Citrus Sinensis ID: 008902
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYR6 | 624 | Probable peptide/nitrate | yes | no | 0.969 | 0.852 | 0.752 | 0.0 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.856 | 0.824 | 0.387 | 1e-105 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.854 | 0.822 | 0.384 | 7e-99 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.859 | 0.806 | 0.379 | 2e-98 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.892 | 0.830 | 0.377 | 2e-97 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.788 | 0.794 | 0.350 | 1e-84 | |
| Q9FNL7 | 582 | Peptide transporter PTR3- | no | no | 0.872 | 0.823 | 0.327 | 7e-79 | |
| Q9SZY4 | 577 | Nitrate transporter 1.4 O | no | no | 0.846 | 0.805 | 0.361 | 3e-77 | |
| Q9FNL8 | 586 | Peptide transporter PTR3- | no | no | 0.872 | 0.817 | 0.319 | 5e-77 | |
| P0CI03 | 575 | Putative peptide/nitrate | no | no | 0.832 | 0.794 | 0.334 | 6e-76 |
| >sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/582 (75%), Positives = 484/582 (83%), Gaps = 50/582 (8%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTCM
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA------- 473
PVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 474 -----------------------------------------GLLEFLYEEAPDAMKSIGS 492
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 493 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
AYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINT
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINT 580
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/531 (38%), Positives = 304/531 (57%), Gaps = 61/531 (11%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++ A ++N V
Sbjct: 13 VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P N D
Sbjct: 72 TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ + DKAA+E
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302
Query: 352 KEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V Q TM+
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQ 362
Query: 409 HMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI 467
HMGK ++P + +F +S+ +Y +PL R+ T + RG +QLQR+GIGL VSI
Sbjct: 363 HMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSI 422
Query: 468 LSVIWAGL---------------------------------------------LEFLYEE 482
++I AG+ LEF Y++
Sbjct: 423 FAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQ 482
Query: 483 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 533
APDAM+S+ SA + LG + +++L +++ +T K G+P W+ N+N
Sbjct: 483 APDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNLN 531
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 204/531 (38%), Positives = 296/531 (55%), Gaps = 62/531 (11%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+ +S +V
Sbjct: 14 LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P C
Sbjct: 73 SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
G A + Q + LY+ G GI+PCVSSFGADQFD+ + K FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VA+ RK E + LYE S+I GS K+ HT DKAA+E
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302
Query: 352 KED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V Q T++
Sbjct: 303 ESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362
Query: 409 HMG-KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI 467
HMG K+P + +F LS+ +Y VP R+ TGH RG +QLQR+GIGL +SI
Sbjct: 363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422
Query: 468 LSVIWAGL---------------------------------------------LEFLYEE 482
S++ AG+ LEF Y++
Sbjct: 423 FSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQ 482
Query: 483 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 533
APDAM+S+ SA + A G + ++ L +++ VT + G+P W+A+N+N
Sbjct: 483 APDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRS--GGRPGWIAKNLN 531
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 202/532 (37%), Positives = 297/532 (55%), Gaps = 60/532 (11%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 468
+G +LP + F S+ + + LY VPL R+ TG +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440
Query: 469 ------------------------------SVIWA----------------GLLEFLYEE 482
SV+W G LEF Y++
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500
Query: 483 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
+PDAM+S+ SA A L LG + +S++ +++ T + GQ W++ N+N+
Sbjct: 501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNS 550
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (915), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 205/543 (37%), Positives = 301/543 (55%), Gaps = 53/543 (9%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E +N L G+ ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 24 EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 448
+V+ ++ TL VQQ +MN + ++P VF L + + + +Y VP RR TG
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434
Query: 449 HPRGASQLQRVGIGLAVSIL----------------------SVIWA------------- 473
P+G + LQR+GIGL +S+L S+ W
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDFVAMSIFWQIPQYILMGIAEVF 494
Query: 474 ---GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 530
G +EF Y+E+PDAM+S+ SA A L +G + +S++ +++ T G+ W+
Sbjct: 495 FFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTA--LGGKDGWVPD 552
Query: 531 NIN 533
++N
Sbjct: 553 DLN 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 186/530 (35%), Positives = 281/530 (53%), Gaps = 97/530 (18%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++HG P TG W A FIF NE ER+AY+G++ N++T+ +H++ ++ V
Sbjct: 31 IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G +ADAY GRYWTIA F+ IY G+ +TL A++ P
Sbjct: 90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142
Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
++ +GS C PA Q L++ LY+ G GI+PCVSSFGADQFD+ + F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201
Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
FN+FY ++ +GA V+ T++V+IQ +GW F + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261
Query: 291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALE 350
SP+T V QVLVAA+RK + +VP + S +G
Sbjct: 262 SPITSVCQVLVAAYRKSNL-----------KVP-EDSTDEGDA----------------- 292
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
N +PWKLCTVTQVEEVK L+RLVPI A I+ +V+ ++ TL VQQ M +
Sbjct: 293 ------NTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI 346
Query: 411 GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSV 470
G ++P + +F S+ + + +Y VPL RR TG +G ++LQR+GIGL VS+LS+
Sbjct: 347 GLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSL 406
Query: 471 IWA----------------------------------------------GLLEFLYEEAP 484
+A G +EF YE++P
Sbjct: 407 TFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSP 466
Query: 485 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL-AQNIN 533
D+M+S+ SA+A L LG + +S++ +++ ++ G+ W+ + NIN
Sbjct: 467 DSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS-----GKDCWIPSDNIN 511
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 177/541 (32%), Positives = 280/541 (51%), Gaps = 62/541 (11%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G P+ S G W A F+ E+ ERMAY+G+S N+ +M +
Sbjct: 6 VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ DA LGRY T I IY +G+ +TL T+
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + + + +CE A Q+ + LY G G +P +S+ GADQFD
Sbjct: 124 GIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
KT FFN++ S+ G + A T++VY+Q GW +G + + IS +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
P YRH+LP GSP T++A+V+VA+FRK +A + ++ +E+P KG+ I T
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R LD+A+L+ + W LCT T+VEE K ++R++P+ T + +++L + TL V
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354
Query: 401 QQAYTMNTHM-GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV 459
+Q T++ + G +P + F LS+ + + LY FV + R+ TG+PRG + LQR+
Sbjct: 355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRM 414
Query: 460 GIGLAVSILSVIWAGL-------------------------------------------- 475
GIGL IL +I A +
Sbjct: 415 GIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLE 474
Query: 476 ---LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 532
LEF Y++AP++MKS+G++Y+ + +G F +S L S + +T +G W+ N+
Sbjct: 475 VAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGRG---WILNNL 531
Query: 533 N 533
N
Sbjct: 532 N 532
|
Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 192/531 (36%), Positives = 282/531 (53%), Gaps = 66/531 (12%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G + + + P C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRP--PTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I +I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGI----RIEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLA 464
TM ++G K+P + VF +I + L++Y +P ++ G P G S LQR+ IGL
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLV 417
Query: 465 VSI-------------LSV-----------------------------IWAGLLEFLYEE 482
+S LSV I+ G L+F +
Sbjct: 418 LSTAGMAAAALVEQKRLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQ 477
Query: 483 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 533
+P MK++ + LG F +S L SI+K VT WLA NIN
Sbjct: 478 SPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTST--DVGWLADNIN 526
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 173/541 (31%), Positives = 283/541 (52%), Gaps = 62/541 (11%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G + S+TG W A F+ E+ ERMAY+G+S N+V +M +
Sbjct: 6 VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ADA+ GRY T I + IYL G+ +TL ++
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + + + +CE A Q+ + LY G G +P +S+ GADQFDE
Sbjct: 124 GLKPPKCSTANVE----NCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
K H FFN++ S+ G A T++VY+Q GW +G + + S +F +GT
Sbjct: 180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
LYRH+LP GSP T++A+V+VA+ RK SS YE+P A K + I T
Sbjct: 240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDS-TRFYELPPMEYASKRAFPIHSTSS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R L++A+L+ + W+LCT+T+VEE K +++++P+ T + +++L + +TL +
Sbjct: 299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354
Query: 401 QQAYTMNTHM-GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV 459
+Q T++ + +P + F S+ + + +Y FV R++TG+PRG + LQR+
Sbjct: 355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRM 414
Query: 460 GIG----------------------------------LAVSILSV----IWAGL------ 475
GIG + +SI ++ + GL
Sbjct: 415 GIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIE 474
Query: 476 ---LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 532
LEF Y++AP++MKS+G++Y + + +G F +SIL S + +T +G W+ N+
Sbjct: 475 IAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRG---WIQNNL 531
Query: 533 N 533
N
Sbjct: 532 N 532
|
Peptide transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (729), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 172/514 (33%), Positives = 274/514 (53%), Gaps = 57/514 (11%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI E +ER++YFGL+ N+V ++ ++++ + VN + G++
Sbjct: 37 ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182
+LGGF+ADAYLGRY T+ + TTIYL GL + TM F+P C + EP
Sbjct: 97 LLGGFIADAYLGRYATVLVATTIYLMGL----VLLTMSWFIPGLKPCHQEV----CVEPR 148
Query: 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242
K+ ++ + + +Y+ G G +P + SFGADQFD+ + + FFN++ +S+ G
Sbjct: 149 KAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGI 207
Query: 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA 302
+ A T V YI+ GWG A L + M IS ++FFIG P YR+R P GSPLT + QV VA
Sbjct: 208 LTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVA 267
Query: 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKI-AHTDDFRCLDKAALELKEDVI---NP 358
A KR+ + S + L+EV SG++ HT+ + LDKAA+ ++ +
Sbjct: 268 AIAKRNLPYPSDPSL-LHEVSKTEFT---SGRLLCHTEHLKFLDKAAIIEDKNPLALEKQ 323
Query: 359 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT 418
SPW+L T+T+VEE K ++ ++PI T+ + T+ T ++QA TM+ H+G +P
Sbjct: 324 SPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGGFTVPPA 383
Query: 419 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI----------- 467
M L++ + L++Y VPL R IT + RG + LQR+G G+ S+
Sbjct: 384 SMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEK 443
Query: 468 -----------LSVIW----------------AGLLEFLYEEAPDAMKSIGSAYAALAGG 500
+SVIW GL E+ Y + PD+M+S+G A+ G
Sbjct: 444 QRLDRTNNNKPMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIG 503
Query: 501 LGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
F ++L + + ++ N +W +++N+
Sbjct: 504 AASFLNNLLITAVDTLAEN--FSGKSWFGKDLNS 535
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| 224053581 | 638 | predicted protein [Populus trichocarpa] | 0.972 | 0.836 | 0.788 | 0.0 | |
| 296085541 | 606 | unnamed protein product [Vitis vinifera] | 0.972 | 0.881 | 0.807 | 0.0 | |
| 225425292 | 640 | PREDICTED: probable peptide/nitrate tran | 0.972 | 0.834 | 0.761 | 0.0 | |
| 449468910 | 637 | PREDICTED: probable peptide/nitrate tran | 0.972 | 0.838 | 0.763 | 0.0 | |
| 356569101 | 631 | PREDICTED: probable peptide/nitrate tran | 0.972 | 0.846 | 0.757 | 0.0 | |
| 357501519 | 638 | Peptide transporter-like protein [Medica | 0.969 | 0.833 | 0.754 | 0.0 | |
| 147771745 | 612 | hypothetical protein VITISV_040927 [Viti | 0.954 | 0.856 | 0.744 | 0.0 | |
| 15240621 | 624 | putative peptide/nitrate transporter [Ar | 0.969 | 0.852 | 0.752 | 0.0 | |
| 297811451 | 625 | proton-dependent oligopeptide transport | 0.969 | 0.851 | 0.754 | 0.0 | |
| 147866216 | 626 | hypothetical protein VITISV_008303 [Viti | 0.959 | 0.841 | 0.744 | 0.0 |
| >gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/586 (78%), Positives = 499/586 (85%), Gaps = 52/586 (8%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
MGS EIKSPE L ETPAT S+ KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1 MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F SSNAVNNFLG
Sbjct: 61 KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED +
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGV 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
+PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTLSVQQAYT+NTH+G LKLP
Sbjct: 361 DPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLP 420
Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA--- 473
VT MPVFP LSIFLILSLYYS FVP+ RRITGHPRGASQLQRVGIGLA SILSV WA
Sbjct: 421 VTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQRVGIGLAFSILSVAWAAIF 480
Query: 474 ---------------------------------------------GLLEFLYEEAPDAMK 488
GLLEFLYEEAPDAMK
Sbjct: 481 ERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 540
Query: 489 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
SIGSAYAALAGG+GCFAASILNSI+KSVTGNP K Q +WL+QNINT
Sbjct: 541 SIGSAYAALAGGIGCFAASILNSIVKSVTGNPDKRQQSWLSQNINT 586
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2413), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/552 (80%), Positives = 492/552 (89%), Gaps = 18/552 (3%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA--- 473
VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGYC 480
Query: 474 -----------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK 522
GLLEFLYEEAPDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++
Sbjct: 481 LIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQ 540
Query: 523 GQPNWLAQNINT 534
P+WL+QNINT
Sbjct: 541 MHPSWLSQNINT 552
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/586 (76%), Positives = 492/586 (83%), Gaps = 52/586 (8%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA--- 473
VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 480
Query: 474 ---------------------------------------------GLLEFLYEEAPDAMK 488
GLLEFLYEEAPDAM+
Sbjct: 481 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 540
Query: 489 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINT
Sbjct: 541 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINT 586
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/588 (76%), Positives = 490/588 (83%), Gaps = 54/588 (9%)
Query: 1 MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
MGSREIKS + ETP S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1 MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60
Query: 55 HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH F SS+AVNNF
Sbjct: 61 RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120
Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+ F+PNQ CD++S
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180
Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240
Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300
Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354
RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKED 360
Query: 355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLK 414
NPSPWKLCTVTQVEEVK L++L+PIPACTIMLN++LTE+LTLSVQQAYTMNTH+G+LK
Sbjct: 361 GGNPSPWKLCTVTQVEEVKILLKLIPIPACTIMLNLVLTEYLTLSVQQAYTMNTHIGRLK 420
Query: 415 LPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA- 473
LPVTCMPVFPGLSIFLILSLYYS FVPL RRITGHP GASQLQRVGIGLA+SILSV WA
Sbjct: 421 LPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITGHPHGASQLQRVGIGLAISILSVAWAG 480
Query: 474 -----------------------------------------------GLLEFLYEEAPDA 486
GLLEFLYEEAPDA
Sbjct: 481 AFERYRRNFAIRSGYEASFLSPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 540
Query: 487 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
MKSIGSAYAALAGGLGCFAAS+LNSIIKSVTG+P P+WL+QNINT
Sbjct: 541 MKSIGSAYAALAGGLGCFAASLLNSIIKSVTGSPNGRNPSWLSQNINT 588
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/582 (75%), Positives = 484/582 (83%), Gaps = 48/582 (8%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M S EIKSP + +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I
Sbjct: 1 MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+ F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED NPSP
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
W+LCTVTQVEEVK L++L+PIPACTIMLNV+LTEFLTLSVQQAYT+NTH+G+LKLPVTCM
Sbjct: 361 WRLCTVTQVEEVKILMKLIPIPACTIMLNVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCM 420
Query: 421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA------- 473
PVFPGLS+FLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 PVFPGLSVFLILSLYYSIFVPVFRRITGHPHGASQLQRVGIGLAVSILSVAWAAIFERYR 480
Query: 474 -----------------------------------------GLLEFLYEEAPDAMKSIGS 492
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RNYAIKHGYLASFLTAMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 493 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
AYAALAGGLGCF A+I+N+IIKS TGN KGQP+WL+QNINT
Sbjct: 541 AYAALAGGLGCFVATIINNIIKSATGNLDKGQPSWLSQNINT 582
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/583 (75%), Positives = 488/583 (83%), Gaps = 51/583 (8%)
Query: 1 MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
M + EIKSPE+ Q+ TP TS S RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1 MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58
Query: 60 ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59 EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118
Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAA+RKR +F +SE++GLYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D NPS
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPS 358
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419
W LCTVTQVEEVK L++L+PIPACTIMLNVILTEFLTLSVQQAYT+NTH+GKLKLPVTC
Sbjct: 359 QWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTC 418
Query: 420 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA------ 473
MPVFPGLS+FLIL+LYY TFVPL +RITGHP GASQLQR+GIGL VSILSV WA
Sbjct: 419 MPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKY 478
Query: 474 ------------------------------------------GLLEFLYEEAPDAMKSIG 491
GLLEFLYEEAPDAMKSIG
Sbjct: 479 RRNYAIKNEFEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIG 538
Query: 492 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
SAYAALAGGLGCF A+ +NS++KS TGN K Q +WL+QNINT
Sbjct: 539 SAYAALAGGLGCFFATFINSVVKSATGNSDKRQESWLSQNINT 581
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/586 (74%), Positives = 482/586 (82%), Gaps = 62/586 (10%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFR +D
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFR----------KDGA 350
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 351 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 410
Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA--- 473
VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA
Sbjct: 411 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 470
Query: 474 ---------------------------------------------GLLEFLYEEAPDAMK 488
GLLEFLYEEAPDAM+
Sbjct: 471 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 530
Query: 489 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINT
Sbjct: 531 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINT 576
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/582 (75%), Positives = 484/582 (83%), Gaps = 50/582 (8%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTCM
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA------- 473
PVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 474 -----------------------------------------GLLEFLYEEAPDAMKSIGS 492
GLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 493 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
AYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINT
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINT 580
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/583 (75%), Positives = 486/583 (83%), Gaps = 51/583 (8%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
SSVLGGFLADAYLGRYWTIAIFTT+YL L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H+DDF LDKAAL+LKED + PS
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPS 360
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419
PWKLCTVTQVEEVK L+RL+PIPACTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTC
Sbjct: 361 PWKLCTVTQVEEVKILIRLIPIPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTC 420
Query: 420 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA------ 473
MPVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 MPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENY 480
Query: 474 ------------------------------------------GLLEFLYEEAPDAMKSIG 491
GLLEFLYEEAPDAMKSIG
Sbjct: 481 RRHYAIQHGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 540
Query: 492 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
SAYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINT
Sbjct: 541 SAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINT 581
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/586 (74%), Positives = 482/586 (82%), Gaps = 59/586 (10%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DL K + GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 353
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 354 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 413
Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA--- 473
VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA
Sbjct: 414 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 473
Query: 474 ---------------------------------------------GLLEFLYEEAPDAMK 488
GLLEFLYEEAPDAM+
Sbjct: 474 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 533
Query: 489 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINT
Sbjct: 534 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINT 579
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| TAIR|locus:2181655 | 624 | AT5G13400 [Arabidopsis thalian | 0.868 | 0.764 | 0.802 | 2.2e-220 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.768 | 0.740 | 0.427 | 3.3e-98 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.766 | 0.738 | 0.418 | 3.8e-93 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.795 | 0.740 | 0.414 | 8.9e-92 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.763 | 0.716 | 0.406 | 2.1e-90 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.448 | 0.451 | 0.417 | 3.6e-82 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.748 | 0.712 | 0.392 | 8.4e-79 | |
| TAIR|locus:2008855 | 590 | NRT1.1 "nitrate transporter 1. | 0.755 | 0.703 | 0.375 | 2.9e-76 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.754 | 0.694 | 0.370 | 5.2e-75 | |
| TAIR|locus:2161428 | 586 | AT5G46040 [Arabidopsis thalian | 0.775 | 0.726 | 0.344 | 1.1e-74 |
| TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2009 (712.3 bits), Expect = 2.2e-220, Sum P(2) = 2.2e-220
Identities = 383/477 (80%), Positives = 422/477 (88%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ LKLPVTCM
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 421 PVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGLLE 477
PVFPG FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WAGL E
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFE 477
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
Identities = 187/437 (42%), Positives = 266/437 (60%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++
Sbjct: 7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
A ++N V N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P
Sbjct: 65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
N D +C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K
Sbjct: 125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR
Sbjct: 177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ +
Sbjct: 237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295
Query: 345 DKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V
Sbjct: 296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355
Query: 402 QAYTMNTHMGK-LKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVG 460
Q TM+ HMGK ++P + +F +PL R+ T + RG +QLQR+G
Sbjct: 356 QGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMG 415
Query: 461 IGLAVSILSVIWAGLLE 477
IGL VSI ++I AG+LE
Sbjct: 416 IGLVVSIFAMITAGVLE 432
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 3.8e-93, Sum P(2) = 3.8e-93
Identities = 183/437 (41%), Positives = 258/437 (59%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T +++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+
Sbjct: 8 YTKDGT-LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMEN 65
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
+S +V+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P
Sbjct: 66 VSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP 125
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
C +C A + Q + LY+ G GI+PCVSSFGADQFD+ + K
Sbjct: 126 T---CSG-----ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR
Sbjct: 177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VA+ RK E + LYE S+I GS K+ HT
Sbjct: 237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFF 295
Query: 345 DKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V
Sbjct: 296 DKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVL 355
Query: 402 QAYTMNTHMG-KLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVG 460
Q T++ HMG K+P + +F VP R+ TGH RG +QLQR+G
Sbjct: 356 QGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIG 415
Query: 461 IGLAVSILSVIWAGLLE 477
IGL +SI S++ AG+LE
Sbjct: 416 IGLVISIFSMVSAGILE 432
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 8.9e-92, Sum P(2) = 8.9e-92
Identities = 186/449 (41%), Positives = 264/449 (58%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E N + G T ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 23 EEVNNHLT-GLSSTAEDGSIDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C ++ L C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITG 448
+V+ ++ TL VQQ +MN + ++P VF VP RR TG
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434
Query: 449 HPRGASQLQRVGIGLAVSILSVIWAGLLE 477
P+G + LQR+GIGL +S+LS+ A ++E
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVE 463
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
Identities = 175/431 (40%), Positives = 253/431 (58%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 468
+G +LP + F VPL R+ TG +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440
Query: 469 SVIWAGLLEFL 479
+ A ++E +
Sbjct: 441 CMAAAAIVEII 451
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 3.6e-82, Sum P(3) = 3.6e-82
Identities = 107/256 (41%), Positives = 156/256 (60%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++HG P + TG W A FIF NE ER+AY+G++ N++T+ +H++ ++ V
Sbjct: 31 IDIHGNPPLKQT-TGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G +ADAY GRYWTIA F+ IY G+ +TL A++ P + C
Sbjct: 90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAE--C-- 145
Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
+GS C PA Q L++ LY+ G GI+PCVSSFGADQFD+ + F
Sbjct: 146 ----IGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201
Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
FN+FY ++ +GA V+ T++V+IQ +GW F + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261
Query: 291 SPLTRVAQVLVAAFRK 306
SP+T V QVLVAA+RK
Sbjct: 262 SPITSVCQVLVAAYRK 277
|
|
| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 8.4e-79, Sum P(2) = 8.4e-79
Identities = 170/433 (39%), Positives = 247/433 (57%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G TG AT K+ C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I+ I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLA 464
TM ++G K+P + VF +P ++ G P G S LQR+ IGL
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLV 417
Query: 465 VSILSVIWAGLLE 477
+S + A L+E
Sbjct: 418 LSTAGMAAAALVE 430
|
|
| TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 161/429 (37%), Positives = 239/429 (55%)
Query: 56 GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL 115
G+P AD SKTGGW +A I E ER+ G+ VN+VT++ MH A ++N V NFL
Sbjct: 20 GRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFL 78
Query: 116 GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175
G S +LGGF+AD +LGRY TIAIF I G++ +TL + P + N S
Sbjct: 79 GTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH- 137
Query: 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235
CE A Q+ LY LY+T G G++ VS FG+DQFDE ++ + FFN F+
Sbjct: 138 ---CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194
Query: 236 LSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
+ VG+++A T++VY+Q + G WG A AI + +S +F GT YR + GSP+
Sbjct: 195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIGSPM 252
Query: 294 TRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
T+VA V+VAA+R R + S L + ++ ++KG K+ HT+ FR LDKAA+
Sbjct: 253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRD 312
Query: 352 KEDVINPS---PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E + + W L T+T VEEVK +VR++PI A I+ + + TLSV Q+ T++
Sbjct: 313 QEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDR 372
Query: 409 HMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 468
+G ++P M VF + LC+++ +P G LQR+G+GL +
Sbjct: 373 SIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSM 432
Query: 469 SVIWAGLLE 477
++ A L+E
Sbjct: 433 AMAVAALVE 441
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| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 159/429 (37%), Positives = 234/429 (54%)
Query: 54 VHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN 113
+HG+P + K GG I FIF NE+ E++A G NM++++ +H ++N + N
Sbjct: 16 LHGRP--NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72
Query: 114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173
F G S + +LG F+AD++ GR+WTI + IY G+T +T+ A + P + +
Sbjct: 73 FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV- 131
Query: 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233
C A + Q+ LY L + G+ GIRPCV +FGADQFDE + T +FN+
Sbjct: 132 -----CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNW 186
Query: 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
+Y + ++A T++V+IQ GWG G +AM +S + F G LYRH +P GSP
Sbjct: 187 YYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPF 246
Query: 294 TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKE 353
TR+ QV VAAFRKR S + LY + I GK+ HT LDKAA+ +E
Sbjct: 247 TRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEE 305
Query: 354 DVINPS--P--WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409
D + P P W+L TV +VEE+K+++R+ PI A I+L + T S+QQA TMN H
Sbjct: 306 DNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRH 365
Query: 410 M-GKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 468
+ ++P M VF FV + R+ TG RG + L R+GIG +SI+
Sbjct: 366 LTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISII 425
Query: 469 SVIWAGLLE 477
+ + AG +E
Sbjct: 426 ATLVAGFVE 434
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| TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 151/438 (34%), Positives = 240/438 (54%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G + S+TG W A F+ E+ ERMAY+G+S N+V +M +
Sbjct: 6 VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ADA+ GRY T I + IYL G+ +TL ++
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + C + + +CE A Q+ + LY G G +P +S+ GADQFDE
Sbjct: 124 GLKPPK--CSTAN--VENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
K H FFN++ S+ G A T++VY+Q GW +G + + S +F +GT
Sbjct: 180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
LYRH+LP GSP T++A+V+VA+ RK SS YE+P A K + I T
Sbjct: 240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDST-RFYELPPMEYASKRAFPIHSTSS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R L++A+L+ + W+LCT+T+VEE K +++++P+ T + +++L + +TL +
Sbjct: 299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354
Query: 401 QQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRV 459
+Q T++ + +P + F FV R++TG+PRG + LQR+
Sbjct: 355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRM 414
Query: 460 GIGLAVSILSVIWAGLLE 477
GIG+ + IL +I A + E
Sbjct: 415 GIGMILHILIMIIASITE 432
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYR6 | PTR49_ARATH | No assigned EC number | 0.7525 | 0.9690 | 0.8525 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.I.7989.1 | hypothetical protein (618 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 549 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 6e-49 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 1e-17 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 3e-15 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 5e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-04 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 6e-49
Identities = 100/408 (24%), Positives = 164/408 (40%), Gaps = 82/408 (20%)
Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
+ TI + + IY G +TL A P Q + Y LY
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40
Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
+ G GI+P VS+FGADQFDE + D FF++FY S+ G+++A + Y+Q
Sbjct: 41 LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97
Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
G+ FG A+ M ++ ++F +G+ Y+ + P GGSP T +A ++ AA + R
Sbjct: 98 VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157
Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373
LY K++ S HT A + + V ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LFDQQGSVWLLQ 207
Query: 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKL-KLPVTCMPVFPGLSIFLIL 432
++ ++PI A I+ + + T+ TL V+Q TM+ + L ++P F L++ ++L
Sbjct: 208 AILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILL 267
Query: 433 SLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVS-------------------------- 466
+ PL R RG + QR G+G+ +
Sbjct: 268 PILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSP 323
Query: 467 ----------------ILSVIWAGLLEFLYEEAPDAMKSIGSAYAALA 498
I V AG LEF + P +M S+ + +A A
Sbjct: 324 GWTVPLFILWSLPELFISGVGLAGALEFAPDALPSSMMSLWTLLSAAA 371
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-17
Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
IF E+ ER +Y+G+ ++ +++Y + ++ + + + + ++GG+LA
Sbjct: 26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85
Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
D LG TI + + G + + +
Sbjct: 86 DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119
Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
LY L + G +P +SS + + + D F FY+ + +G+++A +
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175
Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
+ + +GW FG A+ M I ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205
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Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 3e-15
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)
Query: 92 MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
M T + Y+++ + A N F + + ++G +AD++LG++ TI + +Y+
Sbjct: 6 MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65
Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
G +L A + P D L+G L + G GI+PC
Sbjct: 66 VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105
Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
VS+FG DQF+ER + RFF+FFY ++ G++ + + V + +
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162
Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
AFG I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
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[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
+F E+ ER +Y+G+ + ++ F+ + + + + +G + D
Sbjct: 15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
G T+ L GI L +LG A S +Y
Sbjct: 75 VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103
Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
+ Y G G+ + SS ++ + D F FY+S+ +G+ ++ L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
I +G+ F A+ M I + FF G + R
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197
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The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)
Query: 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
L +F + LS + + S + + V+ F S+L G+L+D
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
+ GR + + ++ G + A S +L +
Sbjct: 61 F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93
Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
L G G + P ++ A+ F + R F +GA++ L
Sbjct: 94 RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145
Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
+ GW F LAI + +L L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)
Query: 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
+ L + ++ + S + + F + L G L+D + GR + I
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
++ GL + + S +L + VL G G
Sbjct: 69 LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100
Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
+ P ++ AD F R +GA + L + GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
LAI ++ +L + P P LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
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Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.95 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.89 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.89 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.87 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.87 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.87 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.86 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.86 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.86 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.86 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.86 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.86 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.86 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.86 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.85 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.85 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.85 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.85 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.85 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.85 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.84 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.84 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.84 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.84 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.84 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.83 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.83 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.83 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.83 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.83 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.83 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.82 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.82 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.82 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.82 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.82 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.82 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.81 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.81 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.81 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.81 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.81 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.81 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.8 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.8 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.79 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.79 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.79 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.79 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.79 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.79 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.77 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.77 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.77 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.76 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.76 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.76 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.76 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.76 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.76 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.76 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.76 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.75 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.75 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.75 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.74 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.74 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.73 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.73 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.72 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.72 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.71 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.7 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.7 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.69 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.68 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.68 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.68 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.65 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.64 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.64 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.63 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.63 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.62 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.6 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.59 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.59 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.57 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.56 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.54 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.51 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.49 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.49 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.48 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.48 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.47 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.47 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.43 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.42 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.42 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.41 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.41 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.39 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.39 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.39 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.39 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.38 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.38 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.37 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.37 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.37 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.36 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.36 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.36 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.36 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.35 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.35 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.35 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.32 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.31 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.3 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.29 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.29 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.29 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.28 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.27 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.27 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.27 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.26 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.26 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.25 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.24 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.24 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.24 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.24 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.24 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.23 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.23 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.2 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.2 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.19 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.18 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.18 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.18 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.17 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.16 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.15 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.14 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.11 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.11 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.11 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.08 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.07 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.06 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.03 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.03 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.02 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.02 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.01 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.01 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.99 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.99 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.99 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.97 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.97 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.95 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.95 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.94 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.9 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.9 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.89 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.88 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.87 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.85 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.83 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.82 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.81 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.81 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.79 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.78 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.77 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.74 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.74 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.74 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.71 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.71 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.7 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.69 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.68 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.67 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.66 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.66 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.62 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.54 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.53 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.51 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.48 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.47 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.47 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.44 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.43 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.38 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.26 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.25 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.22 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.18 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.16 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.13 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.13 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.12 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.1 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.0 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.91 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.87 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.85 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.81 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.76 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.75 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.74 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.72 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.61 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.57 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.49 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.48 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.36 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.22 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.2 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.15 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.11 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 96.98 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.88 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.81 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.8 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.77 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.75 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.68 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.27 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 95.95 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.4 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.12 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 94.88 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 94.75 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.57 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.55 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.41 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.89 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 92.97 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 92.93 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.36 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.52 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 88.02 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 85.82 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 82.82 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 82.51 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-60 Score=510.43 Aligned_cols=481 Identities=43% Similarity=0.708 Sum_probs=435.5
Q ss_pred CcccccCCCccccc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHH
Q 008902 50 TPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG 126 (549)
Q Consensus 50 ~~~~~~~~p~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G 126 (549)
+..|+++++. .+. .++.|+++.+++..+.+|++++|++..++..|++.++|.+...+...++.|.+..++.+++++
T Consensus 16 ~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~ 94 (571)
T KOG1237|consen 16 TSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGA 94 (571)
T ss_pred ceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHH
Confidence 5566776666 554 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcccccc-ccCCCCCcchhhHHHHHHHHHHHHHhhcccc
Q 008902 127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ-LLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205 (549)
Q Consensus 127 ~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 205 (549)
++||.|+||++++.++.+++.+|..++.+.+..|.+.|. .| ..+ .+..|++|+..+...++.++.++++|.|+.+
T Consensus 95 ~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~--~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r 170 (571)
T KOG1237|consen 95 FLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC--KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR 170 (571)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc--cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence 999999999999999999999999999999988888886 44 111 2346999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccccccc
Q 008902 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (549)
Q Consensus 206 ~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~ 285 (549)
++..++.+|||++..+.++..+.++|+|+|+..++|..++-++..|++++.||.++|.++.+++++++++++.+.+.|++
T Consensus 171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~ 250 (571)
T KOG1237|consen 171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRY 250 (571)
T ss_pred CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEe
Confidence 99999999999988887777788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchHhhhhhhhccccc---CCCCCCc
Q 008902 286 RLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWK 362 (549)
Q Consensus 286 ~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~~~~~~~~---~~~~~~~ 362 (549)
++|.++|+.++.+|++++.++|+...+..+.. + . +........++.++.+++|+++++.+.+. ...++|+
T Consensus 251 ~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~-~-----~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~ 323 (571)
T KOG1237|consen 251 KKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L-Y-----YDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWR 323 (571)
T ss_pred eCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c-c-----ccccccccccCCcccchhhHhhccCCcccccccccCCcc
Confidence 99999999999999999999999887766544 3 1 11111123345667889999998765432 3467899
Q ss_pred cccchhHHHHHHhhhhchhhhHHHHHHHHHhhhhhHHHHHHHhcccCCCC-cccCCCccCchhHHHHHHHHHhhhhhhhh
Q 008902 363 LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVP 441 (549)
Q Consensus 363 ~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~~~g-~~~~~~~~~~i~~i~~ii~~p~~~~~~~~ 441 (549)
.|+.++|||.|++++++|+|.+.++++.++.|+.+.++.|+.+||+++++ +++|+++++.+..+.+++..|++|+++.|
T Consensus 324 lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP 403 (571)
T KOG1237|consen 324 LCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVP 403 (571)
T ss_pred CCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehh
Confidence 99999999999999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ccccccCCCCCCCchHHHHHHHHHHHHHHHHH------------------------------------------HHHHHH
Q 008902 442 LCRRITGHPRGASQLQRVGIGLAVSILSVIWA------------------------------------------GLLEFL 479 (549)
Q Consensus 442 l~rr~~~~~~~~~~l~~i~~G~~l~~~~~~~~------------------------------------------~~~~~~ 479 (549)
+.||.++++.+++.++|+++|+++.+++|..+ +.+||+
T Consensus 404 ~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFf 483 (571)
T KOG1237|consen 404 FARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFF 483 (571)
T ss_pred hhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 99999998888999999999999999998876 678999
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCC-CCCcccchhHHHHHHhc
Q 008902 480 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTDTSTGLSRSMAM 546 (549)
Q Consensus 480 ~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~v~~~t~~~~~~~~~W~~-~~~n~~~~~~~~~~~~~ 546 (549)
|+++|++||+.+++++.+..++|++++++++.++...|+ + ..+|++ +|+|++|+|||||+++.
T Consensus 484 Y~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~ 547 (571)
T KOG1237|consen 484 YSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAV 547 (571)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886 3 468999 99999999999999974
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=356.03 Aligned_cols=389 Identities=19% Similarity=0.279 Sum_probs=311.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC----CChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHH
Q 008902 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138 (549)
Q Consensus 63 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~----~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~ 138 (549)
..-++||.++.++.+|++||++|||+...+..|++.+++ ++.+++..+.+.|....++.+++|||+|||++|+|++
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 345688899999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 008902 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 139 i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
+..+.+++.+|.++++.+.. .....+++++.++++|.|+.+++..++++|++|+
T Consensus 95 I~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~ 148 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK 148 (498)
T ss_pred HHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence 99999999999999987620 2456789999999999999999999999999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccccccccC--CCCCchHH-
Q 008902 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLTR- 295 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~- 295 (549)
++++ |..+|+++|.+.|+|+.++|++.+++.+++||+.+|.++++.+.++++.++++++.+.... ++.+|+..
T Consensus 149 ~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~ 224 (498)
T COG3104 149 DDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFN 224 (498)
T ss_pred CCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhh
Confidence 9988 9999999999999999999999999999999999999999999999999999998876553 33333321
Q ss_pred -----HHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchH-hhhhhhhcccccCCCCCCccccchhH
Q 008902 296 -----VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRC-LDKAALELKEDVINPSPWKLCTVTQV 369 (549)
Q Consensus 296 -----~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~-l~~a~~~~~~~~~~~~~~~~~~~~~v 369 (549)
...+++...+.. -+.+.. .+..+. +............. ...+ ..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~--------~~~~l~----------------~~~~~~~~~~~~i~~~~~~~~-~~~~-~~~~~- 277 (498)
T COG3104 225 FLLPVLGGLVVMILAAL--------LTLLLN----------------QNTFSGVLLVISILIAIIYFA-EAFR-SPKVF- 277 (498)
T ss_pred hhhhhHHHHHHHHHHHH--------HHHHHH----------------HHHHHHHHHHHHHHHHHHHHH-HHhc-cCccH-
Confidence 111111111110 000000 000000 00000000000000 0000 01223
Q ss_pred HHHHHhhhhchhhhHHHHHHHHHhhhhhHHHHHHH-hcccCCCCcccCCCccCchhHHHHHHHHHhhhhhhhhccccccC
Q 008902 370 EEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 448 (549)
Q Consensus 370 ~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~-~~~~~~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~~~l~rr~~~ 448 (549)
+||||++..+++++..++||+++.|++|.+..++. ..|++..|+.+|++++|++|+++++++.|++++++.|+.++.
T Consensus 278 ~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-- 355 (498)
T COG3104 278 DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-- 355 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC--
Confidence 78999999999999999999999999998887764 556666679999999999999999999999999999988775
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHhhhccchhHHHHHH
Q 008902 449 HPRGASQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSA 493 (549)
Q Consensus 449 ~~~~~~~l~~i~~G~~l~~~~~~~~-----------------------------------~~~~~~~~~~P~~~rg~~~g 493 (549)
+.+++..|+++|+++++.++++. ..++.+++.+|+++.+.+||
T Consensus 356 --~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma 433 (498)
T COG3104 356 --KQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMA 433 (498)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHH
Confidence 24889999999999999988766 34566777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008902 494 YAALAGGLGCFAASILNSI 512 (549)
Q Consensus 494 ~~~~~~~lg~~~~~~l~~~ 512 (549)
.|.+....|+.++..+.+.
T Consensus 434 ~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 434 MWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred HHHHHHHHHHHhhceeccc
Confidence 9999999999888877663
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=314.58 Aligned_cols=381 Identities=15% Similarity=0.180 Sum_probs=288.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
+||+.++.+++.++++++++|++..+++.|+++.+|++..+++.+.+.+....+++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+++.... .+...++++..+.++|.|..+++.+++++|++|+++++
T Consensus 86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~--- 135 (493)
T PRK15462 86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR--- 135 (493)
T ss_pred HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence 999987665421 11233455666677888888999999999999987544
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccccccccC-CCCCchHH--HHH----
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLTR--VAQ---- 298 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~--~~~---- 298 (549)
|+++++++|...|+|++++|.+++++.++.||+++|+++++.++++++.++..++.+.+.. .+++|.++ ...
T Consensus 136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 214 (493)
T PRK15462 136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG 214 (493)
T ss_pred -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999998888888888877776654321 11222211 000
Q ss_pred HH-HH-----HHHhhhcccCccccccccccCCCcccccCCcccccCCcchHhhhhh-h--hcccccCCCCCCccccchhH
Q 008902 299 VL-VA-----AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA-L--ELKEDVINPSPWKLCTVTQV 369 (549)
Q Consensus 299 v~-~~-----a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~-~--~~~~~~~~~~~~~~~~~~~v 369 (549)
.+ .. ............ .. +.. ...+.-.. . ... .....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-------------------~~~~~~~~~~~~~~~------------~~~~~ 261 (493)
T PRK15462 215 WLLVLLVATPALITVLFWKEWS-VY-ALI-------------------VATIIGLGVLAKIYR------------KAENQ 261 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH-HHH-------------------HHHHHHHHHHHHHHH------------hcCCH
Confidence 00 00 000000000000 00 000 00000000 0 000 00123
Q ss_pred HHHHHhhhhchhhhHHHHHHHHHhhhhhHHHHHH-HhcccCCCCcccCCCccCchhHHHHHHHHHhhhhhhhhccccccC
Q 008902 370 EEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA-YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 448 (549)
Q Consensus 370 ~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~-~~~~~~~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~~~l~rr~~~ 448 (549)
+|+||+...+++++..++||..+.|.++.+...+ .++|++++|+++|++++|++|+++++++.|+..+++.++.||.
T Consensus 262 ~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~-- 339 (493)
T PRK15462 262 KQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN-- 339 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC--
Confidence 6789999999999999999999999999766554 6789999999999999999999999999999999987775442
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHH-------------------------H---------HHHHHhhhccchhHHHHHHH
Q 008902 449 HPRGASQLQRVGIGLAVSILSVIWA-------------------------G---------LLEFLYEEAPDAMKSIGSAY 494 (549)
Q Consensus 449 ~~~~~~~l~~i~~G~~l~~~~~~~~-------------------------~---------~~~~~~~~~P~~~rg~~~g~ 494 (549)
++++...|+++|+++.++++++. + .+..+.+.+|+++||++||+
T Consensus 340 --~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~ 417 (493)
T PRK15462 340 --RTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGI 417 (493)
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHH
Confidence 24789999999999999987655 2 22345567999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHh
Q 008902 495 AALAG-GLGCFAASILNSIIK 514 (549)
Q Consensus 495 ~~~~~-~lg~~~~~~l~~~v~ 514 (549)
|++.. .+|+.+++.+.....
T Consensus 418 w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 418 YMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 99855 799998888877653
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=310.21 Aligned_cols=388 Identities=15% Similarity=0.164 Sum_probs=291.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~ 142 (549)
.++++.++.+++.+++|++++|++.++++.|++++ +|++..+++.+.+.+.++.+++++++|+++||++|||+++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 46778899999999999999999999999999988 9999999999999999999999999999999955999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 008902 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
.+++.++.++++++ .+...+++++++.|+|.|+..++..++++|++|+++++
T Consensus 86 ~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~ 137 (475)
T TIGR00924 86 GIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP 137 (475)
T ss_pred HHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence 99999998888765 34566778899999999999999999999999876521
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHH-----
Q 008902 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA----- 297 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----- 297 (549)
.|+++++++|++.|+|++++|.+++++.++.||++.|+++++.++++++.++..++.+++.++++++.+...
T Consensus 138 ---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (475)
T TIGR00924 138 ---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGK 214 (475)
T ss_pred ---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHH
Confidence 188899999999999999999999999999999999999888777777777777766654443333221100
Q ss_pred H------HHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchHhhhhhhhcccccCCCCCCccccchhHHH
Q 008902 298 Q------VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEE 371 (549)
Q Consensus 298 ~------v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~ 371 (549)
+ .+....+.... ....... ... ......+...+..... .++ +.++ ++
T Consensus 215 ~~~~~~~~~~~~~~~~~~-~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~-~~~----~~~~-~~ 267 (475)
T TIGR00924 215 LLLALLAALALVFFCAWL-MHHVVIA---------------NIL-----LMTVTLAVIIFFFRLA-FKP----RLDA-VA 267 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-HhccHHH---------------HHH-----HHHHHHHHHHHHHHHH-Hhc----cCCH-HH
Confidence 0 00001110000 0000000 000 0000000000000000 000 0112 33
Q ss_pred HHHhhhhchhhhHHHHHHHHHhhhhhHHH-HHHHhcccCCCCcccCCCccCchhHHHHHHHHHhhhhhhhhccccccCCC
Q 008902 372 VKTLVRLVPIPACTIMLNVILTEFLTLSV-QQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHP 450 (549)
Q Consensus 372 ~k~~~~~l~~~~~~~~~~~~~~q~~t~~~-~~~~~~~~~~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~~~l~rr~~~~~ 450 (549)
+++...+++++++.+++|.++.|+.+.+. ++..++|++++++++|+++++++|++.+++++|+.++++.++.||..
T Consensus 268 ~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~--- 344 (475)
T TIGR00924 268 RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK--- 344 (475)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 44555678889999999999999999654 44566888888899999999999999999999999987766666521
Q ss_pred CCCCchHHHHHHHHHHHHHHHHH----------------------------------HHHHHHhhhccchhHHHHHHHHH
Q 008902 451 RGASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAA 496 (549)
Q Consensus 451 ~~~~~l~~i~~G~~l~~~~~~~~----------------------------------~~~~~~~~~~P~~~rg~~~g~~~ 496 (549)
.++...|+++|+++.+++++.. +..+++++.+|+++||+++|++.
T Consensus 345 -~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~ 423 (475)
T TIGR00924 345 -DPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWF 423 (475)
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3678889999999987776542 34567788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008902 497 LAGGLGCFAASILNSIIK 514 (549)
Q Consensus 497 ~~~~lg~~~~~~l~~~v~ 514 (549)
+...+|+++++.+.....
T Consensus 424 l~~~~g~~l~~~~~~~~~ 441 (475)
T TIGR00924 424 LAQAMGSLLGGYLATFGA 441 (475)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999887653
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=309.82 Aligned_cols=385 Identities=12% Similarity=0.168 Sum_probs=290.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHH
Q 008902 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 64 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~ 143 (549)
.++|||.++.+++.+++|++++|++..+++.|+++++|++.+++..+.+.+....++.++++|+++||++||||++.++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999569999999999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 008902 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 144 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
+++.++.++++++.. ....++++|.++++|.|..+++..++++|++|+++++
T Consensus 89 ~~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~- 140 (489)
T PRK10207 89 IVLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR- 140 (489)
T ss_pred HHHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh-
Confidence 999999998887521 1234667899999999999999999999999987633
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcccccccc--CCCCCchH--HHHHH
Q 008902 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT--RVAQV 299 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~--~~~~v 299 (549)
|++.++++|++.|+|+.++|.+++++.++.|||+.|++..+.+.++++.+...++.+++. ++++++.. .....
T Consensus 141 ---~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~ 217 (489)
T PRK10207 141 ---LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLV 217 (489)
T ss_pred ---hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHH
Confidence 688999999999999999999999999999999999998887777777777766655443 23232221 11100
Q ss_pred H------HHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchHhhhhhhhcccccCCCCCCccccchhHHHHH
Q 008902 300 L------VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373 (549)
Q Consensus 300 ~------~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~~k 373 (549)
. ..... ...+.. ++.. ... ......-......+. .+.++ .+++
T Consensus 218 ~~~~~~~~~~~~-~~~~~~-~~~~-~~~-----------------~~~~~i~~~~f~~~~----------~~~~~-~~r~ 266 (489)
T PRK10207 218 LLGSVVMIFVCA-WLMHNV-EVAN-LVL-----------------IVLSIVVTIIFFREA----------FKLDK-TGRN 266 (489)
T ss_pred HHHHHHHHHHHH-HHHhhh-hHHH-HHH-----------------HHHHHHHHHHHHHHH----------hcCCH-HHHH
Confidence 0 00000 000000 0000 000 000000000000000 01112 3456
Q ss_pred HhhhhchhhhHHHHHHHHHhhhhhHHHHHHH-hcccCCCCcccCCCccCchhHHHHHHHHHhhhhhhhhccccccCCCCC
Q 008902 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRG 452 (549)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~-~~~~~~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~~~l~rr~~~~~~~ 452 (549)
+.+..+.+++..+++|.++.|..+.+..+.. +++++..|+.+++++++++|++.++++.|+.+++++++.+|. .+
T Consensus 267 r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~----~~ 342 (489)
T PRK10207 267 KMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKG----KD 342 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC----CC
Confidence 6666777788899999999999887766654 567777789999999999999999999999998887776653 24
Q ss_pred CCchHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHhhhccchhHHHHHHHHHH
Q 008902 453 ASQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSAYAAL 497 (549)
Q Consensus 453 ~~~l~~i~~G~~l~~~~~~~~-----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~ 497 (549)
+++..|+++|+++.+++++.+ ...+++++.+|++++|.++|++++
T Consensus 343 ~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l 422 (489)
T PRK10207 343 LSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFL 422 (489)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 789999999998887776421 335677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008902 498 AGGLGCFAASILNSIIK 514 (549)
Q Consensus 498 ~~~lg~~~~~~l~~~v~ 514 (549)
...+|+.++..+...+.
T Consensus 423 ~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 423 TQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998887664
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=312.74 Aligned_cols=334 Identities=24% Similarity=0.427 Sum_probs=282.5
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008902 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 83 ~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~ 162 (549)
++|||+.+.+..|+++.+|++.+.+..+...+....++.+++||+++|+++||++++.++.+++.+|.+++++....+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998875331111
Q ss_pred cCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 008902 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (549)
++ .+...+++++.++++|.|+.++|..++++||+++++. +.|.++|+|+|+++|+|+
T Consensus 81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGS 137 (654)
T TIGR00926 81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGS 137 (654)
T ss_pred cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHH
Confidence 11 2345577889999999999999999999999986442 238999999999999999
Q ss_pred HHHHHHHHHHhhhh-------chhHHHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhhhcccCccc
Q 008902 243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE 315 (549)
Q Consensus 243 ~i~~~i~~~l~~~~-------gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~ 315 (549)
.+++++.+++.+.. +|.++|.+++++++++++++..+++.++++++.++++.+.+++++.+.|+++...++.
T Consensus 138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~- 216 (654)
T TIGR00926 138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH- 216 (654)
T ss_pred HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-
Confidence 99999999998553 6999999999999999999999999998888889998888999888887653211100
Q ss_pred cccccccCCCcccccCCcccccCCcchHhhhhhhhcccccCCCCCCccccchhHHHHHHhhhhchhhhHHHHHHHHHhhh
Q 008902 316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF 395 (549)
Q Consensus 316 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~ 395 (549)
...+|+|+++.+. ..++++++|++++++++++..++||..+.|+
T Consensus 217 -----------------------~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~ 260 (654)
T TIGR00926 217 -----------------------WPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ 260 (654)
T ss_pred -----------------------cchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0124566554332 1346789999999999999999999999999
Q ss_pred hhHHHHHHHhcccCCCCcccCCCccCchhHHHHHHHHHhhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 008902 396 LTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGL 475 (549)
Q Consensus 396 ~t~~~~~~~~~~~~~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~~~l~rr~~~~~~~~~~l~~i~~G~~l~~~~~~~~~~ 475 (549)
.+.+..|+.+|+.+++++.+|+++++++|++.++++.|++++.+.|..+|++. .+++++|+++|++++++++++++.
T Consensus 261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ 337 (654)
T TIGR00926 261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAAL 337 (654)
T ss_pred hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888999999999999999999999999888888777543 378999999999999999988755
Q ss_pred HHHH
Q 008902 476 LEFL 479 (549)
Q Consensus 476 ~~~~ 479 (549)
.|.-
T Consensus 338 ve~~ 341 (654)
T TIGR00926 338 VQLK 341 (654)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=292.48 Aligned_cols=380 Identities=14% Similarity=0.183 Sum_probs=283.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
++++.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+....+..++++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56678999999999999999999999999999999999999988888888888888889999999955999999999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.++.++++++. .+...++++++++|+|.|...++..++++|++|+++++
T Consensus 98 ~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~--- 147 (500)
T PRK09584 98 LAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR--- 147 (500)
T ss_pred HHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh---
Confidence 999988877641 13456678889999999999999999999999876533
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcccccccc--CCCCCchH--H----HH
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT--R----VA 297 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~--~----~~ 297 (549)
|+.+++++|++.|+|+.++|.+.+++.++.||++.|++.++.++++++.+++.++.+++. ++++++.. . ..
T Consensus 148 -~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (500)
T PRK09584 148 -LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIV 226 (500)
T ss_pred -hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHH
Confidence 667889999999999999999999999999999999998887777776666655444332 23222221 1 11
Q ss_pred HHHHHHHHhhhc-ccCccccccccccCCCcccccCCcccccCCcchHhhhhhhhcccccCCCCCCccccchhHHHHHHhh
Q 008902 298 QVLVAAFRKRHA-AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV 376 (549)
Q Consensus 298 ~v~~~a~~~~~~-~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~v~~~k~~~ 376 (549)
.+.......... ..++..+. . +............... +..++ .++++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~ 276 (500)
T PRK09584 227 GVVALIAIATWLLHNQEIARM-A---------------LGVVALGIVVIFGKEA-------------FAMKG-AARRKMI 276 (500)
T ss_pred HHHHHHHHHHHHHhcchHHHH-H---------------HHHHHHHHHHHHHHHH-------------hhcCH-HHHHHHH
Confidence 111111111000 00000000 0 0000000000000000 11122 4566666
Q ss_pred hhchhhhHHHHHHHHHhhhhhHHHHHHH-hcccCCCCcccCCCccCchhHHHHHHHHHhhhhhhhhccccccCCCCCCCc
Q 008902 377 RLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQ 455 (549)
Q Consensus 377 ~~l~~~~~~~~~~~~~~q~~t~~~~~~~-~~~~~~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~~~l~rr~~~~~~~~~~ 455 (549)
..+++++..++||.++.|+++.+..|+. ++++++.|+.+|+++++++|++.++++.|+.++++.++.+| +..
T Consensus 277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~ 349 (500)
T PRK09584 277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPM 349 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCc
Confidence 7778888899999999999999888764 46667778899999999999999999999999887666555 357
Q ss_pred hHHHHHHHHHHHHHHHHH----------------------------------HHHHHHhhhccchhHHHHHHHHHHHHHH
Q 008902 456 LQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGGL 501 (549)
Q Consensus 456 l~~i~~G~~l~~~~~~~~----------------------------------~~~~~~~~~~P~~~rg~~~g~~~~~~~l 501 (549)
.+++++|+++.+++++.. ...+++++.+|+++||+++|++.+..++
T Consensus 350 ~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~ 429 (500)
T PRK09584 350 PHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAG 429 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 789999999998887662 2345677889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008902 502 GCFAASILNSII 513 (549)
Q Consensus 502 g~~~~~~l~~~v 513 (549)
|+.++..+...+
T Consensus 430 g~~~~g~~~~~~ 441 (500)
T PRK09584 430 AALIAGYVANLM 441 (500)
T ss_pred HHHHHHHHHHHh
Confidence 999998887654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=249.62 Aligned_cols=301 Identities=33% Similarity=0.506 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhcc
Q 008902 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 215 (549)
Q Consensus 136 ~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~ 215 (549)
+|+++++.+++++|++++++++..+... ++.+...++++++++++|.|+.+||+.++++||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~-------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLP-------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhh-------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 5899999999999999988876532221 124567899999999999999999999999999
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcccccccc-CCCCCchH
Q 008902 216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT 294 (549)
Q Consensus 216 ~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~ 294 (549)
++++++ ..|.++|+++|+++|+|+.+++.+.+++++++||.++|+++.+++++++++++.+++.|+++ ++.++++.
T Consensus 62 ~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~ 138 (372)
T PF00854_consen 62 YDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT 138 (372)
T ss_dssp SSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred hcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence 998731 23999999999999999999999999999999999999999999999999999999999888 78888888
Q ss_pred H-HHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchHhhhhhhhcccccCCCCCCc-cccchhHHHH
Q 008902 295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV 372 (549)
Q Consensus 295 ~-~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~v~~~ 372 (549)
+ ...++..+.+++....|....+ +.......+.. .. .........+....... ..|. .++++++++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 207 (372)
T PF00854_consen 139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYSER----SI--FGIIVFIRAAVIFFPEI----FFWALFCQVQRVEEL 207 (372)
T ss_dssp --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHCCC----CC--CCCCCHHHHHHHHCCCH----HHHTTTSSTTTHHHC
T ss_pred hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhhhh----hh--hhhhhhccchhhhhhhh----hhcccCCccceeeee
Confidence 8 5566666677776655433332 21110000000 00 00000111111100000 0011 1345677888
Q ss_pred HHhhhhchhhhHHHHHHHHHhhhhhHHHHHHHhcccCCCC-cccCCCccCchhHHHHHHHHHhhhhhhhhccccccCCCC
Q 008902 373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPR 451 (549)
Q Consensus 373 k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~~~g-~~~~~~~~~~i~~i~~ii~~p~~~~~~~~l~rr~~~~~~ 451 (549)
|.+.+.++.+.+.++++.++.|..+....|...+|+.+++ +++|+++++++|.++++++.|+++++++|+.|+. +
T Consensus 208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~----~ 283 (372)
T PF00854_consen 208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRG----I 283 (372)
T ss_dssp CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhc----c
Confidence 9999999999999999999999888888888888888888 8999999999999999999999999999999832 2
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q 008902 452 GASQLQRVGIGLAVSILSVIWA 473 (549)
Q Consensus 452 ~~~~l~~i~~G~~l~~~~~~~~ 473 (549)
.++.+.|+++|+++..+++++.
T Consensus 284 ~~~~~~k~~~G~~~~~~~~~~~ 305 (372)
T PF00854_consen 284 QPSPPQKFGIGMVFAILAMFVA 305 (372)
T ss_dssp ----HHHHHHH-HHHHHHHHTT
T ss_pred cchhhhhhhHHHHHHHHHHHHH
Confidence 4789999999999988887765
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=229.85 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=140.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
+|..+..+.+..++..+... +...+..++.++++++..+.+++.+++.++..++.+++|+++||+ |||++++++.++.
T Consensus 165 ~~~l~~i~~l~~~~~g~d~~-~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~ 242 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEVF-VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 44444444444444444443 344456677889999999999999999999999999999999997 9999999999988
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.++++++ .+...++++|++.|+|.|+..+...++++|.+|.+.
T Consensus 243 ~i~~ll~afa----------------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------ 288 (742)
T TIGR01299 243 GFFAFFSSFV----------------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------ 288 (742)
T ss_pred HHHHHHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 8888777765 467888999999999999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hchhHHHHHHHHHHHHHHHHHH
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~-------------~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
|+..++++.....+|.++++.++..+... .+||+.|++.++..++.+++.+
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT 352 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877665533 3589888887776655554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-21 Score=205.86 Aligned_cols=181 Identities=14% Similarity=0.102 Sum_probs=136.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----cCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~ 140 (549)
.+++.+..+.+..+...+....+....+. +..+ .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.
T Consensus 13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~ 90 (502)
T TIGR00887 13 QHFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYG 90 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH
Confidence 44556666666667766666444444443 3332 234555667889999999999999999999997 9999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 008902 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 141 i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
++.+++.++.++.+++... .+ ..+...++++|++.|++.|+..+..+.+++|.+|++.
T Consensus 91 ~~~~~~~v~~~~~~~~~~~---~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~ 148 (502)
T TIGR00887 91 MELIIMIIATVASGLSPGS---SP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW 148 (502)
T ss_pred HHHHHHHHHHHHHHHccCc---cc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh
Confidence 9999999988877764110 00 0236788999999999999999999999999999998
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------hhchhHHHHHHHHHHHHHHHHH
Q 008902 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~-----------------------~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
|+++.++++....+|..+++.+...+.. ..+||+.|.+.++..++.++..
T Consensus 149 ------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 149 ------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887765432 2379999987776665544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-20 Score=194.57 Aligned_cols=175 Identities=13% Similarity=0.197 Sum_probs=150.8
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHH
Q 008902 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 63 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~ 142 (549)
..+.+|+.+....+..+...+..+.+... ...+.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV-LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 34567888888888888888888766555 4567889999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 008902 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (549)
Q Consensus 143 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (549)
.++..++.+++.+. .+...++++|++.|++.+...+...+++.|.+|+++
T Consensus 84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-- 133 (405)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence 99888888777664 467788899999999999999999999999999887
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc--hhHHHHHHHHHHHHHH
Q 008902 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISN 273 (549)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g--w~~~f~i~~~~~~~~~ 273 (549)
|++..++++.+.++|..+++.+.+.+.+..+ |++.|++.++..++.+
T Consensus 134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887766 9999987665544443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-20 Score=196.64 Aligned_cols=184 Identities=16% Similarity=0.153 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc--------CCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--------HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l--------~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i 139 (549)
.+.++...+..+...+....+... ...+++.+ +.+..+.+++.+.+.++..++++++|+++||+ |||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~ 88 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGT-VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHh-HHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence 444555555555544444333332 23344544 88889999999999999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh-ccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 008902 140 AIFTTIYLAGLTGITLCATM-KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 140 ~i~~~~~~ig~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
.++.+++.++.+..++.... .... .++......++++|++.|++.|+..+...++++|.+|+
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~ 151 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIG-----------------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA 151 (479)
T ss_pred HHHHHHHHHHHHHHHhhcccccccc-----------------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh
Confidence 99999998887776653110 0000 00113456788999999999999999999999999998
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hhhchhHHHHHHHHHHHHHHHHH
Q 008902 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~--------~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
++ |+..++++..+..+|..+++.++..+. +..|||+.|++.++..++..+..
T Consensus 152 ~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 152 HI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred hh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH
Confidence 88 999999999999999999887765543 34689999998776666554443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=190.23 Aligned_cols=177 Identities=15% Similarity=0.085 Sum_probs=150.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
.+|+.++..++..+++.+....+... ...+++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFA-GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHH-HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence 35767777777777777777555544 4589999999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.++.++.+++ .+...++++|++.|++.++..+....+++|.+|+++
T Consensus 83 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----- 129 (412)
T TIGR02332 83 WGIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF----- 129 (412)
T ss_pred HHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH-----
Confidence 99998888775 467888999999999999999998899999999877
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh------hhchhHHHHHHHHHHHHHHHHHHh
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~------~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
|++..++++.+..+|..+++.+++++.+ ..|||+.|++.++..++..++..+
T Consensus 130 -rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 130 -RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998864 368999999877666554444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-19 Score=192.86 Aligned_cols=179 Identities=15% Similarity=0.063 Sum_probs=151.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
+|..+..+.+..++..+....+...+| .+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 566778888888888888866666655 45678999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccC-CCCCchhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF-DERSKDYKT 225 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~-~~~~~~~~~ 225 (549)
.++.++++++ .+...++++|+++|+|.++..+.....+.+.+ |+++
T Consensus 82 ~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~----- 128 (495)
T PRK14995 82 GLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ----- 128 (495)
T ss_pred HHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-----
Confidence 9999988876 47788999999999999998888888787777 4455
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccc
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~ 281 (549)
|+++++++....++|..++|.+++++.++.|||+.|++.....++.+++.....+
T Consensus 129 -r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 129 -RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999876665555544444333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-19 Score=182.61 Aligned_cols=173 Identities=17% Similarity=0.080 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~ 153 (549)
++...++..++.......++.|.. +++.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 455666666666566666677765 5888999999999999999999999999999997 99999999998888777776
Q ss_pred HhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 008902 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
.+.... + ..+...++++|++.|++.+...+...++++|.+|+++ |++.+++
T Consensus 82 ~~~~~~----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (365)
T TIGR00900 82 PFVALL----G-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL 132 (365)
T ss_pred HHHHHc----C-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence 655210 0 0267888899999999999999999999999999877 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
++.+.++|..++|.+++++.+..||++.|++.++..+++.+..+
T Consensus 133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887776655554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-19 Score=188.51 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=144.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
.+|+.+....+..+...+..+.. ..+..++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence 44556666677777777777544 4456677889999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.++..++ .+...++++|++.|++.+...+....++.|.+|+++
T Consensus 93 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~----- 139 (426)
T PRK12307 93 YSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL----- 139 (426)
T ss_pred HHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH-----
Confidence 99988887765 467889999999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~ 268 (549)
|+++.++++.+..+|..+++.+.+++.+..+||+.|++.++.
T Consensus 140 -r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 140 -KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred -hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 999999999999999999999999998889999999875543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-19 Score=187.61 Aligned_cols=176 Identities=17% Similarity=0.165 Sum_probs=149.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
+.+|..+....+..+++.+..+......+ .+.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence 46777778888888888888876665544 55678999999999999999999999999999999997 99999999998
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.+. .+...+++.|++.|++.+...+...++++|.+|+++
T Consensus 89 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 136 (406)
T PRK11551 89 LFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL---- 136 (406)
T ss_pred HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH----
Confidence 888877766654 466788899999999999999999999999999887
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
|++.+++++...++|+.+++.+++.+.+..+|++.|++.+++.++..++.
T Consensus 137 --r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 137 --RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888899999988776555544433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-19 Score=184.78 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=146.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
++|..++.+.+..++.....+.....+ ..+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 356556666666666544444333333 466789999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+.+.++ ++...++++|++.|++.+...+...+++.|++|+++
T Consensus 84 ~~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~----- 130 (390)
T PRK03545 84 FIASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK----- 130 (390)
T ss_pred HHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh-----
Confidence 99988887765 467889999999999999888999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
|++.++++..+.++|..++|.+++.+.+..|||+.|++.++..++..+..
T Consensus 131 -r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 131 -KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred -hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998999999998877665554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=190.46 Aligned_cols=174 Identities=15% Similarity=0.131 Sum_probs=149.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
.+|+++.+....++..++++.+.++++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence 345678888889999999999999999999999999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++.+. ++...+++++.+.+.+.+...++..+..+|.+|+++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (395)
T PRK10054 84 ASGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------ 129 (395)
T ss_pred HHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------
Confidence 8887776654 355666677777777777777888899999999877
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
|++.+++.+...++|..++|.+++++.+ .+|+..|++.+++.++.++..
T Consensus 130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875 789999998877766665443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=191.19 Aligned_cols=168 Identities=10% Similarity=0.040 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
..+..++..++..+..+.+...++.+ .+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence 44444555555555555555555555 567999999999999999999999999999999997 9999999999999888
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.++ .+...+++.|++.|++.|...+...++++|++|+++ |++
T Consensus 102 ~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~ 147 (434)
T PRK11663 102 NILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGG 147 (434)
T ss_pred HHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHH
Confidence 8877665 467778888999999999888999999999999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~ 273 (549)
.+++++.+.++|..++|.+.+++.+..|||+.|++.++..++..
T Consensus 148 ~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 148 WWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG 191 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988776554443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-19 Score=186.63 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=129.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc--CCChhHHHHHH-----HHHHHHHHHHHhHHHHHhhhhcchhHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRYWT 138 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l--~~s~~~a~~~~-----~~~~~~~~~~~l~~G~laDr~~GR~~~ 138 (549)
.+++.+...++..+++.+....+....+.++.+++ +.++.. +.+. +...++..++.++.|+++||+ |||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~ 96 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence 34566777777778887777655555555666655 666653 3332 233345567788889999997 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 008902 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 139 i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
+.++.+++.++.++++++....... ......+++.|++.|++.|+..+....++.|.+|+
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 156 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIG--------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK 156 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHH--------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC
Confidence 9999999999998888762100000 01123578899999999999999999999999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hhhchhHHHHHHHHHH
Q 008902 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAM 269 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~--------~~~gw~~~f~i~~~~~ 269 (549)
++ |+...+..+.+..+|..++..+..++. +..|||+.|++.++..
T Consensus 157 ~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 157 NK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred CC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 88 998888888888888888877766654 2479999998876654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-19 Score=186.06 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=135.6
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcc
Q 008902 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 170 (549)
....++.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~-------------- 79 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA-------------- 79 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH--------------
Confidence 344568889999999999999999999999999999999997 99999999999988888887765
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008902 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~ 250 (549)
.+...++++|++.|++.+...+....++.|.+|+++ |++.+++++...++|..+++.+.+
T Consensus 80 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 80 --------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred --------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHH
Confidence 467888999999999999999999999999999877 999999999999999999999999
Q ss_pred HHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 251 YIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 251 ~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
++.+..+|++.|++.++..++..+..+.
T Consensus 140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 140 WILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999877766655554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=187.23 Aligned_cols=175 Identities=18% Similarity=0.133 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH-HH----H-HHHHHHHHHHHHHhHHHHHhhhhcchhHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SS----N-AVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~-a~----~-~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i 141 (549)
++.++...+..+++.+.+. +..+...++.++++.+... .. . +.++..++..++.+++|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 4456666777888888775 4555566888887643321 11 1 24667788899999999999997 99999999
Q ss_pred HHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 008902 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (549)
Q Consensus 142 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (549)
+.+++.++.++++++.....+. -....+++++|+++|+|.|+..+...++++|.+|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence 9999999999988762100000 0011247889999999999999999999999999988
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hhhchhHHHHHHHHHHH
Q 008902 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (549)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~--------~~~gw~~~f~i~~~~~~ 270 (549)
|+...++...+..+|..+++.+...+. .++|||+.|++.++..+
T Consensus 152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 999988888888888887776654432 25799999998665433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-19 Score=182.50 Aligned_cols=167 Identities=20% Similarity=0.262 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Q 008902 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~ 154 (549)
++..++..+....+...++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4556666777766666666688999999999999999999999999999999999997 999999999999998855555
Q ss_pred hhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 008902 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (549)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (549)
++ .+...+++++++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~ 126 (352)
T PF07690_consen 81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL 126 (352)
T ss_dssp HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence 43 244588899999999999999999999999999988 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 235 ~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
+...++|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 999999999999999999988999999999888887776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-20 Score=191.57 Aligned_cols=329 Identities=16% Similarity=0.100 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhH
Q 008902 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (549)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (549)
+.+++++.++.++|..++|+++||+ |||.+++++.++.+++.+++.++... ...
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~ 116 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF 116 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence 5678889999999999999999997 99999999999999888888776331 467
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHH-hhhhchhHHHHHH
Q 008902 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VYI-QMEHGWGSAFGAL 265 (549)
Q Consensus 188 ~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~-~~l-~~~~gw~~~f~i~ 265 (549)
.++.++|++.|+..|......+.++.|..|.+- ||..-.+..++.++|-.++..++ ..+ .+...|++.+.+.
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 889999999999999999999999999999998 99998889999999999986554 333 3445699999988
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhhhcccCccccccccc-cCCCcccccCCcccccCCcchHh
Q 008902 266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHTDDFRCL 344 (549)
Q Consensus 266 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~-~~~~~~a~~~~~~~~~~~~~~~l 344 (549)
.+..++.++.+.+ +||||+| +.. +++++||++.+++++..++....
T Consensus 191 ~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~~~~~~~ 237 (485)
T KOG0569|consen 191 LIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGKEDVEAE 237 (485)
T ss_pred HHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence 8887777776654 6999999 887 78999999988888765543322
Q ss_pred hhh---hhhccccc--CCCCCCccccchhHHHHHHhhhhchhhhHHHHHHHHHhhhhhHHHHHHHhcccCCCCcccCCCc
Q 008902 345 DKA---ALELKEDV--INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419 (549)
Q Consensus 345 ~~a---~~~~~~~~--~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~~~g~~~~~~~ 419 (549)
+++ ..+.+... .....++.++.. ..|+.+...+.+.++++.........+++.+....++... .+.+
T Consensus 238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~--~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~------~a~~ 309 (485)
T KOG0569|consen 238 IEEMLREIEEEELEKKKQISLRQLLKNP--TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE------EAQY 309 (485)
T ss_pred HHHHHHHHHHhccccccCCcHHHHhcCc--chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH------HHHH
Confidence 211 11111000 111112222211 1233332233332333322222222222333322222211 1223
Q ss_pred cCchhHHHHHHHHHhhhhhhhhccccccCCCCCCCchHHHHHHHHH-HHHHHHHH-------------------------
Q 008902 420 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAV-SILSVIWA------------------------- 473 (549)
Q Consensus 420 ~~~i~~i~~ii~~p~~~~~~~~l~rr~~~~~~~~~~l~~i~~G~~l-~~~~~~~~------------------------- 473 (549)
.+....+..++...+...++|+++|| ++..++.++.. ..+.+...
T Consensus 310 an~~~g~v~~~~t~~~~~lid~~gRR---------pLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 310 ANLGIGIVNLLSTLVSPFLIDRLGRR---------PLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 33333444455555666667777776 22222221111 11111111
Q ss_pred -----HHHHH--HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008902 474 -----GLLEF--LYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 518 (549)
Q Consensus 474 -----~~~~~--~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~v~~~t~ 518 (549)
++..| ..+.+|.+-|+.++++..+.+++++++..+..+.+.+..|
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g 432 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG 432 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12222 2456899999999999999999999999999999988776
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=188.31 Aligned_cols=174 Identities=16% Similarity=0.130 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
....+.+..++..+....+.. ...++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNV-AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 345555666666666644444 45566788999999999999999999999999999999997 9999999999999998
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..+ .+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 81 ~~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 126 (485)
T TIGR00711 81 SLLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGR 126 (485)
T ss_pred HHHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHH
Confidence 8887765 467888999999999999999999999999999877 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
++++++....+|..++|.+++++.++.+|++.|++.+...++..++....
T Consensus 127 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 176 (485)
T TIGR00711 127 AMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFI 176 (485)
T ss_pred HHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998776655555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-18 Score=184.89 Aligned_cols=176 Identities=12% Similarity=0.024 Sum_probs=150.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
.+.++.+.+..++..+..+.+...++.|. +++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 34677888888888888888888888776 46999999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.+. .+...++++|++.|++.+...+...+.+.|.+|+++ |
T Consensus 87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~ 132 (471)
T PRK10504 87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y 132 (471)
T ss_pred HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence 877766554 356778889999999999999999999999999776 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
++.+++++...++|..++|.+++++.+..||++.|++......+..+.....
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998776655555544443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-18 Score=178.48 Aligned_cols=175 Identities=10% Similarity=-0.048 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
+.+..+.+..+...++.......++.|+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~ 93 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCAL 93 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHHH
Confidence 4677778888888888877888899999999999999999999999999999999999999997 999999999998888
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+.+.++...... ...+...+++.|++.|++.+...++...++.|.+|+++ |+
T Consensus 94 ~~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~ 147 (399)
T PRK05122 94 SGLLYLLAGLLAAW--------------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TG 147 (399)
T ss_pred HHHHHHHhhhhhcc--------------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hc
Confidence 77666554211000 00245678899999999999999999999999999888 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~ 270 (549)
+.++++..+.++|..+++.+++++.+..||++.+++.++..+
T Consensus 148 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 148 RVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999998899999999999999999999999988876555433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-18 Score=178.00 Aligned_cols=171 Identities=13% Similarity=0.035 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++.+.+..++..++.....+.++.|+.+++|.|..+.+.+.+.+.++..++.++.|+++||+ ||||++.++.++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA 94 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence 455566666676777766777888899999999999999999999999999999999999997 9999999998877766
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+...+....+... ..+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 95 ~~~~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (392)
T PRK12382 95 GLAYLLAAILPVSA--------------------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK 148 (392)
T ss_pred HHHHHhhhccccch--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence 54433321111000 1367788999999999999888888889999999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~ 267 (549)
+++++..+.++|..++|.+++++.+..||++.+.+..+
T Consensus 149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~ 186 (392)
T PRK12382 149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMV 186 (392)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 99999999999999999999999888999987665443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=180.51 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=121.5
Q ss_pred HHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCC
Q 008902 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (549)
Q Consensus 89 ~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~ 168 (549)
.......+.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++..+.+....+.+ .....
T Consensus 10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~----------- 76 (368)
T TIGR00903 10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP----------- 76 (368)
T ss_pred HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh-----------
Confidence 33445566789999999999999999999999999999999997 999887655544444332 21110
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008902 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (549)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i 248 (549)
.+...++++|++.|+|.+.. .+.....+|.+|+++ |++.+++.+.+..+|..+++++
T Consensus 77 ----------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~ 133 (368)
T TIGR00903 77 ----------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAA 133 (368)
T ss_pred ----------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999864 455556689999877 9999999999999999999999
Q ss_pred HHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 249 VVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 249 ~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
++++.+..|||+.|++.++..++..++.+
T Consensus 134 ~~~l~~~~gWr~~f~~~~~l~~~~~~~~~ 162 (368)
T TIGR00903 134 GLKIYTAGGLQLLIIPIAAVAAAGIILVL 162 (368)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999886666555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=181.72 Aligned_cols=177 Identities=16% Similarity=0.190 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC---CChhHHHH---HHHHHHHHHHHHHhHHHHHhhhhcchhHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSN---AVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~---~s~~~a~~---~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i 141 (549)
++.+....+..+++.+.+.. ...+..++.++++ .+..+.+. +.+...++..++.+++|+++||+ |||+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~ 98 (432)
T PRK10406 21 IWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHH
Confidence 33455555667777777754 5556678888874 44544333 33344455558999999999997 99999999
Q ss_pred HHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 008902 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (549)
Q Consensus 142 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (549)
+.+++.++.++++++....... ......+++.|+++|+|.|+..+...++++|.+|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~- 157 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR- 157 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc-
Confidence 9999999998887752100000 0124568899999999999999999999999999888
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hhhchhHHHHHHHHHHHHH
Q 008902 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~--------~~~gw~~~f~i~~~~~~~~ 272 (549)
|+.+.++.+.+.+.|..+++.+...+. ..+|||+.|++.++..++.
T Consensus 158 -----rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 158 -----KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 999999888888888888887655443 2579999999876655443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-18 Score=179.48 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~ 151 (549)
++++...++..++.+.+.+.++.|+++++|++..+.+.+.+...+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5567888888999999999999999999999999999999999999999999999999997 999999999999998888
Q ss_pred HHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 008902 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++... ++.+.+++.+++.|++.+...+...+.+.|.+|+++ |++++
T Consensus 92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~ 137 (400)
T PRK11646 92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF 137 (400)
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 77654 356778889999999998888889999999999877 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q 008902 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~ 275 (549)
++.+...++|..++|.+++++. ..+|++.|++.++..++..++
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 679999999877665555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=177.91 Aligned_cols=156 Identities=14% Similarity=0.057 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccC
Q 008902 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (549)
Q Consensus 85 ~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~ 164 (549)
.|... .+..++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 19 ~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~-------- 88 (377)
T TIGR00890 19 VYTWT-LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA-------- 88 (377)
T ss_pred Hhhhh-hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH--------
Confidence 44444 456688899999999999999999999999999999999997 99999999999999998887776
Q ss_pred CCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 008902 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (549)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i 244 (549)
.+...++++|++.|++.+...+.......+.+| ++ |+...+++..+.++|..+
T Consensus 89 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~ 141 (377)
T TIGR00890 89 --------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFI 141 (377)
T ss_pred --------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhH
Confidence 577888899999999999887777788888886 45 888999999999999888
Q ss_pred HHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 245 ~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
++.+.+.+.+..+||+.|++.++..++..+..+
T Consensus 142 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 142 LSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 777777777778999999987776655554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-18 Score=176.23 Aligned_cols=174 Identities=16% Similarity=0.129 Sum_probs=143.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
.+|+.+...++..+...+..+... ....++.+++|.+..+.+.+.+...++..++.++.|+++||+ |||+++.++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~ 91 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMG-FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILL 91 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHH
Confidence 445556666666666655554433 445567788999999999999999999999999999999997 999999999988
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+++.+. .+...+++.+++.|++.+...+...++++|.+|+++
T Consensus 92 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 138 (398)
T TIGR00895 92 FSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF----- 138 (398)
T ss_pred HHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh-----
Confidence 88887776654 356778889999999999999999999999999877
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~ 275 (549)
|++.+++++.+.++|..+++.+.+++.+..+|++.|++.++...+..++
T Consensus 139 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 187 (398)
T TIGR00895 139 -RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL 187 (398)
T ss_pred -hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999998875444444333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=192.38 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=126.9
Q ss_pred HHhhHhcCCC---hhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcc
Q 008902 94 TFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 94 ~yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 170 (549)
.-+.++++++ ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.+++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~-------------- 177 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS-------------- 177 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence 3467789998 88899999999999999999999999997 99999999999988888777765
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008902 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~ 250 (549)
.++..++++|++.|++.++..+...+++.|.+|+++ |+...+++..+..+|..+++.++.
T Consensus 178 --------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 237 (505)
T TIGR00898 178 --------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAY 237 (505)
T ss_pred --------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999888 999999988899999999998876
Q ss_pred HHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 251 YIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 251 ~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
.+.+ ||+.|++.++..++..+..+
T Consensus 238 ~~~~---wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 238 FIPD---WRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred HhhH---HHHHHHHHHHHHHHHHHHHH
Confidence 6643 99999988776666555543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=189.42 Aligned_cols=142 Identities=20% Similarity=0.295 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcc
Q 008902 104 FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 183 (549)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (549)
..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++..+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~------------------------- 123 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF------------------------- 123 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence 78899999999999999999999999997 9999999999999988888765421
Q ss_pred hhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHhhhhchhH
Q 008902 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWGS 260 (549)
Q Consensus 184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~---~~l~~~~gw~~ 260 (549)
..+...++++|++.|+|.+...+...++++|.+|+++ |+..+++++.+.++|..+++.++ ..+.+..+||+
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~ 197 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence 0345678899999999999999999999999999888 99999999999999999999998 66667789999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008902 261 AFGALAIAMGISNMLFF 277 (549)
Q Consensus 261 ~f~i~~~~~~~~~i~~~ 277 (549)
.|++.++..++.++..+
T Consensus 198 ~f~~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 198 PLGLQLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99986665555544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=188.28 Aligned_cols=322 Identities=16% Similarity=0.164 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchh
Q 008902 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (549)
Q Consensus 106 ~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (549)
+.+++.+++.++..++.++.|+++|++ |||++++++.+++.+|.++++.+ .
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a----------------------------~ 140 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA----------------------------P 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence 347999999999999999999999987 99999999999999999999987 5
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-hchhHHHHH
Q 008902 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA 264 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~-~gw~~~f~i 264 (549)
+..+++++|++.|+|.|+.....+.+++|..|++. |+...+.++...++|..++..+.....+. .+||..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 78999999999999999999999999999999988 99999999999999999885444443332 489998888
Q ss_pred HHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhhhcccCccccccccccCCCcccccCCccccc-CCcc--
Q 008902 265 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH-TDDF-- 341 (549)
Q Consensus 265 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~-~~~~-- 341 (549)
..+..++..+..++ +||+|+| +..+++.+++++.+.++.. +++.
T Consensus 215 ~~i~~~~~~~~~~~--------------------------------~pesp~~-L~~~g~~~~a~~~l~~l~g~~~~~~~ 261 (513)
T KOG0254|consen 215 ALIPAVILALGMLF--------------------------------LPESPRW-LIEKGRLEEAKRSLKRLRGLSPEDVE 261 (513)
T ss_pred HHHHHHHHHHHHHh--------------------------------CCCChHH-HHHcCChHHHHHHHHHHhCCCCcchH
Confidence 87777666666433 5889999 8888888888877766654 2111
Q ss_pred hHhhhhhhhcccc--c-CCCCCCccccchhHHHHHHhhhhchhhhHHHHHHHHHhhhhhHHHHHHHhcccCCCCcccCCC
Q 008902 342 RCLDKAALELKED--V-INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT 418 (549)
Q Consensus 342 ~~l~~a~~~~~~~--~-~~~~~~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~~~g~~~~~~ 418 (549)
..++..+.....+ . +.+..|+.+.. ....|+....+.+..+++.........++..+.+....+. +..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~-------~~~ 332 (513)
T KOG0254|consen 262 VELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKS-------DTF 332 (513)
T ss_pred HHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCC-------chH
Confidence 1221111110000 0 00111211211 1223444433444333333222222222222333222221 222
Q ss_pred ccCchhHHHHHHHHHhhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHH-------------------------
Q 008902 419 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA------------------------- 473 (549)
Q Consensus 419 ~~~~i~~i~~ii~~p~~~~~~~~l~rr~~~~~~~~~~l~~i~~G~~l~~~~~~~~------------------------- 473 (549)
....+..+..++...+...++|+++||. .+..|.+.+++++++.
T Consensus 333 ~~~~~~~~v~~~~t~~~~~lvd~~gRr~-----------lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
T KOG0254|consen 333 LASIILGVVNFLGTLVATYLVDRFGRRK-----------LLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL 401 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence 2233333334444444456677777763 1222222222222211
Q ss_pred -----------HHHH--HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008902 474 -----------GLLE--FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 515 (549)
Q Consensus 474 -----------~~~~--~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~v~~ 515 (549)
+... ...+.+|.+.|+.+.++....+++.+++.....+....
T Consensus 402 ~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~ 456 (513)
T KOG0254|consen 402 CLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE 456 (513)
T ss_pred HHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 22456899999999999999999999988777666544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-17 Score=173.13 Aligned_cols=176 Identities=18% Similarity=0.176 Sum_probs=146.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
+++.++.+.+..+...++.......+| ++.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 444555555555666666554555444 56788999999999999999999999999999999997 9999999999988
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++... .+...++++|++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 126 (385)
T TIGR00710 81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------ 126 (385)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence 8888877664 456788889999999999999999999999999877
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
|++.+++.+....+|..+++.+++++.+..+|++.|++.++..++..+....
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999899999998877766655554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-17 Score=173.59 Aligned_cols=174 Identities=13% Similarity=0.123 Sum_probs=148.3
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHH
Q 008902 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 64 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~ 143 (549)
.|..|+.+..+.+..++.....|.....++. +.+++|++..+.+...+.+..+..++.++.|+++||+ |||+++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~ 92 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFA 92 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHH
Confidence 4556766666666666666666666666555 5678999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 008902 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 144 ~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
++..++.+++.+. .+.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 93 ~~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--- 141 (394)
T PRK10213 93 VLLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT--- 141 (394)
T ss_pred HHHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH---
Confidence 9999888777664 467899999999999999999999999999999887
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q 008902 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~ 273 (549)
|+.+.++...+.++|..++|.+++++.+..|||+.|++.++..++..
T Consensus 142 ---~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 ---VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765554443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=175.36 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
...+.+.+++..+....+...++. +.+++|.+..+.+...+.+.++..++.++.|+++||+ |||+++.++.++..++.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~ 92 (406)
T PRK15402 15 PLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTC 92 (406)
T ss_pred HHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHH
Confidence 333444444444444444444443 5678999999999999999999999999999999997 99999999998888887
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+++..+ .+...+++.|++.|++.+...+...+.+.|.+|+++ |.+.
T Consensus 93 ~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~ 138 (406)
T PRK15402 93 LAILLA----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKI 138 (406)
T ss_pred HHHHHH----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHH
Confidence 776654 356778889999999998888888899999999877 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
.++.+....+|..++|.+++++.+..+|++.|++.+++.++..+..+
T Consensus 139 ~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 139 TALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLW 185 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999998888999999887777666555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-17 Score=173.25 Aligned_cols=162 Identities=12% Similarity=0.090 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~ 153 (549)
.+++.+..+..++.+...+| .+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~ 91 (393)
T PRK09705 14 LVLIGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMR 91 (393)
T ss_pred HHHHHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555 56789999999999999999999999999999999997 99999999999999999998
Q ss_pred HhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 008902 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
+++ +++..++++|++.|+|.+...+....++.+.+| ++ |+..++.
T Consensus 92 ~~a----------------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~ 136 (393)
T PRK09705 92 ELY----------------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGL 136 (393)
T ss_pred HHC----------------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHH
Confidence 876 467788899999999999999999999999987 56 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHH
Q 008902 234 FYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGIS 272 (549)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~-gw~~~f~i~~~~~~~~ 272 (549)
+..+.++|..+++.+++++.++. +||+.+.+.++..++.
T Consensus 137 ~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 137 WSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988775 7998876655444333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-17 Score=170.42 Aligned_cols=174 Identities=7% Similarity=0.055 Sum_probs=144.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
+|++..+...+..++.....+.+...++. +.+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 45667777777777777766555555554 5678999999999999999999999999999999997 999999999988
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+++.+. ++...++++|++.|++.+...+...+.+.|.+|+++
T Consensus 82 ~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~----- 128 (394)
T PRK03699 82 MILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ----- 128 (394)
T ss_pred HHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch-----
Confidence 88888877764 467788899999999999888888999999998877
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHHHHHHH
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~-~~gw~~~f~i~~~~~~~~~i~ 275 (549)
|+...+..+...++|+.++|.+.+++.. ..+||+.|.+.++..++..++
T Consensus 129 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 129 -RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 8998888888888999999999888764 569999998877665554443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-17 Score=169.16 Aligned_cols=169 Identities=19% Similarity=0.248 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 008902 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~ 152 (549)
.+.+..++..+..+......+.|. +++|.+..+.+.+.+...++..++.++.|+++||+ |||+++.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 455667777888877777777766 56799999999999999999999999999999997 9999999999999998888
Q ss_pred HHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 008902 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+.+. .+...+++++++.|++.+...+...++..|.+|+++ |++.++
T Consensus 81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 126 (352)
T cd06174 81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG 126 (352)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence 7765 467888899999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
+.+...++|..++|.+.+.+.+..+|++.|++.++..++..+...
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (352)
T cd06174 127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999988777666655543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-17 Score=167.19 Aligned_cols=181 Identities=13% Similarity=0.131 Sum_probs=162.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
+..|..++.+.+..|+-...-+..... .+-+.+++|.|...++..++.|..+..++.|+-..+.||+ .||++++..+.
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gL-Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGL-LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhc-hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 345667888888888877777656554 4567789999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+++++.++.+++ +|+..++++|++.|+..|..++...+..+++.|+++
T Consensus 87 lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~---- 134 (394)
T COG2814 87 LFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK---- 134 (394)
T ss_pred HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc----
Confidence 999999999998 689999999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccc
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~ 281 (549)
|++++++...+..+...+|..++.++.+.+|||..|++.++..++.++..+...|
T Consensus 135 --~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 --RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred --hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999988888777777666544
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-17 Score=177.66 Aligned_cols=154 Identities=10% Similarity=0.056 Sum_probs=122.5
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcc
Q 008902 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 170 (549)
....|+.++ |++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++++....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 344577777 99999999999999999999999999999997 99999999999888888777664110
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 008902 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV 249 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-i~~~i~ 249 (549)
..+...+++.|++.|++.+...+.....+.|++|+++ |++++++++.+.++|+. ++|++.
T Consensus 117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 0256677888999999999888888888999999887 99999999999999875 455544
Q ss_pred HHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 250 VYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
..+....+||+.|++.++..++..++.
T Consensus 178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 178 LGMAWFNDWHAALYMPAFAAILVALFA 204 (452)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 334344589999998776655544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-18 Score=175.02 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=132.0
Q ss_pred HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccc
Q 008902 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (549)
Q Consensus 92 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 171 (549)
+..++.+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.++
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--------------- 80 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS--------------- 80 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---------------
Confidence 45578889999999999999999999999999999999997 99999999999998888887765
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH-HHHH
Q 008902 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVV 250 (549)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~-~i~~ 250 (549)
.+...++++|++.|++.+...+...+++.|.+|+++ |++.+++.+.+.++|..+++ ++.+
T Consensus 81 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 141 (379)
T TIGR00881 81 -------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF 141 (379)
T ss_pred -------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence 467888899999999999999999999999999887 99999999999999999999 5667
Q ss_pred HHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 251 YIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 251 ~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
.+.+..+|++.|++.++..++..+..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 142 GIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 7777789999998877665554444433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-17 Score=173.45 Aligned_cols=171 Identities=12% Similarity=-0.014 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH-----HHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~-----a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
....+.+..++..+++......++.|++ ++|.+..+ .+.+.+.+.+...++.++.|+++||+ |||+++.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 92 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence 4555667777888888777888888875 58887654 37788888999999999999999997 99999999988
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++... .+...+++.|++.|++.+ ..+.....+.|.+|+++
T Consensus 93 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---- 139 (408)
T PRK09874 93 GMGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK---- 139 (408)
T ss_pred HHHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh----
Confidence 888877766554 467788889999998755 45677788889998877
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
|++..++++...++|..++|.+.+++.+..+|++.|++.++..++..+..+
T Consensus 140 --~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (408)
T PRK09874 140 --SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTL 190 (408)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999889999999988776665555443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-17 Score=179.66 Aligned_cols=169 Identities=14% Similarity=0.228 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
+.+|+.+..+.+..++..+..+.+.. +..++.+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITL-VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 35566777777777777777755544 45567789999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.+. .+...++++|++.|++.++..+...+++.|.+|+++
T Consensus 94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 141 (496)
T PRK03893 94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---- 141 (496)
T ss_pred HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence 888888877765 467888999999999999999999999999999877
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
|+..+++++.+.++|..++|.+.+++.+..+|++.|++.++..
T Consensus 142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~ 184 (496)
T PRK03893 142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI 184 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-18 Score=181.89 Aligned_cols=153 Identities=16% Similarity=0.085 Sum_probs=126.5
Q ss_pred HHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcccc
Q 008902 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (549)
Q Consensus 93 ~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 172 (549)
...+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.++++.... .
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-----------~-- 117 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG-----------S-- 117 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh-----------c--
Confidence 4567889999999999999999999999999999999997 9999999888887777666654311 0
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008902 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l 252 (549)
...+...+++.|++.|++.+...+....+++|.+|+++ |++.++++..+.++|+.+++.+..++
T Consensus 118 ----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 118 ----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred ----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHH
Confidence 01467889999999999999999999999999999988 99999999999999999999988777
Q ss_pred hhhh---chhHHHHHHHHHHHHHHHH
Q 008902 253 QMEH---GWGSAFGALAIAMGISNML 275 (549)
Q Consensus 253 ~~~~---gw~~~f~i~~~~~~~~~i~ 275 (549)
.+.. +|+..|.+.++..++..++
T Consensus 182 ~~~~~~~~~~~~f~~~g~~~~~~~i~ 207 (467)
T PRK09556 182 ANYFFDGHVIGMFIFPSIIALIIGFI 207 (467)
T ss_pred HHhhccCcchhHHHHHHHHHHHHHHH
Confidence 6643 5888887766555444333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-17 Score=168.54 Aligned_cols=169 Identities=11% Similarity=0.041 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHH-HHHHHHHHHHHH
Q 008902 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGI 153 (549)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i-~~~~~~ig~~~~ 153 (549)
.+..++..++.......++.|+++++|.+..+.+.+.+.+.+...+..++.|+++||+ ||||.+.+ +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3456777788878888899999999999999999999999999999999999999997 99887654 444444555555
Q ss_pred HhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH--H
Q 008902 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF--F 231 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~--~ 231 (549)
+.+ ++...+++.+++.+.+.+...|...++..|..+++. |... .
T Consensus 82 ~~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~ 127 (375)
T TIGR00899 82 AWN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFS 127 (375)
T ss_pred Hhc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHH
Confidence 543 356677778888887777777777788888877654 5433 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
++.+...++|..++|.+++++.+..+||+.|++.+++.++..+..+.
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 67777889999999999999999899999999887766655554433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-17 Score=174.26 Aligned_cols=173 Identities=19% Similarity=0.157 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 008902 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~ 152 (549)
.++...++..++.......++.+. ++++.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIG 98 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHH
Confidence 344445666666655555556554 56777999999999999999999999999999997 9999999888877776665
Q ss_pred HHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 008902 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+...... .. .+...+++.+++.|++.+...++..+.+.|.+|+++ |++..+
T Consensus 99 ~~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 149 (417)
T PRK10489 99 LALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGA 149 (417)
T ss_pred HHHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHH
Confidence 5432110 00 356777788999999988888888899999999877 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
+.+...++|..++|.+++++.+..+|++.|++.++..++..+..
T Consensus 150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988899999988776665554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-17 Score=172.84 Aligned_cols=175 Identities=15% Similarity=0.105 Sum_probs=129.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHH-HHHHH-----HHHHHHHhHHHHHhhhhcchhHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA-VNNFL-----GISQASSVLGGFLADAYLGRYWT 138 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~-~~~~~-----~~~~~~~l~~G~laDr~~GR~~~ 138 (549)
..||+.....++..+++.+....+.. +...+.++++.+..+.+.. .+... +...++.++.|+++||+ |||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~ 88 (434)
T PRK15075 11 ESKARAILRVTSGNFLEMFDFFLFGF-YATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKG 88 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHH
Confidence 34566777788888888888865554 4557888898877664433 22222 12236788999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 008902 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 139 i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
+.++.+++.++.++++++.....+. ......++++|++.|++.+...++...+++|.+|+
T Consensus 89 l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 148 (434)
T PRK15075 89 LIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP 148 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence 9999999999988888762100000 00012568899999999999999999999999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------hhhhchhHHHHHHHH
Q 008902 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGSAFGALAI 267 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l--------~~~~gw~~~f~i~~~ 267 (549)
++ |++..+++....++|..+++.+++.+ .+..|||+.|++.++
T Consensus 149 ~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 149 GR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred cc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 88 99999998888888887777776655 246799999987543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-16 Score=166.27 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
+.++.+++..++..++...+.+.++.|+. ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 56888888999998888888888888875 6899999999999999999999999999999997 999999999999988
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+.+.++ ++...++++|++.|++.+...+...+...|..++++ |+
T Consensus 84 ~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 129 (381)
T PRK03633 84 GCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RG 129 (381)
T ss_pred HHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HH
Confidence 88777664 467888899999999999888888777888888766 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw 258 (549)
+.+++++.+.++|..++|.+.+++.+...+
T Consensus 130 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 130 RLLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999988765433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-16 Score=165.35 Aligned_cols=170 Identities=12% Similarity=0.060 Sum_probs=136.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
+-||.+....+..++..++.+....+++.|+ +++|.+..+.+.+.+.+.++..++.+++|+++||+ ||||++.++.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 4456777778888888888777777888888 56899999999999999999999999999999997 999999999998
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+++..... . ..+...+++.|++.|+|.+...+...+.+.+.+|+++
T Consensus 88 ~~~~~~~~~~~~~-----~-------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~----- 138 (402)
T TIGR00897 88 WCVGHAAFIVFGL-----G-------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN----- 138 (402)
T ss_pred HHHHHHHHHHHhc-----c-------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH-----
Confidence 8887665432111 0 0256677788999999888777777778889998877
Q ss_pred hhhhHHHHHHHHHHHHH-HHHHHHHHHHhhhhchhHHHHHHHH
Q 008902 226 HLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAI 267 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~-~i~~~i~~~l~~~~gw~~~f~i~~~ 267 (549)
|+++.++++.+.++|. .++|.+++++.+..||+..++....
T Consensus 139 -~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 139 -LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 9999999999999996 5889999998888887655554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-17 Score=175.42 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=127.5
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCC
Q 008902 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (549)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (549)
+++++..+.+.+.+.+..+..++.+++|+++||+ |||+++.++.++..++.++......
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999997 9999999999888887766544311
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-c
Q 008902 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G 257 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~-g 257 (549)
.+...+++.|++.|++.+...+....+++|.+|+++ |+++.++++.+.++|..+++.+++++.+.. |
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 245678899999999999999999999999999888 999999999999999999999999999884 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 008902 258 WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 258 w~~~f~i~~~~~~~~~i~~~~ 278 (549)
|++.|++.++..++..++++.
T Consensus 197 w~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred CCeehhhhhHHHHHHHHHHHH
Confidence 999999887766555544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-16 Score=166.39 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
+.++.+.+..++..+..+.....++ .+.+++|.+..+.+...+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 3566777777777777766666655 45778999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+++..+ .+.+.+++.|++.|++.+...+....++.|.+++++ |+
T Consensus 81 ~~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 126 (382)
T PRK10091 81 GNAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VT 126 (382)
T ss_pred HHHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hh
Confidence 88887765 467889999999999999888888888999998776 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
+.++++..+..+|..++|.+++++.+..+||+.|++.++..++..+..
T Consensus 127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 127 AAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 899998899999999999999999988999999998877655554433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-19 Score=181.94 Aligned_cols=178 Identities=19% Similarity=0.225 Sum_probs=159.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
..++.+..++++.+++++.-|.+..- ..-.++.+|.+....+++...+.+...++.|+.|+|+||| .|++++.+|.++
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv-~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i 107 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGV-LKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI 107 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence 34457888999999999999987764 5567889999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..+.++..+++ ..++++.+.|.+.|+|.+...+..+++++|.||++.
T Consensus 108 W~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~----- 154 (493)
T KOG1330|consen 108 WTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK----- 154 (493)
T ss_pred HHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh-----
Confidence 99999888876 578999999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHhc
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~ 279 (549)
|++.++++|+++++|.++|.+.++++.+..+ |||+|.+.++..++..++.++.
T Consensus 155 -Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 155 -RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred -hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence 9999999999999999999999999888776 9999998888777666665443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-16 Score=164.88 Aligned_cols=172 Identities=12% Similarity=0.061 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHhHHHHHhhhhcchhHHHH-HHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~~GR~~~i~-i~~~~~~i 148 (549)
.+..+...++..++...+...++.|+++++|.+.++.+.+.+.... +..++++++|+ +||+ ||||.++ .+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~~ 94 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGVL 94 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHHH
Confidence 4555666888888888888999999999999999999998776544 55566666676 9997 9988754 44444445
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh-
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL- 227 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r- 227 (549)
+..+.+++ .+...+++.+.+.+...+...+....+..|..+++. |
T Consensus 95 ~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 140 (393)
T PRK15011 95 ACTLFAWN----------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------RE 140 (393)
T ss_pred HHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------ch
Confidence 55544443 344555444433333334556777777777766544 4
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 228 -DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 -~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
+...++.+.+.++|..++|.+++++.++.|||..|++.++..++..+..+.
T Consensus 141 ~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 141 AVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 334467888999999999999999999999999998877665555444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-16 Score=170.98 Aligned_cols=175 Identities=15% Similarity=0.085 Sum_probs=132.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
+++.+.......++..+..+.+... ..++.+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPL-LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 4455555555555555555555443 4477889999999999988889999999999999999997 9999999998888
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.++++++ .+...++++|++.|++.+... ....+++|.+|+++
T Consensus 112 ~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------ 156 (476)
T PLN00028 112 APAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------ 156 (476)
T ss_pred HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------
Confidence 8887776654 356677888999999887654 34567899999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh----hh-----hchhHHHHHHHHHHHHHHHHHHh
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ----ME-----HGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~----~~-----~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
|++++++.+...++|+.+++.+.+.+. +. .|||+.|++.+++.++..+..++
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999988777778777766665442 22 48999999887766555444433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-16 Score=163.15 Aligned_cols=172 Identities=14% Similarity=0.111 Sum_probs=141.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
.+|..+.+.+..++..+........++ ++.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 456666666666666666654444444 55688999999999999999999999999999999997 9999999999888
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++... .+...+++.|++.|++.+...+....+..|.++.++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (394)
T PRK11652 84 ILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------ 129 (394)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------
Confidence 8887776654 356788899999999988877777888889888766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i 274 (549)
++...+++..+..++..++|.+++++.+..||++.|++.++..++..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999998888999999987665544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-16 Score=161.68 Aligned_cols=170 Identities=16% Similarity=0.109 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
+....+..+....+.......+| .+.+++|.+..+.+...+.+.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence 34455555566666655555544 55678999999999999999999999999999999997 99999999998888888
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+++... .+...++++|++.|++.+...+...+++.|.+|+++ |++.
T Consensus 83 ~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~ 128 (392)
T PRK10473 83 LLCSLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKV 128 (392)
T ss_pred HHHHHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHH
Confidence 777654 356677889999999999888889999999999887 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
+++++...++|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus 129 ~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 129 LSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888899999988776665555543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-15 Score=160.70 Aligned_cols=163 Identities=14% Similarity=0.078 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++.++...++..++...+...++. +.++++.+....+++.+.+.+...++.+++|+++||+ |||+++.++.++..++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence 3556667777777766555544454 4678999998999999999999999999999999997 9999999999999887
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++... .+. ++.|+++|++.+...|...+++.|.+|+++ |++
T Consensus 82 ~~~~~~~----------------------------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~ 124 (393)
T PRK11195 82 CLLMLFG----------------------------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVK 124 (393)
T ss_pred HHHHHHH----------------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 7765543 222 678899999999999999999999999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~ 272 (549)
+.++.....++|..+||.+++++.+.. |+..+++.+.+.+++
T Consensus 125 a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 125 ANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999998753 777766655544444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=168.35 Aligned_cols=178 Identities=13% Similarity=0.085 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
|+.++..++...........+... ..++++ +|++..+.+++.+.+.++..++.+++|+++||+ |||+.+.++.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~ 102 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALA-MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSA 102 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhh-hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHH
Confidence 444444444444443333333333 456665 599999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.+... . ..+...+++.|++.|++.+...+.....+.|.+|+++ |
T Consensus 103 ~~~~~~~~~~~---~---------------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------r 152 (438)
T TIGR00712 103 AVMLLMGFVPW---A---------------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------R 152 (438)
T ss_pred HHHHHHhcccc---c---------------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------c
Confidence 87776654311 0 0245667788999999999988888899999999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-hhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~-~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
++++++++...++|+.+++.+.+.+. ...+||+.|++.++..++..+..++
T Consensus 153 g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 153 GTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988877644 4568999999877776665444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-17 Score=165.25 Aligned_cols=172 Identities=13% Similarity=0.102 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~---~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
+.++...++...+||.+.- ...+++.++.++|.++.+.+.+.+.+.+.++-.+.|.++||. +.|+.+.+++++..+
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence 4455556666677776653 456788899999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
..+++.++ .+...+.+..++.|+.+|.-.|+....++.+|+.++ ||
T Consensus 107 ~nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG 152 (448)
T COG2271 107 VNILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG 152 (448)
T ss_pred HHHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence 99998886 467788888899999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 229 RFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~--~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
+..++++.+-|+|+++.|.+. +++..+.+||.+|++++++.++..++.+.
T Consensus 153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 89998889999999998876655554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-16 Score=165.42 Aligned_cols=178 Identities=8% Similarity=-0.143 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++...+..++..++++.+.++++.|+++++|++..+.+.+.+.+.++..+++++.|+++||+ |||+++.++..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 566666777888888878899999999999999999999999999999999999999999997 9999998876665554
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHH-HHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML-YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
...+...... .... ....+.++.++..+.......+...+..++.. ++++
T Consensus 90 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g 140 (420)
T PRK09528 90 FGPFFIYVFA-------------------------PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSG 140 (420)
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhcc
Confidence 4322221000 0000 01112222223222222222222223322111 1156
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
..++..+...++|..++|.+++++.+ .+|++.|++.++..++.+++.+.
T Consensus 141 ~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 141 FEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred ccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence 66777778889999999999998876 48999998877666665555444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-15 Score=161.41 Aligned_cols=147 Identities=15% Similarity=0.088 Sum_probs=129.0
Q ss_pred hhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccc
Q 008902 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (549)
Q Consensus 96 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (549)
+.++++.+....+..++.+.++..++.+++|+++||+ |||+++.++.+++.++.+++.++
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------------------- 101 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------------------- 101 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------------------
Confidence 5678999999999999999999999999999999997 99999999999998888877765
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008902 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (549)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~ 255 (549)
.+...++++|+++|++.+...+.....+.|.+++++ |.+.++++..+.++|..++|.+++++.+.
T Consensus 102 ---------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~ 166 (413)
T PRK15403 102 ---------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHF 166 (413)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999988766667788899999877 88999999999999999999999999888
Q ss_pred hchhHHHHHHHHHHHHHHHHHH
Q 008902 256 HGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 256 ~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
.|||+.|++.++..+++++..+
T Consensus 167 ~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 167 VHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988777666655433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-16 Score=163.17 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
.+..++..++.....+...+.++.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 45556666666677777777777789999999999999999999999999999999999997 99999999999999988
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchh-hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
+++.+. . +...++++|++.|++.+. .+...++++|.+|+++ |+.
T Consensus 82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~ 126 (366)
T TIGR00886 82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT 126 (366)
T ss_pred HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence 887765 4 677888999999998654 4566788999999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----------hhchhHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA 264 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~----------~~gw~~~f~i 264 (549)
..+++....++|..+++.+.+.+.. ..+||+.|++
T Consensus 127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 9999887778888877777766554 2379999843
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-16 Score=160.04 Aligned_cols=155 Identities=17% Similarity=0.228 Sum_probs=134.0
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q 008902 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (549)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~ 166 (549)
.....++.+. +++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++...
T Consensus 9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~---------- 76 (377)
T PRK11102 9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA---------- 76 (377)
T ss_pred HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445566565 57999999999999999999999999999999997 99999999999988888877765
Q ss_pred CCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 008902 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 246 (549)
.+...+++.+++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|
T Consensus 77 ------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~ 132 (377)
T PRK11102 77 ------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAP 132 (377)
T ss_pred ------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999998999999999999887 99999999999999999999
Q ss_pred HHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 247 ~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
.+++++.+..+|++.|++.++...+..+...
T Consensus 133 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 133 IIGGWLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 9999999988999999887766655554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-15 Score=157.67 Aligned_cols=160 Identities=7% Similarity=-0.092 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH-HHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT-IYLAGL 150 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~-~~~ig~ 150 (549)
+.+.+..++..+++-...++++.|+ +++|++..+.+.+.+.+.+...+++++.|.++||+ ||++....... ...+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence 3344555665666655667788888 46899999999999999999999999999999997 98543321111 111111
Q ss_pred HHHH-hhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 151 TGIT-LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 151 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
+.+. .+ ++.+.+++.+.+.+.+.+...+...++..+. .++ |+.
T Consensus 85 ~~~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~ 128 (382)
T TIGR00902 85 AAFSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGL 128 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCC
Confidence 1111 11 4677888889888988888888877776543 233 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
.++......++|..++|.+++++.+..||+..|++..+..
T Consensus 129 ~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 129 DYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL 168 (382)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 8899999999999999999999999999999988765543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-16 Score=161.65 Aligned_cols=161 Identities=16% Similarity=0.236 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHH--hhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008902 82 RMAYFGLSVNMVTF--MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (549)
Q Consensus 82 ~~~~~~v~~~l~~y--l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~ 159 (549)
.+++.....++|.+ +.+++|.+..+.+...+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.+.
T Consensus 16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~--- 91 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV--- 91 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh---
Confidence 33444444444544 6789999999999999999999999999999999997 99999999998888877776654
Q ss_pred ccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 008902 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (549)
.+...++++|++.|++.+...+...+++.|.+++++ +.+.++..+...+
T Consensus 92 -------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 140 (401)
T PRK11043 92 -------------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVA 140 (401)
T ss_pred -------------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH
Confidence 456788889999999988877777888999999876 7788888888888
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 240 lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
+|..++|.+++++.+..||++.|++.++..++..+..+
T Consensus 141 ~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 141 LSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887766655554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-16 Score=164.67 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=124.2
Q ss_pred HHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcccc
Q 008902 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (549)
Q Consensus 93 ~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 172 (549)
...+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.++++++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~---------------- 104 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS---------------- 104 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh----------------
Confidence 3456789999999999999999999999999999999997 99999999998888888777664
Q ss_pred ccccCCCCCcchhhHHHHHH-HHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008902 173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (549)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~ 251 (549)
.+...+++ .|++.|++.+...+...+.+.+.++ ++ |++..++.+.+.++|..++|.+.++
T Consensus 105 ------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~ 165 (455)
T TIGR00892 105 ------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY 165 (455)
T ss_pred ------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34455544 4678899888765666677888885 45 8999999999999999999999999
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 252 IQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 252 l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
+.+..|||+.|++.+++.+++.+..++.
T Consensus 166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 166 LFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887766555544443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-15 Score=160.86 Aligned_cols=154 Identities=13% Similarity=-0.032 Sum_probs=123.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
....+..+...-+...+........+| .+++++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 344556666666666666655555545 55899999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++..... ..++..++++|+++|+|.|...+..+++++|..++++
T Consensus 102 ~~~~~l~~~~~~-------------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------ 150 (438)
T PRK10133 102 ALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------ 150 (438)
T ss_pred HHHHHHHHHHHh-------------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------
Confidence 999877642211 0467889999999999999999999999998766554
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~ 253 (549)
|...+++++....+|..+++.+++.+.
T Consensus 151 ~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 151 GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555678888888889988888876543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=172.46 Aligned_cols=167 Identities=17% Similarity=0.132 Sum_probs=142.7
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccC
Q 008902 98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG 177 (549)
Q Consensus 98 ~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (549)
+..+.+.....+..+++.++..+|+++.|.+||| +|||++++++.++.+++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a--------------------- 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA--------------------- 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 4566677888899999999999999999999999 599999999999999999888876
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008902 178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g 257 (549)
.++..+++.|++.|++.++...+...+++|.++++. |+...++ ......++.+++.+++++.. +
T Consensus 169 -------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~ 232 (521)
T KOG0255|consen 169 -------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--D 232 (521)
T ss_pred -------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence 688999999999999999999999999999999998 9999998 77888888889999988877 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhhhcccCccccccccccCCCcccccCCccc
Q 008902 258 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKI 335 (549)
Q Consensus 258 w~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~ 335 (549)
||+.+++..+..++.++..++ .||+||| +..+++.+++.+.+++.
T Consensus 233 Wr~~~~~~~~~~~~~~~~~~l--------------------------------~~Es~rw-l~~~g~~~~a~~~l~~~ 277 (521)
T KOG0255|consen 233 WRWLFWIISIPSGLFLLLWFL--------------------------------PPESPRW-LLSKGRIDEAIKILKKI 277 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--------------------------------cCcChHH-HHHcCchHHHHHHHHHH
Confidence 999999888777766655322 3578888 77777776666555443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=158.78 Aligned_cols=178 Identities=10% Similarity=-0.104 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.+|......++...+...+.++++.|+++++|++..+.+.+.+.+.+...++.+++|+++||+ |||+.+.++.+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 467777788888888888889999999999999999999999999999999999999999997 9999998877666554
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
...+......+.. .......+++++++.+++.+...+....+..|.-+ + ++.
T Consensus 82 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~ 133 (396)
T TIGR00882 82 FAPFFIYVFGPLL--------------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF 133 (396)
T ss_pred HHHHHHHHhhhHH--------------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence 4332211100000 00122344566777888888877777777666422 1 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
.++......++|..++|.+++.+.+ .+|++.|++.++..++..++.+
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 5566777789999999999988765 5999999988776665554443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-16 Score=166.30 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=135.0
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCC
Q 008902 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (549)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (549)
+++++..+.+.+.+.+..++.++.+.+|+++||+ |-|+++.++.++..+++++..+++.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 5788999999999999999999999999999997 9999999999999999999888754
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-hc
Q 008902 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG 257 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~-~g 257 (549)
.+...+++.|+++|++.|...|++..+.+.+.|+.+ |+++.++.+.+..+|.+++-.++|++.+. .|
T Consensus 126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G 193 (466)
T KOG2532|consen 126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG 193 (466)
T ss_pred ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence 344577899999999999999999999999999988 99999999999999999999999999988 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q 008902 258 WGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 258 w~~~f~i~~~~~~~~~i~~~~~ 279 (549)
|+..|++.++..++..++++..
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887777776553
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=158.39 Aligned_cols=165 Identities=17% Similarity=0.191 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHhhHhcC--CChhHHHHHHH--H---HHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Q 008902 82 RMAYFGLSVNMVTFMFYVMH--KSFADSSNAVN--N---FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 82 ~~~~~~v~~~l~~yl~~~l~--~s~~~a~~~~~--~---~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~ 154 (549)
.+..+.+. ....++.++.. .+..+.+...+ . ..+...++.++.|+++||+ |||+++.++.++..++.+++.
T Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 6 WFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred HHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHh
Confidence 34443333 34455555543 33333333222 2 2233346889999999997 999999999999999888877
Q ss_pred hhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 008902 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (549)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (549)
++...+.. .......++++|++.|++.+...+...++++|.+++++ |+...++.
T Consensus 84 ~~~~~~~~--------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 137 (394)
T TIGR00883 84 LLPSYATI--------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQ 137 (394)
T ss_pred hCCChhhh--------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHH
Confidence 65210000 00112357888999999999999999999999999888 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHh--------hhhchhHHHHHHHHHHHHHHH
Q 008902 235 YLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 235 ~~~~~lg~~i~~~i~~~l~--------~~~gw~~~f~i~~~~~~~~~i 274 (549)
+.+..+|..+++.+...+. +..+||+.|.+.++..+++.+
T Consensus 138 ~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 138 QVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 9999999999988776653 356899999877665554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-15 Score=155.16 Aligned_cols=186 Identities=8% Similarity=-0.058 Sum_probs=133.0
Q ss_pred ccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchh
Q 008902 61 DLSKTGGW---IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY 136 (549)
Q Consensus 61 ~~~~~~~~---~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~ 136 (549)
.|..+++. |.++...+. +...+..+.+.+.+..++.+ ++|++..+.+++.+++.+.+.++.++.|++.||+ |.|
T Consensus 23 ~w~~~~~~~a~r~l~~s~~~-f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R 100 (462)
T PRK15034 23 FWENKGKHIARRNLWISVSC-LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGR 100 (462)
T ss_pred HHhhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCh
Confidence 44444443 455544433 44445555555555666655 7999999999999999999999999999999997 999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccC
Q 008902 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (549)
Q Consensus 137 ~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (549)
+++.++.++..+.++++.++... . ..++..+++.|++.|++ +...+.....++++|
T Consensus 101 ~v~~~~~ll~~i~~~~~~~a~~~----~-------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf 156 (462)
T PRK15034 101 RWTVFSTAILIIPCVWLGIAVQN----P-------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFF 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc----c-------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC
Confidence 99999999988888877764210 0 03678899999999998 667788889999999
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-----h-------------hhchhHHHHHHHHHHHHHHHHHHh
Q 008902 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-----M-------------EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~-----~-------------~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
|+++ |+++++++....|+|..+++.+...+. . ..+|+..+++..+..++..++.++
T Consensus 157 p~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 157 PKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred CHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 999999986666677665555443322 2 234666666655555555444444
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-15 Score=177.67 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh--HHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA--DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~--~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
+.+...++..++..+...+....+..++...++.+.. ..+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 3455566666666666656666666677666766543 357888889999999999999999997 9999999988877
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
+++.++..++... .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 88 ~~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------ 136 (1146)
T PRK08633 88 VGLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------ 136 (1146)
T ss_pred HHHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------
Confidence 7666555543210 357888999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~ 255 (549)
|+.+++++..+.++|.++++.+++++.+.
T Consensus 137 r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 137 LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998765
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-15 Score=153.08 Aligned_cols=143 Identities=16% Similarity=0.145 Sum_probs=119.2
Q ss_pred HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccc
Q 008902 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (549)
Q Consensus 92 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~ 171 (549)
+...+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.. ..
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~--------------- 84 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA--------------- 84 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh---------------
Confidence 44467789999999999999999999999999999999997 99999999988877776655 32
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008902 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (549)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~ 251 (549)
.+...+++.|++.|+|.+...+..+....|.++ ++ |++.+++++.+.++|..+++.+.+.
T Consensus 85 -------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~ 144 (355)
T TIGR00896 85 -------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVP 144 (355)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999888888888888886 45 8999999999999999999999988
Q ss_pred Hhhhh--chhHHHHHHHHHHHH
Q 008902 252 IQMEH--GWGSAFGALAIAMGI 271 (549)
Q Consensus 252 l~~~~--gw~~~f~i~~~~~~~ 271 (549)
+.+.. +||+.|.+.++..++
T Consensus 145 l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 145 LAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHhhhhhHHHHHHHHHHHHHH
Confidence 87765 399888766554333
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-17 Score=162.94 Aligned_cols=223 Identities=19% Similarity=0.146 Sum_probs=168.4
Q ss_pred ccccccchhhhhcchhhhhcCCCccC-CCCcccccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc
Q 008902 22 HQRKKLSVYFIESDNRRMALGRGYTG-GTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100 (549)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l 100 (549)
.+++|++.+.|+.++.++|+.+.+.+ ++........-. .....+++ -+|.+.+..++..+..|++..|.|.|+.+..
T Consensus 206 ~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~-~~YVL~Nk-~iW~la~a~vfvYivR~gi~dW~p~YL~e~k 283 (448)
T COG2271 206 LRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIF-VKYVLKNK-LIWLLALANVFVYVVRYGINDWGPLYLSEVK 283 (448)
T ss_pred hCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHH-HHHHHcCh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 35778888888877766542333211 111100000011 22233343 6899999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhc-chhHHH-HHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCC
Q 008902 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (549)
Q Consensus 101 ~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-GR~~~i-~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (549)
|++..+++..++.|..+...++++.||+|||++ |||... ++++++.+++.+...++ |.
T Consensus 284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-------~~------------- 343 (448)
T COG2271 284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-------PN------------- 343 (448)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-------CC-------------
Confidence 999999999999999999999999999999998 766544 45565555565555554 11
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhhhhc
Q 008902 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~i~~~i~~~l~~~~g 257 (549)
.+..+..+.++++|+...++...+.....|..|.+. -|++.++..++..+ |+..+....+++.|.+|
T Consensus 344 ------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g 411 (448)
T COG2271 344 ------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVGLFAYLIGAALAGLPLGYIADTWG 411 (448)
T ss_pred ------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence 356777788889999999998888888899999887 78888887777777 88999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 008902 258 WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 258 w~~~f~i~~~~~~~~~i~~~~ 278 (549)
|...|.+..++.+++.++++.
T Consensus 412 W~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 412 WDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 999999877777776666544
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-14 Score=153.08 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh----cchhHH-HHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IAIFTT 144 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~----~GR~~~-i~i~~~ 144 (549)
..+.++...+...+..+.....++.|+. +.|.+..+.+... .... .+++.++.|+++||+ +||||. +.++.+
T Consensus 13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~-~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 13 NSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQ-AYVFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHH-HHHHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 3556666667777777777777888865 4588888887652 2222 246889999999994 288885 556766
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
...++...+++.. |. .+...+.+.+++.+++.+...+...++..|.+|+++
T Consensus 90 ~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~---- 140 (491)
T PRK11010 90 LLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE---- 140 (491)
T ss_pred HHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh----
Confidence 6666666665531 11 356778888889999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHHHHHHHHHHH
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~-~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
|+++.++...+..+|..+++.+.+++.+ ..|||..|++.++..++..+..
T Consensus 141 --rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~ 191 (491)
T PRK11010 141 --RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT 191 (491)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 4699999998877666554443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-14 Score=149.14 Aligned_cols=156 Identities=8% Similarity=-0.024 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchh----HHHHHHHHHHHHHHHHH
Q 008902 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 78 ~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~----~~i~i~~~~~~ig~~~~ 153 (549)
.++..+++..+.+.++.|++ ++|.|..+.+.+.+.+.+...++.+++|.++||+ ||+ +.+.+...+. ...+
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHH
Confidence 44444556666778888984 5899999999999999999999999999999997 984 3322222111 1111
Q ss_pred HhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 008902 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
... .++.+.+++.|++.+++.+...+...++..+.. ++ |+..++.
T Consensus 88 ~~~---------------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~ 132 (382)
T PRK11128 88 WFG---------------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGK 132 (382)
T ss_pred HHh---------------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcch
Confidence 111 035777788899999998888888887777652 23 6667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q 008902 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~ 273 (549)
.+...++|..++|.+++++.++.|||..|++.++..++..
T Consensus 133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 7777889999999999999999999999987775544443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-20 Score=199.73 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchh
Q 008902 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (549)
Q Consensus 106 ~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (549)
..++..+...++..+|.+++|+++||+ |||+++.++.++.+++.++..++.. ..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~-------------------------~~ 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS-------------------------YN 100 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc-------------------------cc
Confidence 456788899999999999999999997 9999999999999999988887621 02
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---hhchhHHH
Q 008902 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF 262 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~---~~gw~~~f 262 (549)
+...+.++|++.|++.|+..+..+.++.|..|++. |+...++.+.+..+|..++..+...+.+ ..+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999999999999999999999999988 9999999888888888888776544433 24599988
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccC
Q 008902 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 338 (549)
Q Consensus 263 ~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~ 338 (549)
.+.++..++.++.... .||||+| ++.++|.+||++.++++++.
T Consensus 175 ~~~~~~~l~~~~~~~~--------------------------------~pESP~w-L~~~~~~~~A~~~l~~~~~~ 217 (451)
T PF00083_consen 175 IFGAIPSLLVLLLRFF--------------------------------LPESPRW-LLSKGRDEEAEKVLRKLRGK 217 (451)
T ss_pred cccccccccccccccc--------------------------------cccccce-eccccccccccccccccccc
Confidence 8877666544433322 6999999 99999999999998886543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-13 Score=146.51 Aligned_cols=173 Identities=11% Similarity=0.023 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++.+...-+...+.. ++...+...+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+++.++
T Consensus 4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 3444555555555555 4554556677899999999999999999999999999999999997 9999999999999998
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..+.. ..++..+++++++.|+|.|...+..++++.+..|+++ |++
T Consensus 82 ~~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~ 130 (410)
T TIGR00885 82 AFLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATR 130 (410)
T ss_pred HHHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHH
Confidence 877654321 0367888999999999999999999999999988877 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--------------------------hhchhHHHHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~--------------------------~~gw~~~f~i~~~~~~~~~i~ 275 (549)
..++.+...++|..++|.+.+.+.. ..+||+.|.+.++..++..++
T Consensus 131 ~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 131 RLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998887642 246999998776655544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-14 Score=169.57 Aligned_cols=145 Identities=14% Similarity=0.053 Sum_probs=110.3
Q ss_pred hhHhcCCChh-HHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH--HHHHHHhhhhhccccCCCCCcccc
Q 008902 96 MFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA--GLTGITLCATMKVFMPNQDNCDRI 172 (549)
Q Consensus 96 l~~~l~~s~~-~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i--g~~~~~~~~~~~~~~~~~~~~~~~ 172 (549)
++...+.+.. ..+++.+++.+...++.+++|+++||+ |||+++.+...+.++ ...++.+..
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~--------------- 105 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL--------------- 105 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 3334444333 356777788899999999999999997 999986442222221 211211110
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008902 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l 252 (549)
.+++.++++|+++|++.+...|...+++.|++++++ |+.++++.+.+.++|.++||.+++++
T Consensus 106 ------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l 167 (1140)
T PRK06814 106 ------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLA 167 (1140)
T ss_pred ------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999988 99999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHH
Q 008902 253 QMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 253 ~~~~gw~~~f~i~~~~~~~~~i 274 (549)
.+..+|++.|++.+++.+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 168 TISGNFVILVALLMGIAVLGWL 189 (1140)
T ss_pred HhccccHHHHHHHHHHHHHHHH
Confidence 9999999888544444444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-14 Score=152.30 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh---cchhH-HHHHHHHHHHHHHHHHH
Q 008902 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 79 ~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GR~~-~i~i~~~~~~ig~~~~~ 154 (549)
+...+....+..+++.|+++++|++...++.+.++..+...+..|+.|+++||. +|||| .++++.+...++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 444556666777899999999999999999999999999999999999999984 58855 56677777777766665
Q ss_pred hhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhhhHHHH
Q 008902 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNF 233 (549)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~~~~~ 233 (549)
.... .. .......+++.+++.+++.+.......++.+|..++ ++ |++..++
T Consensus 89 ~~~~---~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~ 140 (437)
T TIGR00792 89 TTPD---FS-------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTF 140 (437)
T ss_pred hCCC---CC-------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHH
Confidence 4311 00 002345566667778888888777888888898754 34 8888888
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------hhhchhHHHHHHHHHHHHHHHHHH
Q 008902 234 FYLSVTVGAIVAFTLVVYIQ-------MEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~-------~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
.....++|+.+++.+.+.+. +..+|++.+.+.++...+..++.+
T Consensus 141 ~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~ 191 (437)
T TIGR00792 141 RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICF 191 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877766655443 245799988877766655554443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-15 Score=158.50 Aligned_cols=206 Identities=11% Similarity=-0.003 Sum_probs=148.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
++|+.........++..+.+|++..++|.|+++.+|++..++........++..++.+++|+++||+ |||+++.++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~ 325 (490)
T PRK10642 247 KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVA 325 (490)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 3555555555555667788999999999999999999988887777778888999999999999997 999998887765
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+.+..... . .+...+++++++.+++.+...+....+..|.+|++.
T Consensus 326 ~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~----- 375 (490)
T PRK10642 326 LFVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI----- 375 (490)
T ss_pred HHHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-----
Confidence 4443333222111 0 234566777888888777777777888899999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHH
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAF 304 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~ 304 (549)
|++++++.+....+++.++|.+.+++.+..+ |+..+++..+..+++++..++
T Consensus 376 -Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------------- 428 (490)
T PRK10642 376 -RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT-------------------------- 428 (490)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 9999998555566677889999999887654 676666555555544444433
Q ss_pred HhhhcccCcccccccccc-----CCCcccccCCcccc
Q 008902 305 RKRHAAFSSSELIGLYEV-----PGKHSAIKGSGKIA 336 (549)
Q Consensus 305 ~~~~~~~p~s~~~~l~~~-----~~~~~a~~~~~~~~ 336 (549)
.||+|+| +.++ ++.+||++.+++++
T Consensus 429 ------~pes~~~-~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 429 ------MKETANR-PLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred ------hccccCC-CCCCccccccchhhHHHHhhccc
Confidence 3555555 5543 67777887777775
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-13 Score=145.47 Aligned_cols=178 Identities=13% Similarity=0.068 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.+..++..+++.+++.+.....++-++ .++.-|+...+++.....+-..+..+++|.++||+ .|||+++.+.++..+.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence 455566666777777754444444444 35566788888888888899999999999999997 9999999999888776
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+++.... . ..+.+.+++..++.|++.+...|+..+++.|+.|+++ ...
T Consensus 89 ~~~L~~l~~~----~-------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~ 139 (524)
T PF05977_consen 89 ALLLAVLAFF----G-------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPA 139 (524)
T ss_pred HHHHHHHHHh----C-------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHH
Confidence 6665554221 0 0356777888889999999999999999999999988 889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
+.++.....|+.-.+||.++|.+....|-.+.|++.+++.++.++.+..
T Consensus 140 A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~ 188 (524)
T PF05977_consen 140 ANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR 188 (524)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998889888999888777666554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-13 Score=142.46 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=116.2
Q ss_pred HHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh----cchhHHH-HHHHHHHHHHHHHHHhhhhhccc
Q 008902 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 88 v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~----~GR~~~i-~i~~~~~~ig~~~~~~~~~~~~~ 162 (549)
+.......+.+++|+|.++.+..... ..... ..+++|+++||+ +||||.+ .++.++..+....+++...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 33444445566889999999887544 33333 388999999997 4899975 5566666555555544310
Q ss_pred cCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 008902 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (549)
..+...+....++.+++.+...+...++++|.+|+++ |+.+.++...+.++|.
T Consensus 80 ---------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~ 132 (356)
T TIGR00901 80 ---------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM 132 (356)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence 0344455555566778888888999999999999887 9999999999999999
Q ss_pred HHHHHHHHHHhhhhc--------hhHHHHHHHHHHHHHHHHHH
Q 008902 243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 243 ~i~~~i~~~l~~~~g--------w~~~f~i~~~~~~~~~i~~~ 277 (549)
.+++.+++++....+ ||..|++.+++.++..+..+
T Consensus 133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888 99999988877666555443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-12 Score=138.67 Aligned_cols=166 Identities=14% Similarity=0.000 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 008902 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~ 152 (549)
.+.+..++...++-...+.++.|+++++|++..+.+++.+.+.++..++++++|.++||+.|||+++.++.++..++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 34555566666665566899999999999999999999999999999999999999999733477877777766666555
Q ss_pred HHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC--chhhhhhhhH
Q 008902 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS--KDYKTHLDRF 230 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~--~~~~~~r~~~ 230 (549)
..+. .+...+++.+++.+++.+...+...+...+...++. ..+...|.+.
T Consensus 86 ~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~ 137 (418)
T TIGR00889 86 AAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRV 137 (418)
T ss_pred HHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeee
Confidence 5443 345666777777888776666555444322211000 0000014444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~ 273 (549)
++ .+|.+++|.+++.+.....|. +|++.++..++..
T Consensus 138 ~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~ 173 (418)
T TIGR00889 138 MG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG 173 (418)
T ss_pred eh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence 43 378888888888774433354 4555554444443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-12 Score=137.73 Aligned_cols=166 Identities=14% Similarity=0.108 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh----cchhH-HHHHHHHHHHHH
Q 008902 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAG 149 (549)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~----~GR~~-~i~i~~~~~~ig 149 (549)
+...+.+.+.+.-....+|.|+++ .|++.++.+.+...... .+..+++|+++||+ +|||| .+.++.++..++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 444555666666667788999875 59999999988555544 68899999999996 27766 677777777777
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
...+++... ..+...+++..++.+++.+...+...++.+|.+|+++ |++
T Consensus 82 ~~~l~~~~~-------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~ 130 (402)
T PRK11902 82 IAAMAFCPP-------------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGA 130 (402)
T ss_pred HHHHHhcCc-------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhH
Confidence 666655310 0345556666666778888888999999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hchhHHHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~-~gw~~~f~i~~~~~~~~~i 274 (549)
+.++...+.++|..+++.+.+++.+. .|||..|++.++..++..+
T Consensus 131 ~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 131 GAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 99999899999999999999888875 4999999987776555444
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-14 Score=158.04 Aligned_cols=207 Identities=15% Similarity=0.117 Sum_probs=154.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
..+++.+++.+....+......++.......+.++++++..+.+++.+.+.++..++.++.|+++||+ ||+|.+.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l 106 (633)
T TIGR00805 28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA 106 (633)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence 34566565555545555555556777777788899999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHhhhhhc-ccc-------------CCCCCccccc-------cccCCCCCcc--hhhHHHHHHHHHHHHHhh
Q 008902 145 IYLAGLTGITLCATMK-VFM-------------PNQDNCDRIS-------QLLGSCEPAK--SWQMLYLYTVLYITGFGA 201 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~-~~~-------------~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~l~g~g~ 201 (549)
++.+|.+++++...+. ... ...+.|.... +....|.+.+ +..+..++++|++.|+|.
T Consensus 107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~ 186 (633)
T TIGR00805 107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA 186 (633)
T ss_pred HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence 9999999988753210 000 0011221000 0111333322 124567889999999999
Q ss_pred cccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------chh
Q 008902 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GWG 259 (549)
Q Consensus 202 g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~----------------------gw~ 259 (549)
+...+...+++.|.+|+++ |+..+++++.+..+|.++|+++++++.+.+ +|+
T Consensus 187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 9999999999999999988 999999999999999999999999887532 378
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008902 260 SAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 260 ~~f~i~~~~~~~~~i~~~~ 278 (549)
.+|++.+++.++..+.++.
T Consensus 261 l~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888877766665554444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-14 Score=140.07 Aligned_cols=199 Identities=13% Similarity=0.018 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHh
Q 008902 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (549)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~ 155 (549)
+....+-...-...+.+..-+....|.+..+..++......+..+++..+|.++|++ |||+...+..+...+.-++-..
T Consensus 84 g~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~ 162 (528)
T KOG0253|consen 84 GMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGA 162 (528)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcC
Confidence 333333333433444445555667888888999999999999999999999999997 9999888776655544333332
Q ss_pred hhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHH
Q 008902 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (549)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~ 235 (549)
+ .|+..+++.|.+.++|.|+ .|...++-.|..|..+ |....-..
T Consensus 163 s----------------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~- 206 (528)
T KOG0253|consen 163 S----------------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS- 206 (528)
T ss_pred C----------------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-
Confidence 2 5788899999999999999 8888999999999877 76665555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhhhcccC
Q 008902 236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFS 312 (549)
Q Consensus 236 ~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p 312 (549)
....+|..+...++-.+..+.||||..........+..+..+.....-+..-.+|++.+.+ ..+-++.|..+.++|
T Consensus 207 ~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAl-etL~kiArmNg~qlp 282 (528)
T KOG0253|consen 207 FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKAL-ETLHKIARMNGKQLP 282 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHH-HHHHHHHHhcCCCCC
Confidence 6667888888877777778889999877766554444443333222112222344554433 333333443344454
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-13 Score=135.75 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=148.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
+.++|.++.. ...+...+.-+.+.+.+..++++++|+|+.|.++++.+-.+...+..++-|++.||+ |-|++..++.+
T Consensus 10 ~~~~~~L~~S-~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLS-TLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML 87 (417)
T ss_pred cchhHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence 3445555544 444555566667778888999999999999999999999999999999999999997 98898889998
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..+-.+.++++... .+.+.+++..+++|++.+ ..+...+..+..||+++
T Consensus 88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~---- 137 (417)
T COG2223 88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK---- 137 (417)
T ss_pred HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcccc-eehcccccccccCChhh----
Confidence 888888888776331 344678888888888854 45777788999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc---hhHHHHHHHHHHHHHHHHHHhccc
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g---w~~~f~i~~~~~~~~~i~~~~~~~ 281 (549)
.|.+.+++- ..|+|..+...++..+....+ |+..-.+..+.+++..+.+++..+
T Consensus 138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999998 999999999999999988888 998888888888887777766543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-12 Score=138.72 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=121.1
Q ss_pred HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCc
Q 008902 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 169 (549)
.....++..++|-+ ....++...+.++..+..++.|.|||.+ |||+.++++.++.++|.++.+.+
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 45567888999875 4556778889999999999999999975 99999999999999999998865
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008902 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~ 249 (549)
++...++++..+.|+|.|... .....++|..|.+. |..+..+..+...+...+++.++
T Consensus 129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia 186 (599)
T PF06609_consen 129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA 186 (599)
T ss_pred ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence 578899999999999977654 45666899999877 87777666665555566777777
Q ss_pred HHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 250 VYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 250 ~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
..+..+.+|||.|++.++...++++..
T Consensus 187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 187 QLFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 666666789999999888776666554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=141.15 Aligned_cols=175 Identities=9% Similarity=-0.017 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcc-----hhHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTT 144 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G-----R~~~i~i~~~ 144 (549)
....+....+.+.+. +.+...++.++++++|++.++.+...+...+...+-++ +|+++||+ + ||+.+.++.+
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence 344555577888888 77778889999999999999998888888888777666 99999997 6 6777777765
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+.. ...+..+... + .......+.+++.+++.+....+..++..|..+ ++++
T Consensus 104 l~~-~~~~~~l~~~-----~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~-- 154 (468)
T TIGR00788 104 LGS-AILYGLLPGK-----V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS-- 154 (468)
T ss_pred HHH-HHHHHhcccc-----c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC--
Confidence 542 1122222100 0 123333346778899999999999999999998 4322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
.++...++.|.+.++|..+++.++|++.+..+|+..|++.++..++..+...
T Consensus 155 -~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~ 206 (468)
T TIGR00788 155 -AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSN 206 (468)
T ss_pred -cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 1455666777888899999999999999999999999988777666644333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=8e-12 Score=133.10 Aligned_cols=196 Identities=12% Similarity=0.067 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhh----hcchhHHHHHH-HH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA----YLGRYWTIAIF-TT 144 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr----~~GR~~~i~i~-~~ 144 (549)
.++.+....+...+++-...++++.|+ +.+|.+....+.+..+..+...+..++.|++||| + ||||.++++ .+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence 455666666777777766667777665 6899999999999999999999999999999995 6 999998875 55
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
...++.+++..+.....+... + ..+.........++++..+..++.....+...++++|++|+++.+
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~-- 149 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR-- 149 (477)
T ss_pred HHHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH--
Confidence 555555555544211100000 0 000000011234445555666788888888899999999987621
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH--hhh-------------hchhHHHHHHHHHHHHHHHHHHhcccc
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYI--QME-------------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l--~~~-------------~gw~~~f~i~~~~~~~~~i~~~~~~~~ 282 (549)
++.+.++.....++|+.+++.++++. .+. .+.+..|++.++..++..++..+..++
T Consensus 150 --~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E 220 (477)
T TIGR01301 150 --TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE 220 (477)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence 35788899999999999999988765 221 157889999888887777776664444
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=130.85 Aligned_cols=119 Identities=15% Similarity=0.060 Sum_probs=104.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCC
Q 008902 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (549)
Q Consensus 100 l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (549)
.+-+..-+|.+-+.|.+..++.++..|.+|||+ |||.+++++.+...+...+.+.+
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S----------------------- 118 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS----------------------- 118 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 333445678899999999999999999999998 99999999999999988887776
Q ss_pred CCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008902 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (549)
.|+..++++|++.|+..|- ...+-++++|.+++++ |+.+++....+..+|..+||.+++++.+
T Consensus 119 -----~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 -----RNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -----HHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5677788889999999876 4677899999999988 9999999999999999999999999987
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-12 Score=133.93 Aligned_cols=173 Identities=10% Similarity=0.041 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh---cchhH-HHHHHHHHHHHHH
Q 008902 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGL 150 (549)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GR~~-~i~i~~~~~~ig~ 150 (549)
.+..+...+.+..+..+++.|+++.+|++...++.+..+..+...+..|+.|+++||. +|||| .++++.+...+..
T Consensus 15 g~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~ 94 (444)
T PRK09669 15 GLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVC 94 (444)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHH
Confidence 3444566666677788899999999999999999999999999999999999999993 48755 4556666666655
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+++... |... .......+++...+.+++.........++.+|+.++.+ + |.+.
T Consensus 95 ~l~f~~---p~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~--e---R~~l 147 (444)
T PRK09669 95 LLTFYT---PDFG-------------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR--E---RHSL 147 (444)
T ss_pred HHHHhC---CCCC-------------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH--H---HHHH
Confidence 444332 1110 01344555555566676676777778899999885432 1 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-------hhchhHHHHHHHHHHHHHHH
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~-------~~gw~~~f~i~~~~~~~~~i 274 (549)
.++.....++|..+++.+...+.. ..+|+..+.+.++...+..+
T Consensus 148 ~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 148 QSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 888888888887777665433322 24677666665555444433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=140.33 Aligned_cols=143 Identities=16% Similarity=0.167 Sum_probs=106.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCC
Q 008902 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (549)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (549)
+++...+.+..+..++..+|+++.||++|++ |||+++...+++.++++++++++- |.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~---------------------~~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSV---------------------GTT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCC---------------------CCC
Confidence 4566778888999999999999999999986 999999999999999998666541 112
Q ss_pred cchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHhh---
Q 008902 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF----YLSVTVGAIVAFTLVVYIQM--- 254 (549)
Q Consensus 182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~----~~~~~lg~~i~~~i~~~l~~--- 254 (549)
+...-+.++...|+++|+|.|+-+|+..+..+|..-.+. |+...+.. .++.-.|+.++-++.+-...
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 222356778889999999999999999999999988877 88777653 33444455555444443321
Q ss_pred --------hhchhHHHHHHHHHHHHH
Q 008902 255 --------EHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 255 --------~~gw~~~f~i~~~~~~~~ 272 (549)
..=||..|.+.++..++.
T Consensus 213 ~~~~~~~ld~vWRl~~glg~vpa~~~ 238 (538)
T KOG0252|consen 213 GPSTYPHLDGVWRIIFGLGAVPALLV 238 (538)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 123998888776654443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.4e-11 Score=123.04 Aligned_cols=176 Identities=11% Similarity=-0.006 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHH--HHHHHHHHHHHHhHH-HHHhhhhcchhHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~--~~~~~~~~~~~~l~~-G~laDr~~GR~~~i~i~~~~~~ 147 (549)
...++...+.+.+.+..+.+.+|.|++ +.|.+..+.+.. .+.......+.+++. ++++||+ ||||.+++...+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 455666778888887777788888875 569999999876 344555555555555 6689986 99998766553322
Q ss_pred H-HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 148 i-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
. ....+.... + . ......+.....+.++..+...+....+..|..++++
T Consensus 81 ~~~~~~~~~~~--~----~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------ 130 (390)
T TIGR02718 81 SACLASLALVG--P----D------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------ 130 (390)
T ss_pred HHHHHHHHcCC--c----c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence 2 122222110 0 0 0112233334444556666666677777777776655
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
++.+.+....+..+|..+++...+++.+..||+..|++.++..++..+..+.
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 6767777777888999999999999999999999999888776665555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=139.93 Aligned_cols=175 Identities=16% Similarity=0.076 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++.+.+..++....++++..++|.|+++.+|++..+++.......++..++.+++|+++||+ |||+.+.+...+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 577788888888888888999999999999999999999998889999999999999999997 9988776654444433
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++.+... .+....++.+++.|++..+..........|.+|++. |++
T Consensus 338 ~~~~~~~~~--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~ 385 (467)
T PRK09556 338 FTLGVYQHA--------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGV 385 (467)
T ss_pred HHHHHHHhc--------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHH
Confidence 322222100 233445566666675544444444466679999888 999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhh------------hhchhHHHHHHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 230 ~~~~~~~~~~l-g~~i~~~i~~~l~~------------~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
+.++.+...++ |+.++|.+.|++.+ ..+|+..|++..++.+++.+..+
T Consensus 386 a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 386 ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 99999998886 77999999999999 57899999888777777665554
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-11 Score=131.78 Aligned_cols=171 Identities=11% Similarity=-0.015 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh---cch-hHHHHHHHHHHHHHH
Q 008902 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGR-YWTIAIFTTIYLAGL 150 (549)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GR-~~~i~i~~~~~~ig~ 150 (549)
.+..+...+.+..+..+++.|+++.+|++....+.+..+..+...+..|+.|+++||. ||| |+.++++.+...++.
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 3455566777777888999999999999999999999999999999999999999931 498 555666777666665
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhhh
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR 229 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~ 229 (549)
+++... |.. +.......+++...+..++.........++.+|+.++ ++ |.+
T Consensus 92 ~llf~~---p~~-------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~ 143 (473)
T PRK10429 92 FLLFSA---HLF-------------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQ 143 (473)
T ss_pred HHHHcC---CCC-------------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHH
Confidence 555432 100 0012344445555566788888888888999999854 44 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------hhchhHHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~-------~~gw~~~f~i~~~~~~~~~ 273 (549)
..++-....++|+.+.+.+...+.+ ..+|++...+.++...+..
T Consensus 144 l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~ 194 (473)
T PRK10429 144 LVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST 194 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 8888667777776666554433222 1245555555444444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-11 Score=131.92 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=120.4
Q ss_pred hHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcccccccc
Q 008902 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (549)
Q Consensus 97 ~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (549)
.+++++...+-+.+.++|.+++.++.+++|.|.||+ .-.+.+..+.++..+..++....
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------------------- 131 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------------------- 131 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 456778888889999999999999999999999997 85555555554444433333222
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---
Q 008902 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--- 253 (549)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~--- 253 (549)
.+.+.+++.|++.|+..++.+|+...+++..|.+++ |+.-+++++.+..+|.++|.+++..+.
T Consensus 132 --------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~ 197 (495)
T KOG2533|consen 132 --------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLN 197 (495)
T ss_pred --------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence 578899999999999999999999999999999988 999999999999999999999998764
Q ss_pred ---hhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 254 ---MEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 254 ---~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
...||||.|.+.++..++..++.++
T Consensus 198 ~~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 198 GSGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred CCCCcCCceeehhHHHHHHHHHHheEEE
Confidence 2468999999988777666655544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.9e-12 Score=131.44 Aligned_cols=169 Identities=11% Similarity=0.079 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~ 153 (549)
.+...+.....++....+++.|+++++|++..+++.+.+...+...++.+++|+++||+ |||+.+.++.+...+....+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~ 299 (393)
T PRK15011 221 LFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGM 299 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHH
Confidence 33333444444555667889999999999999988888777777888899999999997 99998877665554443332
Q ss_pred HhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 008902 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
... .+...+++.+++.+++.|...+.......|.+|+ + |+++.++
T Consensus 300 ~~~----------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~ 344 (393)
T PRK15011 300 LMA----------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTL 344 (393)
T ss_pred HHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHH
Confidence 221 2344555666666666666666667777888874 4 7888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
++...++|..++|.++|++.+..||+..|++.+++.++++++.+.
T Consensus 345 ~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 345 YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999899999998887777777666554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-12 Score=130.25 Aligned_cols=166 Identities=11% Similarity=0.011 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH-HHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~-a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~ 152 (549)
+++-.|+..+=. ..+.+..|+.+++|++.++ .+.+.+.+..++.++.+++|+++||+ |-|+++.++.+...+..++
T Consensus 32 lC~fGF~~e~R~--n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L 108 (511)
T TIGR00806 32 LCFYGFMAQFRP--GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLL 108 (511)
T ss_pred HHHHHHHHHhhc--hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHH
Confidence 444444433322 3455677999999999999 99999999999999999999999997 9999999999999998888
Q ss_pred HHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 008902 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
+.++ .+...+.+.|++.|++.|... +...++...+|+++ |+++.+
T Consensus 109 ~~fa----------------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~rats 153 (511)
T TIGR00806 109 LLLG----------------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAA 153 (511)
T ss_pred HHHH----------------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHH
Confidence 8876 467889999999999999998 99999999999888 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhHHHH---HHHHHHHHHHHHHHh
Q 008902 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG---ALAIAMGISNMLFFI 278 (549)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~---i~~~~~~~~~i~~~~ 278 (549)
++..+.++|.++++.++++ ...+||++-+. +......+++++.++
T Consensus 154 i~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 154 YSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 45678886554 444445555555444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-11 Score=119.07 Aligned_cols=136 Identities=17% Similarity=0.114 Sum_probs=120.2
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q 008902 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (549)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~ 166 (549)
.....+.+.+++.++++..+++++...+..++.+.++..|++.+|+ |+|+.+++++.++.+|..++.-++.
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~-------- 100 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS-------- 100 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh--------
Confidence 4555678899999999999999999999999999999999999997 9999999999999999988864432
Q ss_pred CCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 008902 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 246 (549)
...+..+++++++++.|.+......++++..+.+++. -..-+++.+....+|+.++|
T Consensus 101 -----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp 157 (422)
T COG0738 101 -----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGP 157 (422)
T ss_pred -----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHH
Confidence 1578899999999999999999999999999999865 45556778888889999999
Q ss_pred HHHHHHhh
Q 008902 247 TLVVYIQM 254 (549)
Q Consensus 247 ~i~~~l~~ 254 (549)
++++++..
T Consensus 158 ~~g~~lil 165 (422)
T COG0738 158 LLGSSLIL 165 (422)
T ss_pred HHHHHHHH
Confidence 99988765
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.7e-11 Score=126.14 Aligned_cols=156 Identities=11% Similarity=0.047 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh---cchhHHH-HHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTI 145 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GR~~~i-~i~~~~ 145 (549)
..+.-.+..+..++.+..+..+++.|+++.+|++..+++.+.....+...+..++.|+++||. +||||.. .++.+.
T Consensus 9 ~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~ 88 (448)
T PRK09848 9 TIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP 88 (448)
T ss_pred HHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence 344444556666777777778888999999999999999999999999999999999999995 4777755 555554
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..+..+++..... ... .......+++...+.+++.+...++..++..++..+.+.
T Consensus 89 ~~~~~~~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~---- 143 (448)
T PRK09848 89 LMIFSVLVFWVPT--DWS-------------------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS---- 143 (448)
T ss_pred HHHHHHHHHhCcC--CCC-------------------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH----
Confidence 5444433321100 000 002233344455667788888888888887777765331
Q ss_pred hhhhHHHHHHHH-----HHHHHHHHHHHHHH
Q 008902 226 HLDRFFNFFYLS-----VTVGAIVAFTLVVY 251 (549)
Q Consensus 226 ~r~~~~~~~~~~-----~~lg~~i~~~i~~~ 251 (549)
|....++-.++ .+++..++|.+.+.
T Consensus 144 -r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 144 -RARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665554433 34555666666554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=130.23 Aligned_cols=184 Identities=12% Similarity=-0.024 Sum_probs=133.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
+++++.........++..+.+|.+.++++.|+++.+|++......+.........++.+++|+++||+ |||+++.++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~ 324 (438)
T PRK09952 246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGAL 324 (438)
T ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence 34454455555566777888899999999999999999887665555556667788889999999997 99999888776
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+.+..... .. .....+++..++.+++.+...+...++.+|.+|.+.
T Consensus 325 ~~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~---- 376 (438)
T PRK09952 325 IGTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY---- 376 (438)
T ss_pred HHHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch----
Confidence 65554433332210 00 123333445556677777777888899999999987
Q ss_pred hhhhhHHHHH-HHHHHHHHHHHHHHHHHHhhhh--chhHHHHHHHHHHHHHHHHHHhc
Q 008902 225 THLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 225 ~~r~~~~~~~-~~~~~lg~~i~~~i~~~l~~~~--gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
|+++.++. ..+..+|++++|.+.+++.+.. +|...+.+.+++.+++.+..+..
T Consensus 377 --r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 377 --RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred --hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 99998884 4456689999999999998744 48888887777777776665543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-11 Score=129.15 Aligned_cols=176 Identities=14% Similarity=0.070 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhh----hhcchhHHH-HHHHHHHHHHHHHH
Q 008902 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTI-AIFTTIYLAGLTGI 153 (549)
Q Consensus 79 ~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laD----r~~GR~~~i-~i~~~~~~ig~~~~ 153 (549)
+...+.+.....+++.|+++.+|+++...+.+.....+...+..|+.|.++| |+ ||||-. +++.++..++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence 5556666667778899999999999999999999999999999999999999 65 876654 46777777777666
Q ss_pred Hhh-hhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 008902 154 TLC-ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 154 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
... .. ... .......+.+..++..++......+..++++|+.++.+. |.+..+
T Consensus 90 f~~~p~--~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~ 143 (428)
T PF13347_consen 90 FSPPPA--GLS-------------------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSS 143 (428)
T ss_pred hccccc--hhh-------------------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHH
Confidence 543 10 000 001334445666667888899999999999999986432 888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----h---hchhHHHHHHHHHHHHHHHHHHhccc
Q 008902 233 FFYLSVTVGAIVAFTLVVYIQM----E---HGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~----~---~gw~~~f~i~~~~~~~~~i~~~~~~~ 281 (549)
+-.....+|..+...+.+.+.+ . .+|++...+.++..++..++.....|
T Consensus 144 ~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~k 199 (428)
T PF13347_consen 144 WRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVK 199 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheee
Confidence 8777777777655555544432 1 16888877777666666665555433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=133.02 Aligned_cols=176 Identities=17% Similarity=0.139 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhc-chhHHH-HHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIYL 147 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-GR~~~i-~i~~~~~~ 147 (549)
.++...+..++.....+++..++|.|+++++|++..+++.....+.++..++.+++|+++||+. |||+.. .+...+..
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 5677777777777788888999999999999999888888888888888899999999999962 344332 22222223
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.+. +. .+....+++.++.|.+..+.......+..|.+|++. |
T Consensus 334 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~ 381 (452)
T PRK11273 334 IATIVYWLN-------PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------A 381 (452)
T ss_pred HHHHHHHHh-------cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------h
Confidence 333222221 00 123333344445555443333334456779999888 9
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 228 DRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i-~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
++.+++++...++|+.+ +|.+.+++.+..||+..|++.++..+++++...
T Consensus 382 g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 382 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999999888888665 799999999999999999887776666655544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=130.77 Aligned_cols=174 Identities=14% Similarity=0.052 Sum_probs=131.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
++++.++......++....++.+..+++.|+++++|.+..+.+.......++..++.+++|+++||+ |||+.+.++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~ 294 (394)
T TIGR00883 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVL 294 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence 3334566677777788888888889999999999999999999888888999999999999999997 999987765554
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..+.......... .. .+...+++..++.+++.+...+...+++.|.+|++.
T Consensus 295 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~----- 345 (394)
T TIGR00883 295 AALLAVPLLMALL-----DS-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV----- 345 (394)
T ss_pred HHHHHHHHHHHHh-----cC-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc-----
Confidence 4433221111100 00 234555566677888888888899999999999988
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHH
Q 008902 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMG 270 (549)
Q Consensus 226 ~r~~~~~~-~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~ 270 (549)
|++++++ +..+..+|..++|.+.+++.++.| |++.++..+++.+
T Consensus 346 -~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 346 -RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred -eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 8888887 455667899999999999999888 8877666554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-11 Score=136.07 Aligned_cols=132 Identities=9% Similarity=0.009 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHH
Q 008902 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (549)
Q Consensus 111 ~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (549)
..+..++..++.+++|+++||+ |||+++.++.++..++.+++++. .+...+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~~l 651 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------------NSESAM 651 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHHHH
Confidence 3445578889999999999997 99999999988888877766654 233445
Q ss_pred HHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q 008902 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (549)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~ 270 (549)
++.+++.+++.++..+...++.+|++|++. |++++++.+....+|++++|.+++++.+. +...+|++.+++.+
T Consensus 652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll 724 (742)
T TIGR01299 652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence 566667777777788889999999999988 99999999999999999999999988764 45567777776666
Q ss_pred HHHHHHHh
Q 008902 271 ISNMLFFI 278 (549)
Q Consensus 271 ~~~i~~~~ 278 (549)
++.++.+.
T Consensus 725 l~~ll~~~ 732 (742)
T TIGR01299 725 CGGLLALK 732 (742)
T ss_pred HHHHHHHh
Confidence 65555443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=126.91 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=134.8
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCC
Q 008902 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (549)
Q Consensus 99 ~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (549)
.++-++++.+.+..++.....+..++.|.+.||+ |+|-.+++|.++....++++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 3555778889999999999999999999999997 99999999999999999999986
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 008902 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw 258 (549)
.++++++++|.++|+|.++...+..++++|.||++.. |++.++..-.+..+|-.+||.++|.+.+..|+
T Consensus 157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 5678999999999999999999999999999998752 89999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccc
Q 008902 259 GSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 259 ~~~f~i~~~~~~~~~i~~~~~~~~ 282 (549)
+.+|.+.++.+++...+.++..+.
T Consensus 226 ~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 226 SAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHheeCc
Confidence 999999988887777766554433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-11 Score=126.65 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~---~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
-|.+.+..|+..+..+++.. .+-..+.++++.+..+.+++.++......+..|+.+.+.||+ |.|.+.+++.++..
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence 45566666666666666553 345567888999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHH-HHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
+|.++..++ .+.+.+++.. ++.|+|.|.........++..|++ .
T Consensus 123 ~g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------ 167 (509)
T KOG2504|consen 123 LGLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------ 167 (509)
T ss_pred HHHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------
Confidence 999998887 4566666655 678999999988888888877763 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcccc
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~ 282 (549)
|+.+.++...+..+|..+=|.+..++.+.+|||+.+++.+.+.+-.++.....++.
T Consensus 168 R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~ 223 (509)
T KOG2504|consen 168 RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPL 223 (509)
T ss_pred HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 78888887788888888888899999999999999998887776666655555553
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-11 Score=126.10 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008902 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (549)
Q Consensus 80 ~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~ 159 (549)
+..++++.+..+++.|+.+ .|++ ..+.....+.++..++.++.|+++||+ |||+.+.++.++..++.+++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~--- 299 (399)
T PRK05122 227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA--- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh---
Confidence 3455666677778888764 4553 345556677788888999999999997 99999988888777776665543
Q ss_pred ccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 008902 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (549)
.+...++++.++.|++.+...+.......|.+|++. |++.+++++...+
T Consensus 300 -------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (399)
T PRK05122 300 -------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLD 348 (399)
T ss_pred -------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHH
Confidence 244556677788999988888887788888888777 9999999999999
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccccc
Q 008902 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 240 lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~ 283 (549)
+|..+++.+.+++.+..||++.|++.+++.+++++.....+++.
T Consensus 349 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 349 LSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999988887777776665544433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-11 Score=122.47 Aligned_cols=174 Identities=20% Similarity=0.226 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhH-HHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~-~i~i~~~~~~ 147 (549)
+.++...+..++..........+.+.|+.+.+|.+..+.+........+..++.++.|+++||+ |||+ .+.++.++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 3445555666677777778888889999888899999999999999999999999999999997 9999 9999988888
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+.+... .+...+++..++.+++.+...+....+..|..|+++ |
T Consensus 254 i~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 299 (352)
T cd06174 254 LGLLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------R 299 (352)
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------H
Confidence 887777654 345667788889999999999999999999999877 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
++.+++++...++|..+++.+.+++.+..+|+..|.+.++..+++.+..+
T Consensus 300 ~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 300 GTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999989999999988888777766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=125.68 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~ 151 (549)
+.+....++..+.......+.+.|. +++|.+..+.+.+.+.+.++..++.+++|+++||+ |||+.+.++.++..++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~ 285 (377)
T TIGR00890 208 WVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMA 285 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHH
Confidence 3344444444455545555666665 56888888888888899999999999999999997 999999988888887776
Q ss_pred HHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 008902 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++..... .+...+++..++.+++.+...+..+.+.+|.+|+++ |++.+
T Consensus 286 ~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~ 333 (377)
T TIGR00890 286 AMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANY 333 (377)
T ss_pred HHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHh
Confidence 6554310 122334455667788888877888889999999888 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q 008902 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~ 273 (549)
++++...++|..++|.+.+++.++.||++.|.+.+++.++++
T Consensus 334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988777666554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-09 Score=116.24 Aligned_cols=173 Identities=10% Similarity=0.034 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh---cchhHHHH-HHHHHHHHHH
Q 008902 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTTIYLAGL 150 (549)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GR~~~i~-i~~~~~~ig~ 150 (549)
.+..+...+.+..+..++..|.++.+|+++..++.+..+.-+.-.+.-|+.|+++||. +||||-.+ ++.+.+.++.
T Consensus 15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~ 94 (460)
T PRK11462 15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC 94 (460)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence 3455556677777778899999999999999999999999999999999999999973 68876554 5666676666
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+++... |.... ......+++...+..++.........++.+|+.++.+ | |.+.
T Consensus 95 ~llf~~---p~~s~-------------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l 147 (460)
T PRK11462 95 VLAYST---PDLSM-------------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISL 147 (460)
T ss_pred HHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHH
Confidence 555432 11100 1224445555566778888888888899999987633 1 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-------hchhHHHHHHHHHHHHHHH
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~-------~gw~~~f~i~~~~~~~~~i 274 (549)
.++...+.++|..+++.+...+... .+|+....+.++...+..+
T Consensus 148 ~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~ 198 (460)
T PRK11462 148 QSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA 198 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 9998888888888777765444332 2466555544444434333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-10 Score=119.62 Aligned_cols=178 Identities=11% Similarity=-0.021 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
+..+...+..+..-+++-...++.+.+++++.|++.++.|.+.++..+...+.+++.|.++||+ |.||-+++...+..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 3566667777777777767778999999999999999999999999999999999999999997 966655444333322
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
....+......|.++ .| ++++.++.++..+.......+.. |.+-++.+ |.
T Consensus 86 l~~pff~~v~~pll~---------------------~n---~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~s-----r~ 135 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQ---------------------SN---FWLGAIIGGIYLGLVFNAGVPLS-EAYAERVS-----RR 135 (412)
T ss_dssp TCHHHHHHTHHHHHH---------------------TT----HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHH---------------------HH---HHHHHHHHHHHHHHHHcccchHH-HHHHHHHH-----HH
Confidence 211211111112111 11 22233232333333222222222 33332222 22
Q ss_pred hH--HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 229 RF--FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~--~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
.. ++-......+|.+++..++|++.+ .+-...||+..++.++..++.+.
T Consensus 136 ~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 136 NGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp HSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHH
Confidence 22 223455667888889999998875 45567888766655555444444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.7e-11 Score=128.73 Aligned_cols=176 Identities=10% Similarity=-0.010 Sum_probs=128.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
.++|..+........+.... |++... ...+++++|++..+.+.+.+.... ..++.+++|+++||+ |||+++.++.+
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~-y~fsv~-s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~l 99 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFM-YAFNLI-SGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMT 99 (591)
T ss_pred cchHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 56676666555555555443 355544 457889999999998887766433 345666789999997 99999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
++.+|+++++++... .+ . .+.+.+++.|++.|+|.+...+.....+.+.|| ++
T Consensus 100 l~~iG~ll~ala~~~-~i-~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~---- 152 (591)
T PTZ00207 100 VFCLGTLLFALTFQE-VI-E--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN---- 152 (591)
T ss_pred HHHHHHHHHHHHhcc-cc-c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh----
Confidence 999999998875220 00 0 367888999999999999888888888899997 45
Q ss_pred hhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q 008902 225 THLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i-~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~ 275 (549)
|+...++...+..+|+++ +++..+++.+ +|+..|++.++..++..++
T Consensus 153 --RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 153 --RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975 5555555543 4666666655544443333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-11 Score=128.78 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcc--hhHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYL 147 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G--R~~~i~i~~~~~~ 147 (549)
.++.+.+..++..+.++++.+++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ |+.......+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 45556666666667777888899999998999999999999999999999999999999999732 2332222222112
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+....+.+... .+.....+..+..|++..+.........+|.+|++. |
T Consensus 324 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 371 (434)
T PRK11663 324 LSVGSLWLMPF--------------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A 371 (434)
T ss_pred HHHHHHHHccc--------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence 22211111100 122222233334444433333334556789888777 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
++..++.+...++|..++|.+.+++.+..||+..|++.+++.+++.+..+.
T Consensus 372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888777666655443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-11 Score=126.46 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++.+.+..++..+..+++..++|.|+++.+|++..+++.+.+.+.++..++.+++|+++||+ |||+++.....+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 455566666677777788899999999999999999999999999999999999999999997 9999888776665554
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++... .+.....+..++.|++.+...+...++..|..+.+ ++.
T Consensus 285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~ 329 (394)
T PRK03699 285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK 329 (394)
T ss_pred HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence 4443322 23334445566778877777777777788877643 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~ 275 (549)
..++.+.+.++|..++|.+.|++.+..|++..|++.+++.+++.+.
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 5677777888999999999999999999999988777666655443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.7e-11 Score=122.86 Aligned_cols=160 Identities=10% Similarity=0.059 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008902 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 83 ~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~ 162 (549)
........+++.|+++++|.+..+.+.......+...++.+++|+++||+ |||+++.++.++..++...+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~------ 285 (375)
T TIGR00899 213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD------ 285 (375)
T ss_pred HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH------
Confidence 33444556788899999999999888877777777778889999999997 99999888766555444333322
Q ss_pred cCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 008902 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (549)
.+...+++..++.|++.+...+....+..|..|+ + +++.+++++...++|.
T Consensus 286 ----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~ 336 (375)
T TIGR00899 286 ----------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGW 336 (375)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHH
Confidence 3445556667777888887777777888888875 3 5688999999999999
Q ss_pred HHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 243 ~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
.++|.+.+++.+..||+..|++.+++.+++.++...
T Consensus 337 ~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 337 IIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999888877777665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-09 Score=106.79 Aligned_cols=173 Identities=18% Similarity=0.152 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
|..+..+.++.+--|-..-++-. +..-+.+++|+|.+.++.+.+.-.+...+..++..+|+.|+ |-.+.+..++++..
T Consensus 11 ~~li~gIvlia~NLR~~itsvgP-LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGP-LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhh-hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHH
Confidence 34555566666666666654444 56678899999999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+|.++=... +...++.+-.+.|.|.+......+.++-+-||++.
T Consensus 89 ~G~~iR~~~-----------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~------- 132 (395)
T COG2807 89 AGILIRSLG-----------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV------- 132 (395)
T ss_pred HHHHHHhcc-----------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------
Confidence 887664432 45677888889999999999999999999999754
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHHHh
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~-gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
+..++.|..+.++|+++++.+..-+.++. ||+....+-++..++++++++-
T Consensus 133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 77888999999999999999998888776 7999998888888888777654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-11 Score=123.22 Aligned_cols=179 Identities=12% Similarity=-0.002 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHH-HHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYLA 148 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~-i~i~~~~~~i 148 (549)
.++...+..++.....+.+..+++.|+.+.+|.+..+.+.+.....++..++.+++|+++||+ |||+. +........+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHH
Confidence 566677777888888888899999999999999999999999999999999999999999997 88861 1111111111
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+...+....... ..+... .+...+.+.+..+..+...++.+|.+|+++ |+
T Consensus 295 ~~~~~~~~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g 346 (399)
T TIGR00893 295 AGLVLSLLMFATNY---------------------VNIPYA-ALALVALGFFGLGAGAIGWALISDNAPGNI------AG 346 (399)
T ss_pred HHHHHHHHHHHhcc---------------------chhHHH-HHHHHHHHHhchhhhhHHHHHHHhhcChhH------HH
Confidence 11111111000000 012222 223333333333367888999999999888 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHH
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~ 277 (549)
+.+++++...++|..++|.+.+++.+..| |+..|.+.++..+++.+..+
T Consensus 347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888 99999887777666655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-10 Score=123.18 Aligned_cols=164 Identities=12% Similarity=0.037 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCChh---HHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q 008902 80 AERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 80 ~~~~~~~~v~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~ 156 (549)
+.......+...++.|+.+..+.... ..+.+.....++..++.++.|+++||+ |||+++.++.++..++.+++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T PRK09874 230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV 308 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh
Confidence 33444445666778888765543322 234455556677788889999999997 99999998887776666554433
Q ss_pred hhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 008902 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (549)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (549)
.+...+++.+++.|++.+...+...+...+..+++. |++.+++++.
T Consensus 309 ----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 354 (408)
T PRK09874 309 ----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS 354 (408)
T ss_pred ----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence 244566677888899999988888888888888877 8999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 237 ~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
..++|..++|.+++++.+..||++.|++.+++.+++.+..+.
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888877777665544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-10 Score=119.65 Aligned_cols=174 Identities=15% Similarity=0.053 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
.+.+.+..++..++++++..+++.|+.+ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 4455555566678888899999999976 799999999999999999999999999999996 99999988877777766
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhhh
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR 229 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~ 229 (549)
.++.... .+..... .++.|++.+...+.......+.+++ +. +++
T Consensus 285 ~~~~~~~---------------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~ 329 (393)
T PRK09705 285 CGFIWLP---------------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGK 329 (393)
T ss_pred HHHHHcc---------------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHH
Confidence 5543220 1111221 2356777777777777677788753 34 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHhccc
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~~~ 281 (549)
.+++.+...++++.++|.+.+++.+..| |...|++.+++.++..+..+...+
T Consensus 330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999876 888888877777666666555433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=121.31 Aligned_cols=167 Identities=10% Similarity=-0.009 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~ 153 (549)
+....++....++.+..++|.|+.+ .|++..+.+.....+.++..++.++.|+++||+ |||+.+.++.+...++.+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 302 (406)
T PRK11551 225 LWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAAL 302 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666777888888865 799999999999999999999999999999997 99999887666555554444
Q ss_pred HhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 008902 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
... .+...+.+..++.|++.++..+...++..|.+|+++ |++..++
T Consensus 303 ~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 348 (406)
T PRK11551 303 AAA----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGA 348 (406)
T ss_pred Hhc----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhH
Confidence 332 233444555567777777778888899999999988 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHH
Q 008902 234 FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~ 276 (549)
++....+|..++|.+.+++.++.+ |...+++...+.+++.+..
T Consensus 349 ~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 349 AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654 5556655555554444443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=106.60 Aligned_cols=131 Identities=20% Similarity=0.232 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHH
Q 008902 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (549)
Q Consensus 113 ~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (549)
.+.++..++.++.|+++||+ |||+++.++..+..++.+++... .+...+.+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~ 56 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLII 56 (141)
T ss_pred eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHHH
Confidence 45567788899999999997 99999999988888777766553 34566777
Q ss_pred HHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q 008902 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~ 272 (549)
.+++.|++.+...+....+..|.+|+++ |++..++.+....+|..+++.+.+++.+..+|++.|++..+...+.
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 8889999999888999999999999988 9999999999999999999999999998889999998877766666
Q ss_pred HHHHHh
Q 008902 273 NMLFFI 278 (549)
Q Consensus 273 ~i~~~~ 278 (549)
.+....
T Consensus 131 ~~~~~~ 136 (141)
T TIGR00880 131 FILLAF 136 (141)
T ss_pred HHHHhh
Confidence 555443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=125.80 Aligned_cols=150 Identities=16% Similarity=0.119 Sum_probs=114.8
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q 008902 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (549)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~ 166 (549)
.+..++|.|+++++|++..+++.+.+...++..++.+++|+++||+ |||+++.++.++..++.+++.....
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4667899999989999999999999999999999999999999997 9999988877665554433322200
Q ss_pred CCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 008902 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 246 (549)
.+...+.+..++.++...+..+..++++.|.+|++. |++.+++++...++|+.++|
T Consensus 364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp 419 (496)
T PRK03893 364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP 419 (496)
T ss_pred ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence 223333333344333333445677788899999877 99999999999999999999
Q ss_pred HHHHHHhhhhchhHHHHHHHHHH
Q 008902 247 TLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 247 ~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
.+.+++.+..||+..+.+.+++.
T Consensus 420 ~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 420 ILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999988776554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-11 Score=122.70 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=126.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
.+|+.+.......++..+..+++..+++.|+.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~ 313 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA 313 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence 4444444444444455555667778899999999999999999999999999999999999999997 999998887765
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..+....+... . .+...+.++.++.+++.++..+..++++.|.+|++.
T Consensus 314 ~~~~~~~~~~~-~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 361 (405)
T TIGR00891 314 GQLLIIPVFAI-G--------------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ----- 361 (405)
T ss_pred HHHHHHHHHHh-C--------------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence 53322222111 0 234455555566677667777888889999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHH
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 264 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i 264 (549)
|++.+++.+...++|+.++|.+.|++.+..| |+..+..
T Consensus 362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999988 8766654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-10 Score=117.94 Aligned_cols=172 Identities=15% Similarity=-0.032 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~ 151 (549)
+...+..++.....++...+++.|+.+.+|.+..+++.+.....++..++.++.|+++||+ |||+.+ ++..+..++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~ 285 (390)
T PRK03545 208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLL 285 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHH
Confidence 3334444555556666677888899888999999999998889999999999999999997 987644 44444433333
Q ss_pred HHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 008902 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++.... .+...+++..++.|++.+...+.....+.+..| +. |++++
T Consensus 286 ~l~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~ 331 (390)
T PRK03545 286 LLLPAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAM 331 (390)
T ss_pred HHHHHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHH
Confidence 322210 244556666777888877766667777777766 35 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
++++...++|..+||.+.|++.++.|++..|++.+++.+++++.....
T Consensus 332 g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 332 ALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 998888999999999999999999999999998888887777776553
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-10 Score=120.11 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008902 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (549)
Q Consensus 80 ~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~ 159 (549)
+..+.+..+..+.+.|+.+ .+++. .+.....+.++..++.++.|++.||+ |||+.+.++..+..++.+++.+.
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--- 299 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA--- 299 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc---
Confidence 3345555666777888764 45543 44555667777888999999999997 99999998888877777665543
Q ss_pred ccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 008902 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (549)
.+...++++.++.|++.+...+...+...|.+|+++ |++.+++++...+
T Consensus 300 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (392)
T PRK12382 300 -------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD 348 (392)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 234556667788888888888888888899998877 9999999999999
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 240 lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
+|..++|.+.+++.++.||+..|.+.+++.+++.++.+.
T Consensus 349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888877777766554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=120.91 Aligned_cols=160 Identities=12% Similarity=-0.021 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccC
Q 008902 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (549)
Q Consensus 85 ~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~ 164 (549)
.+++..+++.|+++.+|.+....+.+.+.+.++..++.++.++++||. ++++.+.++.++..++.+++.+.
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM-------- 309 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence 346677889999888999999999999999999999999999999985 77888888877777766655443
Q ss_pred CCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 008902 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (549)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i 244 (549)
.+.....++.++.|++.+...+...+++.|.+|++. |++.+++++...++|..+
T Consensus 310 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~ 363 (417)
T PRK10489 310 --------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAI 363 (417)
T ss_pred --------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhH
Confidence 344555667777888887777777888999999877 999999999999999999
Q ss_pred HHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 245 ~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
+|.+.|++.+..|++..+++.+++..+..++....
T Consensus 364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888876666555544444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=121.57 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCC--------hhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s--------~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
.++..++..........+++.|+.+ .|.+ ....+...+...+...++.++.|+++||+ |||+++.++.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~ 290 (418)
T TIGR00889 213 FFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVA 290 (418)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 3334444444444455667778754 4433 35567888888888999999999999997 999999999988
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++..++..... +..+...+++..++.|++.+...++...+++|.+|++.
T Consensus 291 ~~v~~~l~~~~~~------------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~----- 341 (418)
T TIGR00889 291 WALRFGFFAYGDP------------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI----- 341 (418)
T ss_pred HHHHHHHHHHcCc------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence 8877666554210 00134556677888999988888888999999999888
Q ss_pred hhhhHHHHHH-HHHHHHHHHHHHHHHHHhhh------hchhHHHHHHHHHHHHHHHHHHhc
Q 008902 226 HLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 226 ~r~~~~~~~~-~~~~lg~~i~~~i~~~l~~~------~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
|++.+++++ ....+|..++|.++|++.+. .||+..|.+.+++.+++.++++..
T Consensus 342 -~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 342 -RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 56789999999999999887 469999988777766666555443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-09 Score=108.52 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~ 153 (549)
+....++..+.+-...++++.|+.+ .|+|..+.|.+.+...+...+.+++.|+++||...++|.+.+..++..+...+.
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555566788999875 679999999999999999999999999999998457777776666555443333
Q ss_pred HhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 008902 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
... .+.+.+++..++..+......|...++.-+...+
T Consensus 86 ~~~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~ 122 (400)
T PF03825_consen 86 AFS----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD 122 (400)
T ss_pred HHh----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence 322 2445555556667777777777777777776654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-10 Score=120.03 Aligned_cols=161 Identities=15% Similarity=0.068 Sum_probs=112.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
+|+.....+...++....++++..++|.|+++.+|++..+++.....+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~ 314 (434)
T PRK15075 236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLA 314 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 343333334445556677888889999999999999998888888788888899999999999997 9999887765443
Q ss_pred HHHHHH-HHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 147 LAGLTG-ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~ig~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+...+ +..... . .+.....+..++.+++.+...+...++..|.+|++.
T Consensus 315 ~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~----- 364 (434)
T PRK15075 315 ILTAYPALSWLVA------A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV----- 364 (434)
T ss_pred HHHHHHHHHHHHc------C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence 322211 111100 0 122233333445556666666666788899999988
Q ss_pred hhhhHHHHHHH-HHHHHHHHHHHHHHHHhhhhchh
Q 008902 226 HLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEHGWG 259 (549)
Q Consensus 226 ~r~~~~~~~~~-~~~lg~~i~~~i~~~l~~~~gw~ 259 (549)
|++++++.+. +..+++.++|.+.+++.+..|+.
T Consensus 365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 9999998544 44456888999999999988853
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=123.48 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhhHhc---CCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008902 83 MAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (549)
Q Consensus 83 ~~~~~v~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~ 159 (549)
+.+.....+++.|+.+.+ +.+....+.+.+...+...++.+++|+++||+ |||+.+.++.++..++.+++.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~--- 312 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA--- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc---
Confidence 334344445777776654 45556677888888888889999999999997 99999998888888877776654
Q ss_pred ccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH-HHHHH
Q 008902 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSV 238 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-~~~~~ 238 (549)
.+...+++.+++.+++.+...+....++.|.+|++. +++..+. ++...
T Consensus 313 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~ 361 (420)
T PRK09528 313 -------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAK 361 (420)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHH
Confidence 345666777888888888777777888999999877 7777655 67788
Q ss_pred HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 239 ~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
.+|..+++.+.|++.+..||+..|.+.+++.++..++.+
T Consensus 362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999987766655554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=123.95 Aligned_cols=181 Identities=15% Similarity=0.077 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++...+..++.....+++.+++|.|+++..|++...++.....+.+...++.+++|+++||+ |+++....+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 456666666666777788999999999999999999999888888899999999999999997 6543222332222211
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+....... .+. .+.....+..++.|++..+..........|.+|++. |++
T Consensus 331 ~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 381 (438)
T TIGR00712 331 TIAVIVYWM----NPA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 381 (438)
T ss_pred HHHHHHHHh----cCC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence 111111000 000 122223333444555433333333456679999877 999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcc
Q 008902 230 FFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 230 ~~~~~~~~~~lg~-~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~ 280 (549)
+.++++...++|+ +++|.+.|++.++.||...|++.++..+++++..+...
T Consensus 382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888875 68999999999999999999887776666666655543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-10 Score=116.36 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008902 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 83 ~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~ 162 (549)
+.+....+++|.|+++ .|.+....+...+...++..++.++.|+++||+ |||+.+.++.++..++.+.+. .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------ 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------ 284 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence 3444455678888865 689988888888888899999999999999997 999999888777776654432 1
Q ss_pred cCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 008902 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (549)
. ...+..+++.+++.+...|...+...|..|+++ ++...+.++...++|.
T Consensus 285 -----------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 -----------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred -----------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 1 122334556676666677888888889888765 6777777788889999
Q ss_pred HHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 243 ~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
.++|.++|++.++.+|++.|.+.+.+.++..+..
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988777666554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.4e-10 Score=115.22 Aligned_cols=169 Identities=9% Similarity=-0.069 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++..++..++...+++...++.+.|+++ +|.+....+...+...+...+..++.+++.||+ |+|+++.++.+...+.
T Consensus 206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~ 283 (382)
T TIGR00902 206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGR 283 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHH
Confidence 45666666677777888888899999965 899999999888888888899999999999997 9999999999999988
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++... ++...+++...+.|+..+...+....++.+. |+++ |++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~ 328 (382)
T TIGR00902 284 WAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAK 328 (382)
T ss_pred HHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHH
Confidence 8777654 4667778888999999999999999999987 7766 888
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 230 ~~~~~~-~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
+.++++ ....+|..+++.++|++.+..|+ ..|++.++..++++++.
T Consensus 329 ~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 329 LQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 888876 46789999999999999999886 56766666666555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.9e-10 Score=118.06 Aligned_cols=184 Identities=13% Similarity=0.060 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchh--HHHHHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTI 145 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~--~~i~i~~~~ 145 (549)
.|.+..-++..++.+-+...+......|.++++|++..+...+.....+...++.+++|++.||+ |-| +++.++.++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 35666677777888888889999999999999999999998888889999999999999999997 988 888877776
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..+..+.-.+ ...+..... .+.+.+++.-++.|+..|+.++..-++.+++.|+++
T Consensus 359 ~~~i~~~g~~-G~~~~~~g~-------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~----- 413 (477)
T PF11700_consen 359 WIIIPLYGLF-GFWPSFFGL-------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR----- 413 (477)
T ss_pred HHHHHHHHHH-HhhhcccCc-------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-----
Confidence 6432222111 000100000 344567777778999999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHh
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~ 278 (549)
.+.+|++|.+..-..+.+||++.+.+.+..| -|+++....+..+++++++..
T Consensus 414 -e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 414 -EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999998886 889998888888888777654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.9e-10 Score=116.24 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHH-HHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~-i~~~~~~i 148 (549)
.++...+..++....++++.+++|.|++ ++|++..+++.+.....++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence 3555566677777888899999999985 5899999988888888899999999999999997 9888764 23332333
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+.+..... ... .+....++..++.|++.+...+ ..+...|..| ++ |+
T Consensus 301 ~~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g 349 (402)
T TIGR00897 301 FTLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KG 349 (402)
T ss_pred HHHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hH
Confidence 3222222100 000 2344455666677777776544 3455666544 45 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
+.+++++...++|..++|.+.+++.+..||...|++.+++.+++.++..+
T Consensus 350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777666555433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.3e-10 Score=117.27 Aligned_cols=173 Identities=10% Similarity=0.021 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Q 008902 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (549)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~ 154 (549)
....++....+|++.+++|.|+.+.+|++..+++...+....+..++.++.|+++||+ |||+++.++.++..+..+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~ 327 (432)
T PRK10406 249 LGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPIL 327 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHH
Confidence 3334444677889999999999999999988888878777777788888999999997 999988776654433332221
Q ss_pred hhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 008902 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (549)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~ 234 (549)
.... .. .+....+....+..++.+...+....+.+|.||++. |++++++.
T Consensus 328 ~~~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~ 377 (432)
T PRK10406 328 SALQ-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLS 377 (432)
T ss_pred HHHH-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHH
Confidence 1100 00 111211111222222333334556778899999998 99999997
Q ss_pred HHHHH-HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 235 YLSVT-VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 235 ~~~~~-lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
|...+ +++..+|.+.+++.....|...+++.++..+++++..++
T Consensus 378 ~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 378 YAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 76544 445568888886644333655666555555555554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-09 Score=118.97 Aligned_cols=172 Identities=10% Similarity=0.070 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHH-HHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q 008902 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 78 ~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~-~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~ 156 (549)
.++..+..+....+.+.|+.+.+|++..+.+.... ...++..++.+++|+++||+ |||+.+.++.++..++.+.+...
T Consensus 231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l 309 (491)
T PRK11010 231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL 309 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566566677888988889999999998874 55678999999999999997 99998877666555544333221
Q ss_pred hhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 008902 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (549)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~ 236 (549)
... + .+...+.+..++..+..|...+...++..+..+++. +++.+++.+.
T Consensus 310 ~~~----~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s 359 (491)
T PRK11010 310 SIT----D--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSA 359 (491)
T ss_pred Hhc----c--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Confidence 110 0 123333344444444444444666788888998887 7888899998
Q ss_pred HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcc
Q 008902 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 237 ~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~ 280 (549)
..++|..+++.++|++.+..||+..|.+.+++.+++++.....+
T Consensus 360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999988888877777665543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=118.20 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH--HHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT--IYL 147 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~--~~~ 147 (549)
.++.+.+..++.....+++..+++.|+.+.+|++..+++...+.+.++..++.+++|+++||..+||+....... ...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 456666677777777778888999999999999999999999999999999999999999986344443322211 111
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++....... +. .+.....+..++.|+...+..+....+..|.+|++. |
T Consensus 297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 344 (379)
T TIGR00881 297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A 344 (379)
T ss_pred HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence 121111111 00 233444455556666665666666778899999888 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHH
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f 262 (549)
++..++++...++|..++|.+.|++.++.||++.|
T Consensus 345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999999998654
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-10 Score=118.81 Aligned_cols=186 Identities=12% Similarity=-0.021 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
+.++..++..+......+.+..+.+ ++.+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 361 (481)
T TIGR00879 284 RLFLGVVLQWFQQFTGINAIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAI 361 (481)
T ss_pred HHHHHHHHHHHHHHhCCeehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 3344444444443333433444444 45567899888888888888889999999999999997 999999988887777
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+++.+..... ..+. ....+...+....++.+....+..+....+..|.+|++. |+
T Consensus 362 ~~~~~~~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~ 418 (481)
T TIGR00879 362 CLFVLGILGASF-VTGS----------------SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RP 418 (481)
T ss_pred HHHHHHHHhhcc-cCCc----------------ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HH
Confidence 766665321100 0000 000122222222222222222334666677799999887 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
+..++.+...++|++++|.+.+++.++.+|++.|++.+++.+++.++.+..
T Consensus 419 ~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 469 (481)
T TIGR00879 419 KGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF 469 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhee
Confidence 999999999999999999999999998899999988777766666655443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-10 Score=119.86 Aligned_cols=175 Identities=11% Similarity=0.038 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhH-----HHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTI 145 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~-----~i~i~~~~ 145 (549)
++.+.+..++.....+.+..+++.|+.+.+|++..+++...+.+.++..++.+++|+++||+ |||+ ........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 34444444444555566777899999999999999999999999999999999999999997 8752 22211111
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+.+...+.+... .+....++..++.+++.+...+...++..+..| +.
T Consensus 333 ~l~~i~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~----- 380 (476)
T PLN00028 333 TLGGVFCIWLGRA--------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS----- 380 (476)
T ss_pred HHHHHHHHHhccc--------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence 1111111111100 123333444445555554444445555556544 34
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcc
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~ 280 (549)
++...++.+.+.++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 888888887777788877776644 22344699999988887777777766554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-08 Score=106.58 Aligned_cols=179 Identities=12% Similarity=0.092 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh---cchhHH-HHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWT-IAIFTTI 145 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GR~~~-i~i~~~~ 145 (549)
.-+.-.+..+...+.+-.+..++..|.++.+|++...++.+..+.-+.-++.-|+.|.++||. |||+|- ++++.+.
T Consensus 13 eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip 92 (467)
T COG2211 13 EKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIP 92 (467)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHH
Confidence 334445556667778878889999999999999999999999999999999999999999985 587664 4566677
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
+.+..+++..+.. .+. +......++...+.+++...+.....++.+++.++.+ |
T Consensus 93 ~~i~~~l~F~~p~---------~~~-------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--E-- 146 (467)
T COG2211 93 FAIVAVLLFITPD---------FSM-------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--E-- 146 (467)
T ss_pred HHHHHHHHHcCCC---------ccc-------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH--H--
Confidence 7777777766521 000 1244455566678889999999999999999987632 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------hhchhHHHHHHHHHHHHHHHH
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~-------~~gw~~~f~i~~~~~~~~~i~ 275 (549)
|.+..++-.+..++|..+...+.+.+.. ..||+..-++.+++.++.++.
T Consensus 147 -R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~ 202 (467)
T COG2211 147 -RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLF 202 (467)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999888888887777666655442 235665555444444444433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.4e-10 Score=106.90 Aligned_cols=178 Identities=17% Similarity=0.105 Sum_probs=138.9
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHH
Q 008902 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~ 140 (549)
...+..-...+|.+..+.++...+.+-+.+..+.++++.+|+|+..++.+.+...+++.+..++.|.++|++ ||+...+
T Consensus 256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv 334 (459)
T KOG4686|consen 256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWV 334 (459)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhH
Confidence 444444445788888888888888888888899999999999999999999999999999999999999998 9998777
Q ss_pred HHHHHHH-HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 008902 141 IFTTIYL-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 141 i~~~~~~-ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
.+..+.+ ++..+++++. ..-+++..++|+..........+.++-..|++
T Consensus 335 ~~a~~~tl~~H~~l~Ft~------------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~ 384 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFTF------------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE 384 (459)
T ss_pred HHHHHHHHHHhhhHHhhh------------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence 6655444 4555555531 22346666778877776666788888899988
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc---hhHHHHHHHHHHHHHHHH
Q 008902 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNML 275 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g---w~~~f~i~~~~~~~~~i~ 275 (549)
+ .|++++..+...|+|-.+.|++++.+.+.-| |--.|.+....+.+..+.
T Consensus 385 q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svg 437 (459)
T KOG4686|consen 385 Q------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVG 437 (459)
T ss_pred H------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999999988655 444555544444443333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=120.46 Aligned_cols=172 Identities=7% Similarity=-0.003 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh-cchhHHHHHHHHHHH-
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIYL- 147 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~-~GR~~~i~i~~~~~~- 147 (549)
.++......++..++++....+++.|+++ +|++..+++.+.+...++..++.+++|+++||. +++++...++.....
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 45666666677777888888899999865 799999999999999999999999999999984 244444433332222
Q ss_pred -HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 148 -ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
++.+++... .+...+++.+++.|++.+...++..+++.|.+|+++
T Consensus 321 ~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------ 366 (455)
T TIGR00892 321 GLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------ 366 (455)
T ss_pred HHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------
Confidence 222222222 355667778889999999988999999999999877
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHH
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~-gw~~~f~i~~~~~~~~~i~~ 276 (549)
+++.+++++...++|..++|.+.|++.+.. +|++.|++.++..+++.+..
T Consensus 367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999998877 59999998887766665543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-09 Score=109.52 Aligned_cols=163 Identities=10% Similarity=-0.004 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
+..+...+..++...+-.++..|++.|+.+. +|++..+++...+.+.++..++.+++++++||+ |++|++.++.++.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 3455555666665555667888999999854 799999999999999999999999999999997 9999988888777
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
+++.++.... .+.. ...+.++.|++.+...|...+...+.++++. +
T Consensus 219 ~~~~~l~~~~----------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-~---- 264 (310)
T TIGR01272 219 VLLSIGAALT----------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-S---- 264 (310)
T ss_pred HHHHHHHHHc----------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-h----
Confidence 7766444332 1111 2235557899999999999998888887643 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
++++ +. ....+|+++.|.+.|.+.|..|.+.+|++..++.
T Consensus 265 ~asa--i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 265 QGSG--IL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred hhHH--HH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4443 33 4566899999999999999999888887655543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=115.74 Aligned_cols=178 Identities=17% Similarity=0.083 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHH--------
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-------- 139 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i-------- 139 (549)
++.++.+.+..++....++.+.+++|.|+.+.+|++..+++...+...++..++.+++|+++||+ ++|+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence 45688888888999999999999999999999999999999999999999999999999999986 543211
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 008902 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
..+......+..++..... . .+....++...+.+.+.++..+.......|..|.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 392 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR- 392 (465)
T ss_pred HHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-
Confidence 1111111111111111100 0 1223333334444445454444444444565553
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh---hchhHHHHHHHHHHHHHHHHHHh
Q 008902 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~---~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
. ++...++.+...++|+.++|.+.+++.+. .+|...|.+.++..+++.++...
T Consensus 393 ~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 4 89999999999999999999999988764 34888888888777777665543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-09 Score=108.19 Aligned_cols=177 Identities=15% Similarity=0.075 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++......++...+.|...+++-+|+++..|++....+++...|.++..++.+++|+++|| +.++++.....+..+.
T Consensus 212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~ 289 (394)
T COG2814 212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALA 289 (394)
T ss_pred hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHH
Confidence 57888888889899999999999999999999999999999999999999999999999998 8888888887777776
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+.. .+.....+..++.|+..+........-.++.. ++. ++.
T Consensus 290 ~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~ 335 (394)
T COG2814 290 LLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADL 335 (394)
T ss_pred HHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHH
Confidence 66665542 23445555555666666555444445555522 344 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcccc
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~ 282 (549)
..+++..+.|+|..+|..++|.+.++.|+....++.++..++++++.+..++.
T Consensus 336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999888888877665443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-07 Score=99.99 Aligned_cols=142 Identities=15% Similarity=0.084 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhcchhHHH-HHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhh
Q 008902 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186 (549)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i-~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (549)
+...++..+...+..|+-|-++|+- |+||.+ .++.++..+...++.+.. | .+
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~------~--------------------~~ 125 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS------P--------------------GQ 125 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC------c--------------------ch
Confidence 4556777788888889999999975 655544 455555555666655541 1 23
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh--------------------hhhhhHHHHHHHHHHHHHHHHH
Q 008902 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK--------------------THLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 187 ~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~--------------------~~r~~~~~~~~~~~~lg~~i~~ 246 (549)
.....+..++.-++.+.......+++.|+.+++..... ..|++..++-+...++|+.+..
T Consensus 126 ~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l 205 (477)
T PF11700_consen 126 WWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVAL 205 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 33323333344566677778889999999988762000 0015665665566677777776
Q ss_pred HHHHHHhhh--------hchhHHHHHHHHHHHHHHHHH
Q 008902 247 TLVVYIQME--------HGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 247 ~i~~~l~~~--------~gw~~~f~i~~~~~~~~~i~~ 276 (549)
++.-.+... .+.|..+.+.++..++..+-.
T Consensus 206 ~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~ 243 (477)
T PF11700_consen 206 LISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPL 243 (477)
T ss_pred HHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHH
Confidence 665443221 234666666665544444333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-09 Score=110.70 Aligned_cols=150 Identities=15% Similarity=0.032 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008902 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 83 ~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~ 162 (549)
...+.+..+++.|+.+ .|.+....+...+...++..++.+++|+++||+ |||+++.++.++..++.+++.....
T Consensus 245 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 318 (426)
T PRK12307 245 GANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ---- 318 (426)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc----
Confidence 3444567788988876 588988888888888899999999999999997 9999998887766655444332200
Q ss_pred cCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 008902 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (549)
.....+....+..+++..+..+..+.++.|.+|++. |++++++.+...++|+
T Consensus 319 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~ 370 (426)
T PRK12307 319 ----------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSG 370 (426)
T ss_pred ----------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHH
Confidence 112222222222233333444566778899999887 9999999999999999
Q ss_pred HHHHHHHHHHhhhhchhHHHHHHH
Q 008902 243 IVAFTLVVYIQMEHGWGSAFGALA 266 (549)
Q Consensus 243 ~i~~~i~~~l~~~~gw~~~f~i~~ 266 (549)
.++|.+.+++.+..|+....++..
T Consensus 371 ~~gp~~~g~l~~~~g~~~~~~~~~ 394 (426)
T PRK12307 371 TFNSMAATWLGITMGLGAALTFIV 394 (426)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999888665444333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=110.17 Aligned_cols=180 Identities=14% Similarity=0.007 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
..|...+..+..--++.++..+++.|++++++.++.+++.....+.....+..++||+||||+ |.+|+.++....++++
T Consensus 219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 219 DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALA 297 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHH
Confidence 578888888888888999999999999999999999999999999999999999999999998 8888888777777777
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
...+.+... .... ..+...++...+.+++..|.-......++...|+++ -+.
T Consensus 298 ~~~l~~~~~--~~~~-------------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~ 349 (417)
T COG2223 298 AALLSLFLT--GFGH-------------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGA 349 (417)
T ss_pred HHHHHcccc--cccc-------------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhH
Confidence 766665421 0000 023344444444445555555555666666777653 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHh
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~ 278 (549)
..++.....++|++.-|...+...+..| +...|++...+.++++++...
T Consensus 350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888999999999999999888887 888998877777776665543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=115.24 Aligned_cols=164 Identities=8% Similarity=-0.074 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHH-HHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~-i~i~~~~~~ 147 (549)
.++...+..++....++++.+++|.|+++ ..+.+..+++.......++..++.+++|+++||+ |||+. +.+..++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 46777777788888899999999999977 3477888888888889999999999999999997 87664 333333333
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++. .+.... .+....+++..+.++|.....+.......|.+|++. |
T Consensus 322 ~~~-~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~ 367 (412)
T TIGR02332 322 AGW-LLASAT---------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------R 367 (412)
T ss_pred HHH-HHHHhc---------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------H
Confidence 332 111110 111112222223333333333334444567788777 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHH
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA 268 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~ 268 (549)
++++++.+...++|+.++|.+.+.+.+..| |+++|++.++.
T Consensus 368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999999999998775 99998876654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.5e-09 Score=110.98 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
+...+...++..+++.......+.|++..+|.+...++.......++..++.++.|+++||+ |||+++.++.++..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 44555666666666655566778888888999999999888888888888889999999997 99999998888777766
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
.++..... . .+...+.+..++.|++.+...+....+..+.+|++. ++..
T Consensus 342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 390 (471)
T PRK10504 342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG 390 (471)
T ss_pred HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence 55544311 0 223334455667788888888888889999999887 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~gw 258 (549)
++++++...+|..+++.+.+.+.+..|+
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988766554
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-09 Score=108.21 Aligned_cols=153 Identities=9% Similarity=0.005 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~-~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
++......++....+++.. ...+.|.++.+|.+..+.+.+.....++..++.++.|+++||+ ||++.+.++.++..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 4444555555556665565 6778888777999999999999999999999999999999997 9999988876666665
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++.... .+...+++..++.|++.+...+...+++.|.+|+++ |++
T Consensus 291 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 337 (365)
T TIGR00900 291 ILVVGLTP---------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR 337 (365)
T ss_pred HHHHHhhc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 55544330 125566777888999999988999999999999877 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g 257 (549)
.+++++...++|..++|.+.|++.++.|
T Consensus 338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 338 VFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999988654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-08 Score=106.57 Aligned_cols=170 Identities=11% Similarity=-0.104 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
++...+..++..+..+......+.|+.+.+|++..+.+.......++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 34444444444555556666778888889999998888777777778889999999999997 99999998888777777
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+++.+... ..+ .+...++++.++.|+|.+...+......... ++++ |++.
T Consensus 296 ~~~~~~~~---~~~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~ 345 (406)
T PRK15402 296 LLAALATV---ISS--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTV 345 (406)
T ss_pred HHHHHHHH---ccc--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHH
Confidence 76665421 000 2445566777888888887666665554333 3345 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHH
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~ 271 (549)
.+.+++...+|..+|+.+.+++.+..++....+..++..++
T Consensus 346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 386 (406)
T PRK15402 346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLL 386 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHH
Confidence 99999999999999999999998877765544444433333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-09 Score=111.60 Aligned_cols=149 Identities=14% Similarity=0.024 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
++..+...+..++....++.+..+++ |+.+++|.+..+++.......++..++.+++|+++||+ |||+.+....+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 326 (398)
T TIGR00895 249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHH
Confidence 34455555566667777777777877 66778999999999999999999999999999999997 99855444333332
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+..++.... .+...+++..++.|++.++..+...++.+|.+|++. |
T Consensus 327 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 372 (398)
T TIGR00895 327 FAVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R 372 (398)
T ss_pred HHHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence 222222211 234455667778899999889999999999999887 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l 252 (549)
++.+++++....+|..++|.+.|++
T Consensus 373 g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 373 ATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999875
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=107.34 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhc---CCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l---~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
+..++..++....+.....+.+.|+.+.+ +.+....+...+...+...++.++.|++.||+ |||+.+.++.++..+
T Consensus 218 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l 296 (396)
T TIGR00882 218 WMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSV 296 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHH
Confidence 33334444444445455556788887766 44555667777777778888889999999997 999999998888777
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+..+.... .+...+++..++.|++..........+..+.++++. ++
T Consensus 297 ~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a 342 (396)
T TIGR00882 297 RIIGSSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SA 342 (396)
T ss_pred HHHHHHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EE
Confidence 66655443 345556667777887776655555566777777766 77
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 229 RFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 229 ~~~~~-~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
+..+. ++....+|+.+++.+.|++.+..||+..|.+.+++.++..++-
T Consensus 343 t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 343 TIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred EeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 76666 6678999999999999999999999999998777766655543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-08 Score=104.59 Aligned_cols=167 Identities=7% Similarity=-0.097 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++...+..++....+....+.++.|+. +.|.+..+.+...+....+..+..++.|++.||+ |+++.+.++.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 3455555555555666667778888985 5899988888888887788888889999999997 9999999888887777
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++... ++.+.+++..++.|++.+...+....+..++ ++++ +++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~ 328 (382)
T PRK11128 284 WGLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR 328 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence 6655443 3566677778888888888777777777665 4444 667
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q 008902 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 230 ~~~~~~-~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i 274 (549)
..+++. ....+|..++|.++|++.+..|+. .|+..+++.+++++
T Consensus 329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~ 373 (382)
T PRK11128 329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHH
Confidence 777765 556778899999999999998874 55555555444433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-08 Score=104.46 Aligned_cols=169 Identities=11% Similarity=-0.007 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~ 151 (549)
+......++...+.+...++++.|+.+.+|++..+.+...+...++..++.++.|+++||+ |+++.+.++..+..++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~ 280 (382)
T PRK10091 202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence 3333334444445555566778888888999999999999999999999999999999997 999999888877777665
Q ss_pred HHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhh-ccCCCCCchhhhhhhhH
Q 008902 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA-DQFDERSKDYKTHLDRF 230 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a-d~~~~~~~~~~~~r~~~ 230 (549)
++.... .+.....+..++.++|.++..+....... +..+++. ++..
T Consensus 281 ~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~ 327 (382)
T PRK10091 281 MLFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA 327 (382)
T ss_pred HHHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH
Confidence 543321 12233344444555555444443333333 3333322 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hchhHHHHHHHHHHHHHHHHH
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~-~gw~~~f~i~~~~~~~~~i~~ 276 (549)
..+...++|..++|.++|++.+. .+|++.+.+.++..++.+..+
T Consensus 328 --~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 328 --GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 33566789999999999999885 679988888766655554444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-08 Score=104.32 Aligned_cols=174 Identities=7% Similarity=-0.091 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHH-HHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
++..+...++...+.....++.+.|+.+ .|++.++.+.+..... ....++.+++|+++||+ |+|+++.++.++..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 3334444455556666667777888875 7999999998877765 46667789999999997 9999988877655333
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~ 228 (549)
......... ... . .+....+....+.+++.+...+...+...+..++ +. ++
T Consensus 288 ~~~~~~~~~-~~~-~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g 339 (390)
T TIGR02718 288 ALLWFAQAA-FWL-A--------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AG 339 (390)
T ss_pred HHHHHHHHH-ccc-C--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hH
Confidence 222221110 000 0 1222333333444555666666677777677665 55 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i 274 (549)
+.+++++...++|..++|.++|++.+..||+..|.+.+++.+++.+
T Consensus 340 ~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 340 TDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999898887766655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.7e-09 Score=111.08 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++...+..++..+.+++...++|.|+++.+|.+..+++.......++..++.++.|+++||+ |||+.+.++.++..++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG 334 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence 344456666677788888888999999999999999999999889999999999999999997 9999999888888777
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
..++..... ++ .+...++...++.|+|.+...+.......+.+|+++ |++
T Consensus 335 ~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~ 384 (485)
T TIGR00711 335 FYWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IAR 384 (485)
T ss_pred HHHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhH
Confidence 766653211 10 234455566778899988877777777778888777 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~ 256 (549)
+.++++...++|+.+++.+.+.+.++.
T Consensus 385 ~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 385 GSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-08 Score=107.54 Aligned_cols=160 Identities=16% Similarity=0.062 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++..++..++..++++......+.|++..++ +....+.......++..++.++.++++||+ |||+++.++.++..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 45556666677777776665555666655566 455566666777888899999999999997 9999999998888877
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~ 228 (549)
.+++.+.. .+...+++..++.+++.+...+...++++|..+.++-+. ...++
T Consensus 301 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 353 (437)
T TIGR00792 301 YLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG 353 (437)
T ss_pred HHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence 76655431 234455666677889988888889999999887432110 11268
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw 258 (549)
..++++++...+|..+++.+.+++.+..||
T Consensus 354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999877665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=111.29 Aligned_cols=174 Identities=16% Similarity=0.087 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHH------------HHHHHHHHHHHHHhHHHHHhhhhcchhHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWT 138 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~------------~~~~~~~~~~~~~l~~G~laDr~~GR~~~ 138 (549)
.+.+....++..+.+|++..++|.+++ ..|++..+++. ......++..++.+++++++||+ |||++
T Consensus 290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~ 367 (502)
T TIGR00887 290 LLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPI 367 (502)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhH
Confidence 333344445566788888888888885 57776543211 12223345556778899999997 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 008902 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 139 i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
++++.++..++.+++.+.... . + .+ ..+....+...++..+..+....+.+|.+|+
T Consensus 368 l~~~~~~~~~~~~~l~~~~~~--~-~--------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~ 423 (502)
T TIGR00887 368 QLMGFFILTVLFFVLGFAYNH--L-S--------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPT 423 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--c-c--------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence 988887777666555543110 0 0 11 1111111112222233445566778999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh----------hchhHHHHHHHHHHHHHHHHH
Q 008902 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~----------~gw~~~f~i~~~~~~~~~i~~ 276 (549)
+. |+++.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+..
T Consensus 424 ~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 424 RY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred hH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 98 99999999999999999999999998773 334456666665555554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-07 Score=93.68 Aligned_cols=142 Identities=14% Similarity=0.024 Sum_probs=98.2
Q ss_pred hhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcc-----hhH-HHHHHHHHHHHHHHHHHhhhhhccccCCCCCc
Q 008902 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYW-TIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (549)
Q Consensus 96 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G-----R~~-~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~ 169 (549)
+..+++++....+..++....... ..+..|+.||+. + ||. -+..+.+++..+..+...+... +...
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~--l~~~---- 77 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLL--LAES---- 77 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHH--Hccc----
Confidence 345788888877777776665554 578899999986 5 443 4456666666666555544321 1110
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008902 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~ 249 (549)
......+.........++..+.|+|.+....+..++.+|..|+++ |.+..++.|...-+|..++.++.
T Consensus 78 ------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 78 ------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 000011111222344455567899999999999999999999988 99999999999999999999999
Q ss_pred HHHhhhhc
Q 008902 250 VYIQMEHG 257 (549)
Q Consensus 250 ~~l~~~~g 257 (549)
+.+.+.++
T Consensus 146 g~lL~~~s 153 (403)
T PF03209_consen 146 GRLLDPFS 153 (403)
T ss_pred HHHccccC
Confidence 98877765
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-08 Score=106.02 Aligned_cols=162 Identities=9% Similarity=-0.066 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccC
Q 008902 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (549)
Q Consensus 85 ~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~ 164 (549)
++.+..+.+ ++.+.+|++...+........+...++.+++|+++||+ |||+.+.++.++..++.++++.... +
T Consensus 287 ~~~~~~~~p-~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-----~ 359 (479)
T PRK10077 287 INVVLYYAP-EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-----T 359 (479)
T ss_pred hhHHHHHHH-HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-----c
Confidence 334444444 44467888877666666667778889999999999997 9999999999988888777664311 0
Q ss_pred CCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcc-cchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 008902 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (549)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 243 (549)
+ ........+..+.+++.+. ..++...+.+|.+|++. |++++++.+...++|..
T Consensus 360 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~ 414 (479)
T PRK10077 360 Q-------------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANY 414 (479)
T ss_pred C-------------------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHH
Confidence 0 0111222333344444433 33677889999999888 99999998888888888
Q ss_pred HHHHHHH------HHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 244 VAFTLVV------YIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 244 i~~~i~~------~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
+++.+.+ ++.+..+|++.|++.++..+++.++.+.
T Consensus 415 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
T PRK10077 415 FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455 (479)
T ss_pred HHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence 7765554 4446778888888776665555555444
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.4e-10 Score=105.75 Aligned_cols=156 Identities=15% Similarity=0.196 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
+..+.++..|...+.| ---..+..+.+...+++.++..++.+.|..-..+.+.++||+.||.+|-|..-.+-+.+..+|
T Consensus 45 ~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 4444444444444443 334456778888888888888899999999999999999999999999888666666667778
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.++.-.. ....+++.++|++.|+|.-....+.+.+..-+|..++ ...
T Consensus 124 qliFa~Ggi-------------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~ 172 (459)
T KOG4686|consen 124 QLIFAAGGI-------------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNF 172 (459)
T ss_pred HHHHHhchH-------------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccc
Confidence 777765322 1467889999999999988888888999999999888 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g 257 (549)
.|++......+|+.+-..+.+++.+..+
T Consensus 173 vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 173 VFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred hhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 9999888888888877777777776654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-08 Score=105.61 Aligned_cols=165 Identities=10% Similarity=0.018 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~ 152 (549)
..+..++.....+++..+++.|+ ++.+|+++.+++.....+.++..++.+++|+++||+ |||+++.++.++..++..+
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~ 341 (438)
T PRK10133 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence 34444555666666777888896 567899999999999999999999999999999997 9999998887766655444
Q ss_pred HHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 008902 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (549)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~ 232 (549)
..+. .+. ..+.+..+.|++.+...|+..+...+.++++. +.+.+
T Consensus 342 ~~~~----------------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~ 385 (438)
T PRK10133 342 SAFA----------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS 385 (438)
T ss_pred HHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence 3332 111 22445677899999999999999999987642 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHH
Q 008902 233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 233 ~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~ 276 (549)
+... ..+|+.++|.+.|++.+..| -+..|.+..++.+..++..
T Consensus 386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~~ 429 (438)
T PRK10133 386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_pred HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3322 33678888899999999887 7888887666655554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.2e-08 Score=101.65 Aligned_cols=154 Identities=14% Similarity=0.187 Sum_probs=102.0
Q ss_pred HHHHHHhhHhcCCChhHHHHHHHHHH-HHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCC
Q 008902 90 VNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (549)
Q Consensus 90 ~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~ 168 (549)
.+.+.|+.+++|++..+.+.+..... ++..++.+++|+++||+ |||+.+.++.++..+..+.+.+.... +
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~---- 300 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----P---- 300 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----C----
Confidence 34456777889999998888776544 46788999999999997 99998877776665554433322110 0
Q ss_pred ccccccccCCCCCcchhhHHHHHHHH----HHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 008902 169 CDRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (549)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i 244 (549)
.+...++++. +..+++.+...+....+..+.+|.++ + +++....++|..+
T Consensus 301 ----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~ 354 (402)
T PRK11902 301 ----------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVY 354 (402)
T ss_pred ----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHH
Confidence 1233333333 33455555556666666666666433 3 4444445677766
Q ss_pred HHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 245 ~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
+..++|++.+..||+..|.+.+++.++++++...
T Consensus 355 ~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 355 VGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999888877777665543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-08 Score=102.54 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.+..-+.+.++.+=+-.++.+....|..+.+|++..+...+.........++.+++|+|.||+ |-|+++.++.+++.+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 455555566666666667888889999999999999999999999999999999999999997 9999999998888775
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+...+. .....+++.-++.|+..|+.++..=++.+++.|+++ -++
T Consensus 332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~ 377 (438)
T COG2270 332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR 377 (438)
T ss_pred HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence 5544433 123445555568899999999999999999999988 799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHhc
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~ 279 (549)
+|++|.+.....+.+||...+.+.+..| -|.++....+...+++++++..
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence 9999999999999999999998887765 7888877777777777665443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=109.30 Aligned_cols=154 Identities=13% Similarity=0.053 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.+....+..++..+.+++...+++.|+++.+|.+..+++.......++..++.+++|++.||+ |||+.+..+.++..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS 338 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 455556666777777888888999999999999999999999999999999999999999997 9999988888887777
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++..... . .+....++..++.|+|.|...+.......+..|+++ ++.
T Consensus 339 ~~~l~~~~~------~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~ 387 (495)
T PRK14995 339 FYGLAMTDF------S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAA 387 (495)
T ss_pred HHHHHHhcC------C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cch
Confidence 766544311 0 233444566778899999888888888888888887 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQME 255 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~ 255 (549)
+.++++...++|+.+|+.+.+.+.++
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.2e-08 Score=102.90 Aligned_cols=183 Identities=13% Similarity=-0.019 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
..|...+..++..-+|.++..++|.|+++.+. ............+...+..+++|+||||+ |++|++.++.++..++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence 46777777788777777787789999988663 33333334445677888899999999997 9999999888877776
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc--------
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK-------- 221 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~-------- 221 (549)
..++.+.. |.. ...+...+.++.+.+.++.|...+....++.+.||++..
T Consensus 330 ~~~~~l~l--p~~--------------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 330 SALLFLTL--PGT--------------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred HHHHHHHh--ccc--------------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 64433321 100 013455666655555566666666667777777764100
Q ss_pred -------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHH
Q 008902 222 -------DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 222 -------~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~ 277 (549)
+.++.-+...++......+|+++-|.+.+...+..| +...|+...+..++++++-+
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 011135667778888888999999988777766554 88888877766666655543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-08 Score=104.12 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++...+..++...+++......+.|+++.+|.+....+.......++..++.++.++++||+ |+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 355566666666777777777777788888888766555544444566778899999999997 9999999999888888
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~ 228 (549)
.+++.+. +. .+.+.+++..++.++|.+...+...++.+|..|.++-+. ...++
T Consensus 308 ~~~~~~~-------~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G 361 (448)
T PRK09848 308 YLLFFWV-------SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG 361 (448)
T ss_pred HHHHHHc-------Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence 7666543 10 245556667778899999999999999999987654211 11147
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw 258 (549)
..++.+.+...+|..+++.+.+.+.+..||
T Consensus 362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788889999999999999998887655444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-08 Score=102.44 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++...+..++....++++..++|.|+++ .|.+..+.+...+...++..++.++.|+++||+-+||+++.++.++..++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 34555555566677788888899999975 79999999999999999999999999999999735666777777777777
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.... .+... ....+.|++.|...+...+...+..++++ .++.
T Consensus 277 ~~~~~~~~---------------------------~~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~ 322 (355)
T TIGR00896 277 LCGLLFAP---------------------------MHGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAA 322 (355)
T ss_pred HHHHHHhh---------------------------hhHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHH
Confidence 66555431 11111 13456789998888887777766655422 1677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc-hh
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WG 259 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~ 259 (549)
.+++.+...++|..++|.+.|++.++.| |.
T Consensus 323 ~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 323 LSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 8888888888999999999999998776 43
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-08 Score=104.62 Aligned_cols=188 Identities=13% Similarity=0.043 Sum_probs=138.3
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcch-hHHH
Q 008902 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTI 139 (549)
Q Consensus 62 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~-~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR-~~~i 139 (549)
...+.+||.+++..+..++..+.++.+.+..-.|+++ +.+-+....|+++++..++..++.++.|+.+.|. |+ |+-+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence 3456789999999999999998888777777778865 4666777889999999999999999999999996 74 6667
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 008902 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
..+.++.++|.++....... |+ ....+++++|++.|+|.|. ....=++++|....+
T Consensus 106 i~s~ii~~~g~llY~~l~~~----~~-------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYV----PN-------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTVE 161 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cc-------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCcc
Confidence 77888888888887333221 11 2567888999999999776 466678999988777
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh----hh--------h-chhHHHHHHHHHHHHHHHHHHhcc
Q 008902 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----ME--------H-GWGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~----~~--------~-gw~~~f~i~~~~~~~~~i~~~~~~ 280 (549)
+ |.++++....+..+|..+||.+...+. +. + -+..+-|+.++..++.++++.+..
T Consensus 162 d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f 229 (488)
T KOG2325|consen 162 D------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFF 229 (488)
T ss_pred c------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhe
Confidence 7 888888766666666666665554332 11 1 144566677766666666655543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.3e-08 Score=105.00 Aligned_cols=169 Identities=10% Similarity=0.045 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~ 153 (549)
++...++..+....+...+|.+..+.+|.+...-|.+.+++.++..++.++.+++.+|+ ++++.+..+.+++.++.+.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence 33334444444445566788899999999999999999999999999999999999986 99998888888887777777
Q ss_pred HhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 008902 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
++. .+.+..+++.++.|++.........+.+-...|++. ||+.+++
T Consensus 302 al~----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si 347 (524)
T PF05977_consen 302 ALS----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI 347 (524)
T ss_pred hcc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence 665 456666777788898888888888888888889888 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
++.....+..+|.++.|++.+..|-+..+.+++++++++.++..
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888877766655555543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.8e-08 Score=99.69 Aligned_cols=160 Identities=11% Similarity=0.041 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~ 153 (549)
..+...+....++....+.+.|+.+.+|.++.+.+.+.....++..++.+++|+++||+ |||+.+.++.++..++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~ 289 (385)
T TIGR00710 211 YALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLL 289 (385)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence 33334444555666777788899889999999999998889999999999999999997 99999988887777776665
Q ss_pred HhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 008902 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
...... + ......+++...+.|++.+...+.......|.+| +. +++..++
T Consensus 290 ~~~~~~----~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~ 339 (385)
T TIGR00710 290 EITAIL----G-------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASAL 339 (385)
T ss_pred HHHHHh----c-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHH
Confidence 543210 0 0123344455667788888888888888888876 34 7888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchhHHHHH
Q 008902 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 264 (549)
Q Consensus 234 ~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i 264 (549)
++.....++.+.+.+.+.+.+..+|...+..
T Consensus 340 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 340 FGTLRLVLGAIVGYLVSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHHHhccccChHHHHHHH
Confidence 7776655444444445555555555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-08 Score=117.57 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh-HHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~-~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
++..++..++..+..+.+..+++.|+.+.+|++.. ..+.+.+...++..++.+++|+++||+ ++++++.++.++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence 33344444444455556777889999999999998 889999999999999999999999997 9999888888777776
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.+. .+...++++.++.|++.+...+...+++.+.+|++. |++
T Consensus 313 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~ 358 (1146)
T PRK08633 313 LFLLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK 358 (1146)
T ss_pred HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence 6665543 345566677788899999888888999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAI 267 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~-~~gw~~~f~i~~~ 267 (549)
+++++++..++|.++++.+++.+.. ..++...|++.++
T Consensus 359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999998888877766543 2345455554443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-07 Score=98.85 Aligned_cols=167 Identities=10% Similarity=-0.001 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
++......++.....++..++++.++.+++|++..+.+.....+.++..++.++.|++.||. +|+ .+.++.++..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHH
Confidence 34444444555555556666664555567899999999988889999999999999999984 544 4333433333332
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
.++.... .+...+.+..++.|++.+...+...+++.+..|+ + +++.
T Consensus 296 ~~l~~~~---------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~ 341 (394)
T PRK10213 296 LVLTLWG---------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKA 341 (394)
T ss_pred HHHHHHh---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHH
Confidence 2222221 2345556677788999988888888888888774 3 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~ 273 (549)
.+.+....++|..+|+.++|++.+..|++..+..+++..++..
T Consensus 342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence 5566667789999999999999999998888877665544443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.7e-08 Score=102.96 Aligned_cols=173 Identities=12% Similarity=-0.010 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHh--cCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~--l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
++...+..++..+.+.....+.+.|+... .+.+....+.+............++.|++.||+ |||+.+.++.++..+
T Consensus 208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~ 286 (395)
T PRK10054 208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVI 286 (395)
T ss_pred ehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHH
Confidence 34444445555555555555667777543 344455556666666666666677889999997 999999888887777
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+...+.+.. .+...++++..+.++|.+...|...+.+.+..|++. |+
T Consensus 287 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~ 333 (395)
T PRK10054 287 GLVGFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KA 333 (395)
T ss_pred HHHHHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ce
Confidence 776665431 244555667778889988878888888999999877 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
++++... ...+|..++|.++|++.+..|....|++.+++..++.++.+.
T Consensus 334 ~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 382 (395)
T PRK10054 334 SYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLK 382 (395)
T ss_pred ehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHh
Confidence 8877644 566899999999999999999888888776666666555543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=99.66 Aligned_cols=191 Identities=14% Similarity=0.082 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
+....++...++..+.-.....+..+.+-+.-|++..++..+.........+..+++.++-||+ |||+.++++..++.+
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~ 347 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAV 347 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence 4566666667776666555555667777778899999999999999999999999999999997 999999999999998
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhc-ccchhhhhhhhccCCCCCchhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
..+++.....+.....+ .-....+++.++..++.+ +.-|...-+.+|++|++. |
T Consensus 348 ~~~~~~~~~~l~~~~~~-------------------~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R 402 (485)
T KOG0569|consen 348 ALLLMSIALFLSNSFGS-------------------WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------R 402 (485)
T ss_pred HHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------h
Confidence 88887776442100000 000112333333333333 234666677899999988 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcccccccc
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~ 286 (549)
..++++-.....+..++..+.-..+.+..|- +.|.+.++..++..+..+...|+.+.+
T Consensus 403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 9998887666666666665665666666664 456666666666666666555555443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-08 Score=101.48 Aligned_cols=153 Identities=11% Similarity=0.025 Sum_probs=105.7
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q 008902 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (549)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~ 166 (549)
....++|.|+++..+ ++.+.+...+...++...+....+++.||.++.++.+..+.++..++.+++...
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---------- 294 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---------- 294 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence 345677888877666 556667666666555554444445666554476666777777777776655543
Q ss_pred CCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 008902 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 246 (549)
.+...+.+...+.+++.+...+...++..|..|++. |++.+++++...++|..+||
T Consensus 295 ------------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~ 350 (400)
T PRK11646 295 ------------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGY 350 (400)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcc
Confidence 234445555567778887777888899999999888 99999999999999999999
Q ss_pred HHHHHHhhhh---c-hhHHHHHHHHHHHHHHH
Q 008902 247 TLVVYIQMEH---G-WGSAFGALAIAMGISNM 274 (549)
Q Consensus 247 ~i~~~l~~~~---g-w~~~f~i~~~~~~~~~i 274 (549)
.+.|++.++. + ....+++..+..+++.+
T Consensus 351 ~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 351 IGGGWLFDLGKALNQPELPWMMLGIIGLITLL 382 (400)
T ss_pred cchHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 9999998764 2 23444444444444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-08 Score=97.79 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc---CC---------------Ch--hHHHHHHHHHHHHHHHHHhHHHHHh
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVM---HK---------------SF--ADSSNAVNNFLGISQASSVLGGFLA 129 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l---~~---------------s~--~~a~~~~~~~~~~~~~~~l~~G~la 129 (549)
..+.+..+-|.+++.||++.-. .+-+.+.- +. .. ..--.=..+....-+-|.++.+++-
T Consensus 327 ttlllw~iwfgnafsyyg~VLl-ttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 327 TTLLLWRIWFGNAFSYYGSVLL-TTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH-HHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 4455666677788999988753 32222211 11 11 1111123345567778899999999
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhh
Q 008902 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVS 209 (549)
Q Consensus 130 Dr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 209 (549)
||+ |||+++..+.+++.+.++++..+.. +. .-..+++.+|+++. +...+.+
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~~-----------------------rn-~~tvllf~arafis----g~fqvaY 456 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-----------------------RN-AYTVLLFTARAFIS----GAFQVAY 456 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhcC-----------------------cc-hhHHHHHHHHHHHh----chheEEE
Confidence 996 9999999999999888877765411 00 12344556665543 4445677
Q ss_pred hhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008902 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 210 ~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~ 249 (549)
.+-.|.+|+.. |+++.+.-....-+|++++|.++
T Consensus 457 vYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 457 VYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred EecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 88899999998 99999999999999999999998
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-08 Score=104.80 Aligned_cols=177 Identities=13% Similarity=0.100 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcc-------hhHHHH-
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-------RYWTIA- 140 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G-------R~~~i~- 140 (549)
+.+|.+.+..+++..+++.+..++|+|+.+.+|++..+.|...+.-.+...+..+++|.+||+... +||.+-
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 369999999999999999999999999999999999999999999999999999999999998733 122221
Q ss_pred HHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 008902 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 141 i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
++.....++.+.+.+. +|++ . ......+.++..+.|+..++..-+ ..|..| +.
T Consensus 338 i~~~~~ai~l~~l~~~-----------~~~~----------~-~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~ap-q~ 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFT-----------SDEH----------R-LLAVILLTIAIGLSGFNISGFYKN----HQDIAP-QH 390 (466)
T ss_pred HHHHHHHHHHHeeeec-----------CCCc----------c-hHHHHHHHHHHHHcccchhhhHhh----hhhccc-hH
Confidence 2222222222222221 1110 0 011111222222222222222211 112223 22
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh---hchhHHHHHHHHHHHHHHHHHHh
Q 008902 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~---~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
-+..+++.+...++.+.++|.+.+.+..+ ..|+..|++.++..+++.+++.+
T Consensus 391 ------a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 391 ------AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 68888999999999999999999998832 36999999999998888877654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-07 Score=98.03 Aligned_cols=165 Identities=10% Similarity=-0.033 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcch---hHHHHH-HHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR---YWTIAI-FTTI 145 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR---~~~i~i-~~~~ 145 (549)
.++.+.+..++....+|++.+|+|.|+++ .|++.. ++........... +..++++||+ .| |+.... ..++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~~ 266 (368)
T TIGR00903 193 DLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAALL 266 (368)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHHH
Confidence 56788888899999999999999999965 677764 4444444444333 3458888886 54 333222 2322
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..+....+... .+....++...+.+++.....+...++.+|.+|++.
T Consensus 267 ~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~----- 313 (368)
T TIGR00903 267 IAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL----- 313 (368)
T ss_pred HHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh-----
Confidence 22222222211 112223334455666677777778899999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
|+++.++.+...++|+.++|.+.+.+.. +....|.+.++..+++.+..
T Consensus 314 -rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 314 -HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred -cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887763 55666766666655555544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=100.98 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
....+++..++..++.....+..+.|.+..+|.+ ...+.......+...++.++.++++||+ |||+++.++.++..++
T Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALG 303 (428)
T ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHH
Confidence 4666777778888888777778888888888877 4456666778888999999999999997 9999999999999998
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~ 228 (549)
.+++.+... .+...+++...+.|++.+.......++++|..+.++-+. +...+
T Consensus 304 ~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g 357 (428)
T PF13347_consen 304 FLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG 357 (428)
T ss_pred HHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence 888777621 366788888889999999999999999999998654221 12247
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw 258 (549)
..++.+.+...+|.++++.+.+.+.+..|+
T Consensus 358 ~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 358 MYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 778889999999999999999887654443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.2e-07 Score=94.97 Aligned_cols=160 Identities=14% Similarity=0.048 Sum_probs=114.9
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh--cc--hhHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q 008902 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~--~G--R~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~ 166 (549)
....|+++++|+++++.....+...+- ...-++.|.++|.+ +| ||+-++++.++..++.+.+++... .
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---~---- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---S---- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---c----
Confidence 345688999999999877655544443 34567789999986 45 455556677666555555554311 0
Q ss_pred CCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 008902 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 246 (549)
..+.....+..++..+|......+..+...|....+... |+...++.+....+|+.++.
T Consensus 83 -----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~ 141 (433)
T PF03092_consen 83 -----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGS 141 (433)
T ss_pred -----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHH
Confidence 023344455667788899888899999999998665422 78888899999999999999
Q ss_pred HHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 247 ~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
.+.|.+.+..+++..|.+.++...+..+..+..
T Consensus 142 ~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 142 LLSGPLLDSFGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred HhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence 999999999999999988877666665544443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-07 Score=103.53 Aligned_cols=130 Identities=14% Similarity=0.049 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHH
Q 008902 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (549)
Q Consensus 113 ~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (549)
...+...++.+++++++||+ |||+++.++.++..++.+++.+... ......++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~~ 415 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV--------------------------DLYFLRTA 415 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------------CchHHHHH
Confidence 34456677888999999997 9999999988877777666554311 11123333
Q ss_pred HHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q 008902 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (549)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~ 272 (549)
..++.+++.+...+....+.+|.+|++. |++++++.+....+|+.++|.+.+ + +..++...+++.++..+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHH
Confidence 4445566666667788899999999988 999999999999999999999988 4 3445666666666555555
Q ss_pred HHHHH
Q 008902 273 NMLFF 277 (549)
Q Consensus 273 ~i~~~ 277 (549)
.++.+
T Consensus 488 ~~~~~ 492 (505)
T TIGR00898 488 GILTL 492 (505)
T ss_pred HHHHH
Confidence 44443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.1e-07 Score=90.78 Aligned_cols=86 Identities=10% Similarity=0.064 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh---------
Q 008902 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------- 255 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~--------- 255 (549)
.++..++++.+++|.|.+...+..++++++..++++ +.+.+++.+.+..+|..++|++++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 578899999999999999999999999999999887 88899999999999999999999987632
Q ss_pred -------hchhHHHHHHHHHHHHHHHHH
Q 008902 256 -------HGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 256 -------~gw~~~f~i~~~~~~~~~i~~ 276 (549)
..|+++|++.++...+..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888886555544444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=113.70 Aligned_cols=183 Identities=5% Similarity=-0.177 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++...+..++..+.++++.+++|.|+++.+|.+...++.+.+.+.++..++.++.|+++|+. ++++.+.++.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 355555555666666777888999999999999999999999999999999999999999886 6666655555555444
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+.... ...+..+.+. ..+-. ...+.+.++++.++.|++.+...+...+++.+.+|++. |++
T Consensus 305 ~~~l~~~~~~-~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~ 370 (1140)
T PRK06814 305 GLDLAFASSS-VPAEPAQLKS------ILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR 370 (1140)
T ss_pred HHHHHhcccc-cccccccccc------hhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence 4333321000 0000000000 00000 00234556677788899999988899999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAI 267 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~-~~gw~~~f~i~~~ 267 (549)
.++.++...++|..+++++.+.+.+ ..++...|++.++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999999999988874 3456666554443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-06 Score=84.76 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=106.1
Q ss_pred HhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcccccc
Q 008902 95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174 (549)
Q Consensus 95 yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (549)
.+.++.|++..+.+.+.....+.+.+..++.|.++||+ |||+..++..+++.+..+....
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~------------------- 118 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS------------------- 118 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc-------------------
Confidence 34468999999999888888888999999999999997 9999999999988876643322
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC-chhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 008902 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS-KDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~-~~~~~~r~~~~~~~~-~~~~lg~~i~~~i~~~l 252 (549)
.++..++++|++.|++......+..+.+.....++. +++ ..+.-|+... +...+-++++..++-++
T Consensus 119 ----------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l 186 (354)
T PF05631_consen 119 ----------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVL 186 (354)
T ss_pred ----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 478899999999999999988888776543332222 211 1333333222 22223344444455555
Q ss_pred hhhhch--hHHHHHHHHHHHHHHHHHHhcc
Q 008902 253 QMEHGW--GSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 253 ~~~~gw--~~~f~i~~~~~~~~~i~~~~~~ 280 (549)
.+..+. ..+|..+..+.+++.++.....
T Consensus 187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred HHHhCCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 565554 7788888877777776655443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.9e-08 Score=99.39 Aligned_cols=142 Identities=20% Similarity=0.248 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC-hhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 008902 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 73 ~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s-~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~ 151 (549)
..+...++..+.++....+++.|+.+.+|++ ..+.+...+...+...++.++.|+++||+ |+++...+......++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 288 (352)
T PF07690_consen 210 ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGAL 288 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence 3444444555667778889999999999999 78888889999999999999999999997 988888877777777666
Q ss_pred HHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 008902 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
.+.+... ..+....++..++.|++.+...+...++..|.+|++. |++..
T Consensus 289 ~~~~~~~-------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 337 (352)
T PF07690_consen 289 GLLLLPF-------------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAF 337 (352)
T ss_dssp HHCCSHH-------------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHH
T ss_pred HHHHHHH-------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence 6655422 0244566667788999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHH
Q 008902 232 NFFYLSVTVGAIVAF 246 (549)
Q Consensus 232 ~~~~~~~~lg~~i~~ 246 (549)
++++...++|+.++|
T Consensus 338 g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 338 GLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=96.80 Aligned_cols=145 Identities=10% Similarity=0.023 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHH-HHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~-~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
.++.+.+..++..++++.+.++++.|+++ +|++..+.+.+..... +...++.+++|+++||+ |||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 35556666667788888899999999987 9999999887777655 56788999999999997 999998888877776
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+..++.+.... .+.. .. ...+...+..+.++.+++.+...+...+++.|.+|++. |+
T Consensus 288 ~~~~~~~~~~~--~~~~-------------~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 344 (356)
T TIGR00901 288 TNAGFVWLASN--GHHD-------------GI--TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA 344 (356)
T ss_pred HHHHHHHHHhc--Cccc-------------cc--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence 65544432110 0000 00 00133455666778899999999999999999999999 99
Q ss_pred hHHHHHHHHHH
Q 008902 229 RFFNFFYLSVT 239 (549)
Q Consensus 229 ~~~~~~~~~~~ 239 (549)
+.+++++...+
T Consensus 345 ~~~g~~~~~~~ 355 (356)
T TIGR00901 345 TQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHh
Confidence 99998776554
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.5e-07 Score=89.04 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
..|.+.+..-.+++.+|.+..|+|.++. +.|+|..+++..++...+......+++-++++|.--+|+......+.+.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 4566777777789999999999999985 689999999999999999999999999999998767888888888889999
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+.+. | .+...+. .+++|+|.|+..+....++.+..++.+ + -++
T Consensus 288 ~~G~~~~-------P--------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~ 333 (395)
T COG2807 288 LVGLLLA-------P--------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA--I---AAA 333 (395)
T ss_pred HHHHHHh-------h--------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH--H---HHH
Confidence 8888765 1 1222222 478999999999999999999887643 1 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN 273 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~ 273 (549)
..++.+-...+-++++|++.|++.|..| |...+...+.+.++..
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~ 378 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML 378 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence 5566677777788899999999999775 8877665554443333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.9e-07 Score=96.43 Aligned_cols=165 Identities=12% Similarity=-0.008 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
|.++.+++..++..+..+......+.|++..++ +....+.+.....+...++.++.++++||+ |||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 456667777777777776666665545544444 444555555556678888899999999997 999999988887776
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHL 227 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r 227 (549)
+.+.+.+.... ++ .+...+++..++.+++.+...+...++++|..|.++-+. +...
T Consensus 309 ~~~~~~~~~~~----~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 309 SCGVLLLMGLA----AP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred HHHHHHHHhcc----Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence 66554432110 10 244556666677889999888999999999977542110 1113
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw 258 (549)
+..+++..+...+|.++++.+.|++.+..|+
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5577888889999999999999988765444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-06 Score=91.15 Aligned_cols=145 Identities=10% Similarity=-0.087 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~ 153 (549)
..+..++...+.+....+.+.|+.+.+|++..+.+.......++..++.+++|+++||+ |||+++.++.++..+..+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~ 277 (377)
T PRK11102 199 YMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWL 277 (377)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556666677788888999999999999999999999999999999997 99999988887655433332
Q ss_pred HhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 008902 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (549)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~ 233 (549)
...... + .+...+.++..+.+.+.+...+.......|..| +. +++..+.
T Consensus 278 ~~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~ 326 (377)
T PRK11102 278 VVSALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSL 326 (377)
T ss_pred HHHHHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHH
Confidence 222100 0 123333344444444445555555566667766 44 6777777
Q ss_pred HHH-HHHHHHHHHHHHHH
Q 008902 234 FYL-SVTVGAIVAFTLVV 250 (549)
Q Consensus 234 ~~~-~~~lg~~i~~~i~~ 250 (549)
+.. ...+|+.+++.+.+
T Consensus 327 ~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 327 AGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 544 34466666665543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.1e-07 Score=93.09 Aligned_cols=159 Identities=6% Similarity=-0.068 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccc
Q 008902 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (549)
Q Consensus 83 ~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~ 162 (549)
.....+...++.|+++.+|.+..+.+.......++..++.++.+++.||. ++++++.++.++ .+..+.+...
T Consensus 219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~------ 290 (393)
T PRK11195 219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ------ 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH------
Confidence 34445555667888889999999999999999999999999999999986 888888776432 2222222221
Q ss_pred cCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH
Q 008902 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (549)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 242 (549)
.+.....+..++.|++.+...+...+.+.+..|++. ++++.++..+...++|.
T Consensus 291 ----------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~ 343 (393)
T PRK11195 291 ----------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAM 343 (393)
T ss_pred ----------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHH
Confidence 244455566677888888877777787777544321 16888999999999999
Q ss_pred HHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 243 ~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
.++..+.+.+ +..|-+..+.+.+++..+.+.+.+
T Consensus 344 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 344 LLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999888855 567766666665555555544443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=102.14 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcc--hhHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~G--R~~~i~i~~~~~ 146 (549)
+.++...+...+..++++.-...++.|.. ..+++..+++.++++..+...++.++.|+++|+. . ++.+..++.++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 46778888888888999888889999987 8999999999999999999999999999999986 5 333444444444
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.+....+.+. .++..++..-.+.|+..|......+..+.|..+.+.
T Consensus 376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------ 421 (509)
T KOG2504|consen 376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------ 421 (509)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence 4444333333 456677777788999999988888889999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHhcc
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~~~ 280 (549)
...++++......++..++|.+++++.+..+ |...|+.+.++.+++.+.++..+
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 8999999999999999999999999998887 99999999988888887665543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.9e-07 Score=94.26 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhHhcCCChhHH-HHHHHHH----HHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008902 87 GLSVNMVTFMFYVMHKSFADS-SNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 161 (549)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a-~~~~~~~----~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~ 161 (549)
....+...+.....+.+.... +...... .+...+..++-|.++||+ |||..+.+..+...+..+.+.+.
T Consensus 39 ~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~----- 112 (463)
T KOG2816|consen 39 TVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ----- 112 (463)
T ss_pred cchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH-----
Confidence 444666667666665544332 2333333 567788889999999997 99999999998888777666653
Q ss_pred ccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHH--hhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHH
Q 008902 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (549)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~ 239 (549)
. +++++ +.++ +.+.......++++|...+++ |...+++.+....
T Consensus 113 ------------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~ 158 (463)
T KOG2816|consen 113 ------------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFG 158 (463)
T ss_pred ------------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHH
Confidence 2 22222 3332 334456777788999999887 9999999999999
Q ss_pred HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcccc
Q 008902 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 240 lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~ 282 (549)
.+..++|.+++++.+..|....|.+.++..++..+...+..|+
T Consensus 159 ~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 159 AGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred HHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999988888877766655444
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-06 Score=86.41 Aligned_cols=128 Identities=13% Similarity=0.016 Sum_probs=82.7
Q ss_pred HHHHHHHhhHhcCC---ChhH----HHHHHHHHHHHHHHHHhHHHHHhhhhcc-hhHHHHHHHHHHHHHHHHHHhhhhhc
Q 008902 89 SVNMVTFMFYVMHK---SFAD----SSNAVNNFLGISQASSVLGGFLADAYLG-RYWTIAIFTTIYLAGLTGITLCATMK 160 (549)
Q Consensus 89 ~~~l~~yl~~~l~~---s~~~----a~~~~~~~~~~~~~~~l~~G~laDr~~G-R~~~i~i~~~~~~ig~~~~~~~~~~~ 160 (549)
.+..|.|+++..+- +..+ .+...++..+...+..|+-|-++|.. | ||+.+.+...+-++++..++...
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~--- 110 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP--- 110 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC---
Confidence 34568888887655 4333 34556667777788888899999976 7 55566666666666666666651
Q ss_pred cccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 008902 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (549)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~l 240 (549)
+ +.++...++...+..++..+......+++.|..++++-+ |.+..+| -...+
T Consensus 111 ----~------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~----riS~lg~--~~gyl 162 (438)
T COG2270 111 ----P------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG----RISGLGW--ALGYL 162 (438)
T ss_pred ----C------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC----ccccccc--ccccc
Confidence 1 123444445556677888888888999999999887733 5544443 34445
Q ss_pred HHHHHHHH
Q 008902 241 GAIVAFTL 248 (549)
Q Consensus 241 g~~i~~~i 248 (549)
|+.+..++
T Consensus 163 gs~i~li~ 170 (438)
T COG2270 163 GSVILLIF 170 (438)
T ss_pred cchHHHHH
Confidence 55544443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-06 Score=89.92 Aligned_cols=149 Identities=11% Similarity=-0.011 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhc
Q 008902 81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160 (549)
Q Consensus 81 ~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~ 160 (549)
....++....+++.|++ +.|++..+.+........+..++.++++++.||+ |||+++....++..++.+.+.+....
T Consensus 215 ~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 291 (401)
T PRK11043 215 CSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL- 291 (401)
T ss_pred HHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 33455566667787775 5799998888877777788888999999999997 99998766665555544433322110
Q ss_pred cccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHH
Q 008902 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (549)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~l 240 (549)
.+ .+...++++..+.+++.+...+.......|..|+ + +++..++++.....
T Consensus 292 --~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~ 342 (401)
T PRK11043 292 --SH--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLG 342 (401)
T ss_pred --cc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHH
Confidence 00 1334444555677888888888877777777763 5 88899998887777
Q ss_pred HHHHHHHHHHHHhhhhchhHH
Q 008902 241 GAIVAFTLVVYIQMEHGWGSA 261 (549)
Q Consensus 241 g~~i~~~i~~~l~~~~gw~~~ 261 (549)
++.+++.+.+.+.+.......
T Consensus 343 ~~~~~~~~~g~l~~~~~~~~~ 363 (401)
T PRK11043 343 LCFLASLLVSALISTPLLTTG 363 (401)
T ss_pred HHHHHHHHHHHccCCChhHHH
Confidence 888888888888765444433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-06 Score=89.97 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q 008902 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~ 156 (549)
....+.+.|+.+++|++..+.+.......++..++.++.|+++||+ |||+.+.++.++..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788889999999888888888889999999999999997 99999999988888777766654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-06 Score=93.50 Aligned_cols=160 Identities=12% Similarity=0.047 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
.+.++...++...+........+.|.+..++ +....+.......+...++.+++++++||+ |||+.+.++.++..++.
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 231 WRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333333343 233333444555677778889999999997 99999988876665443
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhhhh
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDR 229 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~~ 229 (549)
..+.+. ++ .+...+++..++.|++.+...+...++++|..+.++.+. +...+.
T Consensus 309 ~~~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~ 362 (444)
T PRK09669 309 ALIFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGL 362 (444)
T ss_pred HHHHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchH
Confidence 333222 10 355566777788999999999999999999997543221 111356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw 258 (549)
.++.+.++..+|.++++.+++++.+..|+
T Consensus 363 ~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 363 VFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77888889999999999999988776655
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-09 Score=115.37 Aligned_cols=202 Identities=13% Similarity=0.094 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 008902 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (549)
Q Consensus 74 i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~ 153 (549)
+.+..+.+ +..++......+-+.+.|+++.++++.+.+.+-++..+..++..+..+|. -|-|.+.++.++..+|.+++
T Consensus 8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHH
Confidence 34444445 66667777777788999999999999999999999999999999999985 78888999999999999988
Q ss_pred Hhhhhhc-cccCC------------CCCc--c---ccccccCCC---CCcchh-hHHHHHHHHHHHHHhhcccchhhhhh
Q 008902 154 TLCATMK-VFMPN------------QDNC--D---RISQLLGSC---EPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSF 211 (549)
Q Consensus 154 ~~~~~~~-~~~~~------------~~~~--~---~~~~~~~~~---~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~ 211 (549)
++.-++. ...+. .+.| . +...+...| +..... -...++++.++.|+|....++...+|
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 8743221 11000 0111 0 000000011 111212 24677788999999999999999999
Q ss_pred hhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---------------------hh-chhHHHHHHHHHH
Q 008902 212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------------------EH-GWGSAFGALAIAM 269 (549)
Q Consensus 212 ~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~---------------------~~-gw~~~f~i~~~~~ 269 (549)
+=|..+++. -...+++++....+|.++|.++++.... .. .|+.+|.+.++..
T Consensus 166 iDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 166 IDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999888877 6788889999999999999888875531 02 3888998888777
Q ss_pred HHHHHHHHhccccc
Q 008902 270 GISNMLFFIGTPLY 283 (549)
Q Consensus 270 ~~~~i~~~~~~~~~ 283 (549)
++..+.++...|+.
T Consensus 240 ~l~aipl~~FPk~l 253 (539)
T PF03137_consen 240 FLSAIPLFFFPKKL 253 (539)
T ss_dssp --------------
T ss_pred HHHHHHHHcCCccC
Confidence 76666665554443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=92.56 Aligned_cols=164 Identities=9% Similarity=-0.054 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHh-cCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~-l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.+...+..++......++.++++.|+.+. .+.+...++...+.+.....++.+++|+++||+ ++|+++.++.++..+.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 33344455555555556778889998653 255555566667777788899999999999997 9999988887777766
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.++.... .+. ....+..+.|++.+.++|.+.+...+..+++. ...
T Consensus 313 ~ll~~~~----------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~ 357 (410)
T TIGR00885 313 CLGSIFA----------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYG 357 (410)
T ss_pred HHHHHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhh
Confidence 6655543 111 22456667888888889999999999998654 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh------chhHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMGIS 272 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~------gw~~~f~i~~~~~~~~ 272 (549)
.. ....+ .+|+.+.|.+.|++.|.. +.+..|.++..+.+..
T Consensus 358 s~-~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 358 AA-GLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HH-HHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 22 22223 399999999999999954 4788888877665443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5e-06 Score=91.39 Aligned_cols=207 Identities=14% Similarity=0.100 Sum_probs=148.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 69 IAALFIF-GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~i~-~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
+.++.++ +..+...+.. +......+-+.+.++++..+.+.+.+.+-++..+...+..+.+-|. -|-|.+-++.+++.
T Consensus 96 k~fl~~l~~~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG 173 (735)
T ss_pred chHHHHHHHHHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence 3444444 4444444444 7777778888899999999999999999999999999999999986 78889999999999
Q ss_pred HHHHHHHhhhhhc--cc-----------cC----CCCCcccccc----ccCCCC--Ccchh-hHHHHHHHHHHHHHhhcc
Q 008902 148 AGLTGITLCATMK--VF-----------MP----NQDNCDRISQ----LLGSCE--PAKSW-QMLYLYTVLYITGFGAAG 203 (549)
Q Consensus 148 ig~~~~~~~~~~~--~~-----------~~----~~~~~~~~~~----~~~~~~--~~~~~-~~~~~~~~~~l~g~g~g~ 203 (549)
+|.+++++.-+.. .. .+ .++.|+...+ ++..|. ..++. -+.+++++.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 9999988742110 00 00 0000110000 112232 12222 234677889999999999
Q ss_pred cchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------------------hh-chhHHHHH
Q 008902 204 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------------EH-GWGSAFGA 264 (549)
Q Consensus 204 ~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~------------------~~-gw~~~f~i 264 (549)
+.+...+++=|-..+++ -...+++.+....+|+++|.++++++.. .. .|+.+|++
T Consensus 254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 99999999988877766 6788899999999999999999987642 12 39999999
Q ss_pred HHHHHHHHHHHHHhccccc
Q 008902 265 LAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 265 ~~~~~~~~~i~~~~~~~~~ 283 (549)
++.+.++..+.+++..+..
T Consensus 328 ~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHHHHHHHhCcccC
Confidence 9988888888777755444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.54 E-value=7e-07 Score=92.38 Aligned_cols=139 Identities=11% Similarity=0.003 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
.+.+.+..++.....+++..+++.|+++.+|++..+++.......+...++.+++|+++||+ |||+.+..+..+..++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence 34444455555556677888899999999999999999888888889999999999999997 99988877776666665
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
.++.+... + ..+...+++..++.+++.|...+...+..++.+| ++ +++.
T Consensus 306 ~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~ 354 (366)
T TIGR00886 306 FLVVLGLV-----S-------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAV 354 (366)
T ss_pred HHHHhcCC-----C-------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccH
Confidence 55544311 0 0134444555556666666666777788888887 34 8888
Q ss_pred HHHHHHHHHHH
Q 008902 231 FNFFYLSVTVG 241 (549)
Q Consensus 231 ~~~~~~~~~lg 241 (549)
.++.+...++|
T Consensus 355 ~g~~~~~~~~g 365 (366)
T TIGR00886 355 SGLVGAIGNLG 365 (366)
T ss_pred HHHHHHhccCC
Confidence 88877766665
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-05 Score=81.27 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=113.9
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHH
Q 008902 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 61 ~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~ 140 (549)
.+..++||-.++...+..+.+.+.. .-......|.++.+| +...+.+...+|+..+....+.+-|+.|++ |-|.+.+
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qW-I~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~l 113 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQW-IQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALL 113 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchh-eeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHH
Confidence 3556777865555555555554433 222334567777788 555566778889999999999999999997 9999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 008902 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (549)
Q Consensus 141 i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (549)
++..+..+|..+=.++.. |...+. .-....+.+..+.+..+-.+...-+-+-+-+|++++
T Consensus 114 lgt~ln~iGa~Ir~iss~-p~v~~~-------------------f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q 173 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSL-PFVPPL-------------------FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ 173 (480)
T ss_pred HHHHHHHHHHHHhhhccC-cccccc-------------------chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch
Confidence 999999999887666532 222221 111355667777777776665555566678899888
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008902 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (549)
|.++...-.++..+|.+++.++...+..
T Consensus 174 ------ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 174 ------RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred ------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 9988888777777777777666655543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-05 Score=83.75 Aligned_cols=177 Identities=9% Similarity=0.025 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~ 151 (549)
+..++..++.....-....+...|+++.-+.+....+...+...+.-.+.-.+.+++-.|+ |-++++.++.+.+++=..
T Consensus 210 ~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~ 288 (400)
T PF03825_consen 210 LVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWL 288 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 3344444555555555667788898766557777777666666677777778889999997 999999999998887666
Q ss_pred HHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 008902 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
+.+.... | ..........+..+.|+..+....+...++.+..|++. |.++.
T Consensus 289 l~a~~~~-----~------------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q 339 (400)
T PF03825_consen 289 LYAYFSD-----P------------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQ 339 (400)
T ss_pred HHHHhcC-----C------------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHH
Confidence 6555411 0 00111223334456899999999999999999999998 99999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhhhchh------HHHHHHHHHHHHHHHHHHh
Q 008902 232 NFFYL-SVTVGAIVAFTLVVYIQMEHGWG------SAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 232 ~~~~~-~~~lg~~i~~~i~~~l~~~~gw~------~~f~i~~~~~~~~~i~~~~ 278 (549)
+++.. ...+|..+|..++|++.+++|-+ ..+.++++..++..+++.+
T Consensus 340 ~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 340 GLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99876 56799999999999999887644 3444555555555555444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.2e-06 Score=89.03 Aligned_cols=186 Identities=11% Similarity=0.084 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhH----HHHHHHHHHHHHHHHHhHHH----HHhhhhcchhHHH-
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGG----FLADAYLGRYWTI- 139 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~----a~~~~~~~~~~~~~~~l~~G----~laDr~~GR~~~i- 139 (549)
+.+..+++..++....+....+.++.|..+..+.+... .+...+.-.+...+..++-. ++.||-.+.+...
T Consensus 272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k 351 (475)
T TIGR00924 272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLK 351 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 34555555555666777677777888887765543221 34444444444444444433 4555422333333
Q ss_pred -HHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 008902 140 -AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 140 -~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
.++.++..++.+.+++..... . .+...+.+++++..++.++|.....|...++.++..|+
T Consensus 352 ~~~G~~l~~~~~~~~~~~~~~~---~----------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~ 412 (475)
T TIGR00924 352 FTLGMLFCGASFLTFAASIWFA---D----------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ 412 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc---C----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 677887777777766532110 0 00114778888999999999999999999999999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
+. |++.+++++.+..+|..+++.+.....+..+|...|...++..++..++++..
T Consensus 413 ~~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 413 RL------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 88 99999999999999999999888877776678877777666665555555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=83.26 Aligned_cols=142 Identities=11% Similarity=-0.059 Sum_probs=96.8
Q ss_pred HHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q 008902 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~ 167 (549)
.....+.|+++.+|.+..+.+........+..++.++.+++.||+ ||+.. .+.....++.+.+...... ..
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~----~~-- 296 (394)
T PRK11652 226 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMW--QSVICCLLAGLLMWIPGWF----GV-- 296 (394)
T ss_pred HHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHh----cc--
Confidence 344567788888999998888887777778888888888888886 63332 2222222232222211100 00
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 008902 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~ 247 (549)
.+...++++..+.++|.+...+...+...|.+|+ + +++..++.+...++|+.+++.
T Consensus 297 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~ 352 (394)
T PRK11652 297 -----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAAL 352 (394)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHH
Confidence 2344556667788888888888999888888873 4 788888888888999999999
Q ss_pred HHHHHhhhhchhHHH
Q 008902 248 LVVYIQMEHGWGSAF 262 (549)
Q Consensus 248 i~~~l~~~~gw~~~f 262 (549)
+.+++.+...+....
T Consensus 353 ~~~~~~~~~~~~~~~ 367 (394)
T PRK11652 353 LSAMLPQTGQFSLGL 367 (394)
T ss_pred HHHHccCCchHHHHH
Confidence 998887665454433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=85.02 Aligned_cols=159 Identities=14% Similarity=0.040 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.....++..++...++....+..+.|.+..+|.+.............+..++.++...|++|+ |+|+++.++.++.+++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG 315 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 344555567777777766667778888888998888888888888888888899999999997 9999999999999999
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh-h
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL-D 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r-~ 228 (549)
.+++.+... .+..++++...+.++|.+...+...++++|..+-++-+.-+.| |
T Consensus 316 ~~~~~f~~~--------------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG 369 (467)
T COG2211 316 YLLLYFTPA--------------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG 369 (467)
T ss_pred HHHHHhhcC--------------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence 999888721 4677888888899999999999999999999876553322112 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQME 255 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~ 255 (549)
..++.+.+..=+|.+++..+.+++...
T Consensus 370 i~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 370 IVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666667777777777666443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-05 Score=85.98 Aligned_cols=159 Identities=10% Similarity=0.036 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~ 151 (549)
..++...++..++..........|.+..++.+ ...+.+...+.+...++.+++++++||+ |+|+++..+..+..+..+
T Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~ 308 (460)
T PRK11462 231 RIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISL 308 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 33444445555555444444444444445543 3334556667788888999999999997 998887655544433333
Q ss_pred HHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh-hhH
Q 008902 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL-DRF 230 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r-~~~ 230 (549)
++.+. +. .+...+++..++.|++.+...+...++++|..+.++-+..+.| +..
T Consensus 309 ~~~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~ 362 (460)
T PRK11462 309 AMFFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGIS 362 (460)
T ss_pred HHHHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHH
Confidence 33222 10 2233344445566777777667777888888775431111112 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~gw 258 (549)
++.+.++..+|.++++.+++++.+..||
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5666678889999998888877654443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-05 Score=76.66 Aligned_cols=181 Identities=10% Similarity=0.065 Sum_probs=114.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
||..+.....++.+.. ..|....+ ...+++.+|+|.++.+.+...-.++.+++ ++.|.+.|++ |.+.++.++.+..
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~y-S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAY-SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG 76 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhh-hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence 4555454555554433 44455544 56788999999999999988888888875 8889999987 9999999999999
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.+|+.++.+...... .....+.+.+..++.+.+.+...........+.||+ +
T Consensus 77 ~~GY~~~~l~~~~~i---------------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------ 128 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRI---------------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------ 128 (250)
T ss_pred HHHHHHHHHHHhCcc---------------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence 999999888743110 002344555555555555554444444445588884 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
||+..++.--...+++.+-..+...+.+.-.-...+.+.....+++++...+.
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v 181 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV 181 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence 88888886555555555443333333222223334444444455555444443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.1e-05 Score=79.88 Aligned_cols=174 Identities=9% Similarity=0.073 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCC---ChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~---s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
.+|...+........|+..-...+.|.+..+.- +....+.+.+.-...-++.-.+..++-+|+ |-|+.++++.++.
T Consensus 221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~ 299 (412)
T PF01306_consen 221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHH
Confidence 566555555555455555555678888776643 223345566666677777788889999997 9999999999988
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
++=.++++++ ++.+.+.+...+-++-.+.......-++++.+|++-
T Consensus 300 ~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------ 345 (412)
T PF01306_consen 300 AIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------ 345 (412)
T ss_dssp HHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------
T ss_pred HHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------
Confidence 8877777765 467788888899999999888999999999999877
Q ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~-~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
..+.+.+ ++++..+|..+.+.++|++.|+.|++..|++.+++.++..++-.+
T Consensus 346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence 6777777 567889999999999999999999999998777665555544433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.4e-05 Score=73.94 Aligned_cols=145 Identities=21% Similarity=0.254 Sum_probs=105.1
Q ss_pred HHHHHhhHhcCCCh--hHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCC
Q 008902 91 NMVTFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (549)
Q Consensus 91 ~l~~yl~~~l~~s~--~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~ 168 (549)
..+.+ ...++.+. ...+...+.+.....++.++.|.++||+ |||+.+..+.....++.++..+...
T Consensus 24 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------- 91 (338)
T COG0477 24 ALPLL-LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------- 91 (338)
T ss_pred HHHHH-HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc----------
Confidence 33433 34444444 4678888888889999999999999998 9998888887765555444444310
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhhhHHHHHHH-HHHHHHHHHH
Q 008902 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAF 246 (549)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~~~~~~~~-~~~lg~~i~~ 246 (549)
.....+++.|++.|++.+...+...+++.|.++. +. |+...+.... ...+|..+++
T Consensus 92 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 149 (338)
T COG0477 92 ----------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGP 149 (338)
T ss_pred ----------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 2467788888889999999999999999999987 33 8888888777 5778888888
Q ss_pred HHHHHHhhh--hchhHHHHHHHHHH
Q 008902 247 TLVVYIQME--HGWGSAFGALAIAM 269 (549)
Q Consensus 247 ~i~~~l~~~--~gw~~~f~i~~~~~ 269 (549)
.+.+.+... .+|++.|.+.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 150 LLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHH
Confidence 777666543 57888555544433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.1e-05 Score=77.05 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008902 82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 161 (549)
Q Consensus 82 ~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~ 161 (549)
.++++.==..+=+|--+.||++..+.+.+...+.++..++-.+.|++..|-.|++++..+++.+..++..++.++...
T Consensus 221 t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-- 298 (403)
T PF03209_consen 221 TLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-- 298 (403)
T ss_pred HHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 344433334566788889999999999999999999999999999988865699999999999888888777766431
Q ss_pred ccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 008902 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (549)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg 241 (549)
.+.+.+..+.+++|+|.|......-+.+-|+..+++ .+.+++.+..+..+.
T Consensus 299 -----------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A 349 (403)
T PF03209_consen 299 -----------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIA 349 (403)
T ss_pred -----------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHH
Confidence 356788899999999999988888888889998877 789999988888888
Q ss_pred HHHHHHHHHHHhhh----------hchhHHHHHHHHHHHHHHHHH
Q 008902 242 AIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 242 ~~i~~~i~~~l~~~----------~gw~~~f~i~~~~~~~~~i~~ 276 (549)
.+++..+++.+.|. .+|...|.+-++.+++++++.
T Consensus 350 ~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 350 RGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88888877766542 357777777777776666654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-05 Score=77.49 Aligned_cols=155 Identities=13% Similarity=0.067 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
.....+..|+.--.=..+.++++.|+.+..|++..+++...+.+..+..+|..++-++-.|+ -..|.+.+..++..+-.
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~ 316 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLL 316 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 44445555555555556778899999999999999999999999999999999999998887 77777776665444333
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
+...+. .+ ..-+.+.+++|+..+.+.|.+.+...+..+++.. .++.
T Consensus 317 ~~~~l~----------------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~ 362 (422)
T COG0738 317 LAVALI----------------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG 362 (422)
T ss_pred HHHHHh----------------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce
Confidence 333332 12 3344566789999999999999999999995442 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHH
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~ 263 (549)
.-....+|+++.|.+.|++.|..|-...+.
T Consensus 363 ---~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 363 ---LLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred ---eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 222345899999999999999998777766
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.3e-05 Score=82.07 Aligned_cols=175 Identities=7% Similarity=0.038 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhcCCChh----HHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHH-------HHHHHHHH
Q 008902 78 EMAERMAYFGLSVNMVTFMFYVMHKSFA----DSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-------IAIFTTIY 146 (549)
Q Consensus 78 ~~~~~~~~~~v~~~l~~yl~~~l~~s~~----~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~-------i~i~~~~~ 146 (549)
..+....+......++.|.++..+.+.. ....+.+...+...+..++.|++.||+ |||+. +.++.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 4444555656657778888753333211 123333334455556777788999997 98873 67777777
Q ss_pred HHHHHHHHhhhh-hccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 147 LAGLTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~ig~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.++.+.++.... .....+ ..+.++++...++.|+|.+...+....++.+..|++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~-------------------~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~----- 412 (489)
T PRK10207 357 SLGFLTAAAAGMWFADAQG-------------------LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL----- 412 (489)
T ss_pred HHHHHHHHHHHHhhcCCCC-------------------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH-----
Confidence 777655432210 000000 1345666677888999999999999999999999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------hhchhHHHHHHHHHHHHHHHHHHh
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~----------~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
++..++.++...++|..++..++.+... ...+.+.|...++..++..++++.
T Consensus 413 -~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 413 -MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998877765521 112445565555544444444443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00016 Score=76.56 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.++...+..++....++.....+|.|+++.+|.+..+.+.......++..++..+.+.+.++. ++++.+.....+..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 455555555666677777777889999999999999998887777777777777777665444 4444444334444445
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+++.+.... .+ .+...++++.++.++|.+...++.....- .+.+.+ +++
T Consensus 298 ~~l~~~~~~~---~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~ 347 (413)
T PRK15403 298 LALLIVGNLL---WP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT 347 (413)
T ss_pred HHHHHHHHHH---cc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence 4444332110 01 23333556777788888887777775332 222221 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~ 271 (549)
..+.+......+..+++...+++.++ +-.+.|.+..++..+
T Consensus 348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 66677777777778888888887655 445566554444333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00011 Score=79.84 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHhhH--hcCCCh------hHHHHHHHHHHHHHHHHHhHH----HHHhhhhcchhHHHHHHHHHH
Q 008902 79 MAERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 79 ~~~~~~~~~v~~~l~~yl~~--~l~~s~------~~a~~~~~~~~~~~~~~~l~~----G~laDr~~GR~~~i~i~~~~~ 146 (549)
+.....+|.+...++.++.. ..+.+. ...++..+...+...+..++. +++.||+ +..+.+.++.++.
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~ 360 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLC 360 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHH
Confidence 34456666676666666553 111111 113334444444444554555 5556664 6667888889988
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+.+.+....+. .|. ..+..++....++.++|.+...|...+++.+..|++.
T Consensus 361 ~l~f~~l~~~~~~~~----------------~~~---~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------ 415 (500)
T PRK09584 361 SGAFLVLPLGAKFAN----------------DAG---IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------ 415 (500)
T ss_pred HHHHHHHHHHHHhcC----------------CCC---ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------
Confidence 888888766532100 000 1345577888899999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh----------hhchhHHHHHHHHHHHHHHHHHHh
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~----------~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
|++.++.++++..+|+.++..+...... ..++...|...++..++..++++.
T Consensus 416 rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 416 MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888777666653321 123566676655554433333333
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00055 Score=76.32 Aligned_cols=317 Identities=11% Similarity=-0.040 Sum_probs=199.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCC
Q 008902 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (549)
Q Consensus 100 l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (549)
.+...........++.....+.++.....+|-.-|+...+....+.++++.+...+... +.. +
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a~-~--------------- 77 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GAI-P--------------- 77 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccC-c---------------
Confidence 44444566778889999999999999999998877888888888888887777766643 111 0
Q ss_pred CCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-h
Q 008902 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-W 258 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w 258 (549)
...+.....+..+.+.++.++..++-+.+.+++++.-+ ...+.+..++|++..+.+.+. .+++..+..... +
T Consensus 78 ---~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~ 150 (654)
T TIGR00926 78 ---SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGD 150 (654)
T ss_pred ---ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 11233445567777889999999999999999998765 244567999999999887765 455555554443 3
Q ss_pred hH------HHH-HHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhhhcccCccccccccccCCCcccccC
Q 008902 259 GS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG 331 (549)
Q Consensus 259 ~~------~f~-i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~ 331 (549)
.. .|. ..++++++.++.++.....++..++.+.+-..+.++...+.+..+. ++
T Consensus 151 ~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~------~~-------------- 210 (654)
T TIGR00926 151 VGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK------RF-------------- 210 (654)
T ss_pred hcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH------hh--------------
Confidence 21 233 4555666666667776655555555444333333333222221110 00
Q ss_pred CcccccCCcchHhhhhhhhcccccCCCCCCccc--cchhHHHHHHhhhhchhhhHHHHHHHHHhhhhhHHHHHHHhcccC
Q 008902 332 SGKIAHTDDFRCLDKAALELKEDVINPSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409 (549)
Q Consensus 332 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~--~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~ 409 (549)
.+. .. .....|... ....+++++...+++.++...+.+++.+.++......+..++++.
T Consensus 211 ----~~~-------------~~--~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m 271 (654)
T TIGR00926 211 ----STR-------------SE--HWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRM 271 (654)
T ss_pred ----ccC-------------Cc--ccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Confidence 000 00 000112111 222335678888899998889999999988877888887888776
Q ss_pred CCCcccCCCccCchhHHHHHHHHHhhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008902 410 MGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGLLEFLYEE 482 (549)
Q Consensus 410 ~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~~~l~rr~~~~~~~~~~l~~i~~G~~l~~~~~~~~~~~~~~~~~ 482 (549)
.+.+...+...+.++.+-.++..++...+..++.++..+ .-..+.++.-+.+.++++++..+..+.+-..
T Consensus 272 ~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~---~~~~ls~l~k~~iG~~la~la~~va~~ve~~ 341 (654)
T TIGR00926 272 DGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAK---CGTRFTSLRKMAVGGLLAALSFFVAALVQLK 341 (654)
T ss_pred cCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHh---cCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434444566777777777777777766677777532 2234555666666666666554555544444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=85.42 Aligned_cols=162 Identities=12% Similarity=0.105 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh---cchhHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY 146 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GR~~~i~i~~~~~ 146 (549)
.+|..++..++.....|++..++|.|+++..|++..++.+....+.++..++.++.|+++||. +.+|..+..++.++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 578888999999999999999999999997779999999999999999999999999999993 36666666665555
Q ss_pred HH-HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 147 LA-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 147 ~i-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
.+ |.+.+... .+......+.+....+.+...++......+......
T Consensus 354 ~~~g~~~l~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----- 400 (495)
T KOG2533|consen 354 AIIGAISLLAA----------------------------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----- 400 (495)
T ss_pred HHHHHHHHHhh----------------------------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence 44 32333322 111222222222333333334444444555554332
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH-HHHHHhhhhchhHHHHH
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFT-LVVYIQMEHGWGSAFGA 264 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~-i~~~l~~~~gw~~~f~i 264 (549)
+|-+..+.+..+.+.+++++|. ..+.....++|...|..
T Consensus 401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 2555555555555555444443 33444455678888843
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.7e-06 Score=83.50 Aligned_cols=170 Identities=12% Similarity=0.019 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008902 82 RMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKV 161 (549)
Q Consensus 82 ~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~ 161 (549)
++..-..-..++.++.+.+..+.-+.+....-..+...++..+.|.++||+ +.-+.+....-+.++|......-
T Consensus 283 n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP----- 356 (464)
T KOG3764|consen 283 NSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIP----- 356 (464)
T ss_pred cchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhH-----
Confidence 344434556678888888886555778777778888999999999999998 83333332222333332222211
Q ss_pred ccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHH
Q 008902 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (549)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg 241 (549)
.| .++..+++-+...+++.+...+...+..+.+.+.++..+-..-++.+++...+..+|
T Consensus 357 ------~~---------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla 415 (464)
T KOG3764|consen 357 ------FA---------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLA 415 (464)
T ss_pred ------hh---------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHh
Confidence 12 466677777778888888877777777777777654321113678888889999999
Q ss_pred HHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 242 ~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
..+||.++|.+.+..|++|.-.+.++...+..-++.+
T Consensus 416 ~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 416 YAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred hhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877666665555444444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.00 E-value=4e-08 Score=105.09 Aligned_cols=187 Identities=14% Similarity=0.077 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
.....+....+..+..+....+...++.+..+.+.. ........+...++.+++.++.||+ |||++++++.++..+.
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 444445555555444444444445566666776666 2222233455566777888999997 9999999998887777
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+.+..... . ..+ .++..+...+............+..+....+.+|.||++. |.+
T Consensus 330 ~~~~~~~~~-~--~~~---------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~ 385 (451)
T PF00083_consen 330 SLILGIIFF-L--GVS---------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RST 385 (451)
T ss_pred ccccccccc-c--ccc---------------cccccccccceeeeeccccccccccccccccccccccccc------ccc
Confidence 666541000 0 000 0000111111111111112222334556678899999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccccc
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 283 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~ 283 (549)
+.++.+....+++++++.+..++.+..+-...|.+.+++..+..+..++..|+.
T Consensus 386 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 386 GIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 999988888899999988888877776623455555555555555544444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.8e-05 Score=81.97 Aligned_cols=147 Identities=9% Similarity=-0.160 Sum_probs=109.0
Q ss_pred hhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccc
Q 008902 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (549)
Q Consensus 96 l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (549)
.++.+|+++...+.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+...+...-...... .
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g---i------ 348 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG---I------ 348 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccC---C------
Confidence 3457899999999999998999999999999999886 99999999998888876554322110000000 0
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008902 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (549)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~ 255 (549)
.+...+....++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.+.
T Consensus 349 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 349 ---------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred ---------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223334466777777777888999999999988 99999999999999999999999999887
Q ss_pred hc-----hhHHHHHHHH
Q 008902 256 HG-----WGSAFGALAI 267 (549)
Q Consensus 256 ~g-----w~~~f~i~~~ 267 (549)
.| ++..+.+..+
T Consensus 414 ~g~~~~~~~~~~~~i~i 430 (468)
T TIGR00788 414 IGITCDNSNNLWLLILG 430 (468)
T ss_pred cCCCcccccchHHHHHH
Confidence 76 5544443333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00049 Score=75.11 Aligned_cols=148 Identities=11% Similarity=0.016 Sum_probs=84.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
+..++.....++...+..++.+....+....+-+..|.+... ............++..++.++.||+ |||+.++.+..
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence 334555555555555555544333333344445556665433 3344445566677777889999997 99999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
.+.++.++++........... + ........+....+.......+..+....+.+|.+|.+.
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~---- 428 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPN---S------------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL---- 428 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCC---c------------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence 999999888876432111100 0 000111222222222333333334555567899999988
Q ss_pred hhhhhHHHHHH
Q 008902 225 THLDRFFNFFY 235 (549)
Q Consensus 225 ~~r~~~~~~~~ 235 (549)
|+.+.++-.
T Consensus 429 --r~~~~s~~~ 437 (513)
T KOG0254|consen 429 --RSKGASLAV 437 (513)
T ss_pred --HhhhHHHHH
Confidence 777777633
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.9e-05 Score=81.68 Aligned_cols=181 Identities=14% Similarity=0.022 Sum_probs=122.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHH--------HHHHHH-HHHHHHHhHHHHHhhhhcchhH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNFL-GISQASSVLGGFLADAYLGRYW 137 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~--------~~~~~~-~~~~~~~l~~G~laDr~~GR~~ 137 (549)
|-+..+...+.-|..-+++|+...+...-+ +..++.+.+... ...+.. .++..+..++..+.|++ ||++
T Consensus 302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~ 379 (538)
T KOG0252|consen 302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKY 379 (538)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHH
Confidence 335666777777788888888777654444 445554433222 111111 22223556667789987 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHH-HHHHHhhcccchhhhhhhhccC
Q 008902 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQF 216 (549)
Q Consensus 138 ~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~ 216 (549)
.-+.+.+++.+..+.++..-.. . .+...+++.. +..-++.-+.......+-+|.|
T Consensus 380 iq~~GF~~~~i~~~~~~~~y~~----~--------------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~F 435 (538)
T KOG0252|consen 380 IQLMGFFIMTIFFFVIAGPYNQ----L--------------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIF 435 (538)
T ss_pred HHHhhHHHHHHHHHHHcCCccc----c--------------------cccCceeehHHHHHHHHhcCCCceeEEeehhhc
Confidence 9999999888877776654210 0 1112222221 2223444455555666679999
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~-----~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
|.+. |+++.++...+.-+|++++.....++++ ..+.+..|++.+.++.++.+..++.
T Consensus 436 Parv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 436 PARV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred hHHH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 9999 9999999999999999999999999998 7889999999999988888776553
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0019 Score=69.34 Aligned_cols=206 Identities=15% Similarity=-0.030 Sum_probs=134.0
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hcCCChh------HH---H-HHHHHHHHHHHHHHhHHHHHhh
Q 008902 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFA------DS---S-NAVNNFLGISQASSVLGGFLAD 130 (549)
Q Consensus 62 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~-~l~~s~~------~a---~-~~~~~~~~~~~~~~l~~G~laD 130 (549)
+..+..|+.++.++.++++..++++.+..+...|+.+ .++-++. +. + +....+.+...+.+++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999999999999999999875 4543321 11 2 2223333444455566677888
Q ss_pred hhcch-hHHHHHHHHHHHHHHHHHHhhhhhcc-ccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhh
Q 008902 131 AYLGR-YWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 208 (549)
Q Consensus 131 r~~GR-~~~i~i~~~~~~ig~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~ 208 (549)
++ |+ |++..++.++..++++...+....+. ..+. + .....- .|........++...++|+..+.....-
T Consensus 331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~----~---~~~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siP 401 (477)
T TIGR01301 331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY----D---GDGESL-PPPTGIKASALIVFAILGIPLAITYSIP 401 (477)
T ss_pred Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc----c---cccccc-CcchhhHHHHHHHHHHhhHHHHHHHHHh
Confidence 86 84 67778888888887777664422100 0000 0 000000 0111112444555567888888888888
Q ss_pred hhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc--hhHHHHHHHHHHHHHHHHHHhcc
Q 008902 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGT 280 (549)
Q Consensus 209 ~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g--w~~~f~i~~~~~~~~~i~~~~~~ 280 (549)
.+++++..+++..+ .|..+++++.++.+.-.+..+..|.+.+..| -.+.+.+.++.++++.+..+...
T Consensus 402 fal~s~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~ 471 (477)
T TIGR01301 402 FALASIRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILL 471 (477)
T ss_pred HHHHHHHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhC
Confidence 89999988864422 6899999999999999988887777655444 55677788888877777665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.032 Score=59.79 Aligned_cols=168 Identities=10% Similarity=0.026 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCCh-----hHHHHHHHHHHHH-HHHHHhHHHHHhhhhcchhHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF-----ADSSNAVNNFLGI-SQASSVLGGFLADAYLGRYWTIAI 141 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~-----~~a~~~~~~~~~~-~~~~~l~~G~laDr~~GR~~~i~i 141 (549)
++.++...+.-||-.+.|+.+.. +++.+..+. .....+-....+. ..+..++.+++++|+ +|++.+.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 34566666677777666664443 356665532 2233333333333 333378889999997 99999888
Q ss_pred HHHHHHHHHHHHHhhhh-h-ccccCCCCCccccccccCCCCCcchh-------hHHHHHHHHHHHHHhhcccch-hhhhh
Q 008902 142 FTTIYLAGLTGITLCAT-M-KVFMPNQDNCDRISQLLGSCEPAKSW-------QMLYLYTVLYITGFGAAGIRP-CVSSF 211 (549)
Q Consensus 142 ~~~~~~ig~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~g~g~g~~~~-~~~~~ 211 (549)
....+.+...++++... . ..++|+ +.|++. .-..|.+. +.+...+..+...+......+ ...++
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~-~~~~~~-----~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~f 153 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPT-ALADKL-----LSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGF 153 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCc-HHHHHH-----HhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666655555422 0 112221 011100 00000000 011111111222333333444 67789
Q ss_pred hhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008902 212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (549)
Q Consensus 212 ~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~ 253 (549)
..|.+..++ -.++++++..+.|+|..+++.+..++.
T Consensus 154 andi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 154 ANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888 788999999999999999999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00028 Score=55.70 Aligned_cols=67 Identities=18% Similarity=-0.012 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 77 ~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
..++...+...+..+++.|++ +.|++..+.+.+.++......+++++.|+++||+ ||++.+.....+
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 334444455556778888887 5999999999999999999999999999999997 888877766543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.051 Score=57.57 Aligned_cols=193 Identities=9% Similarity=-0.118 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
..+.+....++.+.+--......+.|+.+-+.-+.--.+..-..-.+...++.+.-|.+.||. -|.+++..+.+..-+.
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLS 81 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHH
Confidence 445566677777777766666778888776654444444444444566667777778889997 8999888876665554
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+........-...+. ...+ .......++.+..++.++..-.......++--|+...=..+....+..
T Consensus 82 v~~s~~~~~~l~~~~~-----------~~~~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~ 149 (432)
T PF06963_consen 82 VAASCALFLLLLSYPS-----------SSSQ-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALAR 149 (432)
T ss_pred HHHHHHHHHHHHhCCc-----------cccc-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHH
Confidence 3332222110000000 0000 000112222222222222222222222222234432211111111444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~ 275 (549)
.-+...=.=-+.-.++|++.|.+....+...+..+.++..++++.+
T Consensus 150 ~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 150 MNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 3333333344567889999999988788887777666666666655
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=75.66 Aligned_cols=168 Identities=8% Similarity=-0.096 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHh
Q 008902 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (549)
Q Consensus 76 ~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~ 155 (549)
+..++..++.-.+.+++--++ ++++..+...|.....-..+-.+.-++.++|-.++ |+-+++.+++...++=.+.+..
T Consensus 378 ~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~ 455 (618)
T KOG3762|consen 378 FVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSY 455 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHH
Confidence 333333444434444443333 45555555555444555567777788889999997 9999999999888776666665
Q ss_pred hhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHH
Q 008902 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (549)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~ 235 (549)
. +|.|+.+..-++.|+-.+.++.++.+++++..|++- |.++-++..
T Consensus 456 L----------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~ 501 (618)
T KOG3762|consen 456 L----------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQ 501 (618)
T ss_pred h----------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHH
Confidence 4 577888888899999999999999999999999988 888888755
Q ss_pred H-HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 236 L-SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 236 ~-~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
. .-.+|-.+|.+|+|.+.+.+|-+-.|.+.+++.++.++.+...
T Consensus 502 g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 502 GIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 4 4567888888899999888888888887777776666665543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0023 Score=71.56 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHhHHHHHhhhhcc--hhHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~~G--R~~~i~i~~~~~ 146 (549)
.++...+..++....++++.+++|.|+++.+|++..+++.+.....+ +..++.+++|+++||+ + .|+++.++.++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence 57778888889999999999999999999999999999988877665 6689999999999997 6 556777777666
Q ss_pred HHHHHHHHhhhhh------------cc----ccCCCC-Ccccc-----------------------------c-c--c--
Q 008902 147 LAGLTGITLCATM------------KV----FMPNQD-NCDRI-----------------------------S-Q--L-- 175 (549)
Q Consensus 147 ~ig~~~~~~~~~~------------~~----~~~~~~-~~~~~-----------------------------~-~--~-- 175 (549)
+++.++....... |. ..+..+ .|+.. + + .
T Consensus 410 ~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~ 489 (633)
T TIGR00805 410 TLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNM 489 (633)
T ss_pred HHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcc
Confidence 6665442210000 00 000001 23210 0 0 0
Q ss_pred -c----------------CCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 008902 176 -L----------------GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (549)
Q Consensus 176 -~----------------~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~ 238 (549)
. +.|+++=......|++..++..+..+.........+-...|+++ |.-+.++.++..
T Consensus 490 ~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~~ 563 (633)
T TIGR00805 490 VYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLCM 563 (633)
T ss_pred eecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHHH
Confidence 0 11332111123444444444445444444444455568889888 999999966644
Q ss_pred -HHHHHHHHHHHHHHhhh
Q 008902 239 -TVGAIVAFTLVVYIQME 255 (549)
Q Consensus 239 -~lg~~i~~~i~~~l~~~ 255 (549)
-+|.+=+|++-|++.|.
T Consensus 564 rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 564 RVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHhcCCChhHHHhhhhhc
Confidence 56888999999998875
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.003 Score=57.14 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHH
Q 008902 109 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188 (549)
Q Consensus 109 ~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (549)
.-.++......+..++...+-+++ |.|+++.++.+.+.+-...... .+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~~ 90 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------------PNSY 90 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------------hhHH
Confidence 344455566667777778888876 9999999999988765444332 3557
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008902 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 189 ~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~ 250 (549)
.++.+-.+.|++.+..+.....++.+..+++. +++..+++....+.+..+|.++.-
T Consensus 91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 91 TLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999998887666 777777766666666666655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.028 Score=59.68 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHH
Q 008902 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (549)
Q Consensus 111 ~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (549)
.++-.....+..++++.+-|.+ |.|+++.++...+....+.+.. .|...+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence 5556667778888999999986 9999999999988876665554 255777
Q ss_pred HHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 008902 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 246 (549)
+.+-.+.|+|.+..+.-...++.+..+++. +.+..++.......+..+|.
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Gg 155 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGG 155 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhh
Confidence 888899999999999999999999888776 55555554444444444443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0012 Score=72.60 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc-CCChhH--HHHHHHHHHHHHHHHHhHHHHHhhhhcchhH--------
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFAD--SSNAVNNFLGISQASSVLGGFLADAYLGRYW-------- 137 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l-~~s~~~--a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~-------- 137 (549)
..+|.++...+|..-+-..+..| .-++-+.+ |.+..+ ..+.++.+.+++++|-+.+|+++. +.-||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N-~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~-~~~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFN-ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEI-WSQKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeec-HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHH-HHHhhccccccchh
Confidence 36888888888876666555555 44667777 763333 333789999999999999999983 323333
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccC
Q 008902 138 -TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (549)
Q Consensus 138 -~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~ 216 (549)
.+.+..+ +.++.+++++.. ....++++-++.|++.|..++...+...|+|
T Consensus 431 ~~l~~~~~-~~~~~lll~~~~----------------------------p~~~L~~~~~lvg~~~G~~~~~~~~i~selF 481 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLTL----------------------------PKAALPLPYFIAAFANGFMAATIALVTRTIF 481 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHHC----------------------------CccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 2333344 555666665541 1146889999999999999999999999999
Q ss_pred CCCCchhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhh-------------hchhHHHHHHHHHHHHHHHHHHhcccc
Q 008902 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFIGTPL 282 (549)
Q Consensus 217 ~~~~~~~~~~r~~~~~~~~~~~~lg~~i~-~~i~~~l~~~-------------~gw~~~f~i~~~~~~~~~i~~~~~~~~ 282 (549)
. ++ -+.-+|+...+.-+|+.+= -.+.|.+.|. .-++..|.+.++..++++++-...+-+
T Consensus 482 g-k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 482 A-KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred c-cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 9 77 7888888887777877664 3455666532 137889988887777777765554433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0058 Score=66.98 Aligned_cols=152 Identities=11% Similarity=0.028 Sum_probs=99.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChh---HHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHH-HH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AI 141 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~---~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i-~i 141 (549)
+++|.+...+++.++..+.||.+..+.|......++-+.. ..+.....+..+..++.++.|.+.-++ ||.|.. ++
T Consensus 307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~ 385 (599)
T PF06609_consen 307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF 385 (599)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence 3456777778888888888999888888888888776653 445666667777888888889998775 776655 46
Q ss_pred HHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 008902 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (549)
Q Consensus 142 ~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (549)
+.++++++...++... + .|....+...++.|+|.|...........-..|+++
T Consensus 386 ~~~~~ta~~Gama~~~------~--------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~- 438 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAVR------P--------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED- 438 (599)
T ss_pred HHHHHHHHHHHHHHcc------C--------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH-
Confidence 6666665555544331 1 122233455567788887765555444434445555
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008902 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~i~~~i~~ 250 (549)
.+...++....-.+|+.++..+..
T Consensus 439 -----ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 439 -----IGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred -----HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777766666666666665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.26 Score=51.67 Aligned_cols=156 Identities=8% Similarity=-0.015 Sum_probs=100.2
Q ss_pred HHHHHHHHhhHh-cCCChhHHH-HHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 008902 88 LSVNMVTFMFYV-MHKSFADSS-NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (549)
Q Consensus 88 v~~~l~~yl~~~-l~~s~~~a~-~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~ 165 (549)
.-+++..|+++. .|++..+.. -+.-.+.-......++...+.|.. |.|++++++.+..++...++...
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~--------- 91 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG--------- 91 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH---------
Confidence 345788999987 999988876 444455556666777789999965 99999998888777766665543
Q ss_pred CCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 008902 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (549)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~ 245 (549)
.+...+-+.-++.|++.+. ..+..+++=-..|+++ -.+..++...+.-+|-.++
T Consensus 92 -------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s 145 (412)
T PF01770_consen 92 -------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFIS 145 (412)
T ss_pred -------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 3566666677777776654 3344444444444433 2333444444555555555
Q ss_pred HHHHHHHhh--hhchhHHHHHHHHHHHHHHHHHHhc
Q 008902 246 FTLVVYIQM--EHGWGSAFGALAIAMGISNMLFFIG 279 (549)
Q Consensus 246 ~~i~~~l~~--~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (549)
.+++-.+.. ..++....++......+++++.++.
T Consensus 146 ~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 146 SLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 555544433 3457777777777777777765553
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.019 Score=62.03 Aligned_cols=161 Identities=10% Similarity=-0.080 Sum_probs=101.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc-----CCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcch-hH-
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-----HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YW- 137 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l-----~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR-~~- 137 (549)
|+|...+..+++...+....|....+-+..|..+.. |++ -.+.+..+.-.+...+..|+.+++=.|. +| +|
T Consensus 264 r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~ 341 (493)
T PRK15462 264 RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRT 341 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCC
Confidence 334445555555555555666666666777776543 322 1233444454454455555555554443 22 11
Q ss_pred -----HHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhh
Q 008902 138 -----TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212 (549)
Q Consensus 138 -----~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ 212 (549)
=+.+++++..++.+.+.+...... + ....+..++++..++.++|.-+..|...+++
T Consensus 342 ~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~--~-----------------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~ 402 (493)
T PRK15462 342 VRIWGKFALGLGLMSAGFCILTLSARWSA--M-----------------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQI 402 (493)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhcC--C-----------------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHH
Confidence 156777777778777766532110 0 0013566777888889999999999999999
Q ss_pred hccCCCCCchhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHH
Q 008902 213 ADQFDERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYI 252 (549)
Q Consensus 213 ad~~~~~~~~~~~~r~~~~~~~~~~-~~lg~~i~~~i~~~l 252 (549)
+++.|++- ++..++.++.. ..+|..++..+.++.
T Consensus 403 ~~laP~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 403 TRIEIPGV------TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHhChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988 99999998774 467777776666655
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00051 Score=71.34 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh---cchhHHHH-HHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTT 144 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GR~~~i~-i~~~ 144 (549)
+.++.+..+.+...+++-.=.+++++|+. .+|.+..-.+.+-...-+...+.+++-|..|||. |||||-++ .+.+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 56777777777777777666677888874 7888887777776677778888899999999985 68877655 4555
Q ss_pred HHHHHHHHHHhhhhh-ccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 008902 145 IYLAGLTGITLCATM-KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~ 223 (549)
...++.+++..+.-. +.+.++.. .+........++++..+.=+..-..+...-++++|+..+++.+
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~------------~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~- 177 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNER------------KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKK- 177 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcc------------cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhh-
Confidence 555666655554321 11111100 0122245667777777777888788888999999999776622
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008902 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (549)
Q Consensus 224 ~~~r~~~~~~~~~~~~lg~~i~~~i~~~l 252 (549)
.++.+++.+.+.+|+.+|..+.+|.
T Consensus 178 ----~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 178 ----TRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred ----hccchhHHHHHHhcceeeeeccccc
Confidence 1288888888999998887777643
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0091 Score=66.27 Aligned_cols=86 Identities=10% Similarity=0.093 Sum_probs=66.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHH-HHHHHHHHhHHHHHhhhh-cchhHHHHH
Q 008902 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAY-LGRYWTIAI 141 (549)
Q Consensus 64 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~-~~~~~~~~l~~G~laDr~-~GR~~~i~i 141 (549)
...++ ..+...+...++.+.+-+..+++|-|+.++++.+...+..+.... .-+..+|..+||++.-|+ +.-|.+..+
T Consensus 388 ll~N~-if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~ 466 (735)
T KOG3626|consen 388 LLSNP-IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKF 466 (735)
T ss_pred HhcCc-hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHH
Confidence 34455 577888899999999999999999999999999999999887654 456778899999999886 445555554
Q ss_pred HHHHHHHHH
Q 008902 142 FTTIYLAGL 150 (549)
Q Consensus 142 ~~~~~~ig~ 150 (549)
.++..++.+
T Consensus 467 ~~~~~~l~l 475 (735)
T KOG3626|consen 467 VIVCSVLSL 475 (735)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00011 Score=80.10 Aligned_cols=187 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHH-HHHHHHhHHHHHhhhh-cchhHHHH
Q 008902 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIA 140 (549)
Q Consensus 63 ~~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~-~~~~~~l~~G~laDr~-~GR~~~i~ 140 (549)
...+++ .++...+...++.+..-++.+++|-|+..+|++++++++.+.....+ +..+|.++||++..|+ ++.|.++.
T Consensus 300 ~Ll~Np-~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~ 378 (539)
T PF03137_consen 300 RLLTNP-VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAK 378 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHH
Confidence 333444 57778888888999999999999999999999999999988776554 7789999999999997 45566655
Q ss_pred HHHHHHHHHHHHHHhhhhh-----c--cccCC-------------CCCccccc------cccCCCCCcchhhHHHHHHHH
Q 008902 141 IFTTIYLAGLTGITLCATM-----K--VFMPN-------------QDNCDRIS------QLLGSCEPAKSWQMLYLYTVL 194 (549)
Q Consensus 141 i~~~~~~ig~~~~~~~~~~-----~--~~~~~-------------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 194 (549)
+..+..++..+........ + -+..+ ...|+... -..+.|+.+-..+...|++..
T Consensus 379 ~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~ 458 (539)
T PF03137_consen 379 FCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILL 458 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHH
Confidence 5555554444331111000 0 00000 01111100 012345544223445555555
Q ss_pred HHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Q 008902 195 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 195 ~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~-~~~lg~~i~~~i~~~l~~~~ 256 (549)
++..+..+..........-...++++ |..+.++... .--+|..=+|++-|.+.|..
T Consensus 459 ~~~~~~~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 459 FILSFFTFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 55555555544444455558888888 9999998555 44578888999999888864
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0057 Score=59.27 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=91.1
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcc
Q 008902 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 170 (549)
....|+.+.+++...+.+.+.-.-.+...+...+.|-|+|+- |||+......+ .+++..+.-+
T Consensus 58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyci----tYiLsCiTKh------------ 120 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCI----TYILSCITKH------------ 120 (454)
T ss_pred ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehH----HHHHHHHhhc------------
Confidence 345677788888888888777777777788888889999986 99997655444 3444444311
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhh-hhccCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHHHH
Q 008902 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF-GADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTL 248 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~ad~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~i~~~i 248 (549)
++++-.++++|.+-|+..+....+..+. ++|.-+.++=. ++=...-|+- ..+...+-+.++.+.
T Consensus 121 -------------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe-qqWls~TFskA~ffgNglvAiiaGlf 186 (454)
T KOG4332|consen 121 -------------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE-QQWLSVTFSKAVFFGNGLVAIIAGLF 186 (454)
T ss_pred -------------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh-HhhhhHHHHHHHHhhccHHHHHHHHH
Confidence 1456778899999999888776665543 45554332200 0001111111 111222233334444
Q ss_pred HHHHhhhh--chhHHHHHHHHHHHHHHHHHHh
Q 008902 249 VVYIQMEH--GWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 249 ~~~l~~~~--gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
+-++.+.. |--.+|-.+++...++..+.+-
T Consensus 187 gn~lvd~~slGPVAPFdAAacfLaigmAvil~ 218 (454)
T KOG4332|consen 187 GNLLVDTFSLGPVAPFDAAACFLAIGMAVILS 218 (454)
T ss_pred HHHHHHHhccCCCCchHHHHHHHHHHHHHHHh
Confidence 44455554 4456666666555555555443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.099 Score=57.04 Aligned_cols=175 Identities=13% Similarity=0.089 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHH-HHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYLA 148 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~-i~i~~~~~~i 148 (549)
.+..+.+..-+..+.+- ....-.+...+|-+....+.+++.+.++..+|..++|+++++. -|+.. +-+...+...
T Consensus 18 ~l~~~~f~sg~~~L~yE---v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~ 93 (521)
T PRK03612 18 LLLAAVFVCAACGLVYE---LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGG 93 (521)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHH
Confidence 33333333333344443 3334455566888888889999999999999999999887543 22222 1111111111
Q ss_pred HH-HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 149 GL-TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 149 g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
.. .++...... . ......++...++.++..|+..|....+..+... ++ -
T Consensus 94 ~~~~ll~~~~~~--~---------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~ 143 (521)
T PRK03612 94 LSALILYAAFAF--Q---------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------L 143 (521)
T ss_pred HHHHHHHHHHHH--H---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------h
Confidence 11 111111000 0 0111122233345567677766666555543322 11 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh-hhch-hHHHHHHHHHHHHHHHHHHh
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGW-GSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~-~~gw-~~~f~i~~~~~~~~~i~~~~ 278 (549)
++..+-.|....+|+++|.++.+++.- ..|- +..+.++.+..+++++.++.
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888999999988887643 5563 44444444444444444333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.021 Score=58.40 Aligned_cols=152 Identities=14% Similarity=0.118 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl-~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
...+.++....+.....|....+...++ .+.+|+++.+.+-+.+.-.+...+.++.-....||..|.-+..+...++.+
T Consensus 260 i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~ 339 (451)
T KOG2615|consen 260 ISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI 339 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHH
Confidence 3566666665555555555555556666 567999999999888888888888888888888887555444443333333
Q ss_pred H-HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 148 i-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
+ ..+++... .....++++..+..+..+...++...++....|++.
T Consensus 340 vP~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------ 385 (451)
T KOG2615|consen 340 VPAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------ 385 (451)
T ss_pred HHHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------
Confidence 3 22333322 234677788888888888899999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (549)
||+..++......++=++||.++|.+..
T Consensus 386 rG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 386 RGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 9999999999999999999999987643
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.072 Score=58.18 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
....+.+..+...+.+|+...+ ...+|.+.......... .........+.+-|++ |||.....+.++..++
T Consensus 323 ~~~~~~~~~~~~~~~y~gl~~~-----~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~ 393 (521)
T KOG0255|consen 323 RTLYLLFIWFVFSLVYYGLSLN-----VSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIG 393 (521)
T ss_pred HHHHHHHHHHHHhHHHHhhhhh-----hhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 4444444444444555444333 33455444333222222 3344445557899987 9999999999998888
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (549)
.+....... . .......+...+..++.+....+...+.+|++|+.. |..
T Consensus 394 ~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~ 442 (521)
T KOG0255|consen 394 LLLFGWLPD-----D--------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNT 442 (521)
T ss_pred HHHHHHhhc-----c--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHH
Confidence 888777522 0 110122222333334444445566888899999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008902 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 230 ~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (549)
+.+.......+|++++|.+......
T Consensus 443 ~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 443 AVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988755543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0086 Score=62.37 Aligned_cols=184 Identities=13% Similarity=0.039 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~ 150 (549)
+.++..........+|+..+.+-.- ...-|.+...+|.+.....+.+.++.++.|.++||.-.-|.++.+......++.
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~ 346 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT 346 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4444444444444555554443322 234567778888888889999999999999999997344455555555555553
Q ss_pred HHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 008902 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~ 230 (549)
..+..... .+ .....++....+.|++..+..|...-+..|..-+.. -++.
T Consensus 347 ~~l~~~t~----~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tS 396 (480)
T KOG2563|consen 347 LMLLTCTL----FL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTS 396 (480)
T ss_pred HHHHHhhc----cC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------Cccc
Confidence 22211111 01 122344445566777777778877777777654333 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc----hhHHHHHHHHHHHHHHHHHHhccccccc
Q 008902 231 FNFFYLSVTVGAIVAFTLVVYIQMEHG----WGSAFGALAIAMGISNMLFFIGTPLYRH 285 (549)
Q Consensus 231 ~~~~~~~~~lg~~i~~~i~~~l~~~~g----w~~~f~i~~~~~~~~~i~~~~~~~~~~~ 285 (549)
.++.....++.+.+=.++.+...+..+ |...-+.......+.+++..+.|+.|+.
T Consensus 397 sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 397 SGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred ceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 455556566666666666666666555 3333333444444555555555555543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.28 Score=50.32 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=89.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhh-----hhcchhHH
Q 008902 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWT 138 (549)
Q Consensus 64 ~~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laD-----r~~GR~~~ 138 (549)
.++..+.+..+++....+.+-. |....+| ++-+.-|.|-++.+... +...=+-.-++++++-| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP-~lL~ak~vSyt~~a~fS--~ay~P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIP-LLLQAKGVSYTSQAIFS--FAYWPFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhhhH-HHhcCCCcchhhhhhhh--hhhhHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 3455567888888888876655 7777545 44445666655544222 22222344567888889 76 99997
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 008902 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (549)
Q Consensus 139 i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (549)
-++-. -+.+|.+++.++...+... -+....++...+....+++-+..+..-.++....-.+..+
T Consensus 101 Wvvp~-q~llG~~mllLs~~v~~~~---------------g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~ 164 (510)
T KOG3574|consen 101 WVVPC-QYLLGLFMLLLSYLVDRGL---------------GGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR 164 (510)
T ss_pred eeeeh-HHHHHHHHHHHhhCCCccc---------------ccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH
Confidence 65433 2445555555553211100 0001112333333333455555555556666666677776
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008902 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (549)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~ 249 (549)
++ .+-+-.....+.+.|.+++..+.
T Consensus 165 e~------lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 165 EN------LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hh------cCchhHHHHHHHhhhHHhhccee
Confidence 66 56666666677788888776544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.012 Score=63.08 Aligned_cols=128 Identities=12% Similarity=0.059 Sum_probs=105.1
Q ss_pred HHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCcc
Q 008902 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (549)
Q Consensus 91 ~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 170 (549)
.+..|+...++++..+.+...+.......++.++...+--+.+|-++++.+|++...+...+.+++
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------------- 328 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------------- 328 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--------------
Confidence 446788889999999999999999999999998888544444598889999999999999988887
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008902 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~ 250 (549)
++.++.+.+..+.++ .+...+...++.+-+.+.++ ++..+++....-.+.++++|.+-+
T Consensus 329 --------------~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 329 --------------TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred --------------ccchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHH
Confidence 455666666655444 46678999999999999988 999999999999999999988777
Q ss_pred HHh
Q 008902 251 YIQ 253 (549)
Q Consensus 251 ~l~ 253 (549)
.+.
T Consensus 388 ~i~ 390 (463)
T KOG2816|consen 388 NIF 390 (463)
T ss_pred HHH
Confidence 654
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.053 Score=43.43 Aligned_cols=64 Identities=8% Similarity=-0.070 Sum_probs=56.6
Q ss_pred HHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q 008902 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (549)
Q Consensus 92 l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~ 156 (549)
+.+.+.++.++|.++++.+.+...+++.+|.+...++.++. .+++.+..+.++.++.++.+++.
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577899999999999999999999999999999999985 78888889998888888887775
|
Note that many members are hypothetical proteins. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.069 Score=45.90 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=32.4
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008902 478 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 515 (549)
Q Consensus 478 ~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~v~~ 515 (549)
+..+..|++.|+.++++......+|..+++.+.+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 75 LIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 34566899999999999999999999999998887643
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.1 Score=54.82 Aligned_cols=137 Identities=9% Similarity=-0.022 Sum_probs=76.4
Q ss_pred hHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhh---cchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccc
Q 008902 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (549)
Q Consensus 97 ~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~---~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 173 (549)
.+..|.+..+......++.+++.+|.++||.++|++ +-|-.+..+..+...++........... +. .+.
T Consensus 275 ~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~---~~--~~~--- 346 (493)
T KOG1330|consen 275 YELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF---PA--FTS--- 346 (493)
T ss_pred HHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH---Hh--hhh---
Confidence 334455556666777788899999999999999984 1221234444444333332222111100 00 000
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhh-cccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHH-HHHHHHHHHHHHH
Q 008902 174 QLLGSCEPAKSWQMLYLYTVLYITGFGA-AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVY 251 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~-g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~-~lg~~i~~~i~~~ 251 (549)
.+. .+.+.++++|.-. -..++....+..+..|++. |.+++++-+... .+|-+-+|.+.|.
T Consensus 347 -----------~s~-~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~------Rt~a~a~~~~~~h~fgd~~~p~ivGi 408 (493)
T KOG1330|consen 347 -----------SSM-IFGLILFLVGETISWFNWATNNPIFLEVVPPSR------RTTAYALDTVFEHIFGDAASPYIVGI 408 (493)
T ss_pred -----------HHH-HHHHHHHHHHHHHHhcccccccceeeEecCccc------ccHHHHHHHHHHHHhccCCCcceehh
Confidence 121 2222223333222 2334455566778889888 999999966644 4555556668888
Q ss_pred Hhhhh-chh
Q 008902 252 IQMEH-GWG 259 (549)
Q Consensus 252 l~~~~-gw~ 259 (549)
+.++. ||+
T Consensus 409 lsd~l~g~~ 417 (493)
T KOG1330|consen 409 LSDKLRGYK 417 (493)
T ss_pred HHHHhhCCC
Confidence 88764 566
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.072 Score=56.84 Aligned_cols=202 Identities=12% Similarity=0.110 Sum_probs=119.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHH--HHHHhHHHHHhhhhcc---hhHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGIS--QASSVLGGFLADAYLG---RYWTIA 140 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~--~~~~l~~G~laDr~~G---R~~~i~ 140 (549)
-.|+..+.++...+...+.+..+.+..+.+....++++.+++....+...... ....+...+..-|. | +|+.+.
T Consensus 259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r~~~~ 337 (488)
T KOG2325|consen 259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKRRIIL 337 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccceeee
Confidence 34667788888888888888877887788888888888877654444433222 22222333333332 3 244444
Q ss_pred HHHHHHHHHHHHHHhh-hhhc-cccCC---CCCccccccccCCCCCcchhhHHHHHHHH-HHHHHhhcccchhhhhhhhc
Q 008902 141 IFTTIYLAGLTGITLC-ATMK-VFMPN---QDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGAD 214 (549)
Q Consensus 141 i~~~~~~ig~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad 214 (549)
.+.++......+.... ...+ .+.+. ...|+ +.+..-|+.....+...++++. ++.|.+.-.+.....++-++
T Consensus 338 ~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~--~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySk 415 (488)
T KOG2325|consen 338 LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCD--FEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSK 415 (488)
T ss_pred ehHHHHHHhhheeeeeccccccccccccccccCcC--cccchhhccCcccChhhheeehhheeccccccccchHHHHHHH
Confidence 3422222222211111 0000 00110 01121 1122237766666666666664 44566666667778888999
Q ss_pred cCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q 008902 215 QFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 215 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~ 276 (549)
+..+++ .+...+++.....++..++|+....+....|.++...+..+..++...++
T Consensus 416 iLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 416 ILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW 471 (488)
T ss_pred HhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 999888 77777888888899999999999888888887776665555444444433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.6 Score=46.56 Aligned_cols=120 Identities=19% Similarity=0.093 Sum_probs=74.0
Q ss_pred HHHHHHHHHhHHHHHhhhh--cchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHH
Q 008902 114 FLGISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191 (549)
Q Consensus 114 ~~~~~~~~~l~~G~laDr~--~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (549)
...+..++.++.+.+++|. +||++++.++.+++.++.++..+.. |...|- .. ...-+....++.....
T Consensus 288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~----~~----t~~~~~~~~~~~~~~~ 357 (461)
T KOG3098|consen 288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPL----RP----TDSPPLLFTPSYYLAL 357 (461)
T ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCCC----CC----CcccccccccchhHHH
Confidence 3344555566667777664 5999999999999998887776653 211110 00 0000111123344444
Q ss_pred HHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008902 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (549)
Q Consensus 192 ~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~ 250 (549)
+.-+++|++-+........++++.+|+ + |..+++++-+-..+++.++.....
T Consensus 358 ii~~l~G~~D~~~~t~~~~ii~~~~~~-~------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 358 IIGFLLGFGDACFNTQRYVIIALLYPD-D------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcC-c------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 555788999999999999999999954 4 677777765555555555444333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.75 Score=48.98 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------Hhhhhch
Q 008902 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY------IQMEHGW 258 (549)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~------l~~~~gw 258 (549)
.+.++++.+.+++++|.=+..|...++.+...|++- .+..++.+......|..++..+++. ..+....
T Consensus 392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~ 465 (498)
T COG3104 392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE 465 (498)
T ss_pred cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh
Confidence 467888889999999999999999999999999866 6777888877777777777666652 1223334
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 008902 259 GSAFGALAIAMGISNMLF 276 (549)
Q Consensus 259 ~~~f~i~~~~~~~~~i~~ 276 (549)
...|+..++...+..++.
T Consensus 466 ~~~F~~~g~v~i~~~~~~ 483 (498)
T COG3104 466 GRVFGTIGVVAIVIGILL 483 (498)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 456665555444444433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.38 Score=50.36 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008902 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (549)
+.+..++..+..|+..|..+.+....+.|..++++ |...++...++-++|..++.+++-.+..
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45555566677899999999999999999888776 9999999999999998888877766543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.55 E-value=7.2 Score=40.95 Aligned_cols=162 Identities=7% Similarity=0.008 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhcCC----------C------------hhH-HHHHHHHHHHHHHHHHhHHHHHhhh
Q 008902 75 FGNEMAERMAYFGLSVNMVTFMFYVMHK----------S------------FAD-SSNAVNNFLGISQASSVLGGFLADA 131 (549)
Q Consensus 75 ~~~~~~~~~~~~~v~~~l~~yl~~~l~~----------s------------~~~-a~~~~~~~~~~~~~~~l~~G~laDr 131 (549)
.+..+|+++.|..+.+....-+.+..+. + +.. .+.+..+-.+-..+.-++.-+..+|
T Consensus 6 w~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi~~ 85 (402)
T PF02487_consen 6 WLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFFIHR 85 (402)
T ss_pred HHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhhhhh
Confidence 3455778888877777655444411110 0 111 1223333444555556667777887
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhh
Q 008902 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF 211 (549)
Q Consensus 132 ~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 211 (549)
+ --+.=+.+..++.++|+++.+++ .+...-+++..+.+++.|......-++
T Consensus 86 v-~y~~Ri~~~~~l~~~g~l~va~~----------------------------~~v~~~l~Gv~las~ssg~GE~tfL~l 136 (402)
T PF02487_consen 86 V-PYWIRILICVALSAAGMLLVAFS----------------------------PSVWVRLLGVVLASLSSGLGEVTFLSL 136 (402)
T ss_pred c-cchHHHHHHHHHHHHHHhheeec----------------------------cchhHHHHHHHHHhhhhhhhHHHHHHH
Confidence 6 42222334444666677776654 355666788888888888777666665
Q ss_pred hhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc--hhHHHHHHHHHHHHHHHHHH
Q 008902 212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 212 ~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g--w~~~f~i~~~~~~~~~i~~~ 277 (549)
. ..+++. ..+.+..+...++.+|+..-..+.. .| -|..+.+.....++..+.++
T Consensus 137 t-~~y~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f 192 (402)
T PF02487_consen 137 T-HFYGKS----------SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYF 192 (402)
T ss_pred H-HhcCcc----------ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4 344432 2233444555556666554444444 44 45566655544444444433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.8 Score=45.99 Aligned_cols=135 Identities=9% Similarity=-0.092 Sum_probs=97.8
Q ss_pred HHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Q 008902 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (549)
Q Consensus 88 v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~ 167 (549)
.-..+..|+... |++....+..-+.-.+....+..+..++.+|+ |--|+=+++.....+...+...+...|.
T Consensus 277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~------ 348 (432)
T PF06963_consen 277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG------ 348 (432)
T ss_pred CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 344578888877 99999999888888888999999999999997 9999988888877766655554433211
Q ss_pred CccccccccCCCCCc-chhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 008902 168 NCDRISQLLGSCEPA-KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (549)
Q Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~ 246 (549)
+| +..+...++.+..+.=+|.=+.--+..-++-|..|+++ |+...+.-+.-.++.-.+..
T Consensus 349 -------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~ 409 (432)
T PF06963_consen 349 -------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSF 409 (432)
T ss_pred -------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHH
Confidence 01 12345555556555556666666777788888888877 99999987777777666665
Q ss_pred HHH
Q 008902 247 TLV 249 (549)
Q Consensus 247 ~i~ 249 (549)
.++
T Consensus 410 ~~~ 412 (432)
T PF06963_consen 410 VLT 412 (432)
T ss_pred HHH
Confidence 443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.89 E-value=11 Score=40.71 Aligned_cols=169 Identities=13% Similarity=0.048 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC---hhHHHHHHHH-HHHHHHHHHhHHHHHhhhhcchhHHHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNN-FLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s---~~~a~~~~~~-~~~~~~~~~l~~G~laDr~~GR~~~i~i~~ 143 (549)
++.++.+.+.-|+-.+.|..+. -+++.+=.+ ++....+=.. ..=...+...+-.++++++ +|.+++.+..
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~ 96 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIII 96 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 4567777777777666553222 223322222 2222222221 2224556677789999997 9999998887
Q ss_pred HHHHHHHHHHHhhhhhc---cccCCCCCccccccccCCCCCcchh------hHHHHHHHHHHHHHhhcccch-hhhhhhh
Q 008902 144 TIYLAGLTGITLCATMK---VFMPNQDNCDRISQLLGSCEPAKSW------QMLYLYTVLYITGFGAAGIRP-CVSSFGA 213 (549)
Q Consensus 144 ~~~~ig~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~g~g~g~~~~-~~~~~~a 213 (549)
..+.....++++... | .++|+. .+.+ + ....++.-. +.+.+.+.-.+.-+-.....+ ....+..
T Consensus 97 ~~F~~fF~~f~~vly-P~~~~lhp~~-~~~~---~-~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN 170 (491)
T PF03219_consen 97 IPFLGFFALFAFVLY-PNRDILHPDA-FADK---L-LAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFAN 170 (491)
T ss_pred HHHHHHHHHHHHHHh-hchhhcCCCH-HHHH---h-hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666655432 3 233320 0100 0 000000000 001111111111122122222 3578888
Q ss_pred ccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008902 214 DQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 214 d~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (549)
|.++.++ -.+++.++..+.|+|..++..+..++.+
T Consensus 171 ~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 171 EITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred hcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888 7889999999999999999998888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.064 Score=57.23 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHH-HHHHHHHHHHHh
Q 008902 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT-TIYLAGLTGITL 155 (549)
Q Consensus 87 ~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~-~~~~ig~~~~~~ 155 (549)
.+...++.|. +++|+++.+.+.+...--+..++.+|++|++|||+ -++|-++++. +..+...+++.+
T Consensus 29 ~l~pll~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 29 SLFPLLAVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred ccchHHHHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHheee
Confidence 4667788887 47999999999999999999999999999999998 5555555444 444444444443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.93 E-value=15 Score=39.30 Aligned_cols=167 Identities=10% Similarity=0.046 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC---hhHHHHHHHHHHH-HHHHHHhHHHHHhhhhcchhHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIF 142 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s---~~~a~~~~~~~~~-~~~~~~l~~G~laDr~~GR~~~i~i~ 142 (549)
-++.++.+.+..+|-.+.++.+. -+.+.+.++ +.....+-..... .+.+..++-+++.+++ -|.+++.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence 35677777777777766664333 234555444 2333333344444 6677888899999986 999998888
Q ss_pred HHHHHHHHHHHHhhhhhc---cccCCCCCccccccccCCCCCcch----------hhHHHHHHHHHHHHHhhcccc-hhh
Q 008902 143 TTIYLAGLTGITLCATMK---VFMPNQDNCDRISQLLGSCEPAKS----------WQMLYLYTVLYITGFGAAGIR-PCV 208 (549)
Q Consensus 143 ~~~~~ig~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g~g~g~~~-~~~ 208 (549)
...+....+++++... | .++|++..-+.- + ..-|.. +....+++ +.-+-..... -..
T Consensus 99 ~~~F~~fF~LFa~Vi~-P~~~~~hp~~~~~~~~-~----~~~p~~l~~~ili~~~Ws~s~~Yi---~aELWgslV~S~lF 169 (509)
T COG3202 99 LGFFLGFFALFAFVIY-PYKDILHPDPEFSRDL-F----ADLPMFLKWFILIVGEWSYSLFYI---MAELWGSLVLSLLF 169 (509)
T ss_pred HHHHHHHHHHHHHHHh-ccccccCCCHHHHHHH-H----hhCCccceeeeEeecchHHHHHHH---HHHHHHHHHHHHHH
Confidence 7777777777766543 2 122210000000 0 000100 11112221 1112112222 244
Q ss_pred hhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008902 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (549)
Q Consensus 209 ~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~ 254 (549)
..+..|++..++ -.+++++++...|++..++..+..++.+
T Consensus 170 w~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 170 WQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677789998887 7889999999999999999988888765
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.3 Score=43.47 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhcchhH---HHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcc
Q 008902 107 SSNAVNNFLGISQASSVLGGFLADAYLGRYW---TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 183 (549)
Q Consensus 107 a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~---~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (549)
.+.+.+.++..+.+|+-+...+..| .|.+ .+.+..++..+...+..+.. +..| +
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a~l~Lpilt~---~vsP------------------~ 340 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIAALLLPILTS---SVSP------------------S 340 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHHHHHHHHHHh---ccCC------------------C
Confidence 4677888888777777766666554 2222 23333333322222222211 1112 1
Q ss_pred hhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHH
Q 008902 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (549)
Q Consensus 184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~ 263 (549)
..+...-+++..++-...|..+|.+.-+=.+..|++. |.+.++++....|+..-++-...---....+-|.+|.
T Consensus 341 kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~ 414 (454)
T KOG4332|consen 341 KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFG 414 (454)
T ss_pred cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhh
Confidence 1233334566666677788899999888888888887 9999999999888755443211000001235678899
Q ss_pred HHHHHHHHHHHHH
Q 008902 264 ALAIAMGISNMLF 276 (549)
Q Consensus 264 i~~~~~~~~~i~~ 276 (549)
++.+.+.++.+..
T Consensus 415 icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 415 ICSAFLFVASILQ 427 (454)
T ss_pred hhHHHHHHHHHHH
Confidence 8888777765543
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.52 E-value=5 Score=40.61 Aligned_cols=116 Identities=16% Similarity=0.055 Sum_probs=65.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
++..|.++.+...-+. .+..|.-..++.+.....+|... .+.+.. ......++.+.+-.+ +|-|+++.++..
T Consensus 25 ~~~~knv~i~s~~fl~-~f~a~~gl~nlq~~vn~~lg~~s--l~~~y~----~l~~s~m~~~~~Ir~-~g~K~tm~lav~ 96 (390)
T KOG3097|consen 25 LGILKNVLILSIAFLL-TFTAYLGLQNLQTSVNYDLGTVS--LGALYL----SLIDSSMFMPLLIRF-LGTKWTMVLAVF 96 (390)
T ss_pred cchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhcCcccch--hhhhhH----HHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 3444555555444333 44444555567777665444322 122222 222233333455554 599999988877
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (549)
.+.... +..+ . ..+..++.+-...|+|.+..+..-.+++++.-.
T Consensus 97 ~Y~lyi-----A~Nl---~---------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 97 PYALYI-----AANL---E---------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHH-----Hhhc---c---------------------hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 655432 2110 0 345566667778899999999888888776644
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=88.02 E-value=7.5 Score=41.79 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=32.1
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008902 478 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 513 (549)
Q Consensus 478 ~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~v 513 (549)
+++.-+|++.|+++.|++.....+|..+++.+.+++
T Consensus 138 yI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 138 YIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999999999999999999999999984
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=85.82 E-value=17 Score=38.73 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008902 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i 248 (549)
+.+..++..++.|+..|-..+....+..+..++++ |..+-.+..++.++|-.+|..+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666788899998888888888888877654 5555555555666665555443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=82.82 E-value=74 Score=34.32 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=50.0
Q ss_pred HHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHH
Q 008902 197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (549)
Q Consensus 197 ~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~ 271 (549)
.++........--..+.+++|++.. |..+++-++...++...+..++.+.+.+..||.....+.-+...+
T Consensus 276 y~~~~nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 276 YGISINLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444455555566777888876542 899999988888888866666668999999999777655444444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=82.51 E-value=6 Score=42.18 Aligned_cols=54 Identities=11% Similarity=-0.038 Sum_probs=41.1
Q ss_pred HHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008902 197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (549)
Q Consensus 197 ~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~ 256 (549)
..+..+...-....+.+++.|+.. -++.+++.....|+|..++..++..+.+..
T Consensus 328 ~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 328 EEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333334444555667899999887 799999999999999999998888876544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 549 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-11 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 1e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 293 bits (751), Expect = 5e-93
Identities = 98/518 (18%), Positives = 183/518 (35%), Gaps = 90/518 (17%)
Query: 64 KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
W + +I +E ER +++G+ + F+ + S A + + ++F+
Sbjct: 6 DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
+LGG++AD + G+Y TI + IY G + +
Sbjct: 66 GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
+ YT L++ G+ GI+P VSSF DQFD+ K+ + F+ FY
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
++ G+ A + + G AFG + M ++ + F++G Y H P
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LE 350
V+ +A + + L + + G SA I L A +
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
+ K V+ V++++R++ + A + + + + QA M +
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---V 330
Query: 411 GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSV 470
M L + L++ P R+ + L+++G G+A++ LS
Sbjct: 331 KPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSW 387
Query: 471 IWAGL----------------------------------LEFLYEEAPDAMKSIGSAYAA 496
I G LEF Y +AP AMK ++
Sbjct: 388 IVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWT 447
Query: 497 LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 534
L+ +G + N +KS T + ++
Sbjct: 448 LSVTVGNLWVLLANVSVKSPTVT-----EQIVQTGMSV 480
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
+F EM ER +Y+G+ ++ +M++++ + A +++ + + + S +GGF+
Sbjct: 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
AD +G + + + G + A +
Sbjct: 78 ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
L+ + + G ++P VS+ +DE + D F+ F + +GA +A +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
V Q G+ AF AI M I ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 68/456 (14%), Positives = 130/456 (28%), Gaps = 145/456 (31%)
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
K + D+ K+ I E + + +V+ +F+ + V F+
Sbjct: 36 KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84
Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
VL FL ++ T +Y+ L +VF N R
Sbjct: 85 -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135
Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
+ Q L PAK ++ + G G A +
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173
Query: 223 YKTHLDRFFNFFYLSV----TVGAIVAFTLVVYIQMEHGWGS-AFGALAIAMGISN---- 273
YK F F+L++ + ++ + Q++ W S + + I + I +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 274 MLFFIGTPLYRHRL---------------PGGSPL---TR---VAQVLVAAFRKR----- 307
+ + + Y + L + TR V L AA
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 308 -HAAFSSSELIGLY---------EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN 357
+ E+ L ++P + + R L A +++ +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNP--------RRLSIIAESIRDGLAT 343
Query: 358 PSPW------KLCTVTQV-------EEVKTL-VRL------VPIPACTIML--------- 388
W KL T+ + E + + RL IP + L
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 389 -NVILTEFLTLSV----QQAYTMNTHMGKLKLPVTC 419
V++ + S+ + T++ L+L V
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.9 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.89 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.88 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.8 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.7 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.49 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.36 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.3 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.11 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.11 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.77 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.03 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=260.93 Aligned_cols=404 Identities=22% Similarity=0.333 Sum_probs=251.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcC------CChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~------~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~ 140 (549)
+++.++.+.+..++..+++|++..+++.|+++++| ++..+.+.+.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34456778888999999999999999999999999 999999999999999999999999999999559999999
Q ss_pred HHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchh-hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 008902 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 141 i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
++.++..++.+++.++ . +...++++|++.|++.+...++..++++|.+|++
T Consensus 90 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 141 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS 141 (524)
T ss_dssp HHHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc
Confidence 9999999988887765 3 5678889999999999999999999999999987
Q ss_pred Cchhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccccccccCCCCCchHHH
Q 008902 220 SKDYKTHLD---RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296 (549)
Q Consensus 220 ~~~~~~~r~---~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 296 (549)
+ |+ ..+++++.+.++|..++|.+++++.+..||++.|++.+++.++++++++..+++.+.+++++++..+.
T Consensus 142 ~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (524)
T 2xut_A 142 N------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215 (524)
T ss_dssp T------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------
T ss_pred c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhH
Confidence 7 64 45566899999999999999999998899999999988887777666655555444333333332233
Q ss_pred HHHHHHHHHhhhcccCccccccccccCCCcccccCCcccccCCcchHhhhhh----hhcccccCCCCCC-------cccc
Q 008902 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA----LELKEDVINPSPW-------KLCT 365 (549)
Q Consensus 297 ~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~----~~~~~~~~~~~~~-------~~~~ 365 (549)
.+.+..+.++++.+. +.... +.... +.........+......+.... ...+. ..+.+| +.+.
T Consensus 216 ~~~~~~~~~~~~~~~-~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 288 (524)
T 2xut_A 216 LPVIRSALLTKVEGK-GNIGL-VLALI---GGVSAAYALVNIPTLGIVAGLCCAMVLVMGF--VGAGASLQLERARKSHP 288 (524)
T ss_dssp -----------CTTH-HHHHH-HHHHH---HHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH--HHTGGGTHHHHSCCSCC
T ss_pred HHHHHHHHhhhhccc-Cccch-hhhhh---hhhhhhhhhcccchhhhhhhhhhhhhhhhcc--cccchhhHHhhhhcccc
Confidence 333333333221100 00000 00000 0000000000000000000000 00000 000011 0111
Q ss_pred chhHHHHHHhhhhchhhhHHHHHHHHHhhhhhHHHHHHHhcccCCCCcccCCCccCchhHHHHHHHHHhhhhhhhhcccc
Q 008902 366 VTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRR 445 (549)
Q Consensus 366 ~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~~~l~rr 445 (549)
..+.+++|+++..+.++.....++..+.|..+.+..+..+++.+. + .+.+.+..++.+..++..++.+++..+..+|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (524)
T 2xut_A 289 DAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIER 365 (524)
T ss_dssp SSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC-------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHh
Confidence 112244556665666666666777777777777766665554331 1 2455666777778888888888876555555
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHH----------------------------------HHHHHHhhhccchhHHHH
Q 008902 446 ITGHPRGASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIG 491 (549)
Q Consensus 446 ~~~~~~~~~~l~~i~~G~~l~~~~~~~~----------------------------------~~~~~~~~~~P~~~rg~~ 491 (549)
++++ .....++.+|+++.+++++.. ....+..+.+|++.||.+
T Consensus 366 ~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~ 442 (524)
T 2xut_A 366 MGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442 (524)
T ss_dssp --------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTT
T ss_pred cCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHH
Confidence 4322 344455555555544433211 112234566899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008902 492 SAYAALAGGLGCFAASILNSIIKSVT 517 (549)
Q Consensus 492 ~g~~~~~~~lg~~~~~~l~~~v~~~t 517 (549)
+|+++...++|+.+++.+.+.+...+
T Consensus 443 ~g~~~~~~~~g~~~g~~~~g~~~~~~ 468 (524)
T 2xut_A 443 MSFWTLSVTVGNLWVLLANVSVKSPT 468 (524)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999998876543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-25 Score=238.36 Aligned_cols=379 Identities=19% Similarity=0.236 Sum_probs=257.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-----cCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~-----l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i 139 (549)
+++++.++.+.+..++..+++|++..+++.|+++. +|++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~ 88 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV 88 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 44566888999999999999999999999999998 9999999999999999999999999999999933999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 008902 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (549)
Q Consensus 140 ~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (549)
.++.++..++.++++++ .+...++++|++.|+|.+...++..++++|.+|++
T Consensus 89 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 140 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH 140 (491)
T ss_dssp HHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcc
Confidence 99999999998887765 35678889999999999999999999999999987
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhcccccccc---CCCC-CchHH
Q 008902 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR---LPGG-SPLTR 295 (549)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~---~~~~-~~~~~ 295 (549)
+.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++..++++..+ +++. ....+
T Consensus 141 ~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
T 4aps_A 141 DRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEE 216 (491)
T ss_dssp TTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHH
T ss_pred ccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccch
Confidence 633 777888899999999999999999999999999999998877777766665443333221 1111 11111
Q ss_pred HHHHHHH--------------HHHhhhcccCccccccccccCCCcccccCCcccccCCcchHhhhhhh-hcccccCCCCC
Q 008902 296 VAQVLVA--------------AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL-ELKEDVINPSP 360 (549)
Q Consensus 296 ~~~v~~~--------------a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~~~~~~~~~l~~a~~-~~~~~~~~~~~ 360 (549)
..+.... ...... .+..+. ............ ..... .
T Consensus 217 ~~~~~~~~g~~l~~~~~~~~~~~~~~~---~~~~~~--------------------~~~~~~~~~~~~~~~~~~-----~ 268 (491)
T 4aps_A 217 VKPLLVKVSLAVAGFIAIIVVMNLVGW---NSLPAY--------------------INLLTIVAIAIPVFYFAW-----M 268 (491)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHHSS---CCTTHH--------------------HHHHHHHHHHHHHHHHHH-----H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccC---cccccc--------------------hhhhhHHHHHHHHHHHHH-----H
Confidence 1110000 000000 000000 000000000000 00000 0
Q ss_pred CccccchhHHHHHHhhhhchhhhHHHHHHHHHhhhhhHHHHHHHh-cccCCCCcccCCCccCchhHHHHHHHHHhhhhhh
Q 008902 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTF 439 (549)
Q Consensus 361 ~~~~~~~~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~-~~~~~~g~~~~~~~~~~i~~i~~ii~~p~~~~~~ 439 (549)
|+... ....++++....+++++....++..+.+..+.+..+... .+.+ ..+.+.+..++.+..++..++.+++.
T Consensus 269 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~ 343 (491)
T 4aps_A 269 ISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLW 343 (491)
T ss_dssp C-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHH
T ss_pred hhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHH
Confidence 00000 011344555566677777778888888777765444332 2222 14677788889999999999999998
Q ss_pred hhccccccCCCCCCCchHHHHHHHHHHHHHHHHH----------------------------------HHHHHHhhhccc
Q 008902 440 VPLCRRITGHPRGASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPD 485 (549)
Q Consensus 440 ~~l~rr~~~~~~~~~~l~~i~~G~~l~~~~~~~~----------------------------------~~~~~~~~~~P~ 485 (549)
+++.||. +....++.+|+++.+++++.. ....++.+..|+
T Consensus 344 ~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~ 417 (491)
T 4aps_A 344 TAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK 417 (491)
T ss_dssp HHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT
T ss_pred HHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 8887763 344455555555544432211 233455677999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008902 486 AMKSIGSAYAALAGGLGCFAASILNSIIK 514 (549)
Q Consensus 486 ~~rg~~~g~~~~~~~lg~~~~~~l~~~v~ 514 (549)
+.||.++|+.+....+|+.+++.+.+.+.
T Consensus 418 ~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 418 AFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp TCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988866553
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=216.40 Aligned_cols=180 Identities=15% Similarity=0.146 Sum_probs=134.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCC-CCcc
Q 008902 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EPAK 183 (549)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 183 (549)
...+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++.+++......... ... ...-
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----------~~~~~~~~ 122 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----------DNTVPVYL 122 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----------SSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----------hhHHHHHH
Confidence 3456788889999999999999999997 99999999999999999988864210000000 000 0000
Q ss_pred hhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--------
Q 008902 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------- 255 (549)
Q Consensus 184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~-------- 255 (549)
..+...++++|++.|+|.|+..+..+.+++|..|++. |+...++++.+..+|..+++.+...+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 1578899999999999999999999999999999988 99999999999999999998887766432
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhccccccccCCCCCchHHHHHHHHHHHHhhhcccCccccccccccCCCcccccCCccc
Q 008902 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKI 335 (549)
Q Consensus 256 ~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~s~~~~l~~~~~~~~a~~~~~~~ 335 (549)
.+|++.+.+..+..++.++..+. .||||+| +..+++.+++.+.+++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~-L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLMLLYT--------------------------------VPESPRW-LMSRGKQEQAEGILRKI 243 (491)
T ss_dssp THHHHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHH-HHHTTCHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHH-HHHcCchhHHHHhHHHh
Confidence 34676666555544444333222 5899999 88888777766655444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-22 Score=208.15 Aligned_cols=180 Identities=13% Similarity=0.062 Sum_probs=151.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH
Q 008902 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (549)
Q Consensus 66 ~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~ 145 (549)
.+|+.++.+++..++..+..+.+...++ ++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 3466677777777777777766666655 445567 9999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 008902 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (549)
Q Consensus 146 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (549)
..++.+++++.... ..+...++++|++.|++.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~----- 152 (451)
T 1pw4_A 102 AAAVMLFMGFVPWA------------------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE----- 152 (451)
T ss_dssp HHHHHHHHHHCHHH------------------------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-----
T ss_pred HHHHHHHHHhhhhc------------------------cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-----
Confidence 99999888872100 0356788899999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHHHh
Q 008902 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~~~ 278 (549)
|++.+++++.+.++|..++|.+++++.+..| ||+.|++.++..++..++.+.
T Consensus 153 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 153 -RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp -HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888888 999999888776665554433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-20 Score=195.13 Aligned_cols=180 Identities=12% Similarity=-0.017 Sum_probs=149.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHH
Q 008902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (549)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~ 144 (549)
+++++.++.+.+..++..+..+.+... ..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 445667777777777777777555554 5567889999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++..... ..+...++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHH-------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhccc-------------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 99999888843211 0467889999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hhhc-------------------------hhHHHHHHHHHHHHHHHHHH
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~-~~~g-------------------------w~~~f~i~~~~~~~~~i~~~ 277 (549)
|+..+++++.+.++|..++|.+++++. +..+ |++.|++.++...+..++++
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 5444 99999876665555544443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=185.02 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHH
Q 008902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (549)
Q Consensus 72 ~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~ 151 (549)
+.+.+..++..+........++. +.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 44556666666766656665554 5678999999999999999999999999999999997 999999999999999988
Q ss_pred HHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 008902 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (549)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (549)
++.+. .+...++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88775 577888999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q 008902 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (549)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i 274 (549)
++++...++|..++|.+++++.+..+|++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999887766555444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=172.80 Aligned_cols=169 Identities=11% Similarity=-0.121 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig 149 (549)
..+......++..+++..+.++++.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 455566666666667767778899999999999999999999999999999999999999997 9999999888776553
Q ss_pred HHHHHhhhhhccccCCCCCccccccccCCCCCcchhhH-HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
...+...... ... ..++.++.+.+++.+...+...+...+..++.. +.++
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 3222111000 000 012233444444444333333333333332211 1155
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~ 269 (549)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 56666667778999999999998876 58999988766553
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-13 Score=138.80 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhc-chhHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYL 147 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~-GR~~~i~i~~~~~~ 147 (549)
+.++.+.+..++..+.++++..+++.|+++.+|++..+++.+.+...++..++.++.|+++||+. |||+.+.++.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 46777888888888999999999999999989999999999999999999999999999999832 88888887776655
Q ss_pred -HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 148 -ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
++.+++.+. +. .+...+.+..++.|++.+...+....+..|.+|++.
T Consensus 332 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 379 (451)
T 1pw4_A 332 TIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 379 (451)
T ss_dssp HHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------
Confidence 444443332 10 245566677788899888888888899999999888
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~l-g~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
|++.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999888777776665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-11 Score=127.03 Aligned_cols=169 Identities=9% Similarity=0.009 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~y-l~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
.++...+..++.....+++..+++.| +++.+|++..+++...+...++..++.+++|+++||+ |||+++.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 45666667777778888888999999 8888899999999999999999999999999999997 999999999988887
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+.+++.+. .+... ++..++.+++.+...+...++..|.+|++ ++
T Consensus 338 ~~~~~~~~----------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 77666554 12222 34447788899988999999989998843 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHHHH
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-w~~~f~i~~~~~~~~~i~~ 276 (549)
.+.++.. ...+|+.++|.+.+++.+..| ++..|++.+++.++.++..
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4444444 456999999999999999998 9999987766655544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=126.92 Aligned_cols=173 Identities=10% Similarity=0.053 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCC---hhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 71 ~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s---~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
.+...+..++....++....+++.|+.+.++.. ....+...+...++..++.+++|+++||+ |||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 333333334444455555567888887766532 23335555556667778899999999997 99999988887777
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++.+++.+. .+...+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 665555432 233445555556666666666667889999999877 9
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 228 ~~~~~~-~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
++..++ ++....+|+.++|.+.|++.+..|+...|.+.+++.+++.++.+.
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 998888 577888999999999999998888888888877777776665544
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=121.61 Aligned_cols=185 Identities=12% Similarity=0.026 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHH-----HHHH
Q 008902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT 144 (549)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~-----i~~~ 144 (549)
..+.+.+..++....++.....++.|+.+.++.+....+.......++..++.++.|+++||+ |||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 344455555565666666777889999998888877777777778888888899999999997 9886544 5666
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 008902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (549)
Q Consensus 145 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (549)
+..++.+++.+..... . ++...+...++++.++.|++.+...+....+..|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---- 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALY---G----------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---- 419 (491)
T ss_dssp HHHHHHTTTHHHHHHC---C----------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHhc---C----------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 6655555544431100 0 0001245566677788899999988999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHhccc
Q 008902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~~~~ 281 (549)
|+++.++++...++|..+++.+.+++.+. ++.+.|.+.+++.+++.++.+...+
T Consensus 420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887654 5666777766666666665555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.6e-10 Score=118.64 Aligned_cols=185 Identities=9% Similarity=-0.000 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
++.........+....+.+.+.. ...++.+..+.+............+...++.++++++.||+ |||+.++.+.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~ 353 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLY-YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMA 353 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHh-cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHH
Confidence 33333333333444444444444 45566677788877777777777788889999999999997 99999999988888
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHH-HHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY-TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
++.+.+...... .. .....+. +..+..+++ .+..+....+.+|.+|++.
T Consensus 354 ~~~~~l~~~~~~---~~--------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------ 403 (491)
T 4gc0_A 354 IGMFSLGTAFYT---QA--------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------ 403 (491)
T ss_dssp HHHHHHHHHHHT---TC--------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------
T ss_pred HHHHHHHHHHhc---cc--------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------
Confidence 777666554220 00 1222222 222222233 2334666788999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh------hhchhHHHHHHHHHHHHHHHHHHhcccccc
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~------~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~ 284 (549)
|+++.++.+....+|+.+++.+.+.+.+ ..++.+.|++.+++.+++.+..++..|+.+
T Consensus 404 R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 404 RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 9999999998889999988887766543 335566777777776666666655555444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-09 Score=109.37 Aligned_cols=165 Identities=12% Similarity=-0.089 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHH-HH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~-~~ 147 (549)
+.++...+..++.....+++..+++.|+++.+|.+..+++.......++..++.++.|+++||+ ||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3566677777788888888889999999988999999999999999999999999999999997 772 2223222 22
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
++..++..... + ..+...+++..++.+++.+...+...++..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0245556677788899999999999999999987 55 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHH
Q 008902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (549)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~ 267 (549)
++..++++...++|..++|.+.+.+.+..+|...+.+.++
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999999999999888888877766443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.03 E-value=4e-06 Score=89.54 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--ch-----
Q 008902 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (549)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~--gw----- 258 (549)
+...++++.++.|++.+...+....+..|.+|++. |++++++++...++|..++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 44566677788999999999999999999999988 999999999999999999999999887642 23
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhccc
Q 008902 259 ----GSAFGALAIAMGISNMLFFIGTP 281 (549)
Q Consensus 259 ----~~~f~i~~~~~~~~~i~~~~~~~ 281 (549)
+..|++.+++.+++.++++...+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33366666555555555544433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.88 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.77 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.45 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.28 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1e-20 Score=195.93 Aligned_cols=179 Identities=12% Similarity=0.048 Sum_probs=143.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHH
Q 008902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (549)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~ 146 (549)
+|..+..+++..+...+... ..+.+..++. ++|++.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~-~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRK-NFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHH
Confidence 45555544444444444332 3344556776 5899999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 008902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (549)
Q Consensus 147 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (549)
.++.+++++.... ..+...+++.|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------ 149 (447)
T d1pw4a_ 100 AAVMLFMGFVPWA------------------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------ 149 (447)
T ss_dssp HHHHHHHHHCHHH------------------------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred HHHHhhccccchh------------------------hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------
Confidence 9988887765221 0356788899999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHHHh
Q 008902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 227 r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~-gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
|++.+++++.+.++|..+++.+.+.+.... +|++.|++.++..++..++.+.
T Consensus 150 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 202 (447)
T d1pw4a_ 150 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202 (447)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHH
Confidence 999999999999999999999888776654 7999988877766555555444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.5e-17 Score=166.43 Aligned_cols=180 Identities=12% Similarity=-0.091 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHH
Q 008902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (549)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~i 148 (549)
|..|.+.+..++..++...+.+.++.|+++++|+|.++.+++.+++.++..++.+++|+++||+ ||||++.++.++..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4677888888888888877788899999999999999999999999999999999999999997 999999999888888
Q ss_pred HHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 008902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (549)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (549)
+..++.+....+ ......++.+.+.+.+.+...........+..+++. ..+.
T Consensus 86 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T d1pv7a_ 86 MFAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp THHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHS
T ss_pred HHHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhH
Confidence 777776652100 111122233333333333333333333333322221 1244
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHh
Q 008902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (549)
...+........+..+++.+++.+.+.. |+..+........+..++...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 186 (417)
T d1pv7a_ 138 FEFGRARMFGCVGWALGASIVGIMFTIN-NQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhcccccccccccccccccc-ccccccchhhHHHHHHHHHHH
Confidence 5556666777888888998888887654 444555444444444443333
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=7.1e-13 Score=135.95 Aligned_cols=180 Identities=15% Similarity=0.061 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHH
Q 008902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (549)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~v~~~l~~yl~~~l~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ 147 (549)
.+.++.+....++.....+++..+++.|+.+.++.+..+++.......+...++.+++|+++||+ +|++......+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 326 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT 326 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence 35677788888888888899999999999999999999999999999999999999999999997 87654443333332
Q ss_pred HHHHHHHhhhhhccccCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 008902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (549)
Q Consensus 148 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (549)
+..+....... .+ ..+....++..++.|++.++..+....+..|.+|++. |
T Consensus 327 ~~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~ 377 (447)
T d1pw4a_ 327 LVTIATIVYWM----NP-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A 377 (447)
T ss_dssp HHHHHHHHTTS----CC-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H
T ss_pred HHHHHHHHHHh----cc-------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------H
Confidence 22222222111 01 0345666677778888888888889999999999887 9
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 008902 228 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (549)
Q Consensus 228 ~~~~~~~~~~~~l-g~~i~~~i~~~l~~~~gw~~~f~i~~~~~~~~~i~~~ 277 (549)
+++.++.+...++ |..++|.+.+++.+..||+..|++.+++.+++.++..
T Consensus 378 g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 9999998887777 4567899999999999999999877766666555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1.1e-11 Score=124.25 Aligned_cols=143 Identities=10% Similarity=0.033 Sum_probs=118.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCccccccccCCCC
Q 008902 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180 (549)
Q Consensus 101 ~~s~~~a~~~~~~~~~~~~~~~l~~G~laDr~~GR~~~i~i~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (549)
+.+....+.......++..++.++.+++.||+ ||++++.++.++..++.+++.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~------------------------ 309 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA------------------------ 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc------------------------
Confidence 33445556667777888889999999999997 99999999998888877776654
Q ss_pred CcchhhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhhhhchh
Q 008902 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWG 259 (549)
Q Consensus 181 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~-~~~~~lg~~i~~~i~~~l~~~~gw~ 259 (549)
.+...+++..++.|++.+...+...+++.|.+|++. |++.+++. .....+|..++|.+.|++.++.||+
T Consensus 310 ----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~ 379 (417)
T d1pv7a_ 310 ----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHH
T ss_pred ----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 355677777888899999999999999999999988 99999985 4567799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008902 260 SAFGALAIAMGISNMLFFI 278 (549)
Q Consensus 260 ~~f~i~~~~~~~~~i~~~~ 278 (549)
..|++.+++.++..++.++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 380 GAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9998877776666555444
|