q ss_pred HHHhccc
Q 008804 532 IVRTVPE 538 (553)
Q Consensus 532 ~~~~~~~ 538 (553)
. +++|.
T Consensus 178 ~-~fLP~ 183 (412)
T PF01770_consen 178 A-LFLPM 183 (412)
T ss_pred H-HHcCC
Confidence 3 33443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.058 Score=52.97 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=89.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------cc----hHHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAY------AP----GLGVLLVGRLLYG 201 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~------~~----~~~~l~~~r~l~G 201 (553)
-|+++..+|.+-+...+....+.+...++.+|+|..+.=++++....+...++.. .+ +...++.+-.+.=
T Consensus 288 ~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR 367 (432)
T PF06963_consen 288 QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR 367 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999888877776654433333321 22 3334444444444
Q ss_pred HHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcc
Q 008804 202 LGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 249 (553)
Q Consensus 202 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l 249 (553)
+|.=....+..-++.|..|+++||...|.-.+..++--++...++-.+
T Consensus 368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 454446667778899999999999999999999998888887776543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.11 Score=51.03 Aligned_cols=107 Identities=19% Similarity=0.294 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHHHHHHHHHhc------------------chHHHHHHHHHH
Q 008804 141 LVVSGSLYGALLGSILVYSIAD---FLGRKRELIIAAVLYALGALTTAYA------------------PGLGVLLVGRLL 199 (553)
Q Consensus 141 ~~~s~~~~~~~i~~~~~G~l~d---r~Grk~~~~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l 199 (553)
+-.-...+|..+++.+.+.+.+ ++||++.+.++.++..++.++.-.. +++...++.-++
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence 3333344555556666666665 5789999999999998888887552 246677888899
Q ss_pred HHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhc
Q 008804 200 YGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 248 (553)
Q Consensus 200 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~ 248 (553)
.|++-+......+.++.+.. +++|..+.++...-..++..++......
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999 5778889998888888877776665544
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00048 Score=65.09 Aligned_cols=110 Identities=9% Similarity=-0.138 Sum_probs=2.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhc--------CchHHHHHHHHHHHHHHhcC
Q 008804 394 RVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILG--------GFPLVAVSALLLYVGCYQIS 465 (553)
Q Consensus 394 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 465 (553)
.....++++..+|+.+..+..-+..+++.+.+..+.=.+..-++......+. .+.++. ++..+..++..+.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~-~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWF-IILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHH-HHHHHHHHHccch
Confidence 4566788999999998887432211333333322222222222221111100 122222 3333344444445
Q ss_pred cccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 008804 466 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFA 504 (553)
Q Consensus 466 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 504 (553)
.......+..+..++++|..+-.+..++-.+|-.+|..+
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --HHHH---------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666778888888888877777666666666655554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.021 Score=55.84 Aligned_cols=115 Identities=11% Similarity=-0.076 Sum_probs=77.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhcC---chHHHHHHHHHHHHHHhcCcccchhhhhcccCCcc---chhhHHHHHHHHH
Q 008804 421 PLLIGGVCGIALSLLLLSAYYKILGG---FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLR---TRGRGISLAVLTN 494 (553)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~ 494 (553)
|++.++.++..++.+++.+....... .....+...+.+.+.+.++.-|....+..|.++++ .+.+.+.......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 45667777888887776554321111 11122333333344455566677778888888765 4667788889999
Q ss_pred HHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHh
Q 008804 495 FGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRT 535 (553)
Q Consensus 495 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 535 (553)
++|+.++..+.+++.++.||...|.+.++..+++.+..+.-
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999888888777755543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.011 Score=56.67 Aligned_cols=134 Identities=19% Similarity=0.090 Sum_probs=84.7
Q ss_pred hhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc----cCCchhhHhH-HHHHHHHHHHHHHHHHhh-
Q 008804 371 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD----LGRRPLLIGG-VCGIALSLLLLSAYYKIL- 444 (553)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~-~~~~~~~~~~~~~~~~~~- 444 (553)
..-..|++.++++.|... ...+.......+.+++.+++.|..+|| +||||..+.. .....++++++.......
T Consensus 49 A~elsy~tPyl~~lGvph-k~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~ 127 (498)
T KOG0637|consen 49 ALELSYLTPYLQSLGVPH-KWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGL 127 (498)
T ss_pred HHHhccccHHHHHcCCCc-ccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhH
Confidence 345668888889999887 567777777778889999999999996 6888876654 444455555444322110
Q ss_pred ----cCch---HHHHHH----HHHHHHHHhcCcccchhhhhcccCCccchhh-HHHHHHHHHHHHHHHHHHHhH
Q 008804 445 ----GGFP---LVAVSA----LLLYVGCYQISFGPISWLMVSEIFPLRTRGR-GISLAVLTNFGSNAIVTFAFS 506 (553)
Q Consensus 445 ----~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~~~~g~~~~~~~~g 506 (553)
+... ...+.. +-+.-........|.- ++..++..++++.+ +.+....+..+|+.+|=.+.+
T Consensus 128 ~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 128 LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 1111 111111 1122223333444554 78888888777777 888888888888776655444
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.057 Score=39.02 Aligned_cols=66 Identities=18% Similarity=0.047 Sum_probs=57.5
Q ss_pred HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHH
Q 008804 373 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSA 439 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 439 (553)
+...+|...++.+++. .+.+++.+...++.++|.+...++.++..+++.+..+.+...+..+.+.+
T Consensus 11 yTplLP~M~~~~~ls~-~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSL-SQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHhHhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888887 89999999999999999999999999988888888888888888777775
|
Note that many members are hypothetical proteins. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.64 Score=46.21 Aligned_cols=110 Identities=18% Similarity=0.169 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHH--HHHHHHHHHHHHHh---------cchHHHHHHHHHHHHHHh
Q 008804 138 QLGLVVSGSLYGALLGSILVYSIADFLGRK--RELII--AAVLYALGALTTAY---------APGLGVLLVGRLLYGLGI 204 (553)
Q Consensus 138 ~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk--~~~~~--~~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~ 204 (553)
..-++...|.++-.+|..+..+.. .-++| ++++. .=+++.-..++|.. -++-+..++..++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 344556666666666666443321 11222 33322 22223333344432 246677888899999999
Q ss_pred hhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhc
Q 008804 205 GLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 248 (553)
Q Consensus 205 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~ 248 (553)
|-....+..+..+..++++|..+..+...+..+|..+|..++-.
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988887544
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.032 Score=49.54 Aligned_cols=158 Identities=15% Similarity=0.064 Sum_probs=81.0
Q ss_pred hHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHH
Q 008804 376 YAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSAL 455 (553)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (553)
|+-++++.+++.. .+.+.+........++...+.|-+.||.|||+..+...+...++++.=- ...+-.+...
T Consensus 59 YvYyLYstYgFgk-G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKh-------SpqYkVLmVG 130 (454)
T KOG4332|consen 59 YVYYLYSTYGFGK-GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH-------SPQYKVLMVG 130 (454)
T ss_pred eeeeeehhcCccC-CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhc-------CCceEEEeeh
Confidence 3333456677776 6777777666677778888889999999999987765555555443211 1111111111
Q ss_pred HHHHHHH-hcCcccchhhhhcccC-----CccchhhHHHHHH-HHHHHHHHHHHHHhHHhHHhhC--chhHHHHHHHHHH
Q 008804 456 LLYVGCY-QISFGPISWLMVSEIF-----PLRTRGRGISLAV-LTNFGSNAIVTFAFSPLKELLG--AENIFLLFAAIAF 526 (553)
Q Consensus 456 ~~~~~~~-~~~~~~~~~~~~~~~~-----p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~ 526 (553)
=..+|.. ...+...-.=++.|.. |.+.....++=.. +.+.+.++++......+.|.++ +-.+|-..+.+..
T Consensus 131 R~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLa 210 (454)
T KOG4332|consen 131 RVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLA 210 (454)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 1111111 1111111112344543 2232333333222 2244555666666666777654 6677776666666
Q ss_pred HHHHHHHHhcccCCC
Q 008804 527 LAVLFIVRTVPETKG 541 (553)
Q Consensus 527 ~~~~~~~~~~~~~~~ 541 (553)
++..+.+.-..|..+
T Consensus 211 igmAvil~~W~ENyg 225 (454)
T KOG4332|consen 211 IGMAVILSSWSENYG 225 (454)
T ss_pred HHHHHHHhhhhhccC
Confidence 665554433334333
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.1 Score=46.03 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=101.2
Q ss_pred HhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhhHhHHHHHHHHHHHHHHHHHhhcC-------
Q 008804 375 YYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKILGG------- 446 (553)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 446 (553)
..+.++....+... ..+.-.............+++++++|. +||-+++.++.++..++..++.........
T Consensus 59 nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 59 NLVTYLTLELHASG-GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred HHHHHHHHHhccch-HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 33334445555555 455555555666667777889999997 588888888888887776666554432210
Q ss_pred ----------ch--HHHHHHHHHHHHHHhcCcccchhhhhcccCC----ccchh--hHHHHHHHHHHHHHHHHHHHhHHh
Q 008804 447 ----------FP--LVAVSALLLYVGCYQISFGPISWLMVSEIFP----LRTRG--RGISLAVLTNFGSNAIVTFAFSPL 508 (553)
Q Consensus 447 ----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~--~~~g~~~~~~~~g~~~~~~~~g~l 508 (553)
.. ...+...+.....+.++.-|....+-+|-++ .+.+. .-+....+..++|..++-.+.-++
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 11 1112222222223344445666677777777 22223 556667777888888888888888
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHH
Q 008804 509 KELLGAENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 509 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 534 (553)
.++.||...|.+..++.+++.++++.
T Consensus 218 q~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 218 QDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred hhcccceeeccHHHHHHHHHHHHHHc
Confidence 89999999998888887777665543
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=5.3 Score=37.26 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhcc
Q 008804 148 YGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETC 219 (553)
Q Consensus 148 ~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 219 (553)
+..+..+++.+.+..++|-|+.++++...+... +..-+-+.+..++..-.+.|++.+..+..--+|+++.-
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 444555666668999999999999988877653 23334577889999999999999999888777776654
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.51 E-value=5.5 Score=40.18 Aligned_cols=108 Identities=12% Similarity=-0.017 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhh-----cC---------------------chHHHHHHH
Q 008804 402 FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL-----GG---------------------FPLVAVSAL 455 (553)
Q Consensus 402 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------------~~~~~~~~~ 455 (553)
+.++...+..++++++++.++..+........+.++++..... ++ ..|.. ..+
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~-slf 149 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTF-SLF 149 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHH-HHH
Confidence 4455677788999999999987766655555555555432110 00 01111 111
Q ss_pred HHHHHHHhcCc-ccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH
Q 008804 456 LLYVGCYQISF-GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE 510 (553)
Q Consensus 456 ~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 510 (553)
.+..-.++... .-+.|.++.|..+.++..+-+++.....++|.++++.+...+.+
T Consensus 150 Yv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 150 YVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 22468899999999999999999999999999999998888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.45 E-value=9.5 Score=37.02 Aligned_cols=53 Identities=2% Similarity=-0.247 Sum_probs=26.5
Q ss_pred HHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008804 363 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 417 (553)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 417 (553)
........+.+.+-.+++.+...... . +-.+...+.+.+.+..++.-.+--+.
T Consensus 27 GiG~LlpWN~fiTa~~y~~~~~~~~~-~-~~~F~~~~~~~a~i~~ll~~~~n~~~ 79 (406)
T KOG1479|consen 27 GIGTLLPWNMFITASDYYYYRFPGYH-N-SKNFTSSYTLAAQIPLLLFNLLNAFL 79 (406)
T ss_pred hcccccchHhhhccHHHHHhhcCCCc-h-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555666666654444 2 44555555555555555554444443
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.9 Score=39.66 Aligned_cols=122 Identities=19% Similarity=0.058 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH------hc------chHHHHHHHHHHHHHHhhhhh--hhh-
Q 008804 147 LYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTA------YA------PGLGVLLVGRLLYGLGIGLAM--HGA- 211 (553)
Q Consensus 147 ~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~------~~------~~~~~l~~~r~l~G~~~g~~~--~~~- 211 (553)
.....+..++.|...|+..|+|++...+.+.-++.++++ +. .++..+..+-++.-.-.+... ...
T Consensus 73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~ 152 (503)
T KOG2601|consen 73 SGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAG 152 (503)
T ss_pred HhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344566778889999999999999887766544333332 22 245555544444332222111 111
Q ss_pred -hhHhhhcc----ccccchhH---HhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHH
Q 008804 212 -PLYIAETC----PSQIRGTL---ISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL 269 (553)
Q Consensus 212 -~~~i~~~~----~~~~r~~~---~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~ 269 (553)
..+-.||. ..+.+... .+..-..-..-..+.|.+.|.+.... +-|..-.+.++-.++
T Consensus 153 ~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfv-sl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 153 TILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFV-SLRASAGTFAAWALV 217 (503)
T ss_pred eEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceee-chhhhhhhhHHHHHH
Confidence 11223443 22333333 35555566677889999999887766 677654444444444
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.62 Score=42.65 Aligned_cols=118 Identities=16% Similarity=0.080 Sum_probs=82.8
Q ss_pred ccCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhh
Q 008804 132 FNLS-AVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMH 209 (553)
Q Consensus 132 ~~~s-~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 209 (553)
+..+ +.|.-|....|.+|..+..--.-..--++ ---.++-.-.+++.+...+..+.+++|..++.-+..|+-.|..++
T Consensus 282 ~sls~~sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYV 361 (409)
T KOG3880|consen 282 FSLSKDSQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYV 361 (409)
T ss_pred CccchhhcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHH
Confidence 4444 34688999988887655322111111110 001112223344455566677899999999999999999999998
Q ss_pred hhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcc
Q 008804 210 GAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 249 (553)
Q Consensus 210 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l 249 (553)
...--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus 362 NTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 362 NTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 8888888888899999999999999999999998887654
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.22 E-value=4.4 Score=38.69 Aligned_cols=141 Identities=15% Similarity=0.029 Sum_probs=63.2
Q ss_pred HHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHH---HHHHHHHHHHHHHHHHHhhcccCCchhhHh-HHHHHHHHHHH
Q 008804 361 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRV---SVVIGVFKLVMTWIAVAKVDDLGRRPLLIG-GVCGIALSLLL 436 (553)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~ 436 (553)
+.+..+..-+.... -.|.+++..+.+- ...+.+ .-++.+=-+-+.++=....+|+||||..++ +..+.+..+..
T Consensus 38 ~LYllQGiP~GL~~-~iP~lL~ak~vSy-t~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mll 115 (510)
T KOG3574|consen 38 FLYLLQGIPLGLIG-AIPLLLQAKGVSY-TSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLL 115 (510)
T ss_pred HHHHHcCCchhHhh-hhHHHhcCCCcch-hhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHH
Confidence 44555555555454 7888888666554 222222 223322222222333344459999987654 33333333333
Q ss_pred HHHHHHh--h-c-CchHHHHH--HHHHHHHHHhcCcc-cchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 008804 437 LSAYYKI--L-G-GFPLVAVS--ALLLYVGCYQISFG-PISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAF 505 (553)
Q Consensus 437 ~~~~~~~--~-~-~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 505 (553)
+...... . + ..+..... .++++.+.. +.. ...-.+...+..+++-|-+..........|.+++..++
T Consensus 116 Ls~~v~~~~g~ng~~p~v~~lt~~f~LLnfla--AtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 116 LSYLVDRGLGGNGGLPNVVALTLLFLLLNFLA--ATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HhhCCCcccccCCCCcchHHHHHHHHHHHHHH--hhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 3321100 0 0 11111111 111221111 111 11223444455667766666666555666666665554
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.62 E-value=24 Score=35.23 Aligned_cols=122 Identities=12% Similarity=-0.041 Sum_probs=78.7
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhh---------------cCch-----
Q 008804 390 ADATRVSVVIGV-FKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKIL---------------GGFP----- 448 (553)
Q Consensus 390 ~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~----- 448 (553)
+...++-....+ ++++..++..++.++..+.++..+........++++++..... ...+
T Consensus 61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~ 140 (509)
T COG3202 61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW 140 (509)
T ss_pred hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence 444555555545 6677888888999999998887766665555555555443210 0011
Q ss_pred -------HHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHh
Q 008804 449 -------LVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEL 511 (553)
Q Consensus 449 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 511 (553)
|.......+.-........-+.+....|....++..+-+++.+...+++..+++.+..++..+
T Consensus 141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222222222222222335678889999999999999999999999999999888887753
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.15 Score=48.27 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHH--HHHHHHHHHHHH----------hcchHHHHHHHHHHHHHHhhhh
Q 008804 141 LVVSGSLYGALLGSILVYSIADF-LGRKRELIIA--AVLYALGALTTA----------YAPGLGVLLVGRLLYGLGIGLA 207 (553)
Q Consensus 141 ~~~s~~~~~~~i~~~~~G~l~dr-~Grk~~~~~~--~~~~~i~~~~~~----------~~~~~~~l~~~r~l~G~~~g~~ 207 (553)
.+...|.++-.+|..+.++.-=+ -.+|++++.+ =+++.-..++|. +.+|-+.+++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667788888888877653211 0244444321 122222222331 2345677888899999999999
Q ss_pred hhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhc
Q 008804 208 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 248 (553)
Q Consensus 208 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~ 248 (553)
......+..+..++++|..+-.+......+|..+|..++-.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888777644
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.38 E-value=9 Score=36.05 Aligned_cols=116 Identities=22% Similarity=0.122 Sum_probs=71.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHH---HHHHHHHHHh--cchHHHHHHHHHHHHH
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI----IAAVL---YALGALTTAY--APGLGVLLVGRLLYGL 202 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~----~~~~~---~~i~~~~~~~--~~~~~~l~~~r~l~G~ 202 (553)
+|-+-.|.+++.+.|.++..+|+...-++.|---.-+.+. +|++. ..+..+.+++ .++-+.++++-++.|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 4556778899999999999999999888887543332222 22221 1122222222 3467788899999999
Q ss_pred HhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcc
Q 008804 203 GIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 249 (553)
Q Consensus 203 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l 249 (553)
-.|.-.|..+.++..... +-....+.....-.+|...+.++-.++
T Consensus 118 LVG~EiPL~mrml~~r~a--~~k~~~s~vl~~DYLGal~~gLl~p~l 162 (508)
T COG4262 118 LVGAEIPLLMRMLQRRQA--KAKDLGSRVLTLDYLGALAGGLLWPFL 162 (508)
T ss_pred HHhcchHHHHHHHHHHHH--HHHhhhhhhhhhHhhhhhhHHHHHHHH
Confidence 999999999988876221 111122222333556666655554443
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.00 E-value=11 Score=36.03 Aligned_cols=155 Identities=14% Similarity=0.025 Sum_probs=77.1
Q ss_pred HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHH-----HHHHHHHHHHHHhh---
Q 008804 373 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGI-----ALSLLLLSAYYKIL--- 444 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~--- 444 (553)
..+-...++...+.++.........+-+...++...+.|...|+..|+|.+.....+- ..+.+++..+. ..
T Consensus 46 W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~-~~~~~ 124 (503)
T KOG2601|consen 46 WEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLV-HKDLK 124 (503)
T ss_pred HHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhhee-ecchh
Confidence 3344445566666655456666666667777777778888889999988765443321 11111111111 11
Q ss_pred -cCchHHHHHHHHHHHHHHhcCcc-cch--------hh-hhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC
Q 008804 445 -GGFPLVAVSALLLYVGCYQISFG-PIS--------WL-MVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG 513 (553)
Q Consensus 445 -~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~-~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 513 (553)
...++ ...+..+.......+.. ... |. .++|--++.......+.....-..-..+.|.+.|.+....+
T Consensus 125 ~~t~pv-~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvs 203 (503)
T KOG2601|consen 125 SATSPV-FTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVS 203 (503)
T ss_pred cccccH-HHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeec
Confidence 12222 22222222111111110 000 01 11122222222223344444555667889999999998887
Q ss_pred chhHHHHHHHHHHHHH
Q 008804 514 AENIFLLFAAIAFLAV 529 (553)
Q Consensus 514 ~~~~~~~~~~~~~~~~ 529 (553)
.+..-.++++-.++..
T Consensus 204 l~~~~g~f~~w~~vsm 219 (503)
T KOG2601|consen 204 LRASAGTFAAWALVSM 219 (503)
T ss_pred hhhhhhhhHHHHHHHH
Confidence 7665555555555433
|
|
| >PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [] | Back alignment and domain information |
|---|
Probab=86.20 E-value=31 Score=32.68 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHhhhchhhh
Q 008804 93 VILPFLFPALGGLLFGYDIGA 113 (553)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~ 113 (553)
.+...+..++=.+..|+..+.
T Consensus 173 ~~~l~~~~~~Hs~~eGl~ig~ 193 (317)
T PF02535_consen 173 ALILLIALSIHSFFEGLAIGA 193 (317)
T ss_pred HHHHHHHHHhhcchhhhhhhc
Confidence 455455555666777766544
|
; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane |
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=85.50 E-value=25 Score=30.94 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=18.5
Q ss_pred HHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHH
Q 008804 227 LISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPL 266 (553)
Q Consensus 227 ~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~ 266 (553)
.-.......-++..+|..+++.+.... +. +..++.+++
T Consensus 163 ~~~~~~~~~i~~f~~Ga~~ga~l~~~~-~~-~al~~~~~~ 200 (209)
T PF06912_consen 163 RRALRYLLIILSFFIGAILGALLYRRL-GF-WALLLPALL 200 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-HHHHHHHHH
Confidence 333444445555566666666655444 54 333333333
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.10 E-value=41 Score=30.16 Aligned_cols=33 Identities=6% Similarity=-0.099 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhcccCCchhhHhHHHHHHHH
Q 008804 401 VFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALS 433 (553)
Q Consensus 401 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 433 (553)
+|..++.+.+-+++.|+..|++.+++.+++.+.
T Consensus 251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 251 LCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 444444444456788888888877766554443
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.01 E-value=5.5 Score=29.85 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHH
Q 008804 139 LGLVVSGSLYGALLGSILVYSIADFL-GRKRELII 172 (553)
Q Consensus 139 ~g~~~s~~~~~~~i~~~~~G~l~dr~-Grk~~~~~ 172 (553)
.+.-.+.=+++..+.....||+.||| |.++..++
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~agTsPwglI 78 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLI 78 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455566677777788889999997 44444333
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.00 E-value=23 Score=32.02 Aligned_cols=102 Identities=13% Similarity=0.066 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHH----HHHHHHHHHHHHHHh-c----chHHHHHHHHHHHHHHhhhhh
Q 008804 139 LGLVVSGSLYGALLGSILVYSIAD-FLGRKRELI----IAAVLYALGALTTAY-A----PGLGVLLVGRLLYGLGIGLAM 208 (553)
Q Consensus 139 ~g~~~s~~~~~~~i~~~~~G~l~d-r~Grk~~~~----~~~~~~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~ 208 (553)
.....-++..|+.+|.+..|.... ++.||+.+. .+.+++.+..++... . .++..+++.-|+.|++.=+..
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555667777777788888777 445666554 344455554444312 1 146667778888887654444
Q ss_pred hhhhhHhhhccccccchhHHhHHHHHHHHHHHH
Q 008804 209 HGAPLYIAETCPSQIRGTLISLKELFIVLGILL 241 (553)
Q Consensus 209 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~ 241 (553)
++...+=-|+ +...+.+.--.++..+++|.++
T Consensus 223 ~ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 223 GVILNLPHEY-KGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHHhcChhhh-cCCCcceehhHHHHHHHHHHHH
Confidence 4444333333 2222333333334445555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 553 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-27 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 6/156 (3%)
Query: 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLG 191
N+ + V+ L + + I+D +GR+ +++ ++ L L L
Sbjct: 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89
Query: 192 VLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQIN 251
VL+ + G+G G+ A + SL + I++ LL +G ++
Sbjct: 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG-LLD 148
Query: 252 AVGGWRYMYGLSAPLALLMGIGMW-----SLPPSPR 282
+ WR Y L + M + P
Sbjct: 149 TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP 184
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 65/447 (14%), Positives = 137/447 (30%), Gaps = 52/447 (11%)
Query: 102 LGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIA 161
G+ FGY +L P L S LG +SG ++ S++
Sbjct: 30 FLGIFFGYAAYYLVRKNFALAMPYLV---EQGFSRGDLGFALSGISIAYGFSKFIMGSVS 86
Query: 162 DFLGRKRELIIAAVLYALGALTTAYAPG----LGVLLVGRLLYGLGIGLAMHGAPLYIAE 217
D + L +L A L + P + V+ V L G G+ +
Sbjct: 87 DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 146
Query: 218 TCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 277
+ RG ++S+ +G + + + W + A A+L+ + +++
Sbjct: 147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 206
Query: 278 PPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 337
+ + + + + P D + + E T
Sbjct: 207 MRDTP----------------QSCGLPPIEEYKNDYPDDYNEKAEQELT----------- 239
Query: 338 KSEGSFLEVFQGPNLKAFIIG---GGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATR 394
+ V L I L+ + + P+ L + F+ ++
Sbjct: 240 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK------EVKHFA-LDKSSW 292
Query: 395 VSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSA 454
+ + T + D + R GV + L + Y+ G P V +
Sbjct: 293 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 352
Query: 455 LLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSN---AIVT-FAFSPLKE 510
+++ +G + L E+ P + G + A T ++ +
Sbjct: 353 MIV-IGFLIYGPVMLIGLHALELAPKKAAG---TAAGFTGLFGYLGGSVAASAIVGYTVD 408
Query: 511 LLGAENIFLLFAAIAFLAVLFIVRTVP 537
G + F++ + LAV+ ++ +
Sbjct: 409 FFGWDGGFMVMIGGSILAVILLIVVMI 435
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 48/428 (11%), Positives = 121/428 (28%), Gaps = 64/428 (14%)
Query: 134 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELI----IAAVLYALGALTTAYAPG 189
+S G++ + +LL L ++D LG ++ L+ V++A +
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 190 LGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKE--LFIVLGILLGYFVGS 247
+LVG ++ G+ +G + + R + +F +G LG +
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159
Query: 248 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 307
+ + G AL++ + ++ A + + + L
Sbjct: 160 IMFTINNQFVFWLGSGC--ALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELF 217
Query: 308 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 367
+ + + G+ +
Sbjct: 218 RQPKL---------------------------------------WFLSLYVIGVSCTYDV 238
Query: 368 TGQPSVLYYAGPILQSAGFSAAA--DATRVSVV--IGVFKLVMTWIAVAKVDDLGRRPLL 423
Q ++ + T + + + I ++ +G + L
Sbjct: 239 FDQQFANFFT-SFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLI----INRIGGKNAL 292
Query: 424 IGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 483
+ +++ ++ S L V L++ + ++ F +R
Sbjct: 293 LLAGTIMSVRIIGSS-----FATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFS 346
Query: 484 GRGISLAVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 542
+ + ++ + E +G + +L+ +A L V T+ L
Sbjct: 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406
Query: 543 SLEEIESK 550
SL +
Sbjct: 407 SLLRRQVN 414
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 66/418 (15%), Positives = 118/418 (28%), Gaps = 64/418 (15%)
Query: 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALT---TAYAP 188
F L+ Q GL+ S +G + I + L K +I LYALGA A
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115
Query: 189 GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSF 248
+ LVG + G+G A ++ P ++L + F G ++ G
Sbjct: 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175
Query: 249 QI------NAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQA 302
I + M + P ++++ A+
Sbjct: 176 LILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP----YMIIVAI------------- 218
Query: 303 ISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLV 362
+ + L L D S + + + + ++
Sbjct: 219 VLLVALLIMLTKFPALQSDNHSDA--------KQGSFSASLSRLARIRHWRWAVLAQFCY 270
Query: 363 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPL 422
+ Q ++ YA + AA+ ++V +++ + L
Sbjct: 271 VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP--HKVL 328
Query: 423 LIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT 482
+ +AL L+ V + AL L I IF L
Sbjct: 329 AAYALIAMALCLI-------SAFAGGHVGLIALTLCSAFMSI--------QYPTIFSLGI 373
Query: 483 RGRGISLAVLTNFGS---------NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLF 531
+ G T +GS IVT + + G L A+ F +
Sbjct: 374 KNLG----QDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.5 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.47 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.42 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.41 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.4 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.35 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.1 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-46 Score=376.17 Aligned_cols=444 Identities=33% Similarity=0.574 Sum_probs=346.6
Q ss_pred ccchhhhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCC-cccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008804 87 AFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSG-TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG 165 (553)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G 165 (553)
+++.+..+.+.++++++.+++|||.++++..++.+..+.... +...+.+..+.|++.+++.+|..+|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556677777788999999999999998888766431111 0002445678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------------hcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhH
Q 008804 166 RKRELIIAAVLYALGALTTA------------------YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL 227 (553)
Q Consensus 166 rk~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 227 (553)
||++++++.+++.+++++++ +++|+++++++|+++|++.|+..+...+++.|+.|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999998 478999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhhcccCCC-------CchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHH
Q 008804 228 ISLKELFIVLGILLGYFVGSFQINAV-------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKE 300 (553)
Q Consensus 228 ~~~~~~~~~lG~~~g~~l~~~l~~~~-------~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~ 300 (553)
.++.+.+..+|.++++.++..+.... .+||+.+.+..++.++..+..+++||+|+|+..+ ++.+
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~---------~~~~ 234 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSR---------GKQE 234 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHT---------TCHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHc---------Cchh
Confidence 99999999999999998877654321 2699999999999999999999999999999874 5556
Q ss_pred HHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHH
Q 008804 301 QAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 380 (553)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (553)
++.+.+++.+..+..++ +..+..+.. .++++.......++ .++..+......+.+..+.+.+.+|.+.+
T Consensus 235 ~a~~~l~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQ----AVQEIKHSL----DHGRKTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhHHHhcCCchhHH----HHHHHHHHH----HhhhhhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 66666665543211111 000100000 00111111111222 23445555666777788888899999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 008804 381 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVG 460 (553)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (553)
.+..+... ..........++..+++.++++++.||+|||+.+..+.....++++.+...... ....+..+...+++..
T Consensus 304 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 381 (491)
T 4gc0_A 304 FKTLGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVA 381 (491)
T ss_dssp HHHSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHhcCCCc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHH
Confidence 98888776 667777788889999999999999999999999999888888877776654432 2334444555556666
Q ss_pred HHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH------hhCchhHHHHHHHHHHHHHHHHHH
Q 008804 461 CYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE------LLGAENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~ 534 (553)
++..+..++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.++
T Consensus 382 ~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~ 461 (491)
T 4gc0_A 382 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 461 (491)
T ss_dssp HHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 67777888888999999999999999999999999999999988876643 345667888999999999999999
Q ss_pred hcccCCCCCHHHHHhhhh
Q 008804 535 TVPETKGLSLEEIESKIL 552 (553)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~ 552 (553)
++||||+|++||+|+.++
T Consensus 462 ~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 462 FVPETKGKTLEELEALWE 479 (491)
T ss_dssp HCCCCTTCCHHHHGGGTC
T ss_pred eecCCCCCCHHHHHHHhC
Confidence 999999999999987665
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-40 Score=329.08 Aligned_cols=397 Identities=14% Similarity=0.086 Sum_probs=299.8
Q ss_pred HHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 008804 94 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 173 (553)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~ 173 (553)
+..+...+++.+..+++...+.+.++.+.++ + .+..+.|++.+++.++..++.+++|+++||+|||++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 3344556666777788888888888888776 8 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcc
Q 008804 174 AVLYALGALTTAY----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 249 (553)
Q Consensus 174 ~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l 249 (553)
.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCc-hHHHHhhhHHHHHHHHHH-hcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHH
Q 008804 250 INAVGG-WRYMYGLSAPLALLMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL 327 (553)
Q Consensus 250 ~~~~~~-wr~~f~~~~~~~~~~~i~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (553)
.+.. + ||+.|++.++++++..++ .+++||+|+....++.++ .++ + .+.+.++
T Consensus 179 ~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------~--~~~~~~~-- 232 (451)
T 1pw4_A 179 MAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE---YKN------------------D--YPDDYNE-- 232 (451)
T ss_dssp HHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT---TCC------------------C-----------
T ss_pred HHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh---hcc------------------c--ccccchh--
Confidence 7766 7 999999999888876654 466888775321100000 000 0 0000000
Q ss_pred HHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHH
Q 008804 328 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVM 406 (553)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 406 (553)
+++.+...++...+++++++.++...+..++..+.. ..+..+.|.++++ .+.+. .+.+.......++.+++
T Consensus 233 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 304 (451)
T 1pw4_A 233 ---KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPG 304 (451)
T ss_dssp ---------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHH
T ss_pred ---hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHH
Confidence 000001111111356677777666655444444333 3477788888887 56666 78899999999999999
Q ss_pred HHHHHHhhccc--CCchhhHhHHHHHH-HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccch
Q 008804 407 TWIAVAKVDDL--GRRPLLIGGVCGIA-LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 483 (553)
Q Consensus 407 ~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 483 (553)
.++.+++.||+ ++|+.+..+..+.. ++.+++.. .............+..+.+.....+....+..|.+|++.|
T Consensus 305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM----NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 380 (451)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS----CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhh
Confidence 99999999999 99988877666555 44333321 1111333333333444444444455556889999999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhc
Q 008804 484 GRGISLAVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV 536 (553)
Q Consensus 484 ~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 536 (553)
+++.|+.+.+..+ |..++|.+.|.+.+..|+...|++.+++.+++.++.++..
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999998888887777655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=311.87 Aligned_cols=365 Identities=16% Similarity=0.114 Sum_probs=285.8
Q ss_pred HHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 008804 98 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 177 (553)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~ 177 (553)
+++++..+..+++....++.++.+.++ +|++..+.|++.+++.+++.++.+++|+++||+|||++++++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 344555677777777888888887766 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhccc-CCC
Q 008804 178 ALGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-NAV 253 (553)
Q Consensus 178 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~-~~~ 253 (553)
+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 889999999999999999999999999999999999999999999999999999999999999988 554
Q ss_pred Cc------------------------hHHHHhhhHHHHHHHHHHhcc--cCCchhHHHHhhccCCCchhhhHHHHHHHHH
Q 008804 254 GG------------------------WRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALG 307 (553)
Q Consensus 254 ~~------------------------wr~~f~~~~~~~~~~~i~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (553)
+. ||+.|++.+++.++..++.++ .||+++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------------------- 238 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN----------------------- 238 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC-----------------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc-----------------------
Confidence 23 999998888777766554433 34443200
Q ss_pred hHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHH-HHHc-C
Q 008804 308 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSA-G 385 (553)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 385 (553)
++ +.+++..+.+++++++++.++...+..++..... .....+.|.+ +++. +
T Consensus 239 ----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g 291 (438)
T 3o7q_A 239 ----HS-------------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPG 291 (438)
T ss_dssp ----CC-------------------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTT
T ss_pred ----cc-------------------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCC
Confidence 00 0001112234566788888777666555544433 3466788888 7776 6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcC
Q 008804 386 FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQIS 465 (553)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (553)
.+. .+++.......++.+++.++.+++.||++||+.+..+.++..++.+++.. .......+.. +..+++...
T Consensus 292 ~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~g~~~~~ 363 (438)
T 3o7q_A 292 MTA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF------AGGHVGLIAL-TLCSAFMSI 363 (438)
T ss_dssp CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHH-HHHHHHHTT
T ss_pred cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH------cCCcHHHHHH-HHHHHHHHH
Confidence 665 78899999999999999999999999999999998888777776655543 1222223333 333344445
Q ss_pred cccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC-chhHHHHHHHHHHHHH
Q 008804 466 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAV 529 (553)
Q Consensus 466 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 529 (553)
..+..+.+..|.+|++ ++.+.++.. ...+|+.++|.+.|.+.+..| +...|++.+++.++..
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 5667778888998966 888888877 677999999999999999999 8888887655544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=285.55 Aligned_cols=400 Identities=13% Similarity=0.056 Sum_probs=260.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
+|.+..+.+++.+++.++..++++++|+++|| +|||++++.+.++.+++.++++++++++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcccccc--chhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhh
Q 008804 211 APLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 288 (553)
Q Consensus 211 ~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~ 288 (553)
..+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++..+ ++...++
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~--~~~~~~~ 205 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGK--KTLDPHY 205 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHH--TTCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCc--ccccccc
Confidence 9999999999988 777888899999999999999999988877 9999999988877776655443211 1100000
Q ss_pred ccCCCchhhhHHHHHHHHHh----------------HhcCCCCCchhHHHHHHHH-HH-hhhccccccccccceeccccc
Q 008804 289 VQGKGSLQEYKEQAISALGK----------------LRRRPPGDKLSERQIEDTL-VS-LKSSYTDEKSEGSFLEVFQGP 350 (553)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 350 (553)
.+.+.+.+.++.++..+. ..+..+.++.......... .. .......+.+.....+..+..
T Consensus 206 --~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (491)
T 4aps_A 206 --LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVV 283 (491)
T ss_dssp --SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CT
T ss_pred --cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 001111112222221111 1111111111100000000 00 000000000000001111111
Q ss_pred chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHc-CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhH-----
Q 008804 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI----- 424 (553)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~----- 424 (553)
......+...+.+... .....+.+.+.++. +.+. ...+.......++.+++.++.+++.||++||+...
T Consensus 284 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSW-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA 358 (491)
T ss_dssp THHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSS-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCc-cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence 2222232222222222 23455666666663 4432 56777778888889999999999999999987655
Q ss_pred hHHHHHHHHHHHHHHHHHhh---cCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHH
Q 008804 425 GGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 501 (553)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 501 (553)
.+..+.+++++++....... ............++.+.......+..+.+..|.+|++.|+++.|+.+....+|..++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~ 438 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655554432110 112333333444444555555566777899999999999999999999999999999
Q ss_pred HHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008804 502 TFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 542 (553)
Q Consensus 502 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (553)
+.+.+.+.+ .++...|.+.+++.+++.++.+++.++.+++
T Consensus 439 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 439 AQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988766 4677788888888888777777666655544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=282.44 Aligned_cols=356 Identities=13% Similarity=0.072 Sum_probs=271.8
Q ss_pred HHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 008804 99 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 178 (553)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~ 178 (553)
++++..++.+++.....+.++.+.++ +|.+..+.+++.+++.++..++.+++|+++||+|||++++.+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 34555667777777888888887766 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHH
Q 008804 179 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 258 (553)
Q Consensus 179 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~ 258 (553)
++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.+.. +||+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~ 155 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988877 8999
Q ss_pred HHhhhHHHHHHHHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccc
Q 008804 259 MYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 337 (553)
Q Consensus 259 ~f~~~~~~~~~~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (553)
.|++.+++.++..+ ..+++||+++.. .+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~ 186 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETRPVD-------------------------------------------------APRT 186 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCSTTT-------------------------------------------------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCCC-------------------------------------------------cccc
Confidence 99999988888776 446677765410 0011
Q ss_pred cccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008804 338 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 416 (553)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 416 (553)
+.+.++++++|+|.++...+...+..... ..+..+.|.++++ .+.+. .+.+.......++.+++.++.+++.||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r 261 (375)
T 2gfp_A 187 RLLTSYKTLFGNSGFNCYLLMLIGGLAGI----AAFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKR 261 (375)
T ss_dssp CTTTCSTHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHTTTTH
T ss_pred cHHHHHHHHhcCcchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334567778877776665544444333 2355666666655 56555 778889999999999999999999999
Q ss_pred cCCchhhHhHHHH-HHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHH
Q 008804 417 LGRRPLLIGGVCG-IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF 495 (553)
Q Consensus 417 ~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 495 (553)
.+++ ...+..+ ...+...+.... ....+.+...... +..+.......+....+..|..| ++|+++.|+.+....
T Consensus 262 ~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~ 336 (375)
T 2gfp_A 262 FSTL--MWQSVICCLLAGLLMWIPDW-FGVMNVWTLLVPA-ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQN 336 (375)
T ss_dssp HHHH--HHHHHHHHHHTSSSSSHHHH-HHHHHHHHHHHHH-HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHhh-hccccHHHHHHHH-HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHH
Confidence 8872 2222222 222222111111 0011222222233 33333334455666788999988 899999999999999
Q ss_pred HHHHHHHHHhHHhHHhhCchhHHHHH
Q 008804 496 GSNAIVTFAFSPLKELLGAENIFLLF 521 (553)
Q Consensus 496 ~g~~~~~~~~g~l~~~~g~~~~~~~~ 521 (553)
+|..++|.+.|.+.+..++...+.+.
T Consensus 337 ~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 337 IGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999998877766555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-31 Score=260.34 Aligned_cols=360 Identities=14% Similarity=0.089 Sum_probs=234.1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH---HHHHhcchH-HHHHHHHHHHHHHhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA---LTTAYAPGL-GVLLVGRLLYGLGIGLA 207 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~---~~~~~~~~~-~~l~~~r~l~G~~~g~~ 207 (553)
+|.+..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ..+.+.+.. ..++..+++.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999888776532 222333222 12345566666655555
Q ss_pred hhhhhhHhhhcccc--ccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHH
Q 008804 208 MHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL 285 (553)
Q Consensus 208 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~ 285 (553)
.+.....+.++.++ ++|+...+.......+|..++|.+++++.+ . +||+.|++.+++.++..+..++.+|+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-- 193 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-I-NNQFVFWLGSGCALILAVLLFFAKTDAPS-- 193 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-H-CSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence 54445555555543 356777777777888999999999998876 3 79999999888766665555555443310
Q ss_pred HhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHH
Q 008804 286 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 365 (553)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (553)
+.+.++ ..+ ..+++....+++++++++.++...+........
T Consensus 194 ------~~~~~~--------------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 194 ------SATVAN--------------AVG------------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp ------SSCSSS--------------SSS------------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------cccccc--------------ccc------------------cccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 000000 000 000000111234567777666554432222221
Q ss_pred HhhChhhHHHhHHHHHHHcCCC---CchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHH
Q 008804 366 QITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 442 (553)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 442 (553)
. .....+.|.++.+.... .....+.......++.+++.++.+++.||+|||+.+..+..+.+++.+.+..
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--- 308 (417)
T 2cfq_A 236 Y----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--- 308 (417)
T ss_dssp H----HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred H----HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---
Confidence 1 12334466666543211 1134566777777888899999999999999999988777666665444322
Q ss_pred hhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHH-HHHHHHHHHHHHHHhHHhHHhhCchhHHHHH
Q 008804 443 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLGAENIFLLF 521 (553)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 521 (553)
..+.+..++.. +..+.......+..+.+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...|.+.
T Consensus 309 --~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 309 --ATSALEVVILK-TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp --CCSHHHHHHHT-THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred --hccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 12222222222 2222222222334467899999999999999994 7888999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHhcccCCCCC
Q 008804 522 AAIAFLAVLFIVRTVPETKGLS 543 (553)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~ 543 (553)
+++.+++.++.+...+|+++.+
T Consensus 386 ~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 386 GLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHhhhcCCCchH
Confidence 8888888776666666655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=249.85 Aligned_cols=402 Identities=10% Similarity=0.046 Sum_probs=226.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHhhhhhhhh
Q 008804 134 LSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 134 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
.+..+.|++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhHhhhccccccchhHHhH---HHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhh
Q 008804 212 PLYIAETCPSQIRGTLISL---KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 288 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~---~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~ 288 (553)
.+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+.. +||+.|++.+++.++..+..++.++..+.
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~----- 204 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWLGRKRYIH----- 204 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHSSSSSCCC-----
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 9999999999999877666 89999999999999999988777 89999999988877766655433221100
Q ss_pred ccCCCchhhhHHHHHHHH-HhHhcCCCCCchhHHHHHHH----------------------------HHHhh--hcc---
Q 008804 289 VQGKGSLQEYKEQAISAL-GKLRRRPPGDKLSERQIEDT----------------------------LVSLK--SSY--- 334 (553)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~--~~~--- 334 (553)
.+.+ +++..+..+.. ...+.... +.......... ..+.+ ...
T Consensus 205 --~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (524)
T 2xut_A 205 --MPPE-PKDPHGFLPVIRSALLTKVE-GKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280 (524)
T ss_dssp --CC---------------------CT-THHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHH
T ss_pred --cCCC-CccchhHHHHHHHHHhhhhc-ccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHH
Confidence 0000 00000000000 00000000 00000000000 00000 000
Q ss_pred ccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 008804 335 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKV 414 (553)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 414 (553)
+...+..+..+..+.+....... ..+........+.....+.+.+..+.+.+.....+.+.....++.+++.++.+++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (524)
T 2xut_A 281 ERARKSHPDAAVDGVRSVLRILV-LFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVL 359 (524)
T ss_dssp HHSCCSCCSSSSTTTTTHHHHHH-HHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-
T ss_pred hhhhccccHhHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhh
Confidence 00000000001111111111111 11111111111111222223333333221101344444444445555555554443
Q ss_pred ----cccCC----chhhHhHHHHHHHHHHHHHHHHHhh---cCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccch
Q 008804 415 ----DDLGR----RPLLIGGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 483 (553)
Q Consensus 415 ----d~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 483 (553)
+|.++ ++.+.++.++.+++++++....... .......++...++.+.+.....+..+.+..|..|++.|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 360 YPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp -----------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 44332 2344555555555554443211000 011222333334444444445566677889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhHHhh----------Cc-hhHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 008804 484 GRGISLAVLTNFGSNAIVTFAFSPLKELL----------GA-ENIFLLFAAIAFLAVLFIVRTVPETKGLSLEE 546 (553)
Q Consensus 484 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (553)
++++|+.++...+|+.++|.+.|.+.+.. +. ...|++.+++.+++.++.+++.++.++++.++
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 99999999999999999999999987632 21 22366677777777666666666655544433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-13 Score=134.09 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=130.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHH-HHHHHHHhc--chHHHHHHHHHHHHHHhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL--GRKRELIIAAVLYA-LGALTTAYA--PGLGVLLVGRLLYGLGIGL 206 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grk~~~~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 206 (553)
+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+++..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999 99999988887777 666666665 3778888888999999999
Q ss_pred hhhhhhhHhhhccccccchhHHhHHHHHHHH-HHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhccc
Q 008804 207 AMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 277 (553)
Q Consensus 207 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~ 277 (553)
..+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.. ||+..|++.+++.++..++.+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 9998999999999999999999999999999 9999999999998887 89999999998888877766544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.9e-13 Score=131.79 Aligned_cols=170 Identities=14% Similarity=0.034 Sum_probs=130.1
Q ss_pred HHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHH
Q 008804 361 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 440 (553)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 440 (553)
+.++.............|.+.++.+.+. .+.+++.....++..++.++.|+++||+|||+.+..+.++.+++.++....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 111 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA 111 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence 3333333334467777888888899887 899999999999999999999999999999999999999888888777332
Q ss_pred HHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhH-HhhC------
Q 008804 441 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-ELLG------ 513 (553)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g------ 513 (553)
.. ......+....++.+.+.....+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 112 ~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 112 AE---IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred cc---cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 11 2233444444455555555556667799999999999999999999999999999999999998 5444
Q ss_pred -------------------chhHHHHHHHHHHHHHHHHHH
Q 008804 514 -------------------AENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 514 -------------------~~~~~~~~~~~~~~~~~~~~~ 534 (553)
|++.|++.+++.++..++.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677887777666655554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=127.95 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=126.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhh
Q 008804 134 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL 213 (553)
Q Consensus 134 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 213 (553)
.+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999888888888888888888888889888777777889
Q ss_pred HhhhccccccchhHHhH-HHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCCch
Q 008804 214 YIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSP 281 (553)
Q Consensus 214 ~i~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p 281 (553)
++.|.+|++.|+++.++ ++....+|..++|.+++.+.+.. +++..|++.++++++..++. ++.+|.+
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999998 47888899999999999988766 89999999888888877654 4455544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=131.39 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=122.8
Q ss_pred hHHHhHHHHHHH------cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhhHhHHHHHHHHHHHHHHHHHhh
Q 008804 372 SVLYYAGPILQS------AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL 444 (553)
Q Consensus 372 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (553)
....+.+.++++ .+.+. .+.++......++..++.++.|+++|| +|||+.+..+.++..++.+++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----- 104 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhccchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----
Confidence 455556666655 67766 889999999999999999999999999 89999999998888887776653
Q ss_pred cCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccc--hhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHH
Q 008804 445 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFA 522 (553)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 522 (553)
..+...+....++.+.+.....+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+..||++.|++.+
T Consensus 105 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 105 -PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp -CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2223333333444444444556677789999999988 7788888999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHh
Q 008804 523 AIAFLAVLFIVRT 535 (553)
Q Consensus 523 ~~~~~~~~~~~~~ 535 (553)
+..+++.++.++.
T Consensus 184 ~~~~~~~~~~~~~ 196 (491)
T 4aps_A 184 IGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777666655444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-13 Score=129.77 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=131.3
Q ss_pred hhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchH
Q 008804 370 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 449 (553)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (553)
........|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+..... .+.
T Consensus 16 ~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH------HHH
T ss_pred HHHHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------ccH
Confidence 3345566777788888877 789999999999999999999999999999999999988888887776653 133
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHH
Q 008804 450 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV 529 (553)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 529 (553)
..+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|++.+++.++..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33444444455555555667778999999999999999999999999999999999999998899999988887777666
Q ss_pred HHHHHhcccCC
Q 008804 530 LFIVRTVPETK 540 (553)
Q Consensus 530 ~~~~~~~~~~~ 540 (553)
++.++..||++
T Consensus 169 ~~~~~~~~~~~ 179 (375)
T 2gfp_A 169 FSMARWMPETR 179 (375)
T ss_dssp CCCCCSSCCCS
T ss_pred HHHHHHCcccC
Confidence 64555566543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-11 Score=122.10 Aligned_cols=157 Identities=12% Similarity=0.077 Sum_probs=120.8
Q ss_pred hHHHhHHHHHH-HcC------CCCchhhHHHHHHHHHHHHHHHHHHHHhhccc-CCchhhHhHHHHHHHHHHHHHHHHHh
Q 008804 372 SVLYYAGPILQ-SAG------FSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKI 443 (553)
Q Consensus 372 ~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (553)
....+++.++. +.+ .+. .+.+++.....++..++.++.|+++||+ |||+.+.++.++.+++.+++...
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--- 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--- 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---
Confidence 35556666654 456 666 7899999999999999999999999999 99999998888888777766541
Q ss_pred hcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHH---HHHHHHHHHHHHHHHhHHhHHhhCchhHHHH
Q 008804 444 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL---AVLTNFGSNAIVTFAFSPLKELLGAENIFLL 520 (553)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 520 (553)
......+....++.+.......+...+++.|.+|+++|+++.+. .+....+|..++|.+.+.+.+..||+..|++
T Consensus 106 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 106 --EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp --SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 21333333444444555556667777999999999999776666 8888999999999999999998999999998
Q ss_pred HHHHHHHHHHHHHH
Q 008804 521 FAAIAFLAVLFIVR 534 (553)
Q Consensus 521 ~~~~~~~~~~~~~~ 534 (553)
.+++.+++.++.++
T Consensus 184 ~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 184 PGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH
Confidence 88777666554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-10 Score=114.11 Aligned_cols=151 Identities=18% Similarity=0.064 Sum_probs=110.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-----PGLGVLLVGRLLYGLGIGL 206 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~ 206 (553)
.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+.. ++...++..-+..+.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 45566677777778888999999999999999999999999988888777665542 2222222222222222233
Q ss_pred hhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCC-----CchHHHHhhhHHHHHHHHHH-hcccCCc
Q 008804 207 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGIG-MWSLPPS 280 (553)
Q Consensus 207 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~-----~~wr~~f~~~~~~~~~~~i~-~~~~~e~ 280 (553)
..+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+.. .++.+.|++.++++++..+. ++++|||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 45667789999999999999999999999999999888776654321 14556788888888877664 4778998
Q ss_pred hh
Q 008804 281 PR 282 (553)
Q Consensus 281 p~ 282 (553)
..
T Consensus 467 kg 468 (491)
T 4gc0_A 467 KG 468 (491)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 553 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-21 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 9e-10 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 95.1 bits (235), Expect = 1e-21
Identities = 62/454 (13%), Positives = 129/454 (28%), Gaps = 40/454 (8%)
Query: 101 ALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSI 160
G+ FGY +L P L S LG +SG ++ S+
Sbjct: 26 IFLGIFFGYAAYYLVRKNFALAMPYLVE---QGFSRGDLGFALSGISIAYGFSKFIMGSV 82
Query: 161 ADFLGRKRELIIAAVLYALGALT----TAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIA 216
+D + L +L A L + V+ V L G G+ +
Sbjct: 83 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142
Query: 217 ETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 276
+ RG ++S+ +G + + + W + A A+L+ + ++
Sbjct: 143 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202
Query: 277 LPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTD 336
+ + + A +L +
Sbjct: 203 MMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI---------------------- 240
Query: 337 EKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVS 396
V L I + +L ++ L+ A ++
Sbjct: 241 -----FMQYVLPNKLLWYIAIAN----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY 291
Query: 397 VVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALL 456
+ + T + D + R GV + L + Y+ G P V + +
Sbjct: 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM-ICM 350
Query: 457 LYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLT-NFGSNAIVTFAFSPLKELLGAE 515
+ +G + L E+ P + G L G + + + G +
Sbjct: 351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 410
Query: 516 NIFLLFAAIAFLAVLFIVRTVPETKGLSLEEIES 549
F++ + LAV+ ++ + K + ++
Sbjct: 411 GGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 58.6 bits (140), Expect = 9e-10
Identities = 49/422 (11%), Positives = 115/422 (27%), Gaps = 52/422 (12%)
Query: 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA----AVLYALGALTTAYA 187
++S G++ + +LL L ++D LG ++ L+ V++A +
Sbjct: 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97
Query: 188 PGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGS 247
+LVG ++ G+ +G + + R + + +
Sbjct: 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASI 157
Query: 248 FQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALG 307
I ++++ L + AL++ + ++ A +
Sbjct: 158 VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA---------- 207
Query: 308 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQI 367
S LE+F+ P L + V
Sbjct: 208 ------------------------------FSLKLALELFRQPKLWFLSLYVIGVSCTYD 237
Query: 368 TGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGV 427
+ + ++ + +M + + G+ LL+ G
Sbjct: 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT 297
Query: 428 CGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGI 487
+ A + V L + ++ F +R
Sbjct: 298 IMSVRIIGSSFATS-------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY 350
Query: 488 SLAVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGLSLEE 546
+ + ++ + E +G + +L+ +A L V T+ LSL
Sbjct: 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410
Query: 547 IE 548
+
Sbjct: 411 RQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.54 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.42 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-39 Score=320.47 Aligned_cols=405 Identities=14% Similarity=0.071 Sum_probs=287.0
Q ss_pred HHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 008804 94 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 173 (553)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~ 173 (553)
|.++..+.++.+...++...++...|.+. + +|+|.+|+|++.+++.++++++++++|+++||+|||+++.++
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~-------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 95 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-E-------QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 95 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-S-------STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 33344555666666666666666666553 3 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcc
Q 008804 174 AVLYALGALTTAYAP----GLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 249 (553)
Q Consensus 174 ~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l 249 (553)
.++.+++.+++++++ +++.++++|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 999999999998764 7889999999999999999999999999999999999999999999999999999998887
Q ss_pred cCCCCchHHHHhhhHHHHHHHHHHh-cccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHH
Q 008804 250 INAVGGWRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 328 (553)
Q Consensus 250 ~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (553)
.....+||+.|++.+++.++..++. ++++++|+....... ++.+....++..
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~---- 228 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-----------------------EEYKNDYPDDYN---- 228 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-----------------------TTTCCC----------
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh-----------------------hhhhhhcccchh----
Confidence 7665589999999988888766655 455665542110000 000000000000
Q ss_pred HhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHH
Q 008804 329 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTW 408 (553)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (553)
.+.+.+...++...+..++++.++.......+..... .....+.+.++.+....+..+.+.......++.+++.+
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (447)
T d1pw4a_ 229 -EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR----YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTL 303 (447)
T ss_dssp --------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhh----hcchhhhhhhcccccccccchhhhhhhcchhhhhhhhh
Confidence 0000011122223445666666555544333333332 34667778877665444447888999999999999999
Q ss_pred HHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHH
Q 008804 409 IAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGIS 488 (553)
Q Consensus 409 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 488 (553)
+.|++.||++|++..........+........... ............+..++...+..+....+..|.+|++.|+++.|
T Consensus 304 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 382 (447)
T d1pw4a_ 304 LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382 (447)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred hhhhhhhhccccccccccchhHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999998876554444433333333222111 12223333333334444444555566788999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccC
Q 008804 489 LAVLTNFGS-NAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPET 539 (553)
Q Consensus 489 ~~~~~~~~g-~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (553)
+.+.+.+++ ..++|.+.|.+.|..|+...|++.+++.+++.++.+++.+++
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 434 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999888774 566899999999999999999888888777777666554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.8e-30 Score=252.10 Aligned_cols=364 Identities=14% Similarity=0.059 Sum_probs=241.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHH----HHHHHHHHHhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLL----VGRLLYGLGIGLA 207 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~----~~r~l~G~~~g~~ 207 (553)
+|+|..++|++.+++.+++.++++++|+++||+|||++++++..+..++.++..+..+..... +.+++.+.+.+..
T Consensus 38 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (417)
T d1pv7a_ 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhccccc
Confidence 899999999999999999999999999999999999999999999999999888877665543 4444444444444
Q ss_pred hhhhhhHhhhcccc--ccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHH-HHHHhcccCCchhHH
Q 008804 208 MHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALL-MGIGMWSLPPSPRWL 284 (553)
Q Consensus 208 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~-~~i~~~~~~e~p~~~ 284 (553)
.........+..++ +++.+..+........+..+++.+++.+.+. +|+..++.......+ ..+..+..+|++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T d1pv7a_ 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195 (417)
T ss_dssp GTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS
T ss_pred ccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--cccccccchhhHHHHHHHHHHHHhcccccch
Confidence 44444444444332 3455667778888889999999999987765 455555555555444 445556666665411
Q ss_pred HHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHH
Q 008804 285 LLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLF 364 (553)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (553)
.. +++ + +..+++.......+.++.+..+...........
T Consensus 196 ~~---------~~~-~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (417)
T d1pv7a_ 196 TV---------ANA-V-------------------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC 234 (417)
T ss_dssp CS---------SHH-H-------------------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred hh---------hhh-h-------------------------------hhhcccccccccccccccccccchhhhhHHHHH
Confidence 00 000 0 000011111112223333333333333223222
Q ss_pred HHhhChhhHHHhHHHHHHHcCCC---CchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHH
Q 008804 365 QQITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYY 441 (553)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 441 (553)
.... .....+.+....... .....+.......++..++..+.+++.||.++++.+..+.++.+++.+.+..
T Consensus 235 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~-- 308 (417)
T d1pv7a_ 235 TYDV----FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-- 308 (417)
T ss_dssp HHHH----HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHh----hhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc--
Confidence 2221 222222222221111 1145566677777888999999999999999999999888888777666653
Q ss_pred HhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHH-HHHHHHHHHHHHHhHHhHHhhCchhHHHH
Q 008804 442 KILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAV-LTNFGSNAIVTFAFSPLKELLGAENIFLL 520 (553)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 520 (553)
..+.+. .....+..+.......+...++..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|..|+...|++
T Consensus 309 ---~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~ 384 (417)
T d1pv7a_ 309 ---ATSALE-VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp ---CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ---ccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 133333 3333334444444455666789999999999999999864 56779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHHH
Q 008804 521 FAAIAFLAVLFIVRTVPETKGLSLEEIE 548 (553)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (553)
.+++.++..++.++..+++++...++.+
T Consensus 385 ~~~~~~~~~~~~~~~l~~~~~~~~~r~~ 412 (417)
T d1pv7a_ 385 LGLVALGFTLISVFTLSGPGPLSLLRRQ 412 (417)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCccchhHhh
Confidence 9999888888888888877776654433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=2.2e-14 Score=138.61 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=132.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
.+.+....+...+...++..++..+.+++.||+|+|+++.++.++.+++.++..+.++.+.+++..++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhccccccchhHHhHH-HHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcc
Q 008804 212 PLYIAETCPSQIRGTLISLK-ELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 276 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~~-~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~ 276 (553)
.+++.|.+|+++|+++.++. +....+|..++|.++|++.+.. ||+..|++.+++.++..++.++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 4567899999999999999888 9999999998888877665543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=4.3e-13 Score=131.15 Aligned_cols=162 Identities=17% Similarity=0.096 Sum_probs=124.0
Q ss_pred HHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 008804 373 VLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAV 452 (553)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (553)
+....|. +++.|.+. .+.+++.+...++..++.++.|+++||+|||+.+..+.++.+++.++........ . ....+
T Consensus 44 ~~~~~p~-~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~ 119 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-S-SIAVM 119 (447)
T ss_dssp HHHHHHH-TTSSTTCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-S-SSSHH
T ss_pred HHHHHHH-HHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh-h-hHHHH
Confidence 4444454 45678887 8999999999999999999999999999999999999988888877766533221 1 22233
Q ss_pred HHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhh-CchhHHHHHHHHHHHHHHH
Q 008804 453 SALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELL-GAENIFLLFAAIAFLAVLF 531 (553)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~ 531 (553)
.+..+..+.+.....+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+.. +|+..+++.+.+.++..++
T Consensus 120 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 199 (447)
T d1pw4a_ 120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 199 (447)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHH
Confidence 333334444444445566688999999999999999999999999999999988877765 5788888888888777776
Q ss_pred HHHhccc
Q 008804 532 IVRTVPE 538 (553)
Q Consensus 532 ~~~~~~~ 538 (553)
.+++.++
T Consensus 200 ~~~~~~~ 206 (447)
T d1pw4a_ 200 AFAMMRD 206 (447)
T ss_dssp HHHHCCC
T ss_pred HHHhccc
Confidence 6666654
|