Citrus Sinensis ID: 008892

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
MTSPNTKNAPESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYILFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYAGISTNSPLLSSVVGKTLTESSSWQDTPTLTSKASAGSLLSHQPGTQVSQFSHPQAAQNAASPSFPLPIYWQGYNGPSNNISPTPFQSSSTVSSPLTGPNRIWTSETNCSPALGSVTASESAAHQSPSIAPSHLNPNFSSSPIPVQCSPAPLTPFPASFKGPLSSTAAYMTDNNPNTSSVPSSCPDTKATEAQISGRAVPGPAHSAQTMNYPTSSFLGSASGPLLSPSPSLLTPGQLVTSRPPVLSSTQAMYPDKKDMAAMLPSSFNSPAAISPPVTQLPLLPLPTPNLQSQSQYSTTKFTEEFDFEAMNEKFKKDEVWGYLGKAKQSGKPETIEDNTADQNSRGKEADGLVKNGDPKPAYRKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFGNFQQRANQGYGGYVAGRGANYRGRYGGGRRYGYGGRGHGGNMHM
cccccccccccccccccEEEEEccccEEEEEEEEEccccccEEcccEEEcccccccccccccccccccEEEEEEEcccccccEEEcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccEcEEEEEEEcccEEEEEEEEEEcccccEEEHHcEccccccccccccccccccccEEEEEEEEccccccEEEccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEccccccccccccHHcccccccccccHHHHHccccHcccccccccccccccccccccccccccccccEcccccccccccccc
mtspntknapesYIGSFISLISKYEIRYEGVLYHLnvgdstiglknvksfgtegrkkdgpqvlpsekVYEYILFRgsdikdlevksspppqkeeqiyqdpaiiqsqyagistnspllssvvgktltessswqdtptltskasagsllshqpgtqvsqfshpqaaqnaaspsfplpiywqgyngpsnnisptpfqssstvsspltgpnriwtsetncspalgsvtasesaahqspsiapshlnpnfssspipvqcspapltpfpasfkgplsstaaymtdnnpntssvpsscpdtkateaqisgravpgpahsaqtmnyptssflgsasgpllspspslltpgqlvtsrppvlsstqamypdkkdmaamlpssfnspaaisppvtqlpllplptpnlqsqsqysttkfteefDFEAMNEKFKKDEVWGYLgkakqsgkpetiedntadqnsrgkeadglvkngdpkpayrkddffdtiscnslnrgtregQNRFSERMRLDTETFGNFQQranqgyggyvagrganyrgrygggrrygyggrghggnmhm
mtspntknapesyIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSfgtegrkkdgpqvlpsekVYEYILFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYAGISTNSPLLSSVVGKTLTessswqdtpTLTSKASAGSLLSHQPGTQVSQFSHPQAAQNAASPSFPLPIYWQGYNGPSNNISPTPFQSSSTVSSPLTGPNRIWTSETNCSPALGSVTASESAAHQSPSIAPSHLNPNFSSSPIPVQCSPAPLTPFPASFKGPLSSTAAYMTDNNPNTSSVPSSCPDTKATEAQISGRAVPGPAHSAQTMNYPTSSFLGSASGPLLSPSPSLLTPGQLVTSRPPVLSSTQAMYPDKKDMAAMLPSSFNSPAAISPPVTQLPLLPLPTPNLQSQSQYSTTKFTEEFDFEAMNEKFKKDEVWGYLGKakqsgkpetiedntadqnsrgkeadglvkngdpkpayrkddffdtiscnslnrgtregqnrfSERMRLDTETFGNFQQRANQGYGGYVAGRGANYrgrygggrrygyggrghggnmhm
MTSPNTKNAPESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYILFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYAGISTNSPLLSSVVGKTLTESSSWQDTPTLTSKASAGSLLSHQPGTQVSQFSHPQAAQNAASPSFPLPIYWQGYNGPSNNISPTPFQSSSTVSSPLTGPNRIWTSETNCSPALGSVTASESAAHQSPSIAPSHLNPNFSSSPIPVQCSPAPLTPFPASFKGPLSSTAAYMTDNNPNTSSVPSSCPDTKATEAQISGRAVPGPAHSAQTMNYPTssflgsasgpllspspslltpgqlVTSRPPVLSSTQAMYPDKKDMAAMLPSSFNSPAAIsppvtqlpllplptpnlqsqsqYSTTKFTEEFDFEAMNEKFKKDEVWGYLGKAKQSGKPETIEDNTADQNSRGKEADGLVKNGDPKPAYRKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFGNFQQRANQgyggyvagrganyrgrygggrrygyggrghggNMHM
************YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSF***************EKVYEYILFRGSDI**********************IIQ*QYAG***************************************************************PLPIYWQGY***************************************************************************************************************************************************************************************************************************************F*****KFKKDEVWGYL*******************************************FFDTISC************************FGNFQQRANQGYGGYVAGRGANYRGRYGGGRRYGYG**********
***************SFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYILFRGSDIKDLEVK********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PAYRKDDFFDTI*********************LDTETFGNFQQRAN*************************************
**********ESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYILFRGSDIKDLE**********EQIYQDPAIIQSQYAGISTNSPLLSSVVGKTLTESSSWQDTPTLTSKASAGSLL*********************SPSFPLPIYWQGYNGPSNNISPT*************GPNRIWTSETNCSP*****************IAPSHLNPNFSSSPIPVQCSPAPLTPFPASFKGPLSSTAAYMTDNN******************************SAQTMNYPTSSFLGSASGPLLSPSPSLLTPGQLVTSRPPVLSSTQAMYPDKKDMAAMLPSSFNSPAAISPPVTQLPLLPLPTPNLQSQSQYSTTKFTEEFDFEAMNEKFKKDEVWGYLGKAKQSGKPETIEDNTADQNSRGKEADGLVKNGDPKPAYRKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFGNFQQRANQGYGGYVAGRGANYRGRYGGGRRYGYGGRGHGGNMHM
**********ESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYILFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYA**************************PTLTSKASAGSLLSHQPGTQVSQFSHPQAAQNAASPSFPLPIYWQGYNGPSNNISP********************************************************************************************************************************************************************************************************************STTKFTEEFDFEAMNEKFKKDEVWGYLGKAK**********************************YRKDDFFDTISC*************F****RLDTETFGNFQQRANQGYGGYVAGRGANYRGRYGGGRRYGYGGR********
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iiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTSPNTKNAPESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYILFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYAGISTNSPLLSSVVGKTLTESSSWQDTPTLTSKASAGSLLSHQPGTQVSQFSHPQAAQNAASPSFPLPIYWQGYNGPSNNISPTPFQSSSTVSSPLTGPNRIWTSETNCSPALGSVTASESAAHQSPSIAPSHLNPNFSSSPIPVQCSPAPLTPFPASFKGPLSSTAAYMTDNNPNTSSVPSSCPDTKATEAQISGRAVPGPAHSAQTMNYPTSSFLGSASGPLLSPSPSLLTPGQLVTSRPPVLSSTQAMYPDKKDMAAMLPSSFNSPAAISPPVTQLPLLPLPTPNLQSQSQYSTTKFTEEFDFEAMNEKFKKDEVWGYLGKAKQSGKPETIEDNTADQNSRGKEADGLVKNGDPKPAYRKDDFFDTISCNSLNRGTREGQNRFSERMRLDTETFGNFQQRANQGYGGYVAGRGANYRGRYGGGRRYGYGGRGHGGNMHM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query549 2.2.26 [Sep-21-2011]
Q9FH77571 Decapping 5-like protein yes no 0.874 0.840 0.396 4e-78
Q9C658611 Protein decapping 5 OS=Ar no no 0.329 0.296 0.489 2e-37
Q498K9380 Protein LSM14 homolog B-B N/A no 0.227 0.328 0.471 8e-23
Q566L7382 Protein LSM14 homolog B O yes no 0.231 0.332 0.492 2e-22
Q68FI1422 Protein LSM14 homolog B-A N/A no 0.163 0.213 0.580 4e-22
Q8CGC4385 Protein LSM14 homolog B O yes no 0.163 0.233 0.559 4e-22
Q9BX40385 Protein LSM14 homolog B O no no 0.163 0.233 0.559 5e-22
Q8ND56463 Protein LSM14 homolog A O yes no 0.162 0.192 0.586 6e-22
Q5R4R4463 Protein LSM14 homolog A O yes no 0.162 0.192 0.586 6e-22
Q8AVJ2471 Protein LSM14 homolog A-B N/A no 0.162 0.188 0.586 9e-22
>sp|Q9FH77|DCP5L_ARATH Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2 SV=1 Back     alignment and function desciption
 Score =  292 bits (748), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 218/550 (39%), Positives = 287/550 (52%), Gaps = 70/550 (12%)

Query: 8   NAPESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEK 67
           N  +++IGSFISLISKYEIRYEG+LYHLNV DST+GLKNV+S GTEGRKKDGPQ+ P +K
Sbjct: 28  NVGDTFIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDK 87

Query: 68  VYEYILFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYA--GISTNSPLLSSVVGKTL 125
           VY+YILFRGSDIKDL+V  SP  Q  ++I  +  + QS ++   ++ +SP+     G  L
Sbjct: 88  VYDYILFRGSDIKDLQVNPSPSAQSRQEIQSEQDVNQSPHSRPAMTMSSPISGYDSGYGL 147

Query: 126 TESSSWQDTPTLTSK------------------ASAGSLLSHQPGTQVSQFSHPQAAQNA 167
              S W +TP L+SK                  A+AGSL         S  S   + Q+ 
Sbjct: 148 GRGSQWINTPALSSKPVPVTQHSSVPLSFQPPSANAGSLTE-------SPVSLIDSTQSN 200

Query: 168 ASPSFPLPIYWQGYNGPSNNISPTPFQSSSTVSSPLTGPNRIWTSETNCSPALGSVTASE 227
           A  S P+P + QG    S+ +     Q    VSS  T PN     +   SP +G V  S 
Sbjct: 201 AGSSMPIPSFVQGNKFASSGVPLGMMQ--KPVSSSSTIPNGPQIIDYFSSPIMGLVDDSS 258

Query: 228 SAAHQSPSIAPSHLNPNFSSSPIPVQCSPAPLTPFPASFKGPLSSTAAYMTDNNPNTSSV 287
               +SP ++    N ++SS+P P+  +     P  AS    LS  +     + PN   +
Sbjct: 259 QVVTRSPDVSS---NQSYSSNPSPLGQTQLHTPPGLASVSSNLSPPSEAQL-SAPNIQKI 314

Query: 288 PSSCPDTKATEAQISGRAVPGPAHSAQTMNYPTSSF------LGSASGPLLSPSPSLLTP 341
             S P       Q  G+ V  P       N+P  S       + S S P++ P P   +P
Sbjct: 315 YPSAP-------QAIGKVVYDPQS-----NHPHRSIPHELPAVASNSAPVI-PGPLSKSP 361

Query: 342 GQLVTSRPPVLSSTQAMYPDKKDMAAMLPSSFNSPAAISPPVTQLPLLPLPTPNLQSQSQ 401
                  P + S  Q +Y  ++  AA  P+S N P+    P    PLLPLP    QS+  
Sbjct: 362 ESFFDMDPSLQSRQQMVYRGQEMFAATNPASANVPSQSFAPRNHAPLLPLPVSAHQSRIP 421

Query: 402 YSTTKFTEEFDFEAMNEKFKKDEVWGYLGKAKQSGKPETIEDNTADQNSRGKEADGLVKN 461
            S+ ++TEEFDFEAMNEKFKK E+WGYLG+           +N  +QN  G+E   +  N
Sbjct: 422 SSSIEYTEEFDFEAMNEKFKKSELWGYLGR-----------NNQRNQNDYGEET-AIEPN 469

Query: 462 GDPKPAYRKDDFFDTISCNSLNRGTREGQ--NRFSERMRLDTETFGNFQQR---ANQGYG 516
            + KPAY KDDFFDTISCN L+R  R GQ  N+F E MR   E FGN  QR      G G
Sbjct: 470 AEGKPAYNKDDFFDTISCNQLDRVARSGQQHNQFPEHMRQVPEAFGNNFQRPPPLQPGQG 529

Query: 517 GYVAGRGANY 526
            Y+A +  NY
Sbjct: 530 AYLAAQ-TNY 538
As a component of the decapping complex, involved in the degradation of mRNAs. Promotes P-body formation. Translational repressor (By similarity).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C658|DCP5_ARATH Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1 Back     alignment and function description
>sp|Q498K9|L14BB_XENLA Protein LSM14 homolog B-B OS=Xenopus laevis GN=lsm14b-b PE=1 SV=1 Back     alignment and function description
>sp|Q566L7|LS14B_XENTR Protein LSM14 homolog B OS=Xenopus tropicalis GN=lsm14b PE=2 SV=1 Back     alignment and function description
>sp|Q68FI1|L14BA_XENLA Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm14b-a PE=1 SV=1 Back     alignment and function description
>sp|Q8CGC4|LS14B_MOUSE Protein LSM14 homolog B OS=Mus musculus GN=Lsm14b PE=2 SV=3 Back     alignment and function description
>sp|Q9BX40|LS14B_HUMAN Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B PE=1 SV=1 Back     alignment and function description
>sp|Q8ND56|LS14A_HUMAN Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3 Back     alignment and function description
>sp|Q5R4R4|LS14A_PONAB Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1 Back     alignment and function description
>sp|Q8AVJ2|L14AB_XENLA Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm14a-b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query549
224129944529 predicted protein [Populus trichocarpa] 0.868 0.901 0.524 1e-122
225427621568 PREDICTED: uncharacterized protein LOC10 0.947 0.915 0.512 1e-118
296085471518 unnamed protein product [Vitis vinifera] 0.888 0.942 0.507 1e-114
255557819600 conserved hypothetical protein [Ricinus 0.948 0.868 0.458 2e-99
147798114549 hypothetical protein VITISV_002509 [Viti 0.825 0.825 0.470 2e-82
356499741616 PREDICTED: uncharacterized protein LOC10 0.892 0.795 0.390 4e-77
15242378571 decapping 5-like protein [Arabidopsis th 0.874 0.840 0.396 3e-76
224079874579 predicted protein [Populus trichocarpa] 0.852 0.808 0.383 2e-74
224111756632 predicted protein [Populus trichocarpa] 0.896 0.778 0.369 4e-74
225423849616 PREDICTED: uncharacterized protein LOC10 0.872 0.777 0.384 2e-72
>gi|224129944|ref|XP_002328842.1| predicted protein [Populus trichocarpa] gi|222839140|gb|EEE77491.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 267/509 (52%), Positives = 326/509 (64%), Gaps = 32/509 (6%)

Query: 9   APESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKV 68
           A ESYIGS IS+ SKYEIRYEGVLYH+N  D+TIGLKNV+S+GTEGRKKDGPQ+ PS+KV
Sbjct: 12  AGESYIGSLISITSKYEIRYEGVLYHINPQDATIGLKNVRSYGTEGRKKDGPQIAPSDKV 71

Query: 69  YEYILFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYAGISTNSPLLSSVVGKTLTES 128
           YEYILFRGSDIKDL+V+S PP Q EEQIY DPAIIQ+             S +  +    
Sbjct: 72  YEYILFRGSDIKDLQVQSPPPDQTEEQIYNDPAIIQNH------------SALSSSTAAG 119

Query: 129 SSWQDTPTLTSKASAGSLLSHQPGTQVSQFSHPQAAQNAASPSFPLPIYWQGYNGPSNNI 188
              Q TP LT++A +G+L   QP   V   +  QA QNA  PS  +P + QGY+G S+  
Sbjct: 120 VQAQHTPALTTRAYSGALPLFQPVNHVGLTNLSQATQNAG-PSLSIPKHSQGYHGISSQ- 177

Query: 189 SPTPFQSSSTVSSPLTGPNRIWTSETNCSPALGSVTASESAAHQSPSIAPSHLNPNFSSS 248
                   S VSSPL   N +        P +G  + SE    +S ++A +  NP FSSS
Sbjct: 178 -------QSMVSSPLIVQNHMQALGLQEPPVMGLKSPSECITPES-TVATNPFNPIFSSS 229

Query: 249 PIPVQCSPAPLTPFPASFKGPLSSTAAYMTDNNPNTSSVP-SSCP----DTKATEAQISG 303
             PVQ + +P T    S K P+ S AA +  N    SS+P +S P    D   TE     
Sbjct: 230 LSPVQYATSPDTSSFLSLKTPVPSHAASLPANRLTMSSIPMTSIPMSSQDINTTETL--A 287

Query: 304 RAVPGPAHSAQTMNYPTSSFLGSASGPLLSPSPSLLTPGQLVTSRPPVLSSTQAMYPDKK 363
            A P     AQ++ Y   S++GS S  +L+P PSLL+P   + SRPPVLSS Q +YPD+K
Sbjct: 288 VADPMAMRPAQSLPYLMPSYVGSTSSSVLTPLPSLLSPHHFLQSRPPVLSSPQKLYPDQK 347

Query: 364 DMAAMLPSSFNSPAAISPPVTQLPLLPLPTPNLQSQSQYSTTKFTEEFDFEAMNEKFKKD 423
           D+AA+ P S  SP  +S P +Q PLLPLP  ++Q Q +Y T+KFTEEFDFEAMNEKFKKD
Sbjct: 348 DVAALTPLSSTSPPLLSTPASQPPLLPLPG-SVQ-QHKYLTSKFTEEFDFEAMNEKFKKD 405

Query: 424 EVWGYLGKAKQSGKPETIEDNTADQNSRGKEADGLVKNGDPKPAYRKDDFFDTISCNSLN 483
           EVWGYLGKAKQ  K E +EDNT DQ+   KEA  +V N DPKPAY+KD+FFDTISCN  N
Sbjct: 406 EVWGYLGKAKQREKTEGMEDNTTDQSMVDKEAPVVVLNLDPKPAYKKDEFFDTISCNIRN 465

Query: 484 RGTREGQNRFSERMRLDTETFGNFQQRAN 512
           +    GQN FSERM+LDTETFGN   R N
Sbjct: 466 Q-RWNGQNCFSERMKLDTETFGNLHLRPN 493

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225427621|ref|XP_002269544.1| PREDICTED: uncharacterized protein LOC100244212 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085471|emb|CBI29203.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557819|ref|XP_002519939.1| conserved hypothetical protein [Ricinus communis] gi|223540985|gb|EEF42543.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147798114|emb|CAN71774.1| hypothetical protein VITISV_002509 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499741|ref|XP_003518695.1| PREDICTED: uncharacterized protein LOC100808030 [Glycine max] Back     alignment and taxonomy information
>gi|15242378|ref|NP_199346.1| decapping 5-like protein [Arabidopsis thaliana] gi|75271993|sp|Q9FH77.1|DCP5L_ARATH RecName: Full=Decapping 5-like protein gi|10177004|dbj|BAB10254.1| unnamed protein product [Arabidopsis thaliana] gi|52354493|gb|AAU44567.1| hypothetical protein AT5G45330 [Arabidopsis thaliana] gi|61742759|gb|AAX55200.1| hypothetical protein At5g45330 [Arabidopsis thaliana] gi|63147402|gb|AAY34174.1| At5g45330 [Arabidopsis thaliana] gi|332007850|gb|AED95233.1| decapping 5-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224079874|ref|XP_002305956.1| predicted protein [Populus trichocarpa] gi|222848920|gb|EEE86467.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224111756|ref|XP_002315966.1| predicted protein [Populus trichocarpa] gi|222865006|gb|EEF02137.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225423849|ref|XP_002281060.1| PREDICTED: uncharacterized protein LOC100242198 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query549
TAIR|locus:2158470571 DCP5-L "decapping 5-like" [Ara 0.877 0.844 0.378 2.3e-71
TAIR|locus:2011410611 DCP5 "AT1G26110" [Arabidopsis 0.515 0.463 0.412 7.7e-68
UNIPROTKB|F1NEM2463 LSM14A "Uncharacterized protei 0.398 0.473 0.383 2.9e-30
UNIPROTKB|Q6NVR8469 lsm14a "Protein LSM14 homolog 0.382 0.447 0.377 3e-30
UNIPROTKB|Q566L7382 lsm14b "Protein LSM14 homolog 0.231 0.332 0.492 4e-30
UNIPROTKB|Q498K9380 lsm14b-b "Protein LSM14 homolo 0.227 0.328 0.485 8e-30
UNIPROTKB|Q68FI1422 lsm14b-a "Protein LSM14 homolo 0.409 0.533 0.361 8.4e-30
UNIPROTKB|Q3MHF8463 LSM14A "Protein LSM14 homolog 0.402 0.477 0.379 2.3e-29
UNIPROTKB|A0A8M2471 lsm14a-a "Protein LSM14 homolo 0.408 0.475 0.342 3.2e-29
UNIPROTKB|Q8AVJ2471 lsm14a-b "Protein LSM14 homolo 0.335 0.390 0.401 4.2e-29
TAIR|locus:2158470 DCP5-L "decapping 5-like" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 198/523 (37%), Positives = 262/523 (50%)

Query:     3 SPNTKNAPESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQV 62
             SP   N  +++IGSFISLISKYEIRYEG+LYHLNV DST+GLKNV+S GTEGRKKDGPQ+
Sbjct:    24 SPGN-NVGDTFIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQI 82

Query:    63 LPSEKVYEYILFRGSDIKDLEVKSSPPPQKEEQIYQDPAIIQSQYA--GISTNSPLLSSV 120
              P +KVY+YILFRGSDIKDL+V  SP  Q  ++I  +  + QS ++   ++ +SP+    
Sbjct:    83 PPCDKVYDYILFRGSDIKDLQVNPSPSAQSRQEIQSEQDVNQSPHSRPAMTMSSPISGYD 142

Query:   121 VGKTLTESSSWQDTPTLTSK----ASAGSL-LSHQP-----GTQV-SQFSHPQAAQNAAS 169
              G  L   S W +TP L+SK        S+ LS QP     G+   S  S   + Q+ A 
Sbjct:   143 SGYGLGRGSQWINTPALSSKPVPVTQHSSVPLSFQPPSANAGSLTESPVSLIDSTQSNAG 202

Query:   170 PSFPLPIYWQGYNGPSNNISPTPFQSSSTVSSPLTGPNRIWTSETNCSPALGSVTASESA 229
              S P+P + QG    S+ +     Q    VSS  T PN     +   SP +G V  S   
Sbjct:   203 SSMPIPSFVQGNKFASSGVPLGMMQKP--VSSSSTIPNGPQIIDYFSSPIMGLVDDSSQV 260

Query:   230 AHQSPSIAPSHLNPNFSSSPIPVQCSPAPLTPFPASFKGPLSSTAAYMTDNNPNTSSVPS 289
               +SP ++    N ++SS+P P+  +     P  AS    LS  +     + PN   +  
Sbjct:   261 VTRSPDVSS---NQSYSSNPSPLGQTQLHTPPGLASVSSNLSPPSEAQL-SAPNIQKIYP 316

Query:   290 SCPDTKATEAQISGRAVPGPAHSAQTMNYPTXXXXXXXXXXXXXXXXXXXXXXXXVTSRP 349
             S P       Q  G+ V  P  +    + P                             P
Sbjct:   317 SAP-------QAIGKVVYDPQSNHPHRSIPHELPAVASNSAPVIPGPLSKSPESFFDMDP 369

Query:   350 PVLSSTQAMYPDKKDMAAMLPSSFNSPAAIXXXXXXXXXXXXXXXXXXXXXXYSTTKFTE 409
              + S  Q +Y  ++  AA  P+S N P+                         S+ ++TE
Sbjct:   370 SLQSRQQMVYRGQEMFAATNPASANVPSQSFAPRNHAPLLPLPVSAHQSRIPSSSIEYTE 429

Query:   410 EFDFEAMNEKFKKDEVWGYLGKAKQSGKPETIEDNTADQNSRGKEADGLVKNGDPKPAYR 469
             EFDFEAMNEKFKK E+WGYLG+           +N  +QN  G+E   +  N + KPAY 
Sbjct:   430 EFDFEAMNEKFKKSELWGYLGR-----------NNQRNQNDYGEET-AIEPNAEGKPAYN 477

Query:   470 KDDFFDTISCNSLNRGTREGQ--NRFSERMRLDTETFGNFQQR 510
             KDDFFDTISCN L+R  R GQ  N+F E MR   E FGN  QR
Sbjct:   478 KDDFFDTISCNQLDRVARSGQQHNQFPEHMRQVPEAFGNNFQR 520
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2011410 DCP5 "AT1G26110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEM2 LSM14A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NVR8 lsm14a "Protein LSM14 homolog A" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q566L7 lsm14b "Protein LSM14 homolog B" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q498K9 lsm14b-b "Protein LSM14 homolog B-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q68FI1 lsm14b-a "Protein LSM14 homolog B-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MHF8 LSM14A "Protein LSM14 homolog A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A0A8M2 lsm14a-a "Protein LSM14 homolog A-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q8AVJ2 lsm14a-b "Protein LSM14 homolog A-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FH77DCP5L_ARATHNo assigned EC number0.39630.87430.8406yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_86000148
hypothetical protein (529 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
cd0173674 cd01736, LSm14_N, Like-Sm protein 14, N-terminal d 5e-39
pfam1270181 pfam12701, LSM14, Scd6-like Sm domain 1e-38
pfam09532100 pfam09532, FDF, FDF domain 2e-20
pfam14438113 pfam14438, SM-ATX, SM domain found in Ataxin-2 2e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 9e-05
cd0060063 cd00600, Sm_like, Sm and related proteins 3e-04
>gnl|CDD|212483 cd01736, LSm14_N, Like-Sm protein 14, N-terminal domain Back     alignment and domain information 
 Score =  136 bits (345), Expect = 5e-39
 Identities = 48/74 (64%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 11 ESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYE 70
            YIGS ISLISK +IRYEG+LY ++  DSTI LKNV+SFGTEGR      + PS++VY+
Sbjct: 2  TPYIGSKISLISKSDIRYEGILYTIDTEDSTIALKNVRSFGTEGRPTG-RPIPPSDEVYD 60

Query: 71 YILFRGSDIKDLEV 84
          YI+FRGSDIKDL V
Sbjct: 61 YIVFRGSDIKDLTV 74

LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles. Length = 74
>gnl|CDD|221724 pfam12701, LSM14, Scd6-like Sm domain Back     alignment and domain information
>gnl|CDD|220282 pfam09532, FDF, FDF domain Back     alignment and domain information
>gnl|CDD|222754 pfam14438, SM-ATX, SM domain found in Ataxin-2 Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|212462 cd00600, Sm_like, Sm and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 549
KOG1073361 consensus Uncharacterized mRNA-associated protein 100.0
PF1270196 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC 100.0
cd0173674 LSm14_N LSm14 (also known as RAP55) belongs to a f 100.0
PF09532104 FDF: FDF domain; InterPro: IPR019050 This motif is 99.71
cd0060063 Sm_like The eukaryotic Sm and Sm-like (LSm) protei 97.82
PF1443877 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1. 97.77
cd0173762 LSm16_N LSm16 belongs to a family of Sm-like prote 96.64
KOG3973 465 consensus Uncharacterized conserved glycine-rich p 96.51
PF0142367 LSM: LSM domain ; InterPro: IPR001163 This family 96.38
KOG3973465 consensus Uncharacterized conserved glycine-rich p 96.05
cd0171972 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins 95.56
smart0065167 Sm snRNP Sm proteins. small nuclear ribonucleoprot 95.52
cd0172268 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins 95.48
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 95.07
cd0171779 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins 94.98
cd0173168 archaeal_Sm1 The archaeal sm1 proteins: The Sm pro 94.96
PRK0073772 small nuclear ribonucleoprotein; Provisional 94.94
cd0172667 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins 94.94
cd0172874 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins 94.91
cd0172376 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins 94.86
TIGR01648 578 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein 94.77
cd0172581 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins 94.67
cd0172170 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins 94.39
COG195879 LSM1 Small nuclear ribonucleoprotein (snRNP) homol 94.15
KOG09211282 consensus Dosage compensation complex, subunit MLE 94.13
cd0616875 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins 93.46
cd0172490 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins 93.23
KOG0116419 consensus RasGAP SH3 binding protein rasputin, con 92.65
cd0173378 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins 92.41
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 91.13
cd0172774 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins 90.98
cd0172981 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins 90.64
cd0173276 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins 86.45
PLN03134144 glycine-rich RNA-binding protein 4; Provisional 84.98
KOG0116419 consensus RasGAP SH3 binding protein rasputin, con 82.86
TIGR01659346 sex-lethal sex-lethal family splicing factor. This 82.42
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 81.2
cd0172087 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins 80.11
>KOG1073 consensus Uncharacterized mRNA-associated protein RAP55 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-39  Score=333.77  Aligned_cols=149  Identities=43%  Similarity=0.626  Sum_probs=123.6

Q ss_pred             CCCCCccCceeEEeecCCeeEEEEeeeecCCCCeEEeccceecccCCCCCCCCCCCCCccccceEEEecCCccceeeccC
Q 008892            8 NAPESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYILFRGSDIKDLEVKSS   87 (549)
Q Consensus         8 ~~~~~~IGs~isLISk~~IRYeGiL~~Id~~~sTi~L~nVrsfGTEgR~~~~~~Ipps~~vy~yIvFrgsDIKDL~v~~~   87 (549)
                      +.+++|||++||||||.|||||||||+||++||||+|+||||||||||++++.+||+.++|||||||||+|||||.||+.
T Consensus         2 s~~t~yIGS~ISLISk~DIRYEGILy~in~qdSTlgLqnVRsfGTEgRk~~~pq~p~~~kVy~YIlFRGSDIKDL~V~~~   81 (361)
T KOG1073|consen    2 SLVTSYIGSFISLISKNDIRYEGILYTINLQDSTLGLQNVRSFGTEGRKTDGPQVPPDDKVYDYILFRGSDIKDLIVQET   81 (361)
T ss_pred             CcccccccceeEEeecccceeeeEEEeccccccceehhheeecccccCCCCCCcCCCCccceeeEEecCcccceeeeccC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCccCCCCchhhhccCCCCCCCCCCccccccccccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccc
Q 008892           88 PPPQKEEQIYQDPAIIQSQYAGISTNSPLLSSVVGKTLTESSSWQDTPTLTSKASAGSLLSHQPGTQVSQFSHPQAAQ  165 (549)
Q Consensus        88 p~~~~~~~~~~DPAI~~~~~p~~~~~s~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~plyQpg~~~~swg~s~~~~  165 (549)
                      |+.+....++.+|+|.         ...+.++..+.+....|.+..+.+-+....|..++.++|...+++|.....++
T Consensus        82 p~~~~~~~~p~~pp~p---------~~~~~~s~~s~~~~~~s~~~~~~~~~~~~~P~~~~~~~~~~~~g~~~~~~~~~  150 (361)
T KOG1073|consen   82 PAGQIPCSLPVPPPMP---------PQSSIPSQQSGSDPKISFQFAQAGNPVIGNPQGLITTNPVPAEGSIYGSFQPP  150 (361)
T ss_pred             cccCccccccCCCCCC---------cccccccccCCcccccccccccCCCcccCCcCccccCCCCccccccccccCCc
Confidence            7643333355566652         22234444555566667777777777777799999999999999999866554

>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A Back     alignment and domain information
>cd01736 LSm14_N LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>PF09532 FDF: FDF domain; InterPro: IPR019050 This motif is found in the C-terminal region of Sm-like proteins [] Back     alignment and domain information
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1 Back     alignment and domain information
>cd01737 LSm16_N LSm16 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>smart00651 Sm snRNP Sm proteins Back     alignment and domain information
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences Back     alignment and domain information
>PRK00737 small nuclear ribonucleoprotein; Provisional Back     alignment and domain information
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01728 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family Back     alignment and domain information
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] Back     alignment and domain information
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>PLN03134 glycine-rich RNA-binding protein 4; Provisional Back     alignment and domain information
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01659 sex-lethal sex-lethal family splicing factor Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
2fb7_A95 Nmr Solution Structure Of Protein From Zebra Fish D 7e-17
2vxe_A88 Solution Structure Of The Lsm Domain Of Drosophila 6e-15
>pdb|2FB7|A Chain A, Nmr Solution Structure Of Protein From Zebra Fish Dr.13312 Length = 95 Back     alignment and structure 
Iteration: 1

 Score = 85.5 bits (210), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
          YIGS ISLISK EIRYEG+LY ++  +ST+ L  V+SFGTE R  D P + P ++ +EYI
Sbjct: 17 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IAPRDETFEYI 75
Query: 73 LFRGSDIKDLEVKSSPPP 90
          +FRGSDIKDL V   P P
Sbjct: 76 IFRGSDIKDLTVCEPPKP 93
>pdb|2VXE|A Chain A, Solution Structure Of The Lsm Domain Of Drosophila Melanogaster Tral (Trailer Hitch) Length = 88 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query549
2fb7_A95 SM-like protein, LSM-14_N (RAP55); DR.13312, BC055 100.0
2vxe_A88 CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA 100.0
2vc8_A84 Enhancer of mRNA-decapping protein 3; P-BODY compo 99.35
2rm4_A103 CG6311-PB, DM EDC3; enhancer of mRNA decapping, P- 97.39
4a53_A125 EDC3; RNA binding protein; NMR {Schizosaccharomyce 97.13
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 96.84
1d3b_B91 Protein (small nuclear ribonucleoprotein associat 96.55
1y96_A86 Gemin6, SIP2, GEM-associated protein 6; SM fold, p 96.36
3s6n_G76 Small nuclear ribonucleoprotein G; SMN complex, SM 95.94
1d3b_A75 Protein (small nuclear ribonucleoprotein SM D3); s 95.87
2y9a_D126 Small nuclear ribonucleoprotein SM D3; splicing-RN 95.72
1h64_175 SnRNP SM-like protein; SM fold, spliceosome, snRNP 95.72
1i4k_A77 Putative snRNP SM-like protein; core snRNP domain, 95.69
1i8f_A81 Putative snRNP SM-like protein; beta barrel-like S 95.61
2fwk_A121 U6 snRNA-associated SM-like protein LSM5; structur 95.54
1th7_A81 SnRNP-2, small nuclear riboprotein protein; archae 95.43
1b34_A119 Protein (small nuclear ribonucleoprotein SM D1); s 95.35
4emk_A94 U6 snRNA-associated SM-like protein LSM5; SM fold, 95.32
4emh_A105 Probable U6 snRNA-associated SM-like protein LSM4; 95.03
1ljo_A77 Archaeal SM-like protein AF-SM2; snRNP, core snRNP 94.69
4emk_B75 U6 snRNA-associated SM-like protein LSM6; SM fold, 94.58
1mgq_A83 SM-like protein; LSM, RNA-binding, archea, RNA bin 94.26
1m5q_A130 SMAP3, small nuclear ribonucleoprotein homolog, SM 94.21
1n9r_A93 SMF, small nuclear ribonucleoprotein F, snRNP-F, S 94.2
4emk_C113 U6 snRNA-associated SM-like protein LSM7; SM fold, 94.06
3bw1_A96 SMX4 protein, U6 snRNA-associated SM-like protein 93.82
3s6n_F86 Small nuclear ribonucleoprotein F; SMN complex, SM 92.52
4emg_A93 Probable U6 snRNA-associated SM-like protein LSM3; 91.13
1h2v_Z156 20 kDa nuclear CAP binding protein; CAP-binding-co 89.92
2wax_B44 Enhancer of mRNA-decapping protein 3; DEAD-box pro 89.04
3s6n_E92 Small nuclear ribonucleoprotein E; SMN complex, SM 86.31
1b34_B118 Protein (small nuclear ribonucleoprotein SM D2); s 85.33
3q2s_C229 Cleavage and polyadenylation specificity factor S; 82.9
3d3j_A 306 Enhancer of mRNA-decapping protein 3; HEDC3, phosp 81.46
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A Back     alignment and structure
Probab=100.00  E-value=1e-38  Score=274.55  Aligned_cols=84  Identities=54%  Similarity=0.894  Sum_probs=75.5

Q ss_pred             CCCCCCccCceeEEeecCCeeEEEEeeeecCCCCeEEeccceecccCCCCCCCCCCCCCccccceEEEecCCccceeecc
Q 008892            7 KNAPESYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYILFRGSDIKDLEVKS   86 (549)
Q Consensus         7 ~~~~~~~IGs~isLISk~~IRYeGiL~~Id~~~sTi~L~nVrsfGTEgR~~~~~~Ipps~~vy~yIvFrgsDIKDL~v~~   86 (549)
                      ++...+|||++||||||+|||||||||+||.+++||+|+||||||||||+++ .+|||+++|||||+|||+|||||+|||
T Consensus        11 ~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~-~~ipp~~~vyeyIvFrGsDIKDL~V~e   89 (95)
T 2fb7_A           11 PSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTD-RPIAPRDETFEYIIFRGSDIKDLTVCE   89 (95)
T ss_dssp             -----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCS-SCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred             CCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCC-CccCCCCcceeEEEEcCCCcceEEEec
Confidence            5678999999999999999999999999999999999999999999999876 459999999999999999999999999


Q ss_pred             CCCCC
Q 008892           87 SPPPQ   91 (549)
Q Consensus        87 ~p~~~   91 (549)
                      .|+++
T Consensus        90 ~p~~~   94 (95)
T 2fb7_A           90 PPKPI   94 (95)
T ss_dssp             CSCSC
T ss_pred             CCCCC
Confidence            87754
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster} Back     alignment and structure
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens} Back     alignment and structure
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster} Back     alignment and structure
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Back     alignment and structure
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A Back     alignment and structure
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens} Back     alignment and structure
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G Back     alignment and structure
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 Back     alignment and structure
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D Back     alignment and structure
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A* Back     alignment and structure
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A* Back     alignment and structure
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A* Back     alignment and structure
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A Back     alignment and structure
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1 Back     alignment and structure
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A Back     alignment and structure
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A Back     alignment and structure
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe} Back     alignment and structure
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1 Back     alignment and structure
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B Back     alignment and structure
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A Back     alignment and structure
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1 Back     alignment and structure
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A Back     alignment and structure
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C Back     alignment and structure
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F Back     alignment and structure
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe} Back     alignment and structure
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Back     alignment and structure
>2wax_B Enhancer of mRNA-decapping protein 3; DEAD-box protein, nucleotide-binding, RCK, miRNA, P-bodies, helicase, RNA-binding, proto-oncogene; HET: CXS; 2.30A {Homo sapiens} PDB: 2way_B Back     alignment and structure
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E Back     alignment and structure
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B Back     alignment and structure
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Back     alignment and structure
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 549
d2vxfa180 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebraf 9e-38
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]} Length = 80 Back     information, alignment and structure

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: LSM14 N-terminal domain-like
domain: LSM14 homolog A (Lsm14a)
species: Zebrafish (Danio rerio) [TaxId: 7955]

 Score =  131 bits (332), Expect = 9e-38
 Identities = 46/78 (58%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 13 YIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYI 72
          YIGS ISLISK EIRYEG+LY ++  +ST+ L  V+SFGTE R  D P + P ++ +EYI
Sbjct: 2  YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP-IAPRDETFEYI 60

Query: 73 LFRGSDIKDLEVKSSPPP 90
          +FRGSDIKDL V   P P
Sbjct: 61 IFRGSDIKDLTVCEPPKP 78

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query549
d2vxfa180 LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) 100.0
d1d3bb_81 B core SNRNP protein {Human (Homo sapiens) [TaxId: 97.46
d1d3ba_72 D3 core SNRNP protein {Human (Homo sapiens) [TaxId 96.14
d1i8fa_71 Archaeal homoheptameric Sm protein {Archaeon Pyrob 95.88
d1h641_71 Archaeal homoheptameric Sm protein {Archaeon Pyroc 95.43
d1th7a176 Archaeal homoheptameric Sm protein {Sulfolobus sol 95.42
d1b34a_80 D1 core SNRNP protein {Human (Homo sapiens) [TaxId 95.26
d1m5q1_127 Sm-Like archaeal protein Smap3 {Archaeon Pyrobacul 94.91
d1mgqa_74 Archaeal homoheptameric Sm protein {Archaeon Metha 94.89
d1i4k1_72 Archaeal homoheptameric Sm protein {Archaeon Archa 94.78
d2fwka192 U6 snRNA-associated sm-like protein LSM5 {Cryptosp 93.97
d1ljoa_75 Archaeal homoheptameric Sm protein {Archaeon Archa 93.85
d1n9ra_68 Small nuclear ribonucleoprotein F, Smf {Baker's ye 87.27
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: LSM14 N-terminal domain-like
domain: LSM14 homolog A (Lsm14a)
species: Zebrafish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.7e-38  Score=263.79  Aligned_cols=77  Identities=57%  Similarity=0.955  Sum_probs=73.6

Q ss_pred             CccCceeEEeecCCeeEEEEeeeecCCCCeEEeccceecccCCCCCCCCCCCCCccccceEEEecCCccceeeccCCC
Q 008892           12 SYIGSFISLISKYEIRYEGVLYHLNVGDSTIGLKNVKSFGTEGRKKDGPQVLPSEKVYEYILFRGSDIKDLEVKSSPP   89 (549)
Q Consensus        12 ~~IGs~isLISk~~IRYeGiL~~Id~~~sTi~L~nVrsfGTEgR~~~~~~Ipps~~vy~yIvFrgsDIKDL~v~~~p~   89 (549)
                      +|||++||||||+||||||+||+||.+++||+|+||||||||||+++ .+|||+++|||||+|||+|||||+|+|.|+
T Consensus         1 pyIGs~IsLISk~dIRYeGiL~~Id~~~sTi~L~nVrsfGTEgR~~~-~~ipp~~~vy~~IvFrgsDIKdL~v~e~p~   77 (80)
T d2vxfa1           1 PYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTD-RPIAPRDETFEYIIFRGSDIKDLTVCEPPK   77 (80)
T ss_dssp             CSTTSEEEEEETTSCEEEEEEEEEETTTTEEEEEEEEECCSTTSCCS-SCCCCCCCCEEEEEEETTTEEEEEESSCCC
T ss_pred             CccCCEEEEEEcCCcEEEEEEEeeccccCEEEeeeeeEeecCCCCCC-CccCCCCcceeEEEEcCcCcceEEeccCCC
Confidence            69999999999999999999999999999999999999999999876 569999999999999999999999999764
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]} Back     information, alignment and structure
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]} Back     information, alignment and structure
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure