Citrus Sinensis ID: 008904
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YT1 | 912 | Glutamate receptor 3.2 OS | yes | no | 0.989 | 0.595 | 0.611 | 0.0 | |
| Q7XJL2 | 921 | Glutamate receptor 3.1 OS | no | no | 0.923 | 0.550 | 0.636 | 0.0 | |
| Q84W41 | 903 | Glutamate receptor 3.6 OS | no | no | 0.945 | 0.574 | 0.513 | 1e-165 | |
| Q9C8E7 | 933 | Glutamate receptor 3.3 OS | no | no | 0.927 | 0.545 | 0.533 | 1e-164 | |
| Q7XP59 | 938 | Glutamate receptor 3.1 OS | yes | no | 0.956 | 0.559 | 0.497 | 1e-153 | |
| Q8GXJ4 | 959 | Glutamate receptor 3.4 OS | no | no | 0.916 | 0.524 | 0.510 | 1e-152 | |
| Q9SW97 | 953 | Glutamate receptor 3.5 OS | no | no | 0.939 | 0.541 | 0.479 | 1e-150 | |
| Q9SDQ4 | 921 | Glutamate receptor 3.7 OS | no | no | 0.914 | 0.545 | 0.402 | 1e-111 | |
| Q9SHV1 | 920 | Glutamate receptor 2.2 OS | no | no | 0.881 | 0.526 | 0.312 | 3e-64 | |
| Q9SHV2 | 895 | Glutamate receptor 2.3 OS | no | no | 0.817 | 0.501 | 0.325 | 5e-63 |
| >sp|Q93YT1|GLR32_ARATH Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/551 (61%), Positives = 445/551 (80%), Gaps = 8/551 (1%)
Query: 3 LWWLVSIFSFCI----GTAIQGA-LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSD 57
++W++ + SF + G +GA L+P ++VGAIFS GT+ G+V+ IAMKAA++D+NSD
Sbjct: 1 MFWVLVLLSFIVLIGDGMISEGAGLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDVNSD 60
Query: 58 PRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVP 117
P LGG KL IT +DAK NGFL+IMGALQFMETD +AI+GPQ+++MAHVLSHLANEL VP
Sbjct: 61 PSFLGGSKLRITTYDAKRNGFLTIMGALQFMETDAVAIIGPQTSIMAHVLSHLANELSVP 120
Query: 118 LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177
+LSFTALDP+LS LQ+PFFVQTAP+DL+LM AIAEM+SY+GW EVIA++NDDD RNG+T
Sbjct: 121 MLSFTALDPSLSALQFPFFVQTAPSDLFLMRAIAEMISYYGWSEVIALYNDDDNSRNGIT 180
Query: 178 ALGDKLAEIRCKISYKSALPPDQSVTE-TDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236
ALGD+L RCKISYK+ LP D +T ++ NELVK++ ME+RVI+V+ + +TG +F+
Sbjct: 181 ALGDELEGRRCKISYKAVLPLDVVITSPREIINELVKIQGMESRVIIVNTFPKTGKKIFE 240
Query: 237 VAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR 296
AQ+LGMM+ GYVWIATTWL++ +DS +PL KTA+S+ G LTLR HTP+SK+++DFV+R
Sbjct: 241 EAQKLGMMEKGYVWIATTWLTSLLDSVNPLPAKTAESLRGVLTLRIHTPNSKKKKDFVAR 300
Query: 297 WNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGL-GGGTLNLGA 355
WN LSNG++GLN YGLYAYDTVW+IARA+K LD ISFS+D KL + GGG+LNLGA
Sbjct: 301 WNKLSNGTVGLNVYGLYAYDTVWIIARAVKRLLDSRANISFSSDPKLTSMKGGGSLNLGA 360
Query: 356 LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415
LSIFD G +FL I+ TNMTG++G I F DRS++ PSYDIINV++ G+ +QIGYWSN+S
Sbjct: 361 LSIFDQGSQFLDYIVNTNMTGVTGQIQFLPDRSMIQPSYDIINVVDDGF-RQIGYWSNHS 419
Query: 416 GLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYR 475
GLS++PPE LY+K +NRSSSNQHL +V WPGG + PRGWVFPNNGR+LRIGVP+R S++
Sbjct: 420 GLSIIPPESLYKKLSNRSSSNQHLNNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFK 479
Query: 476 DFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSR 535
+FV +++G++ V GY IDVF AAV+L+ Y VP++F+ +GDG KNP ++E +N +T GV
Sbjct: 480 EFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVFD 539
Query: 536 ILTKKVAQLTR 546
+ +A +T+
Sbjct: 540 AVVGDIAIVTK 550
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Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Could play a role in calcium unloading from xylem. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XJL2|GLR31_ARATH Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/515 (63%), Positives = 406/515 (78%), Gaps = 8/515 (1%)
Query: 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82
+P V+ VGAIF T+ G+ + IA KAA++D+NSDP LGG KL I M+DAK +GFLSIM
Sbjct: 26 RPPVIKVGAIFGLNTMYGETANIAFKAAEEDVNSDPSFLGGSKLRILMNDAKRSGFLSIM 85
Query: 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPN 142
GALQFMETD +AI+GPQ+++MAHVLSHLANEL VP+LSFTALDPTLSPLQ+PFFVQTAP+
Sbjct: 86 GALQFMETDVVAIIGPQTSIMAHVLSHLANELTVPMLSFTALDPTLSPLQFPFFVQTAPS 145
Query: 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSV 202
DL+LM AIAEM++Y+GW +V+A++NDDD RNGVTALGD+L E RCKISYK+ LP D +
Sbjct: 146 DLFLMRAIAEMITYYGWSDVVALYNDDDNSRNGVTALGDELEERRCKISYKAVLPLDVVI 205
Query: 203 TE-TDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261
T ++ EL+K+R ME+RVIVV+ + TG M+F A+RLGMM+ GYVWIATTWLS+ +D
Sbjct: 206 TSPVEIIEELIKIRGMESRVIVVNTFPNTGKMIFKEAERLGMMEKGYVWIATTWLSSVLD 265
Query: 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRW-NTLSNG-SIGLNPYGLYAYDTVW 319
S PL K G LTLR HTPDS+++RDF +RW N LSN +IGLN YGLYAYDTVW
Sbjct: 266 SNLPLDTKLVN---GVLTLRLHTPDSRKKRDFAARWKNKLSNNKTIGLNVYGLYAYDTVW 322
Query: 320 MIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG 379
+IARA+K L+ G +SFSND KL L G LNL ALS FD G + L I+ T M+GL+G
Sbjct: 323 IIARAVKTLLEAGGNLSFSNDAKLGSLKGEALNLSALSRFDQGSQLLDYIVHTKMSGLTG 382
Query: 380 PIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHL 439
P+ F+ DRS+L PSYDIIN+++ QIGYWSNYSGLS+VPPE Y KP NRSSSNQHL
Sbjct: 383 PVQFHPDRSMLQPSYDIINLVDDRV-HQIGYWSNYSGLSIVPPESFYSKPPNRSSSNQHL 441
Query: 440 YSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNG-TDIVHGYCIDVFLAA 498
SV WPGG + PRGW+F NNGR+LRIGVP+R S++DFV +VNG ++ V GYCIDVF AA
Sbjct: 442 NSVTWPGGTSVTPRGWIFRNNGRRLRIGVPDRASFKDFVSRVNGSSNKVQGYCIDVFEAA 501
Query: 499 VRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV 533
V+LL Y VP++FI +GDG NP Y+EL+N++TTGV
Sbjct: 502 VKLLSYPVPHEFIFFGDGLTNPNYNELVNKVTTGV 536
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Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Required for the long-term calcium oscillation-regulated stomatal movements. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84W41|GLR36_ARATH Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 580 bits (1496), Expect = e-165, Method: Compositional matrix adjust.
Identities = 274/534 (51%), Positives = 390/534 (73%), Gaps = 15/534 (2%)
Query: 5 WLVSIFSFCIGTAIQGALK-----PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPR 59
W + + C +QG K P+V+N+G++F+F ++ G+V ++AM AA +D+N+ P
Sbjct: 3 WFLLMLIICNAVPLQGLTKIVSARPQVVNIGSVFTFNSLIGKVIKVAMDAAVEDVNASPS 62
Query: 60 VLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLL 119
+L L I MHD K+NGF+SIM LQFME++T+AI+GPQ + A V++H+A EL++P+L
Sbjct: 63 ILNTTTLRIIMHDTKYNGFMSIMEPLQFMESETVAIIGPQRSTTARVVAHVATELKIPIL 122
Query: 120 SFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179
SF+A DPT+SPLQ+PFF++T+ NDL+ M+AIA++V ++GW EV+AI+ DDD GRNGV AL
Sbjct: 123 SFSATDPTMSPLQFPFFIRTSQNDLFQMAAIADIVQFYGWREVVAIYGDDDYGRNGVAAL 182
Query: 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239
GD+L+E RC+ISYK+ALPP + T ++ + L+KV + E+R+IVVH GL +F+VA+
Sbjct: 183 GDRLSEKRCRISYKAALPP--APTRENITDLLIKVALSESRIIVVHASFIWGLELFNVAR 240
Query: 240 RLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT 299
LGMM +GYVWIAT WLST ID+ SPL L T +I G +TLR HTP+S +++FV RW+
Sbjct: 241 NLGMMSTGYVWIATNWLSTIIDTDSPLPLDTINNIQGVITLRLHTPNSIMKQNFVQRWHN 300
Query: 300 LSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIF 359
L++ +GL+ Y LYAYDTVW++A+A+ F +G +SFS + ++ LGGG L+L AL +F
Sbjct: 301 LTH--VGLSTYALYAYDTVWLLAQAIDDFFKKGGNVSFSKNPIISELGGGNLHLDALKVF 358
Query: 360 DGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSV 419
DGGK FL +ILQ + GL+G + F DR+L++P++D++NVI GY IGYW N+SGLSV
Sbjct: 359 DGGKIFLESILQVDRIGLTGRMKFTSDRNLVNPAFDVLNVIGTGY-TTIGYWFNHSGLSV 417
Query: 420 VPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVF 479
+P +++ N S S Q L+SVVWPG PRGWVF NNGR LRIGVPNR + + V
Sbjct: 418 MPADEM----ENTSFSGQKLHSVVWPGHSIKIPRGWVFSNNGRHLRIGVPNRYRFEE-VV 472
Query: 480 KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV 533
V ++ G+C+DVF+AA+ LLPYAVP++ + +G+GH NP+ SEL+ ITTGV
Sbjct: 473 SVKSNGMITGFCVDVFIAAINLLPYAVPFELVAFGNGHDNPSNSELVRLITTGV 526
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Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8E7|GLR33_ARATH Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 578 bits (1491), Expect = e-164, Method: Compositional matrix adjust.
Identities = 273/512 (53%), Positives = 371/512 (72%), Gaps = 3/512 (0%)
Query: 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82
KP+V+ +G+IFSF +V G+V++IA+ A D+NS+P +L G K S++M ++ +GF+ ++
Sbjct: 25 KPKVVKIGSIFSFDSVIGKVAKIAIDEAVKDVNSNPDILSGTKFSVSMQNSNCSGFMGMV 84
Query: 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPN 142
AL+FME D + I+GPQ +V+AH++SH+ANEL+VPLLSF DP +SPLQ+P+F++T +
Sbjct: 85 EALRFMEKDIVGIIGPQCSVVAHMISHMANELRVPLLSFAVTDPVMSPLQFPYFIRTTQS 144
Query: 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSV 202
DLY M AIA +V ++GW EVIA+F DDD GRNGV AL DKLA R +I+YK+ L PD +V
Sbjct: 145 DLYQMDAIASIVDFYGWKEVIAVFVDDDFGRNGVAALNDKLASRRLRITYKAGLHPDTAV 204
Query: 203 TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262
+ ++ N L+K+ +++ R++V+H YS G VF A+ LGMM +GYVWIAT WLST +DS
Sbjct: 205 NKNEIMNMLIKIMLLQPRIVVIHVYSELGFAVFKEAKYLGMMGNGYVWIATDWLSTNLDS 264
Query: 263 KSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIA 322
SPL + ++I G L LR HTPDS +R+F RW +S S+ LN YGLYAYD+V ++A
Sbjct: 265 SSPLPAERLETIQGVLVLRPHTPDSDFKREFFKRWRKMSGASLALNTYGLYAYDSVMLLA 324
Query: 323 RALKLFLDQGNTISFSNDTKLNGLG-GGTLNLGALSIFDGGKKFLANILQTNMTGLSGPI 381
R L F G ISFSN + LN LG G LNL A+++FDGG+ L +IL T M GL+G +
Sbjct: 325 RGLDKFFKDGGNISFSNHSMLNTLGKSGNLNLEAMTVFDGGEALLKDILGTRMVGLTGQL 384
Query: 382 HFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYS 441
F DRS P+YDIINV G +QIGYWSN+SGLS V PE LY K S++ L
Sbjct: 385 QFTPDRSRTRPAYDIINVAGTGV-RQIGYWSNHSGLSTVLPELLYTKEKPNMSTSPKLKH 443
Query: 442 VVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTD-IVHGYCIDVFLAAVR 500
V+WPG +KPRGWVF NNG++L+IGVP RVSY++FV ++ GT+ + G+CIDVF AAV
Sbjct: 444 VIWPGETFTKPRGWVFSNNGKELKIGVPLRVSYKEFVSQIRGTENMFKGFCIDVFTAAVN 503
Query: 501 LLPYAVPYKFIPYGDGHKNPTYSELINQITTG 532
LLPYAVP KFIPYG+G +NP+Y+ ++ ITTG
Sbjct: 504 LLPYAVPVKFIPYGNGKENPSYTHMVEMITTG 535
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Glutamate-gated receptor that probably acts as non-selective cation channel, at least in roots and hypocotyls. Can be triggered by Ala, Asn, Cys, Glu, Gly, Ser and glutathione (a tripeptide consisting of Glu-Gly-Cys). May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XP59|GLR31_ORYSJ Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 541 bits (1394), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/537 (49%), Positives = 375/537 (69%), Gaps = 12/537 (2%)
Query: 3 LWWLVSIFSFCIGTAIQG---ALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPR 59
+++L SIF C+ + Q + +P+ + +GA F+ + G+V+ +A+ AA +DIN+D
Sbjct: 4 IFYLFSIFC-CLCSCAQSQNISGRPDAVRIGAQFARNSTIGRVAAVAVLAAVNDINNDSN 62
Query: 60 VLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLL 119
+L G KL + MHD+ N FL I+ ALQFME DT+AI+GP S+ AHVLSHLANEL VPL+
Sbjct: 63 ILPGTKLDLHMHDSSCNRFLGIVQALQFMEKDTVAIIGPLSSTTAHVLSHLANELHVPLM 122
Query: 120 SFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179
SF+A DPTLS L+YPFFV+T +D + M+A+A++V Y+GW +V IF D+D GRN +++L
Sbjct: 123 SFSATDPTLSSLEYPFFVRTTVSDQFQMTAVADLVEYYGWKQVTTIFVDNDYGRNAISSL 182
Query: 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239
GD+L++ R KI YK+ P S E + + L+KV MME+RVI++H +GL+VF A
Sbjct: 183 GDELSKRRSKILYKAPFRPGASNNE--IADVLIKVAMMESRVIILHANPDSGLVVFQQAL 240
Query: 240 RLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT 299
+LGM+ +GY WIAT WL++++D L + ++ G LTLR HT +++R+ S+W+
Sbjct: 241 KLGMVSNGYAWIATDWLTSYLDPSVHLDIGLLSTMQGVLTLRHHTENTRRKSMLSSKWSE 300
Query: 300 LSNGSIG-----LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLG 354
L G L+ YGLYAYDTVWM+A AL F + G ISFS D KLN + G LNL
Sbjct: 301 LLKEDSGHSRFLLSTYGLYAYDTVWMLAHALDAFFNSGGNISFSPDPKLNEISGRGLNLE 360
Query: 355 ALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNY 414
ALS+FDGG+ L I Q + G +GP+ F+ +L+ P+YDI+++I G + +GYWSNY
Sbjct: 361 ALSVFDGGQLLLEKIHQVDFLGATGPVKFDSGGNLIQPAYDIVSIIGSGL-RTVGYWSNY 419
Query: 415 SGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSY 474
SGLSV+ PE LY+KPANR+ Q L+ V+WPG +KPRGWVFPNNG +++IGVP+RVSY
Sbjct: 420 SGLSVISPETLYKKPANRTRETQKLHDVIWPGETINKPRGWVFPNNGNEIKIGVPDRVSY 479
Query: 475 RDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITT 531
R FV + T +V G CIDVF+AA+ LL Y VPY+F+P+G+ +NP+YSELIN+I T
Sbjct: 480 RQFVSVDSETGMVRGLCIDVFVAAINLLAYPVPYRFVPFGNNRENPSYSELINKIIT 536
|
Glutamate-gated receptor that probably acts as non-selective cation channel. Involved in root development. May regulate cell proliferation and cell death in the root apex. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GXJ4|GLR34_ARATH Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 538 bits (1385), Expect = e-152, Method: Compositional matrix adjust.
Identities = 259/507 (51%), Positives = 356/507 (70%), Gaps = 4/507 (0%)
Query: 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82
+P +NVGA+F++ + G+ ++ A+KAA DD+N+D VL G KL+I D+ +GF+ M
Sbjct: 57 RPSSVNVGALFTYDSFIGRAAKPAVKAAMDDVNADQSVLKGIKLNIIFQDSNCSGFIGTM 116
Query: 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPN 142
GALQ ME +A +GPQS+ +AH++S++ANEL VPLLSF A DPTLS LQ+P+F++T N
Sbjct: 117 GALQLMENKVVAAIGPQSSGIAHMISYVANELHVPLLSFGATDPTLSSLQFPYFLRTTQN 176
Query: 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSV 202
D + M AIA+ +SY GW +VIAIF DD+ GRNG++ LGD LA+ R +ISYK+A+ P
Sbjct: 177 DYFQMHAIADFLSYSGWRQVIAIFVDDECGRNGISVLGDVLAKKRSRISYKAAITP--GA 234
Query: 203 TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262
+ +R+ LV V +ME+RV VVH +GL VF VA+ LGMM SGYVWIAT WL T +DS
Sbjct: 235 DSSSIRDLLVSVNLMESRVFVVHVNPDSGLNVFSVAKSLGMMASGYVWIATDWLPTAMDS 294
Query: 263 KSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIA 322
+ T + G + R +T +S +R F++RW L G N Y +YAYD+VW++A
Sbjct: 295 MEHVDSDTMDLLQGVVAFRHYTIESSVKRQFMARWKNLRPND-GFNSYAMYAYDSVWLVA 353
Query: 323 RALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIH 382
RAL +F + N I+FSND L+ G T+ L ALS+F+ G+KF+ IL N TG++GPI
Sbjct: 354 RALDVFFRENNNITFSNDPNLHKTNGSTIQLSALSVFNEGEKFMKIILGMNHTGVTGPIQ 413
Query: 383 FNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSV 442
F+ DR+ ++P+Y+++N +E P+ +GYWSN+SGLSVV PE LY +P N S++NQ L +
Sbjct: 414 FDSDRNRVNPAYEVLN-LEGTAPRTVGYWSNHSGLSVVHPETLYSRPPNTSTANQRLKGI 472
Query: 443 VWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL 502
++PG VT PRGWVFPNNG+ LRIGVPNRVSY D+V K V GYCIDVF AA+ LL
Sbjct: 473 IYPGEVTKPPRGWVFPNNGKPLRIGVPNRVSYTDYVSKDKNPPGVRGYCIDVFEAAIELL 532
Query: 503 PYAVPYKFIPYGDGHKNPTYSELINQI 529
PY VP +I YGDG +NP+Y L+N++
Sbjct: 533 PYPVPRTYILYGDGKRNPSYDNLVNEV 559
|
Glutamate-gated receptor that probably acts as non-selective cation channel, at least in hypocotyls. Can be triggered by Ala, Asn, Gly, Ser and, to a lower extent, Cys and Glu. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Play an important role in the calcium-based fast transmission of environmental stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SW97|GLR35_ARATH Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 530 bits (1366), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/524 (47%), Positives = 347/524 (66%), Gaps = 8/524 (1%)
Query: 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ 86
+NVGA+F++ + G+ +++A AA +DIN+D +L G KL+I D +GF+ MGALQ
Sbjct: 48 VNVGALFTYDSFIGRAAKLAFVAAIEDINADQSILRGTKLNIVFQDTNCSGFVGTMGALQ 107
Query: 87 FMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYL 146
ME +A +GPQS+ + H++SH+ANEL VP LSF A DPTLS LQYP+F++T ND +
Sbjct: 108 LMENKVVAAIGPQSSGIGHIISHVANELHVPFLSFAATDPTLSSLQYPYFLRTTQNDYFQ 167
Query: 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETD 206
M+AI + VSYF W EV+AIF DD+ GRNG++ LGD LA+ R KISYK+A PP +
Sbjct: 168 MNAITDFVSYFRWREVVAIFVDDEYGRNGISVLGDALAKKRAKISYKAAFPP--GADNSS 225
Query: 207 VRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPL 266
+ + L V +ME+R+ VVH +GL +F VA+ LGMM SGYVWI T WL T +DS PL
Sbjct: 226 ISDLLASVNLMESRIFVVHVNPDSGLNIFSVAKSLGMMGSGYVWITTDWLLTALDSMEPL 285
Query: 267 SLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLS-----NGSIGLNPYGLYAYDTVWMI 321
+ + G + R +TP+S +R F RW L G N Y LYAYD+VW++
Sbjct: 286 DPRALDLLQGVVAFRHYTPESDNKRQFKGRWKNLRFKESLKSDDGFNSYALYAYDSVWLV 345
Query: 322 ARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPI 381
ARAL +F QGNT++FSND L + L L IF+ G++FL IL+ N TGL+G I
Sbjct: 346 ARALDVFFSQGNTVTFSNDPSLRNTNDSGIKLSKLHIFNEGERFLQVILEMNYTGLTGQI 405
Query: 382 HFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYS 441
FN +++ ++P+YDI+N+ G P ++GYWSN++G SV PPE LY KP+N S+ +Q L
Sbjct: 406 EFNSEKNRINPAYDILNIKSTG-PLRVGYWSNHTGFSVAPPETLYSKPSNTSAKDQRLNE 464
Query: 442 VVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRL 501
++WPG V PRGWVFP NG+ L+IGVPNRVSY+++ K V G+CID+F AA++L
Sbjct: 465 IIWPGEVIKPPRGWVFPENGKPLKIGVPNRVSYKNYASKDKNPLGVKGFCIDIFEAAIQL 524
Query: 502 LPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVAQLT 545
LPY VP +I YGDG KNP+Y LI+++ + + V +T
Sbjct: 525 LPYPVPRTYILYGDGKKNPSYDNLISEVAANIFDVAVGDVTIIT 568
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SDQ4|GLR37_ARATH Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/512 (40%), Positives = 320/512 (62%), Gaps = 10/512 (1%)
Query: 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82
+P+++N+GA+F+F +V G+ +++A++AA D+N+D L +L + M D+ N F
Sbjct: 27 RPQLVNIGAVFAFDSVIGRAAKVALEAAVSDVNNDKSFLKETELRLLMEDSACNVFRGSF 86
Query: 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPN 142
GA + +E + +A++GP S+ +AH +S +A L PL+SF A DPTLS LQ+PFF++T PN
Sbjct: 87 GAFELLEKEVVAMIGPISSSVAHTISDIAKGLHFPLVSFAATDPTLSALQFPFFLRTTPN 146
Query: 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSV 202
D + MSA+ ++++++GW EVI++++DD+ GRNGV+AL D+L + R +ISYK +P
Sbjct: 147 DAHQMSALVDLINFYGWKEVISVYSDDELGRNGVSALDDELYKKRSRISYK--VPLSVHS 204
Query: 203 TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262
E + N L K + + RV ++H L +FD+AQ+L MM YVW+AT WLS +DS
Sbjct: 205 DEKFLTNALNKSKSIGPRVYILHFGPDPLLRIFDIAQKLQMMTHEYVWLATDWLSVTLDS 264
Query: 263 KSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIA 322
S T K + G + LRQH P+S + F + SN S +N Y L+AYDTVWMIA
Sbjct: 265 LS--DKGTLKRLEGVVGLRQHIPESVKMEHFTHKLQ--SNRS--MNAYALHAYDTVWMIA 318
Query: 323 RALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIH 382
++ L++G I+FS KL G L+L + F+ G+ L +L+ N TG++G +
Sbjct: 319 HGIEELLNEGINITFSYSEKLLHARGTKLHLEKIKFFNSGELLLEKLLKVNFTGIAGQVQ 378
Query: 383 FNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSV 442
F R+++ Y+IINV + +G+WS G SVV P+ + + S++ L +
Sbjct: 379 FGSGRNVIGCDYEIINVNKTDV-HTVGFWSKNGGFSVVAPKTRHSQKKTSFVSDEKLGDI 437
Query: 443 VWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKV-NGTDIVHGYCIDVFLAAVRL 501
WPGG KPRGWV ++ L+I VP RVS+ +FV + N + + G+CIDVF+ A++
Sbjct: 438 TWPGGGREKPRGWVIADSADPLKIVVPRRVSFVEFVTEEKNSSHRIQGFCIDVFIEALKF 497
Query: 502 LPYAVPYKFIPYGDGHKNPTYSELINQITTGV 533
+PY+VPY F P+G+GH +P Y+ LI +T GV
Sbjct: 498 VPYSVPYIFEPFGNGHSSPNYNHLIQMVTDGV 529
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 162/519 (31%), Positives = 271/519 (52%), Gaps = 35/519 (6%)
Query: 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ 86
+N+G + GT V+ + + + D S R +L + + D+K + + A+
Sbjct: 32 VNIGVVSDVGTSYPDVAMLCINMSLADFYSS-RPQFQTRLVVNVGDSKNDVVGAATAAID 90
Query: 87 FMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLY 145
++ + AI+GP +++ AH L + + +VP++S++A P+L+ L+ P+F + D
Sbjct: 91 LIKNKQVKAILGPWTSMQAHFLIEIGQKSRVPVVSYSATSPSLTSLRSPYFFRATYEDSS 150
Query: 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTET 205
+ AI ++ FGW EV+ ++ D+ G + L D L +I +I Y+S +P + T+
Sbjct: 151 QVHAIKAIIKLFGWREVVPVYIDNTFGEGIMPRLTDSLQDINVRIPYRSVIP--LNATDQ 208
Query: 206 DVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSP 265
D+ EL+K+ M RV +VH S VF A+ LG+M GYVWI T + + S +
Sbjct: 209 DISVELLKMMNMPTRVFIVHMSSSLASTVFIKAKELGLMKPGYVWILTNGVMDGLRSINE 268
Query: 266 LSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARAL 325
++ + +LG ++ + P SK F SRW + LN YGL+AYD +A A+
Sbjct: 269 TGIEAMEGVLG---IKTYIPKSKDLETFRSRWKR-RFPQMELNVYGLWAYDATTALAMAI 324
Query: 326 KLFLDQG-NTISFSN-DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHF 383
+ D G N ++FSN DT G L L + G K L + GL+G HF
Sbjct: 325 E---DAGINNMTFSNVDT-----GKNVSELDGLGLSQFGPKLLQTVSTVQFKGLAGDFHF 376
Query: 384 NQDRSLLHPS-YDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKP---ANRSSSNQHL 439
+ L PS ++I+N+I G + IG+W+ +GL +KL ++P S+ HL
Sbjct: 377 VSGQ--LQPSVFEIVNMIGTG-ERSIGFWTEGNGLV----KKLDQEPRSIGTLSTWPDHL 429
Query: 440 YSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVF----KVNGTDIVHGYCIDVF 495
++WPG S P+GW P NG++LRIGVP R+ + D V + + +V G+CID F
Sbjct: 430 KHIIWPGEAVSVPKGWEIPTNGKKLRIGVPKRIGFTDLVKVTRDPITNSTVVKGFCIDFF 489
Query: 496 LAAVRLLPYAVPYKFIPYGDGHKNPT--YSELINQITTG 532
A ++ +PY V Y+F P+ + P +++L++Q+ G
Sbjct: 490 EAVIQAMPYDVSYEFFPFEKPNGEPAGNHNDLVHQVYLG 528
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHV2|GLR23_ARATH Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (618), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 156/480 (32%), Positives = 256/480 (53%), Gaps = 31/480 (6%)
Query: 65 KLSITMHDAKFNGFLSIMGALQFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFTA 123
+L + + D+K + + + AL ++ + AI+GP +++ AH L + + +VP++S++A
Sbjct: 68 RLVVNVGDSKSDVVGAAIAALDLIKNKQVKAILGPWTSMQAHFLIEIGQKSRVPIVSYSA 127
Query: 124 LDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183
P L+ L+ P+F++ D + + I ++ FGW EV+ ++ D+ G + L D L
Sbjct: 128 TSPILTSLRSPYFLRATYEDSFQVQPIKAIIKLFGWREVVPVYIDNTFGEGIMPRLTDAL 187
Query: 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243
+I +I Y+S + + T+ ++ EL+K+ M RV +VH Y F A+ LG+
Sbjct: 188 QDINVRIPYRSVIAIN--ATDHEISVELLKMMNMPTRVFLVHMYYDLASRFFIKAKELGL 245
Query: 244 MDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG 303
M+ GYVWI T + ID S ++ +++ G L ++ + P S F SRW +L
Sbjct: 246 MEPGYVWILTNGV---IDDLSLINETAVEAMEGVLGIKTYIPKSPDLEKFRSRWRSLF-P 301
Query: 304 SIGLNPYGLYAYDTVWMIARALKLFLDQG-NTISFSNDTKLNGLGGGTLNLGALSIFDGG 362
+ L+ YGL+AYD +A A++ + G N ++FS K+ G L AL + G
Sbjct: 302 RVELSVYGLWAYDATTALAVAIE---EAGTNNMTFS---KVVDTGRNVSELEALGLSQFG 355
Query: 363 KKFLANILQTNMTGLSGPIHFNQDRSLLHPS-YDIINVIEHGYPQQIGYWSNYSGLSVVP 421
K L +L GL+G F R L PS ++I+N+I G + IG+W +GL
Sbjct: 356 PKLLQTLLTVQFRGLAGEFRFF--RGQLQPSVFEIVNIINTG-EKSIGFWKEGNGLV--- 409
Query: 422 PEKLYRKPAN---RSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFV 478
+KL ++ ++ S+ HL +VWPG S P+GW P G++LRIGVP R Y D V
Sbjct: 410 -KKLDQQASSISALSTWKDHLKHIVWPGEADSVPKGWQIPTKGKKLRIGVPKRTGYTDLV 468
Query: 479 F----KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--DGHKNPTYSELINQITTG 532
+ + +V G+CID F A +R LPY V Y+FIP+ DG Y++L+ Q+ G
Sbjct: 469 KVTRDPITNSTVVTGFCIDFFEAVIRELPYDVSYEFIPFEKPDGKTAGNYNDLVYQVYLG 528
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| 255559169 | 924 | glutamate receptor 3 plant, putative [Ri | 0.967 | 0.574 | 0.772 | 0.0 | |
| 224104813 | 900 | glutamate-gated kainate-type ion channel | 0.989 | 0.603 | 0.716 | 0.0 | |
| 297744471 | 1147 | unnamed protein product [Vitis vinifera] | 0.963 | 0.461 | 0.672 | 0.0 | |
| 225428314 | 917 | PREDICTED: glutamate receptor 3.2 [Vitis | 0.941 | 0.563 | 0.697 | 0.0 | |
| 356553421 | 915 | PREDICTED: glutamate receptor 3.2-like [ | 0.925 | 0.555 | 0.662 | 0.0 | |
| 297802426 | 913 | hypothetical protein ARALYDRAFT_491120 [ | 0.989 | 0.594 | 0.614 | 0.0 | |
| 13160471 | 912 | putative glutamate receptor like-protein | 0.989 | 0.595 | 0.611 | 0.0 | |
| 18418637 | 912 | glutamate receptor 3.2 [Arabidopsis thal | 0.989 | 0.595 | 0.611 | 0.0 | |
| 16604667 | 912 | unknown protein [Arabidopsis thaliana] | 0.989 | 0.595 | 0.609 | 0.0 | |
| 3080421 | 925 | putative protein [Arabidopsis thaliana] | 0.954 | 0.566 | 0.632 | 0.0 |
| >gi|255559169|ref|XP_002520606.1| glutamate receptor 3 plant, putative [Ricinus communis] gi|223540205|gb|EEF41779.1| glutamate receptor 3 plant, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/533 (77%), Positives = 471/533 (88%), Gaps = 2/533 (0%)
Query: 1 MNLWWLVSIFSFCIGTAIQGALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRV 60
MN WLVS F CI + GA P V+NVGAIF+F T+NG+V+RIAMKAA+DDINSDP +
Sbjct: 1 MNRVWLVS-FLVCISSLSHGAPNPGVINVGAIFTFNTINGKVARIAMKAAEDDINSDPSI 59
Query: 61 LGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120
LGG K S TMHD+ F+GFL I+GALQFMETDT+AI+GPQ+AVMAHVLSHLANEL VPLLS
Sbjct: 60 LGGWKFSTTMHDSNFSGFLGIIGALQFMETDTVAILGPQNAVMAHVLSHLANELHVPLLS 119
Query: 121 FTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180
FTALDPTLSPLQYP+FVQTAPNDL+ M+AIAEMVSY+GW EVIA+++DDDQ RNGVTALG
Sbjct: 120 FTALDPTLSPLQYPYFVQTAPNDLFQMTAIAEMVSYYGWAEVIAVYSDDDQSRNGVTALG 179
Query: 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQR 240
DKLAE RC+ISYK+ALPPD + +DV++ELVK+ ME+RVIV+H +SRTGL+VFDVAQ
Sbjct: 180 DKLAERRCRISYKAALPPDPTANRSDVQDELVKILRMESRVIVLHTFSRTGLLVFDVAQS 239
Query: 241 LGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL 300
LGMM+ G+VWIATTWLST +DS SPL KTA SI G +T R HTPDSKR+RDF SRWN L
Sbjct: 240 LGMMEKGFVWIATTWLSTVLDSNSPLPSKTANSIQGVITFRPHTPDSKRKRDFESRWNKL 299
Query: 301 SNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFD 360
SNGSIGLNPY LYAYDTVWMIA A+KLF DQGNTISFSND+KL+GLGGGTLNLGALSIFD
Sbjct: 300 SNGSIGLNPYALYAYDTVWMIAHAMKLFFDQGNTISFSNDSKLSGLGGGTLNLGALSIFD 359
Query: 361 GGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVV 420
GG K L NIL TNMTGL+GPI FN DRSLLHPSY+I+NVIE GY QQIGYWSNYSGLSVV
Sbjct: 360 GGSKLLKNILLTNMTGLTGPIRFNPDRSLLHPSYEIVNVIETGY-QQIGYWSNYSGLSVV 418
Query: 421 PPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFK 480
PPE LY KPANRSSS+Q L+SV+WPGGV+++PRGWVFP+NGR+LRIG+PNRVSYRDFV K
Sbjct: 419 PPETLYGKPANRSSSSQRLFSVLWPGGVSARPRGWVFPDNGRRLRIGIPNRVSYRDFVSK 478
Query: 481 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV 533
+NGTD V GYCIDVFLAA++LLPYAVPYKFIP+GDGHKNP+YSEL+N+IT GV
Sbjct: 479 INGTDEVQGYCIDVFLAAIKLLPYAVPYKFIPFGDGHKNPSYSELVNRITVGV 531
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104813|ref|XP_002313575.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222849983|gb|EEE87530.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/546 (71%), Positives = 471/546 (86%), Gaps = 3/546 (0%)
Query: 1 MNLWWLVSIFSFCIGTAIQGALKPE-VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPR 59
MNL WL+S + C + QGAL P +NVGAIF+F ++NG+V++IAM+AA+DDINSDP
Sbjct: 1 MNLAWLLSFWILCTSSFSQGALSPGGTVNVGAIFTFSSINGRVAKIAMEAAEDDINSDPS 60
Query: 60 VLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLL 119
+LGGRKLSI MHD+ F+GFL I+GALQF+ETDT+A++GPQ+AVMAHVLSHLANELQVP L
Sbjct: 61 LLGGRKLSINMHDSNFSGFLGIIGALQFLETDTVAVIGPQTAVMAHVLSHLANELQVPFL 120
Query: 120 SFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179
SFTALDPTLSPLQ+P+F+QTAPNDL+ M+AIA++VSY+GW EV A+FNDDDQ RNG+T L
Sbjct: 121 SFTALDPTLSPLQFPYFIQTAPNDLFQMTAIADIVSYYGWSEVTAVFNDDDQNRNGITVL 180
Query: 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239
GDKLAE RCKISYK+ALPP+ T +D+++EL K+ ME+RVIV++ +S+TGL+VFDVA+
Sbjct: 181 GDKLAERRCKISYKAALPPEPKATRSDIQDELAKILGMESRVIVLNTFSKTGLLVFDVAK 240
Query: 240 RLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT 299
LGMM++G+VWI T+WLST IDS SPL TA SI G L LR HTPDSKR+ DF+SRWN
Sbjct: 241 ALGMMENGFVWIVTSWLSTVIDSASPLP-TTANSIQGVLALRPHTPDSKRKGDFMSRWNQ 299
Query: 300 LSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIF 359
LSNGSIGLNPYGLYAYDTVW++ARALK F DQGNTISF+ND++L G+GGG LNLGALSIF
Sbjct: 300 LSNGSIGLNPYGLYAYDTVWLLARALKSFFDQGNTISFTNDSRLGGIGGGYLNLGALSIF 359
Query: 360 DGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSV 419
DGG + L NILQT+MTGL+GP FN DRS+LHPSYDIINV+E GY QQ+GYWSNYSGLSV
Sbjct: 360 DGGSQLLKNILQTSMTGLTGPFRFNPDRSILHPSYDIINVLETGY-QQVGYWSNYSGLSV 418
Query: 420 VPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVF 479
VPPE LY K ANRSSS+QHL SVVWPGG T++PRGWVFPNNG++L+IG+PNRVSYRDFV
Sbjct: 419 VPPETLYGKAANRSSSSQHLQSVVWPGGTTARPRGWVFPNNGKELQIGIPNRVSYRDFVS 478
Query: 480 KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539
KVNGTD+V GYCIDVFLAA++LLPYAVP+KFIP+GDGHKNPTY +L+ +ITT V +
Sbjct: 479 KVNGTDMVQGYCIDVFLAAIKLLPYAVPHKFIPFGDGHKNPTYYDLVYKITTRVFDAVIG 538
Query: 540 KVAQLT 545
VA +T
Sbjct: 539 DVAIVT 544
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744471|emb|CBI37733.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/544 (67%), Positives = 442/544 (81%), Gaps = 15/544 (2%)
Query: 1 MNLWWLVSIFSF-------------CIGTAIQGALKPEVLNVGAIFSFGTVNGQVSRIAM 47
+ +WWL + F CI +G L PEV+N+GAIF+F T+NG+V++IAM
Sbjct: 218 LEIWWLGTSFRITMNLVWLVLLLILCIRGYTEGVLNPEVVNIGAIFTFSTINGKVAKIAM 277
Query: 48 KAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107
KAA+ D+NSDP +LGGRKL+IT+HD+ ++GFLSI+GALQFME+DT+AI+GPQSAVMAHVL
Sbjct: 278 KAAEQDVNSDPSILGGRKLAITLHDSNYSGFLSIVGALQFMESDTVAIIGPQSAVMAHVL 337
Query: 108 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 167
SHLANEL VPLLSFTALDP LSPLQ+P+F+QTAP+DL+ M+AIA+MVSYF W EVIA+++
Sbjct: 338 SHLANELHVPLLSFTALDPALSPLQFPYFIQTAPSDLFQMTAIADMVSYFEWREVIAVYS 397
Query: 168 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227
DDDQ RNG+T LGDKLAE +CKISYK+ALPPD T V NELVKVRMME+RVIV+H
Sbjct: 398 DDDQSRNGITTLGDKLAERQCKISYKAALPPDPKATRDQVFNELVKVRMMESRVIVLHTL 457
Query: 228 SRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDS 287
S+TGL+VFDVA+ LGMM+SGYVWIA+TWLST +DS +PLS KTA SI G LTLR HTPDS
Sbjct: 458 SKTGLLVFDVAKYLGMMESGYVWIASTWLSTILDS-TPLSSKTADSIQGVLTLRPHTPDS 516
Query: 288 KRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLG 347
K++R+F SRWN LSNG+IGLNPYGLYAYDTVWMI ALK F DQG TISFSN T L
Sbjct: 517 KKKREFSSRWNHLSNGTIGLNPYGLYAYDTVWMITYALKTFFDQGGTISFSNITSGTALV 576
Query: 348 GGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQ 407
G LNLGALSIFDGG++ L NILQ N TGL+GP+ F DRS +HP+Y++INV+ G+ +Q
Sbjct: 577 AGELNLGALSIFDGGQQLLKNILQINRTGLTGPLRFGPDRSPVHPAYEVINVVGTGF-RQ 635
Query: 408 IGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIG 467
+GYWS+YSGLSV P+ LY KP NRS SNQ LY V+WPG +T KPRGWVFPNNGR LRIG
Sbjct: 636 LGYWSDYSGLSVASPDTLYAKPPNRSRSNQQLYDVLWPGEITKKPRGWVFPNNGRHLRIG 695
Query: 468 VPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELIN 527
VPNRVSYRDFV K TD +HGYCIDVF AA+ LLPYAVPYKF+ +GDG +NP Y++L+
Sbjct: 696 VPNRVSYRDFVSKGKDTDDLHGYCIDVFTAAIALLPYAVPYKFVLFGDGLENPNYNQLVY 755
Query: 528 QITT 531
++ +
Sbjct: 756 KVAS 759
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428314|ref|XP_002279899.1| PREDICTED: glutamate receptor 3.2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/519 (69%), Positives = 435/519 (83%), Gaps = 2/519 (0%)
Query: 13 CIGTAIQGALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD 72
CI +G L PEV+N+GAIF+F T+NG+V++IAMKAA+ D+NSDP +LGGRKL+IT+HD
Sbjct: 13 CIRGYTEGVLNPEVVNIGAIFTFSTINGKVAKIAMKAAEQDVNSDPSILGGRKLAITLHD 72
Query: 73 AKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ 132
+ ++GFLSI+GALQFME+DT+AI+GPQSAVMAHVLSHLANEL VPLLSFTALDP LSPLQ
Sbjct: 73 SNYSGFLSIVGALQFMESDTVAIIGPQSAVMAHVLSHLANELHVPLLSFTALDPALSPLQ 132
Query: 133 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 192
+P+F+QTAP+DL+ M+AIA+MVSYF W EVIA+++DDDQ RNG+T LGDKLAE +CKISY
Sbjct: 133 FPYFIQTAPSDLFQMTAIADMVSYFEWREVIAVYSDDDQSRNGITTLGDKLAERQCKISY 192
Query: 193 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252
K+ALPPD T V NELVKVRMME+RVIV+H S+TGL+VFDVA+ LGMM+SGYVWIA
Sbjct: 193 KAALPPDPKATRDQVFNELVKVRMMESRVIVLHTLSKTGLLVFDVAKYLGMMESGYVWIA 252
Query: 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGL 312
+TWLST +DS +PLS KTA SI G LTLR HTPDSK++R+F SRWN LSNG+IGLNPYGL
Sbjct: 253 STWLSTILDS-TPLSSKTADSIQGVLTLRPHTPDSKKKREFSSRWNHLSNGTIGLNPYGL 311
Query: 313 YAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT 372
YAYDTVWMI ALK F DQG TISFSN T L G LNLGALSIFDGG++ L NILQ
Sbjct: 312 YAYDTVWMITYALKTFFDQGGTISFSNITSGTALVAGELNLGALSIFDGGQQLLKNILQI 371
Query: 373 NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANR 432
N TGL+GP+ F DRS +HP+Y++INV+ G+ +Q+GYWS+YSGLSV P+ LY KP NR
Sbjct: 372 NRTGLTGPLRFGPDRSPVHPAYEVINVVGTGF-RQLGYWSDYSGLSVASPDTLYAKPPNR 430
Query: 433 SSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCI 492
S SNQ LY V+WPG +T KPRGWVFPNNGR LRIGVPNRVSYRDFV K TD +HGYCI
Sbjct: 431 SRSNQQLYDVLWPGEITKKPRGWVFPNNGRHLRIGVPNRVSYRDFVSKGKDTDDLHGYCI 490
Query: 493 DVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITT 531
DVF AA+ LLPYAVPYKF+ +GDG +NP Y++L+ ++ +
Sbjct: 491 DVFTAAIALLPYAVPYKFVLFGDGLENPNYNQLVYKVAS 529
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553421|ref|XP_003545055.1| PREDICTED: glutamate receptor 3.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/509 (66%), Positives = 427/509 (83%), Gaps = 1/509 (0%)
Query: 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGA 84
+V+ +GAIF+ T+NG+VS+IA++AA+ D+NSDPR+LGGRKLSIT+HD+ F+GFL +GA
Sbjct: 29 DVVKIGAIFTLKTINGRVSKIAIQAAEKDVNSDPRILGGRKLSITIHDSNFSGFLGFIGA 88
Query: 85 LQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDL 144
L+F+ TDT+AI+GPQS+VMAHVLSHLANEL VPLLS TALDPTL+PLQYP+F+QTAP+D
Sbjct: 89 LKFLVTDTVAIIGPQSSVMAHVLSHLANELHVPLLSSTALDPTLTPLQYPYFLQTAPSDH 148
Query: 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTE 204
+ M+A+A+++SYFGW EVIA+F+DDDQ RNG+T LGDKLAE RCK+SYK+ALPPD + T
Sbjct: 149 FHMNAVADLISYFGWREVIAVFSDDDQSRNGITVLGDKLAERRCKLSYKAALPPDPTATP 208
Query: 205 TDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKS 264
+ V +LVK++ ME+RVIV++ +++TGL+VF+VAQ+LGMM GYVWIAT WLST +DS +
Sbjct: 209 SHVTGQLVKIKSMESRVIVLNTFAQTGLLVFEVAQKLGMMSKGYVWIATAWLSTVLDSTT 268
Query: 265 PLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARA 324
L T SI G +T R HTP S++++ F+SRW +SNGSIGLNPYGLYAYD+VWMIA A
Sbjct: 269 SLPSNTCNSIQGVITFRPHTPHSRKKQAFISRWKHISNGSIGLNPYGLYAYDSVWMIAEA 328
Query: 325 LKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFN 384
LKLF D+ TISFSN+T L+G TL+ GALS+FDGGK+ L NIL+ NMTGL+GPI F
Sbjct: 329 LKLFFDRNGTISFSNNTNLSGTREETLDFGALSVFDGGKELLDNILRINMTGLTGPIQFG 388
Query: 385 QDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVW 444
DRS L+PSYDI+NVI GY +++GYWSNYSGLSV+ PEKL+ +PANRS S+QHL V+W
Sbjct: 389 SDRSPLNPSYDILNVIATGY-RRVGYWSNYSGLSVITPEKLHAEPANRSISSQHLNRVIW 447
Query: 445 PGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPY 504
PG T KPRGWVFPNNGRQLRIG+PNRVSY+D V ++NGT+ V GYCID+FLAA++LLPY
Sbjct: 448 PGNTTEKPRGWVFPNNGRQLRIGIPNRVSYQDMVSQINGTNAVQGYCIDIFLAAIKLLPY 507
Query: 505 AVPYKFIPYGDGHKNPTYSELINQITTGV 533
AV YKFI +GDGH NP+Y L+N IT+ V
Sbjct: 508 AVQYKFILFGDGHNNPSYYNLVNMITSDV 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802426|ref|XP_002869097.1| hypothetical protein ARALYDRAFT_491120 [Arabidopsis lyrata subsp. lyrata] gi|297314933|gb|EFH45356.1| hypothetical protein ARALYDRAFT_491120 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/550 (61%), Positives = 445/550 (80%), Gaps = 7/550 (1%)
Query: 3 LWWLVSIFSFCI----GTAIQGALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDP 58
++W++ + SF + G +GA +P ++VGAIFS GT++G+V+ IAMKAA+DD+NSDP
Sbjct: 1 MFWVLVLLSFIVLLGDGMISEGASRPRYVDVGAIFSLGTLHGEVTNIAMKAAEDDVNSDP 60
Query: 59 RVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPL 118
LGG KL I +DAK NGFL+IMGALQFMETD +AI+GPQ+++MAHVLSHLANEL VP+
Sbjct: 61 LFLGGSKLRIMTYDAKRNGFLTIMGALQFMETDAVAIIGPQTSIMAHVLSHLANELSVPM 120
Query: 119 LSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178
LSFTALDP+LS LQ+PFFVQTAP+DL+LM AIAEM+SY+GW EV+A++NDDD RNG+TA
Sbjct: 121 LSFTALDPSLSALQFPFFVQTAPSDLFLMRAIAEMISYYGWSEVVALYNDDDNSRNGITA 180
Query: 179 LGDKLAEIRCKISYKSALPPDQSVTE-TDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 237
LGD+L RCKISYK+ LP D +T ++ +ELVK++ ME+RVI+V+ + RTG M+F+
Sbjct: 181 LGDELEGRRCKISYKAVLPLDVVITSPREIIDELVKIQGMESRVIIVNTFPRTGGMIFEE 240
Query: 238 AQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRW 297
AQ+LGMM+ GYVWIATTWL++ +DS +PL K A+S G LTLR HTP+S++++DFV+RW
Sbjct: 241 AQKLGMMEKGYVWIATTWLTSLLDSVNPLPSKNAESFRGVLTLRIHTPNSRKKKDFVARW 300
Query: 298 NTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGL-GGGTLNLGAL 356
N LSNG++GLN YGLYAYDTVW+IARA+K LD G ISFS+D KL + GGG+LNLGAL
Sbjct: 301 NKLSNGTVGLNVYGLYAYDTVWIIARAVKTLLDSGANISFSSDPKLTTMTGGGSLNLGAL 360
Query: 357 SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSG 416
SIFD G +FL I+ TNMTGL+G I F DRS++ PSYDIINV++ G+ +QIGYWSN+SG
Sbjct: 361 SIFDQGSQFLDYIVNTNMTGLTGQIQFLPDRSMIQPSYDIINVVDDGF-RQIGYWSNHSG 419
Query: 417 LSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRD 476
LS++PPE LY KP+NRSSSNQHL +V WPGG + PRGWVFPNNGR+LRIGVP+R S+++
Sbjct: 420 LSIIPPESLYNKPSNRSSSNQHLNNVTWPGGTSVTPRGWVFPNNGRRLRIGVPDRASFKE 479
Query: 477 FVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRI 536
FV +V+G++ V GY IDVF AAV+L+ Y VP++F+ +GDG KNP ++E +N +TTG+
Sbjct: 480 FVSRVDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTTGLFDA 539
Query: 537 LTKKVAQLTR 546
+ +A +T+
Sbjct: 540 VVGDIAIVTK 549
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13160471|gb|AAK13248.1|AF159498_1 putative glutamate receptor like-protein [Arabidopsis thaliana] gi|13160473|gb|AAK13249.1|AF159499_1 putative glutamate receptor like-protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/551 (61%), Positives = 445/551 (80%), Gaps = 8/551 (1%)
Query: 3 LWWLVSIFSFCI----GTAIQGA-LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSD 57
++W++ + SF + G +GA L+P ++VGAIFS GT+ G+V+ IAMKAA++D+NSD
Sbjct: 1 MFWVLVLLSFIVLIGDGMISEGAGLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDVNSD 60
Query: 58 PRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVP 117
P LGG KL IT +DAK NGFL+IMGALQFMETD +AI+GPQ+++MAHVLSHLANEL VP
Sbjct: 61 PSFLGGSKLRITTYDAKRNGFLTIMGALQFMETDAVAIIGPQTSIMAHVLSHLANELSVP 120
Query: 118 LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177
+LSFTALDP+LS LQ+PFFVQTAP+DL+LM AIAEM+SY+GW EVIA++NDDD RNG+T
Sbjct: 121 MLSFTALDPSLSALQFPFFVQTAPSDLFLMRAIAEMISYYGWSEVIALYNDDDNSRNGIT 180
Query: 178 ALGDKLAEIRCKISYKSALPPDQSVTE-TDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236
ALGD+L RCKISYK+ LP D +T ++ NELVK++ ME+RVI+V+ + +TG +F+
Sbjct: 181 ALGDELEGRRCKISYKAVLPLDVVITSPREIINELVKIQGMESRVIIVNTFPKTGKKIFE 240
Query: 237 VAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR 296
AQ+LGMM+ GYVWIATTWL++ +DS +PL KTA+S+ G LTLR HTP+SK+++DFV+R
Sbjct: 241 EAQKLGMMEKGYVWIATTWLTSLLDSVNPLPAKTAESLRGVLTLRIHTPNSKKKKDFVAR 300
Query: 297 WNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGL-GGGTLNLGA 355
WN LSNG++GLN YGLYAYDTVW+IARA+K LD ISFS+D KL + GGG+LNLGA
Sbjct: 301 WNKLSNGTVGLNVYGLYAYDTVWIIARAVKRLLDSRANISFSSDPKLTSMKGGGSLNLGA 360
Query: 356 LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415
LSIFD G +FL I+ TNMTG++G I F DRS++ PSYDIINV++ G+ +QIGYWSN+S
Sbjct: 361 LSIFDQGSQFLDYIVNTNMTGVTGQIQFLPDRSMIQPSYDIINVVDDGF-RQIGYWSNHS 419
Query: 416 GLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYR 475
GLS++PPE LY+K +NRSSSNQHL +V WPGG + PRGWVFPNNGR+LRIGVP+R S++
Sbjct: 420 GLSIIPPESLYKKLSNRSSSNQHLNNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFK 479
Query: 476 DFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSR 535
+FV +++G++ V GY IDVF AAV+L+ Y VP++F+ +GDG KNP ++E +N +T GV
Sbjct: 480 EFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVFD 539
Query: 536 ILTKKVAQLTR 546
+ +A +T+
Sbjct: 540 AVVGDIAIVTK 550
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18418637|ref|NP_567981.1| glutamate receptor 3.2 [Arabidopsis thaliana] gi|42573179|ref|NP_974686.1| glutamate receptor 3.2 [Arabidopsis thaliana] gi|41017224|sp|Q93YT1.2|GLR32_ARATH RecName: Full=Glutamate receptor 3.2; Short=AtGluR2; AltName: Full=Ligand-gated ion channel 3.2; Flags: Precursor gi|332661090|gb|AEE86490.1| glutamate receptor 3.2 [Arabidopsis thaliana] gi|332661091|gb|AEE86491.1| glutamate receptor 3.2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/551 (61%), Positives = 445/551 (80%), Gaps = 8/551 (1%)
Query: 3 LWWLVSIFSFCI----GTAIQGA-LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSD 57
++W++ + SF + G +GA L+P ++VGAIFS GT+ G+V+ IAMKAA++D+NSD
Sbjct: 1 MFWVLVLLSFIVLIGDGMISEGAGLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDVNSD 60
Query: 58 PRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVP 117
P LGG KL IT +DAK NGFL+IMGALQFMETD +AI+GPQ+++MAHVLSHLANEL VP
Sbjct: 61 PSFLGGSKLRITTYDAKRNGFLTIMGALQFMETDAVAIIGPQTSIMAHVLSHLANELSVP 120
Query: 118 LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177
+LSFTALDP+LS LQ+PFFVQTAP+DL+LM AIAEM+SY+GW EVIA++NDDD RNG+T
Sbjct: 121 MLSFTALDPSLSALQFPFFVQTAPSDLFLMRAIAEMISYYGWSEVIALYNDDDNSRNGIT 180
Query: 178 ALGDKLAEIRCKISYKSALPPDQSVTE-TDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236
ALGD+L RCKISYK+ LP D +T ++ NELVK++ ME+RVI+V+ + +TG +F+
Sbjct: 181 ALGDELEGRRCKISYKAVLPLDVVITSPREIINELVKIQGMESRVIIVNTFPKTGKKIFE 240
Query: 237 VAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR 296
AQ+LGMM+ GYVWIATTWL++ +DS +PL KTA+S+ G LTLR HTP+SK+++DFV+R
Sbjct: 241 EAQKLGMMEKGYVWIATTWLTSLLDSVNPLPAKTAESLRGVLTLRIHTPNSKKKKDFVAR 300
Query: 297 WNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGL-GGGTLNLGA 355
WN LSNG++GLN YGLYAYDTVW+IARA+K LD ISFS+D KL + GGG+LNLGA
Sbjct: 301 WNKLSNGTVGLNVYGLYAYDTVWIIARAVKRLLDSRANISFSSDPKLTSMKGGGSLNLGA 360
Query: 356 LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415
LSIFD G +FL I+ TNMTG++G I F DRS++ PSYDIINV++ G+ +QIGYWSN+S
Sbjct: 361 LSIFDQGSQFLDYIVNTNMTGVTGQIQFLPDRSMIQPSYDIINVVDDGF-RQIGYWSNHS 419
Query: 416 GLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYR 475
GLS++PPE LY+K +NRSSSNQHL +V WPGG + PRGWVFPNNGR+LRIGVP+R S++
Sbjct: 420 GLSIIPPESLYKKLSNRSSSNQHLNNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFK 479
Query: 476 DFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSR 535
+FV +++G++ V GY IDVF AAV+L+ Y VP++F+ +GDG KNP ++E +N +T GV
Sbjct: 480 EFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVFD 539
Query: 536 ILTKKVAQLTR 546
+ +A +T+
Sbjct: 540 AVVGDIAIVTK 550
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16604667|gb|AAL24126.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/551 (60%), Positives = 445/551 (80%), Gaps = 8/551 (1%)
Query: 3 LWWLVSIFSFCI----GTAIQGA-LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSD 57
++W++ + SF + G +GA L+P ++VGAIFS GT+ G+V+ IAMKAA++D+NSD
Sbjct: 1 MFWVLVLLSFIVLIGDGMISEGAGLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDVNSD 60
Query: 58 PRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVP 117
P LGG KL IT +DAK NGFL+IMGALQFMETD +AI+GPQ+++MAHVLSHLANEL VP
Sbjct: 61 PSFLGGSKLRITTYDAKRNGFLTIMGALQFMETDAVAIIGPQTSIMAHVLSHLANELSVP 120
Query: 118 LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177
+LSFTALDP+LS LQ+PFFVQTAP+DL+LM AIAEM+SY+GW EVIA++NDDD RNG+T
Sbjct: 121 MLSFTALDPSLSALQFPFFVQTAPSDLFLMRAIAEMISYYGWSEVIALYNDDDNSRNGIT 180
Query: 178 ALGDKLAEIRCKISYKSALPPDQSVTE-TDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236
ALGD+L RCKISYK+ LP D +T ++ NELVK++ ME+RVI+V+ + +TG +F+
Sbjct: 181 ALGDELEGRRCKISYKAVLPLDVVITSPREIINELVKIQGMESRVIIVNTFPKTGKKIFE 240
Query: 237 VAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR 296
AQ+LGMM+ GYVWIATTWL++ +DS +PL KTA+S+ G LTLR HTP+SK+++DFV+R
Sbjct: 241 EAQKLGMMEKGYVWIATTWLTSLLDSVNPLPAKTAESLRGVLTLRIHTPNSKKKKDFVAR 300
Query: 297 WNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGL-GGGTLNLGA 355
WN LSNG++GLN YGLYAYDTVW+IARA+K LD ISFS+D KL + GGG+LNLGA
Sbjct: 301 WNKLSNGTVGLNVYGLYAYDTVWIIARAVKRLLDSRANISFSSDPKLTSMKGGGSLNLGA 360
Query: 356 LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415
LSIFD G +FL I+ TNMTG++G I F DRS++ PSYDIINV++ G+ +QIGYWSN+S
Sbjct: 361 LSIFDQGSQFLDYIVNTNMTGVTGQIQFLPDRSMIQPSYDIINVVDDGF-RQIGYWSNHS 419
Query: 416 GLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYR 475
GLS++PPE LY+K +NRSSSNQHL +V WPGG + PRGWVFPNNGR+LRIGVP+R S++
Sbjct: 420 GLSIIPPESLYKKLSNRSSSNQHLNNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFK 479
Query: 476 DFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSR 535
+FV +++G++ V GY IDVF AAV+L+ Y VP++F+ +GDG K+P ++E +N +T GV
Sbjct: 480 EFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKSPNFNEFVNNVTIGVFD 539
Query: 536 ILTKKVAQLTR 546
+ +A +T+
Sbjct: 540 AVVGDIAIVTK 550
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3080421|emb|CAA18740.1| putative protein [Arabidopsis thaliana] gi|7270481|emb|CAB80246.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/528 (63%), Positives = 434/528 (82%), Gaps = 4/528 (0%)
Query: 15 GTAIQGA-LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDA 73
G +GA L+P ++VGAIFS GT+ G+V+ IAMKAA++D+NSDP LGG KL IT +DA
Sbjct: 18 GMISEGAGLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDVNSDPSFLGGSKLRITTYDA 77
Query: 74 KFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQY 133
K NGFL+IMGALQFMETD +AI+GPQ+++MAHVLSHLANEL VP+LSFTALDP+LS LQ+
Sbjct: 78 KRNGFLTIMGALQFMETDAVAIIGPQTSIMAHVLSHLANELSVPMLSFTALDPSLSALQF 137
Query: 134 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYK 193
PFFVQTAP+DL+LM AIAEM+SY+GW EVIA++NDDD RNG+TALGD+L RCKISYK
Sbjct: 138 PFFVQTAPSDLFLMRAIAEMISYYGWSEVIALYNDDDNSRNGITALGDELEGRRCKISYK 197
Query: 194 SALPPDQSVTE-TDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252
+ LP D +T ++ NELVK++ ME+RVI+V+ + +TG +F+ AQ+LGMM+ GYVWIA
Sbjct: 198 AVLPLDVVITSPREIINELVKIQGMESRVIIVNTFPKTGKKIFEEAQKLGMMEKGYVWIA 257
Query: 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGL 312
TTWL++ +DS +PL KTA+S+ G LTLR HTP+SK+++DFV+RWN LSNG++GLN YGL
Sbjct: 258 TTWLTSLLDSVNPLPAKTAESLRGVLTLRIHTPNSKKKKDFVARWNKLSNGTVGLNVYGL 317
Query: 313 YAYDTVWMIARALKLFLDQGNTISFSNDTKLNGL-GGGTLNLGALSIFDGGKKFLANILQ 371
YAYDTVW+IARA+K LD ISFS+D KL + GGG+LNLGALSIFD G +FL I+
Sbjct: 318 YAYDTVWIIARAVKRLLDSRANISFSSDPKLTSMKGGGSLNLGALSIFDQGSQFLDYIVN 377
Query: 372 TNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPAN 431
TNMTG++G I F DRS++ PSYDIINV++ G+ +QIGYWSN+SGLS++PPE LY+K +N
Sbjct: 378 TNMTGVTGQIQFLPDRSMIQPSYDIINVVDDGF-RQIGYWSNHSGLSIIPPESLYKKLSN 436
Query: 432 RSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYC 491
RSSSNQHL +V WPGG + PRGWVFPNNGR+LRIGVP+R S+++FV +++G++ V GY
Sbjct: 437 RSSSNQHLNNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFKEFVSRLDGSNKVQGYA 496
Query: 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539
IDVF AAV+L+ Y VP++F+ +GDG KNP ++E +N +T GVS+ + K
Sbjct: 497 IDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVSKRIKK 544
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| TAIR|locus:2122128 | 912 | GLUR2 "glutamate receptor 2" [ | 0.989 | 0.595 | 0.593 | 7.8e-181 | |
| TAIR|locus:2081805 | 903 | GLR3.6 "glutamate receptor 3.6 | 0.945 | 0.574 | 0.498 | 1.2e-145 | |
| TAIR|locus:2206095 | 933 | GLR3.3 "glutamate receptor 3.3 | 0.967 | 0.569 | 0.503 | 2.5e-145 | |
| TAIR|locus:2207165 | 959 | GLR3.4 "AT1G05200" [Arabidopsi | 0.916 | 0.524 | 0.499 | 8.5e-136 | |
| TAIR|locus:2062586 | 921 | GLR5 "glutamate receptor 5" [A | 0.914 | 0.545 | 0.394 | 7.7e-103 | |
| TAIR|locus:2047256 | 920 | GLR2.2 "glutamate receptor 2.2 | 0.925 | 0.552 | 0.309 | 8.5e-64 | |
| TAIR|locus:2047251 | 895 | GLR2.3 "glutamate receptor 2.3 | 0.925 | 0.567 | 0.302 | 3.9e-62 | |
| TAIR|locus:2181196 | 901 | GLR2.1 "glutamate receptor 2.1 | 0.923 | 0.562 | 0.287 | 3.1e-55 | |
| TAIR|locus:2066086 | 947 | GLR2.8 "glutamate receptor 2.8 | 0.870 | 0.504 | 0.287 | 4.4e-50 | |
| TAIR|locus:2066107 | 952 | GLR2.7 "glutamate receptor 2.7 | 0.812 | 0.468 | 0.288 | 4.3e-49 |
| TAIR|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1755 (622.8 bits), Expect = 7.8e-181, P = 7.8e-181
Identities = 327/551 (59%), Positives = 433/551 (78%)
Query: 3 LWWLVSIFSFCI----GTAIQGA-LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSD 57
++W++ + SF + G +GA L+P ++VGAIFS GT+ G+V+ IAMKAA++D+NSD
Sbjct: 1 MFWVLVLLSFIVLIGDGMISEGAGLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDVNSD 60
Query: 58 PRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVP 117
P LGG KL IT +DAK NGFL+IMGALQFMETD +AI+GPQ+++MAHVLSHLANEL VP
Sbjct: 61 PSFLGGSKLRITTYDAKRNGFLTIMGALQFMETDAVAIIGPQTSIMAHVLSHLANELSVP 120
Query: 118 LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177
+LSFTALDP+LS LQ+PFFVQTAP+DL+LM AIAEM+SY+GW EVIA++NDDD RNG+T
Sbjct: 121 MLSFTALDPSLSALQFPFFVQTAPSDLFLMRAIAEMISYYGWSEVIALYNDDDNSRNGIT 180
Query: 178 ALGDKLAEIRCKISYKSALPPDQSVTET-DVRNELVKVRMMEARVIVVHGYSRTGLMVFD 236
ALGD+L RCKISYK+ LP D +T ++ NELVK++ ME+RVI+V+ + +TG +F+
Sbjct: 181 ALGDELEGRRCKISYKAVLPLDVVITSPREIINELVKIQGMESRVIIVNTFPKTGKKIFE 240
Query: 237 VAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR 296
AQ+LGMM+ GYVWIATTWL++ +DS +PL KTA+S+ G LTLR HTP+SK+++DFV+R
Sbjct: 241 EAQKLGMMEKGYVWIATTWLTSLLDSVNPLPAKTAESLRGVLTLRIHTPNSKKKKDFVAR 300
Query: 297 WNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXX 356
WN LSNG++GLN YGLYAYDTVW+IARA+K LD ISFS+D K
Sbjct: 301 WNKLSNGTVGLNVYGLYAYDTVWIIARAVKRLLDSRANISFSSDPKLTSMKGGGSLNLGA 360
Query: 357 -SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415
SIFD G +FL I+ TNMTG++G I F DRS++ PSYDIINV++ G+ +QIGYWSN+S
Sbjct: 361 LSIFDQGSQFLDYIVNTNMTGVTGQIQFLPDRSMIQPSYDIINVVDDGF-RQIGYWSNHS 419
Query: 416 GLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYR 475
GLS++PPE LY+K +NRSSSNQHL +V WPGG + PRGWVFPNNGR+LRIGVP+R S++
Sbjct: 420 GLSIIPPESLYKKLSNRSSSNQHLNNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFK 479
Query: 476 DFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSR 535
+FV +++G++ V GY IDVF AAV+L+ Y VP++F+ +GDG KNP ++E +N +T GV
Sbjct: 480 EFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVFD 539
Query: 536 ILTKKVAQLTR 546
+ +A +T+
Sbjct: 540 AVVGDIAIVTK 550
|
|
| TAIR|locus:2081805 GLR3.6 "glutamate receptor 3.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
Identities = 266/534 (49%), Positives = 379/534 (70%)
Query: 5 WLVSIFSFCIGTAIQGALK-----PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPR 59
W + + C +QG K P+V+N+G++F+F ++ G+V ++AM AA +D+N+ P
Sbjct: 3 WFLLMLIICNAVPLQGLTKIVSARPQVVNIGSVFTFNSLIGKVIKVAMDAAVEDVNASPS 62
Query: 60 VLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLL 119
+L L I MHD K+NGF+SIM LQFME++T+AI+GPQ + A V++H+A EL++P+L
Sbjct: 63 ILNTTTLRIIMHDTKYNGFMSIMEPLQFMESETVAIIGPQRSTTARVVAHVATELKIPIL 122
Query: 120 SFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179
SF+A DPT+SPLQ+PFF++T+ NDL+ M+AIA++V ++GW EV+AI+ DDD GRNGV AL
Sbjct: 123 SFSATDPTMSPLQFPFFIRTSQNDLFQMAAIADIVQFYGWREVVAIYGDDDYGRNGVAAL 182
Query: 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239
GD+L+E RC+ISYK+ALPP + T ++ + L+KV + E+R+IVVH GL +F+VA+
Sbjct: 183 GDRLSEKRCRISYKAALPP--APTRENITDLLIKVALSESRIIVVHASFIWGLELFNVAR 240
Query: 240 RLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT 299
LGMM +GYVWIAT WLST ID+ SPL L T +I G +TLR HTP+S +++FV RW+
Sbjct: 241 NLGMMSTGYVWIATNWLSTIIDTDSPLPLDTINNIQGVITLRLHTPNSIMKQNFVQRWHN 300
Query: 300 LSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIF 359
L++ +GL+ Y LYAYDTVW++A+A+ F +G +SFS + +F
Sbjct: 301 LTH--VGLSTYALYAYDTVWLLAQAIDDFFKKGGNVSFSKNPIISELGGGNLHLDALKVF 358
Query: 360 DGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSV 419
DGGK FL +ILQ + GL+G + F DR+L++P++D++NVI GY IGYW N+SGLSV
Sbjct: 359 DGGKIFLESILQVDRIGLTGRMKFTSDRNLVNPAFDVLNVIGTGYTT-IGYWFNHSGLSV 417
Query: 420 VPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVF 479
+P +++ N S S Q L+SVVWPG PRGWVF NNGR LRIGVPNR + + V
Sbjct: 418 MPADEM----ENTSFSGQKLHSVVWPGHSIKIPRGWVFSNNGRHLRIGVPNRYRFEEVV- 472
Query: 480 KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV 533
V ++ G+C+DVF+AA+ LLPYAVP++ + +G+GH NP+ SEL+ ITTGV
Sbjct: 473 SVKSNGMITGFCVDVFIAAINLLPYAVPFELVAFGNGHDNPSNSELVRLITTGV 526
|
|
| TAIR|locus:2206095 GLR3.3 "glutamate receptor 3.3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
Identities = 270/536 (50%), Positives = 369/536 (68%)
Query: 1 MNLWWLVSIFSF-CIGTAIQG-ALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDP 58
M W SF C G + + KP+V+ +G+IFSF +V G+V++IA+ A D+NS+P
Sbjct: 1 MKQLWTFFFLSFLCSGLFRRTHSEKPKVVKIGSIFSFDSVIGKVAKIAIDEAVKDVNSNP 60
Query: 59 RVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPL 118
+L G K S++M ++ +GF+ ++ AL+FME D + I+GPQ +V+AH++SH+ANEL+VPL
Sbjct: 61 DILSGTKFSVSMQNSNCSGFMGMVEALRFMEKDIVGIIGPQCSVVAHMISHMANELRVPL 120
Query: 119 LSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178
LSF DP +SPLQ+P+F++T +DLY M AIA +V ++GW EVIA+F DDD GRNGV A
Sbjct: 121 LSFAVTDPVMSPLQFPYFIRTTQSDLYQMDAIASIVDFYGWKEVIAVFVDDDFGRNGVAA 180
Query: 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVA 238
L DKLA R +I+YK+ L PD +V + ++ N L+K+ +++ R++V+H YS G VF A
Sbjct: 181 LNDKLASRRLRITYKAGLHPDTAVNKNEIMNMLIKIMLLQPRIVVIHVYSELGFAVFKEA 240
Query: 239 QRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWN 298
+ LGMM +GYVWIAT WLST +DS SPL + ++I G L LR HTPDS +R+F RW
Sbjct: 241 KYLGMMGNGYVWIATDWLSTNLDSSSPLPAERLETIQGVLVLRPHTPDSDFKREFFKRWR 300
Query: 299 TLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXX-S 357
+S S+ LN YGLYAYD+V ++AR L F G ISFSN + +
Sbjct: 301 KMSGASLALNTYGLYAYDSVMLLARGLDKFFKDGGNISFSNHSMLNTLGKSGNLNLEAMT 360
Query: 358 IFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGL 417
+FDGG+ L +IL T M GL+G + F DRS P+YDIINV G +QIGYWSN+SGL
Sbjct: 361 VFDGGEALLKDILGTRMVGLTGQLQFTPDRSRTRPAYDIINVAGTGV-RQIGYWSNHSGL 419
Query: 418 SVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDF 477
S V PE LY K S++ L V+WPG +KPRGWVF NNG++L+IGVP RVSY++F
Sbjct: 420 STVLPELLYTKEKPNMSTSPKLKHVIWPGETFTKPRGWVFSNNGKELKIGVPLRVSYKEF 479
Query: 478 VFKVNGTD-IVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTG 532
V ++ GT+ + G+CIDVF AAV LLPYAVP KFIPYG+G +NP+Y+ ++ ITTG
Sbjct: 480 VSQIRGTENMFKGFCIDVFTAAVNLLPYAVPVKFIPYGNGKENPSYTHMVEMITTG 535
|
|
| TAIR|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1330 (473.2 bits), Expect = 8.5e-136, P = 8.5e-136
Identities = 253/507 (49%), Positives = 348/507 (68%)
Query: 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82
+P +NVGA+F++ + G+ ++ A+KAA DD+N+D VL G KL+I D+ +GF+ M
Sbjct: 57 RPSSVNVGALFTYDSFIGRAAKPAVKAAMDDVNADQSVLKGIKLNIIFQDSNCSGFIGTM 116
Query: 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPN 142
GALQ ME +A +GPQS+ +AH++S++ANEL VPLLSF A DPTLS LQ+P+F++T N
Sbjct: 117 GALQLMENKVVAAIGPQSSGIAHMISYVANELHVPLLSFGATDPTLSSLQFPYFLRTTQN 176
Query: 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSV 202
D + M AIA+ +SY GW +VIAIF DD+ GRNG++ LGD LA+ R +ISYK+A+ P
Sbjct: 177 DYFQMHAIADFLSYSGWRQVIAIFVDDECGRNGISVLGDVLAKKRSRISYKAAITP--GA 234
Query: 203 TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262
+ +R+ LV V +ME+RV VVH +GL VF VA+ LGMM SGYVWIAT WL T +DS
Sbjct: 235 DSSSIRDLLVSVNLMESRVFVVHVNPDSGLNVFSVAKSLGMMASGYVWIATDWLPTAMDS 294
Query: 263 KSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIA 322
+ T + G + R +T +S +R F++RW L G N Y +YAYD+VW++A
Sbjct: 295 MEHVDSDTMDLLQGVVAFRHYTIESSVKRQFMARWKNLRPND-GFNSYAMYAYDSVWLVA 353
Query: 323 RALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFLANILQTNMTGLSGPIH 382
RAL +F + N I+FSND S+F+ G+KF+ IL N TG++GPI
Sbjct: 354 RALDVFFRENNNITFSNDPNLHKTNGSTIQLSALSVFNEGEKFMKIILGMNHTGVTGPIQ 413
Query: 383 FNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSV 442
F+ DR+ ++P+Y+++N +E P+ +GYWSN+SGLSVV PE LY +P N S++NQ L +
Sbjct: 414 FDSDRNRVNPAYEVLN-LEGTAPRTVGYWSNHSGLSVVHPETLYSRPPNTSTANQRLKGI 472
Query: 443 VWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL 502
++PG VT PRGWVFPNNG+ LRIGVPNRVSY D+V K V GYCIDVF AA+ LL
Sbjct: 473 IYPGEVTKPPRGWVFPNNGKPLRIGVPNRVSYTDYVSKDKNPPGVRGYCIDVFEAAIELL 532
Query: 503 PYAVPYKFIPYGDGHKNPTYSELINQI 529
PY VP +I YGDG +NP+Y L+N++
Sbjct: 533 PYPVPRTYILYGDGKRNPSYDNLVNEV 559
|
|
| TAIR|locus:2062586 GLR5 "glutamate receptor 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
Identities = 202/512 (39%), Positives = 314/512 (61%)
Query: 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82
+P+++N+GA+F+F +V G+ +++A++AA D+N+D L +L + M D+ N F
Sbjct: 27 RPQLVNIGAVFAFDSVIGRAAKVALEAAVSDVNNDKSFLKETELRLLMEDSACNVFRGSF 86
Query: 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPN 142
GA + +E + +A++GP S+ +AH +S +A L PL+SF A DPTLS LQ+PFF++T PN
Sbjct: 87 GAFELLEKEVVAMIGPISSSVAHTISDIAKGLHFPLVSFAATDPTLSALQFPFFLRTTPN 146
Query: 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSV 202
D + MSA+ ++++++GW EVI++++DD+ GRNGV+AL D+L + R +ISYK +P
Sbjct: 147 DAHQMSALVDLINFYGWKEVISVYSDDELGRNGVSALDDELYKKRSRISYK--VPLSVHS 204
Query: 203 TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262
E + N L K + + RV ++H L +FD+AQ+L MM YVW+AT WLS +DS
Sbjct: 205 DEKFLTNALNKSKSIGPRVYILHFGPDPLLRIFDIAQKLQMMTHEYVWLATDWLSVTLDS 264
Query: 263 KSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIA 322
S T K + G + LRQH P+S + F + SN S +N Y L+AYDTVWMIA
Sbjct: 265 LSDKG--TLKRLEGVVGLRQHIPESVKMEHFTHKLQ--SNRS--MNAYALHAYDTVWMIA 318
Query: 323 RALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFLANILQTNMTGLSGPIH 382
++ L++G I+FS K F+ G+ L +L+ N TG++G +
Sbjct: 319 HGIEELLNEGINITFSYSEKLLHARGTKLHLEKIKFFNSGELLLEKLLKVNFTGIAGQVQ 378
Query: 383 FNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSV 442
F R+++ Y+IINV + +G+WS G SVV P+ + + S++ L +
Sbjct: 379 FGSGRNVIGCDYEIINVNKTDV-HTVGFWSKNGGFSVVAPKTRHSQKKTSFVSDEKLGDI 437
Query: 443 VWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKV-NGTDIVHGYCIDVFLAAVRL 501
WPGG KPRGWV ++ L+I VP RVS+ +FV + N + + G+CIDVF+ A++
Sbjct: 438 TWPGGGREKPRGWVIADSADPLKIVVPRRVSFVEFVTEEKNSSHRIQGFCIDVFIEALKF 497
Query: 502 LPYAVPYKFIPYGDGHKNPTYSELINQITTGV 533
+PY+VPY F P+G+GH +P Y+ LI +T GV
Sbjct: 498 VPYSVPYIFEPFGNGHSSPNYNHLIQMVTDGV 529
|
|
| TAIR|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 8.5e-64, P = 8.5e-64
Identities = 167/539 (30%), Positives = 278/539 (51%)
Query: 5 WLVSIFSFCIGTAI-QGALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGG 63
+L F FC+ ++ Q K +V N+G + GT V+ + + + D S R
Sbjct: 10 FLFLFFFFCLESSRGQDNGKTQV-NIGVVSDVGTSYPDVAMLCINMSLADFYSS-RPQFQ 67
Query: 64 RKLSITMHDAKFNGFLSIMGALQFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFT 122
+L + + D+K + + A+ ++ + AI+GP +++ AH L + + +VP++S++
Sbjct: 68 TRLVVNVGDSKNDVVGAATAAIDLIKNKQVKAILGPWTSMQAHFLIEIGQKSRVPVVSYS 127
Query: 123 ALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182
A P+L+ L+ P+F + D + AI ++ FGW EV+ ++ D+ G + L D
Sbjct: 128 ATSPSLTSLRSPYFFRATYEDSSQVHAIKAIIKLFGWREVVPVYIDNTFGEGIMPRLTDS 187
Query: 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242
L +I +I Y+S +P + T+ D+ EL+K+ M RV +VH S VF A+ LG
Sbjct: 188 LQDINVRIPYRSVIP--LNATDQDISVELLKMMNMPTRVFIVHMSSSLASTVFIKAKELG 245
Query: 243 MMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSN 302
+M GYVWI T + + S + ++ + +LG ++ + P SK F SRW
Sbjct: 246 LMKPGYVWILTNGVMDGLRSINETGIEAMEGVLG---IKTYIPKSKDLETFRSRWKRRFP 302
Query: 303 GSIGLNPYGLYAYDTVWMIARALKLFLDQG-NTISFSN-DTKXXXXXXXXXXXXXXSIFD 360
+ LN YGL+AYD +A A++ D G N ++FSN DT S F
Sbjct: 303 -QMELNVYGLWAYDATTALAMAIE---DAGINNMTFSNVDT---GKNVSELDGLGLSQF- 354
Query: 361 GGKKFLANILQTNMTGLSGPIHFNQDRSLLHPS-YDIINVIEHGYPQQIGYWSNYSGLSV 419
G K L + GL+G HF + L PS ++I+N+I G + IG+W+ +GL V
Sbjct: 355 -GPKLLQTVSTVQFKGLAGDFHFVSGQ--LQPSVFEIVNMIGTG-ERSIGFWTEGNGL-V 409
Query: 420 VPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVF 479
++ R S+ HL ++WPG S P+GW P NG++LRIGVP R+ + D V
Sbjct: 410 KKLDQEPRSIGTLSTWPDHLKHIIWPGEAVSVPKGWEIPTNGKKLRIGVPKRIGFTDLVK 469
Query: 480 ----KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPT--YSELINQITTG 532
+ + +V G+CID F A ++ +PY V Y+F P+ + P +++L++Q+ G
Sbjct: 470 VTRDPITNSTVVKGFCIDFFEAVIQAMPYDVSYEFFPFEKPNGEPAGNHNDLVHQVYLG 528
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| TAIR|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 3.9e-62, P = 3.9e-62
Identities = 163/538 (30%), Positives = 276/538 (51%)
Query: 6 LVSIFSFCIGTAIQGALKPEVL-NVGAIFSFGTVNGQVSRIAMKAAQDDI-NSDPRVLGG 63
++ +F FC+ +G + L +VG + T + +V + + + D +S+P+
Sbjct: 10 ILLVFFFCLEFN-RGQNNGKTLVDVGVVTDVDTSHSKVVMLCINMSISDFYSSNPQF--E 66
Query: 64 RKLSITMHDAKFNGFLSIMGALQFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFT 122
+L + + D+K + + + AL ++ + AI+GP +++ AH L + + +VP++S++
Sbjct: 67 TRLVVNVGDSKSDVVGAAIAALDLIKNKQVKAILGPWTSMQAHFLIEIGQKSRVPIVSYS 126
Query: 123 ALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182
A P L+ L+ P+F++ D + + I ++ FGW EV+ ++ D+ G + L D
Sbjct: 127 ATSPILTSLRSPYFLRATYEDSFQVQPIKAIIKLFGWREVVPVYIDNTFGEGIMPRLTDA 186
Query: 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242
L +I +I Y+S + + T+ ++ EL+K+ M RV +VH Y F A+ LG
Sbjct: 187 LQDINVRIPYRSVIAIN--ATDHEISVELLKMMNMPTRVFLVHMYYDLASRFFIKAKELG 244
Query: 243 MMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSN 302
+M+ GYVWI T + ID S ++ +++ G L ++ + P S F SRW +L
Sbjct: 245 LMEPGYVWILTNGV---IDDLSLINETAVEAMEGVLGIKTYIPKSPDLEKFRSRWRSLFP 301
Query: 303 GSIGLNPYGLYAYDTVWMIARALKLFLDQG-NTISFSNDTKXXXXXXXXXXXXXXSIFDG 361
+ L+ YGL+AYD +A A++ + G N ++FS K +
Sbjct: 302 -RVELSVYGLWAYDATTALAVAIE---EAGTNNMTFS---KVVDTGRNVSELEALGLSQF 354
Query: 362 GKKFLANILQTNMTGLSGPIHFNQDRSLLHPS-YDIINVIEHGYPQQIGYWSNYSGLSVV 420
G K L +L GL+G F R L PS ++I+N+I G + IG+W +GL V
Sbjct: 355 GPKLLQTLLTVQFRGLAGEFRFF--RGQLQPSVFEIVNIINTG-EKSIGFWKEGNGL-VK 410
Query: 421 PPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVF- 479
++ + S+ HL +VWPG S P+GW P G++LRIGVP R Y D V
Sbjct: 411 KLDQQASSISALSTWKDHLKHIVWPGEADSVPKGWQIPTKGKKLRIGVPKRTGYTDLVKV 470
Query: 480 ---KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--DGHKNPTYSELINQITTG 532
+ + +V G+CID F A +R LPY V Y+FIP+ DG Y++L+ Q+ G
Sbjct: 471 TRDPITNSTVVTGFCIDFFEAVIRELPYDVSYEFIPFEKPDGKTAGNYNDLVYQVYLG 528
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| TAIR|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 3.1e-55, P = 3.1e-55
Identities = 155/539 (28%), Positives = 260/539 (48%)
Query: 1 MNLWWLVSIFSFCIGTAIQGALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDI-NSDPR 59
++L + V +F +G A Q + +NVG + GT ++ + + + D +S P
Sbjct: 9 LSLLFFVIVFLMQVGEA-QNRITN--VNVGIVNDIGTAYSNMTLLCINMSLSDFYSSHPE 65
Query: 60 VLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVMAHVLSHLANELQVPL 118
+L T+ D+K + + AL + + AI+GP +++ A + + + QVP+
Sbjct: 66 TQ--TRLVTTVVDSKNDVVTAAAAALDLITNKEVKAILGPWTSMQAQFMIEMGQKSQVPI 123
Query: 119 LSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178
++++A P+L+ ++ +F + +D + AI E++ FGW EV ++ DD G +
Sbjct: 124 VTYSATSPSLASIRSQYFFRATYDDSSQVHAIKEIIKLFGWREVAPVYVDDTFGEGIMPR 183
Query: 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVA 238
L D L EI +I Y++ + P+ T+ ++ EL+++ + RV VVH F A
Sbjct: 184 LTDVLQEINVRIPYRTVISPN--ATDDEISVELLRMMTLPTRVFVVHLVELLASRFFAKA 241
Query: 239 QRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWN 298
+G+M GYVWI T ++ + + ++T + +LG T + P SK +F SRW
Sbjct: 242 TEIGLMKQGYVWILTNTITDVLSIMNETEIETMQGVLGVKT---YVPRSKELENFRSRWT 298
Query: 299 TLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSI 358
S LN YGL+AYD AL L +++ T + + S
Sbjct: 299 KRFPIS-DLNVYGLWAYDAT----TALALAIEEAGTSNLTFVKMDAKRNVSELQGLGVSQ 353
Query: 359 FDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPS-YDIINVIEHGYPQQIGYWSNYSGL 417
+ G K L + + GL+G F L PS ++I+NV G + IG+W GL
Sbjct: 354 Y--GPKLLQTLSRVRFQGLAGDFQFINGE--LQPSVFEIVNVNGQG-GRTIGFWMKEYGL 408
Query: 418 SVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDF 477
+K K SS L ++WPG TS P+GW P NG++L+IGVP +++ F
Sbjct: 409 FKNVDQKPASK-TTFSSWQDRLRPIIWPGDTTSVPKGWEIPTNGKRLQIGVPVNNTFQQF 467
Query: 478 VFK----VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTG 532
V + + I G+ ID F A ++ +PY + Y FIP+ DG Y L+ Q+ G
Sbjct: 468 VKATRDPITNSTIFSGFSIDYFEAVIQAIPYDISYDFIPFQDGG----YDALVYQVYLG 522
|
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| TAIR|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 4.4e-50, P = 4.4e-50
Identities = 150/521 (28%), Positives = 256/521 (49%)
Query: 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSD-PRVLGGRKLSITMHDAKFNGFLSIMGAL 85
+ VG + T ++ ++ A D D P +L++ + D+ + + AL
Sbjct: 33 IKVGVVLDLNTTFSKICLTSINLALSDFYKDHPNYR--TRLALHVRDSMKDTVQASAAAL 90
Query: 86 QFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDL 144
++ + + AI+GP ++ A + LAN+ QVP +SF+A P L+ ++ +FV+ +D
Sbjct: 91 DLIQNEQVSAIIGPIDSMQAKFMIKLANKTQVPTISFSATSPLLTSIKSDYFVRGTIDDS 150
Query: 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTE 204
Y + AIA + FGW V+AI+ D++ G + L D L +++ +S +P + + +
Sbjct: 151 YQVKAIAAIFESFGWRSVVAIYVDNELGEGIMPYLFDALQDVQVD---RSVIPSEAN--D 205
Query: 205 TDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS-K 263
+ EL K+ + RV VVH SR +F+ A +GMM+ GYVW+ T ++ +
Sbjct: 206 DQILKELYKLMTRQTRVFVVHMASRLASRIFEKATEIGMMEEGYVWLMTNGMTHMMRHIH 265
Query: 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT---LSNGSI--GLNPYGLYAYDTV 318
SL T +LG +R H P SK DF RW N + L+ +GL+AYD+
Sbjct: 266 HGRSLNTIDGVLG---VRSHVPKSKGLEDFRLRWKRNFKKENPWLRDDLSIFGLWAYDST 322
Query: 319 WMIARALKLFLDQGNTISFS-NDTKXXXXXXXXXXXXXXSIFDGGKKFLANILQTNMTGL 377
+A A+ ++ N SF N+ S + G L + + GL
Sbjct: 323 TALAMAV----EKTNISSFPYNNASGSSNNMTDLGTLHVSRY--GPSLLEALSEIRFNGL 376
Query: 378 SGPIHFNQ-DRSLLHPSYDIINVIEHGYPQQI-GYWSNYSGLSVVPPEKLYRKPANRSSS 435
+G FN DR L P ++IIN + G ++I G+W+ +GL V K S +
Sbjct: 377 AG--RFNLIDRQLESPKFEIINFV--GNEERIVGFWTPSNGLVNVNSNK------TTSFT 426
Query: 436 NQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNG--TDIV--HGYC 491
+ ++WPG T P+GW P NG+++++GVP + + +FV + T+I GY
Sbjct: 427 GERFGPLIWPGKSTIVPKGWEIPTNGKKIKVGVPVKKGFFNFVEVITDPITNITTPKGYA 486
Query: 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTG 532
ID+F AA++ LPY+V ++ Y + Y +L+ ++ G
Sbjct: 487 IDIFEAALKKLPYSVIPQY--YRFESPDDDYDDLVYKVDNG 525
|
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| TAIR|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 4.3e-49, P = 4.3e-49
Identities = 138/479 (28%), Positives = 239/479 (49%)
Query: 65 KLSITMHDAKFNGFLSIMGALQFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFTA 123
+L+I + D+ + + AL ++ + + AI+GP++++ A + LA++ QVP ++F+A
Sbjct: 76 RLAIHIRDSMEDVVQASSAALDLIKNEQVSAIIGPRTSMQAEFMIRLADKSQVPTITFSA 135
Query: 124 LDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183
P L+ + P+FV+ +D + AIA +V FGW V+AI+ D++ G + L D L
Sbjct: 136 TCPLLTSINSPYFVRATLDDSSQVKAIAAIVKSFGWRNVVAIYVDNEFGEGILPLLTDAL 195
Query: 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243
+++ + + +P Q + + EL K+ M+ RV VVH G F A+ +GM
Sbjct: 196 QDVQAFVVNRCLIP--QEANDDQILKELYKLMTMQTRVFVVHMPPTLGFRFFQKAREIGM 253
Query: 244 MDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL--S 301
M+ GYVW+ T + + S S + +++ G L +R H P SK+ ++F RW +
Sbjct: 254 MEEGYVWLLTDGVMNLLKSNERGS--SLENMQGVLGVRSHIPKSKKLKNFRLRWEKMFPK 311
Query: 302 NGSIG-LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFD 360
G+ +N + L AYD++ +A A+ ++ N S D +
Sbjct: 312 KGNDEEMNIFALRAYDSITALAMAV----EKTNIKSLRYDHPIASGNNKTNLGTL-GVSR 366
Query: 361 GGKKFLANILQTNMTGLSGPIHFNQDRSLLHPS-YDIINVIEHGYPQQI-GYWSNYSGLS 418
G L + GL+G F L S +D+IN+I G ++I G W +G+
Sbjct: 367 YGPSLLKALSNVRFNGLAG--EFELINGQLESSVFDVINII--GSEERIIGLWRPSNGI- 421
Query: 419 VVPPEKLYRKPANRSSS-NQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDF 477
+ K N +S + L V+WPG P+GW P NG+ LR+G+P + + +F
Sbjct: 422 ------VNAKSKNTTSVLGERLGPVIWPGKSKDVPKGWQIPTNGKMLRVGIPVKKGFLEF 475
Query: 478 VFK----VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTG 532
V ++ GYCI++F A ++ LPY+V K+I + +N Y E++ Q+ TG
Sbjct: 476 VDAKIDPISNAMTPTGYCIEIFEAVLKKLPYSVIPKYIAFLSPDEN--YDEMVYQVYTG 532
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_LG_IX000015 | glutamate-gated kainate-type ion channel receptor subunit GluR5 (900 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 549 | |||
| cd06366 | 350 | cd06366, PBP1_GABAb_receptor, Ligand-binding domai | 1e-116 | |
| pfam01094 | 343 | pfam01094, ANF_receptor, Receptor family ligand bi | 1e-69 | |
| cd06350 | 348 | cd06350, PBP1_GPCR_family_C_like, Ligand-binding d | 6e-64 | |
| cd06269 | 298 | cd06269, PBP1_glutamate_receptors_like, Family C G | 2e-48 | |
| cd04509 | 299 | cd04509, PBP1_ABC_transporter_GCPR_C_like, Family | 3e-22 | |
| cd06351 | 328 | cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci | 2e-19 | |
| cd06268 | 298 | cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas | 3e-17 | |
| cd06352 | 389 | cd06352, PBP1_NPR_GC_like, Ligand-binding domain o | 1e-16 | |
| cd06363 | 410 | cd06363, PBP1_Taste_receptor, Ligand-binding domai | 1e-16 | |
| cd06368 | 324 | cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc | 2e-15 | |
| cd06365 | 469 | cd06365, PBP1_Pheromone_receptor, Ligand-binding d | 5e-14 | |
| cd06382 | 327 | cd06382, PBP1_iGluR_Kainate, N-terminal leucine/is | 2e-13 | |
| pfam13458 | 343 | pfam13458, Peripla_BP_6, Periplasmic binding prote | 5e-13 | |
| cd01391 | 269 | cd01391, Periplasmic_Binding_Protein_Type_1, Type | 3e-12 | |
| cd06367 | 362 | cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isole | 6e-12 | |
| cd06361 | 403 | cd06361, PBP1_GPC6A_like, Ligand-binding domain of | 2e-11 | |
| cd06375 | 458 | cd06375, PBP1_mGluR_groupII, Ligand binding domain | 3e-11 | |
| cd06364 | 510 | cd06364, PBP1_CaSR, Ligand-binding domain of the C | 4e-11 | |
| COG0683 | 366 | COG0683, LivK, ABC-type branched-chain amino acid | 2e-10 | |
| cd06379 | 377 | cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/i | 8e-10 | |
| cd06362 | 452 | cd06362, PBP1_mGluR, Ligand binding domain of the | 7e-09 | |
| cd06370 | 404 | cd06370, PBP1_Speract_GC_like, Ligand-binding doma | 1e-08 | |
| cd06374 | 472 | cd06374, PBP1_mGluR_groupI, Ligand binding domain | 1e-07 | |
| cd06380 | 382 | cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isole | 3e-07 | |
| cd06373 | 396 | cd06373, PBP1_NPR_like, Ligand binding domain of n | 1e-06 | |
| cd06343 | 362 | cd06343, PBP1_ABC_ligand_binding_like_8, Type I pe | 8e-06 | |
| cd06372 | 391 | cd06372, PBP1_GC_G_like, Ligand-binding domain of | 2e-05 | |
| cd06340 | 347 | cd06340, PBP1_ABC_ligand_binding_like_6, Type I pe | 2e-05 | |
| cd06392 | 400 | cd06392, PBP1_iGluR_delta_1, N-terminal leucine/is | 3e-05 | |
| cd06376 | 463 | cd06376, PBP1_mGluR_groupIII, Ligand-binding domai | 3e-05 | |
| cd06391 | 400 | cd06391, PBP1_iGluR_delta_2, N-terminal leucine/is | 5e-05 | |
| cd06393 | 384 | cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal le | 1e-04 | |
| cd06333 | 312 | cd06333, PBP1_ABC-type_HAAT_like, Type I periplasm | 0.001 | |
| cd06383 | 368 | cd06383, PBP1_iGluR_AMPA_Like, N-terminal leucine/ | 0.002 |
| >gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) | Back alignment and domain information |
|---|
Score = 346 bits (890), Expect = e-116
Identities = 138/402 (34%), Positives = 204/402 (50%), Gaps = 62/402 (15%)
Query: 28 NVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ 86
+GAIF G+ G+ + A++ A +D+N+D +L G +L + + D+K + + AL
Sbjct: 1 RIGAIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALD 60
Query: 87 FMET-DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQTAPNDL 144
+E +AI+GPQ + +A ++ +ANE VP+LSF A P+LS LQYP+F +T P+D
Sbjct: 61 LLENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDS 120
Query: 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTE 204
AIA ++ FGW V I+ DDD G G+ L D L E +ISY++A PP S +
Sbjct: 121 SQNPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPP--SAND 178
Query: 205 TDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKS 264
D+ + L K++ ++RVIVVH VF A +LGMM GYVWI T WLS+ S S
Sbjct: 179 DDITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLSSNWWSSS 238
Query: 265 P-LSLKTAKSILGALTLRQHTPDSKRR-RDFVSRWNTLSNGSI----GLNPYGLYAYDTV 318
+ +++ G + +R + P+S ++F SRW + Y LYAYD V
Sbjct: 239 DCTDEEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWRKRFGNENPELTEPSIYALYAYDAV 298
Query: 319 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLS 378
W TN GLS
Sbjct: 299 WA--------------------------------------------------STNFNGLS 308
Query: 379 GPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVV 420
GP+ F+ R L P+++IIN+I GY ++IG+WS+ SGLSV
Sbjct: 309 GPVQFDGGRRLASPAFEIINIIGKGY-RKIGFWSSESGLSVF 349
|
Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350 |
| >gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 1e-69
Identities = 107/362 (29%), Positives = 159/362 (43%), Gaps = 30/362 (8%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105
AM+ A +DIN+D +L G L D + F A +A++GP + +A
Sbjct: 5 AMRLAIEDINADGGLLPGITLGYEDDDTCDDSFAVAAAACLLKSKGVVAVIGPSCSSVAI 64
Query: 106 VLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIA 164
++ LA +P++S+ A P LS +YP F +T P+D AIA+++ +FGW V
Sbjct: 65 AVARLAGAFGIPMISYGATSPELSDKTRYPTFARTVPSDSKQARAIADILKHFGWKRVAV 124
Query: 165 IFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 224
I++DDD G G+ AL D L E + ++ T + EL K +ARVIVV
Sbjct: 125 IYDDDDYGEGGLEALEDALREAGLNVVAVASEVIASDDDFTALLKEL-KDIKSKARVIVV 183
Query: 225 HGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHT 284
G S + A+ LG+M GYVWI T + DS + K ++ G L
Sbjct: 184 CGSSDDLRQILRQARELGLMSGGYVWILTDL---WSDSLDIDNDKAREAAKGVLGFTLKP 240
Query: 285 PDSKRRRDFVSRWNTLSN-----GSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339
PDS ++FV R L+N N Y L AYD V+++A AL L I+
Sbjct: 241 PDSPGFQEFVERLKKLANRCTPALDTEPNGYALLAYDAVYLLAHALNEALRDDPNITRGL 300
Query: 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQ-DRSLLHPSYDIIN 398
G + L + N GL+GP+ F+ S +I+N
Sbjct: 301 W-------------------VDGSQLLEYLRNVNFEGLTGPVQFDDNGGRRPDYSLEILN 341
Query: 399 VI 400
Sbjct: 342 WD 343
|
This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Length = 343 |
| >gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 6e-64
Identities = 85/321 (26%), Positives = 142/321 (44%), Gaps = 46/321 (14%)
Query: 28 NVGAIFSFGTVNGQVSRI----------AMKAAQDD---INSDPRVLGGRKLSITMHDAK 74
+G +F + + VS A +A IN+DP +L L ++D+
Sbjct: 1 IIGGLFPLHSGSESVSLKCGRFGKKGLQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSC 60
Query: 75 FNGFLSIMGALQFMETD--------------TLAIVGPQSAVMAHVLSHLANELQVPLLS 120
+ +++ AL + + +A++GP S+ ++ ++ L ++P +S
Sbjct: 61 CSPAVALRAALDLLLSGEGTTPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQIS 120
Query: 121 FTALDPTLS-PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179
+ A P LS LQ+P F +T P+D AI ++ +FGW V +++DDD GR+G++ L
Sbjct: 121 YGATSPLLSDKLQFPSFFRTVPSDTSQALAIVALLKHFGWTWVGLVYSDDDYGRSGLSDL 180
Query: 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239
++L + I++ A+PP S TE D++ L K++ ARVIVV G L +F A
Sbjct: 181 EEELEKNGICIAFVEAIPP--SSTEEDIKRILKKLKSSTARVIVVFGDEDDALRLFCEAY 238
Query: 240 RLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT 299
+LGM Y I+T W ++ L + G L H P S F
Sbjct: 239 KLGMTG-KYWIISTDWDTSTCLLLFTL-----DAFQGVLGFSGHAPRSGEIPGFKDFLRK 292
Query: 300 LSNGSIGLNPYGLYAYDTVWM 320
Y YD V+
Sbjct: 293 ----------YAYNVYDAVYA 303
|
Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further devided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins. Length = 348 |
| >gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors | Back alignment and domain information |
|---|
Score = 170 bits (431), Expect = 2e-48
Identities = 67/305 (21%), Positives = 120/305 (39%), Gaps = 45/305 (14%)
Query: 28 NVGAIFSFGTVNGQVSR--IAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGAL 85
+G +F + AA + L L ++D+ + + AL
Sbjct: 1 RIGGLFPLHSGGRFGEEGAFRAAAALFAVEEINNDLPNTTLGYEIYDSCCSPSDAFSAAL 60
Query: 86 QFMET-----DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQT 139
+A++GP S+ A ++ L L +P +S++A P LS Q+P F++T
Sbjct: 61 DLCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALHIPQISYSATSPLLSDKEQFPSFLRT 120
Query: 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD 199
P+D AI +++ +FGW V +++DDD GR + L ++L + +++ ++P
Sbjct: 121 VPSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYGRRLLELLEEELEKNGICVAFVESIPDG 180
Query: 200 QSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259
D+R L +++ ARVIVV L + + A LGMM + I WL++
Sbjct: 181 SE----DIRRLLKELKSSTARVIVVFSSEEDALRLLEEAVELGMMTGYHWIITDLWLTSC 236
Query: 260 IDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVW 319
+D + G++ YD V+
Sbjct: 237 LDLELLEYF---------------------------------PGNLTGFGEAALVYDAVY 263
Query: 320 MIARA 324
RA
Sbjct: 264 AGRRA 268
|
This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G). Length = 298 |
| >gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 3e-22
Identities = 63/306 (20%), Positives = 126/306 (41%), Gaps = 21/306 (6%)
Query: 28 NVGAIFSFGTVNGQ--VSRI-AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGA 84
+G +F + R+ + A ++IN+ + GRKL + ++D + + ++ A
Sbjct: 1 KIGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKG-GIPGRKLELVIYDDQSDPARALAAA 59
Query: 85 LQFMETDT-LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQTAPN 142
+ + + A+VGP S+ +A ++ +A L++PL+S A P L+ YP+ +T P+
Sbjct: 60 RRLCQQEGVDALVGPVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPS 119
Query: 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV----TALGDKLAEIRCKISYKSALPP 198
D A+A+ + + W +V +++DD GR + A K + + Y
Sbjct: 120 DEQQAEALADYIKEYNWKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPL---- 175
Query: 199 DQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258
TD + L K++ + VIV+ G + A G+ GY + T +
Sbjct: 176 ----GTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQAAEAGLT-GGYPILGITLGLS 230
Query: 259 FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTV 318
+ ++ + A+ +L P + + + + AYD V
Sbjct: 231 DVLLEAG--GEAAEGVLTGTPYFPGDPPPESFFFVRAAAREKKKYEDQPDYFAALAYDAV 288
Query: 319 WMIARA 324
+ R
Sbjct: 289 LLGRRG 294
|
This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4- isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine-binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus - which is included in this CD - followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type II periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Length = 299 |
| >gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 73/395 (18%), Positives = 135/395 (34%), Gaps = 82/395 (20%)
Query: 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGAL-- 85
N+GAIF + + +A +AA D +N++ KLS+ + + N S++ A+
Sbjct: 1 NIGAIFD---RDARKEELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLRAVCD 57
Query: 86 QFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFT-ALDPTLSPLQYPFFVQTAPNDL 144
+ AI GP S+ A + + + L++P +S + + + +Q P+
Sbjct: 58 LLVSQGVAAIFGPTSSESASAVQSICDALEIPHISISGGSEGLSDKEESSTTLQLYPSLE 117
Query: 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSV-- 202
L A+ +++ Y+ W + I++ D+ L +V
Sbjct: 118 DLADALLDLLEYYNWTKFAIIYDSDEGLSRLQELL-----------DESGIKGIQVTVRR 166
Query: 203 ---TETDVRNELVKVRMMEARVIVVHGYSRTGL-MVFDVAQRLGMMDSGYVWIATTWLST 258
+ + R L +++ E+R I++ S + + A LGMM GY WI T
Sbjct: 167 LDLDDDNYRQLLKELKRSESRRIILDCSSEEEAKEILEQAVELGMMGYGYHWILTN---- 222
Query: 259 FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTV 318
+D R PDS F+ RW S G YD
Sbjct: 223 -LDLSDIDLEPFQYGPANITGFRLVDPDSPDVSQFLQRWLEESPG----VNLRAPIYD-- 275
Query: 319 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLS 378
A ++D +
Sbjct: 276 ------------------------------------AALLYDAVLLL------------T 287
Query: 379 GPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413
G + F++D + + DII + +++G W+
Sbjct: 288 GTVSFDEDGVRSNFTLDIIELNRSRGWRKVGTWNG 322
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. On the other hand, non-NMDA receptors have faster kinetics, are weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute to several forms of synaptic plasticity and are suggested to play an important role in the development of synaptic pathways. Length = 328 |
| >gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 3e-17
Identities = 63/299 (21%), Positives = 122/299 (40%), Gaps = 16/299 (5%)
Query: 29 VGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGAL 85
+G + G+ R + A ++IN+ +LG RK+ + + D + + + A
Sbjct: 2 IGVLLPLSGPLAALGEPVRNGAELAVEEINAAGGILG-RKIELVVEDTQGDPEAAAAAAR 60
Query: 86 QFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLY 145
+ ++ A++GP S+ +A + +A E VPL+S A P L+ P+ +TAP+D
Sbjct: 61 ELVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQ 120
Query: 146 LMSAIAEMVSYFGWGEVIAIFNDDDQ-GRNGVTALGDKLAEIRCKISYKSALPPDQSVTE 204
+A+A+ ++ G + +AI DD GR A + L ++ ++ + PP
Sbjct: 121 QAAALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGA---- 176
Query: 205 TDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKS 264
TD + K++ + + GY + A+ G+ + + +
Sbjct: 177 TDFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQAREAGL---KVPIVGGDGAAA--PALL 231
Query: 265 PLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIAR 323
L+ A+ +LG D F + + Y AYD V ++A
Sbjct: 232 ELAGDAAEGVLGTTPYAPDDDDPAAAAFFQKAFKAK--YGRPPDSYAAAAYDAVRLLAG 288
|
Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Length = 298 |
| >gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-16
Identities = 74/396 (18%), Positives = 147/396 (37%), Gaps = 61/396 (15%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTL-AIVGPQSAVMA 104
A++ A + +N+DP +L G + D + + ++++ A+ + A +GP
Sbjct: 22 AIQLAVERVNADPNLLPGYDFTFVYLDTECSESVALLAAVDLYWEHNVDAFIGPGCPYAC 81
Query: 105 HVLSHLANELQVPLLSFTALDPTLSPLQ-YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVI 163
++ LA +P++S+ + +LS YP +T P L A+ ++ +F W +
Sbjct: 82 APVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAV 141
Query: 164 AIFNDDDQGRNGVT-ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVI 222
+++DD + AL L E +S+ + + + E+++ +R+I
Sbjct: 142 VVYSDDSENCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLL---EILQDIKRRSRII 198
Query: 223 V--VHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILG---- 276
+ L++ A LG+ YV+I + F S + + G
Sbjct: 199 IMCGSSEDVRELLL--AAHDLGLTSGDYVFI---LIDLFNYSLPYQNSYPWERGDGDDEK 253
Query: 277 -------ALTLRQHTPDSKRRRDFVSRW--------NTLSNGSIGLNPYGLYAYDTVWMI 321
LT+ PD+ +F ++PY Y YD V +
Sbjct: 254 AKEAYDAVLTITLRPPDNPEYEEFSEEVKEAAKRPPFNTDAEPEQVSPYAGYLYDAVLLY 313
Query: 322 ARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPI 381
A AL L +G ++GG + +G++GP+
Sbjct: 314 AHALNETLAEG------------------------GDYNGGLIITRRMWNRTFSGITGPV 349
Query: 382 HF--NQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415
N DR Y ++++ G ++ Y + S
Sbjct: 350 TIDENGDR---EGDYSLLDLDSTGGQLEVVYLYDTS 382
|
Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family. Length = 389 |
| >gnl|CDD|107358 cd06363, PBP1_Taste_receptor, Ligand-binding domain of the T1R taste receptor | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 1e-16
Identities = 59/232 (25%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 45 IAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM---------------- 88
AM+ A ++IN+ +L G L + D + + L +
Sbjct: 46 QAMRFAVEEINNSTSLLPGVTLGYEIFDHCSDS-ANFPPTLSLLSVNGSRIEPQCNYTNY 104
Query: 89 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQTAPNDLYLM 147
+ +A++GP S+ +A ++ L + +P +S+ A LS YP F++T P+D +
Sbjct: 105 QPRVVAVIGPDSSTLALTVAPLFSFFLIPQISYGASSEVLSNKELYPSFLRTVPSDKDQI 164
Query: 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDV 207
A+ +++ FGW V + +DD+ GR+G+ + +A I+Y+ +P D ETD
Sbjct: 165 EAMVQLLQEFGWNWVAFLGSDDEYGRDGLQLFSELIANTGICIAYQGLIPLDTD-PETDY 223
Query: 208 RNELVKVRMMEARVIVVHGYSRTGLMVFD--VAQRLGMMDSGYVWIATT-WL 256
+ L ++ + VIVV + F+ + Q L +G VWIA+ W
Sbjct: 224 QQILKQINQTKVNVIVVFASRQPAEAFFNSVIQQNL----TGKVWIASEAWS 271
|
Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors. Length = 410 |
| >gnl|CDD|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 62/325 (19%), Positives = 120/325 (36%), Gaps = 39/325 (12%)
Query: 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNG-FLSIMGALQ 86
+GAIF + + +A + A D IN++ +L L + + N F A
Sbjct: 1 RIGAIF---DEDARQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACD 57
Query: 87 FMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFT-ALDPTLSPLQYPFFVQTAPNDLY 145
+ AI GP S+ A+ + + + L++P ++ + + +P +
Sbjct: 58 LLSQGVAAIFGPSSSSSANTVQSICDALEIPHITTSWSPNPKPRQFTINLYPSMR----D 113
Query: 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTET 205
L A+ +++ YFGW + + D D+G + L D L+ +++ +
Sbjct: 114 LSDALLDLIKYFGWRKFV-YIYDSDEGLLRLQELLDALSPKGIQVTVRRLDDDTD----- 167
Query: 206 DVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT------WLSTF 259
R L +++ + R I++ + A +GMM Y +I T L F
Sbjct: 168 MYRPLLKEIKREKERRIILDCSPERLKEFLEQAVEVGMMSEYYHYILTNLDFHTLDLELF 227
Query: 260 IDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYG------LY 313
+I G R PD+ + F+ RW + +
Sbjct: 228 RYGGV--------NITG---FRLVDPDNPEVQKFIQRWERSDHRICPGSGLKPIKTESAL 276
Query: 314 AYDTVWMIARALKLFLDQGNTISFS 338
YD V + ++ F + G +F+
Sbjct: 277 TYDAVLLFTGRIQ-FDENGQRSNFT 300
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. Non-NMDA receptors have faster kinetics, are most often only weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute several forms of synaptic plasticity and are thought to play an important role in the development of synaptic pathways. Non-NMDA receptors include alpha-amino-3-hydroxy-5-methyl-4-isoxazole proprionate (AMPA) and kainate receptors. Length = 324 |
| >gnl|CDD|107360 cd06365, PBP1_Pheromone_receptor, Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 5e-14
Identities = 62/282 (21%), Positives = 114/282 (40%), Gaps = 55/282 (19%)
Query: 45 IAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM-------------ETD 91
+A+ A ++IN +P +L L +++ + ++ +L ++
Sbjct: 43 LALLFAIEEINKNPHLLPNISLGFHIYNVLHSDRKALESSLMWLSGEGETIPNYSCRRQR 102
Query: 92 TLAIV--GPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQTAPNDLYLMS 148
V GP A+ A ++ L + P L++ DP LS +Q+P Q AP D L
Sbjct: 103 KSVAVIGGPSWALSA-TIATLLGLYKFPQLTYGPFDPLLSDRVQFPSLYQMAPKDTSLPL 161
Query: 149 AIAEMVSYFGWGEVIAIFNDDDQG------------RNGVTALGDKLAEIRCKISYKSAL 196
+ ++ +F W V + +DDD+G RNG+ C +++ +
Sbjct: 162 GMVSLMLHFSWTWVGLVISDDDRGEQFLSDLREEMQRNGI-----------C-LAFVEKI 209
Query: 197 PPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254
P ++ R E ++M A+VI+++G + + L V + G VWI T+
Sbjct: 210 P--VNMQLYLTRAEKYYNQIMTSSAKVIIIYGDTDSLLEVSFR--LWQYLLIGKVWITTS 265
Query: 255 -W-LSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFV 294
W ++T T S G L H + +DF+
Sbjct: 266 QWDVTTSPKD------FTLNSFHGTLIFSHHHSEIPGFKDFL 301
|
Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors. Length = 469 |
| >gnl|CDD|107377 cd06382, PBP1_iGluR_Kainate, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 76/405 (18%), Positives = 140/405 (34%), Gaps = 94/405 (23%)
Query: 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKL-SITMHDAKFNGFLSIMGALQ 86
+GAIF +G +A + A D IN + +L L + F +
Sbjct: 1 RIGAIFDDDDDSG--EELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCD 58
Query: 87 FMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYL 146
++ AI GP S+ + ++ + + ++P + T DP F + P++ L
Sbjct: 59 LLQQGVAAIFGPSSSEASSIVQSICDAKEIPHIQ-TRWDPE-PKSNRQFTINLYPSNADL 116
Query: 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVT--- 203
A A++V F W I+ + G+ L + L ++ ++T
Sbjct: 117 SRAYADIVKSFNWKSFTIIYESAE----GLLRLQELL---------QAFGISGITITVRQ 163
Query: 204 ---ETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT------ 254
+ D R L +++ I++ + + + AQ++GMM Y +I T
Sbjct: 164 LDDDLDYRPLLKEIKNSGDNRIIIDCSADILIELLKQAQQVGMMSEYYHYIITNLDLHTL 223
Query: 255 WLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYA 314
L + S +I G R PDS ++ +
Sbjct: 224 DLEDYRYSGV--------NITG---FRLVDPDSPEVKEVIRSLEL--------------- 257
Query: 315 YDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNM 374
S+ ++ G T AL ++D +
Sbjct: 258 ---------------------SWDEGCRILPSTGVTT-ESAL-MYDAV----------YL 284
Query: 375 TGLSGPIHFNQD--RSLLHPSYDIINVIEHGYPQQIGYWSNYSGL 417
GL+G I F+ RS D+I + E G +++G W++ GL
Sbjct: 285 FGLTGRIEFDSSGQRSNFT--LDVIELTESGL-RKVGTWNSSEGL 326
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMAP receptors. In contrast of AMPA receptors, kainate receptors play only a minor role in signaling at synapses and their function is not well defined. Length = 327 |
| >gnl|CDD|222144 pfam13458, Peripla_BP_6, Periplasmic binding protein | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 57/305 (18%), Positives = 117/305 (38%), Gaps = 17/305 (5%)
Query: 27 LNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMG 83
+ +G + +G+ SR + A ++IN+ VLG RK+ + + D + + +
Sbjct: 2 IKIGVLTPLSGPYAASGRSSRAGARLAIEEINAAGGVLG-RKIELVVADDQSDPDRAAAA 60
Query: 84 ALQFMETD-TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPN 142
A + ++ D AI G ++ +A ++ + + VPL+ +AL+ P T
Sbjct: 61 ARRLVDQDGVDAIFGGLTSAVALAVAPVLEKKGVPLIGPSALEG---EECSPNVFYTGAT 117
Query: 143 DLYLMSAIAE-MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS 201
+A+ + + G +V I +D GR A L ++ + P
Sbjct: 118 PNQQAAALVDYLAKELGGKKVALIGSDYAFGRELNAAARAALKAAGGEVVGEVYYPLGT- 176
Query: 202 VTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261
TD + +++++ V+++ + A+ G+ G I LS +
Sbjct: 177 ---TDFSSVVLQIKASGPDVVLLTLVGADAVAFIKAAREAGLDPKG---IPLVSLSGYEA 230
Query: 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMI 321
L + A+ + A D+ R FV+ + + AY ++
Sbjct: 231 DLLALGGEAAEGVYTAAPYFP-DLDTPANRAFVAAYKARYGEDAPPTQFAAAAYAAADLL 289
Query: 322 ARALK 326
A AL+
Sbjct: 290 AAALE 294
|
This family includes a diverse range of periplasmic binding proteins. Length = 343 |
| >gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic binding fold superfamily | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-12
Identities = 47/303 (15%), Positives = 91/303 (30%), Gaps = 46/303 (15%)
Query: 28 NVGAIFSFGTVNGQVSRI--AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGAL 85
+G + +++ ++ A ++I GR L + + D++ + ++
Sbjct: 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEI--------GRGLEVILADSQSDPERALEALR 52
Query: 86 QFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLY 145
++ I+GP S+ A + LA +P++S A P L+ YP+ + P++
Sbjct: 53 DLIQQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATAPDLTG--YPYVFRVGPDNEQ 110
Query: 146 LMSAIAEMVSYFGWGEVIAIFNDDD----QGRNGV-TALGDKLAEIRCKISYKSALPPDQ 200
A AE ++ GW V I+ DD + G AL E+
Sbjct: 111 AGEAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDTEKGF 170
Query: 201 SVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260
++ + I A+ G+ I +
Sbjct: 171 QALLQLLKAAP------KPDAIFACNDE-MAAGALKAAREAGLTPGDISIIGFDGSPAAL 223
Query: 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWM 320
+ G T+ Q P + YD V +
Sbjct: 224 LAAGEAG-------PGLTTVAQPFPGDDPD---------------QPDYPAALGYDAVLL 261
Query: 321 IAR 323
R
Sbjct: 262 GVR 264
|
Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The core structures of periplasmic binding proteins are classified into two types, and they differ in number and order of beta strands: type 1 has six beta strands, while type 2 has five beta strands per sub-domain. These two structural folds are thought to be distantly related via a common ancestor. Notably, while the N-terminal LIVBP-like domain of iGluRs belongs to the type 1 periplasmic-binding fold protein superfamily, the glutamate-binding domain of the iGluR is structurally similar to the type 2 periplasmic-binding fold. Length = 269 |
| >gnl|CDD|107362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-12
Identities = 61/330 (18%), Positives = 115/330 (34%), Gaps = 66/330 (20%)
Query: 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTL--SPLQYPFFVQTAPNDLYLMSAIAEMVS 155
+ AV +L + + ++P++ + + + F+QT P+ + E++
Sbjct: 74 DEEAVAQ-ILDFTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPSLEQQADVMLEILE 132
Query: 156 YFGWGEVIAIFNDDDQGRNGVTALGDKLAE--IRCKISYKSALPPDQSVTETDVRNELVK 213
+ W + + + D R+ + + L E + + L + + +L K
Sbjct: 133 EYDWHQFSVVTSRDPGYRDFLDRVETTLEESFVGWEFQLVLTLDLSDDDGDARLLRQLKK 192
Query: 214 VRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKS 273
+ E+RVI+++ +F+ A LG+ GYVWI
Sbjct: 193 L---ESRVILLYCSKEEAERIFEAAASLGLTGPGYVWIVG----------ELA------- 232
Query: 274 ILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGL---NPYGLYAY--DTVWMIARALKLF 328
+ L L G +G+ Y L A D V ++ARA +
Sbjct: 233 LGSGLAPEG-----------------LPVGLLGVGLDTWYSLEARVRDAVAIVARAAESL 275
Query: 329 LDQGNTISFS-----NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHF 383
L + + G L +FL N G +G + F
Sbjct: 276 LRDKGALPEPPVNCYDTANKRESSGQYL-----------ARFLMN---VTFDGETGDVSF 321
Query: 384 NQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413
N+D L +P IIN+ + +++G W N
Sbjct: 322 NEDGYLSNPKLVIINLRRNRKWERVGSWEN 351
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in the treatment of chronic pain. Length = 362 |
| >gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 94 AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQTAPNDLYLMSAIAE 152
A++G + ++ +S + N +P +S+ + LS +++P F++T P+D Y A+A
Sbjct: 106 AVIGAGYSEISMAVSRMLNLQLIPQVSYASTAEILSDKIRFPSFLRTVPSDFYQTKAMAH 165
Query: 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALP---PDQSVTETDVRN 209
++ GW V I DDD GR+ + + I++K LP D + +
Sbjct: 166 LIKKSGWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLSDNTK-LNRIIR 224
Query: 210 ELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLK 269
K+ + E +V V+ ++R VF + + + VWIA+ ST + ++K
Sbjct: 225 TTEKI-IEENKVNVIVVFARQ-FHVFLLFNKAIERNINKVWIASDNWSTAKKILTDPNVK 282
Query: 270 TAKSILG 276
++G
Sbjct: 283 KIGKVVG 289
|
This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. Length = 403 |
| >gnl|CDD|107370 cd06375, PBP1_mGluR_groupII, Ligand binding domain of the group II metabotropic glutamate receptor | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 36/237 (15%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM----------------- 88
AM A D IN+DPR+L G KL + + D ++ +L+F+
Sbjct: 35 AMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYALEQSLEFVRASLTKVDTSEYECPDG 94
Query: 89 -----ETDTLAIVGPQSAVMAHVLSHLANEL---QVPLLSFTALDPTLS-PLQYPFFVQT 139
E LAI G + V +AN L Q+P +S+ + LS +Y +F +T
Sbjct: 95 SYAVQENSPLAIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFART 154
Query: 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIR--C-KISYKSAL 196
P D Y A+AE++ +F W V + ++ D G G+ A ++ A +R C S K
Sbjct: 155 VPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAF-EQEARLRNICIATSEKVGR 213
Query: 197 PPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253
D+ ++ +R L K ARV+V+ S + A+R +++ + W+A+
Sbjct: 214 SADRKSYDSVIRKLLQKP---NARVVVLFTRSEDARELLAAAKR---LNASFTWVAS 264
|
Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 458 |
| >gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQTAPNDLYLMSAI 150
T+A+VG + ++ +++L +P +S+ + LS Q+ F++T PND + +A+
Sbjct: 119 TIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAM 178
Query: 151 AEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNE 210
A+++ YF W V I DDD GR G+ ++ E I + + Q E +++
Sbjct: 179 ADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELI--SQYSDEEEIQRV 236
Query: 211 LVKVRMMEARVIVV 224
+ ++ A+VIVV
Sbjct: 237 VEVIQNSTAKVIVV 250
|
Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calcium metabolism. Additionally, the family C GPCRs includes at least two receptors with broad-spectrum amino acid-sensing properties: GPRC6A which recognizes basic and various aliphatic amino acids, its gold-fish homolog the 5.24 chemoreceptor, and a specific taste receptor (T1R) which responds to aliphatic, polar, charged, and branched amino acids, but not to aromatic amino acids. Length = 510 |
| >gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 65/310 (20%), Positives = 118/310 (38%), Gaps = 20/310 (6%)
Query: 25 EVLNVGAIFSFGTVN---GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSI 81
+ + +G + GQ + + A ++IN+ +LG RK+ + + D + +
Sbjct: 9 DTIKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGGILG-RKVELVVEDDASDPATAA 67
Query: 82 MGALQFMETD-TLAIVGP-QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQY-PFFVQ 138
A + + D A+VGP S V +A E VPL+S +A P L+ P +
Sbjct: 68 AVARKLITQDGVDAVVGPTTSGVALAASP-VAEEAGVPLISPSATAPQLTGRGLKPNVFR 126
Query: 139 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ-GRNGVTALGDKLAEIRCKISYKSALP 197
T P D +A A+ + G + +AI DD G A L + ++ +
Sbjct: 127 TGPTDNQQAAAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYA 186
Query: 198 PDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257
P +TD + K++ ++V GY + A+ G+
Sbjct: 187 P----GDTDFSALVAKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAKLI------GGD 236
Query: 258 TFIDSKSPLSLKTAKSILGALTLRQHTP-DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYD 316
++ + G L TP DS + FV + + + AYD
Sbjct: 237 GAGTAEFEEIAGAGGAGAGLLATAYSTPDDSPANKKFVEAYKAKYGDPAAPSYFAAAAYD 296
Query: 317 TVWMIARALK 326
V ++A+A++
Sbjct: 297 AVKLLAKAIE 306
|
Length = 366 |
| >gnl|CDD|107374 cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 8e-10
Identities = 85/435 (19%), Positives = 166/435 (38%), Gaps = 86/435 (19%)
Query: 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMG 83
P+ +N+GA+ S + Q + A+ AA + + ++ +IT N + +
Sbjct: 17 PKTVNIGAVLS-NKKHEQEFKEAVNAANVERHGSRKIKLNAT-TITH---DPNPIQTALS 71
Query: 84 ALQFMETDTLAIV------GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPFF 136
+ + ++ + V + +S+ A ++P++ + D S + F
Sbjct: 72 VCEQLISNQVYAVIVSHPPTSNDHLTPTSVSYTAGFYRIPVVGISTRDSIFSDKNIHLSF 131
Query: 137 VQTAP-----NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKIS 191
++T P D++L EM+ F W +VI + +DD +GR L E +
Sbjct: 132 LRTVPPYSHQADVWL-----EMLRSFKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFK 186
Query: 192 YKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251
K + E +V + L + + + +RVI++ +++ A L M GYVWI
Sbjct: 187 IKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSASEDDAAVIYRNAGMLNMTGEGYVWI 246
Query: 252 ATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYG 311
+ + + + A G L L+ L NG +
Sbjct: 247 VS---------EQAGAARNAPD--GVLGLQ------------------LINGKNESS--- 274
Query: 312 LYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQ 371
+ D V ++A A++ + I+ G T I++ G F ++
Sbjct: 275 -HIRDAVAVLASAIQELFE-KENITEPP----RECVGNT------VIWETGPLFKRALMS 322
Query: 372 TNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPAN 431
+ G +G + FN D +YDI+N I++ Q+G Y+G + ++
Sbjct: 323 SKYPGETGRVEFNDDGDRKFANYDIMN-IQNRKLVQVG---LYNGDILRLNDR------- 371
Query: 432 RSSSNQHLYSVVWPG 446
S++WPG
Sbjct: 372 ---------SIIWPG 377
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore can be classified as excitatory glycine receptors. NR1/NR3 receptors are calcium-impermeable and unaffected by ligands acting at the NR2 glutamate-binding site. Length = 377 |
| >gnl|CDD|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic glutamate receptors (mGluR) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 44/240 (18%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQF-------------METDT 92
AM A D+IN+DP +L G L + D ++ +L+F + +
Sbjct: 35 AMLFALDEINNDPTLLPGITLGAHILDTCSRDTYALEQSLEFVRASLTKIDDCVYCDGGS 94
Query: 93 L----------AIVGP---QSAVMAHVLSHLANELQ---VPLLSFTALDPTLS-PLQYPF 135
++G ++ AN L+ +P +S+ + P LS +Y +
Sbjct: 95 PPPNNSPKPVAGVIGASYSSVSIQV------ANLLRLFKIPQISYASTSPELSDKTRYDY 148
Query: 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 195
F +T P D + A+ ++V F W V + ++ + G G+ A AE I+
Sbjct: 149 FSRTVPPDSFQAQAMVDIVKAFNWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEK 208
Query: 196 LPPDQSVTETDVRNELVKVRMME---ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252
+P S TE + N +++ +++ ARV+V+ + A+RL + WIA
Sbjct: 209 IP--SSATEEEFDN-IIR-KLLSKPNARVVVLFCREDDIRGLLAAAKRLNAEGH-FQWIA 263
|
Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III. Length = 452 |
| >gnl|CDD|107365 cd06370, PBP1_Speract_GC_like, Ligand-binding domain of membrane bound guanylyl cyclases | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 67/342 (19%), Positives = 128/342 (37%), Gaps = 56/342 (16%)
Query: 38 VNGQVSRI--AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAI 95
+ I A+ A +D+N+DP +L G KL D + LSI + + +A
Sbjct: 14 TDRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTHGDEVLSIRAVSDWWKRGVVAF 73
Query: 96 VGPQSAVMAHVLSH---LANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIA 151
+GP+ + LA +P++S+ + +S +YP F +T P + ++ ++
Sbjct: 74 IGPE-----CTCTTEARLAAAWNLPMISYKCDEEPVSDKSKYPTFARTVPPSIQVVKSVI 128
Query: 152 EMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLA----EIRCKISYKSALPPDQSVTETDV 207
++ +F W + ++ +D + + L ++ I Y PPD +
Sbjct: 129 ALLKHFNWNKFSVVYENDSKYSSVFETLKEEAELRNITISHVEYYADFYPPDP-----IM 183
Query: 208 RNELVKV--RMMEARVIVV---HGYSRTGLMVFDVAQRLGMMDSG-Y--VWIATT----- 254
N + R E I V ++ G+++SG Y + +
Sbjct: 184 DNPFEDIIQRTKETTRIYVFIGEANELRQFLM--SMLDEGLLESGDYMVLGVDIEYYDRD 241
Query: 255 ---WLSTFIDSKSPLSLKT--------AKSILGALTLRQHTPDSKRRRDFVSRWNTL--- 300
+ S +S ++ KS+L + +PD FV ++N
Sbjct: 242 SQDYYSLHRGFQSREYNRSDDEKALEAMKSVL-IIVPTPVSPDYDSFSIFVRKYNLEPPF 300
Query: 301 ------SNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336
S + ++ Y YD V + A+AL L +G I
Sbjct: 301 NGDLGESELVLEIDIEAAYLYDAVMLYAKALDETLLEGGDIY 342
|
Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model. Length = 404 |
| >gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I metabotropic glutamate receptor | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 39/202 (19%), Positives = 86/202 (42%), Gaps = 8/202 (3%)
Query: 94 AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQTAPNDLYLMSAIAE 152
++GP S+ +A + +L +P ++++A LS + +F++ P+D A+ +
Sbjct: 120 GVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYFLRVVPSDTLQARAMLD 179
Query: 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 212
+V + W V A+ + + G +G+ A + A I++ + + D +
Sbjct: 180 IVKRYNWTYVSAVHTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSNAGEQSFDRLLRKL 239
Query: 213 KVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATTWLSTFIDSKSPLSLKTA 271
+ R+ +ARV+V T + +RLG G + I + + D +
Sbjct: 240 RSRLPKARVVVCFCEGMTVRGLLMAMRRLG--VGGEFQLIGSDGWADRDDVVEGYEEEAE 297
Query: 272 KSILGALTLRQHTPDSKRRRDF 293
G +T++ +P+ D+
Sbjct: 298 ----GGITIKLQSPEVPSFDDY 315
|
Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 472 |
| >gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 65/335 (19%), Positives = 132/335 (39%), Gaps = 27/335 (8%)
Query: 93 LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE 152
AI G + L+ ++ L VP ++ + L F +Q P+ L+ A+ +
Sbjct: 64 FAIFGSYDKSSVNTLTSYSDALHVPFITPSFPTNDLDD-GNQFVLQMRPS---LIQALVD 119
Query: 153 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 212
++ ++GW +V+ ++ D D+G + L D L E K +A D E + L
Sbjct: 120 LIEHYGWRKVVYLY-DSDRGLLRLQQLLDYLREKDNKWQV-TARRVDNVTDEEEFLRLLE 177
Query: 213 KV-RMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTA 271
+ R E R+++ R ++ + +G GY +I L+ + +
Sbjct: 178 DLDRRKEKRIVLDCESERLNKILEQIV-DVGKNRKGYHYI----LANL----GFDDIDLS 228
Query: 272 KSILGALTL---RQHTPDSKRRRDFVSRWNTLSNGS---IGLNPYGL---YAYDTVWMIA 322
K + G + + + + + F+ RW L G +P A+D V ++A
Sbjct: 229 KFLFGGVNITGFQLVDNTNPTVQKFLQRWKKLDPREWPGAGTSPIKYTAALAHDAVLVMA 288
Query: 323 RALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIH 382
A + Q + D GG ++ G + + GL+G +
Sbjct: 289 EAFRSLRRQRGSGRHRIDIS-RRGNGGDCLANPAVPWEHGIDIERALKKVQFEGLTGNVQ 347
Query: 383 FNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGL 417
F++ + + D++ ++ +++GYW+ GL
Sbjct: 348 FDEFGQRTNYTLDVVE-LKTRGLRKVGYWNEDDGL 381
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current. Length = 382 |
| >gnl|CDD|107368 cd06373, PBP1_NPR_like, Ligand binding domain of natriuretic peptide receptor (NPR) family | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 16/217 (7%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ-----FMETDTLAIVGPQ- 99
A+ A + +N+DP +L G +++ D++ S A + + A +GP
Sbjct: 23 AIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLYFQHKPDAFLGPGC 82
Query: 100 SAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQTAPNDLYLMSAIAEMVSYFG 158
A V + A VP+L+ A S +Y +T P+ L + + +F
Sbjct: 83 EYAAAPV-ARFAAHWNVPVLTAGAPAAGFSDKSEYSTLTRTGPSYTKLGEFVLALHEHFN 141
Query: 159 WGEVIAIFNDD-DQGRNGVTAL-GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM 216
W +++DD + R L G I+ S P D+ D + L +
Sbjct: 142 WSRAALLYHDDKNDDRPCYFTLEGVYTVLKEENITV-SDFPFDEDKELDDYKELLRDISK 200
Query: 217 MEARVIVVHGYSRT--GLMVFDVAQRLGMMDSGYVWI 251
RV+++ T +M+ A RLG+ YV+
Sbjct: 201 K-GRVVIMCASPDTVREIML--AAHRLGLTSGEYVFF 234
|
Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase. Length = 396 |
| >gnl|CDD|107338 cd06343, PBP1_ABC_ligand_binding_like_8, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 8e-06
Identities = 69/364 (18%), Positives = 130/364 (35%), Gaps = 65/364 (17%)
Query: 40 GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD-TLAIVG- 97
G + R N + GRK+ + + D ++ ++ + +E+D A+VG
Sbjct: 23 GVIGRTGAAYFFMINNDQGGI-NGRKIELIVEDDGYSPPKTVEQTRKLVESDEVFAMVGG 81
Query: 98 ----PQSAVMAHVLSHLANELQVP-LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE 152
AV NE +VP L + P +P+ P+ Y A
Sbjct: 82 LGTPTNLAVQ-----KYLNEKKVPQLFPASGASKWNDPKPFPWTFGWQPS--YQDEARIY 134
Query: 153 ---MVSYFGWGEVIAIFNDDDQGRNGVTA----LGDKLAEIRCKISYKSALPPDQSVTET 205
+V ++ ++ +DD G++ + LGD EI + SY+ VTE
Sbjct: 135 AKYLVEEKPNAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYE--------VTEP 186
Query: 206 DVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSP 265
D +++ K++ A V+V+ + A LG ++ ++ ++ P
Sbjct: 187 DFDSQVAKLKAAGADVVVLATTPKFAAQAIRKAAELGWKP---TFLLSSVSASVASVLKP 243
Query: 266 LSLKTAKSILGALTLRQHT-------PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTV 318
L+ A+ ++ A L+ T P K F ++ + Y +Y Y
Sbjct: 244 AGLEAAEGVIAAAYLKDPTDPAWADDPGVKEFIAFYKKYF---PEGDPPDTYAVYGYAAA 300
Query: 319 WMIARALKL---------FLDQGNTISFSNDTKLNGLGGGTLNLGA----------LSIF 359
+ + LK + Q ++ D + L G +N L F
Sbjct: 301 ETLVKVLKQAGDDLTRENIMKQAESL---KDVLPDLLPGIRINTSPDDHLPIEQMQLMRF 357
Query: 360 DGGK 363
+GG+
Sbjct: 358 EGGR 361
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. Length = 362 |
| >gnl|CDD|107367 cd06372, PBP1_GC_G_like, Ligand-binding domain of membrane guanylyl cyclase G | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 75/344 (21%), Positives = 136/344 (39%), Gaps = 57/344 (16%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTL-AIVGPQSAVMA 104
A++ A D +NSDP LG + T ++ + S+ G + ++ + + A+ GP A
Sbjct: 22 ALQIAMDKVNSDPVYLGNYSMEFTYTNSTCSAKESLAGFIDQVQKEHISALFGPACPEAA 81
Query: 105 HVLSHLANELQVPLLSF----TALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWG 160
V LA++ +P+ F LD + Y +V+ P + + + + +FGW
Sbjct: 82 EVTGLLASQWNIPMFGFVGQTAKLD---NRFLYDTYVKLVPPKQKIGEVLQKSLQHFGW- 137
Query: 161 EVIAIF------NDDDQGRNGVTALGDKLA---EIRCKISYKSALPPDQSVTETDVRNEL 211
+ I +F + D+ A+ ++L I + Y S+ P D+ E
Sbjct: 138 KHIGLFGGSSRDSSWDEVDELWKAVENQLKFHFNITATVRYSSSNP--------DLLQEK 189
Query: 212 VKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA------TTWLSTFIDSKSP 265
++ ARVI++ S + A++LG+M +V+ W D +
Sbjct: 190 LRYISSVARVIILICSSEDAKAILQAAEKLGLMKGKFVFFLLQQFEDNFWKEVLTDDQVQ 249
Query: 266 LSLKTAKSIL-----------GALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYA 314
K +S+ G R+ +R F S ++ S PY Y
Sbjct: 250 HLPKVYESVFLIAPSSYGGYSGGYEFRKQVYQKLKRPPFQSSLSSEEQVS----PYSAYL 305
Query: 315 YDTVWMIARALKLFLDQG----------NTISFSNDTKLNGLGG 348
+D V + A A+K L G +T+ +N +L G+ G
Sbjct: 306 HDAVLLYALAVKEMLKAGKDFRNGRQLVSTLRGANQVELQGITG 349
|
This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle. Length = 391 |
| >gnl|CDD|107335 cd06340, PBP1_ABC_ligand_binding_like_6, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 60/307 (19%), Positives = 114/307 (37%), Gaps = 42/307 (13%)
Query: 40 GQVSRIAMKAAQDDINS--DPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDT-LAIV 96
GQ + + A ++IN+ + LGG KL + D++ N + A + + + +A+V
Sbjct: 16 GQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGDSQGNPDIGATEAERLITEEGVVALV 75
Query: 97 GP-QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS 155
G QSAV S +A VP + A+ +++ + + + P+D +M
Sbjct: 76 GAYQSAV-TLAASQVAERYGVPFVVDGAVSDSITERGFKYTFRITPHDGMF---TRDMFD 131
Query: 156 YFGW-----G---EVIAIF-NDDDQGRNGVTALGDKLA----EIRCKISYKSALPPDQSV 202
+ G + +A+ D + G + A+ EI ISY +
Sbjct: 132 FLKDLNEKTGKPLKTVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPAN------- 184
Query: 203 TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262
D+ +E++K++ I+ Y+ +++ + + + D
Sbjct: 185 -ARDLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQRVEPKAVYSVGGG----AEDP 239
Query: 263 KSPLSL-KTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIG--LNPYGLYAYDTVW 319
+L K A+ IL S + N G L+ AY V
Sbjct: 240 SFVKALGKDAEGILTR------NEWSDPKDPMAKDLNKRFKARFGVDLSGNSARAYTAVL 293
Query: 320 MIARALK 326
+IA AL+
Sbjct: 294 VIADALE 300
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Length = 347 |
| >gnl|CDD|107387 cd06392, PBP1_iGluR_delta_1, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 88/399 (22%), Positives = 159/399 (39%), Gaps = 56/399 (14%)
Query: 29 VGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQF 87
+GAIF + A D++ + +L K++ ++ N F ++ A
Sbjct: 2 IGAIFEENAAKDDRVF---QLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDL 58
Query: 88 METDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLM 147
M LA+V A+ L L + + +P L F + SP + + Y +
Sbjct: 59 MTQGILALVTSTGCASANALQSLTDAMHIPHL-FVQRNSGGSPRTACHLNPSPEGEEYTL 117
Query: 148 SA---------IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPP 198
+A + ++V+ W + I +F D + G+ + D+ + + +S +
Sbjct: 118 AARPPVRLNDVMLKLVTELRWQKFI-VFYDSEYDIRGLQSFLDQASRLGLDVSLQKV--- 173
Query: 199 DQSVTE------TDVRNE-LVKVRMMEARVIVVHGYSRTGLMVF---DVAQRLGMMDSGY 248
D++++ T ++ E L + R R I++ S G F V L DS +
Sbjct: 174 DRNISRVFTNLFTTMKTEELNRYRDTLRRAILL--LSPRGAQTFINEAVETNLASKDSHW 231
Query: 249 VWIATTWLSTFIDSKSPLSLKTAKSILGALT-LRQHTPDSKRRRDFVSRWN-----TLSN 302
V++ T I L+ S LG +T +RQ P SK R N L +
Sbjct: 232 VFVNEEISDTEI-------LELVHSALGRMTVIRQIFPLSKDNNQRCIRNNHRISSLLCD 284
Query: 303 GSIG----LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSI 358
G L LY YD+V M+A A L+ D K + + +
Sbjct: 285 PQEGYLQMLQVSNLYLYDSVLMLANAFHRKLE---------DRKWHSMASLNCIRKSTKP 335
Query: 359 FDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDII 397
++GG+ L I + ++TGL+G + F +D + H ++I+
Sbjct: 336 WNGGRSMLETIKKGHITGLTGVMEFKEDGANPHVQFEIL 374
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdelta1 is expressed in many areas in the developing CNS, including the hippocampus and the caudate putamen. Furthermore, recent studies have shown that the orphan GluRdelta1 plays an essential role in high-frequency hearing and ionic homeostasis in the basal cochlea and that the locus encoding GluRdelta1 may be involved in congenial or acquired high-frequency hearing loss in humans. Length = 400 |
| >gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group III metabotropic glutamate receptor | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQF----METDT--------- 92
AM A D INSDP +L L + D ++ +L F ++ DT
Sbjct: 35 AMLYALDQINSDPDLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGE 94
Query: 93 ----------LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAP 141
+ ++G ++ ++ +++++ Q+P +S+ + P LS +Y FF + P
Sbjct: 95 PPVFVKPEKVVGVIGASASSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVP 154
Query: 142 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179
D + A+ ++V GW V + ++ + G +GV A
Sbjct: 155 PDSFQAQAMVDIVKALGWNYVSTLASEGNYGESGVEAF 192
|
Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 463 |
| >gnl|CDD|107386 cd06391, PBP1_iGluR_delta_2, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 83/390 (21%), Positives = 157/390 (40%), Gaps = 58/390 (14%)
Query: 28 NVGAIF-SFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKL--SITMHDAKFNGFLSIMGA 84
++GAIF + +V R+A+ D+N + +L K+ S+T D N F ++ A
Sbjct: 1 HIGAIFDESAKKDDEVFRMAVA----DLNQNNEILQTEKITVSVTFVDGN-NPFQAVQEA 55
Query: 85 LQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPND- 143
+ M LA+V A L LA+ + +P L F +P ++ ND
Sbjct: 56 CELMNQGILALVSSIGCTSAGSLQSLADAMHIPHL-FIQRSTAGTPRSSCGLTRSNRNDD 114
Query: 144 --------LYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 195
+YL I +V+ + W + I IF D D G+ DK+++ ++ +
Sbjct: 115 YTLSVRPPVYLNDVILRVVTEYAWQKFI-IFYDTDYDIRGIQEFLDKVSQQGMDVALQK- 172
Query: 196 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYS---RTGLMVFDVAQRLGMM----DSGY 248
E ++ N+++ R+ ++ Y R ++V + A + ++
Sbjct: 173 -------VENNI-NKMITGLFRTMRIEELNRYRDTLRRAILVMNPATAKSFITEVVETNL 224
Query: 249 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHT---PDSKRRRDFVSRWNTLSNGSI 305
V W+ + + + +G LT+ + T P + +R F R N + S+
Sbjct: 225 VAFDCHWIIINEEISDMDVQELVRRSIGRLTIIRQTFPLPQNISQRCF--RGNHRISSSL 282
Query: 306 ---------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGAL 356
+ LY YDTV ++A A L+ D K + + +
Sbjct: 283 CDPKDPFAQMMEISNLYIYDTVLLLANAFHKKLE---------DRKWHSMASLSCIRKNS 333
Query: 357 SIFDGGKKFLANILQTNMTGLSGPIHFNQD 386
+ GG+ L I + ++GL+G + FN++
Sbjct: 334 KPWQGGRSMLETIKKGGVSGLTGELEFNEN 363
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as an AMPA-like receptor by mutation analysis. Moreover, targeted disruption of GluRdelta2 gene caused motor coordination impairment, Purkinje cell maturation, and long-term depression of synaptic transmission. It has been suggested that GluRdelta2 is the receptor for cerebellin 1, a glycoprotein of the Clq and tumor necrosis factor family that is secreted from cerebellar granule cells. Length = 400 |
| >gnl|CDD|107388 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 91/420 (21%), Positives = 158/420 (37%), Gaps = 62/420 (14%)
Query: 25 EVLNVGAIFSF--GTVNGQVS--RIAMKAAQDDINSDPRVLGGRKLS-----ITMHDAKF 75
V+ +G IF + G N +S +A + + + IN + +L L+ I HD+
Sbjct: 1 HVIRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDS-- 58
Query: 76 NGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPF 135
F + A + +AI GP + + + N L+VP + L + F
Sbjct: 59 --FEATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDN-KDTF 115
Query: 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 195
+V P+ L AI ++V Y W +++D T L I Y
Sbjct: 116 YVNLYPDYASLSHAILDLVQYLKWRSATVVYDD-------STGLIRLQELIMAPSRYNIR 168
Query: 196 LPPDQSVTETDVRNELVK--VRMMEARVIVVHGYSRTGLMVFDVAQRL---GMMDSGYVW 250
L Q T++D L+K R E R+I + + M + ++ GMM Y +
Sbjct: 169 LKIRQLPTDSDDARPLLKEMKRGREFRII----FDCSHQMAAQILKQAMAMGMMTEYYHF 224
Query: 251 IATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPY 310
I TT L + P S + R D+ V +W+ +
Sbjct: 225 IFTT-LDLYALDLEPYRY----SGVNLTGFRILNVDNPHVSSIVEKWSMERLQAAPKPET 279
Query: 311 GL----------YAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFD 360
GL YD V M++ + + ++ + +L +
Sbjct: 280 GLLDGVMMTDAALLYDAVHMVSVCYQ----RAPQMTVN-----------SLQCHRHKAWR 324
Query: 361 GGKKFLANILQTNMTGLSGPIHFNQDRSLLHP-SYDIINVIEHGYPQQIGYWSNYSGLSV 419
G +F+ I + GL+G I FN+ L DII++ E G +++G W+ +GL++
Sbjct: 325 FGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGL-EKVGVWNPNTGLNI 383
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMAP receptors. In contrast of AMPA receptors, kainate receptors play only a minor role in signaling at synapses and their function is not well defined. Length = 384 |
| >gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 28 NVGAIFSFGTVNGQVSRI------AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSI 81
+GAI S + G + + ++ D+IN+ +GG K+ + + D + ++
Sbjct: 1 KIGAILS---LTGPAASLGIPEKKTLELLPDEINAG--GIGGEKVELIVLDDGSDPTKAV 55
Query: 82 MGALQFMETDTL-AIVGPQ--SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQ 138
A + +E D + AI+GP A MA V +A E + P++S + P + + +
Sbjct: 56 TNARKLIEEDKVDAIIGPSTTPATMA-VAP-VAEEAKTPMISLAPAAAIVEPKR-KWVFK 112
Query: 139 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPP 198
T ND + AI + G V I D G +G+ L LA Y +
Sbjct: 113 TPQNDRLMAEAILADMKKRGVKTVAFIGFSDAYGESGLKEL-KALAP-----KYGIEVVA 166
Query: 199 DQSV--TETDVRNELVKVRMMEARVIVVHG 226
D+ T+T V +L+K+R +++ G
Sbjct: 167 DERYGRTDTSVTAQLLKIRAARPDAVLIWG 196
|
This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however. Length = 312 |
| >gnl|CDD|107378 cd06383, PBP1_iGluR_AMPA_Like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 38/175 (21%)
Query: 98 PQSAVMAHVLSHLANELQVPLLSFT--ALDPTLS-------PLQYPFFVQTAPNDLYLMS 148
V+ A+E++ S T PT S L+ P+ +Q P ++
Sbjct: 67 VPHLVLDTTTCGDASEIK----SVTGALGIPTFSASYGQEGDLEQPYLIQLMPPADDIVE 122
Query: 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTET--- 205
AI ++VSY+ +++DD YKS L +
Sbjct: 123 AIRDIVSYYNITNAAILYDDD-------------FVMD---HKYKSLLQNWPTRHVITII 166
Query: 206 -----DVRNELVKVRMMEARVIVVHG-YSRTGLMVFDVAQRLGMMDSGYVWIATT 254
+VR ++ ++R ++ + I + G V D A G M Y W
Sbjct: 167 NSIIDEVREQIKRLRNLDIKNIFILGSTEEIIRYVLDQALAEGFMGRKYAWFLGN 221
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current. Length = 368 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| KOG1054 | 897 | consensus Glutamate-gated AMPA-type ion channel re | 100.0 | |
| cd06365 | 469 | PBP1_Pheromone_receptor Ligand-binding domain of t | 100.0 | |
| cd06374 | 472 | PBP1_mGluR_groupI Ligand binding domain of the gro | 100.0 | |
| cd06375 | 458 | PBP1_mGluR_groupII Ligand binding domain of the gr | 100.0 | |
| cd06364 | 510 | PBP1_CaSR Ligand-binding domain of the CaSR calciu | 100.0 | |
| cd06362 | 452 | PBP1_mGluR Ligand binding domain of the metabotrop | 100.0 | |
| cd06392 | 400 | PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v | 100.0 | |
| cd06376 | 463 | PBP1_mGluR_groupIII Ligand-binding domain of the g | 100.0 | |
| KOG4440 | 993 | consensus NMDA selective glutamate-gated ion chann | 100.0 | |
| cd06393 | 384 | PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol | 100.0 | |
| cd06390 | 364 | PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin | 100.0 | |
| cd06361 | 403 | PBP1_GPC6A_like Ligand-binding domain of the promi | 100.0 | |
| cd06387 | 372 | PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin | 100.0 | |
| cd06379 | 377 | PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/ | 100.0 | |
| cd06391 | 400 | PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v | 100.0 | |
| cd06388 | 371 | PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin | 100.0 | |
| KOG1056 | 878 | consensus Glutamate-gated metabotropic ion channel | 100.0 | |
| cd06380 | 382 | PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali | 100.0 | |
| cd06389 | 370 | PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin | 100.0 | |
| cd06367 | 362 | PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali | 100.0 | |
| cd06386 | 387 | PBP1_NPR_C_like Ligand-binding domain of type C na | 100.0 | |
| cd06363 | 410 | PBP1_Taste_receptor Ligand-binding domain of the T | 100.0 | |
| cd06372 | 391 | PBP1_GC_G_like Ligand-binding domain of membrane g | 100.0 | |
| cd06385 | 405 | PBP1_NPR_A Ligand-binding domain of type A natriur | 100.0 | |
| cd06370 | 404 | PBP1_Speract_GC_like Ligand-binding domain of memb | 100.0 | |
| cd06366 | 350 | PBP1_GABAb_receptor Ligand-binding domain of GABAb | 100.0 | |
| KOG1053 | 1258 | consensus Glutamate-gated NMDA-type ion channel re | 100.0 | |
| cd06373 | 396 | PBP1_NPR_like Ligand binding domain of natriuretic | 100.0 | |
| cd06352 | 389 | PBP1_NPR_GC_like Ligand-binding domain of membrane | 100.0 | |
| cd06394 | 333 | PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu | 100.0 | |
| cd06371 | 382 | PBP1_sensory_GC_DEF_like Ligand-binding domain of | 100.0 | |
| cd06384 | 399 | PBP1_NPR_B Ligand-binding domain of type B natriur | 100.0 | |
| cd06382 | 327 | PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v | 100.0 | |
| PF01094 | 348 | ANF_receptor: Receptor family ligand binding regio | 100.0 | |
| cd06368 | 324 | PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu | 100.0 | |
| cd06381 | 363 | PBP1_iGluR_delta_like N-terminal leucine/isoleucin | 100.0 | |
| cd06377 | 382 | PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/ | 100.0 | |
| PRK15404 | 369 | leucine ABC transporter subunit substrate-binding | 100.0 | |
| cd06342 | 334 | PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind | 100.0 | |
| cd06383 | 368 | PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine | 100.0 | |
| cd06378 | 362 | PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/ | 100.0 | |
| cd06350 | 348 | PBP1_GPCR_family_C_like Ligand-binding domain of m | 100.0 | |
| cd06345 | 344 | PBP1_ABC_ligand_binding_like_10 Type I periplasmic | 100.0 | |
| cd06338 | 345 | PBP1_ABC_ligand_binding_like_5 Type I periplasmic | 100.0 | |
| cd06346 | 312 | PBP1_ABC_ligand_binding_like_11 Type I periplasmic | 100.0 | |
| cd06348 | 344 | PBP1_ABC_ligand_binding_like_13 Type I periplasmic | 100.0 | |
| cd06340 | 347 | PBP1_ABC_ligand_binding_like_6 Type I periplasmic | 100.0 | |
| cd06351 | 328 | PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc | 100.0 | |
| cd06355 | 348 | PBP1_FmdD_like Periplasmic component (FmdD) of an | 100.0 | |
| cd06344 | 332 | PBP1_ABC_ligand_binding_like_9 Type I periplasmic | 100.0 | |
| COG0683 | 366 | LivK ABC-type branched-chain amino acid transport | 100.0 | |
| cd06347 | 334 | PBP1_ABC_ligand_binding_like_12 Type I periplasmic | 100.0 | |
| TIGR03669 | 374 | urea_ABC_arch urea ABC transporter, substrate-bind | 100.0 | |
| cd06329 | 342 | PBP1_SBP_like_3 Periplasmic solute-binding domain | 100.0 | |
| cd06331 | 333 | PBP1_AmiC_like Type I periplasmic components of am | 100.0 | |
| cd06343 | 362 | PBP1_ABC_ligand_binding_like_8 Type I periplasmic | 100.0 | |
| cd06349 | 340 | PBP1_ABC_ligand_binding_like_14 Type I periplasmic | 100.0 | |
| cd06330 | 346 | PBP1_Arsenic_SBP_like Periplasmic solute-binding d | 100.0 | |
| cd06327 | 334 | PBP1_SBP_like_1 Periplasmic solute-binding domain | 100.0 | |
| TIGR03407 | 359 | urea_ABC_UrtA urea ABC transporter, urea binding p | 100.0 | |
| cd06359 | 333 | PBP1_Nba_like Type I periplasmic binding component | 100.0 | |
| cd06336 | 347 | PBP1_ABC_ligand_binding_like_3 Type I periplasmic | 100.0 | |
| PF13458 | 343 | Peripla_BP_6: Periplasmic binding protein; PDB: 4E | 100.0 | |
| cd06360 | 336 | PBP1_alkylbenzenes_like Type I periplasmic binding | 100.0 | |
| cd06357 | 360 | PBP1_AmiC Periplasmic binding domain of amidase (A | 100.0 | |
| cd06328 | 333 | PBP1_SBP_like_2 Periplasmic solute-binding domain | 100.0 | |
| cd06335 | 347 | PBP1_ABC_ligand_binding_like_2 Type I periplasmic | 100.0 | |
| KOG1055 | 865 | consensus GABA-B ion channel receptor subunit GABA | 100.0 | |
| cd06356 | 334 | PBP1_Amide_Urea_BP_like Periplasmic component (Fmd | 100.0 | |
| cd06334 | 351 | PBP1_ABC_ligand_binding_like_1 Type I periplasmic | 100.0 | |
| cd06358 | 333 | PBP1_NHase Type I periplasmic-binding protein of t | 100.0 | |
| cd06332 | 333 | PBP1_aromatic_compounds_like Type I periplasmic bi | 100.0 | |
| PF13433 | 363 | Peripla_BP_5: Periplasmic binding protein domain; | 99.97 | |
| cd06337 | 357 | PBP1_ABC_ligand_binding_like_4 Type I periplasmic | 99.97 | |
| cd06269 | 298 | PBP1_glutamate_receptors_like Family C G-protein c | 99.97 | |
| cd06326 | 336 | PBP1_STKc_like Type I periplasmic binding domain o | 99.97 | |
| cd06339 | 336 | PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin | 99.96 | |
| cd06369 | 380 | PBP1_GC_C_enterotoxin_receptor Ligand-binding doma | 99.96 | |
| cd04509 | 299 | PBP1_ABC_transporter_GCPR_C_like Family C of G-pro | 99.96 | |
| TIGR03863 | 347 | PQQ_ABC_bind ABC transporter, substrate binding pr | 99.96 | |
| cd06341 | 341 | PBP1_ABC_ligand_binding_like_7 Type I periplasmic | 99.95 | |
| cd06333 | 312 | PBP1_ABC-type_HAAT_like Type I periplasmic binding | 99.95 | |
| KOG1052 | 656 | consensus Glutamate-gated kainate-type ion channel | 99.94 | |
| cd06268 | 298 | PBP1_ABC_transporter_LIVBP_like Periplasmic bindin | 99.94 | |
| cd01391 | 269 | Periplasmic_Binding_Protein_Type_1 Type 1 periplas | 99.66 | |
| PF10613 | 65 | Lig_chan-Glu_bd: Ligated ion channel L-glutamate- | 99.6 | |
| PF04348 | 536 | LppC: LppC putative lipoprotein; InterPro: IPR0074 | 99.3 | |
| cd01537 | 264 | PBP1_Repressors_Sugar_Binding_like Ligand-binding | 98.91 | |
| cd01536 | 267 | PBP1_ABC_sugar_binding_like Periplasmic sugar-bind | 98.78 | |
| cd06300 | 272 | PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi | 98.71 | |
| cd06267 | 264 | PBP1_LacI_sugar_binding_like Ligand binding domain | 98.69 | |
| PRK11917 | 259 | bifunctional adhesin/ABC transporter aspartate/glu | 98.66 | |
| cd06325 | 281 | PBP1_ABC_uncharacterized_transporter Type I peripl | 98.63 | |
| PRK10797 | 302 | glutamate and aspartate transporter subunit; Provi | 98.61 | |
| cd06320 | 275 | PBP1_allose_binding Periplasmic allose-binding dom | 98.57 | |
| PRK15010 | 260 | ABC transporter lysine/arginine/ornithine binding | 98.55 | |
| PRK15007 | 243 | putative ABC transporter arginine-biding protein; | 98.54 | |
| PRK15437 | 259 | histidine ABC transporter substrate-binding protei | 98.53 | |
| PRK09495 | 247 | glnH glutamine ABC transporter periplasmic protein | 98.5 | |
| TIGR03870 | 246 | ABC_MoxJ methanol oxidation system protein MoxJ. T | 98.46 | |
| COG2984 | 322 | ABC-type uncharacterized transport system, peripla | 98.45 | |
| PRK10653 | 295 | D-ribose transporter subunit RbsB; Provisional | 98.43 | |
| PF00497 | 225 | SBP_bac_3: Bacterial extracellular solute-binding | 98.41 | |
| cd06282 | 266 | PBP1_GntR_like_2 Ligand-binding domain of putative | 98.38 | |
| TIGR01096 | 250 | 3A0103s03R lysine-arginine-ornithine-binding perip | 98.35 | |
| COG3107 | 604 | LppC Putative lipoprotein [General function predic | 98.32 | |
| cd06323 | 268 | PBP1_ribose_binding Periplasmic sugar-binding doma | 98.31 | |
| cd06273 | 268 | PBP1_GntR_like_1 This group includes the ligand-bi | 98.27 | |
| PRK11260 | 266 | cystine transporter subunit; Provisional | 98.24 | |
| cd06317 | 275 | PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi | 98.2 | |
| cd06319 | 277 | PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b | 98.2 | |
| cd06310 | 273 | PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi | 98.17 | |
| PRK10859 | 482 | membrane-bound lytic transglycosylase F; Provision | 98.13 | |
| cd06312 | 271 | PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi | 98.12 | |
| cd06305 | 273 | PBP1_methylthioribose_binding_like Methylthioribos | 98.12 | |
| cd06301 | 272 | PBP1_rhizopine_binding_like Periplasmic binding pr | 98.09 | |
| TIGR02995 | 275 | ectoine_ehuB ectoine/hydroxyectoine ABC transporte | 98.07 | |
| cd01545 | 270 | PBP1_SalR Ligand-binding domain of DNA transcripti | 98.07 | |
| COG0834 | 275 | HisJ ABC-type amino acid transport/signal transduc | 98.06 | |
| cd06309 | 273 | PBP1_YtfQ_like Periplasmic binding domain of ABC-t | 98.05 | |
| PRK10936 | 343 | TMAO reductase system periplasmic protein TorT; Pr | 98.03 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 97.99 | |
| PF13407 | 257 | Peripla_BP_4: Periplasmic binding protein domain; | 97.94 | |
| cd06298 | 268 | PBP1_CcpA_like Ligand-binding domain of the catabo | 97.94 | |
| cd06284 | 267 | PBP1_LacI_like_6 Ligand-binding domain of an uncha | 97.94 | |
| PRK10355 | 330 | xylF D-xylose transporter subunit XylF; Provisiona | 97.93 | |
| cd06289 | 268 | PBP1_MalI_like Ligand-binding domain of MalI, a tr | 97.87 | |
| cd06303 | 280 | PBP1_LuxPQ_Quorum_Sensing Periplasmic binding prot | 97.87 | |
| TIGR02285 | 268 | conserved hypothetical protein. Members of this fa | 97.87 | |
| PRK09701 | 311 | D-allose transporter subunit; Provisional | 97.87 | |
| cd01540 | 289 | PBP1_arabinose_binding Periplasmic L-arabinose-bin | 97.78 | |
| cd06275 | 269 | PBP1_PurR Ligand-binding domain of purine represso | 97.77 | |
| cd01539 | 303 | PBP1_GGBP Periplasmic glucose/galactose-binding pr | 97.77 | |
| cd06321 | 271 | PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b | 97.76 | |
| TIGR01481 | 329 | ccpA catabolite control protein A. Catabolite cont | 97.75 | |
| cd06271 | 268 | PBP1_AglR_RafR_like Ligand-binding domain of DNA t | 97.75 | |
| cd06322 | 267 | PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b | 97.73 | |
| cd06288 | 269 | PBP1_sucrose_transcription_regulator Ligand-bindin | 97.73 | |
| cd01575 | 268 | PBP1_GntR Ligand-binding domain of DNA transcripti | 97.71 | |
| cd06311 | 274 | PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi | 97.71 | |
| PF00532 | 279 | Peripla_BP_1: Periplasmic binding proteins and sug | 97.68 | |
| PRK15395 | 330 | methyl-galactoside ABC transporter galactose-bindi | 97.67 | |
| cd06293 | 269 | PBP1_LacI_like_11 Ligand-binding domain of unchara | 97.67 | |
| cd06308 | 270 | PBP1_sensor_kinase_like Periplasmic binding domain | 97.62 | |
| cd06295 | 275 | PBP1_CelR Ligand binding domain of a transcription | 97.6 | |
| cd01542 | 259 | PBP1_TreR_like Ligand-binding domain of DNA transc | 97.6 | |
| cd06270 | 268 | PBP1_GalS_like Ligand binding domain of DNA transc | 97.6 | |
| cd06324 | 305 | PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b | 97.58 | |
| cd01538 | 288 | PBP1_ABC_xylose_binding Periplasmic xylose-binding | 97.58 | |
| COG1609 | 333 | PurR Transcriptional regulators [Transcription] | 97.57 | |
| cd06283 | 267 | PBP1_RegR_EndR_KdgR_like Ligand-binding domain of | 97.57 | |
| cd06281 | 269 | PBP1_LacI_like_5 Ligand-binding domain of uncharac | 97.56 | |
| cd01574 | 264 | PBP1_LacI Ligand-binding domain of DNA transcripti | 97.55 | |
| cd06306 | 268 | PBP1_TorT-like TorT-like proteins, a periplasmic b | 97.54 | |
| cd06285 | 265 | PBP1_LacI_like_7 Ligand-binding domain of uncharac | 97.53 | |
| PRK10703 | 341 | DNA-binding transcriptional repressor PurR; Provis | 97.53 | |
| PRK10014 | 342 | DNA-binding transcriptional repressor MalI; Provis | 97.51 | |
| COG1879 | 322 | RbsB ABC-type sugar transport system, periplasmic | 97.5 | |
| cd06274 | 264 | PBP1_FruR Ligand binding domain of DNA transcripti | 97.5 | |
| cd06316 | 294 | PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi | 97.49 | |
| cd06296 | 270 | PBP1_CatR_like Ligand-binding domain of a LacI-lik | 97.48 | |
| PRK11303 | 328 | DNA-binding transcriptional regulator FruR; Provis | 97.47 | |
| cd06290 | 265 | PBP1_LacI_like_9 Ligand-binding domain of uncharac | 97.47 | |
| cd06299 | 265 | PBP1_LacI_like_13 Ligand-binding domain of DNA-bin | 97.46 | |
| cd06278 | 266 | PBP1_LacI_like_2 Ligand-binding domain of uncharac | 97.46 | |
| PRK15408 | 336 | autoinducer 2-binding protein lsrB; Provisional | 97.45 | |
| PRK10423 | 327 | transcriptional repressor RbsR; Provisional | 97.39 | |
| cd06318 | 282 | PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi | 97.38 | |
| cd06294 | 270 | PBP1_ycjW_transcription_regulator_like Ligand-bind | 97.36 | |
| TIGR02417 | 327 | fruct_sucro_rep D-fructose-responsive transcriptio | 97.36 | |
| smart00062 | 219 | PBPb Bacterial periplasmic substrate-binding prote | 97.36 | |
| cd06292 | 273 | PBP1_LacI_like_10 Ligand-binding domain of unchara | 97.33 | |
| cd06277 | 268 | PBP1_LacI_like_1 Ligand-binding domain of uncharac | 97.33 | |
| cd06314 | 271 | PBP1_tmGBP Periplasmic sugar-binding domain of The | 97.32 | |
| cd00134 | 218 | PBPb Bacterial periplasmic transport systems use m | 97.31 | |
| cd06286 | 260 | PBP1_CcpB_like Ligand-binding domain of a novel tr | 97.28 | |
| cd06280 | 263 | PBP1_LacI_like_4 Ligand-binding domain of uncharac | 97.28 | |
| cd06313 | 272 | PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi | 97.27 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 97.26 | |
| PRK10727 | 343 | DNA-binding transcriptional regulator GalR; Provis | 97.25 | |
| cd06307 | 275 | PBP1_uncharacterized_sugar_binding Periplasmic sug | 97.24 | |
| cd06291 | 265 | PBP1_Qymf_like Ligand binding domain of the lacI-l | 97.23 | |
| cd01541 | 273 | PBP1_AraR Ligand-binding domain of DNA transcripti | 97.19 | |
| cd06272 | 261 | PBP1_hexuronate_repressor_like Ligand-binding doma | 97.18 | |
| PF04392 | 294 | ABC_sub_bind: ABC transporter substrate binding pr | 97.18 | |
| TIGR02955 | 295 | TMAO_TorT TMAO reductase system periplasmic protei | 97.15 | |
| TIGR03871 | 232 | ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa | 97.15 | |
| cd06302 | 298 | PBP1_LsrB_Quorum_Sensing Periplasmic binding domai | 97.14 | |
| cd06304 | 260 | PBP1_BmpA_like Periplasmic binding component of a | 97.13 | |
| cd06354 | 265 | PBP1_BmpA_PnrA_like Periplasmic binding domain of | 97.13 | |
| cd06297 | 269 | PBP1_LacI_like_12 Ligand-binding domain of unchara | 97.11 | |
| PRK09526 | 342 | lacI lac repressor; Reviewed | 97.02 | |
| cd06279 | 283 | PBP1_LacI_like_3 Ligand-binding domain of uncharac | 96.98 | |
| PRK14987 | 331 | gluconate operon transcriptional regulator; Provis | 96.97 | |
| cd01543 | 265 | PBP1_XylR Ligand-binding domain of DNA transcripti | 96.92 | |
| PRK11041 | 309 | DNA-binding transcriptional regulator CytR; Provis | 96.89 | |
| PRK10401 | 346 | DNA-binding transcriptional regulator GalS; Provis | 96.88 | |
| PRK09492 | 315 | treR trehalose repressor; Provisional | 96.87 | |
| TIGR02634 | 302 | xylF D-xylose ABC transporter, substrate-binding p | 96.57 | |
| cd01544 | 270 | PBP1_GalR Ligand-binding domain of DNA transcripti | 96.28 | |
| TIGR02405 | 311 | trehalos_R_Ecol trehalose operon repressor, proteo | 96.09 | |
| COG4623 | 473 | Predicted soluble lytic transglycosylase fused to | 95.77 | |
| cd06353 | 258 | PBP1_BmpA_Med_like Periplasmic binding domain of t | 95.48 | |
| cd06315 | 280 | PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-bi | 95.32 | |
| TIGR02637 | 302 | RhaS rhamnose ABC transporter, rhamnose-binding pr | 94.62 | |
| TIGR02990 | 239 | ectoine_eutA ectoine utilization protein EutA. Mem | 94.42 | |
| cd06287 | 269 | PBP1_LacI_like_8 Ligand-binding domain of uncharac | 94.38 | |
| PRK10339 | 327 | DNA-binding transcriptional repressor EbgR; Provis | 92.9 | |
| COG4213 | 341 | XylF ABC-type xylose transport system, periplasmic | 92.5 | |
| COG1744 | 345 | Med Uncharacterized ABC-type transport system, per | 92.41 | |
| COG1454 | 377 | EutG Alcohol dehydrogenase, class IV [Energy produ | 90.38 | |
| TIGR00035 | 229 | asp_race aspartate racemase. | 89.83 | |
| PF03808 | 172 | Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp | 89.7 | |
| cd06276 | 247 | PBP1_FucR_like Ligand-binding domain of a transcri | 89.62 | |
| TIGR01098 | 254 | 3A0109s03R phosphate/phosphite/phosphonate ABC tra | 89.57 | |
| PF13377 | 160 | Peripla_BP_3: Periplasmic binding protein-like dom | 89.47 | |
| PRK09860 | 383 | putative alcohol dehydrogenase; Provisional | 88.96 | |
| COG3473 | 238 | Maleate cis-trans isomerase [Secondary metabolites | 88.41 | |
| PRK15454 | 395 | ethanol dehydrogenase EutG; Provisional | 88.2 | |
| cd08190 | 414 | HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv | 87.61 | |
| PRK10624 | 382 | L-1,2-propanediol oxidoreductase; Provisional | 87.35 | |
| cd08192 | 370 | Fe-ADH7 Iron-containing alcohol dehydrogenases-lik | 87.2 | |
| cd06353 | 258 | PBP1_BmpA_Med_like Periplasmic binding domain of t | 86.58 | |
| cd08193 | 376 | HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze | 86.46 | |
| KOG3857 | 465 | consensus Alcohol dehydrogenase, class IV [Energy | 85.65 | |
| cd08551 | 370 | Fe-ADH iron-containing alcohol dehydrogenases (Fe- | 85.46 | |
| cd08189 | 374 | Fe-ADH5 Iron-containing alcohol dehydrogenases-lik | 85.0 | |
| TIGR02638 | 379 | lactal_redase lactaldehyde reductase. This clade o | 84.97 | |
| cd06533 | 171 | Glyco_transf_WecG_TagA The glycosyltransferase Wec | 84.66 | |
| cd08194 | 375 | Fe-ADH6 Iron-containing alcohol dehydrogenases-lik | 84.56 | |
| PRK10200 | 230 | putative racemase; Provisional | 84.4 | |
| PF00465 | 366 | Fe-ADH: Iron-containing alcohol dehydrogenase ; In | 83.76 | |
| cd08188 | 377 | Fe-ADH4 Iron-containing alcohol dehydrogenases-lik | 81.94 | |
| cd08185 | 380 | Fe-ADH1 Iron-containing alcohol dehydrogenases-lik | 81.93 | |
| PF12683 | 275 | DUF3798: Protein of unknown function (DUF3798); In | 81.9 | |
| cd08181 | 357 | PPD-like 1,3-propanediol dehydrogenase-like (PPD). | 80.98 |
| >KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=418.06 Aligned_cols=471 Identities=17% Similarity=0.254 Sum_probs=382.4
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCC-CceEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCC
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLG-GRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQ 99 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~-g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~ 99 (549)
..+..|.||++|+.+. .+...|+++|+...|....--+ -.+|.+++.... .++...+.+.|+.+++||.||+|.+
T Consensus 22 ~f~~tiqigglF~~n~---~qe~~Afr~~~~~~~~~~~~~~~pf~L~~~~d~~e~a~Sf~~tnafCsq~s~Gv~Aifg~y 98 (897)
T KOG1054|consen 22 AFPNTIQIGGLFPRNT---DQEHSAFRFAVQLYNTNQNTTEKPFKLNPHVDNLESANSFAVTNAFCSQFSRGVYAIFGFY 98 (897)
T ss_pred cCCCceeeccccCCcc---hHHHHHHHHHHHHhhcCCCCCCCCcccccccchhhhhhhHHHHHHHHHHHhhhHhhheecc
Confidence 5888999999999986 4667899999988886432110 144555544322 5788999999999999999999999
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l 179 (549)
.......+.++|+.+++|+|+++. |. +...++.+++.|+ +..++++++.|++|.++.++| |.+.|...++.+
T Consensus 99 d~ks~~~ltsfc~aLh~~~vtpsf--p~--~~~~~Fviq~RP~---l~~al~s~i~hy~W~~fv~ly-D~~rg~s~Lqai 170 (897)
T KOG1054|consen 99 DKKSVNTLTSFCGALHVSFVTPSF--PT--DGDNQFVIQMRPA---LKGALLSLIDHYKWEKFVYLY-DTDRGLSILQAI 170 (897)
T ss_pred cccchhhhhhhccceeeeeecccC--Cc--CCCceEEEEeCch---HHHHHHHHHHhcccceEEEEE-cccchHHHHHHH
Confidence 999999999999999999999743 22 2234788999997 458999999999999999999 455788899999
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccc
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 259 (549)
.+.+.++++.|.....-.+ .+...++.+++.+.....+.|+++|..+....++.++.+.+-...+|||++.+.....
T Consensus 171 ~~~a~~~nw~VtA~~v~~~---~d~~~yr~~f~~l~~r~e~rv~iDce~~~~~~il~q~i~~~k~~~~YHYvlaNl~f~d 247 (897)
T KOG1054|consen 171 MEAAAQNNWQVTAINVGNI---NDVKEYRMLFEMLDRRQENRVLIDCESERRNRILLQVIELGKHVKGYHYVLANLGFTD 247 (897)
T ss_pred HHHHHhcCceEEEEEcCCc---ccHHHHHHHHHHHhccccceEEEEcccHHHHHHHHHHHHHhhhccceEEEEeeCCCch
Confidence 9999999999988654332 3456699999999988899999999999999999999998888899999999876655
Q ss_pred cCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcC------CCCCCCchhhhHhHHHHHHHHHHHHHHhcCC
Q 008904 260 IDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSN------GSIGLNPYGLYAYDTVWMIARALKLFLDQGN 333 (549)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~------~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~ 333 (549)
.+. +.......++.+|+..+.+.|..++|.++|+.... ...++...+++.|||+.++++|++.+.++..
T Consensus 248 ~dl-----~~f~~g~aNitgFqivn~~~~~~~k~~~~~~~l~~~~~~g~~~~~~k~tsAlthDailV~~eaf~~~~~q~~ 322 (897)
T KOG1054|consen 248 IDL-----ERFQHGGANITGFQIVNKNNPMVKKFIQRWKELDEREYPGASNDPIKYTSALTHDAILVMAEAFRSLRRQRI 322 (897)
T ss_pred hhH-----HHHhcCCcceeEEEEecCCChHHHHHHHHHhhhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhhh
Confidence 554 34556778899999999999999999999986542 2246677889999999999999999887654
Q ss_pred CccccCCccccCCCCCccccCC--ccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEe
Q 008904 334 TISFSNDTKLNGLGGGTLNLGA--LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 411 (549)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w 411 (549)
... ..|...+|.. ..+|.+|..+.++|+++.++|+||+|+||..|.|++.+.+|+++..++. .++|.|
T Consensus 323 ~~~---------rRG~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGniqFd~~G~R~Nyt~~i~elk~~~~-rk~~~W 392 (897)
T KOG1054|consen 323 DIS---------RRGNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNIQFDKYGRRTNYTIDIVELKSNGS-RKVGYW 392 (897)
T ss_pred chh---------ccCCCccccCCCCCchhcchhHHHHHHheeecccccceeecccCccccceEEEEEeccCCc-ceeeee
Confidence 322 2355567764 5689999999999999999999999999999999999999999998887 999999
Q ss_pred eCCCCCcccCCcccccCCCCCCCCcccceeeEeCCCCcCCCccccccCCCCeEEEeecCcccccccE---EeecCcceee
Q 008904 412 SNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFV---FKVNGTDIVH 488 (549)
Q Consensus 412 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~ 488 (549)
+...|+.....+. +.. .+. ....+++.+|.+..+.||.+.. ..++|+++|+
T Consensus 393 ~e~~~fv~~~t~a-------------~~~------------~d~-~~~~n~tvvvttiL~spyvm~kkn~~~~egn~ryE 446 (897)
T KOG1054|consen 393 NEGEGFVPGSTVA-------------QSR------------NDQ-ASKENRTVVVTTILESPYVMLKKNHEQLEGNERYE 446 (897)
T ss_pred cccCceeeccccc-------------ccc------------ccc-cccccceEEEEEecCCchhHHHhhHHHhcCCcccc
Confidence 9988765432210 000 000 0113577888877766776543 2357899999
Q ss_pred eeeHHHHHHHHHhCCCCcCEEEEECCCCC-----CCCC-hHHHHHhHhcCcccEEecceEEeecccC
Q 008904 489 GYCIDVFLAAVRLLPYAVPYKFIPYGDGH-----KNPT-YSELINQITTGVSRILTKKVAQLTRVSL 549 (549)
Q Consensus 489 G~~idl~~~~~~~l~~~~~~~~~~~~dg~-----~~g~-~~gl~~~l~~~~~d~~~~~~ti~~~r~~ 549 (549)
||||||+.+||+..+++ |++..++||+ .|++ ||||||+|.+|+||+||++||||-+||.
T Consensus 447 GyCvdLa~~iAkhi~~~--Y~l~iv~dgkyGardaD~k~WnGMvGeLv~grAdiavApLTIt~~REe 511 (897)
T KOG1054|consen 447 GYCVDLAAEIAKHIGIK--YKLFIVGDGKYGARDADTKIWNGMVGELVYGRADIAVAPLTITLVREE 511 (897)
T ss_pred eeHHHHHHHHHHhcCce--EEEEEecCCcccccCCCcccccchhHHHhcCccceEEeeeeeehhhhh
Confidence 99999999999999999 9999999998 5677 9999999999999999999999999983
|
|
| >cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=425.74 Aligned_cols=368 Identities=23% Similarity=0.337 Sum_probs=304.5
Q ss_pred ceEEEEEEeccCC----------------------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHH
Q 008904 25 EVLNVGAIFSFGT----------------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82 (549)
Q Consensus 25 ~~i~IG~l~~~~~----------------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~ 82 (549)
|+|.||++||.|. ..|.+...|+.+|+++||+++.+|||++|++.++|+|+++..+++
T Consensus 1 Gdi~igglf~vh~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Am~~Ai~~IN~~~~lLp~~~Lg~~i~dtc~~~~~a~~ 80 (469)
T cd06365 1 GDLVIGGFFPLYTLSGPFETDDWHPFSADLDFRLLLKNYQHVLALLFAIEEINKNPHLLPNISLGFHIYNVLHSDRKALE 80 (469)
T ss_pred CCeeEeceEEEEEeccccccccccCccccccccccchhhHHHHHHHHHHHHHhCCCCCCCCceEEEEEECCCCccHHHHH
Confidence 5799999999972 125567899999999999999999999999999999999999999
Q ss_pred HHHHHHh--------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHH
Q 008904 83 GALQFME--------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLM 147 (549)
Q Consensus 83 ~~~~l~~--------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~ 147 (549)
.+.+++. .+++|+|||.+|..+.+++++++.++||+|+++++++.+++ .+|||+||+.|++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~C~~~~~vvavIG~~~S~~s~~va~i~~~~~IP~Is~~sts~~lsd~~~yp~ffRt~psd~~q~ 160 (469)
T cd06365 81 SSLMWLSGEGETIPNYSCRRQRKSVAVIGGPSWALSATIATLLGLYKFPQLTYGPFDPLLSDRVQFPSLYQMAPKDTSLP 160 (469)
T ss_pred HHHHHHhCCCcccCCccCCCCCceEEEEcCCccHHHHHHHHHhhhhcccceeeccCCccccchhhCCcceEecCCchhHH
Confidence 9999985 36999999999999999999999999999999999999998 57999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.++++++++|+|++|++|+.+++||....+.|.+.+++.|+||+..+.++........++..++++++++++|+||+++.
T Consensus 161 ~ai~~li~~f~W~~Vaiv~~d~~yg~~~~~~~~~~~~~~gi~I~~~~~i~~~~~~~~~~~~~~l~~i~~~~arvIvl~~~ 240 (469)
T cd06365 161 LGMVSLMLHFSWTWVGLVISDDDRGEQFLSDLREEMQRNGICLAFVEKIPVNMQLYLTRAEKYYNQIMTSSAKVIIIYGD 240 (469)
T ss_pred HHHHHHHHhcCCeEEEEEEecChhHHHHHHHHHHHHHHCCeEEEEEEEecCCchhhHHHHHHHHHHhhcCCCeEEEEEcC
Confidence 99999999999999999999999999999999999999999999988887651111247888999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHH-----------
Q 008904 228 SRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR----------- 296 (549)
Q Consensus 228 ~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~----------- 296 (549)
.+.+..++.++.+.+. .+++||+++.|....... ....+.+.|++++.++.+..+.+++|++.
T Consensus 241 ~~~~~~l~~~~~~~~~--~~~~wi~s~~w~~~~~~~----~~~~~~~~G~lg~~~~~~~~~~f~~fl~~l~~~~~~~npw 314 (469)
T cd06365 241 TDSLLEVSFRLWQYLL--IGKVWITTSQWDVTTSPK----DFTLNSFHGTLIFSHHHSEIPGFKDFLQTVNPSKYPEDIF 314 (469)
T ss_pred cHHHHHHHHHHHHhcc--CceEEEeecccccccccc----ccccceeeEEEEEEeccCcCcchHHHhhccCcccCCCccH
Confidence 8888777666655543 569999998876433221 22346789999999998888888877643
Q ss_pred ----HHhhcCCC----------C-----C------------CCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccC
Q 008904 297 ----WNTLSNGS----------I-----G------------LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 345 (549)
Q Consensus 297 ----~~~~~~~~----------~-----~------------~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~ 345 (549)
|+..|++. . . ....+.++||||+++|||||++++|+...
T Consensus 315 ~~efwe~~f~c~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~v~dAVya~AhALh~~l~c~~~~---------- 384 (469)
T cd06365 315 LEKLWWIYFNCSLSKSSCKTLKNCLSNASLEWLPLHYFDMAMSEESYNVYNAVYAVAHALHEMLLQQVET---------- 384 (469)
T ss_pred HHhhHhHhcCcccCcCCccccCCCCCCccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHhhccC----------
Confidence 66555321 0 0 12246779999999999999999886532
Q ss_pred CCCCccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCCCCCceEEEEEee----CceeeEEeEeeC
Q 008904 346 LGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE----HGYPQQIGYWSN 413 (549)
Q Consensus 346 ~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r~~~~~~I~~~~~----~~~~~~VG~w~~ 413 (549)
.+..+|.. ... .+++|+++|++++|.|.+| .|.||+||++ ...|+|+|++. ...+++||.|++
T Consensus 385 --~~~~~~~~-~~~-~~~~l~~~l~~v~F~~~~g~~v~Fd~nGd~-~~~YdI~n~q~~~~~~~~~~~VG~~~~ 452 (469)
T cd06365 385 --QSENNGKR-LIF-LPWQLHSFLKNIQFKNPAGDEVNLNQKRKL-DTEYDILNYWNFPQGLGLKVKVGEFSP 452 (469)
T ss_pred --CCcCCCCC-CCc-cHHHHHHHHHhccccCCCCCEEEecCCCCc-CceeeEEEEEECCCCCEEEEEEEEEeC
Confidence 11234433 334 3889999999999999999 5999999996 68999999983 234699999985
|
Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors. |
| >cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-52 Score=425.18 Aligned_cols=376 Identities=20% Similarity=0.312 Sum_probs=311.5
Q ss_pred CCCceEEEEEEeccCC-----------------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFGT-----------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGA 84 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-----------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~ 84 (549)
..+|+|.||++||.|. ..|.+...|+.+|+|+||++++||||++|++.++|+|+++..|++.+
T Consensus 5 ~~~Gd~~igglfpvh~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~ 84 (472)
T cd06374 5 RMDGDIIIGALFSVHHQPAAEKVPERKCGEIREQYGIQRVEAMFHTLDRINADPVLLPNITLGCEIRDSCWHSSVALEQS 84 (472)
T ss_pred EecCCEEEEEEEecccccccCCCCCCCccccCcchhHHHHHHHHHHHHHHhCCcccCCCceeccEEEEcCCCchHHHHHH
Confidence 5789999999999983 13567789999999999999999999999999999999999999999
Q ss_pred HHHHh--------------------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceE
Q 008904 85 LQFME--------------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFV 137 (549)
Q Consensus 85 ~~l~~--------------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~ 137 (549)
.+++. .+|.|||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+|
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~aiiGp~~S~~~~ava~~~~~~~iP~Is~~ats~~ls~~~~~p~~f 164 (472)
T cd06374 85 IEFIRDSLISIRDEKDGVNPDGQSPGPNKSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLFKYFL 164 (472)
T ss_pred HHHHhhcccccccccccccccCCCcccccCCCCeEEEECCCcchHHHHHHHHhhhhcccccccccCchhhcccccCCceE
Confidence 99885 27999999999999999999999999999999999999988 4799999
Q ss_pred EccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC
Q 008904 138 QTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM 217 (549)
Q Consensus 138 r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~ 217 (549)
|+.|++..++.++++++++|+|++|++||++++||....+.|.+.+++.|+||+....++.. ....++..++.+|++.
T Consensus 165 Rt~p~d~~~~~al~~l~~~~~W~~Vaii~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~--~~~~d~~~~l~~lk~~ 242 (472)
T cd06374 165 RVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSN--AGEQSFDRLLRKLRSR 242 (472)
T ss_pred EcCCChHHHHHHHHHHHHHCCCcEEEEEEecchHHHHHHHHHHHHHHHCCeeEEEEEEecCC--CchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999988777543 3467899999999965
Q ss_pred --CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHH-
Q 008904 218 --EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFV- 294 (549)
Q Consensus 218 --~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~- 294 (549)
+++||++++....+..++++++++|+. .+++||+++.|....... ........|.+++.+..+..+.+++|+
T Consensus 243 ~~da~vvv~~~~~~~~~~~l~~a~~~g~~-~~~~wi~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~~~~F~~~l~ 317 (472)
T cd06374 243 LPKARVVVCFCEGMTVRGLLMAMRRLGVG-GEFQLIGSDGWADRDDVV----EGYEEEAEGGITIKLQSPEVPSFDDYYL 317 (472)
T ss_pred CCCcEEEEEEechHHHHHHHHHHHHhcCC-CceEEEEecccccchHhh----hcchhhhheeEEEEecCCCCccHHHHHH
Confidence 566777778888899999999999986 568999999776431111 123456789999998888777777754
Q ss_pred --------------HHHHhhcCCCC-----C-------------------CCchhhhHhHHHHHHHHHHHHHHhcCCCcc
Q 008904 295 --------------SRWNTLSNGSI-----G-------------------LNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (549)
Q Consensus 295 --------------~~~~~~~~~~~-----~-------------------~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 336 (549)
+.|+..|++.. . ...+++++|||||++|+|||+++.+.+..
T Consensus 318 ~l~~~~~~~~~~~~~~w~~~f~c~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~vyDAVyaiA~ALh~~~~~~~~~- 396 (472)
T cd06374 318 KLRPETNTRNPWFREFWQHRFQCRLPGHPQENPNYIKICTGNESLDEQYVQDSKMGFVINAIYAMAHGLHNMHQDLCPG- 396 (472)
T ss_pred hCCcccCCCChHHHHHHHHhcCCCcCCccCcCCccCCCCCCcccccccccccceeHHHHHHHHHHHHHHHHHHHhhCCC-
Confidence 45666654321 0 01345689999999999999998655321
Q ss_pred ccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCCCCCceEEEEEee----CceeeEEeEe
Q 008904 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE----HGYPQQIGYW 411 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r~~~~~~I~~~~~----~~~~~~VG~w 411 (549)
....|...... ++..|.++|++++|+|++| +|.||++|++. ..|+|+|++. ...+++||.|
T Consensus 397 ------------~~~~c~~~~~~-~~~~l~~~l~~v~F~g~tG~~v~Fd~~G~~~-~~ydI~n~~~~~~~~~~~~~VG~w 462 (472)
T cd06374 397 ------------HVGLCDAMKPI-DGRKLLEYLLKTSFSGVSGEEVYFDENGDSP-GRYDIMNLQYTEDLRFDYINVGSW 462 (472)
T ss_pred ------------CCCCCcCCCCC-CHHHHHHHHHhCcccCCCCCeEEEcCCCCCC-CceEEEEEEECCCCCEEEEEEEEE
Confidence 11246543333 5999999999999999999 79999999975 6899999994 2235999999
Q ss_pred eCCCCCccc
Q 008904 412 SNYSGLSVV 420 (549)
Q Consensus 412 ~~~~~l~~~ 420 (549)
++. +|.++
T Consensus 463 ~~~-~l~~~ 470 (472)
T cd06374 463 HEG-DLGID 470 (472)
T ss_pred eCC-ccccc
Confidence 853 66553
|
Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. |
| >cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-52 Score=420.50 Aligned_cols=365 Identities=22% Similarity=0.339 Sum_probs=309.5
Q ss_pred ceEEEEEEeccCC-------------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh--
Q 008904 25 EVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-- 89 (549)
Q Consensus 25 ~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-- 89 (549)
|+|.||++||.|. ..|.+...|+.+|+++||+++++|||++|++.++|+|+++..+++.+.+++.
T Consensus 1 Gd~~igglFp~h~~~~~~~~C~~~~~~~g~~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~ 80 (458)
T cd06375 1 GDLVLGGLFPVHEKGEGTEECGRINEDRGIQRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYALEQSLEFVRAS 80 (458)
T ss_pred CCEEEEEEEEeeeCCCCCCCCcCccccchHHHHHHHHHHHHHHhCCCCCCCCceeccEEEecCCCcHHHHHHHHHHHhhh
Confidence 5799999999983 3477889999999999999999999999999999999999999999988873
Q ss_pred -----------------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHH
Q 008904 90 -----------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLY 145 (549)
Q Consensus 90 -----------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~ 145 (549)
.+|.|||||.+|..+.+++++++.++||+|+++++++.+++ .+|||+||+.|++..
T Consensus 81 ~~~~~~~~~~C~~~~~~~~~~~~~~V~aVIG~~~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~ 160 (458)
T cd06375 81 LTKVDTSEYECPDGSYAVQENSPLAIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFY 160 (458)
T ss_pred hhcccccccccccCCccccccCCCCeEEEEcCCCchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcHH
Confidence 27999999999999999999999999999999999999998 579999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEE
Q 008904 146 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVV 224 (549)
Q Consensus 146 ~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil 224 (549)
++.++++++++|+|++|++||++++||+...+.|.+.+++.|+||+..+.++.. ....++..+++++++ .++++||+
T Consensus 161 qa~ai~~ll~~~~W~~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~--~~~~d~~~~l~~l~~~~~a~vVvl 238 (458)
T cd06375 161 QAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVGRS--ADRKSYDSVIRKLLQKPNARVVVL 238 (458)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEecCC--CCHHHHHHHHHHHhccCCCEEEEE
Confidence 999999999999999999999999999999999999999999999988878754 446789999999875 68999999
Q ss_pred EcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHH---------
Q 008904 225 HGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVS--------- 295 (549)
Q Consensus 225 ~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~--------- 295 (549)
++...++..++++|.++|+. +.||+++.|....... ........|++++.+.....+.|++|++
T Consensus 239 ~~~~~~~~~ll~~a~~~g~~---~~wigs~~~~~~~~~~----~~~~~~~~G~i~~~~~~~~i~~f~~yl~~l~p~~~~~ 311 (458)
T cd06375 239 FTRSEDARELLAAAKRLNAS---FTWVASDGWGAQESIV----KGSEDVAEGAITIELASHPIPDFDRYFQSLTPETNTR 311 (458)
T ss_pred ecChHHHHHHHHHHHHcCCc---EEEEEeccccccchhh----hccchhhceEEEEEeccccchhHHHHHHhCCcCcCCC
Confidence 99999999999999999975 8999999886432111 1123567899999999888888887764
Q ss_pred ------HHHhhcCCCC----------------------CCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCC
Q 008904 296 ------RWNTLSNGSI----------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLG 347 (549)
Q Consensus 296 ------~~~~~~~~~~----------------------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~ 347 (549)
.|+..|++.. .....+.++||||+++|||||+++++++..
T Consensus 312 n~w~~e~w~~~f~c~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~~AVyA~AhaLh~~l~~~c~~------------ 379 (458)
T cd06375 312 NPWFKDFWEQKFQCSLQNRDCANTTTNDKERLLDKVNYEQESKIMFVVNAVYAMAHALHNMQRDLCPN------------ 379 (458)
T ss_pred CcHHHHHHHHHcCCCCCCCCccCCCCCchhcccccCcccccchHHHHHHHHHHHHHHHHHHHHhcCCC------------
Confidence 4766665221 113457889999999999999999765431
Q ss_pred CCccccCCccccCchHHHH-HHHHhcccc-----ccce-eeEEccCCCCCCCceEEEEEee--C---ceeeEEeEeeC
Q 008904 348 GGTLNLGALSIFDGGKKFL-ANILQTNMT-----GLSG-PIHFNQDRSLLHPSYDIINVIE--H---GYPQQIGYWSN 413 (549)
Q Consensus 348 ~~~~~c~~~~~~~~~~~l~-~~l~~~~f~-----g~tG-~v~fd~~g~r~~~~~~I~~~~~--~---~~~~~VG~w~~ 413 (549)
....|.....++ +++|+ ++|++++|. |.+| +|.||++|+. ...|+|+|++. + ..+++||.|+.
T Consensus 380 -~~~~c~~~~~~~-~~~l~~~~L~~v~F~~~~~~~~~g~~v~Fd~nGd~-~~~YdI~n~q~~~~~~~~~~~~VG~w~~ 454 (458)
T cd06375 380 -TTKLCDAMKPLD-GKKLYKEYLLNVSFTAPFRPDLADSEVKFDSQGDG-LGRYNIFNYQRTGNSYGYRYVGVGAWAN 454 (458)
T ss_pred -CCCCCCCCCCCC-HHHHHHHHHHhccccccccCCCCCCeeEECCCCCC-CcceEEEEEEEcCCCCcEEEEEEEEEec
Confidence 113576655564 88999 599999999 9988 6999999995 68999999983 2 23589999964
|
Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes |
| >cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=420.21 Aligned_cols=374 Identities=21% Similarity=0.297 Sum_probs=311.1
Q ss_pred CCCceEEEEEEeccCC----------------------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHH
Q 008904 22 LKPEVLNVGAIFSFGT----------------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFL 79 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~----------------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~ 79 (549)
..+|+|.||++||.|. ..|.+...|+.+|+++||+++++||+++|++.++|+|+++..
T Consensus 8 ~~~Gd~~igglFpvh~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~~am~~AieeIN~~~~lLp~i~Lg~~i~Dtc~~~~~ 87 (510)
T cd06364 8 QKKGDIILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRWLQAMIFAIEEINNSPTLLPNITLGYRIFDTCNTVSK 87 (510)
T ss_pred eecCCEEEEEEEECcccccccccccccCCCCCcccccChhhHHHHHHHHHHHHHHhCCCccCCCCEEeEEEEccCCchHH
Confidence 5789999999999984 236778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-------------------CcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEc
Q 008904 80 SIMGALQFMET-------------------DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQT 139 (549)
Q Consensus 80 a~~~~~~l~~~-------------------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~ 139 (549)
+++.+.+++.+ +|.|||||.+|..+.+++++++.++||+|+++++++.+++ ..||++||+
T Consensus 88 a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~v~aVIG~~sS~~s~ava~~~~~~~IP~IS~~sss~~ls~~~~yp~ffRt 167 (510)
T cd06364 88 ALEATLSFVAQNKIDSLNLDEFCNCSEHIPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRT 167 (510)
T ss_pred HHHHHHHHHhcccccccccccccccCCCCCceEEEECCCchhHHHHHHHHhccccccccccccCCcccCCccccCCeeEc
Confidence 99999999764 2469999999999999999999999999999999999988 579999999
Q ss_pred cCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCC
Q 008904 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEA 219 (549)
Q Consensus 140 ~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 219 (549)
.|++..++.++++++++|+|++|++|+.+++||+...+.|.+.+++.|+||+..+.++.. ....++..++.+++++++
T Consensus 168 ~psd~~q~~Ai~~l~~~f~wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~--~~~~d~~~~l~klk~~~a 245 (510)
T cd06364 168 IPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQY--SDEEEIQRVVEVIQNSTA 245 (510)
T ss_pred CCChHHHHHHHHHHHHHcCCeEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCC--CCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999988777653 347789999999999999
Q ss_pred eEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHH----
Q 008904 220 RVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVS---- 295 (549)
Q Consensus 220 ~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~---- 295 (549)
++||+++...++..++++|+++|+. +++||+++.|........ ......+.|++++.+.....+.+++|++
T Consensus 246 ~vVvl~~~~~~~~~ll~qa~~~g~~--~~iwI~s~~w~~~~~~~~---~~~~~~~gg~lg~~~~~~~i~~f~~~l~~l~p 320 (510)
T cd06364 246 KVIVVFSSGPDLEPLIKEIVRRNIT--GKIWLASEAWASSSLIAM---PEYFDVMGGTIGFALKAGQIPGFREFLQKVHP 320 (510)
T ss_pred eEEEEEeCcHHHHHHHHHHHHhCCC--CcEEEEEchhhccccccc---CCccceeeEEEEEEECCCcCccHHHHHHhCCc
Confidence 9999999999999999999999975 579999987764322211 1234678889999888777776666553
Q ss_pred -----------HHHhhcCCCC-----C---------------------------------------------CCchhhhH
Q 008904 296 -----------RWNTLSNGSI-----G---------------------------------------------LNPYGLYA 314 (549)
Q Consensus 296 -----------~~~~~~~~~~-----~---------------------------------------------~~~~~~~~ 314 (549)
.|+..|++.. . ....+..+
T Consensus 321 ~~~~~~~~~~~~we~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~v 400 (510)
T cd06364 321 KKSSHNGFAKEFWEETFNCYLEDSPKNALPVDTFLGHEESGDDSENGSTAFRPLCTGDENIASVETPYLDYTHLRISYNV 400 (510)
T ss_pred ccCCCChHHHHHHHHhcCCCCCCCcccccccccccccccccccccccccccCCCCCChhhhcccCCccccccchhhHHHH
Confidence 3666554220 0 01224669
Q ss_pred hHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCCCCCc
Q 008904 315 YDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPS 393 (549)
Q Consensus 315 yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r~~~~ 393 (549)
|||||++|||||+++.|..... ..+...|......+ +++|+++|++++|.|.+| .|.||++|+. ...
T Consensus 401 ~~AVyAvAhaLh~~~~c~~~~~----------~~~~~~c~~~~~~~-~~~l~~~L~~v~F~~~~g~~v~Fd~~Gd~-~~~ 468 (510)
T cd06364 401 YLAVYSIAHALQDIYTCTPGKG----------LFTNGSCADIKKVE-AWQVLKHLRHLNFTDNMGEQVRFDEGGDL-VGN 468 (510)
T ss_pred HHHHHHHHHHHHHHhcCCCCCC----------CccCCCCCCCCCCC-HHHHHHHHHhcEEecCCCCEEEEecCCCC-ccc
Confidence 9999999999999998753210 00113576644454 889999999999999998 6999999995 689
Q ss_pred eEEEEEee---Cc--eeeEEeEeeCC
Q 008904 394 YDIINVIE---HG--YPQQIGYWSNY 414 (549)
Q Consensus 394 ~~I~~~~~---~~--~~~~VG~w~~~ 414 (549)
|+|+|++. ++ .+++||.|++.
T Consensus 469 YdI~n~q~~~~~~~~~~v~VG~~~~~ 494 (510)
T cd06364 469 YSIINWHLSPEDGSVVFKEVGYYNVY 494 (510)
T ss_pred eeEEEeeecCCCCcEEEEEEEEEcCC
Confidence 99999983 22 35899999853
|
Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci |
| >cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=419.59 Aligned_cols=372 Identities=22% Similarity=0.335 Sum_probs=308.9
Q ss_pred ceEEEEEEeccCC-------------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh--
Q 008904 25 EVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-- 89 (549)
Q Consensus 25 ~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-- 89 (549)
|++.||++||.|. ..|.....|+++|+++||+++++|||++|++.++|+|+++..+++.+.+++.
T Consensus 1 Gd~~igglfp~h~~~~~~~~c~~~~~~~G~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~a~~~a~~li~~~ 80 (452)
T cd06362 1 GDIILGGLFPVHSKGTGGEPCGEIKEQRGIQRLEAMLFALDEINNDPTLLPGITLGAHILDTCSRDTYALEQSLEFVRAS 80 (452)
T ss_pred CCeEEEEEEecccCCCCCCCCcCccccchHHHHHHHHHHHHHhhCCCCCCCCCeeCcEEEEeCCCchHHHHHHHHHHhhh
Confidence 5799999999983 2466779999999999999999999999999999999999999999988874
Q ss_pred ---------------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHH
Q 008904 90 ---------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLM 147 (549)
Q Consensus 90 ---------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~ 147 (549)
.+|.+||||.+|..+.++++++..+++|+|+++++++.+++ ..|||+||+.|++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~aviG~~~S~~~~av~~~~~~~~ip~Is~~sts~~ls~~~~~~~~fR~~p~d~~~~ 160 (452)
T cd06362 81 LTKIDDCVYCDGGSPPPNNSPKPVAGVIGASYSSVSIQVANLLRLFKIPQISYASTSPELSDKTRYDYFSRTVPPDSFQA 160 (452)
T ss_pred hhcCCccccccCCCcccccCCCCeEEEECCCCCchHHHHHHHhccccCcccccccCchhhccccccCCEEEecCChHHHH
Confidence 38999999999999999999999999999999999999987 57999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHG 226 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~ 226 (549)
.++++++++|+|++|++|+++++||....+.|.+.+++.|+||+..+.++.. ....++..++++|++ .++++||+++
T Consensus 161 ~a~~~~l~~~~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~~~--~~~~d~~~~l~~l~~~~~a~viil~~ 238 (452)
T cd06362 161 QAMVDIVKAFNWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIPSS--ATEEEFDNIIRKLLSKPNARVVVLFC 238 (452)
T ss_pred HHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcCCC--CCHHHHHHHHHHHhhcCCCeEEEEEc
Confidence 9999999999999999999999999999999999999999999988877754 357899999999987 5799999999
Q ss_pred chHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHH------------
Q 008904 227 YSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFV------------ 294 (549)
Q Consensus 227 ~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~------------ 294 (549)
...++..++++|+++|+. .++.||.++.|....... ........|++++.+.....+.+++|+
T Consensus 239 ~~~~~~~~~~~a~~~g~~-~~~~~i~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~i~~f~~~l~~l~~~~~~~~~ 313 (452)
T cd06362 239 REDDIRGLLAAAKRLNAE-GHFQWIASDGWGARNSVV----EGLEDVAEGAITIELQSAEVPGFDEYFLSLTPENNSRNP 313 (452)
T ss_pred ChHHHHHHHHHHHHcCCc-CceEEEEeccccccchhh----cccccccceEEEEEecccccccHHHHhhhCCcCcCCCCh
Confidence 999999999999999987 568999998775432110 122356788888877766555555433
Q ss_pred ---HHHHhhcCCC----------------------CCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCC
Q 008904 295 ---SRWNTLSNGS----------------------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGG 349 (549)
Q Consensus 295 ---~~~~~~~~~~----------------------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~ 349 (549)
+.|+..+++. .....+++++||||+++|+|||+++.+++...
T Consensus 314 ~~~~~w~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~vyDAV~a~A~AL~~~l~~~~~~~------------- 380 (452)
T cd06362 314 WFREFWEQKFNCKLTGNGSTKDNTCCTERILLLSNYEQESKVQFVIDAVYAMAHALHNMHRDLCPGT------------- 380 (452)
T ss_pred HHHHHHHHhcCCCcCCCCccccCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHhhCCCC-------------
Confidence 3455444321 01234778899999999999999987653211
Q ss_pred ccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCCCCCceEEEEEee---CceeeEEeEeeCCCCCc
Q 008904 350 TLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE---HGYPQQIGYWSNYSGLS 418 (549)
Q Consensus 350 ~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r~~~~~~I~~~~~---~~~~~~VG~w~~~~~l~ 418 (549)
...|.... |.++++|.++|++++|.|++| +|.||++|+| ...|+|++++. ...+++||.|++..||+
T Consensus 381 ~~~c~~~~-~~~~~~l~~~l~~v~f~g~tg~~v~Fd~~G~~-~~~y~I~~~~~~~~~~~~~~VG~w~~~~~~~ 451 (452)
T cd06362 381 TGLCDAMK-PIDGRKLLFYLRNVSFSGLAGGPVRFDANGDG-PGRYDIFNYQRTNGKYDYVKVGSWKGELSLN 451 (452)
T ss_pred CCCCcCcc-CCCHHHHHHHHHhCCcCCCCCceEEECCCCCC-CCceEEEEEEEcCCceEEEEEEEEecccccC
Confidence 12365433 445999999999999999998 7999999997 46999999984 23459999999876653
|
Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III. |
| >cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-51 Score=399.08 Aligned_cols=363 Identities=20% Similarity=0.327 Sum_probs=290.2
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEE-ecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITM-HDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~-~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+||+..+ ...+.||++|++++|.+..++++.+|.+++ .++.+|++.+.+++|++++++|.|||||.++..+..
T Consensus 1 ~iG~if~~~~---~~~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~~~gV~AI~Gp~s~~~a~~ 77 (400)
T cd06392 1 HIGAIFEENA---AKDDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDLMTQGILALVTSTGCASANA 77 (400)
T ss_pred CeeeccCCCc---hHHHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHHHHHHHhcCeEEEECCCchhHHHH
Confidence 4899999865 356899999999999999999999999999 888899999999999999999999999999999999
Q ss_pred HHHhhhhcCCcEEecccC-----------CCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccch
Q 008904 107 LSHLANELQVPLLSFTAL-----------DPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~-----------~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~ 175 (549)
++++|+.++||+|+++.. +|.++..+ |.+.+.|+ ..+.+|+++++.+|+|++|++|| |+++|...
T Consensus 78 v~sic~~l~VP~is~~~~~~~~~~~~~~~~p~~~~~~--~~~~lrp~-~~~~~Ai~dlV~~~~W~~v~~iY-D~d~gl~~ 153 (400)
T cd06392 78 LQSLTDAMHIPHLFVQRNSGGSPRTACHLNPSPEGEE--YTLAARPP-VRLNDVMLKLVTELRWQKFIVFY-DSEYDIRG 153 (400)
T ss_pred HHHHhccCcCCcEeecccccccccccccCCCCcCcCc--eeEEecCc-hHHHHHHHHHHHhCCCcEEEEEE-ECcccHHH
Confidence 999999999999998552 23333334 44556665 56788999999999999999999 78899999
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC-------CeEEEEEcchHHHHHHHHHHHHcCCCCCCe
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-------ARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-------~~viil~~~~~~~~~il~~a~~~g~~~~~~ 248 (549)
++.|.+.+.+.+..|.... +... ....+.+.++.++... -++||++|+++.+..+|++|.++||+..+|
T Consensus 154 lq~L~~~~~~~~~~I~~~~-v~~~---~~~~~~~~l~~~~~~~L~~~~~~~r~iVv~~s~~~~~~il~qA~~lgM~~~~y 229 (400)
T cd06392 154 LQSFLDQASRLGLDVSLQK-VDRN---ISRVFTNLFTTMKTEELNRYRDTLRRAILLLSPRGAQTFINEAVETNLASKDS 229 (400)
T ss_pred HHHHHHHHhhcCceEEEEE-cccC---cchhhhhHHHHHHHhhhhhccccceEEEEEcCcHHHHHHHHHHHHhCcccCCe
Confidence 9999999999999888654 2211 0112333344433322 489999999999999999999999999999
Q ss_pred EEEEeCCcccccCCCCcCChhhHhhcc-ceEEEeEecCCChhHHHHH----HHHHhhcCC---C--CCCCchhhhHhHHH
Q 008904 249 VWIATTWLSTFIDSKSPLSLKTAKSIL-GALTLRQHTPDSKRRRDFV----SRWNTLSNG---S--IGLNPYGLYAYDTV 318 (549)
Q Consensus 249 ~~i~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~f~----~~~~~~~~~---~--~~~~~~~~~~yDav 318 (549)
+||++++.....+. .+...... ++++++.+.+......+|. .+|++.... . ..+..+++++||||
T Consensus 230 ~wI~t~~~~~~~dl-----~~~~~g~~~niT~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~aalayDaV 304 (400)
T cd06392 230 HWVFVNEEISDTEI-----LELVHSALGRMTVIRQIFPLSKDNNQRCIRNNHRISSLLCDPQEGYLQMLQVSNLYLYDSV 304 (400)
T ss_pred EEEEecCCcccccH-----HHHhcccccceeeEEEecCCcHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHH
Confidence 99999987765444 23444444 5677998877776554443 566543321 1 14678899999999
Q ss_pred HHHHHHHHHHHhcCCCccccCCccccCCCCCcccc--CCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEE
Q 008904 319 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDI 396 (549)
Q Consensus 319 ~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c--~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I 396 (549)
+++|+|+++++...... ....+.| ....+|++|..|+++|++++|+|+||+|.||++|+|.++.|+|
T Consensus 305 ~~~A~Al~~ll~~~~~~-----------~~~~l~C~~~~~~~w~~G~~ll~~ik~v~f~GLTG~I~F~~~G~r~~~~ldI 373 (400)
T cd06392 305 LMLANAFHRKLEDRKWH-----------SMASLNCIRKSTKPWNGGRSMLETIKKGHITGLTGVMEFKEDGANPHVQFEI 373 (400)
T ss_pred HHHHHHHHHHhhccccC-----------CCCCCccCCCCCCCCCChHHHHHHHHhCCCccCccceeECCCCCCcCCceEE
Confidence 99999999876432221 1223578 4577999999999999999999999999999999999999999
Q ss_pred EEEe-----eCceeeEEeEeeCCCCCc
Q 008904 397 INVI-----EHGYPQQIGYWSNYSGLS 418 (549)
Q Consensus 397 ~~~~-----~~~~~~~VG~w~~~~~l~ 418 (549)
++++ |.|. ++||+|++..||+
T Consensus 374 i~l~~~~~~g~g~-~~iG~W~~~~gl~ 399 (400)
T cd06392 374 LGTSYSETFGKDV-RRLATWDSEKGLN 399 (400)
T ss_pred EeccccccCCCCc-eEeEEecCCCCCC
Confidence 9965 6667 9999999988763
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel |
| >cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=415.43 Aligned_cols=367 Identities=21% Similarity=0.343 Sum_probs=300.5
Q ss_pred ceEEEEEEeccC--C-----------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH---
Q 008904 25 EVLNVGAIFSFG--T-----------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM--- 88 (549)
Q Consensus 25 ~~i~IG~l~~~~--~-----------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~--- 88 (549)
|+|+||++||.| . ..|.+...|+++|+++||+++++|||++|++.++|+|+++..+++.+..++
T Consensus 1 Gdi~igglfp~h~~~~~~~~c~~~~~~~g~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~~~~~a~~~~~~l 80 (463)
T cd06376 1 GDITLGGLFPVHARGPAGVPCGDIKKENGIHRLEAMLYALDQINSDPDLLPNVTLGARILDTCSRDTYALEQSLTFVQAL 80 (463)
T ss_pred CCeEEEEEEeeeeCCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCCceEccEEEeccCCcHHHHHHHHHHHhhh
Confidence 579999999998 1 146667899999999999999999999999999999998766665555432
Q ss_pred -h-------------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHH
Q 008904 89 -E-------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLM 147 (549)
Q Consensus 89 -~-------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~ 147 (549)
. ++|.|||||.+|..+.+++++++.++||+|+++++++.+++ ..|||+||+.|++..++
T Consensus 81 ~~~~~~~~~C~~~~~~~~~~~~~V~aviG~~~S~~t~ava~i~~~~~iP~Is~~ats~~ls~~~~~~~ffR~~p~d~~~~ 160 (463)
T cd06376 81 IQKDTSDVRCTNGEPPVFVKPEKVVGVIGASASSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQA 160 (463)
T ss_pred hhcccccCcCCCCCccccCCCCCeEEEECCCCchHHHHHHHHhccccCcccccccCChhhcccccCCceEEccCCHHHHH
Confidence 1 37999999999999999999999999999999999999987 57999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEE
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVH 225 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~ 225 (549)
.++++++++|+|++|++|+.+++||....+.|.+.+++. ++||.....++.. ....++..++++|++ +++++||++
T Consensus 161 ~ai~~~i~~~~w~~Vaii~~~~~yg~~~~~~~~~~~~~~g~~~v~~~~~i~~~--~~~~d~~~~l~~ik~~~~~~vIvl~ 238 (463)
T cd06376 161 QAMVDIVKALGWNYVSTLASEGNYGESGVEAFTQISREAGGVCIAQSIKIPRE--PRPGEFDKIIKRLLETPNARAVIIF 238 (463)
T ss_pred HHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHHHHHHHcCCceEEEEEecCCC--CCHHHHHHHHHHHhccCCCeEEEEe
Confidence 999999999999999999999999999999999999887 4688766555443 457889999999986 799999999
Q ss_pred cchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHH----------
Q 008904 226 GYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVS---------- 295 (549)
Q Consensus 226 ~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~---------- 295 (549)
+...++..++++|+++|+.+ .|+||+++.|........ .....+.|.+++.+.....+.|++|..
T Consensus 239 ~~~~~~~~ll~~a~~~~~~g-~~~wig~d~~~~~~~~~~----~~~~~~~G~~~~~~~~~~~~~F~~~~~~l~~~~~~~~ 313 (463)
T cd06376 239 ANEDDIRRVLEAAKRANQVG-HFLWVGSDSWGAKISPIL----QQEDVAEGAITILPKRASIEGFDAYFTSRTLENNRRN 313 (463)
T ss_pred cChHHHHHHHHHHHhcCCcC-ceEEEEeccccccccccc----cCcceeeeEEEEEeccccchhHHHHHHhCCcccCCCC
Confidence 99999999999999999864 599999998764322211 122467899999888777777766554
Q ss_pred -----HHHhhcCCCCC--------------------------CCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCcccc
Q 008904 296 -----RWNTLSNGSIG--------------------------LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLN 344 (549)
Q Consensus 296 -----~~~~~~~~~~~--------------------------~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~ 344 (549)
.|+..|++..+ ....++++||||+++|+|||+++++++..
T Consensus 314 ~~~~~~w~~~f~c~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~dAVyaiA~ALh~l~~~~c~~--------- 384 (463)
T cd06376 314 VWFAEFWEENFNCKLTISGSKKEDTDRKCTGQERIGRDSTYEQEGKVQFVIDAVYAMAHALHSMHKDLCPG--------- 384 (463)
T ss_pred cHHHHHHHHhCCCcccCCCCccccccCcCcchhhccccCcccccchhHHHHHHHHHHHHHHHHHHHhhCCC---------
Confidence 57776653211 01257789999999999999998665321
Q ss_pred CCCCCccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCCCCCceEEEEEee----CceeeEEeEeeC
Q 008904 345 GLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE----HGYPQQIGYWSN 413 (549)
Q Consensus 345 ~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r~~~~~~I~~~~~----~~~~~~VG~w~~ 413 (549)
....|.... |.++++|+++|++++|+|.+| +|.||++|++ ...|+|.+++. ...+++||.|++
T Consensus 385 ----~~~~C~~~~-~~~~~~l~~~L~~v~F~g~tg~~v~Fd~~G~~-~~~Ydi~n~q~~~~~~~~~~~VG~w~~ 452 (463)
T cd06376 385 ----YTGVCPEME-PADGKKLLKYIRAVNFNGSAGTPVMFNENGDA-PGRYDIFQYQITNTSSPGYRLIGQWTD 452 (463)
T ss_pred ----CCCCCccCC-CCCHHHHHHHHHhCCccCCCCCeEEeCCCCCC-CCceEEEEEEecCCCceeEEEEEEECC
Confidence 112476543 445999999999999999999 7999999997 46899999983 233599999975
|
Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. |
| >KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=389.81 Aligned_cols=449 Identities=22% Similarity=0.354 Sum_probs=354.4
Q ss_pred CCCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEec--CCCChHHHHHHHHH-HHhcCcEEEEc
Q 008904 21 ALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD--AKFNGFLSIMGALQ-FMETDTLAIVG 97 (549)
Q Consensus 21 ~~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d--~~~~~~~a~~~~~~-l~~~~v~aiiG 97 (549)
+..++.++||++++.. ..+..+.-++.++|++.+ -.++.+.-.. ...++.+.+-.+|+ +++..|.+|+-
T Consensus 30 ~~np~t~nig~Vlst~-----~~ee~F~~t~~hln~~~~---s~k~~~~aksv~~d~n~i~t~~~VC~~li~~~vyav~v 101 (993)
T KOG4440|consen 30 ACNPKTVNIGAVLSTR-----KHEEMFRETVNHLNKRHG---SWKIQLNAKSVTHDPNAIQTALSVCEDLISSQVYAVLV 101 (993)
T ss_pred CCCccceeeeeeeech-----hHHHHHHHHHHHhhcccc---ceEEEEccccccCCCcHHHHHHHHHHHHHhhheeEEEe
Confidence 3678999999999875 357788999999997653 2444442221 23466777778885 56778888874
Q ss_pred --CCCch---HHHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc
Q 008904 98 --PQSAV---MAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ 171 (549)
Q Consensus 98 --p~~s~---~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~ 171 (549)
|..|. .-.++.-.++.+.||++.....+..+|++ .++.|+|+.|+.++|+.+..++|.+|.|++|.++.++|..
T Consensus 102 Sh~~Ts~d~f~p~~vSYT~gFY~iPV~G~~~Rda~fSdKnIh~sFlRtvpPyshqa~VwleMl~~~~y~~vi~l~s~d~~ 181 (993)
T KOG4440|consen 102 SHPPTSNDHFTPTPVSYTAGFYRIPVLGLTTRDAIFSDKNIHLSFLRTVPPYSHQASVWLEMLRVYSYNHVILLVSDDHE 181 (993)
T ss_pred cCCCCCCcccccccceeeccceeeeeeeeeehhhhhccCceeeeEeecCCCccchhHHHHHHHHHhhcceEEEEEccccc
Confidence 22222 12334456788999999998889999994 7999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 172 GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 172 g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
|+....+++..+++...+++....+.++ ..++...|-++|...+||+++..+.+++..+++.|..++|++.+|+||
T Consensus 182 gra~~~r~qt~~e~~~~~~e~v~~f~p~----~~~~t~~l~~~k~~~~rv~~~~as~dDA~~ifr~Ag~lnmTG~G~VWi 257 (993)
T KOG4440|consen 182 GRAAQKRLQTLLEERESKAEKVLQFDPG----TKNVTALLMEAKELEARVIILSASEDDAATIFRAAGMLNMTGSGYVWI 257 (993)
T ss_pred chhHHhHHHHHHHHHhhhhhhheecCcc----cchHHHHHhhhhhhhheeEEeecccchHHHHHHhhhhhcccCceEEEE
Confidence 9888888888887666666655566655 567888999999999999999999999999999999999999999999
Q ss_pred EeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhc
Q 008904 252 ATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQ 331 (549)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 331 (549)
.++..... .....|++|.+.....+ ..++.-|+|.++|.|++++++.
T Consensus 258 V~E~a~~~-----------nn~PdG~LGlqL~~~~~----------------------~~~hirDsv~vlasAv~e~~~~ 304 (993)
T KOG4440|consen 258 VGERAISG-----------NNLPDGILGLQLINGKN----------------------ESAHIRDSVGVLASAVHELLEK 304 (993)
T ss_pred Eecccccc-----------CCCCCceeeeEeecCcc----------------------ccceehhhHHHHHHHHHHHHhh
Confidence 99754322 13467899988754322 2456899999999999999875
Q ss_pred CCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhcc-ccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeE
Q 008904 332 GNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN-MTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGY 410 (549)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~-f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~ 410 (549)
..-. ..++.||++...|..+..|.+.+...+ ..|.||+|.||++|+|....|+|+|++.+...+.+|.
T Consensus 305 e~I~-----------~~P~~c~d~~~~w~~g~~l~~~l~s~~~~~g~TgrV~Fnd~gdRi~a~YdiiN~hq~rk~Vg~~~ 373 (993)
T KOG4440|consen 305 ENIT-----------DPPRGCVDNTNIWKTGPLLKRVLMSSKYADGVTGRVEFNDDGDRIFANYDIINLHQNRKLVGVGI 373 (993)
T ss_pred ccCC-----------CCCCcccCccchhcccHHHHHHHhhhcccCCcceeEEEcCCCceeeccceeEehhhhhhhhhhcc
Confidence 4321 234568888889988888988888755 5799999999999999999999999975444366666
Q ss_pred eeCCCCCcccCCcccccCCCCCCCCcccceeeEeCCCCcCCCccccccCCCCeEEEeecCcccccccEEe----------
Q 008904 411 WSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFK---------- 480 (549)
Q Consensus 411 w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------- 480 (549)
|+... + ..+...|+|||+.+.+|.+...| ++||+.+..+.||+...-.
T Consensus 374 yd~~r-~------------------~~nd~~IiWpGg~~~KP~gi~~p---thLrivTi~~~PFVYv~p~~sd~~c~eef 431 (993)
T KOG4440|consen 374 YDGTR-V------------------IPNDRKIIWPGGETEKPRGIQMP---THLRIVTIHQEPFVYVKPTLSDGTCKEEF 431 (993)
T ss_pred cccee-e------------------ccCCceeecCCCCcCCCcccccc---ceeEEEEeccCCeEEEecCCCCcchhhhc
Confidence 65432 1 12345899999999999999876 5588888776666522100
Q ss_pred -----------ec-------------CcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC------------CC-CChH
Q 008904 481 -----------VN-------------GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------------KN-PTYS 523 (549)
Q Consensus 481 -----------~~-------------~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~------------~~-g~~~ 523 (549)
+. ...||.||||||+-++++.++|+ |+...++||+ .+ .+|+
T Consensus 432 ~~~~d~~~k~~c~gpn~s~p~s~~~t~~fCC~G~cIDLLi~Ls~~~Nft--yd~~l~~dg~fg~~~~vnnsseT~~kew~ 509 (993)
T KOG4440|consen 432 TVNGDPVKKVICTGPNDSSPGSPRHTVPFCCYGFCIDLLIKLSRTMNFT--YDVHLVADGKFGTQERVNNSSETNKKEWN 509 (993)
T ss_pred cccCCcccceeecCCCCCCCCCcccCcchhhhHHHHHHHHHHHHhhcce--EEEEEeecccccceeeeecccccccceeh
Confidence 00 14599999999999999999999 9999999997 12 3799
Q ss_pred HHHHhHhcCcccEEecceEEeecccC
Q 008904 524 ELINQITTGVSRILTKKVAQLTRVSL 549 (549)
Q Consensus 524 gl~~~l~~~~~d~~~~~~ti~~~r~~ 549 (549)
||||||.+|+|||+|+++|||+||+.
T Consensus 510 G~iGEL~~~~ADMivaplTINpERa~ 535 (993)
T KOG4440|consen 510 GMIGELLSGQADMIVAPLTINPERAQ 535 (993)
T ss_pred hhhhhhhCCccceEeeceeeChhhhh
Confidence 99999999999999999999999973
|
|
| >cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=402.64 Aligned_cols=366 Identities=21% Similarity=0.326 Sum_probs=308.0
Q ss_pred eEEEEEEec-cC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 26 VLNVGAIFS-FG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 26 ~i~IG~l~~-~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
.|+||++|| ++ +..|...+.|+++|+++||+++++||+..|.+.+.+.++ ++..+.+.+|+++.++|.|||||.+
T Consensus 2 ~i~IG~i~~~~tg~~~~~g~~~~~a~~~Av~~IN~~~~il~~~~l~~~~~~~~~~d~~~~~~~~~~~l~~~V~AiiGp~~ 81 (384)
T cd06393 2 VIRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQ 81 (384)
T ss_pred eeeEEEeecCCcccccccCcHHHHHHHHHHHHhcCCCccCCCceEEEEEEecccccchhHHHHhhcccccCcEEEECCCC
Confidence 589999999 44 445677899999999999999999999999999998665 6668889999988889999999999
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
|..+.+++++++.++||+|+++++++.++++ .+|++|+.|++..++.++++++++|+|++|++||+++ .|...++.+.
T Consensus 82 S~~~~av~~i~~~~~iP~Is~~~t~~~lt~~-~~~~~~~~~~~~~~~~a~~~~~~~~~wk~vaily~~~-~g~~~l~~~~ 159 (384)
T cd06393 82 GSCTNAVQSICNALEVPHIQLRWKHHPLDNK-DTFYVNLYPDYASLSHAILDLVQYLKWRSATVVYDDS-TGLIRLQELI 159 (384)
T ss_pred hHHHHHHHHHHhccCCCeEeccCCCcccCcc-ceeEEEeccCHHHHHHHHHHHHHHcCCcEEEEEEeCc-hhHHHHHHHH
Confidence 9999999999999999999999888888764 3577888899888999999999999999999999765 4666667788
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|++|... .++.+ ..+++.+|++||+.++++||+++....+..+++||+++||..+.|+|++++......
T Consensus 160 ~~~~~~g~~v~~~-~~~~~----~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~~~~~~~~~~~~~~ 234 (384)
T cd06393 160 MAPSRYNIRLKIR-QLPTD----SDDARPLLKEMKRGREFRIIFDCSHQMAAQILKQAMAMGMMTEYYHFIFTTLDLYAL 234 (384)
T ss_pred HhhhccCceEEEE-ECCCC----chHHHHHHHHHhhcCceEEEEECCHHHHHHHHHHHHHhccccCceEEEEccCccccc
Confidence 8888889998864 35533 679999999999999999999999999999999999999999999999888654443
Q ss_pred CCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhh-cCCCC---------CCCchhhhHhHHHHHHHHHHHHHHh
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL-SNGSI---------GLNPYGLYAYDTVWMIARALKLFLD 330 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~---------~~~~~~~~~yDav~~~a~Al~~~~~ 330 (549)
+. ........+++++....+..+.+++|.+.|+++ ++... .+...++++||||+++++|++++..
T Consensus 235 ~~-----~~~~~~~~~it~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aal~yDav~~~a~A~~~~~~ 309 (384)
T cd06393 235 DL-----EPYRYSGVNLTGFRILNVDNPHVSSIVEKWSMERLQAAPKPETGLLDGVMMTDAALLYDAVHMVSVCYQRAPQ 309 (384)
T ss_pred cc-----hhhhcCcceEEEEEecCCCcHHHHHHHHHHHhhhhccccccccccccccccchhHHhhhhHHHHHHHHhhhhh
Confidence 32 111123334678888888889999999999753 44211 1256799999999999999997532
Q ss_pred cCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEcc-CCCCCCCceEEEEEeeCceeeEEe
Q 008904 331 QGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQ-DRSLLHPSYDIINVIEHGYPQQIG 409 (549)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~-~g~r~~~~~~I~~~~~~~~~~~VG 409 (549)
.. ...+.|+...+|.+|..|.++|++++|+|+||++.||+ +|.|.++.|+|+++.++++ ++||
T Consensus 310 ~~---------------~~~~~c~~~~~w~~G~~i~~~l~~~~~~GltG~i~Fd~~~g~r~~~~~~i~~~~~~g~-~~vg 373 (384)
T cd06393 310 MT---------------VNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGL-EKVG 373 (384)
T ss_pred cC---------------CCCCCCCCCCCCcccHHHHHHHhheeecccccceEecCCCCeeeeeEEEEEEecCCcc-eeeE
Confidence 21 12457888889999999999999999999999999996 6899999999999998888 9999
Q ss_pred EeeCCCCCcc
Q 008904 410 YWSNYSGLSV 419 (549)
Q Consensus 410 ~w~~~~~l~~ 419 (549)
.|++..||++
T Consensus 374 ~W~~~~g~~~ 383 (384)
T cd06393 374 VWNPNTGLNI 383 (384)
T ss_pred EEcCCCCcCC
Confidence 9999988753
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated |
| >cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=394.38 Aligned_cols=355 Identities=19% Similarity=0.272 Sum_probs=297.4
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+||+||+... ...+.||++|++++|.+..++|. ++ .. ...|++.+.+++|+++++||.|||||.++..+..+
T Consensus 1 ~iG~if~~~~---~~~~~af~~av~~~N~~~~l~~~--~~--~~-~~~dsf~~~~~~C~~~~~gV~AI~Gp~s~~~a~~v 72 (364)
T cd06390 1 QIGGLFPNQQ---SQEHAAFRFALSQLTEPPKLLPQ--ID--IV-NISDSFEMTYTFCSQFSKGVYAIFGFYDRKTVNML 72 (364)
T ss_pred CCceeeCCCC---hHHHHHHHHHHHHhccCcccccc--eE--Ee-ccccHHHHHHHHHHHhhcCceEEEccCChhHHHHH
Confidence 4899998864 45789999999999998755542 11 22 23589999999999999999999999999999999
Q ss_pred HHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcC
Q 008904 108 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIR 187 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g 187 (549)
+++|+.++||+|+++. |..+ ..+|++++.|+ +.+|+++++++|+|++|++||+++ ||...++.|.+.+++.|
T Consensus 73 ~sic~~~~vP~i~~~~--~~~~--~~~~~i~~~P~---~~~Ai~diI~~~~W~~v~iIYd~d-~g~~~lq~l~~~~~~~~ 144 (364)
T cd06390 73 TSFCGALHVCFITPSF--PVDT--SNQFVLQLRPE---LQDALISVIEHYKWQKFVYIYDAD-RGLSVLQKVLDTAAEKN 144 (364)
T ss_pred HHhhcCCCCCceecCC--CCCC--CCceEEEeChh---HHHHHHHHHHHcCCcEEEEEEeCC-ccHHHHHHHHHhhhccC
Confidence 9999999999999744 3222 33568999997 899999999999999999999655 99999999999999999
Q ss_pred eEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCC
Q 008904 188 CKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLS 267 (549)
Q Consensus 188 ~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~ 267 (549)
++|.....++.. ..+++.+|+++++.++++||++|+.+.+..+|+++.+.+|+..+|+||+++......+.
T Consensus 145 ~~I~~~~~~~~~----~~d~~~~L~~ik~~~~rvIVl~~~~~~~~~~L~~a~~~~~~~~gy~wI~t~l~~~~~~~----- 215 (364)
T cd06390 145 WQVTAVNILTTT----EEGYRKLFQDLDKKKERLIVVDCESERLNAILNQIIKLEKNGIGYHYILANLGFMDIDL----- 215 (364)
T ss_pred ceeeEEEeecCC----hHHHHHHHHhccccCCeEEEEECCHHHHHHHHHHHHHhhccCCceEEEecCCCcccccH-----
Confidence 999877665532 56899999999999999999999999999999999888888999999999854433332
Q ss_pred hhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCC------CCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCc
Q 008904 268 LKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDT 341 (549)
Q Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~ 341 (549)
........|+++++++.+..+.+++|..+|++.+.. ...+..+++++||||+++|+|++++...+...+.
T Consensus 216 ~~~~~~~~nitg~r~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~yDaV~~~A~A~~~l~~~~~~~~~---- 291 (364)
T cd06390 216 TKFRESGANVTGFQLVNYTDTTVSRIMQQWKNFDARDLPRVDWKRPKYTSALTYDGVRVMAEAFQNLRKQRIDISR---- 291 (364)
T ss_pred HHHhcCCcCceEEEEecCCCHHHHHHHHHHHhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHcCCCccc----
Confidence 345568899999999999999999999999876531 1246778999999999999999998654433211
Q ss_pred cccCCCCCccccCC--ccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCCCC
Q 008904 342 KLNGLGGGTLNLGA--LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGL 417 (549)
Q Consensus 342 ~~~~~~~~~~~c~~--~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~l 417 (549)
.+....|.. ..+|.+|..|.++|++++|+|+||+|.||++|+|.++.|+|+++.+.+. ++||.|++..||
T Consensus 292 -----~~~~~~C~~~~~~~w~~G~~l~~~i~~~~f~GlTG~i~F~~~G~r~~~~~~I~~~~~~g~-~~vG~W~~~~g~ 363 (364)
T cd06390 292 -----RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGI-RKIGYWNEDEKL 363 (364)
T ss_pred -----CCCCCCCCCCCCCCCccHHHHHHHHHhhcccccccceeeCCCCCcccceEEEEEecCCcc-eEEEEECCCCCc
Confidence 122335753 4479999999999999999999999999999999999999999999998 999999998765
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). |
| >cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-50 Score=398.71 Aligned_cols=348 Identities=21% Similarity=0.293 Sum_probs=291.9
Q ss_pred EEEEEeccCCC---------------------CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHH
Q 008904 28 NVGAIFSFGTV---------------------NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ 86 (549)
Q Consensus 28 ~IG~l~~~~~~---------------------~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~ 86 (549)
.||++||.|.. .|.+...|+.+|+|+||+++ +|||++|+++++|+|+++..+++.+.+
T Consensus 1 ~lgglf~vh~~~~~~~~~~~~~~~~~c~~~~~~g~~~~~am~~AieeIN~~~-~Lpg~~L~~~i~Dt~~~~~~a~~~a~~ 79 (403)
T cd06361 1 IIGGLFAIHEAMLSVEDTPSRPQIQECVGFEIKGFLQTLAMIHAIEMINNST-LLLGVTLGYEIYDTCSEVTTAMAAVLR 79 (403)
T ss_pred CEEEEEECcccccccccccCCCCCCcccccChhHHHHHHHHHHHHHHHhCCC-CCCCCEEceEEEeCCCChHHHHHHHHH
Confidence 38999999842 26678899999999999999 678999999999999999999999999
Q ss_pred HHhc-------------------CcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHH
Q 008904 87 FMET-------------------DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYL 146 (549)
Q Consensus 87 l~~~-------------------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~ 146 (549)
++++ +|.|||||.+|..+.+++++++.++||+|+++++++.+++ .+|||+||+.|++..+
T Consensus 80 li~~~~~~~~~~~~~c~~~~~~~~V~aVIG~~~S~~s~ava~v~~~~~IP~IS~~ats~~Ls~~~~~~~ffRt~p~D~~q 159 (403)
T cd06361 80 FLSKFNCSRSTVEFKCDYSQYVPRIKAVIGAGYSEISMAVSRMLNLQLIPQVSYASTAEILSDKIRFPSFLRTVPSDFYQ 159 (403)
T ss_pred HHhhcccccccccccccCCCCCCCeEEEECCCcchHHHHHHHHhccCCcceEecCcCCcccCCcccCCCeeECCCchHhH
Confidence 9873 7999999999999999999999999999999999999998 5899999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCC---hhhHHHHHHHHhcCCCeEEE
Q 008904 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVT---ETDVRNELVKVRMMEARVIV 223 (549)
Q Consensus 147 ~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~vii 223 (549)
++++++++++|+|++|++|+++++||+...+.|.+.+++.|+||+..+.++...... ..++..+++.++++++++||
T Consensus 160 a~ai~~li~~~~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVv 239 (403)
T cd06361 160 TKAMAHLIKKSGWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIV 239 (403)
T ss_pred HHHHHHHHHHcCCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEE
Confidence 999999999999999999999999999999999999999999999988887541011 14556666778889999999
Q ss_pred EEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCC
Q 008904 224 VHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG 303 (549)
Q Consensus 224 l~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 303 (549)
+++...++..++++|+++|+ +++||+++.|........ ........|.+++.+..+..+.+++|++. .+
T Consensus 240 v~~~~~~~~~l~~~a~~~g~---~~~wigs~~w~~~~~~~~---~~~~~~~~g~ig~~~~~~~~~~F~~~~~~---~~-- 308 (403)
T cd06361 240 VFARQFHVFLLFNKAIERNI---NKVWIASDNWSTAKKILT---DPNVKKIGKVVGFTFKSGNISSFHQFLKN---LL-- 308 (403)
T ss_pred EEeChHHHHHHHHHHHHhCC---CeEEEEECcccCcccccc---CCcccccceEEEEEecCCccchHHHHHHH---hh--
Confidence 99999999999999999997 689999998865322211 11224567889988877666665555443 32
Q ss_pred CCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEE
Q 008904 304 SIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHF 383 (549)
Q Consensus 304 ~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~f 383 (549)
...+||||+++|+|||++..+. .|...... ++++|+++|++++|.|.+|++.|
T Consensus 309 -------~~~v~~AVyaiA~Al~~~~~~~-------------------~c~~~~~~-~~~~l~~~L~~~~f~g~~~~v~F 361 (403)
T cd06361 309 -------IHSIQLAVFALAHAIRDLCQER-------------------QCQNPNAF-QPWELLGQLKNVTFEDGGNMYHF 361 (403)
T ss_pred -------HHHHHHHHHHHHHHHHHhccCC-------------------CCCCCCCc-CHHHHHHHHheeEEecCCceEEE
Confidence 3468999999999999964321 25443334 38899999999999999889999
Q ss_pred ccCCCCCCCceEEEEEee---CceeeEEeEeeCCC
Q 008904 384 NQDRSLLHPSYDIINVIE---HGYPQQIGYWSNYS 415 (549)
Q Consensus 384 d~~g~r~~~~~~I~~~~~---~~~~~~VG~w~~~~ 415 (549)
|++|+. ...|+|++++. ...+++||.|++..
T Consensus 362 d~~gd~-~~~y~I~~~~~~~~~~~~~~vg~~~~~~ 395 (403)
T cd06361 362 DANGDL-NLGYDVVLWKEDNGHMTVTIMAEYDPQN 395 (403)
T ss_pred CCCCCC-CcceEEEEeEecCCcEEEEEEEEEeCCC
Confidence 999995 68899999984 23469999998865
|
This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. |
| >cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=389.12 Aligned_cols=361 Identities=16% Similarity=0.236 Sum_probs=301.9
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCC-ceEEEEEecC-CCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGG-RKLSITMHDA-KFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g-~~l~~~~~d~-~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
.||+||+.++ ...+.||++|++++|.+..+++. .+|.+.+... ..|++.+.+++|+++++||.||+||.++..+.
T Consensus 1 ~iG~iF~~~~---~~~~~aF~~Av~~~N~~~~~~~~~~~l~~~i~~~~~~dsf~~~~~~C~l~~~GV~AIfGp~~~~s~~ 77 (372)
T cd06387 1 SIGGLFMRNT---VQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMN 77 (372)
T ss_pred CcceeecCCc---HHHHHHHHHHHHHhcccccccccCeEEEEeeEEecCCChHHHHHHHHHHhhcccEEEEecCCHhHHH
Confidence 3899999765 35789999999999999877765 5888766543 45899999999999999999999999999999
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhh
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE 185 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~ 185 (549)
+++++|+.++||+|.+... .+...++.+++.|+ +..|+++++++|+|++|++|| |+++|...++.|.+.++.
T Consensus 78 ~v~s~c~~~~iP~i~~~~~----~~~~~~~~l~l~P~---l~~Ai~diI~~~~Wr~~~~iY-d~d~gl~~Lq~L~~~~~~ 149 (372)
T cd06387 78 TLTSFCGALHTSFITPSFP----TDADVQFVIQMRPA---LKGAILSLLAHYKWEKFVYLY-DTERGFSILQAIMEAAVQ 149 (372)
T ss_pred HHHHhhccccCCeeeeCCC----CCCCCceEEEEChh---HHHHHHHHHHhcCCCEEEEEe-cCchhHHHHHHHHHhhcc
Confidence 9999999999999987332 12334778999998 789999999999999999999 667888889999999998
Q ss_pred cCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCc
Q 008904 186 IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSP 265 (549)
Q Consensus 186 ~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~ 265 (549)
.++.|......+.. ...+++.+++++++.+.++||++|+++.+..+|++|.++||+..+|+||+++......+.
T Consensus 150 ~~~~V~~~~v~~~~---~~~~~~~~l~el~~~~~r~iIld~s~~~~~~il~~a~e~gM~~~~y~~ilt~ld~~~~dl--- 223 (372)
T cd06387 150 NNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDISL--- 223 (372)
T ss_pred CCceEEEEEeccCC---chHHHHHHHHHhccccceEEEEECCHHHHHHHHHHHHHcCccccceEEEEecCCcccccH---
Confidence 89888766543322 355789999999999999999999999999999999999999999999999876555444
Q ss_pred CChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCC------CCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 266 LSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.+......+++++++..+..+..++|.++|++.+.. ...+..+++++||||+++|+|++++.........
T Consensus 224 --~~~~~g~~NItg~rl~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~~al~yDaV~~~A~A~~~l~~~~~~~~~-- 299 (372)
T cd06387 224 --ERVMHGGANITGFQIVNNENPMVQQFLQRWVRLDEREFPEAKNSPLKYTSALTHDAILVIAEAFRYLRRQRVDVSR-- 299 (372)
T ss_pred --HHhccCCcceeEEEEecCCCchHHHHHHHHHhCCcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCccc--
Confidence 234445556999999999999999999999876531 1245678999999999999999998544322110
Q ss_pred CccccCCCCCccccCC--ccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCCCC
Q 008904 340 DTKLNGLGGGTLNLGA--LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGL 417 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~--~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~l 417 (549)
.+.+..|.. ..+|.+|..|.++|++++|+|+||++.|+++|+|.++.|+|+++.+++. ++||.|++..|+
T Consensus 300 -------~~~~~~C~~~~~~~W~~G~~l~~~ik~v~~~GLTG~i~F~~~G~R~~~~ldIinl~~~g~-~kIG~W~~~~g~ 371 (372)
T cd06387 300 -------RGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKPSGS-RKAGYWNEYERF 371 (372)
T ss_pred -------CCCCCCcCCCCCCCccchHHHHHHHHhcccCCCccceeeCCCCCcccceEEEEEecCCCc-eeEEEECCCCCc
Confidence 123346754 4589999999999999999999999999999999999999999999998 999999998775
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). |
| >cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=388.50 Aligned_cols=341 Identities=21% Similarity=0.312 Sum_probs=279.4
Q ss_pred ccCCCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEc
Q 008904 19 QGALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ-FMETDTLAIVG 97 (549)
Q Consensus 19 ~~~~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~aiiG 97 (549)
.+++.+..|+||++||.+ ..+.++++|++++|++.+.+++.++.....+.+.++..+...+|+ |++++|.||||
T Consensus 12 ~~~~~~~~i~IG~i~~~~-----~~~~~~~~Ai~~~N~~~~~~~~~~l~~~~i~~~~~~~~~a~~~~~~Li~~~V~aii~ 86 (377)
T cd06379 12 RAGCSPKTVNIGAVLSNK-----KHEQEFKEAVNAANVERHGSRKIKLNATTITHDPNPIQTALSVCEQLISNQVYAVIV 86 (377)
T ss_pred ccCCCCcEEEEeEEecch-----hHHHHHHHHHHHHhhhhcCCcceeeccceEeecCChhhHHHHHHHHHhhcceEEEEE
Confidence 334557889999999843 578999999999999655434434443322224577777777774 67889999984
Q ss_pred -CC-Cch---HHHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc
Q 008904 98 -PQ-SAV---MAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ 171 (549)
Q Consensus 98 -p~-~s~---~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~ 171 (549)
+. ++. .+.+++.+++.++||+|+++++++.++++ .|||+||+.|++..++.++++++++++|++|++||++++|
T Consensus 87 ~~~~ss~~~~~~~~v~~~~~~~~iP~Is~~a~~~~ls~~~~~~~~~R~~psd~~~~~a~~~~l~~~~w~~vaii~~~~~~ 166 (377)
T cd06379 87 SHPPTSNDHLTPTSVSYTAGFYRIPVVGISTRDSIFSDKNIHLSFLRTVPPYSHQADVWLEMLRSFKWNKVILLVSDDHE 166 (377)
T ss_pred eCCCCCcccccHHHHHHHhhCCCCcEEecccCCccccCccccccEEEecCCHHHHHHHHHHHHHHcCCeEEEEEEEcCcc
Confidence 33 332 46778889999999999999888888874 6999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhcCe----EEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 172 GRNGVTALGDKLAEIRC----KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 172 g~~~~~~l~~~~~~~g~----~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
|....+.+++.+++.|+ +|+....++.. ..++...++++++.++++|++++..+++..++++|+++||++.+
T Consensus 167 g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~----~~d~~~~l~~ik~~~~~vIvl~~~~~~~~~l~~qa~~~g~~~~~ 242 (377)
T cd06379 167 GRAAQKRFETLLEEREIEFKIKVEKVVEFEPG----EKNVTSLLQEAKELTSRVILLSASEDDAAVIYRNAGMLNMTGEG 242 (377)
T ss_pred hhHHHHHHHHHHHhcCCccceeeeEEEecCCc----hhhHHHHHHHHhhcCCeEEEEEcCHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999 88877777644 67899999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHH
Q 008904 248 YVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKL 327 (549)
Q Consensus 248 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 327 (549)
|+||.++.+... .....|++++++..+. .+++++||||+++|+|+++
T Consensus 243 ~~wi~t~~~~~~-----------~~~~~g~~g~~~~~~~----------------------~~~~~~yDAV~~~A~Al~~ 289 (377)
T cd06379 243 YVWIVSEQAGAA-----------RNAPDGVLGLQLINGK----------------------NESSHIRDAVAVLASAIQE 289 (377)
T ss_pred EEEEEecccccc-----------ccCCCceEEEEECCCC----------------------CHHHHHHHHHHHHHHHHHH
Confidence 999999987322 1345788888875421 2467899999999999999
Q ss_pred HHhcCCCccccCCccccCCCCCccccCCc-cccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceee
Q 008904 328 FLDQGNTISFSNDTKLNGLGGGTLNLGAL-SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQ 406 (549)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~-~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~ 406 (549)
+.++... ......|... .+|..|..+.++|++++|+|+||+|.||++|+|....|+|+++++.++ +
T Consensus 290 ~~~~~~~------------~~~~~~c~~~~~~~~~g~~l~~~l~~v~f~G~tg~i~Fd~~Gd~~~~~~~I~~~~~~~~-~ 356 (377)
T cd06379 290 LFEKENI------------TEPPRECVGNTVIWETGPLFKRALMSSKYPGETGRVEFNDDGDRKFANYDIMNIQNRKL-V 356 (377)
T ss_pred HHcCCCC------------CCCCccccCCCCCCcchHHHHHHHHhCCcCCccCceEECCCCCccCccEEEEEecCCCc-e
Confidence 8763221 1112356543 258889999999999999999999999999999878999999998777 9
Q ss_pred EEeEeeCC
Q 008904 407 QIGYWSNY 414 (549)
Q Consensus 407 ~VG~w~~~ 414 (549)
+||.|++.
T Consensus 357 ~VG~w~~~ 364 (377)
T cd06379 357 QVGLYNGD 364 (377)
T ss_pred EeeEEcCc
Confidence 99999874
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore |
| >cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=379.11 Aligned_cols=364 Identities=22% Similarity=0.340 Sum_probs=291.3
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEE--EEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSI--TMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~--~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
+||+||+.++.. .+.|+++|+++||++..+||+.+|.+ .+.|++ |+..+.+++|++++++|.|||||.++..+.
T Consensus 1 ~IGaif~~~s~~---~~~Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~~-d~f~a~~~~c~l~~~gv~ai~Gp~~~~~~~ 76 (400)
T cd06391 1 HIGAIFDESAKK---DDEVFRMAVADLNQNNEILQTEKITVSVTFVDGN-NPFQAVQEACELMNQGILALVSSIGCTSAG 76 (400)
T ss_pred CcceeeccCCch---HHHHHHHHHHHhcCCccccCCCcceEEEEEeeCC-CcHHHHHHHHHHHhCCeEEEECCCcchHHH
Confidence 489999998743 46799999999999999999985555 888885 999999999999999999999998888889
Q ss_pred HHHHhhhhcCCcEEec----ccCC-----CCCCC--CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccc
Q 008904 106 VLSHLANELQVPLLSF----TALD-----PTLSP--LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRN 174 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~----~~~~-----~~ls~--~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~ 174 (549)
.++++|+.++||+|++ ++++ +.+++ .+||+++| |+ ..+.+++++++++|+|++++++| ++++|..
T Consensus 77 ~v~~~~~~~~vP~i~~~~~~~~t~~~~~~~~~~~~~~~y~~~~r--p~-~~~~~ai~~li~~f~W~~v~i~~-d~~~~~~ 152 (400)
T cd06391 77 SLQSLADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVR--PP-VYLNDVILRVVTEYAWQKFIIFY-DTDYDIR 152 (400)
T ss_pred HHHHHhccCcCCeEEeecccccCccccCCCCCCCCcccceEEec--Ch-HHHHHHHHHHHHHcCCcEEEEEE-eCCccHH
Confidence 9999999999999974 3322 33443 35777777 54 67899999999999999999866 5668888
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCC---hhhHHH-HHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCe
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVT---ETDVRN-ELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~---~~~~~~-~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~ 248 (549)
.++.+.+.+++.|+||..... ... .. ...++. .+++|++ ++.++||++|+.+.+..+|++|+++||++.+|
T Consensus 153 ~l~~l~~~~~~~~i~I~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~~~~rviVl~~~~~~~~~ll~~a~~~gm~~~~y 229 (400)
T cd06391 153 GIQEFLDKVSQQGMDVALQKV-ENN--INKMITGLFRTMRIEELNRYRDTLRRAILVMNPATAKSFITEVVETNLVAFDC 229 (400)
T ss_pred HHHHHHHHHHHcCCeEEEEec-Ccc--hhhhhHHHHHHHHHHHHHhhcccccEEEEECCcHHHHHHHHHHHHcCCCCCCe
Confidence 999999999999999987432 211 00 012222 4556665 66799999999999999999999999999999
Q ss_pred EEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC---------CCCCchhhhHhHHHH
Q 008904 249 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS---------IGLNPYGLYAYDTVW 319 (549)
Q Consensus 249 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~---------~~~~~~~~~~yDav~ 319 (549)
+||++++.....+..+ .....+.|+.+++++.+......+|..+|..++... ..+..+++++||||+
T Consensus 230 ~wi~t~~~~~~~dl~~----~~~~~~~~v~~~r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~alayDaV~ 305 (400)
T cd06391 230 HWIIINEEISDMDVQE----LVRRSIGRLTIIRQTFPLPQNISQRCFRGNHRISSSLCDPKDPFAQMMEISNLYIYDTVL 305 (400)
T ss_pred EEEEeCccccccccch----HHhcccceEEEeccCCchHHHHHHHHHHHhhhccccccCccccccccccchhhHHHHHHH
Confidence 9999999887766532 223345677778877777677888888887665210 135678999999999
Q ss_pred HHHHHHHHHHhcCCCccccCCccccCCCCCccccCC--ccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEE
Q 008904 320 MIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGA--LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDII 397 (549)
Q Consensus 320 ~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~ 397 (549)
++|+|++++....... ....+.|.. ..+|..|..|+++|++++|+|+||+|.|+++|+|.++.|+|+
T Consensus 306 ~~A~A~~~l~~~~~~~-----------~~~~~~c~~~~~~~w~~G~~ll~~i~~~~f~GlTG~i~f~~~g~r~~~~~dIi 374 (400)
T cd06391 306 LLANAFHKKLEDRKWH-----------SMASLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGELEFNENGGNPNVHFEIL 374 (400)
T ss_pred HHHHHHHHHHhhcccc-----------CCCCcccccCCCCCCCChHHHHHHHHhcCcccceeceEECCCCCccCCceEEE
Confidence 9999999875332221 123456754 458999999999999999999999999999999999999999
Q ss_pred EEe-----eCceeeEEeEeeCCCCCc
Q 008904 398 NVI-----EHGYPQQIGYWSNYSGLS 418 (549)
Q Consensus 398 ~~~-----~~~~~~~VG~w~~~~~l~ 418 (549)
|+. ++|. ++||.|++..||+
T Consensus 375 n~~~~~~~~~g~-rkiG~Ws~~~gl~ 399 (400)
T cd06391 375 GTNYGEDLGRGV-RKLGCWNPITGLN 399 (400)
T ss_pred EeeccccCCCcc-eEEEEEcCCcCCC
Confidence 996 7888 9999999988763
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a |
| >cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=375.84 Aligned_cols=361 Identities=17% Similarity=0.246 Sum_probs=292.3
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCC-CceEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLG-GRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~-g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
+||+||+..+ .+.+.||++|++.+|.+..+++ +.+|.+++.... .|++.+.+++|++++++|.|||||.+|..+.
T Consensus 1 ~iG~if~~~~---~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~~~~~~C~~~~~gV~AI~Gp~ss~~~~ 77 (371)
T cd06388 1 QIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVH 77 (371)
T ss_pred CCceeecCCc---hHHHHHHHHHHHHhhccccccccceEEeeeeeecCCCChhHHHHHHHHHHhCCceEEEecCCHHHHH
Confidence 4899999754 3568999999999998764543 357777665443 5899999999999999999999999999999
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhh
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE 185 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~ 185 (549)
+++++|+.++||+|++++. +...+.|.+++.|+ +..++++++++|+|++|++||++ +++...++.|.+.+++
T Consensus 78 ~v~~i~~~~~IP~I~~~~~----~~~~~~f~i~~~p~---~~~a~~~~i~~~~wk~vaiiYd~-~~~~~~lq~l~~~~~~ 149 (371)
T cd06388 78 TLTSFCSALHISLITPSFP----TEGESQFVLQLRPS---LRGALLSLLDHYEWNRFVFLYDT-DRGYSILQAIMEKAGQ 149 (371)
T ss_pred HHHHHhhCCCCCeeecCcc----ccCCCceEEEeChh---hhhHHHHHHHhcCceEEEEEecC-CccHHHHHHHHHhhHh
Confidence 9999999999999997543 12345566677776 56888889999999999999953 3555778999999999
Q ss_pred cCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCc
Q 008904 186 IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSP 265 (549)
Q Consensus 186 ~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~ 265 (549)
.|+.|......+.. ..+++.+|++|+++++++||+.|+.+.+..+++||+++||+.++|+||+++......+.
T Consensus 150 ~g~~v~~~~~~~~~----~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~l--- 222 (371)
T cd06388 150 NGWQVSAICVENFN----DASYRRLLEDLDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL--- 222 (371)
T ss_pred cCCeeeeEEeccCC----cHHHHHHHHHhcccccEEEEEECCHHHHHHHHHHHHhcCccccceEEEEccCccccccH---
Confidence 99998875543322 55999999999999999999999999999999999999999999999998864333222
Q ss_pred CChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcC-----CCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCC
Q 008904 266 LSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSN-----GSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSND 340 (549)
Q Consensus 266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~-----~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 340 (549)
.+......++.+++...+..+..++|.++|.+.+. ....+...++++||||+++|+|++++........
T Consensus 223 --~~~~~g~~nitg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~aAl~YDaV~l~a~A~~~l~~~~~~~~---- 296 (371)
T cd06388 223 --ERFMHGGANVTGFQLVDFNTPMVTKLMQRWKKLDQREYPGSESPPKYTSALTYDGVLVMAEAFRNLRRQKIDIS---- 296 (371)
T ss_pred --HHHhccCCceEEEEeecCCChhHHHHHHHHHhcCccccCCCCCCccchHHHHHHHHHHHHHHHHHHHhcCCCcc----
Confidence 22334455588998888888899999999977542 1125677899999999999999998754322110
Q ss_pred ccccCCCCCccccCC--ccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCCCCc
Q 008904 341 TKLNGLGGGTLNLGA--LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLS 418 (549)
Q Consensus 341 ~~~~~~~~~~~~c~~--~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~l~ 418 (549)
..+.+..|.. ..+|.+|..|.++|++++|+|+||++.||++|+|.++.++|+++.++|. ++||.|++..||+
T Consensus 297 -----~~~~~~~C~~~~~~~w~~G~~i~~~lk~~~~~GlTG~i~Fd~~G~r~~~~l~Ii~l~~~g~-~kvG~W~~~~g~~ 370 (371)
T cd06388 297 -----RRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNIQFDHYGRRVNYTMDVFELKSNGP-RKIGYWNDMDKLV 370 (371)
T ss_pred -----cCCCCCCcCCCCCCCCcccHHHHHHHHhcCcCCCccceeECCCCCcccceEEEEEccCCCc-eEEEEEcCCCCcc
Confidence 0122346743 5689999999999999999999999999999999988999999998898 9999999988764
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). |
| >KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=390.43 Aligned_cols=393 Identities=23% Similarity=0.392 Sum_probs=336.6
Q ss_pred CCCceEEEEEEeccCC-------------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~ 88 (549)
..+++|.||++||.|. ..|.+...|+.+|+++||+ +.+|||.+|++.++|+|..+..|+++..+++
T Consensus 27 ~~~gdi~lgglFpvh~k~~~~~~cg~~~~~~gi~r~eAml~al~~iN~-~~lLp~~kLG~~i~DTCs~~t~aleqsl~Fv 105 (878)
T KOG1056|consen 27 RIPGDIILGGLFPVHEKGGGAPQCGRIREPRGIQRLEAMLFALDEINN-PDLLPNIKLGARILDTCSRSTYALEQSLSFV 105 (878)
T ss_pred cCCCCeEEcceeeecccCCCCCcccccccchhHHHHHHHHHHHHHhcC-cccCCCceeeeeEeeccCCcHHHHHhhHHHH
Confidence 5689999999999972 2366778999999999999 9999999999999999999999999999988
Q ss_pred hc-----------------CcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHH
Q 008904 89 ET-----------------DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAI 150 (549)
Q Consensus 89 ~~-----------------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai 150 (549)
.. .|.++||+..|..+.+++.++..++||||+|+++++.+++ .+|+||.|+.|+|..|++||
T Consensus 106 ~~~~~~~~~e~~c~~g~sp~v~~VIG~s~Ssvsi~vanlLrlf~ipQisyaSts~~LSdk~ry~~F~RtVP~D~~Qa~Am 185 (878)
T KOG1056|consen 106 RASLTSDDSEVRCPDGYSPPVVAVIGPSYSSVSIAVANLLRLFLIPQISYASTSPDLSDKTRYDYFLRTVPSDVFQAQAM 185 (878)
T ss_pred HhcccCCCcceecCCCCCCceeEEeCCCCchHHHHHHHHHHhhcCceeccccCCcccccchhhhceeeecCChHHHHHHH
Confidence 53 5899999999999999999999999999999999999999 59999999999999999999
Q ss_pred HHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcchH
Q 008904 151 AEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSR 229 (549)
Q Consensus 151 ~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~ 229 (549)
++++++|+|++|..++++++||+.+.+.|.+..+++|+||...+.++.. ..+..+...++++.. .++++||+++..+
T Consensus 186 ~~il~~f~W~yVstv~s~~dYGE~Gieaf~~~a~~~~iCIa~s~ki~~~--~~~~~~~~~l~kl~~~~~a~vvV~F~~~~ 263 (878)
T KOG1056|consen 186 VDILKKFNWNYVSTVASEGDYGESGIEAFKEEAAERGICIAFSEKIYQL--SIEQEFDCVLRKLLETPNARVVVVFCRGE 263 (878)
T ss_pred HHHHHHhCeeEeeehhcCccchhhhHHHHHHhHHhcCceEEehhhcccc--cchhHHHHHHHHHhhcCCCeEEEEecCcc
Confidence 9999999999999999999999999999999999999999998777655 567788999999887 8899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHH-------------
Q 008904 230 TGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR------------- 296 (549)
Q Consensus 230 ~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~------------- 296 (549)
+++.++++|+++++++ .++||+++.|....+.. ........|++++.+..+..+.+++|.+.
T Consensus 264 ~~r~~~~aa~~~n~~g-~~~wiaSd~W~~~~~~~----~~~e~~a~g~i~i~l~~~~v~~F~~y~~s~~p~nn~~n~w~~ 338 (878)
T KOG1056|consen 264 DARRLLKAARRANLTG-EFLWIASDGWASQNSPT----EAPEREAEGAITIKLASPQVPGFDRYFQSLHPENNRRNPWFA 338 (878)
T ss_pred hHHHHHHHHHHhCCCc-ceEEEecchhhccCChh----hhhhhhhceeEEEEecCCcchhHHHHHHhcCccccccCcccc
Confidence 9999999999999864 69999999988654332 12234788999999988888888777643
Q ss_pred --HHhhcCCCC--------------------------CCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCC
Q 008904 297 --WNTLSNGSI--------------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGG 348 (549)
Q Consensus 297 --~~~~~~~~~--------------------------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~ 348 (549)
|+..|++.. .-..-...++|||+++|+|||.+.++... +
T Consensus 339 e~w~~~f~C~l~~~~~~~~~~~~~Ct~~e~~~~~~~~~q~~k~~~Vi~aVya~A~aLh~m~~~lc~-------------~ 405 (878)
T KOG1056|consen 339 EFWEDKFNCSLPNSAFKNENLIRLCTAVERITLDSAYEQDSKVQFVIDAVYAMAHALHNMHQDLCP-------------G 405 (878)
T ss_pred hhhhhcccCCCCcccccchhhhhhcccchhhccccchhhhcccccHHHHHHHHHHHHHHHHHhhcC-------------C
Confidence 555554210 01123567899999999999999876543 2
Q ss_pred CccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCc---eeeEEeEeeCCCCCcccCCccc
Q 008904 349 GTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHG---YPQQIGYWSNYSGLSVVPPEKL 425 (549)
Q Consensus 349 ~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~---~~~~VG~w~~~~~l~~~~~~~~ 425 (549)
....|..+...+ |+.|.+++++++|.+..|.+.||++|| ..+.|+|++++..+ .+..||.|+....|
T Consensus 406 ~~~~C~~m~~~d-g~~L~~~l~~vnF~~~~~~v~Fd~~gD-~~~~y~I~~~~~~~~~~~y~~vg~w~~~~~l-------- 475 (878)
T KOG1056|consen 406 TSGLCSAMKAID-GSLLLKYLLNVNFTGPAGSVRFDENGD-GPGRYDILNYQLTNGSYTYKEVGYWSEGLSL-------- 475 (878)
T ss_pred ccccCcCccccC-HHHHHhhhheeEEecCCCceeecCCCC-CccceeEEEeeccCCCccceeeeeecccccc--------
Confidence 345788887765 999999999999999999999999999 57999999998543 45999999886533
Q ss_pred ccCCCCCCCCcccceeeEeCCCCcCCCccccc
Q 008904 426 YRKPANRSSSNQHLYSVVWPGGVTSKPRGWVF 457 (549)
Q Consensus 426 ~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~ 457 (549)
+.+.+.|.++....|.|+|.
T Consensus 476 ------------~i~~~~w~~~~~~v~~S~CS 495 (878)
T KOG1056|consen 476 ------------NIEDLDWTTKPSGVPKSVCS 495 (878)
T ss_pred ------------cceeeeeccCCCCCcccccc
Confidence 23578899999889999984
|
|
| >cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-47 Score=380.15 Aligned_cols=370 Identities=18% Similarity=0.267 Sum_probs=298.7
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
+||++|+.+. ...+.|+++|+++||.+..++++.+|.+++.++. +|+..+++++|++++++|.|||||.+|..+.+
T Consensus 1 ~iG~if~~~~---~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~ll~~~V~aiiGp~~s~~~~~ 77 (382)
T cd06380 1 PIGGLFDVDE---DQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAICSQLSRGVFAIFGSYDKSSVNT 77 (382)
T ss_pred CceeEECCCC---hHHHHHHHHHHHHhcccccccCCeeeeeeeeEecccchHHHHHHHHHHHhcCcEEEEecCcHHHHHH
Confidence 4899999983 6789999999999999877778888888787765 79999999999999999999999999999999
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhc
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI 186 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~ 186 (549)
++++++.++||+|+++++.+.++ ..++|+||+.|+. ..++++++++++|++|++||+++. +...++.+.+.+++.
T Consensus 78 ~~~~~~~~~iP~i~~~~~~~~l~-~~~~~~fr~~p~~---~~a~~~~~~~~~wk~vaii~~~~~-~~~~~~~~~~~~~~~ 152 (382)
T cd06380 78 LTSYSDALHVPFITPSFPTNDLD-DGNQFVLQMRPSL---IQALVDLIEHYGWRKVVYLYDSDR-GLLRLQQLLDYLREK 152 (382)
T ss_pred HHHHHhcCCCCeEecCCCcccCC-CCCcEEEEeccch---hHHHHHHHHhcCCeEEEEEECCCc-chHHHHHHHHHHhcc
Confidence 99999999999999988877764 3678999999863 468999999999999999997664 667778888888888
Q ss_pred C--eEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCC
Q 008904 187 R--CKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKS 264 (549)
Q Consensus 187 g--~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~ 264 (549)
| +.|.... +... ....++..+|++||+.++++||+.+..+++..++++|+++||..++|+||++++.....+.
T Consensus 153 g~~i~v~~~~-~~~~--~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~i~~qa~~~gm~~~~y~~i~~~~~~~~~~~-- 227 (382)
T cd06380 153 DNKWQVTARR-VDNV--TDEEEFLRLLEDLDRRKEKRIVLDCESERLNKILEQIVDVGKNRKGYHYILANLGFDDIDL-- 227 (382)
T ss_pred CCceEEEEEE-ecCC--CcHHHHHHHHHHhhcccceEEEEECCHHHHHHHHHHHHHhhhcccceEEEEccCCcccccH--
Confidence 8 6665432 3321 2357899999999999999999999999999999999999999999999998765444322
Q ss_pred cCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCCcccc
Q 008904 265 PLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (549)
Q Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 338 (549)
........++.++....+..+..++|.++|++.++.. ..+..+++++||||+++|+|++++.+.+......
T Consensus 228 ---~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~aa~aYDav~~~a~Al~~~~~~~~~~~~~ 304 (382)
T cd06380 228 ---SKFLFGGVNITGFQLVDNTNPTVQKFLQRWKKLDPREWPGAGTSPIKYTAALAHDAVLVMAEAFRSLRRQRGSGRHR 304 (382)
T ss_pred ---HHhccCceeeEEEeccCCCCHHHHHHHHHHHhcCccccCcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 1112233456777766667788999999999887521 2366789999999999999999986543211000
Q ss_pred CCccccCCCCCccccCC--ccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCCC
Q 008904 339 NDTKLNGLGGGTLNLGA--LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSG 416 (549)
Q Consensus 339 ~~~~~~~~~~~~~~c~~--~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~ 416 (549)
.......+...|.. ..+|.+|..|.++|++++|+|++|+|.||++|+|.+..++|+++++++. ++||.|++..|
T Consensus 305 ---~~~~~~~~~~~C~~~~~~~~~~g~~i~~~l~~~~~~G~tG~i~Fd~~G~~~~~~~~i~~~~~~~~-~~vg~w~~~~g 380 (382)
T cd06380 305 ---IDISRRGNGGDCLANPAVPWEHGIDIERALKKVQFEGLTGNVQFDEFGQRTNYTLDVVELKTRGL-RKVGYWNEDDG 380 (382)
T ss_pred ---cccccCCCCCcCCCCCCCCccchHHHHHHHHhcccCCcccceEECCCCCcccccEEEEEecCCCc-eEEEEECCCcC
Confidence 00001123445753 3568889999999999999999999999999999888999999998787 99999999876
Q ss_pred C
Q 008904 417 L 417 (549)
Q Consensus 417 l 417 (549)
+
T Consensus 381 ~ 381 (382)
T cd06380 381 L 381 (382)
T ss_pred c
Confidence 4
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita |
| >cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=375.86 Aligned_cols=360 Identities=18% Similarity=0.278 Sum_probs=294.0
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecC-CCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDA-KFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~-~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
+||+||+... ...+.||++|++.+|.. +.+|.+++... ..|++.+.+++|+++++||.|||||.+|..+.+
T Consensus 1 ~ig~if~~~~---~~~~~af~~a~~~~n~~-----~~~l~~~~~~~~~~dsf~~~~~~C~~~~~GV~AI~Gp~ss~~~~~ 72 (370)
T cd06389 1 QIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNT 72 (370)
T ss_pred CCceeecCCc---hHHHHHHHHHHHHhccc-----CceeeeeeEEecccchHHHHHHHHHHhhcCcEEEEecCCHHHHHH
Confidence 4899999765 35789999999999986 35777655433 358999999999999999999999999999999
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhc
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI 186 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~ 186 (549)
++++|+.++||+|+++++ ++..++|.+++.|+ +..++++++++|+|++|++||+ +++|...++.+.+.+++.
T Consensus 73 v~~i~~~~~IP~I~~~~~----~~~~~~f~~~~~p~---~~~ai~d~i~~~~wk~vailYd-sd~gl~~lq~l~~~~~~~ 144 (370)
T cd06389 73 ITSFCGTLHVSFITPSFP----TDGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLYD-SDRGLSTLQAVLDSAAEK 144 (370)
T ss_pred HHHhhccCCCCeeeecCC----CCCCCceEEEecch---hhhHHHHHHHhcCCcEEEEEec-CchHHHHHHHHHHhhccC
Confidence 999999999999997544 23357888899988 5799999999999999999997 569999999999999999
Q ss_pred CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcC
Q 008904 187 RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPL 266 (549)
Q Consensus 187 g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 266 (549)
|+.|...............+++.+|++|++.++++||+.|+.+.+..++++|.++||+.++|+||+++......+.
T Consensus 145 g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~l---- 220 (370)
T cd06389 145 KWQVTAINVGNINNDRKDEAYRSLFQDLENKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL---- 220 (370)
T ss_pred CceEEEEEeecCCCccchHHHHHHHHHhccccceEEEEECCHHHHHHHHHHHHHhCccccceEEEEccCCccccch----
Confidence 9887644321111012356899999999999999999999999999999999999999999999998764433222
Q ss_pred ChhhHhhccceEEEeEecCCChhHHHHHHHHHh----hcCC--CCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCC
Q 008904 267 SLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT----LSNG--SIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSND 340 (549)
Q Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~----~~~~--~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 340 (549)
........++.+++...+..+..++|.++|++ .+.. ...+...++++||||+++++|++++.........
T Consensus 221 -~~~~~~~~nitg~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~aAl~yDAV~v~a~A~~~l~~~~~~~~~--- 296 (370)
T cd06389 221 -SKIQFGGANVSGFQIVDYDDPLVSKFIQRWSTLEEKEYPGAHTKTIKYTSALTYDAVQVMTEAFRNLRKQRIEISR--- 296 (370)
T ss_pred -hhhccCCcceEEEEEecCCCchHHHHHHHHHhcCccccCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHcCCCccc---
Confidence 11222345688888888888999999999986 4421 2356788999999999999999998543322110
Q ss_pred ccccCCCCCccccCC--ccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCCCCc
Q 008904 341 TKLNGLGGGTLNLGA--LSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLS 418 (549)
Q Consensus 341 ~~~~~~~~~~~~c~~--~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~l~ 418 (549)
.+++..|.. ..+|.+|..|.++|++++|+|+||+|.||++|+|.++.++|+++++++. ++||.|++..||+
T Consensus 297 ------~~~~~~C~~~~~~~w~~G~~i~~~l~~~~~~GlTG~i~Fd~~G~r~~~~~~ii~l~~~g~-~kvG~W~~~~~~~ 369 (370)
T cd06389 297 ------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLTGNIKFDQNGKRINYTINVMELKSNGP-RKIGYWSEVDKMV 369 (370)
T ss_pred ------CCCCCCcCCCCCCCCCCcHHHHHHHHhcccCccccceEeCCCCccccceEEEEEecCCcc-eEEEEEcCCCCcc
Confidence 122346753 5689999999999999999999999999999999988999999998888 9999999988764
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). |
| >cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=380.16 Aligned_cols=339 Identities=18% Similarity=0.260 Sum_probs=289.7
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH-
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM- 103 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~- 103 (549)
.|+||++||.+. .+.+++.|+..+|.+..+..+++++++..|+.+||.++++++|+++.+ +|.+|+||.+|..
T Consensus 2 ~~~ig~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~l~~~d~~~d~~~~~~~~~~~l~~~~v~~iig~~~s~~~ 76 (362)
T cd06367 2 TVNIGVVLSGSS-----SEPAFRDAVTAANFRHNLPYNLSLEAVAVSNDTDPISLLLSVCDLLVVQVVAGVVFSDPTDEE 76 (362)
T ss_pred ceEEEEEecCCc-----chhhHHHHhhhccccccCCcccceEEEEEecCCCHHHHHHHHHHHhcccceEEEEecCCCCcc
Confidence 589999999873 358999999999987755568999999999999999999999998865 8999999999998
Q ss_pred --HHHHHHhhhhcCCcEEecccCCCCC-CC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHH
Q 008904 104 --AHVLSHLANELQVPLLSFTALDPTL-SP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 104 --~~~va~~~~~~~iP~Is~~~~~~~l-s~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l 179 (549)
+.+++.+++.++||+|+++++++.+ ++ ..|||+||+.|++..+++++++++++|+|++|++||+++++|+...+.+
T Consensus 77 ~~~~~~~~v~~~~~iP~Is~~~~~~~~~s~~~~~~~~~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~~g~~~~~~l 156 (362)
T cd06367 77 AVAQILDFTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGYRDFLDRV 156 (362)
T ss_pred chhhhhhhhhhhhcCcEEEeeccccccccCCCcccceEeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHH
Confidence 9999999999999999999998888 77 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCeE--EEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc
Q 008904 180 GDKLAEIRCK--ISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (549)
Q Consensus 180 ~~~~~~~g~~--v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (549)
++.+++.|+| +.....++.. ...++...+.++++.++++||++|+..++..++++|.++||+.++|+||+++.+.
T Consensus 157 ~~~l~~~g~~~~i~~~~~~~~~---~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~g~~~~~~~wI~~~~~~ 233 (362)
T cd06367 157 ETTLEESFVGWEFQLVLTLDLS---DDDGDARLLRQLKKLESRVILLYCSKEEAERIFEAAASLGLTGPGYVWIVGELAL 233 (362)
T ss_pred HHHHHhcccceeeeeeEEeccC---CCcchHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHHcCCCCCCcEEEECcccc
Confidence 9999999998 7666555543 1227788899999999999999999999999999999999999999999999876
Q ss_pred cccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccc
Q 008904 258 TFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (549)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 337 (549)
.... .......|++++++..+ ..+.+++||||+++|+|+++++++.....
T Consensus 234 ~~~~-------~~~~~~~G~~g~~~~~~----------------------~~~~~~~~Dav~~~a~Al~~~~~~~~~~~- 283 (362)
T cd06367 234 GSGL-------APEGLPVGLLGVGLDTW----------------------YSLEARVRDAVAIVARAAESLLRDKGALP- 283 (362)
T ss_pred cccC-------CccCCCCeeEEEEeccc----------------------ccHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 4211 12245678999987542 23477899999999999999987633211
Q ss_pred cCCccccCCCCCccccCCcc--ccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEe-eCceeeEEeEeeC
Q 008904 338 SNDTKLNGLGGGTLNLGALS--IFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQIGYWSN 413 (549)
Q Consensus 338 ~~~~~~~~~~~~~~~c~~~~--~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~-~~~~~~~VG~w~~ 413 (549)
.....|.... .|.+|..|.++|++++|.|.+|+|.||++|+|.++.|+|++++ +.++ ++||.|++
T Consensus 284 ----------~~~~~C~~~~~~~~~~g~~l~~~l~~~~f~G~tg~v~F~~~G~~~~~~~~I~~l~~~~~~-~~VG~W~~ 351 (362)
T cd06367 284 ----------EPPVNCYDTANKRESSGQYLARFLMNVTFDGETGDVSFNEDGYLSNPKLVIINLRRNRKW-ERVGSWEN 351 (362)
T ss_pred ----------CCCCCcCCCCCCCCCchHHHHHHHhcccccCCCCceeECCCcccccceEEEEEecCCCcc-eEEEEEcC
Confidence 1234576643 2778999999999999999999999999999988999999998 5565 99999975
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits |
| >cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=372.54 Aligned_cols=351 Identities=16% Similarity=0.236 Sum_probs=285.0
Q ss_pred EEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 31 AIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 31 ~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+|+|.+. ......+.|+++|+++||+++++++|++|+++++|++|++..+.+.+..+..++|.|||||.||..+.++
T Consensus 4 ~l~p~~~~~~~~~~~~~~a~~lAie~IN~~~~ll~g~~l~~~~~d~~~~~~~~~~~~~~l~~~~v~aiiGp~~s~~~~~v 83 (387)
T cd06386 4 VLLPQNNSYLFSSARVAPAIEYAQRRLEANRLLFPGFRFNVHYEDSDCGNEALFSLVDRSCARKPDLILGPVCEYAAAPV 83 (387)
T ss_pred EECCCCCCcceehhhhHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCcCCchHHHHHHHHHHhhCCCEEECCCCccHHHHH
Confidence 5666542 2235678999999999999999989999999999999988766666666666799999999999999999
Q ss_pred HHhhhhcCCcEEecccCCCCCCC-C-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccch---HHHHHHH
Q 008904 108 SHLANELQVPLLSFTALDPTLSP-L-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG---VTALGDK 182 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~-~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~---~~~l~~~ 182 (549)
+++++.++||+|+++++++.+++ . .||++||+.|++..++.++++++++|+|++|++||+++++++.. .+.+.+.
T Consensus 84 a~ia~~~~iP~Is~~a~~~~~s~~~~~yp~~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy~~~~~~~~~~~~~~~l~~~ 163 (387)
T cd06386 84 ARLASHWNIPMISAGALAAGFSHKKSEYSHLTRVAPSYVKMGETFSALFERFHWRSALLVYEDDKQERNCYFTLEGVHHV 163 (387)
T ss_pred HHHHHhCCCcEEccccCchhhccCcccCCeeEEecCchHHHHHHHHHHHHhCCCeEEEEEEEcCCCCccceehHHHHHHH
Confidence 99999999999999998888876 3 68999999999999999999999999999999999999998776 8899999
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccc---
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF--- 259 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~--- 259 (549)
+++.|++|+.....+. ...++..+|+++++.+ |+||++++.+.+..++++|+++||+..+|+||..+...+.
T Consensus 164 ~~~~gi~v~~~~~~~~----~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~A~~~gm~~~~yv~i~~d~~~~~~~~ 238 (387)
T cd06386 164 FQEEGYHMSIYPFDET----KDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLAAHRRGLTSGDYIFFNIELFNSSSYG 238 (387)
T ss_pred HHhcCceEEEEecCCC----CcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEecccccccC
Confidence 9999999987655442 2568999999999887 9999999999999999999999999999999999865311
Q ss_pred ---cCCCCcCChh---hHhhccceEEEeEecCCChhHHHHHHHHHhhcCC------CCCCCchhhhHhHHHHHHHHHHHH
Q 008904 260 ---IDSKSPLSLK---TAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIGLNPYGLYAYDTVWMIARALKL 327 (549)
Q Consensus 260 ---~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~yDav~~~a~Al~~ 327 (549)
+...+..+.. ......|+.++ .+..+.+++|.+++++++.. ...++.+++++||||+++|+|+++
T Consensus 239 ~~~w~~~~~~~~~~~~a~~~~~~v~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~aa~~yDav~l~A~Al~~ 315 (387)
T cd06386 239 DGSWKRGDKHDFEAKQAYSSLNTVTLL---RTVKPEFEKFSMEVKSSVEKAGDLNDCDYVNMFVEGFHDAILLYALALHE 315 (387)
T ss_pred CCCCccCCCcCHHHHHHHHhheEEecc---CCCChHHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1100111111 22334444443 34457788888888743321 112447889999999999999999
Q ss_pred HHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEe--eCcee
Q 008904 328 FLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI--EHGYP 405 (549)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~--~~~~~ 405 (549)
++..+.. +.+|..|.++|++++|+|++|.+.||++|+|. ..|.|+.++ +++.+
T Consensus 316 ~~~~g~~------------------------~~~g~~l~~~l~~~~f~G~tG~v~~d~~g~r~-~~~~v~~~~~~~~~~~ 370 (387)
T cd06386 316 VLKNGYS------------------------KKDGTKITQRMWNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTY 370 (387)
T ss_pred HhhCCCC------------------------CCCHHHHHHHHhCCceeeccccEEECCCCCcc-ccEEEEEccCCCCccE
Confidence 8754321 23599999999999999999999999999984 699999996 45556
Q ss_pred eEEeEeeCC
Q 008904 406 QQIGYWSNY 414 (549)
Q Consensus 406 ~~VG~w~~~ 414 (549)
+.||.|...
T Consensus 371 ~~~~~~~~~ 379 (387)
T cd06386 371 EVVGNYFGK 379 (387)
T ss_pred EEEeEEccc
Confidence 999999753
|
Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation. |
| >cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=376.45 Aligned_cols=354 Identities=25% Similarity=0.366 Sum_probs=294.6
Q ss_pred CCCceEEEEEEeccCCC---------------------CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHH
Q 008904 22 LKPEVLNVGAIFSFGTV---------------------NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLS 80 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---------------------~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a 80 (549)
..++++.||++||.|.. .|.....|+++|+++||+++++|+|++|+++++|+|+ +..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~a~~lAv~~IN~~ggil~g~~l~~~~~D~~~-~~~a 80 (410)
T cd06363 2 RLPGDYLLGGLFPLHYATSALPHRRPEPLDCSSYRFNLSGYRLFQAMRFAVEEINNSTSLLPGVTLGYEIFDHCS-DSAN 80 (410)
T ss_pred CCCCCEEEEEEeECcccccccccCCCCCccCccCccCHHHHHHHHHHHHHHHHHhCCCccCCCCeeceEEEecCC-cHHH
Confidence 46899999999999841 2556789999999999999999999999999999977 7779
Q ss_pred HHHHHHHHh----------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCc
Q 008904 81 IMGALQFME----------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPND 143 (549)
Q Consensus 81 ~~~~~~l~~----------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~ 143 (549)
++.+.+++. ++|.+||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++
T Consensus 81 ~~~~~~li~~~~~~~~~~c~~~~~~~~V~aIiGp~~S~~~~av~~i~~~~~vp~is~~~~~~~lt~~~~~~~~fr~~~~~ 160 (410)
T cd06363 81 FPPTLSLLSVNGSRIEPQCNYTNYQPRVVAVIGPDSSTLALTVAPLFSFFLIPQISYGASSEVLSNKELYPSFLRTVPSD 160 (410)
T ss_pred HHHHHHHHhccCcccCcccccccCCCCeEEEECCCccHHHHHHHHHhcccccccccccccCccccccccCCCeeEecCCc
Confidence 999999874 58999999999999999999999999999999998888887 5789999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEE
Q 008904 144 LYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIV 223 (549)
Q Consensus 144 ~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vii 223 (549)
..++.++++++.+++|++|++|+++++||....+.+.+.+++.|+++.....++... ....++..++.+|+++++++|+
T Consensus 161 ~~~~~al~~~l~~~~~k~vaii~~~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~-~~~~d~~~~l~~i~~~~~dvIi 239 (410)
T cd06363 161 KDQIEAMVQLLQEFGWNWVAFLGSDDEYGRDGLQLFSELIANTGICIAYQGLIPLDT-DPETDYQQILKQINQTKVNVIV 239 (410)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEeCChhHHHHHHHHHHHHHHCCeEEEEEEEecCCC-chHHHHHHHHHHHhcCCCeEEE
Confidence 999999999999999999999999999999999999999999999999887776420 2367899999999999999999
Q ss_pred EEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCC
Q 008904 224 VHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG 303 (549)
Q Consensus 224 l~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 303 (549)
+.+..+.+..++++++++|+. +..||+++.+........ ........+++++....+..+.+++|.+.
T Consensus 240 l~~~~~~~~~il~qa~~~g~~--~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~f~~~------- 307 (410)
T cd06363 240 VFASRQPAEAFFNSVIQQNLT--GKVWIASEAWSLNDELPS---LPGIRNIGTVLGVAQQTVTIPGFSDFIYS------- 307 (410)
T ss_pred EEcChHHHHHHHHHHHhcCCC--CCEEEEeCcccccccccC---CccceeeccEEEEEeCCCCCccHHHHHHH-------
Confidence 999999999999999999985 348898876542211100 11112344677777777777788888876
Q ss_pred CCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEE
Q 008904 304 SIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHF 383 (549)
Q Consensus 304 ~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~f 383 (549)
+++.+||||+++|+|+++++.++.. .|...... +++.|.++|++++|.|++|++.|
T Consensus 308 ------~~~~~YDaV~~~a~Al~~a~~~~~~-----------------~~~~~~~~-~~~~l~~~L~~~~~~g~~g~i~f 363 (410)
T cd06363 308 ------FAFSVYAAVYAVAHALHNVLQCGSG-----------------GCPKRVPV-YPWQLLEELKKVNFTLLGQTVRF 363 (410)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhCCCCC-----------------CCCCCCCC-CHHHHHHHHhccEEecCCcEEEe
Confidence 3567899999999999999766432 23321222 47889999999999999999999
Q ss_pred ccCCCCCCCceEEEEEeeC---ceeeEEeEeeCC
Q 008904 384 NQDRSLLHPSYDIINVIEH---GYPQQIGYWSNY 414 (549)
Q Consensus 384 d~~g~r~~~~~~I~~~~~~---~~~~~VG~w~~~ 414 (549)
|++|++ ...|.|++++.. ..+++||.|++.
T Consensus 364 d~~G~~-~~~~~i~~~~~~~~~~~~~~vG~~~~~ 396 (410)
T cd06363 364 DENGDP-NFGYDIVVWWWDNSSGTFEEVGSYSFY 396 (410)
T ss_pred CCCCCC-ccceEEEEEEEcCCceeEEEEEEEECC
Confidence 999995 567999999532 245999999974
|
Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors. |
| >cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=367.94 Aligned_cols=358 Identities=18% Similarity=0.283 Sum_probs=281.6
Q ss_pred EEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||++.|.+. ..+.....|+++|+++||+++++++|++|++.+.|++|++..++..+++++.+ +|.+||||.||..
T Consensus 1 ~vg~~~p~~~~~~~~~~~~~~a~~lAi~~IN~~~~~l~~~~l~~~~~D~~~~~~~a~~~~~~l~~~~~v~aiiGp~~S~~ 80 (391)
T cd06372 1 TVGFQAPWNISHPFSAQRLGAALQIAMDKVNSDPVYLGNYSMEFTYTNSTCSAKESLAGFIDQVQKEHISALFGPACPEA 80 (391)
T ss_pred CceeeccccccCchhhhhHHHHHHHHHHHHhcCCCCCCCceEEEEEecCCCCccHHHHHHHHHHHhcCceEEECCCCCcH
Confidence 4899998752 24556678999999999999999999999999999999999999999999875 9999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC---Cccc--chHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGR--NGVT 177 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~---~~g~--~~~~ 177 (549)
+.+++++++.+++|+|+++++++.+++ ..||+++|+.|++..++.++++++++|+|++|++||+++ .++. ...+
T Consensus 81 ~~av~~va~~~~iP~is~~s~s~~ls~~~~~~~~~r~~p~~~~~~~a~~~l~~~~~w~~vaii~~~~~~~~~~~~~~~~~ 160 (391)
T cd06372 81 AEVTGLLASQWNIPMFGFVGQTAKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIGLFGGSSRDSSWDEVDELWK 160 (391)
T ss_pred HHHHHHHHhccCccEEEeecCCccccccccCCceEEecCchhhHHHHHHHHHHHCCCeEEEEEEeccccchhhhHHHHHH
Confidence 999999999999999999999999987 578999999999999999999999999999999998643 2331 1233
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (549)
.+.+.++ .++++.....++.. ..++...+.+.+++++|+||++++.+.+..++++|+++||..++|+||.+....
T Consensus 161 ~~~~~~~-~~~~i~~~~~~~~~----~~d~~~~~l~~~~~~~~vii~~~~~~~~~~i~~~a~~~g~~~~~y~~i~~~~~~ 235 (391)
T cd06372 161 AVENQLK-FHFNITATVRYSSS----NPDLLQEKLRYISSVARVIILICSSEDAKAILQAAEKLGLMKGKFVFFLLQQFE 235 (391)
T ss_pred HHHHHHh-hCEEEEEEEecCCC----ChHHHHHHHHhhhccceEEEEEcChHHHHHHHHHHHHcCCCCCCEEEEEehhhc
Confidence 4444443 57888887776644 455555555555688999999999999999999999999988889999964322
Q ss_pred cccCCCCc---CChhhHhhccceEEEeEecCC-ChhHHHHHHHHHhhcCCCC---------CCCchhhhHhHHHHHHHHH
Q 008904 258 TFIDSKSP---LSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSI---------GLNPYGLYAYDTVWMIARA 324 (549)
Q Consensus 258 ~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~---------~~~~~~~~~yDav~~~a~A 324 (549)
..+..... ........+.|++++.+..+. .+..++|.++|++++.... ....+++++||||+++|+|
T Consensus 236 ~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~~~~~~~~a~~~yDav~~~A~A 315 (391)
T cd06372 236 DNFWKEVLTDDQVQHLPKVYESVFLIAPSSYGGYSGGYEFRKQVYQKLKRPPFQSSLSSEEQVSPYSAYLHDAVLLYALA 315 (391)
T ss_pred CccccccCCCcchHHHHHHHhhEEEEecCCCCCCcchhHHHHHHHHHHhcCCccccccccccchHHHHHHHHHHHHHHHH
Confidence 11100000 012233467788877665432 3456678877776653111 2357889999999999999
Q ss_pred HHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHH---hccccccceeeEEccCCCCCCCceEEEEEee
Q 008904 325 LKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANIL---QTNMTGLSGPIHFNQDRSLLHPSYDIINVIE 401 (549)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~---~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~ 401 (549)
++++++++. .|.+|..+.++|+ +++|+|+||+|.||++|+| .+.|.|++++.
T Consensus 316 l~~~~~~g~------------------------~~~~g~~l~~~l~~~~~~~f~G~tG~v~fd~~G~r-~~~y~i~~~~~ 370 (391)
T cd06372 316 VKEMLKAGK------------------------DFRNGRQLVSTLRGANQVELQGITGLVLLDEQGKR-QMDYSVYALQK 370 (391)
T ss_pred HHHHHhcCC------------------------CCCCHHHHHHHHhhccCceEeccceeEEECCCCCc-ceeEEEEeccc
Confidence 999876532 1335889999999 6899999999999999998 68999999985
Q ss_pred --C-ceeeEEeEeeCCC
Q 008904 402 --H-GYPQQIGYWSNYS 415 (549)
Q Consensus 402 --~-~~~~~VG~w~~~~ 415 (549)
. ..+++||.|+...
T Consensus 371 ~~~~~~~~~vg~~~~~~ 387 (391)
T cd06372 371 SGNSSLFLPFLHYDSHQ 387 (391)
T ss_pred cCCccceeeEEEecchh
Confidence 2 2369999998743
|
This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle. |
| >cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=371.04 Aligned_cols=358 Identities=17% Similarity=0.215 Sum_probs=285.9
Q ss_pred EEEEEeccCCC---Cc-hHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHH-----HHHH-HHhcCcEEEEc
Q 008904 28 NVGAIFSFGTV---NG-QVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM-----GALQ-FMETDTLAIVG 97 (549)
Q Consensus 28 ~IG~l~~~~~~---~g-~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~-----~~~~-l~~~~v~aiiG 97 (549)
+||+++|++.. .| .....|+++|+++||+++++|+|++|++++.|+++++..+.. .+.+ ++.++|.+|||
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~gil~g~~l~~~~~D~~~~~~~c~~~~~~~~~~~~~~~~~v~aiiG 80 (405)
T cd06385 1 TLAVILPLTNTSYPWAWPRVGPALERAIDRVNADPDLLPGLHLQYVLGSSENKEGVCSDSAAPLVAVDLKFTHNPWAFIG 80 (405)
T ss_pred CeeEECCCCCCcCccchhhhHHHHHHHHHHHhcCCCCCCCceEEEEEccccccCCCCccccchHHHHHHHHhcCCcEEEC
Confidence 58999998744 34 667899999999999999999999999999998765543322 2222 23569999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEE-EEEecCCc-ccc
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVI-AIFNDDDQ-GRN 174 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~-ii~~~~~~-g~~ 174 (549)
|.||..+.+++++++.++||+|+++++++.+++ ..|||+||+.|++..++.++++++++|+|++++ ++|.++.. ++.
T Consensus 81 p~~S~~~~~va~~a~~~~iP~Is~~a~~~~l~~~~~~~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~ii~~~~~~~~~~ 160 (405)
T cd06385 81 PGCDYTASPVARFTTHWDVPLVTAGAPALGFGVKDEYATITRTGPTHKKLGEFVLHIHQHFGWRSHAMLIYSDNKVDDRP 160 (405)
T ss_pred CCccchHHHHHHHHhccCCcEEccccChhhcCCcccCcceEEecCchHHHHHHHHHHHHhCCCeEEEEEEEecCcccccc
Confidence 999999999999999999999999999888987 579999999999999999999999999999988 45654432 233
Q ss_pred ---hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 175 ---GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 175 ---~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
..+.+.+.+++.|++|+.....+. +..++..+|+++++.. |+||+++....+..++++|.++||+.++|+||
T Consensus 161 ~~~~~~~l~~~~~~~gi~v~~~~~~~~----~~~d~~~~l~~ik~~~-~iii~~~~~~~~~~i~~~a~~~g~~~~~y~~i 235 (405)
T cd06385 161 CYFAMEGLYMELKKNNITVVDLVFEED----DLINYTTLLQDIKQKG-RVIYVCCSPDIFRRLMLQFWREGLPSEDYVFF 235 (405)
T ss_pred hHHHHHHHHHHHHhCCeEEEEeeccCC----chhhHHHHHHHHhhcc-eEEEEeCCHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 458888899999999988753322 3678999999998754 99999999999999999999999999999999
Q ss_pred EeCCcccccCC---------CCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhh----cCCCC---CCCchhhhHh
Q 008904 252 ATTWLSTFIDS---------KSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL----SNGSI---GLNPYGLYAY 315 (549)
Q Consensus 252 ~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~---~~~~~~~~~y 315 (549)
+++++...... .+..+.....++++++......+..+.+++|.++|+++ ++... .++.+++++|
T Consensus 236 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aa~~Y 315 (405)
T cd06385 236 YIDLFGASLQGPDPKRPWYRGDADDAAAREAFQSVKILTYKEPQNPEYKEFLSDLKTDAKEMFNFTVEDSLMNIIAGGFY 315 (405)
T ss_pred EeecchhhccCCCCCCCCCCCCcccHHHHHhhheeEEEeCCCCCChhHHHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Confidence 98764322111 01111234567788887776666678899999999885 44221 1557888999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceE
Q 008904 316 DTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYD 395 (549)
Q Consensus 316 Dav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~ 395 (549)
|||+++|.|++++.+..+. +.+|..|.++|++++|+|++|.|.||++|+| ...|.
T Consensus 316 Dav~l~a~Al~~~~~~~~~------------------------~~~g~~i~~~l~~~~f~G~tG~v~fd~~G~r-~~~~~ 370 (405)
T cd06385 316 DGVMLYAHALNETMAKGGT------------------------RPPGTAITQRMWNRTFYGVTGFVKIDDNGDR-ETDFA 370 (405)
T ss_pred HHHHHHHHHHHHHHhcCCC------------------------CCCHHHHHHHhhCceEeeceeEEEEcCCCCE-eceeE
Confidence 9999999999998654321 3358999999999999999999999999998 47888
Q ss_pred EEEEe--eCceeeEEeEeeCCC
Q 008904 396 IINVI--EHGYPQQIGYWSNYS 415 (549)
Q Consensus 396 I~~~~--~~~~~~~VG~w~~~~ 415 (549)
+++++ .++.++.||.|+...
T Consensus 371 ~~~~~~~~~g~~~~v~~~~~~~ 392 (405)
T cd06385 371 LWDMTDTESGDFQVVSVYNGTQ 392 (405)
T ss_pred EEEccCCCCCcEEEEEEEcccC
Confidence 88764 234459999998643
|
Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure. |
| >cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=367.18 Aligned_cols=347 Identities=18% Similarity=0.286 Sum_probs=287.1
Q ss_pred EEEEEEeccCC----CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 27 LNVGAIFSFGT----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 27 i~IG~l~~~~~----~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
|+||++.|++. ..|.....|+++|+++||+++++++|++|++++.|+++++..+++.+++++.++|.+||||.+|.
T Consensus 1 i~iG~~~pltG~~~a~~G~~~~~a~~lAv~~IN~~ggil~g~~l~l~~~D~~~~~~~a~~~~~~li~~~v~aiiGp~~S~ 80 (404)
T cd06370 1 IKVGYLAEWTTDRTDRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTHGDEVLSIRAVSDWWKRGVVAFIGPECTC 80 (404)
T ss_pred CeeEecccccCCccccccccHHHHHHHHHHHHhCCCCCCCCCEEEEEEEecCCChHHHHHHHHHHHhcCceEEECCCchh
Confidence 68999999975 45888899999999999999999899999999999999999999999999999999999999984
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~ 181 (549)
. +++.+++.++||+|+++++++.+++ ..||+|||+.|++..++.++++++++++|++|++|+++++||....+.+++
T Consensus 81 ~--~~a~i~~~~~iP~Is~~a~~~~l~~~~~~~~f~r~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~~g~~~~~~~~~ 158 (404)
T cd06370 81 T--TEARLAAAWNLPMISYKCDEEPVSDKSKYPTFARTVPPSIQVVKSVIALLKHFNWNKFSVVYENDSKYSSVFETLKE 158 (404)
T ss_pred H--HHHHHHhhcCCcEEecccCCccccccccCCCeEEcCCCHHHHHHHHHHHHHHCCCcEEEEEEecCcccHHHHHHHHH
Confidence 4 4567999999999999999888887 478999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCeEEEEEEccCCCCC---CChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCC-CCCeEEEEeCCcc
Q 008904 182 KLAEIRCKISYKSALPPDQS---VTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM-DSGYVWIATTWLS 257 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~-~~~~~~i~~~~~~ 257 (549)
.+++.|++|+..+.++.... ....++..++++++.. ++++|+++...++..++++|+++||. ..+|+||+.+...
T Consensus 159 ~~~~~g~~iv~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~~~~~l~qa~~~g~~~~~~y~~i~~~~~~ 237 (404)
T cd06370 159 EAELRNITISHVEYYADFYPPDPIMDNPFEDIIQRTKET-TRIYVFIGEANELRQFLMSMLDEGLLESGDYMVLGVDIEY 237 (404)
T ss_pred HHHHcCCEEEEEEEECCCCCchhhhHHHHHHHHHhccCC-CEEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEEEchhh
Confidence 99999999998887765310 0146788888888765 67888888778899999999999998 6889999876321
Q ss_pred ccc---------------CCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCC------------CCCCCch
Q 008904 258 TFI---------------DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------------SIGLNPY 310 (549)
Q Consensus 258 ~~~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------------~~~~~~~ 310 (549)
... ............+++|++.+....+ .+.+++|.+.|++.+.. ...++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (404)
T cd06370 238 YDRDSQDYYSLHRGFQSREYNRSDDEKALEAMKSVLIIVPTPV-SPDYDSFSIFVRKYNLEPPFNGDLGESELVLEIDIE 316 (404)
T ss_pred ccccchhhhhhhhhhccccccccccHHHHHHhHheEEEecCCC-CchHHHHHHHHHHhccCCCCccccccccccccccee
Confidence 110 1001111244457888887765444 66778899999876431 1235678
Q ss_pred hhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCC
Q 008904 311 GLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSL 389 (549)
Q Consensus 311 ~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r 389 (549)
++++||||+++|+|++++++++... .++..|.++|++++|+|+|| +|.||++|+|
T Consensus 317 aa~~yDAv~~~a~Al~~~~~~~~~~------------------------~~g~~i~~~l~~~~f~GvtG~~v~fd~~G~~ 372 (404)
T cd06370 317 AAYLYDAVMLYAKALDETLLEGGDI------------------------YNGTAIVSHILNRTYRSITGFDMYIDENGDA 372 (404)
T ss_pred eehhHHHHHHHHHHHHHHHHhcCCC------------------------CCHHHHHHHHhCcccccccCceEEEcCCCCc
Confidence 8999999999999999987654321 14889999999999999999 8999999997
Q ss_pred CCCceEEEEEeeC
Q 008904 390 LHPSYDIINVIEH 402 (549)
Q Consensus 390 ~~~~~~I~~~~~~ 402 (549)
...|.|++++..
T Consensus 373 -~~~y~v~~~~~~ 384 (404)
T cd06370 373 -EGNYSVLALQPI 384 (404)
T ss_pred -ccceEEEEeccc
Confidence 588999999743
|
Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model. |
| >cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=359.53 Aligned_cols=338 Identities=40% Similarity=0.712 Sum_probs=297.1
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~~ 105 (549)
+||+++|++ +..|.....++++|+++||+++++++|++|+++++|+++++..+++.+++|+.+ +|.+||||.+|..+.
T Consensus 1 ~IG~~~p~sGa~~G~~~~~~~~lAv~~iN~~gg~~~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~~v~~viG~~~s~~~~ 80 (350)
T cd06366 1 RIGAIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALDLLENKPVVAIIGPQCSSVAE 80 (350)
T ss_pred CEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCcCCCcEEEEEecCCCCCHHHHHHHHHHHhccCCceEEECCCcHHHHH
Confidence 699999999 788899999999999999999977789999999999999999999999999987 999999999999999
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHh
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLA 184 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~ 184 (549)
+++++++.+++|+|+++++++.+++ ..+||+||+.|++..++.++++++++++|++|++|+.++++|....+.+.+.++
T Consensus 81 a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~ 160 (350)
T cd06366 81 FVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQ 160 (350)
T ss_pred HHHHHhhcCCeeEEeccCCCccccccccCCceEEcccchHhHHHHHHHHHHHCCCcEEEEEEEcCcccchhHHHHHHHHH
Confidence 9999999999999999998888865 568999999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC-C
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS-K 263 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~-~ 263 (549)
+.|++|+....++.. ....++...+++++++++++|++++...++..++++++++|+....++||.++.+...+.. .
T Consensus 161 ~~g~~v~~~~~~~~~--~~~~d~~~~l~~i~~~~~dvvi~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~ 238 (350)
T cd06366 161 EAGIEISYRAAFPPS--ANDDDITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLSSNWWSSS 238 (350)
T ss_pred HcCCEEEEEeccCCC--CChhHHHHHHHHHhcCCCeEEEEECChHHHHHHHHHHHHcCCcCCCEEEEECcchhhhhccCC
Confidence 999999998888754 2357999999999999999999999999999999999999998888999998865543210 0
Q ss_pred CcCChhhHhhccceEEEeEecCC-ChhHHHHHHHHHhhcCCC----CCCCchhhhHhHHHHHHHHHHHHHHhcCCCcccc
Q 008904 264 SPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGS----IGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~----~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 338 (549)
............|++++..+.+. .+.+++|.++|+++++.. ..+..++++.|||+++
T Consensus 239 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~p~~~a~~~YDav~~------------------ 300 (350)
T cd06366 239 DCTDEEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWRKRFGNENPELTEPSIYALYAYDAVWA------------------ 300 (350)
T ss_pred CCChHHHHHhhceEEEEeecccccCccHHHHHHHHHHHhcccCcCcCCCCcccchhhhheee------------------
Confidence 00113345678899999888777 788999999999988632 1477888999999988
Q ss_pred CCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCCCCc
Q 008904 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLS 418 (549)
Q Consensus 339 ~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~l~ 418 (549)
+.+|+|++|+|+||++|++.+..|+++++.++++ ++||.|++..|+.
T Consensus 301 --------------------------------~~~~~G~~G~v~fd~~~~~~~~~~~~~~~~~~~~-~~vg~~~~~~~~~ 347 (350)
T cd06366 301 --------------------------------STNFNGLSGPVQFDGGRRLASPAFEIINIIGKGY-RKIGFWSSESGLS 347 (350)
T ss_pred --------------------------------eceEEeeeeeEEEcCCCccCCcceEEEEecCCce-EEEEEEeCCCCcc
Confidence 1268899999999999998889999999987777 9999999877653
|
Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. |
| >KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=351.82 Aligned_cols=404 Identities=16% Similarity=0.260 Sum_probs=304.2
Q ss_pred CChHHHHHHHHHHHhc-CcEEEEcCCCch---HHHHHHHhhhhcCCcEEecccCCC-CCCCC-CCCceEEccCCcHHHHH
Q 008904 75 FNGFLSIMGALQFMET-DTLAIVGPQSAV---MAHVLSHLANELQVPLLSFTALDP-TLSPL-QYPFFVQTAPNDLYLMS 148 (549)
Q Consensus 75 ~~~~~a~~~~~~l~~~-~v~aiiGp~~s~---~~~~va~~~~~~~iP~Is~~~~~~-~ls~~-~~~~~~r~~ps~~~~~~ 148 (549)
.||...+..+|+++.. +|.+|+-...|. ++..+--++...+||+|++.+.+. .++++ ....++++.||..+|++
T Consensus 83 tdPkSll~~vC~lvs~~~V~glvf~d~s~~~avaq~LDfiSs~t~iPIisi~gg~a~~~~~kd~gs~flQlg~Sieqqa~ 162 (1258)
T KOG1053|consen 83 TDPKSLLTQVCDLVSGARVHGLVFEDDSDTEAVAQILDFISSQTHIPIISIHGGAAMVLTPKDLGSTFLQLGPSIEQQAQ 162 (1258)
T ss_pred CCHHHHHHHHHhhhhhcceeEEEeecCccchHHHHHHHHHHHhcCCcEEEEecCccceecCCCCcceEEEeCCcHHHHHH
Confidence 6899999999999986 899988765554 333334456678999999865543 34443 34578999999999999
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhh--cCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE--IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 149 ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~--~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
++.++|..|+|..|++|.+.-+..+.++..+++.... .||.+.....+.+. ..+.......++|+.++.||+++|
T Consensus 163 Vml~iL~~ydW~~Fs~vtt~~pg~~~f~~~ir~~~d~s~vgwe~i~v~~l~~s---~~d~~a~~q~qLkki~a~VillyC 239 (1258)
T KOG1053|consen 163 VMLKILEEYDWYNFSLVTTQFPGNRTFVSLIRQTNDNSHVGWEMINVLTLDPS---TDDLLAKLQAQLKKIQAPVILLYC 239 (1258)
T ss_pred HHHHHHHHcCcceeEEEEeecCchHHHHHHHHHhhhhccccceeeeeeecCCC---CCchHHHHHHHHHhcCCcEEEEEe
Confidence 9999999999999999998887777777777777665 36666655555543 222233444566666799999999
Q ss_pred chHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCC
Q 008904 227 YSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIG 306 (549)
Q Consensus 227 ~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 306 (549)
+.+++..|+..|.++|+++++|+||++......-. .-.....|.+...... |+.
T Consensus 240 ~~eea~~IF~~A~q~Gl~g~~y~Wi~pqlv~g~~~-------~pa~~P~GLisv~~~~------------w~~------- 293 (1258)
T KOG1053|consen 240 SREEAERIFEEAEQAGLTGPGYVWIVPQLVEGLEP-------RPAEFPLGLISVSYDT------------WRY------- 293 (1258)
T ss_pred cHHHHHHHHHHHHhcCCcCCceEEEeehhccCCCC-------CCccCccceeeeeccc------------hhh-------
Confidence 99999999999999999999999999765433100 0123456666655422 221
Q ss_pred CCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCcc--ccCchHHHHHHHHhccccccceeeEEc
Q 008904 307 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALS--IFDGGKKFLANILQTNMTGLSGPIHFN 384 (549)
Q Consensus 307 ~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~~l~~~l~~~~f~g~tG~v~fd 384 (549)
...+.+-|+|-++|.|.+.++...+.. ..++.+|.... ....+..+.++|.|+.|+| +.++|+
T Consensus 294 --~l~~rVrdgvaiva~aa~s~~~~~~~l-----------p~~~~~C~~~~~~~~~~~~~l~r~l~NvT~~g--~~lsf~ 358 (1258)
T KOG1053|consen 294 --SLEARVRDGVAIVARAASSMLRIHGFL-----------PEPKMDCREQEETRLTSGETLHRFLANVTWDG--RDLSFN 358 (1258)
T ss_pred --hHHHHHhhhHHHHHHHHHHHHhhcccC-----------CCcccccccccCccccchhhhhhhhheeeecc--cceeec
Confidence 234678999999999999998775542 22345675422 2334889999999999999 789999
Q ss_pred cCCCCCCCceEEEEEeeCceeeEEeEeeCCCCCcccCCcccccCCCCCCCCcccceeeEeCCCCcCCCccccccCCCCeE
Q 008904 385 QDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQL 464 (549)
Q Consensus 385 ~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~~~~~ 464 (549)
++|..+..+.-++.+.++..|.+||.|...+ |.|. ...||.... ...+.+ +..+|
T Consensus 359 ~~g~~v~p~lvvI~l~~~r~We~VG~We~~~-L~M~--------------------y~vWPr~~~---~~q~~~-d~~HL 413 (1258)
T KOG1053|consen 359 EDGYLVHPNLVVIDLNRDRTWERVGSWENGT-LVMK--------------------YPVWPRYHK---FLQPVP-DKLHL 413 (1258)
T ss_pred CCceeeccceEEEecCCCcchheeceecCCe-EEEe--------------------ccccccccC---ccCCCC-Cccee
Confidence 9998888888888888888889999998764 4443 446873221 122222 33578
Q ss_pred EEeecCcccccccEEeec-----------------------------CcceeeeeeHHHHHHHHHhCCCCcCEEEEECCC
Q 008904 465 RIGVPNRVSYRDFVFKVN-----------------------------GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGD 515 (549)
Q Consensus 465 ~v~~~~~~~~~~~~~~~~-----------------------------~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~d 515 (549)
+|+|..+.||+-.+.++. -..||+||||||+++||+.++|+ |++|+|.|
T Consensus 414 ~VvTLeE~PFVive~vDP~t~~C~~ntvpc~s~~~~t~ss~~~~~~tvKkCCkGfCIDiLkKlA~~v~Ft--YDLYlVtn 491 (1258)
T KOG1053|consen 414 TVVTLEERPFVIVEDVDPLTQTCVRNTVPCRSQLNSTFSSGDEANRTVKKCCKGFCIDILKKLARDVKFT--YDLYLVTN 491 (1258)
T ss_pred EEEEeccCCeEEEecCCCCcCcCCCCCCcchhhhhhccCCCccCCchHHhhhhhhhHHHHHHHHhhcCcc--eEEEEecC
Confidence 888777666653322210 16799999999999999999999 99999999
Q ss_pred CC----CCCChHHHHHhHhcCcccEEecceEEeecccC
Q 008904 516 GH----KNPTYSELINQITTGVSRILTKKVAQLTRVSL 549 (549)
Q Consensus 516 g~----~~g~~~gl~~~l~~~~~d~~~~~~ti~~~r~~ 549 (549)
|| .||.||||||+|..++|||||+++|||+||+.
T Consensus 492 GKhGkk~ng~WnGmIGev~~~rA~MAVgSltINeeRSe 529 (1258)
T KOG1053|consen 492 GKHGKKINGVWNGMIGEVVYQRADMAVGSLTINEERSE 529 (1258)
T ss_pred CcccceecCcchhhHHHHHhhhhheeeeeeEechhhhc
Confidence 98 78999999999999999999999999999984
|
|
| >cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=361.73 Aligned_cols=359 Identities=17% Similarity=0.266 Sum_probs=293.5
Q ss_pred EEEEEeccCC----CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC----ChHHHHHHHHHHH-hcCcEEEEcC
Q 008904 28 NVGAIFSFGT----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF----NGFLSIMGALQFM-ETDTLAIVGP 98 (549)
Q Consensus 28 ~IG~l~~~~~----~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~----~~~~a~~~~~~l~-~~~v~aiiGp 98 (549)
+||+++|.+. ..|.....|+++|+++||+++++++|++|++++.|+++ ++..++..+.+++ .++|.+||||
T Consensus 1 ~~g~l~p~~~~~~~~~~~~~~~a~~lAve~IN~~gg~l~G~~l~~~~~D~~~~~~~~~~~a~~~a~~~~~~~~v~aiiGp 80 (396)
T cd06373 1 TLAVLLPKNNTSYPWSLPRVGPAIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLYFQHKPDAFLGP 80 (396)
T ss_pred CeEEEcCCCCCCcccchhhhhhHHHHHHHHHhcCCCcCCCeEEEEEEecCccccccchhhhHHHHHHHHhccCCeEEECC
Confidence 4899999984 23456789999999999999998899999999999998 8899898888876 5599999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcc----c
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQG----R 173 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g----~ 173 (549)
.||..+.+++++++.++||+|+++++++.+++ ..|||+||+.|++..++.++++++++++|++|++|+++++++ .
T Consensus 81 ~~S~~~~av~~~~~~~~ip~Is~~as~~~lt~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vaii~~~~~~~~~~~~ 160 (396)
T cd06373 81 GCEYAAAPVARFAAHWNVPVLTAGAPAAGFSDKSEYSTLTRTGPSYTKLGEFVLALHEHFNWSRAALLYHDDKNDDRPCY 160 (396)
T ss_pred CccchhHHHHHHHhcCCCceECccCCccccccchhcCceeeccccHHHHHHHHHHHHHHcCCeEEEEEEECCCCCcchHH
Confidence 99999999999999999999999999888887 579999999999999999999999999999999999887764 4
Q ss_pred chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
...+.+.+.+++.|++|.... +... ....++..+|+++++.. |+||+++....+..++++++++|+...+|+||..
T Consensus 161 ~~~~~~~~~~~~~g~~v~~~~-~~~~--~~~~d~~~~l~~ik~~~-~vii~~~~~~~~~~~~~qa~~~g~~~~~yv~i~~ 236 (396)
T cd06373 161 FTLEGVYTVLKEENITVSDFP-FDED--KELDDYKELLRDISKKG-RVVIMCASPDTVREIMLAAHRLGLTSGEYVFFNI 236 (396)
T ss_pred HHHHHHHHHHhhcCceeeEEe-ecCC--ccccCHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCcEEEEEE
Confidence 457888889998999987543 4322 11368999999999865 9999999999999999999999999999999997
Q ss_pred CCccccc------C--CCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhh----cCCC---CCCCchhhhHhHHH
Q 008904 254 TWLSTFI------D--SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL----SNGS---IGLNPYGLYAYDTV 318 (549)
Q Consensus 254 ~~~~~~~------~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~----~~~~---~~~~~~~~~~yDav 318 (549)
+...... . ..............+++.+....+..+.+++|.++|+++ ++.. ..+..+++.+||||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav 316 (396)
T cd06373 237 DLFGSSLYGGGPWWWERGDEDDEKAKEAYQALMTITLREPDNPEYKEFSLEVKERAKKKFNTTSDDSLVNFFAGAFYDAV 316 (396)
T ss_pred ccchhhhccCCCCcCCCCCcccHHHHHHHHHheEEecCCCCChHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHH
Confidence 6542211 1 001111233456678888887777778899999999875 3311 13456788999999
Q ss_pred HHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEE
Q 008904 319 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIIN 398 (549)
Q Consensus 319 ~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~ 398 (549)
+++++|++++..+.+. +.++..|.++|++++|+|++|.+.||++|+| ...|.|+.
T Consensus 317 ~~~a~Al~~~~~~~~~------------------------~~~~~~i~~~l~~~~f~G~tG~v~fd~~G~~-~~~~~v~~ 371 (396)
T cd06373 317 LLYALALNETLAEGGD------------------------PRDGTNITRRMWNRTFEGITGNVSIDENGDR-ESDFSLWD 371 (396)
T ss_pred HHHHHHHHHHHhccCC------------------------CCChHHHHHHhcCCceecccCceEeecCCcc-cceeeeee
Confidence 9999999998654321 1248899999999999999999999999997 47788877
Q ss_pred Ee--eCceeeEEeEeeCCC
Q 008904 399 VI--EHGYPQQIGYWSNYS 415 (549)
Q Consensus 399 ~~--~~~~~~~VG~w~~~~ 415 (549)
+. .++.++.+|.|++..
T Consensus 372 ~~~~~~g~~~~~~~~~~~~ 390 (396)
T cd06373 372 MTDTETGTFEVVANYNGSN 390 (396)
T ss_pred ccCCCCceEEEEeeccccc
Confidence 63 345569999998754
|
Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli |
| >cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=358.57 Aligned_cols=360 Identities=20% Similarity=0.370 Sum_probs=307.5
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++ +..|.....|+++|+++||+++++++|++|++++.|+++++..+++.+.+++.+ +|.+||||.+|..
T Consensus 1 kvG~~~~~sG~~~~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~~~~~a~~~a~~l~~~~~v~aiiG~~~s~~ 80 (389)
T cd06352 1 TVGVLLPWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTECSESVALLAAVDLYWEHNVDAFIGPGCPYA 80 (389)
T ss_pred CeEEEcCCCCCCCchhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCCchhhhHHHHHHHHhhcCCcEEECCCChhH
Confidence 599999997 345778899999999999999977689999999999999999999999999865 9999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALGD 181 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l~~ 181 (549)
+.++++++..+++|+|+++++++.+++ ..+||+||+.|++..++.++++++++++|++++++++++. ||....+.+.+
T Consensus 81 ~~a~~~~~~~~~ip~Is~~~~~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~~~~~v~ii~~~~~~~g~~~~~~~~~ 160 (389)
T cd06352 81 CAPVARLAAHWNIPMISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYSDDSENCFFTLEALEA 160 (389)
T ss_pred HHHHHHHHhcCCCCEecccccccccCccccCCceeecCCcHHHHHHHHHHHHHHcCceEEEEEEecCCccHHHHHHHHHH
Confidence 999999999999999999988888876 4789999999999999999999999999999999998887 89999999999
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (549)
.+++.|++|.....++.. ....++..+++++++.. ++|++++...++..++++++++|+...+++||..+.+.....
T Consensus 161 ~~~~~G~~v~~~~~~~~~--~~~~d~~~~l~~i~~~~-~vii~~~~~~~~~~~l~q~~~~g~~~~~~~~i~~~~~~~~~~ 237 (389)
T cd06352 161 ALREFNLTVSHVVFMEDN--SGAEDLLEILQDIKRRS-RIIIMCGSSEDVRELLLAAHDLGLTSGDYVFILIDLFNYSLP 237 (389)
T ss_pred HHHhcCCeEEEEEEecCC--ccchhHHHHHHHhhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEEehhccccc
Confidence 999999999988877743 12578999999999887 999999999999999999999999878899999876654321
Q ss_pred C--------CCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC--------CCCCchhhhHhHHHHHHHHHH
Q 008904 262 S--------KSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS--------IGLNPYGLYAYDTVWMIARAL 325 (549)
Q Consensus 262 ~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~--------~~~~~~~~~~yDav~~~a~Al 325 (549)
. .....+.......|++++.+..+..+.+++|.++|+++++.. ..+..+++.+||||+++++|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al 317 (389)
T cd06352 238 YQNSYPWERGDGDDEKAKEAYDAVLTITLRPPDNPEYEEFSEEVKEAAKRPPFNTDAEPEQVSPYAGYLYDAVLLYAHAL 317 (389)
T ss_pred cCCCCCcccCCcccHHHHHHHHhheEEEecCCCCchHHHHHHHHHHHHhcccCccCCCccccchhhhhHHHHHHHHHHHH
Confidence 1 011123445677888888887777788999999999887521 245678999999999999999
Q ss_pred HHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeC-ce
Q 008904 326 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH-GY 404 (549)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~-~~ 404 (549)
+++..++.. |.++..+.+.|++++|.|++|++.||++|+| ...|.|+++++. +.
T Consensus 318 ~~~~~~~~~------------------------~~~~~~v~~~l~~~~f~g~~G~v~fd~~G~~-~~~~~v~~~~~~~~~ 372 (389)
T cd06352 318 NETLAEGGD------------------------YNGGLIITRRMWNRTFSGITGPVTIDENGDR-EGDYSLLDLDSTGGQ 372 (389)
T ss_pred HHHHHhCCC------------------------CCchHHHHHHhcCcEEEeeeeeEEEcCCCCe-eeeEEEEEecCCCce
Confidence 998765321 2247889999999999999999999999998 478999999864 55
Q ss_pred eeEEeEeeCCC
Q 008904 405 PQQIGYWSNYS 415 (549)
Q Consensus 405 ~~~VG~w~~~~ 415 (549)
+..++.++...
T Consensus 373 ~~~~~~~~~~~ 383 (389)
T cd06352 373 LEVVYLYDTSS 383 (389)
T ss_pred EEEEEeccccc
Confidence 58888887654
|
Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l |
| >cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=350.16 Aligned_cols=323 Identities=20% Similarity=0.301 Sum_probs=262.2
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChH-HHHHHHHHHHhcCcEEEEcCCCchH-HH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGF-LSIMGALQFMETDTLAIVGPQSAVM-AH 105 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~-~a~~~~~~l~~~~v~aiiGp~~s~~-~~ 105 (549)
+||+||+..+..|...+.|+++|++++|++++++++.+|++++.|...++. .+..++|++++++|.|||||.+|.. +.
T Consensus 1 ~iG~i~d~~s~~G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~~~d~~f~~~~~~~~~l~~gV~AIiGp~ss~~~~~ 80 (333)
T cd06394 1 RIAAILDDPMECGRGERLALALARERINRAPERLGKARVEVDIFELLRDSQYETTDTMCQILPKGVVSVLGPSSSPASSS 80 (333)
T ss_pred CceeeecCCccccHHHHHHHHHHHHHhccCccccCCceeEEEEeeccccChHHHHHHHHHHHhcCeEEEECCCCchHHHH
Confidence 489999999989999999999999999999999877799999999988664 8888999999999999999999965 67
Q ss_pred HHHHhhhhcCCcEEecccCC-CCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHh
Q 008904 106 VLSHLANELQVPLLSFTALD-PTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLA 184 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~-~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~ 184 (549)
+++++|+..+||+|+++... +.+...+|++ +++.|++..++.|+++++++|+|++|++||+++++ +..|++.++
T Consensus 81 ~v~~i~~~~~VP~Is~~~~~~~~~~~~~~~~-i~l~P~~~~~~~Ai~dli~~~~W~~v~~iYe~d~~----l~~L~~~l~ 155 (333)
T cd06394 81 IVSHICGEKEIPHFKVGPEETPKLQYLRFAS-VNLHPSNEDISVAVAGILNSFNYPTASLICAKAEC----LLRLEELLR 155 (333)
T ss_pred HHHHHhhccCCceEEeccccCcccccccceE-EEecCCHHHHHHHHHHHHHhcCCCEEEEEEeCcHH----HHHHHHHHH
Confidence 99999999999999986432 2222233333 89999999999999999999999999999998874 566666666
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCC
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKS 264 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~ 264 (549)
.... ....++........+++.+|++|+++++++||++|+.+.+..++++|+++||+.+.|+|++++......+.
T Consensus 156 ~~~~---~~~~i~~~~~~~~~d~~~~L~~ik~~~~~~iVv~~~~~~a~~il~qa~~lGm~~~~y~~i~T~l~~~~~~L-- 230 (333)
T cd06394 156 QFLI---SKETLSVRMLDDSRDPTPLLKEIRDDKTATIIIDANASMSHTILLKASELGMTSAFYKYILTTMDFPLLRL-- 230 (333)
T ss_pred hhcc---cCCceeeEEccCcccHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHHHcCCCCCceEEEEecCCcccccH--
Confidence 5432 11112211112356899999999999999999999999999999999999999999999999887654443
Q ss_pred cCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC--C----CCCchhhhHhHHHHHHHHHHHHHHhcCCCcccc
Q 008904 265 PLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS--I----GLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (549)
Q Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~----~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 338 (549)
.+......++++|+..+++.+..++|.+.|++.+.+. . .....++++||||+++
T Consensus 231 ---~~~~~~~~niTgF~l~d~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~al~~D~v~~~----------------- 290 (333)
T cd06394 231 ---DSIVDDRSNILGFSMFNQSHAFYQEFIRSLNQSWRENCDHSPYTGPALSSALLFDAVYAV----------------- 290 (333)
T ss_pred ---HHhhcCCcceEEEEeecCCcHHHHHHHHHHHHhhhhhcccccCCCcccceeeecceEEEE-----------------
Confidence 2333446678999999999999999999888755211 1 1123455555555442
Q ss_pred CCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCCCCc
Q 008904 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLS 418 (549)
Q Consensus 339 ~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~l~ 418 (549)
|+||+|.||++|+|++..++|+++..+|. ++||.|++..||+
T Consensus 291 -------------------------------------glTg~i~f~~~g~R~~~~l~v~~l~~~g~-~kig~W~~~~gl~ 332 (333)
T cd06394 291 -------------------------------------GLTGRIEFNSKGQRSNYTLKILQKTRSGF-RQIGQWHSNETLS 332 (333)
T ss_pred -------------------------------------eeecceecCCCCcCcccEEEEEEecCCcc-eEEEEEeCCCCcC
Confidence 89999999999999999999999998898 9999999998874
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act |
| >cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=352.05 Aligned_cols=343 Identities=19% Similarity=0.278 Sum_probs=277.0
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 104 (549)
+||++.|++ +..|...+.|+++|+++||+++++++|++|++++.|++|++..++..+..+ .++|.+||||.||..+
T Consensus 1 ~ig~~~p~sg~~~~~g~~~~~a~~lAie~iN~~g~il~g~~l~~~~~d~~~~~~~a~~~~~~~-~~~V~aviGp~~S~~~ 79 (382)
T cd06371 1 KVGVLGPWSCDPIFSKALPDVAARLAVSRINRDPSLSLGYWFDYVLLPEPCETSRALAAFLGY-EGYASAFVGPVNPGYC 79 (382)
T ss_pred CceEecCcccCchhhhhhHHHHHHHHHHHHhCCCCCCCCceEEEEEecCCCChhHHHHHHHcc-cCCceEEECCCCchHH
Confidence 589999986 344667889999999999999999889999999999999887666443332 4699999999999999
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
.+++++++.++||+|+++++++.+++ ..||+|+|+.|++ +.++++++++|+|++|++|+++++++....+.+.+.+
T Consensus 80 ~a~a~va~~~~iP~Is~~a~~~~lt~~~~y~~f~r~~~~~---~~~~~~~~~~~~w~~vaii~~~~~~~~~~~~~l~~~l 156 (382)
T cd06371 80 EAAALLAKEWDKALFSWGCVNYELDDVRSYPTFARTLPSP---SRVLFTVLRYFRWAHVAIVSSPQDIWVETAQKLASAL 156 (382)
T ss_pred HHHHHHHHhcCceEEecccCchhhcCcccCCCceecCCCc---HHHHHHHHHHCCCeEEEEEEecccchHHHHHHHHHHH
Confidence 99999999999999999999999987 5799999999876 4678899999999999999999999988999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC-CeEEEEEcch-----HHHHHHHHHHHHcCCCCCCeEEEEeCCcc
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYS-----RTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~~-----~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (549)
++.|++|+....++.. ..++..+|++||+.+ +|+||+++.. .....++++|+++||+..+|+||.++...
T Consensus 157 ~~~gi~v~~~~~~~~~----~~d~~~~L~~lk~~~~~~viv~~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y~~i~~d~~~ 232 (382)
T cd06371 157 RAHGLPVGLVTSMGPD----EKGAREALKKVRSADRVRVVIMCMHSVLIGGEEQRLLLETALEMGMTDGRYVFIPYDTLL 232 (382)
T ss_pred HHCCCcEEEEEEecCC----HHHHHHHHHHHhcCCCcEEEEEEeeccccCcHHHHHHHHHHHHcCCcCCcEEEEEecccc
Confidence 9999999987777644 679999999999987 6999987765 67789999999999999999999988432
Q ss_pred ccc-----CCCC-cCChhhHhhccceEEEeEecCCChhHHHHHHHHHhh-cC---CCCCCCchhhhHhHHHHHHHHHHHH
Q 008904 258 TFI-----DSKS-PLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL-SN---GSIGLNPYGLYAYDTVWMIARALKL 327 (549)
Q Consensus 258 ~~~-----~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-~~---~~~~~~~~~~~~yDav~~~a~Al~~ 327 (549)
... .... ..+.....+..+++.+....+..+..+.|.+.|+.. ++ .......+++++|||++++|+|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~~a~Al~~ 312 (382)
T cd06371 233 YSLPYRNVSYPALRNNSKLRRAYDAVLTITMDSGEQSFYEAFRAAQERGEIPSDLEPEQVSPLFGTIYNSIYLLAHAVEN 312 (382)
T ss_pred ccCCCCCccccCCCCCHHHHHHhHhhEEEEecCCCCcHHHHHHHHHhcCCCCCCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 110 0000 012334457788877766544445556666655321 11 1112345566789999999999999
Q ss_pred HHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCce
Q 008904 328 FLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGY 404 (549)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~ 404 (549)
+++.+.. .++.++.++|++++|+|++|+|.||++|++ ...|.|+++++.+.
T Consensus 313 a~~~g~~-------------------------~d~~~l~~~l~~~~f~GvtG~v~fd~~g~~-~~~~~v~~~~~~~~ 363 (382)
T cd06371 313 ARAAGGG-------------------------VSGANLAQHTRNLEFQGFNQRLRTDSGGGG-QAPYVVLDTDGKGD 363 (382)
T ss_pred HHHhCCC-------------------------ccHHHHHHHHhCccccccceEEEecCCCCc-ccceEEEecCCCCC
Confidence 8765322 148899999999999999999999999997 69999999998665
|
This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge |
| >cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=349.55 Aligned_cols=357 Identities=15% Similarity=0.217 Sum_probs=280.4
Q ss_pred EEEEEeccCCC---Cc-hHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCCh----HHHHHHHHHH-HhcCcEEEEcC
Q 008904 28 NVGAIFSFGTV---NG-QVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNG----FLSIMGALQF-METDTLAIVGP 98 (549)
Q Consensus 28 ~IG~l~~~~~~---~g-~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~----~~a~~~~~~l-~~~~v~aiiGp 98 (549)
+||+++|.+.. .+ .....|+++|+|+||+++++++|++|++.++|+++++ ..+...+..+ +.+++.+||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~lAieeiN~~g~il~g~~l~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp 80 (399)
T cd06384 1 TLAVVLPDNNLKYAWAWPRVGPAIRMAVERIQNKGKLLRGYTITLLNKSSELNGGCSESLAPLHAVDLKLYSDPDVFFGP 80 (399)
T ss_pred CeEEECCCCCCCCeeehhhhHHHHHHHHHHHhccCCcCCCceEEEEEeccCCccccchhhhHHHHHHHHhhcCCCEEECC
Confidence 47888886522 11 3457899999999999999888999999999986553 3333223222 34688999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCC--CCCCceEEccCCcHHHHHHHHHHHHHcCCc-EEEEEEecCCccc--
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAEMVSYFGWG-EVIAIFNDDDQGR-- 173 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~-~v~ii~~~~~~g~-- 173 (549)
.||..+.+++++++.++||+|+++++++.+++ ..||++||+.|++..++.++..++++|+|+ ++++||.++..+.
T Consensus 81 ~~S~~~~av~~i~~~~~iP~Is~~at~~~ls~~~~~y~~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaiiy~~~~~~~~~ 160 (399)
T cd06384 81 GCVYPTASVARFATHWRLPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWTSRAALLYLDLKTDDRP 160 (399)
T ss_pred CCchHHHHHHHHHhhcCCcEEeeccchhhhccccccCCceEEecCcHHHHHHHHHHHHHhCCCcEEEEEEEecCCccCCc
Confidence 99999999999999999999999999888886 378999999999999999999999999999 6889986542221
Q ss_pred --chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 174 --NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 174 --~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
...+.+.+.+++.|++|+....+.. ...++..+|++++. ++|+|++++....+..++++|+++||..++|+||
T Consensus 161 ~~~~~~~~~~~~~~~gi~v~~~~~~~~----~~~d~~~~l~~ik~-~~~vIi~~~~~~~~~~i~~qa~~~g~~~~~y~~i 235 (399)
T cd06384 161 HYFISEGVFLALQEENANVSAHPYHIE----KNSDIIEIIQFIKQ-NGRIVYICGPLETFLEIMLQAQREGLTPGDYVFF 235 (399)
T ss_pred ceEehHHHHHHHHhcCceEEEEEEecc----chhhHHHHHHHHhh-cccEEEEeCCchHHHHHHHHHHHcCCCCCcEEEE
Confidence 1356677788889999987655443 36789999999996 8999999999999999999999999999999999
Q ss_pred EeCCcccccC------C----CCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhh----cCCCCCC---CchhhhH
Q 008904 252 ATTWLSTFID------S----KSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL----SNGSIGL---NPYGLYA 314 (549)
Q Consensus 252 ~~~~~~~~~~------~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~---~~~~~~~ 314 (549)
..++....+. . .+...+...+++++++.+....+..+.+++|.++|+++ ++....+ +.+++++
T Consensus 236 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~p~~~~~~aa~~ 315 (399)
T cd06384 236 YLDVFGESLRVKSPRESYKQMNHSSWTVLKEAFKSVFVITYREPENPEYKEFQRELHARAKEDFGVELEPSLMNFIAGCF 315 (399)
T ss_pred EehhcccccccCCCCccccCCCCcccHHHHHHHhheEEeecCCCCCchHHHHHHHHHHHHhhhcCCCcCcchHhhhhhhh
Confidence 8875442211 0 00001344567888988888887778899999999874 4432223 5668899
Q ss_pred hHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCce
Q 008904 315 YDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSY 394 (549)
Q Consensus 315 yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~ 394 (549)
||||+++|.|++++++.++ .|.++..|.++|++++|+|++|++.||++|+| ...|
T Consensus 316 YDav~l~a~Al~~~~~~~~------------------------~~~~g~~i~~~l~~~~f~GvtG~v~fd~~G~r-~~~~ 370 (399)
T cd06384 316 YDGVMLYAMALNETLAEGG------------------------SQKDGLNITRKMQDRRFWGVTGLVSIDKNNDR-DIDF 370 (399)
T ss_pred HHHHHHHHHHHHHHHhcCC------------------------CCCCcHhHHHHHhCceeecceeEEEECCCCCc-ccce
Confidence 9999999999999865432 24358899999999999999999999999998 4677
Q ss_pred EEEEE---eeCceeeEEeEeeCCC
Q 008904 395 DIINV---IEHGYPQQIGYWSNYS 415 (549)
Q Consensus 395 ~I~~~---~~~~~~~~VG~w~~~~ 415 (549)
.++.+ +++. ++.||.|+..+
T Consensus 371 ~~~~~~~~~~g~-~~~v~~~~~~~ 393 (399)
T cd06384 371 DLWAMTDHETGK-YEVVAHYNGIT 393 (399)
T ss_pred EEEEeecCCCCe-EEEEEEEcCCC
Confidence 77444 4444 59999998754
|
Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux. |
| >cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=347.55 Aligned_cols=316 Identities=22% Similarity=0.350 Sum_probs=266.9
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
+||++|++ ..|...++|+++|+++||+++++++|++|++.+.|++ +++..+++.+|++++++|.+||||.+|..+.+
T Consensus 1 ~iG~i~~~--~~g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~~~~~~li~~~V~aiiG~~~S~~~~a 78 (327)
T cd06382 1 RIGAIFDD--DDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCDLLQQGVAAIFGPSSSEASSI 78 (327)
T ss_pred CeEEEecC--CCchHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHHHHhhhhhhcCcEEEECCCChhHHHH
Confidence 59999997 4578899999999999999999999999999999998 89999999999999889999999999999999
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhc
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI 186 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~ 186 (549)
++++++.+++|+|+++++++.++ .++++||+.|++..++.++++++++++|++|+++|++++++ ..+.+.+++.
T Consensus 79 v~~~~~~~~vP~Is~~~~~~~~~--~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vavl~~~~~~~----~~l~~~~~~~ 152 (327)
T cd06382 79 VQSICDAKEIPHIQTRWDPEPKS--NRQFTINLYPSNADLSRAYADIVKSFNWKSFTIIYESAEGL----LRLQELLQAF 152 (327)
T ss_pred HHHHHhccCCCceeccCCcCccc--cccceEEeCCCHHHHHHHHHHHHHhcCCcEEEEEecChHHH----HHHHHHHHhh
Confidence 99999999999999887777665 45789999999999999999999999999999999887643 4455556555
Q ss_pred Ce---EEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 187 RC---KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 187 g~---~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
+. .+.. ..+++. . +++.+|.+|+++++++|++++...++..++++|+++||..+.|+|++++......+..
T Consensus 153 ~~~g~~v~~-~~~~~~----~-d~~~~l~~i~~~~~d~vv~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~l~ 226 (327)
T cd06382 153 GISGITITV-RQLDDD----L-DYRPLLKEIKNSGDNRIIIDCSADILIELLKQAQQVGMMSEYYHYIITNLDLHTLDLE 226 (327)
T ss_pred ccCCCeEEE-EEccCC----c-cHHHHHHHHHhcCceEEEEECCHHHHHHHHHHHHHhCccccceEEEEecCCccccchh
Confidence 54 4444 345543 4 8999999999999999999999999999999999999999999999988755443331
Q ss_pred CcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCCccc
Q 008904 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 337 (549)
.......++++++...++.+.+++|.+.|+++++.. ..+..+++.+|||++++
T Consensus 227 -----~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~a~~yDav~~~---------------- 285 (327)
T cd06382 227 -----DYRYSGVNITGFRLVDPDSPEVKEVIRSLELSWDEGCRILPSTGVTTESALMYDAVYLF---------------- 285 (327)
T ss_pred -----hhccCceeEEEEEEecCCchhHHHHHHHHHhhcccccccCCCCCcchhhhhhhceEEEe----------------
Confidence 122234467888888888889999999999988631 12556667777776653
Q ss_pred cCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCCCC
Q 008904 338 SNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGL 417 (549)
Q Consensus 338 ~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~l 417 (549)
|+||+|.||++|+|.+..|+|++++++++ ++||.|++..||
T Consensus 286 --------------------------------------g~tG~v~f~~~g~r~~~~~~~~~~~~~~~-~~vg~w~~~~~~ 326 (327)
T cd06382 286 --------------------------------------GLTGRIEFDSSGQRSNFTLDVIELTESGL-RKVGTWNSSEGL 326 (327)
T ss_pred --------------------------------------ecccceeeCCCCCEeeeEEEEEeccccCc-eEEEEECCCCCc
Confidence 88999999999999999999999997777 999999987764
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri |
| >PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=340.82 Aligned_cols=334 Identities=26% Similarity=0.468 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEec
Q 008904 43 SRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 43 ~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 121 (549)
+..|+++|+++||++++++++++|++.+.|+|+ +........|.+..++|.+||||.|+..+.+++.+++.++||+|++
T Consensus 2 ~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~ 81 (348)
T PF01094_consen 2 VLAAVQLAIDEINNNPDLLPNITLEVQVFDTCSDDSFALQAAICSLNKQGVVAVIGPSCSSSAEAVASLASEWNIPQISP 81 (348)
T ss_dssp HHHHHHHHHHHHHHSSTSSTTSEEEEEEEEETTTTHHHHHHHHHHHHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEEEEeeccCCcccccchhhhccCCCcEEEECCCcccccchhheeecccccceeec
Confidence 578999999999999999999999999999984 4555555556666679999999999999999999999999999999
Q ss_pred ccCCCCCCC-C-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcC-eEEEEEEccCC
Q 008904 122 TALDPTLSP-L-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIR-CKISYKSALPP 198 (549)
Q Consensus 122 ~~~~~~ls~-~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g-~~v~~~~~~~~ 198 (549)
+++++.+++ + .||+++|+.|++..+++++++++++|+|++|++||+++.+|....+.+.+.+++.+ .++......+.
T Consensus 82 ~~~~~~ls~~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (348)
T PF01094_consen 82 GSTSPSLSDRKTRYPTFFRTVPSDSSQARALVDLLKHFGWTRVSVVYSDDDYGNSLADSFQDLLRERGGICVAFISVVIS 161 (348)
T ss_dssp SGGSGGGGSTTTTTTTEEESSB-HHHHHHHHHHHHHHTTSSEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEEEEET
T ss_pred cccccccccchhhccccccccccHHHHHHHHHHhhhcCCCceeeeeccccccccccchhhhhhhcccccceecccccccc
Confidence 999999988 4 79999999999999999999999999999999999999998889999999999865 45544122222
Q ss_pred CCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccc
Q 008904 199 DQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILG 276 (549)
Q Consensus 199 ~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 276 (549)
...+....++.+++ .++++||++++...+..++++|.++||...+|+||.++.+....... .........|
T Consensus 162 ----~~~~~~~~~~~l~~~~~~~rvvil~~~~~~~~~~l~~a~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~ 234 (348)
T PF01094_consen 162 ----SDSDAEELLKKLKEIKSGARVVILCSSPEDARQFLEAAYELGMTSGDYVWILTDLDNSSFWQN---NEDFREAFQG 234 (348)
T ss_dssp ----TTSHHHHHHHHHHHHTTTTSEEEEESBHHHHHHHHHHHHHTTTSSTTSEEEEETTTTTTHTST---HCHHHCCHTT
T ss_pred ----cccchhhhhhhhhhccccceeeeeecccccccccccchhhhhccccceeEEeecccccccccc---cccccccccc
Confidence 23344555555555 89999999999999999999999999999999999999876543111 1355678899
Q ss_pred eEEEeEecCCChhHHHHHHHHHhhc------CCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCc
Q 008904 277 ALTLRQHTPDSKRRRDFVSRWNTLS------NGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGT 350 (549)
Q Consensus 277 ~~~~~~~~~~~~~~~~f~~~~~~~~------~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (549)
+++++...+..+.+++|.+.|+... .....+..+++++||||+++++|++++.++++....
T Consensus 235 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAv~~~a~al~~~~~~~~~~~~------------- 301 (348)
T PF01094_consen 235 VLGFTPPPPSSPEFEDFMKKWKESNNQSSTSGSDQEPSPYAAYAYDAVYLLAHALNRALQDGGPVTN------------- 301 (348)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHTTTHTTTTTTTTSSGCHHHHHHHHHHHHHHHHHHHHHHHHSTTTS-------------
T ss_pred eeeeeeecccccchhhhhcccChhhccCcccccccccceeeeeehhhhHHHHHHHHHHHHhccCCCC-------------
Confidence 9999999888999999999998642 123456788999999999999999999876543210
Q ss_pred cccCCccccCchHHHHHHHHhccccccceeeEEcc-CCCCCCCceEEEEEe
Q 008904 351 LNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQ-DRSLLHPSYDIINVI 400 (549)
Q Consensus 351 ~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~-~g~r~~~~~~I~~~~ 400 (549)
....|.+|..+.++|++++|+|++|++.||+ +|+|.+..|+|+++|
T Consensus 302 ----~~~~~~~g~~l~~~l~~~~f~G~tG~v~f~~~~G~~~~~~~~i~~~~ 348 (348)
T PF01094_consen 302 ----GRNPWQNGSQLLKYLRNVSFEGLTGRVSFDSNDGDRTNYDYDILNMQ 348 (348)
T ss_dssp ----SSGTSTTHHHHHHHHHTEEEEETTEEEEEETTTSBEESEEEEEEEE-
T ss_pred ----CccccccHHHHHHHHhheeeeCCCCCEEEeCCCCCcCCCEEEEEECC
Confidence 1145778999999999999999999999999 999989999999875
|
; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A .... |
| >cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=321.95 Aligned_cols=316 Identities=22% Similarity=0.359 Sum_probs=265.1
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecC-CCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDA-KFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~-~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
+||++|+.++ .....|+++|+++||++++++++.+|++.+.|+ .+++..+++.+|+++.++|.+||||.+|..+.+
T Consensus 1 ~iG~i~~~~~---~~~~~a~~lAv~~iN~~ggil~~~~l~~~~~d~~~~~~~~a~~~a~~li~~~V~aiiG~~~S~~~~a 77 (324)
T cd06368 1 RIGAIFDEDA---RQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACDLLSQGVAAIFGPSSSSSANT 77 (324)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHHHhcccccccCCceeeeEEEEecCCChHHHHHHHHHHHhcCcEEEECCCCHHHHHH
Confidence 5999999986 678899999999999999999778999999997 489999999999999999999999999999999
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhc
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI 186 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~ 186 (549)
++++++.++||+|+++++++.++. ++.+++.|+...++.++++++++++|++|++||+++. +...++.+.+.+++.
T Consensus 78 v~~i~~~~~ip~is~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~-~~~~l~~~~~~~~~~ 153 (324)
T cd06368 78 VQSICDALEIPHITTSWSPNPKPR---QFTINLYPSMRDLSDALLDLIKYFGWRKFVYIYDSDE-GLLRLQELLDALSPK 153 (324)
T ss_pred HHHHHhccCCCcEEecCCcCCCCC---cceEEecCCHHHHHHHHHHHHHhcCCCEEEEEECCcH-hHHHHHHHHHhhccC
Confidence 999999999999999888877652 3445556777789999999999999999999997765 445567777778888
Q ss_pred CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcC
Q 008904 187 RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPL 266 (549)
Q Consensus 187 g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 266 (549)
|++|......+ . .++++.+|.++++.++++||+.+...++..++++++++||..+.|+||+++......+.
T Consensus 154 g~~v~~~~~~~-~----~~d~~~~l~~i~~~~~d~Vi~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~---- 224 (324)
T cd06368 154 GIQVTVRRLDD-D----TDMYRPLLKEIKREKERRIILDCSPERLKEFLEQAVEVGMMSEYYHYILTNLDFHTLDL---- 224 (324)
T ss_pred CceEEEEEecC-C----chHHHHHHHHHhhccCceEEEECCHHHHHHHHHHHHHhccccCCcEEEEccCCccccch----
Confidence 99988765433 2 23899999999999999999999999999999999999998899999998765432221
Q ss_pred ChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCC
Q 008904 267 SLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSND 340 (549)
Q Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 340 (549)
........++.++....+..+..++|.++|++.++.. ..+..+++.+||||+++
T Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~aa~~yDav~~~------------------- 284 (324)
T cd06368 225 -ELFRYGGVNITGFRLVDPDNPEVQKFIQRWERSDHRICPGSGLKPIKTESALTYDAVLLF------------------- 284 (324)
T ss_pred -hhhhcCCceEEEEEEecCCChHHHHHHHHHHhccccccCCCCCCCcchhhHhhhcEEEEe-------------------
Confidence 1222344466777777778889999999999988631 25677788888888764
Q ss_pred ccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCCCC
Q 008904 341 TKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGL 417 (549)
Q Consensus 341 ~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~l 417 (549)
||+++||++|+|.++.++|+++.+++. ++||.|++..|+
T Consensus 285 -------------------------------------tg~~~f~~~g~~~~~~~~i~~~~~~~~-~~~g~W~~~~~~ 323 (324)
T cd06368 285 -------------------------------------TGRIQFDENGQRSNFTLDILELKEGGL-RKVGTWNPEDGL 323 (324)
T ss_pred -------------------------------------eeeeEeCCCCcCcceEEEEEEEcCCCc-eEEEEECCCCCC
Confidence 789999999999999999999998888 999999987653
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors |
| >cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=316.51 Aligned_cols=332 Identities=16% Similarity=0.186 Sum_probs=251.0
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+||+||+.++.. ....-++.+|++++|+++++ .+..+.++.+|+.+|+.+++.++|++++++|.|||||.+|..+.++
T Consensus 1 ~IG~if~~~~~~-~~~af~~ala~~~iN~~gg~-~~~~i~~v~~dd~~d~~~a~~~~c~Li~~gV~AI~G~~~s~~~~av 78 (363)
T cd06381 1 HIGAIFSESALE-DDEVFAVAVIDLNINEQILQ-TEKITLSISFIDLNNHFDAVQEACDLMNQGILALVTSTGCASAIAL 78 (363)
T ss_pred CeeeeccCCcch-HHHHHHHHHHHhhccccccC-CccceeeeEeecCCChHHHHHHHHHHHhcCcEEEEecCChhHHHHH
Confidence 599999987532 23333344444566777765 4677888889999999999999999999999999999999999999
Q ss_pred HHhhhhcCCcEEecccCC---C-----CCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHH
Q 008904 108 SHLANELQVPLLSFTALD---P-----TLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~---~-----~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~ 178 (549)
+++++..+||+|++.+.. + .+.+ ...+|.|++.|++ .+..++++++++|+|++|+++|++++ |...++.
T Consensus 79 ~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~rp~~-~~~~ai~~lv~~~~wkkvavly~~d~-g~~~l~~ 156 (363)
T cd06381 79 QSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLALRPPV-RLNDVMLRLVTEWRWQKFVYFYDNDY-DIRGLQE 156 (363)
T ss_pred HHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEEeccH-HHHHHHHHHHHhCCCeEEEEEEECCc-hHHHHHH
Confidence 999999999999965321 1 1111 1234666677774 68999999999999999999998775 6667788
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH-----h--cCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-----R--MMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-----~--~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.+.+++.|+.+.... ...+ ....+..+++.+ + ..+.++||++|+++.+..++++|.++||+..+|+||
T Consensus 157 ~~~~~~~~g~~v~~~~-~~~~---~~~~~~~l~~~~~~~~l~~~~~~~~~vIl~~~~~~~~~~l~~a~~~gm~~~~~~wi 232 (363)
T cd06381 157 FLDQLSRQGIDVLLQK-VDLN---ISKMATALFTTMRCEELNRYRDTLRRALLLLSPNGAYTFIDASVETNLAIKDSHWF 232 (363)
T ss_pred HHHHHHhcCceEEEEe-cccc---cchhhhhhhhHHHHHHHHhhcccceEEEEEcCcHHHHHHHHHHHHcCCCcCceEEE
Confidence 8888888888666432 2211 122233333333 2 445668899999999999999999999999999999
Q ss_pred EeCCcccc-cCCCCcCChhhHhhccceEEEeEecCCChhHH----HHHHHHHhhcCC----CCCCCchhhhHhHHHHHHH
Q 008904 252 ATTWLSTF-IDSKSPLSLKTAKSILGALTLRQHTPDSKRRR----DFVSRWNTLSNG----SIGLNPYGLYAYDTVWMIA 322 (549)
Q Consensus 252 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~f~~~~~~~~~~----~~~~~~~~~~~yDav~~~a 322 (549)
+++.+... .+. +.......|+++|+...+..+..+ +|.+.|+..... ...+...++++||||+++
T Consensus 233 ~~~~l~~~~~~l-----~~~~~~~~nitgfrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~yDaV~~~- 306 (363)
T cd06381 233 LINEEISDTEID-----ELVRYAHGRMTVIRQTFSKEKTNQRCLRNNHRISSLLCDPKDGYLQMLEISNLYIYDSVLLL- 306 (363)
T ss_pred Eeccccccchhh-----HHHhhcCccEEEEEEecCCcCchHHHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH-
Confidence 87765542 222 345678899999999987766665 566667543321 123456799999999998
Q ss_pred HHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeC
Q 008904 323 RALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH 402 (549)
Q Consensus 323 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~ 402 (549)
.++|++++|+|+||+|.||++|.|.++.++|+++..+
T Consensus 307 -------------------------------------------~~~~~~~~~~GLTG~i~F~~~g~r~~~~l~i~~~~~~ 343 (363)
T cd06381 307 -------------------------------------------LETIKKGPITGLTGKLEFNEGGDNSNVQFEILGTGYS 343 (363)
T ss_pred -------------------------------------------HHHHHhcCccCcceeEEeCCCCCccccEEEEEEeccC
Confidence 1347778899999999999999999999999999844
Q ss_pred c-----eeeEEeEeeCCCCC
Q 008904 403 G-----YPQQIGYWSNYSGL 417 (549)
Q Consensus 403 ~-----~~~~VG~w~~~~~l 417 (549)
+ . +.||.|++..||
T Consensus 344 ~~~~~~~-~~~~~w~~~~~~ 362 (363)
T cd06381 344 ETLGKDG-RWLATWNPSKGL 362 (363)
T ss_pred Cccccce-EEeeeccCCCCC
Confidence 4 5 889999988765
|
This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G |
| >cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=301.81 Aligned_cols=344 Identities=17% Similarity=0.157 Sum_probs=251.7
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC-CChHHHHHHHHHH-HhcCcEEEEcC-
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQF-METDTLAIVGP- 98 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~-~~~~~a~~~~~~l-~~~~v~aiiGp- 98 (549)
..++.|+||++|+.. ...+.||++|++.+|.+..++++.+|++++.... .|++.+.+.+|++ +++||.||+||
T Consensus 14 ~~~~~i~iG~if~~~----~~~~~af~~Av~~~N~~~~l~~~~~L~~~~~~~~~~dsf~~~~~vC~~ll~~GV~AIfg~p 89 (382)
T cd06377 14 RIGHTVRLGALLVRA----PAPRDRVLAALARANRAPLLPYNLSLEVVAAAAPSRDPASLLRSVCQTVVVQGVSALLAFP 89 (382)
T ss_pred hcCCceeeeEEecCC----chHHHHHHHHHHHhccccccccCceeEEeEEEcCCCChHHHHHHHHHhHhhCCeEEEEecC
Confidence 456689999999976 2479999999999999988888899999887654 5999999999999 59999999994
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCC-CCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTL-SPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~l-s~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~ 177 (549)
.++..+..+..+|+.++||+|++...++.. ++..+.+.+++.|+...++.|++++|++|+|++|++||+.+. | ..
T Consensus 90 ~s~~~~~~v~sic~~l~IP~I~~~~~~~~~~~~~~~~l~L~l~P~~~~l~~a~~~ll~~~~W~~f~~iy~~~~-g---l~ 165 (382)
T cd06377 90 QTRPELVQLDFVSAALEIPVVSIVRREFPRGSQNPFHLQMSWASPLSTLLDVLLSVLQRNGWEDVSLVLCRER-D---PT 165 (382)
T ss_pred CCHHHHHHHHHHhcCCCCCEEEecCCcccccCCCceeEEEEecCCHHHHHHHHHHHHHHCCCcEEEEEEecCc-C---HH
Confidence 777888999999999999999985544333 223333445679999999999999999999999999998876 3 33
Q ss_pred HHHHHHhhcC---e-EEEEEEccCCCCCCChhhH-HHHHHHHhcCC-CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 178 ALGDKLAEIR---C-KISYKSALPPDQSVTETDV-RNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 178 ~l~~~~~~~g---~-~v~~~~~~~~~~~~~~~~~-~~~l~~l~~~~-~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.|++.++..+ + .+......+... .+..++ +.+|+++++.. +++|+++|+.+.+..+|+++.+ .|+||
T Consensus 166 ~lq~l~~~~~~~~~~~~i~v~~~~~~~-~d~~~~~~~~L~~i~~~~~~~~ill~cs~e~~~~il~~~~~------~y~wI 238 (382)
T cd06377 166 GLLLLWTNHARFHLGSVLNLSRNDPST-ADLLDFLRAQLELLKDPPGPAVVLFGCDVARARRVLELTPP------GPHWI 238 (382)
T ss_pred HHHHHHHHhcccccCceEEEEeccCcc-CChhHHHHHHHHHhhcccCceEEEEECCHHHHHHHHHhhcc------ceEEE
Confidence 3444444332 1 122222233210 023344 99999999999 9999999999999999988744 49999
Q ss_pred EeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhc
Q 008904 252 ATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQ 331 (549)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 331 (549)
+++.. +... ......-.|+++.. . .......+++||||+++|+|++.+...
T Consensus 239 v~~~~----~le~---~~~~g~nigLl~~~--~--------------------~~~~~l~ali~DAV~lvA~a~~~l~~~ 289 (382)
T cd06377 239 LGDPL----PPEA---LRTEGLPPGLLAHG--E--------------------TTQPPLEAYVQDALELVARAVGSATLV 289 (382)
T ss_pred EcCCc----Chhh---ccCCCCCceEEEEe--e--------------------cccccHHHHHHHHHHHHHHHHHHhhhc
Confidence 98721 1100 00011222333210 0 001123789999999999999986321
Q ss_pred CCCccccCCccccCCCCCccccCCc--c-ccCchHHHHHHHHhccccccceeeEEccCCCC--CCCceEEEEEe--eC--
Q 008904 332 GNTISFSNDTKLNGLGGGTLNLGAL--S-IFDGGKKFLANILQTNMTGLSGPIHFNQDRSL--LHPSYDIINVI--EH-- 402 (549)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~--~-~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r--~~~~~~I~~~~--~~-- 402 (549)
..... ...+..+|... . +|.+|..|.++|++++|+|.||+|.|+ .|.| +++.++|++++ ..
T Consensus 290 ~~~~~---------l~~~~~~C~~~~~~~~W~~G~~l~~~Lknv~~eGlTG~I~F~-~g~R~~~~~~l~I~~L~~~~~G~ 359 (382)
T cd06377 290 QPELA---------LIPATVNCMDLPTKGNESSGQYLARFLANTSFDGRTGPVWVT-GSSQVHSSRHFKVWSLRRDPVGQ 359 (382)
T ss_pred ccccc---------cCCCCCCcccCCCCCCCCchHHHHHHHHhCcccccceeEEEc-cCeeecccceEEEEEeccccCCC
Confidence 11111 12234688754 5 899999999999999999999999994 5778 78999999998 32
Q ss_pred ceeeEEeEeeCCCCCcc
Q 008904 403 GYPQQIGYWSNYSGLSV 419 (549)
Q Consensus 403 ~~~~~VG~w~~~~~l~~ 419 (549)
..|++||+|++...+.|
T Consensus 360 ~~W~kVG~W~~~~~~~~ 376 (382)
T cd06377 360 PTWTTVGSWQGGRKIVM 376 (382)
T ss_pred ccceEEEEecCCCceec
Confidence 35799999998654544
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in |
| >PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=312.07 Aligned_cols=340 Identities=12% Similarity=0.154 Sum_probs=286.9
Q ss_pred CCCCceEEEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 008904 21 ALKPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG 97 (549)
Q Consensus 21 ~~~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG 97 (549)
....++|+||++.|++. ..|.....++++|+++||+.+|+. |++|++++.|++++|..+.+.+.++++++|.+|||
T Consensus 20 ~~~~~~I~IG~l~plSG~~a~~G~~~~~g~~~av~~iNa~GGi~-G~~ielv~~D~~~~p~~a~~~~~~Li~~~V~~iiG 98 (369)
T PRK15404 20 AALADDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIK-GDKLEGVEYDDACDPKQAVAVANKVVNDGIKYVIG 98 (369)
T ss_pred cccCCceEEEEeecCCCcchhcCHhHHHHHHHHHHHHHhcCCCC-CeEEEEEeecCCCCHHHHHHHHHHHHhCCceEEEc
Confidence 45667999999999984 457888999999999999999985 89999999999999999999999999989999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH-HHcCCcEEEEEEecCCcccchH
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l-~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
+.+|..+.+++++++..++|+|++.++++.+++..++|+||+.|.+..++.++++++ ++++|+++++|++++.||+...
T Consensus 99 ~~~s~~~~a~~~~~~~~~ip~i~~~s~~~~l~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~k~va~i~~d~~~g~~~~ 178 (369)
T PRK15404 99 HLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLIFRTIGLDSDQGPTAAKYILEKVKPKRIAVLHDKQQYGEGLA 178 (369)
T ss_pred CCCchhHHHhHHHHHHCCCeEEecCCCCHHHhcCCCceEEeCCCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCchhHHHH
Confidence 999999999999999999999999888888877668999999999999999999976 4569999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+.+.+++.|++++....++.. ..|+..++.++++.++++|++.....+...++++++++|+.. .|+.+.+.
T Consensus 179 ~~~~~~~~~~G~~v~~~~~~~~g----~~D~~~~v~~l~~~~~d~v~~~~~~~~~~~~~k~~~~~G~~~---~~i~~~~~ 251 (369)
T PRK15404 179 RSVKDGLKKAGANVVFFEGITAG----DKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQAREAGLKT---QFMGPEGV 251 (369)
T ss_pred HHHHHHHHHcCCEEEEEEeeCCC----CCchHHHHHHHHhcCCCEEEECCCchHHHHHHHHHHHCCCCC---eEEecCcC
Confidence 99999999999999988778754 678999999999999999998877788899999999999753 46766543
Q ss_pred ccccCCCCcCChhhHhhccceEEEeEe-cCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCc
Q 008904 257 STFIDSKSPLSLKTAKSILGALTLRQH-TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~ 335 (549)
.... .. ........|++...+. ....+..++|.+.|+++++ ..+..++...||++++++.|++++..
T Consensus 252 ~~~~-~~----~~~~~~~~Gv~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~Y~~~~~l~~Al~~aG~----- 319 (369)
T PRK15404 252 GNKS-LS----NIAGPASEGMLVTLPKRYDQDPANKAIVDAFKAKKQ--DPSGPFVWTTYAAVQSLAAGINRAGS----- 319 (369)
T ss_pred CCHH-HH----HhhhhhhcCcEEEccCCCccChhHHHHHHHHHHhcC--CCCccchHHHHHHHHHHHHHHHhhCC-----
Confidence 2210 00 1122456777765442 2345678899999998764 34455678899999999999998521
Q ss_pred cccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCce
Q 008904 336 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGY 404 (549)
Q Consensus 336 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~ 404 (549)
. ++..|.++|++.+|+|++|++.|+++|++....|.|++|++++.
T Consensus 320 -----------------------~-~~~~l~~al~~~~~~~~~G~~~~~~~g~~~~~~~~i~~~~~~~~ 364 (369)
T PRK15404 320 -----------------------D-DPAKVAKYLKANTFDTVIGPLSWDEKGDLKGFEFGVFEWHADGT 364 (369)
T ss_pred -----------------------C-CHHHHHHHHHhCCCCcceEeeEECCCCCcccCCEEEEEEEcCCe
Confidence 0 37889999999999999999999999988788999999987765
|
|
| >cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=308.50 Aligned_cols=328 Identities=17% Similarity=0.201 Sum_probs=280.6
Q ss_pred EEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHH
Q 008904 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 104 (549)
+||++.|++. ..|.....++++|++++|+++++ +|++|++++.|+++++..+.+.+.++++++|.+|+||.++..+
T Consensus 1 ~iG~~~p~sG~~~~~g~~~~~g~~~a~~~iN~~ggi-~g~~i~~~~~D~~~~~~~~~~~~~~li~~~v~aiiG~~~s~~~ 79 (334)
T cd06342 1 KIGVAGPLTGPNAALGKDIKNGAQLAVEDINAKGGG-KGVKLELVVEDDQADPKQAVAVAQKLVDDGVVGVVGHLNSGVT 79 (334)
T ss_pred CeeEeccCCCcchhhcHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCChHHHHHHHHHHHhCCceEEECCCccHhH
Confidence 5999999984 45778899999999999999887 5999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH-HHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l-~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
.+++++++..+||+|++++.++.+.+..|+++||+.|++..++.++++++ ++++|++|++++.++++|....+.+.+.+
T Consensus 80 ~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~ 159 (334)
T cd06342 80 IPASPIYADAGIVMISPAATNPKLTERGYKNVFRVVARDDQQGPAAAKYAVETLKAKKVAIIDDKTAYGQGLADEFKKAL 159 (334)
T ss_pred HHhHHHHHhCCCeEEecCCCCchhhcCCCceEEeccCCcHHHHHHHHHHHHHhcCCCEEEEEeCCcchhhHHHHHHHHHH
Confidence 99999999999999998877666665668999999999999999999986 56899999999999999999999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
++.|++|.....++.. ..++...+.++++.++++|++.+...+...+++++++.|+. ..|+..+.+......
T Consensus 160 ~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~- 231 (334)
T cd06342 160 KAAGGKVVAREGTTDG----ATDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQMRQLGLK---APFMGGDGLCDPEFI- 231 (334)
T ss_pred HHcCCEEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEcCcchhHHHHHHHHHHcCCC---CcEEecCccCCHHHH-
Confidence 9999999998877754 67899999999999999999999999999999999999974 356666543211000
Q ss_pred CcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCc
Q 008904 264 SPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDT 341 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~ 341 (549)
........|++......+ ..+..++|.++|.++++ ..++.++...||+++++++|++++. .
T Consensus 232 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~yda~~~~~~al~~~~----~------- 294 (334)
T cd06342 232 ----KIAGDAAEGTYATFPGGPLEKMPAGKAFVARYKAKFG--DPPGAYAPYAYDAANVLAEAIKKAG----S------- 294 (334)
T ss_pred ----HHhhHhhCCcEEEecCCCCCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHHHHHHHHhC----C-------
Confidence 112245677777665544 36788999999998886 3457788999999999999999861 0
Q ss_pred cccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEE
Q 008904 342 KLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINV 399 (549)
Q Consensus 342 ~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~ 399 (549)
. ++..+.++|++.+|+|++|+++|+++|++.+..|+|+||
T Consensus 295 -----------------~-~~~~v~~~l~~~~~~g~~g~i~f~~~g~~~~~~~~~~~~ 334 (334)
T cd06342 295 -----------------T-DPAKVADALRKVDFDGVTGKISFDAKGDLKGAAVTVYQV 334 (334)
T ss_pred -----------------C-CHHHHHHHHHhCCCCCcceeeEECCCCCcccCcEEEEeC
Confidence 1 378999999999999999999999999999999999875
|
This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few. |
| >cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=316.03 Aligned_cols=327 Identities=16% Similarity=0.155 Sum_probs=244.2
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecC------C-CChHHHHHHHHHHHhcCc--EEEEcCCCchHHHHH
Q 008904 37 TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDA------K-FNGFLSIMGALQFMETDT--LAIVGPQSAVMAHVL 107 (549)
Q Consensus 37 ~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~------~-~~~~~a~~~~~~l~~~~v--~aiiGp~~s~~~~~v 107 (549)
...|...+.|+++|++++|++. +.+|...+.+. . .+...+.+++|+++++++ .|||||.++..+..+
T Consensus 8 ~~~~~~~~~A~~~Av~~~N~~~----~~~l~~~~~~~~~~~~~~~~d~~~~~~~~C~~~~~gv~~~AIiGp~ss~~a~~V 83 (368)
T cd06383 8 EDDNDVYKQIIDDALSYINRNI----GTGLSVVHQQVETNAEVNRNDVKVALIEVCDKADSAIVPHLVLDTTTCGDASEI 83 (368)
T ss_pred ccchHHHHHHHHHHHHHHhcCC----CCceEEEEecccccccccCCcHHHHHHHHHHHHHccCCcEEEECCCcchhHHHH
Confidence 3467889999999999999985 56777777666 4 467788888999999988 899999999999999
Q ss_pred HHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHH-HHhhc
Q 008904 108 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD-KLAEI 186 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~-~~~~~ 186 (549)
+++|+.++||+|+++.. ..++.+|||++|+.|++..+.+|+++++++|+|++|++||+++.........+.. .....
T Consensus 84 ~si~~~~~IP~Is~s~~--~~~~~~~p~~ir~~Ps~~~~~~Ai~dlI~~f~W~~v~iIYddd~gl~~~l~~~l~~~~~~~ 161 (368)
T cd06383 84 KSVTGALGIPTFSASYG--QEGDLEQPYLIQLMPPADDIVEAIRDIVSYYNITNAAILYDDDFVMDHKYKSLLQNWPTRH 161 (368)
T ss_pred HHHHhccCCCEEEccCC--CcCcccCceEEEEeCChHHHHHHHHHHHHHCCCcEEEEEEEcCchhhHHHHHHHHhHHhcC
Confidence 99999999999997443 2333578999999999999999999999999999999999776533223333333 23334
Q ss_pred CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCc
Q 008904 187 RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSP 265 (549)
Q Consensus 187 g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~ 265 (549)
++++. +.. ..+++..+++|++++.+.||+.|. ++.+..+|++|.++||++.+|+||++++.....+.
T Consensus 162 ~~~v~-----~~~----~~~~~~~Lk~lk~~~~~rIIi~~s~~~~~~~il~qA~~lgm~~~~y~wilt~ld~~~~dl--- 229 (368)
T cd06383 162 VITII-----NSI----IDEVREQIKRLRNLDIKNIFILGSTEEIIRYVLDQALAEGFMGRKYAWFLGNPDLGIYDD--- 229 (368)
T ss_pred CEEEE-----ecc----chhHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHcCCcCCceEEEEcCCCchhhhh---
Confidence 45543 111 346889999999988866666666 59999999999999999999999999987655443
Q ss_pred CChhhHhhccceEEEeEecCCChhHHHHHHHHHhhc--C-CCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCcc
Q 008904 266 LSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLS--N-GSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTK 342 (549)
Q Consensus 266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~--~-~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~ 342 (549)
+.......++.++++........+.+.+.|.... + ........++++||||++++.|++++........+.
T Consensus 230 --~~~~~~~~Nitgfrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~Dav~~~~~a~~~l~~~~~~~~~~---- 303 (368)
T cd06383 230 --LSCQLRNASIFVTRPMMDYQSSVRGALLRTDEPTLRPVFYFEWAFRLFLAYDAVLAVGEWPRRMRKKRVEDGST---- 303 (368)
T ss_pred --hhhccccCcEEEeeccccchhhhccceeeccCCccCchhHHHHHHHHHHHHHHHHHhccccchhheeeccCCCc----
Confidence 2334456789999997666655577777663211 0 001233568999999999999999863211111100
Q ss_pred ccCCCCCccccCCc---ccc-CchHHHHHHHHhccccccceeeEEccCCCCCC
Q 008904 343 LNGLGGGTLNLGAL---SIF-DGGKKFLANILQTNMTGLSGPIHFNQDRSLLH 391 (549)
Q Consensus 343 ~~~~~~~~~~c~~~---~~~-~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~ 391 (549)
+.....|... .+| .+|..+.++|+.++|+|+||+|.||++|.|.+
T Consensus 304 ----~~~~~~~~g~~~~~~w~~~g~~~~~~~k~~~~~gltG~i~f~~~g~R~~ 352 (368)
T cd06383 304 ----GTSVLPGFGISPESPLMTLQSSPFNGSSEIKFEMLAGRVAIDEGSSVST 352 (368)
T ss_pred ----CccccCCCCCCcccchhhcccccccCccceeEeeecCeEEEecCceeee
Confidence 1122345443 256 66779999999999999999999999998853
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current. |
| >cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=308.22 Aligned_cols=304 Identities=15% Similarity=0.227 Sum_probs=236.7
Q ss_pred CCChHHHHHHHHHHHhc-CcEEEE-cCCCch--HHHHHHHhhhhcCCcEEecccCCC-CCCC-CCCCceEEccCCcHHHH
Q 008904 74 KFNGFLSIMGALQFMET-DTLAIV-GPQSAV--MAHVLSHLANELQVPLLSFTALDP-TLSP-LQYPFFVQTAPNDLYLM 147 (549)
Q Consensus 74 ~~~~~~a~~~~~~l~~~-~v~aii-Gp~~s~--~~~~va~~~~~~~iP~Is~~~~~~-~ls~-~~~~~~~r~~ps~~~~~ 147 (549)
..||...+.++|+++.+ +|.|+| ||.++. .+..++.+++.++||+|++++.++ .+++ ..+|||+|+.|++..|+
T Consensus 44 ~~d~~~~~~~vC~ll~~~~V~aiIfgp~~~~~~~a~~~s~~~~~~~vP~is~~~~s~~~ls~~~~~p~flr~~Psd~~q~ 123 (362)
T cd06378 44 ETDPKSILTQLCDLLSTTKVHGVVFEDDTDQEAVAQILDFISAQTFLPILGIHGGSSMIMAAKDSGSTFLQFGPSIEQQA 123 (362)
T ss_pred CCCHHHHHHHHHHHhcccceEEEEecCCCCccccchhhhhhhhceeccEEEecccccccccCCCCCceEEEeCCCHHHHH
Confidence 46899999999999977 699766 999987 445677777789999999976654 5566 57999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.|+++++++|+|++|++||++++.+....+.+++.+...++|+.....++... .........++++++.++++||++|+
T Consensus 124 ~Ai~~Ii~~f~W~~v~iV~~~~~g~~~~~~~l~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~l~~lk~~~arViVl~~s 202 (362)
T cd06378 124 AVMLKIMEEYDWHAFSVVTSRFPGYDDFVSAVRTTVDNSFVGWELQSVLTLDM-SDDDGDARTQRQLKKLESQVILLYCS 202 (362)
T ss_pred HHHHHHHHHCCCeEEEEEEEcCCCHHHHHHHHHHHHhhcccceeEEEEEeecc-CCCcchHHHHHHHHhcCCCEEEEECC
Confidence 99999999999999999999888777777788877776666654443333221 12234678889999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCC
Q 008904 228 SRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGL 307 (549)
Q Consensus 228 ~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 307 (549)
.+.+..++++|.++||++.+|+||++++.....+.. ......|++++.. ++|+.
T Consensus 203 ~~~a~~if~~A~~~gm~g~~yvWI~t~~~~~~~~~~------~~~~~~G~i~v~~------------~~w~~-------- 256 (362)
T cd06378 203 KEEAEYIFRAARSAGLTGPGYVWIVPSLVLGNTDLG------PSEFPVGLISVSY------------DGWRY-------- 256 (362)
T ss_pred HHHHHHHHHHHHHcCCcCCCeEEEecccccCCCccc------cccCCcceEeecc------------ccccc--------
Confidence 999999999999999999999999999766542210 1133466666542 22321
Q ss_pred CchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCC-cc-ccCchHHHHHHHHhccccccceeeEEcc
Q 008904 308 NPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGA-LS-IFDGGKKFLANILQTNMTGLSGPIHFNQ 385 (549)
Q Consensus 308 ~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-~~-~~~~~~~l~~~l~~~~f~g~tG~v~fd~ 385 (549)
...+.+||||+++|+|++.+++.....+ ..+.+|.. .. +|.+|..|+++|++++|+|. +|+|++
T Consensus 257 -~~~a~~~DaV~vva~Al~~l~~~~~~~~-----------~~~~~C~~~~~~~~~~G~~l~~~l~~v~~~G~--~i~F~~ 322 (362)
T cd06378 257 -SLRARVRDGVAIIATGASAMLRQHGFIP-----------EAKGSCYGQAEKRDLPPNTLHRYMMNVTWEGR--DLSFTE 322 (362)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhccCCCC-----------CCCCCcCCCCCCCCCchHHHHHHhhcceECCC--ceeECC
Confidence 1256789999999999999875433221 22346754 22 48889999999999999996 999999
Q ss_pred CCCCCCCceEEEEEeeC-ceeeEEeEeeCCCCCccc
Q 008904 386 DRSLLHPSYDIINVIEH-GYPQQIGYWSNYSGLSVV 420 (549)
Q Consensus 386 ~g~r~~~~~~I~~~~~~-~~~~~VG~w~~~~~l~~~ 420 (549)
+|+|.++.|+|++++++ ++ ++||.|+++ +|.|.
T Consensus 323 ~G~r~~~~ldIinl~~~~g~-~kVG~W~~~-~L~~~ 356 (362)
T cd06378 323 DGYLVNPKLVVISLNKERVW-EEVGKWENG-SLRLK 356 (362)
T ss_pred CCeEccceEEEEEecCCCCc-eEEEEEcCC-eEEEe
Confidence 99999999999999964 66 999999854 56553
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in |
| >cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=310.77 Aligned_cols=309 Identities=31% Similarity=0.498 Sum_probs=260.0
Q ss_pred EEEEEeccCCC-------------CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc----
Q 008904 28 NVGAIFSFGTV-------------NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET---- 90 (549)
Q Consensus 28 ~IG~l~~~~~~-------------~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~---- 90 (549)
.||++||++.. .|.....++.+|+++||+++++++|++|++++.|+|+++..+++.+++++.+
T Consensus 1 ~ig~lf~~~~~~~~~~~~c~~~~~~~~~~~~~~~~Av~~iN~~~~~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~~ 80 (348)
T cd06350 1 IIGGLFPLHSGSESVSLKCGRFGKKGLQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSCCSPAVALRAALDLLLSGEGT 80 (348)
T ss_pred CeEEEEeCcccccCCCcccceechHHHHHHHHHHHHHHHHcCCCccCCCCceeEEEEecCCcchHHHHHHHHHHhcCCCC
Confidence 48999999852 2455678999999999999999999999999999999999999999999975
Q ss_pred ----------CcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCC
Q 008904 91 ----------DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGW 159 (549)
Q Consensus 91 ----------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W 159 (549)
+|.+||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++++|
T Consensus 81 ~~~~~~~~~~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~~ 160 (348)
T cd06350 81 TPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQISYGATSPLLSDKLQFPSFFRTVPSDTSQALAIVALLKHFGW 160 (348)
T ss_pred CCCCcCCCCCceEEEECCCccHHHHHHHHHHhcCcCceecccCCChhhccccccCCeeEecCCcHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999988876 57899999999999999999999999999
Q ss_pred cEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHH
Q 008904 160 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239 (549)
Q Consensus 160 ~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~ 239 (549)
++|++|+.+++||....+.+.+.+++.|++|+....++.. ....++..++++++++++++|++++...++..++++++
T Consensus 161 ~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~~~a~ 238 (348)
T cd06350 161 TWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPS--STEEDIKRILKKLKSSTARVIVVFGDEDDALRLFCEAY 238 (348)
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCC--CcHHHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888754 23678999999999999999999999999999999999
Q ss_pred HcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHH
Q 008904 240 RLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVW 319 (549)
Q Consensus 240 ~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~ 319 (549)
++|+ ... .|++.+.+....... ........|++++..+.+.....+.|.+.|++ +++.+||||+
T Consensus 239 ~~g~-~~~-~~i~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~----------~~~~~YDav~ 302 (348)
T cd06350 239 KLGM-TGK-YWIISTDWDTSTCLL----LFTLDAFQGVLGFSGHAPRSGEIPGFKDFLRK----------YAYNVYDAVY 302 (348)
T ss_pred HhCC-CCe-EEEEEccccCccccc----cCCcceeeeEEEEEEEeecCCcCCChHHHHHH----------HHHHHHhhee
Confidence 9998 344 455554443321110 12235678888888777655445556666654 4677888876
Q ss_pred HHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEE
Q 008904 320 MIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINV 399 (549)
Q Consensus 320 ~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~ 399 (549)
+ .+.|+++|+| ...|+|.++
T Consensus 303 ~-----------------------------------------------------------~v~f~~~gd~-~~~~~i~~~ 322 (348)
T cd06350 303 A-----------------------------------------------------------EVKFDENGDR-LASYDIINW 322 (348)
T ss_pred E-----------------------------------------------------------EEEecCCCCc-ccceeEEEE
Confidence 6 5789999997 577999998
Q ss_pred ee---CceeeEEeEeeCC
Q 008904 400 IE---HGYPQQIGYWSNY 414 (549)
Q Consensus 400 ~~---~~~~~~VG~w~~~ 414 (549)
+. ...+++||.|++.
T Consensus 323 ~~~~~~~~~~~vg~~~~~ 340 (348)
T cd06350 323 QIFPGGGGFVKVGFWDPQ 340 (348)
T ss_pred EEcCCcEEEEEEEEEcCC
Confidence 75 3555999999873
|
Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr |
| >cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=298.58 Aligned_cols=321 Identities=17% Similarity=0.231 Sum_probs=268.5
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++ +..|.....++++|++++|+++++ +|+++++++.|+++++..+++.+++++.+ +|.+||||.+|..
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~ggi-~g~~v~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 79 (344)
T cd06345 1 KIGVLAPLSGGASTTGEAMWNGAELAAEEINAAGGI-LGRKVELVFEDTEGSPEDAVRAFERLVSQDKVDAVVGGYSSEV 79 (344)
T ss_pred CeeEEEecCCcccccCHHHHHHHHHHHHHHHHcCCC-CCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEECCcchHH
Confidence 589999998 456889999999999999999988 58999999999999999999999999987 9999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCC----CCCCceEEccCCcHHHHHHHHHHHHH-----cCCcEEEEEEecCCcccc
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSP----LQYPFFVQTAPNDLYLMSAIAEMVSY-----FGWGEVIAIFNDDDQGRN 174 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~----~~~~~~~r~~ps~~~~~~ai~~~l~~-----~~W~~v~ii~~~~~~g~~ 174 (549)
+.+++++++.+++|+|+++++++.+++ ..++++||+.|++..+..++++++.+ ++|++|++++.++.||..
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~~~~~t~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~~~~g~~ 159 (344)
T cd06345 80 VLALQDVAAENKVPFIVTGAASPEITTADDYETYKYVFRAGPTNSSYAQSVADALKETLVDKHGFKTAAIVAEDAAWGKG 159 (344)
T ss_pred HHHHHHHHHHcCCcEEeccCCCCcccccccccCCceEEecCCCcHHHHHHHHHHHHHhhcccCCCceEEEEecCchhhhH
Confidence 999999999999999998888777763 46899999999999999999999876 899999999999999999
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
..+.++..+++.|++|+....++.. ..++..++.+|+++++++|++.+...+...+++++.+.|+... ++...
T Consensus 160 ~~~~~~~~~~~~G~~vv~~~~~~~~----~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 232 (344)
T cd06345 160 IDAGIKALLPEAGLEVVSVERFSPD----TTDFTPILQQIKAADPDVIIAGFSGNVGVLFTQQWAEQKVPIP---TIGIS 232 (344)
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCC----CCchHHHHHHHHhcCCCEEEEeecCchHHHHHHHHHHcCCCCc---eEEec
Confidence 9999999999999999987777644 6689999999999999999999999889999999999997432 33332
Q ss_pred CcccccCCCCcCChhhHhhccceEEEeEec----CCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHh
Q 008904 255 WLSTFIDSKSPLSLKTAKSILGALTLRQHT----PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLD 330 (549)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 330 (549)
.+....... ........+.+....+. ...+..++|.++|+++++ ..++.++...||+++++++|++++..
T Consensus 233 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~g--~~p~~~~~~~yda~~~l~~A~~~ag~ 306 (344)
T cd06345 233 VEGNSPAFW----KATNGAGNYVITAESGAPGVEAITDKTVPFTEAYEAKFG--GPPNYMGASTYDSIYILAEAIERAGS 306 (344)
T ss_pred CCcCCHHHH----HhhchhcceEEeecccccCccCCCHHHHHHHHHHHHHhC--CCCcccchHHHHHHHHHHHHHHHhcC
Confidence 221100000 11123345555443332 246778999999999886 45778889999999999999998521
Q ss_pred cCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCC
Q 008904 331 QGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLH 391 (549)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~ 391 (549)
.++..+.++|++++|+|++|+|+||++|++..
T Consensus 307 -----------------------------~~~~~i~~al~~~~~~g~~G~i~f~~~g~~~~ 338 (344)
T cd06345 307 -----------------------------TDGDALVEALEKTDFVGTAGRIQFYGDDSAFA 338 (344)
T ss_pred -----------------------------CCHHHHHHHHHhCCCcCCceeEEECCCCCcCc
Confidence 13788999999999999999999999999753
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=299.03 Aligned_cols=328 Identities=14% Similarity=0.211 Sum_probs=273.4
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCC---CCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCC
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVL---GGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQS 100 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il---~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~ 100 (549)
+||+++|++ +..|.....++++|+++||+++|+. .|++|+++++|+++++..+++.+.+++++ +|.+||||.+
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~ggi~~g~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG~~~ 80 (345)
T cd06338 1 RIGASLSLTGPLAGGGQLTQRGYELWVEDVNAAGGIKGGGKGYPVELIYYDDQSNPARAARAYERLITQDKVDFLLGPYS 80 (345)
T ss_pred CeeEEEeCCCccccccHHHHHHHHHHHHHHHhcCCcccCCCCceEEEEEecCCCCHHHHHHHHHHHHhhcCccEEecCCc
Confidence 599999998 4557788999999999999988763 47999999999999999999999999986 9999999999
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcC--CcEEEEEEecCCcccchHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG--WGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~--W~~v~ii~~~~~~g~~~~~~ 178 (549)
|..+.+++++++..++|+|+++++++.+....+|++||+.|++..++.++++++.+++ |+++++|+.+++++....+.
T Consensus 81 s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~ 160 (345)
T cd06338 81 SGLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILYADDPFSQDVAEG 160 (345)
T ss_pred chhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEEecCchHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHH
Confidence 9999999999999999999998877766655689999999999999999999999988 99999999999999999999
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccc
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (549)
+.+.+++.|++|.....++.. .+++..++++|++.++++|++.+...+...+++++++.|+..+ ..+........
T Consensus 161 ~~~~~~~~g~~v~~~~~~~~~----~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 235 (345)
T cd06338 161 AREKAEAAGLEVVYDETYPPG----TADLSPLISKAKAAGPDAVVVAGHFPDAVLLVRQMKELGYNPK-ALYMTVGPAFP 235 (345)
T ss_pred HHHHHHHcCCEEEEEeccCCC----ccchHHHHHHHHhcCCCEEEECCcchhHHHHHHHHHHcCCCCC-EEEEecCCCcH
Confidence 999999999999987777754 5789999999999999999999999999999999999998643 33222211111
Q ss_pred ccCCCCcCChhhHhhccceEEEeEecCC-------ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhc
Q 008904 259 FIDSKSPLSLKTAKSILGALTLRQHTPD-------SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQ 331 (549)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 331 (549)
.+. ........|+++...+.+. .+..+.|.++|+++++. .+..++...||+++++++|++++..
T Consensus 236 ~~~------~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~p~~~~~~~y~a~~~~~~a~~~ag~- 306 (345)
T cd06338 236 AFV------KALGADAEGVFGPTQWTPALDYKDDLFPSAAEFAAAYKEKYGK--APDYHAAGAYAAGQVLQEAVERAGS- 306 (345)
T ss_pred HHH------HHHhhhhCceeecceeccCcccccccCccHHHHHHHHHHHhCC--CCCcccHHHHHHHHHHHHHHHHhCC-
Confidence 110 1122345677776555443 36689999999999873 3666788899999999999998521
Q ss_pred CCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEE
Q 008904 332 GNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIIN 398 (549)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~ 398 (549)
. ++..+.++|++++|+|++|++.|+++|++.. .+.+++
T Consensus 307 ---------------------------~-~~~~v~~al~~~~~~~~~G~~~f~~~~~~~~-~~~~~~ 344 (345)
T cd06338 307 ---------------------------L-DPAAVRDALASNDFDTFYGPIKFDETGQNNH-PMTVVQ 344 (345)
T ss_pred ---------------------------C-CHHHHHHHHHhCCCcccccCeeECCCCCcCC-Cceeee
Confidence 0 3788999999999999999999999998744 555554
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally. |
| >cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=294.43 Aligned_cols=304 Identities=18% Similarity=0.253 Sum_probs=259.2
Q ss_pred EEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||++.|++. ..|.....++++|+++||+++|+ .|++|+++++|+++++..+++.+.+|+.+ +|.+||||.+|..
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi-~G~~iel~~~D~~~~p~~a~~~a~~li~~~~v~~viG~~~s~~ 79 (312)
T cd06346 1 KIGILLPLTGDLASYGPPMADAAELAVKEVNAAGGV-LGEPVTLVTADTQTDPAAGVAAATKLVNVDGVPGIVGAACSGV 79 (312)
T ss_pred CceeeccCCCchhhcChhHHHHHHHHHHHHHHhCCC-CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCEEEccccchh
Confidence 6999999984 45778899999999999999999 59999999999999999999999999986 9999999999999
Q ss_pred HHHH-HHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHH
Q 008904 104 AHVL-SHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (549)
Q Consensus 104 ~~~v-a~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~ 181 (549)
+.++ ++++...++|+|+++++++.+++ ..++|+||+.|++..++.++++++.+++|+++++|+.+++||+...+.+++
T Consensus 80 ~~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~~~~~g~~~~~~~~~ 159 (312)
T cd06346 80 TIAALTSVAVPNGVVMISPSSTSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGYKSVATTYINNDYGVGLADAFTK 159 (312)
T ss_pred hHhhhhhhhccCCcEEEecCCCCccceecCCCceEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEccCchhhHHHHHHHH
Confidence 9999 99999999999999888888887 457899999999999999999999999999999999999999999999999
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (549)
.+++.|++|+....+++. .+|+..++.++++.++++|++.+.+.+...++++++++|+.. .|+.++.......
T Consensus 160 ~~~~~G~~vv~~~~~~~~----~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~---~~~~~~~~~~~~~ 232 (312)
T cd06346 160 AFEALGGTVTNVVAHEEG----KSSYSSEVAAAAAGGPDALVVIGYPETGSGILRSAYEQGLFD---KFLLTDGMKSDSF 232 (312)
T ss_pred HHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHcCCCC---ceEeeccccChHH
Confidence 999999999988888755 788999999999999999999999999999999999999743 3666554322110
Q ss_pred CCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCc
Q 008904 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDT 341 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~ 341 (549)
.. ........|+++..+..+ .+..++|.++|+++|+ ..++.+++..||+++++++|
T Consensus 233 ~~----~~~~~~~~g~~~~~~~~~-~~~~~~f~~~~~~~~g--~~p~~~~~~~Yd~~~~l~~A----------------- 288 (312)
T cd06346 233 LP----ADGGYILAGSYGTSPGAG-GPGLEAFTSAYKAAYG--ESPSAFADQSYDAAALLALA----------------- 288 (312)
T ss_pred HH----hhhHHHhCCcEEccCCCC-chhHHHHHHHHHHHhC--CCCCccchhhHHHHHHHHHH-----------------
Confidence 10 111235677776655433 3778999999999997 45778889999999998654
Q ss_pred cccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEE
Q 008904 342 KLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDI 396 (549)
Q Consensus 342 ~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I 396 (549)
|.|++|++.|+++|++. ..|+-
T Consensus 289 --------------------------------~~g~~g~~~f~~~g~~~-~~~~~ 310 (312)
T cd06346 289 --------------------------------YQGASGVVDFDENGDVA-GSYDE 310 (312)
T ss_pred --------------------------------hCCCccceeeCCCCCcc-cceee
Confidence 56899999999999874 35653
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=294.24 Aligned_cols=333 Identities=19% Similarity=0.250 Sum_probs=268.8
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++ +..|.....++++|+++||++++++ |++|++++.|++++|..+.+.+++++++ +|.+|+||.+|..
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~~a~~~iNa~ggi~-G~~v~lv~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~~ 79 (344)
T cd06348 1 PLGVALALTGNAALYGQEQLAGLKLAEDRFNQAGGVN-GRPIKLVIEDSGGDEAEAINAFQTLINKDRVLAIIGPTLSQQ 79 (344)
T ss_pred CeeEEEeccCchhhcCHhHHHHHHHHHHHHhhcCCcC-CcEEEEEEecCCCChHHHHHHHHHHhhhcCceEEECCCCcHH
Confidence 699999998 4568889999999999999999985 8999999999999999999999999987 9999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHH-HHHHHHHHHHc-CCcEEEEEEecCC-cccchHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYL-MSAIAEMVSYF-GWGEVIAIFNDDD-QGRNGVTALG 180 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~-~~ai~~~l~~~-~W~~v~ii~~~~~-~g~~~~~~l~ 180 (549)
+.++.++++..++|+|+++++.+.+. ..++|+||+.+++..+ ..++..+++++ +|+++++||.+++ ||......++
T Consensus 80 ~~a~~~~~~~~~ip~i~~~~~~~~~~-~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~g~~~~~~~~ 158 (344)
T cd06348 80 AFAADPIAERAGVPVVGPSNTAKGIP-EIGPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFYAQDDAFSVSETEIFQ 158 (344)
T ss_pred HHhhhHHHHhCCCCEEeccCCCCCcC-CCCCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEEeCCchHHHHHHHHHH
Confidence 99999999999999999877665543 3468999998776554 44555667788 9999999997554 9999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|++++....++.. ..++..++.+++++++++|++.+.+.++..+++++.+.|+.. .|+....+....
T Consensus 159 ~~~~~~g~~v~~~~~~~~~----~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~ 231 (344)
T cd06348 159 KALRDQGLNLVTVQTFQTG----DTDFQAQITAVLNSKPDLIVISALAADGGNLVRQLRELGYNG---LIVGGNGFNTPN 231 (344)
T ss_pred HHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEECCcchhHHHHHHHHHHcCCCC---ceeccccccCHH
Confidence 9999999999988888754 678999999999999999999999999999999999999853 245443322111
Q ss_pred CCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcccc
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 338 (549)
.. ........|++....+.+ ..+..++|.+.|+++++ ..++.++...||+++++++|++++..++....+
T Consensus 232 -~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~yda~~~~~~A~~~a~~~~~~~~~- 303 (344)
T cd06348 232 -VF----PVCQAACDGVLVAQAYSPENDTPVNRDFVEAYKKKYG--KAPPQFSAQAFDAVQVVAEALKRLNQKQKLAEL- 303 (344)
T ss_pred -HH----HhhhHhhcCeEEEeeccCCCCCHHHHHHHHHHHHHHC--CCccHHHHHHHHHHHHHHHHHHHhcCCCccccc-
Confidence 10 122345677777665544 34668999999998886 456678889999999999999998643221000
Q ss_pred CCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceE
Q 008904 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYD 395 (549)
Q Consensus 339 ~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~ 395 (549)
+.+| .+..|.++|++++|+|++|+|.||++|++....|-
T Consensus 304 -----------~~~~-------~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~ 342 (344)
T cd06348 304 -----------PLPE-------LRTALNAALLSGQYDTPLGEISFTPDGEVLQKAFY 342 (344)
T ss_pred -----------hhhh-------HHHHHHHHHhccCCccceeeeEECCCCCcccCcee
Confidence 0011 26789999999999999999999999998766653
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=289.29 Aligned_cols=324 Identities=18% Similarity=0.254 Sum_probs=268.8
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCC--CCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCc
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRV--LGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSA 101 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~i--l~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s 101 (549)
+||++.|++ +..|.....++++|+++||+.+|+ ++|++|+++++|+++++..+++.+++++++ +|.+|+||.+|
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 80 (347)
T cd06340 1 KIGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGDSQGNPDIGATEAERLITEEGVVALVGAYQS 80 (347)
T ss_pred CceeEecCCchhhhhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEecccch
Confidence 599999998 356788899999999999999973 479999999999999999999999999988 99999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc------CCcEEEEEEecCCcccch
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF------GWGEVIAIFNDDDQGRNG 175 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~------~W~~v~ii~~~~~~g~~~ 175 (549)
..+.+++++++..++|+|+++++++.+++..+||+||+.|++..++.++++++.++ +|+++++|+.++.||...
T Consensus 81 ~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~g~~~ 160 (347)
T cd06340 81 AVTLAASQVAERYGVPFVVDGAVSDSITERGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTEFGTSV 160 (347)
T ss_pred HhHHHHHHHHHHhCCCEEeccccchHHhhcCCceEEecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecCchHhHHH
Confidence 99999999999999999998888777776668999999999999999999999876 459999999999999999
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
.+.+...+++.|++|+....++.. ..++..++.+++++++++|++.+...++..+++++++.|+... .++....+
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~----~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~ 235 (347)
T cd06340 161 AEAIKKFAKERGFEIVEDISYPAN----ARDLTSEVLKLKAANPDAILPASYTNDAILLVRTMKEQRVEPK-AVYSVGGG 235 (347)
T ss_pred HHHHHHHHHHcCCEEEEeeccCCC----CcchHHHHHHHHhcCCCEEEEcccchhHHHHHHHHHHcCCCCc-EEEecCCC
Confidence 999999999999999988888754 6789999999999999999999999999999999999998532 22222221
Q ss_pred cccccCCCCcCChhhHhhccceEEEeEecCC-ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 256 LSTFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
....... ........|++...++.+. .+..++|.++|+++++ ..++.++...||+++++++|++++..
T Consensus 236 ~~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~y~~~~~--~~~~~~~~~~Y~a~~~l~~A~~~ag~---- 304 (347)
T cd06340 236 AEDPSFV-----KALGKDAEGILTRNEWSDPKDPMAKDLNKRFKARFG--VDLSGNSARAYTAVLVIADALERAGS---- 304 (347)
T ss_pred cCcHHHH-----HHhhHhhheEEeccccCCCCChHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHHHHHHhcC----
Confidence 1111000 1223456787777655443 5778999999999987 34778889999999999999998621
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHH--HHHHhcccc---ccceeeEEccCCCCCCC
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFL--ANILQTNMT---GLSGPIHFNQDRSLLHP 392 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~--~~l~~~~f~---g~tG~v~fd~~g~r~~~ 392 (549)
. ++..+. .+|++..+. +.+|++.||++|+..+.
T Consensus 305 ------------------------~-~~~~v~~~~~~~~~~~~~~~~~~g~~~f~~~g~~~~~ 342 (347)
T cd06340 305 ------------------------A-DPEKIRDLAALASTSGEDLIMPYGPIKFDAKGQNTNA 342 (347)
T ss_pred ------------------------C-CHHHHHHHHHhccCCccccccCCCCeeECCCCCcccc
Confidence 1 366777 488777765 46789999999986543
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=285.35 Aligned_cols=317 Identities=23% Similarity=0.355 Sum_probs=247.1
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC-CChHHHHHHHHHHH-hcCcEEEEcCCCchHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFM-ETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~-~~~~~a~~~~~~l~-~~~v~aiiGp~~s~~~~ 105 (549)
+||++|+... ...+.|+++|++++|..++++++..+.+.+.+.+ +++..+++.+|+++ .++|.+||||.++..+.
T Consensus 1 ~iG~i~~~~~---~~~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~l~~~~~v~ai~G~~~s~~~~ 77 (328)
T cd06351 1 NIGAIFDRDA---RKEELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLRAVCDLLVSQGVAAIFGPTSSESAS 77 (328)
T ss_pred CeeeecCCCc---HHHHHHHHHHHHHhccCccccCCeeEEEEEEEeCCCChHHHHHHHHHHHhccCcEEEECCCCHHHHH
Confidence 4899999865 5678999999999999999887777777766655 79999999999999 77999999999999999
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHh
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLA 184 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~ 184 (549)
+++++++.++||+|+++++.+.+++ ..++++||+.|++..+++++++++.+++|++|++||+++++. ..++.+.+...
T Consensus 78 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~iiy~~~~~~-~~l~~~~~~~~ 156 (328)
T cd06351 78 AVQSICDALEIPHISISGGSEGLSDKEESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIYDSDEGL-SRLQELLDESG 156 (328)
T ss_pred HHHHHhccCCCCeEEeecCcccccccccccceEEecCCHHHHHHHHHHHHHHcCCcEEEEEEeCchHH-HHHHHHHHhhc
Confidence 9999999999999999888777765 568999999999999999999999999999999999888733 23333333333
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCC-eEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMMEA-RVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
..+..+... .+... .++++..++++++.++ ++|++++..+.+..++++|.++||+..+|+||+++......+.
T Consensus 157 ~~~~~v~~~-~~~~~----~~~~~~~l~~l~~~~~~~vil~~~~~~~~~~~l~~a~~~gm~~~~~~~i~~~~~~~~~d~- 230 (328)
T cd06351 157 IKGIQVTVR-RLDLD----DDNYRQLLKELKRSESRRIILDCSSEEEAKEILEQAVELGMMGYGYHWILTNLDLSDIDL- 230 (328)
T ss_pred ccCceEEEE-EecCC----chhHHHHHHHHhhcccceEEEECCcHHHHHHHHHHHHHhccccCCcEEEEecCCccccch-
Confidence 334444443 34433 3378999999999888 5555555548999999999999999999999999977654433
Q ss_pred CcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccc
Q 008904 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKL 343 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~ 343 (549)
........|+++++...+..+..++|..+|..... ........++++.++..+
T Consensus 231 ----~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~------------------- 283 (328)
T cd06351 231 ----EPFQYGPANITGFRLVDPDSPDVSQFLQRWLEESP----GVNLRAPIYDAALLYDAV------------------- 283 (328)
T ss_pred ----hhhccCCcceEEEEEeCCCchHHHHHHHhhhhccC----CCCcCccchhhHhhhcEE-------------------
Confidence 23445778999999999999999999999843221 111111223333222000
Q ss_pred cCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEe-eCceeeEEeEeeC
Q 008904 344 NGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQIGYWSN 413 (549)
Q Consensus 344 ~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~-~~~~~~~VG~w~~ 413 (549)
+. . ||.+.||++|+|.++.++|++++ ..++ ++||.|+.
T Consensus 284 ---------------~~-~---------------tg~i~f~~~g~r~~~~l~i~~l~~~~~~-~~vg~W~~ 322 (328)
T cd06351 284 ---------------LL-L---------------TGTVSFDEDGVRSNFTLDIIELNRSRGW-RKVGTWNG 322 (328)
T ss_pred ---------------EE-E---------------EeeEEECCCCcccceEEEEEEecCCCCc-eEEEEecC
Confidence 00 0 89999999999999999999998 6666 99999984
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors |
| >cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=280.37 Aligned_cols=336 Identities=15% Similarity=0.137 Sum_probs=269.3
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||++.|++ +..|.....++++|+++||+++|++ |++|+++++|++++|..+++.+.+|+++ +|.+|+|+.+|..
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iN~~GGi~-G~~ielv~~D~~~~p~~a~~~a~~Li~~~~V~~iiG~~~S~~ 79 (348)
T cd06355 1 KVGILHSLSGTMAISETTLKDAELLAIEEINAAGGVL-GRKIEAVVEDGASDWPTFAEKARKLLTQDKVAAVFGCWTSAS 79 (348)
T ss_pred CeEEEEcCCCcccccchhHHHHHHHHHHHHHhcCCCC-CcEEEEEEeCCCCCHHHHHHHHHHHHHhCCCcEEEeccchhh
Confidence 599999998 4567888999999999999999996 8999999999999999999999999975 8999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-cCCcEEEEEEecCCcccchHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
+.++.++++..++|+|++..... ....||+||+.+.+..++..+++++.. .++++|++++.|++||....+.+++.
T Consensus 80 ~~a~~~~~~~~~~~~i~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~~~~ 156 (348)
T cd06355 80 RKAVLPVFERHNGLLFYPVQYEG---LEQSPNVFYTGAAPNQQIIPAVDWLMSNKGGKRFYLVGSDYVYPRTANKILKAQ 156 (348)
T ss_pred HHHHHHHHhccCCceecCCCccC---CCCCCCEEEeCCChHHhHHHHHHHHHhccCCCeEEEECCcchHHHHHHHHHHHH
Confidence 99999999999999998643211 134689999999998888889898775 57999999999999999999999999
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (549)
+++.|++|+....++.. ..|+..++.++++.++++|++...+..+..+++++++.|+......++........+..
T Consensus 157 ~~~~G~~vv~~~~~~~~----~~D~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 232 (348)
T cd06355 157 LESLGGEVVGEEYLPLG----HTDFQSIINKIKAAKPDVVVSTVNGDSNVAFFKQLKAAGITASKVPVLSFSVAEEELRG 232 (348)
T ss_pred HHHcCCeEEeeEEecCC----hhhHHHHHHHHHHhCCCEEEEeccCCchHHHHHHHHHcCCCccCCeeEEccccHHHHhh
Confidence 99999999988888755 78999999999999999999998888999999999999986444445544322111110
Q ss_pred CCcCChhhHhhccceEEEeEe--cCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCC
Q 008904 263 KSPLSLKTAKSILGALTLRQH--TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSND 340 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 340 (549)
.......|++....+ ....+..++|.++|+++++....+..++...||++++++.|++++..
T Consensus 233 ------~g~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~g~~~~~~~~a~~~Y~a~~~~~~Al~~ag~---------- 296 (348)
T cd06355 233 ------IGPENLAGHYAAWNYFQSVDTPENKKFVAAFKARYGQDRVTNDPMEAAYIGVYLWKQAVEKAGS---------- 296 (348)
T ss_pred ------cChHhhcCCEEeccchhhcCCHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHHHhCC----------
Confidence 011345666554332 23557789999999999874434456678899999999999998621
Q ss_pred ccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceee
Q 008904 341 TKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQ 406 (549)
Q Consensus 341 ~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~ 406 (549)
. ++..|.++|++++|++..|.++|++.++.....+.|.+++.++.++
T Consensus 297 ------------------~-~~~~i~~aL~~~~~~~~~g~~~f~~~~~~~~~~~~i~~~~~~g~~~ 343 (348)
T cd06355 297 ------------------F-DVDKVRAALPGQSFDAPEGPVTVDPANHHLWKPVRIGRIQADGQFE 343 (348)
T ss_pred ------------------C-CHHHHHHHhccCcccCCCcceEeecCCCeeeeeeEEEEEcCCCcEE
Confidence 1 3789999999999999999999998543334455566665333334
|
This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems. |
| >cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=282.09 Aligned_cols=320 Identities=17% Similarity=0.148 Sum_probs=262.1
Q ss_pred EEEEEeccC--CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchHH
Q 008904 28 NVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~ 104 (549)
+||++.|++ +..|.....++++|+++||+.+|+ +|++|++++.|++++|..+++.+.+|+.+ +|.+|+|+.+|..+
T Consensus 1 ~iG~~~p~sG~a~~G~~~~~g~~lA~~~iNa~ggi-~G~~ielv~~D~~~~p~~a~~~a~~li~~~~v~aiiG~~~s~~~ 79 (332)
T cd06344 1 TIAVVVPIGKNPNLAEEILRGVAQAQTEINLQGGI-NGKLLKVVIANDGNDPEIAKKVADELVKDPEILGVVGHYSSDAT 79 (332)
T ss_pred CeEEEEecCCChhhHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEECCCCChHHHHHHHHHHhcccCceEEEcCCCcHHH
Confidence 489999998 456778899999999999999998 49999999999999999999999999976 99999999999999
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcC-CcEEEEEEecCC-cccchHHHHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG-WGEVIAIFNDDD-QGRNGVTALGDK 182 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~-W~~v~ii~~~~~-~g~~~~~~l~~~ 182 (549)
.+++++++..++|+|+++++++.++ ..++|+||+.|++..++.++++++++.+ |+++++|+.++. ||+...+.+.+.
T Consensus 80 ~a~~~~~~~~~ip~i~~~a~~~~lt-~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~~~~ 158 (332)
T cd06344 80 LAALDIYQKAKLVLISPTSTSVKLS-NPGPYFFRTVPSNAVAARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSA 158 (332)
T ss_pred HHHHHHHhhcCceEEccCcCchhhc-CCCCcEEEeCCCcHHHHHHHHHHHHhhcCCCeEEEEeCCCchHhHHHHHHHHHH
Confidence 9999999999999999877777776 3579999999999999999999999886 999999998876 999999999999
Q ss_pred Hhh-cCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccC
Q 008904 183 LAE-IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (549)
Q Consensus 183 ~~~-~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (549)
+++ .|.++.....++. ...++...+.++++.++++|++.+.......+++++.+.+. ...++.++.+... .
T Consensus 159 ~~~~~g~~v~~~~~~~~----~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~-~ 230 (332)
T cd06344 159 LLERGGGIVVTPCDLSS----PDFNANTAVSQAINNGATVLVLFPDTDTLDKALEVAKANKG---RLTLLGGDSLYTP-D 230 (332)
T ss_pred HHHhcCCeeeeeccCCC----CCCCHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHhcCC---CceEEecccccCH-H
Confidence 998 5888876544442 24567889999999999999999988888889999887663 2334444433211 1
Q ss_pred CCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCc
Q 008904 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDT 341 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~ 341 (549)
.. ........|+++..++.+..+..++|.+.|+++++ ..++.++...||+++++++|++++...
T Consensus 231 ~~----~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~a~~~Yda~~~l~~A~~~ag~~---------- 294 (332)
T cd06344 231 TL----LDGGKDLEGLVLAVPWHPLASPNSPFAKLAQQLWG--GDVSWRTATAYDATKALIAALSQGPTR---------- 294 (332)
T ss_pred HH----HhchhhhcCeEEEEecccccccchHHHHHHHHHhc--CCchHHHHhHHHHHHHHHHHHHhCCCh----------
Confidence 00 11224567888877777766778999999999987 457788999999999999999975211
Q ss_pred cccCCCCCccccCCccccCchHHHH-HHHHhccccccceeeEEccCCCCCCC
Q 008904 342 KLNGLGGGTLNLGALSIFDGGKKFL-ANILQTNMTGLSGPIHFNQDRSLLHP 392 (549)
Q Consensus 342 ~~~~~~~~~~~c~~~~~~~~~~~l~-~~l~~~~f~g~tG~v~fd~~g~r~~~ 392 (549)
++..+. ..+++..|+|..|++.||++|++...
T Consensus 295 -------------------~~~~~~~~~~~~~~~~g~~g~i~f~~~g~~~~~ 327 (332)
T cd06344 295 -------------------EGVQQVELSLRNFSVQGATGKIKFLPSGDRNGQ 327 (332)
T ss_pred -------------------hhhhhhhhhcccccccCCCceeEeCCCCcccCc
Confidence 133444 57778889999999999999997543
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=280.07 Aligned_cols=338 Identities=20% Similarity=0.274 Sum_probs=276.0
Q ss_pred CceEEEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcCC
Q 008904 24 PEVLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGPQ 99 (549)
Q Consensus 24 ~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~ 99 (549)
.++|+||++.|++ +..|.....++++|+++||+.+|++ |++|++++.|+.++|..+++.+.+|+. ++|.+|||+.
T Consensus 8 a~~IkIGv~~plsG~~A~~G~~~~~ga~lAv~~iNa~Ggi~-G~~velv~~D~~~dp~~a~~~A~~li~~~~V~~vvG~~ 86 (366)
T COG0683 8 ADTIKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGGIL-GRKVELVVEDDASDPATAAAVARKLITQDGVDAVVGPT 86 (366)
T ss_pred cCceEEEEEecCCchhhhhChHHHHHHHHHHHHHhhhCCcC-CceEEEEEecCCCChHHHHHHHHHHHhhcCceEEEEec
Confidence 4589999999997 5578899999999999999999986 777999999999999999999999888 5999999999
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCC-CCceEEccCCcHHHHHHHHHHHHH-cCCcEEEEEEecCCcccchHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~-~~~~~r~~ps~~~~~~ai~~~l~~-~~W~~v~ii~~~~~~g~~~~~ 177 (549)
+|..+.++.++++..++|+|+++++++.+.... .+++||+.|++..++.++++++.. ++.++|++|++++.||+...+
T Consensus 87 ~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~ 166 (366)
T COG0683 87 TSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAIIGDDYAYGEGLAD 166 (366)
T ss_pred cCcccccchhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcCCcEEEEEeCCCCcchhHHH
Confidence 999999999999999999999999888876643 355999999999999999999875 455699999999999999999
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (549)
.+++.+++.|+++.....+.+. ..++..++.+++++++++|++.+...+...+++++++.|+... ..++......
T Consensus 167 ~~~~~l~~~G~~~~~~~~~~~~----~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~r~~~~~G~~~~-~~~~~~~~~~ 241 (366)
T COG0683 167 AFKAALKALGGEVVVEEVYAPG----DTDFSALVAKIKAAGPDAVLVGGYGPDAALFLRQAREQGLKAK-LIGGDGAGTA 241 (366)
T ss_pred HHHHHHHhCCCeEEEEEeeCCC----CCChHHHHHHHHhcCCCEEEECCCCccchHHHHHHHHcCCCCc-cccccccCch
Confidence 9999999999986555556644 4459999999999999999999999999999999999997643 2333222111
Q ss_pred cccCCCCcCChhhHhhccc-eEE-EeEecC-CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 258 TFIDSKSPLSLKTAKSILG-ALT-LRQHTP-DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g-~~~-~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
..... ......+ .+. .....+ ..|..+.|.++|+++++....++.++...||++++++.|++++.. .
T Consensus 242 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~g~~~~~~~~~~~~y~a~~~~~~ai~~a~~-~-- 311 (366)
T COG0683 242 EFEEI-------AGAGGAGAGLLATAYSTPDDSPANKKFVEAYKAKYGDPAAPSYFAAAAYDAVKLLAKAIEKAGK-S-- 311 (366)
T ss_pred hhhhh-------cccCccccEEEEecccccccCcchHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHhc-C--
Confidence 11100 1111222 222 222222 345677799999999985566677899999999999999999743 1
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhcc-ccccceeeEEccCCCCCCCceEEEEEeeC
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN-MTGLSGPIHFNQDRSLLHPSYDIINVIEH 402 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~-f~g~tG~v~fd~~g~r~~~~~~I~~~~~~ 402 (549)
. ++..+.++|+... +.+.+|.+.||++|++....+.|.+++..
T Consensus 312 ------------------------~-d~~~v~~al~~~~~~~~~~G~v~~~~~~~~~~~~~~i~~~~~~ 355 (366)
T COG0683 312 ------------------------S-DREAVAEALKGGKFFDTAGGPVTFDEKGDRGSKPVYVGQVQKG 355 (366)
T ss_pred ------------------------C-CHHHHHHHHhhCCCCccCCcceeECCCCCcCCCceEEEEEEec
Confidence 1 3778999999887 68999999999999999899999888743
|
|
| >cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=278.25 Aligned_cols=320 Identities=15% Similarity=0.269 Sum_probs=265.5
Q ss_pred EEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++. ..|.....++++|+++||+++|+ +|++|++++.|+++++..+++.+++++++ +|.+||||.++..
T Consensus 1 ~iG~~~~~sG~~~~~g~~~~~g~~~a~~~iN~~ggi-~g~~l~~~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~ 79 (334)
T cd06347 1 KIGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGGV-LGKKIELVVEDNKSDKEEAANAATRLIDQDKVVAIIGPVTSGA 79 (334)
T ss_pred CeeEEecCCchhhhcCHhHHHHHHHHHHHHHhcCCC-CCeeEEEEEecCCCChHHHHHHHHHHhcccCeEEEEcCCccHh
Confidence 5999999984 45677889999999999999987 58999999999999999999999999987 9999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH-HHcCCcEEEEEEecC-CcccchHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDD-DQGRNGVTALGD 181 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l-~~~~W~~v~ii~~~~-~~g~~~~~~l~~ 181 (549)
+.+++++++..+||+|+++++.+.+++. .+++||+.|++..++.++++++ ++++|++|++|+.++ +|+....+.++.
T Consensus 80 ~~~v~~~~~~~~ip~i~~~~~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~~~~~~~~~~~~ 158 (334)
T cd06347 80 TLAAGPIAEDAKVPMITPSATNPKVTQG-KDYVFRVCFIDPFQGTVMAKFATENLKAKKAAVLYDNSSDYSKGLAKAFKE 158 (334)
T ss_pred HHHhHHHHHHCCCeEEcCCCCCCCcccC-CCeEEEeeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCchhHHHHHHHHH
Confidence 9999999999999999998777666653 2489999999988999999987 567999999999875 788888889999
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (549)
.+++.|++++....++.. ..++...++++++.++++|++.+.......+++++.+.|+. ..|+.++.|.....
T Consensus 159 ~~~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~---~~i~~~~~~~~~~~ 231 (334)
T cd06347 159 AFKKLGGEIVAEETFNAG----DTDFSAQLTKIKAKNPDVIFLPGYYTEVGLIAKQARELGIK---VPILGGDGWDSPKL 231 (334)
T ss_pred HHHHcCCEEEEEEEecCC----CCcHHHHHHHHHhcCCCEEEEcCchhhHHHHHHHHHHcCCC---CcEEecccccCHHH
Confidence 999999999988777754 56799999999999999999999999999999999998863 35776665543210
Q ss_pred CCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 262 SKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
. ........|+.....+.+ ..+..++|.+.|+++++ ..+..++...||+++++++|++++..
T Consensus 232 ~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~yda~~~~~~Al~~ag~--------- 295 (334)
T cd06347 232 E-----EAGGAAAEGVYFTTHFSADDPTPKAKKFVKAYKAKYG--KEPDAFAALGYDAYYLLADAIERAGS--------- 295 (334)
T ss_pred H-----HHHHHHhCCcEEecccCCCCCCHHHHHHHHHHHHHHC--CCcchhHHHHHHHHHHHHHHHHHhCC---------
Confidence 0 122346777766655444 35778999999998886 45777888999999999999987421
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhc-cccccceeeEEccCCCCCCC
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSLLHP 392 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~fd~~g~r~~~ 392 (549)
. ++..+.+.|++. .|+|++|++.|+++|+....
T Consensus 296 -------------------~-~~~~v~~~l~~~~~~~g~~G~v~f~~~g~~~~~ 329 (334)
T cd06347 296 -------------------T-DPEAIRDALAKTKDFDGVTGKITIDENGNPVKS 329 (334)
T ss_pred -------------------C-CHHHHHHHHHhCCCcccceeeeEECCCCCcCCC
Confidence 0 377888888765 69999999999999886433
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=277.50 Aligned_cols=341 Identities=9% Similarity=0.047 Sum_probs=267.4
Q ss_pred EEEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCch
Q 008904 27 LNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAV 102 (549)
Q Consensus 27 i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 102 (549)
|+||++.|++ +..|....+++++|+++||+++|++ |++|+++++|++++|..+++.+.+|+.+ +|.+|||+.+|.
T Consensus 1 IkIG~~~plSG~~a~~G~~~~~G~~lAv~~iNa~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~d~v~~viG~~~S~ 79 (374)
T TIGR03669 1 IKLGVLEDRSGNFALVGTPKWHASQLAIEEINKSGGIL-GRQIELIDPDPQSDNERYQELTRRLLNRDKVDALWAGYSSA 79 (374)
T ss_pred CEEEEEeCCCCCchhccHHHHHHHHHHHHHHHhcCCCC-CceeEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEcCCchH
Confidence 6899999998 4567889999999999999999996 8999999999999999999999999975 899999999999
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~ 181 (549)
.+.++.+++...++|+|.... ... ...+|+||+.|++..++.++++++....-+++++|+.+++||+.....+..
T Consensus 80 ~~~A~~~~~~~~~~~~i~~~~----~~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g~~va~l~~d~~~g~~~~~~~~~ 155 (374)
T TIGR03669 80 TREAIRPIIDRNEQLYFYTNQ----YEGGVCDEYTFAVGATARQQLGTVVPYMVEEYGKKIYTIAADYNFGQLSADWVRV 155 (374)
T ss_pred HHHHHHHHHHhcCceEEcCcc----cccccCCCCEEEcCCChHHHHHHHHHHHHHcCCCeEEEEcCCcHHHHHHHHHHHH
Confidence 999999999999999996421 122 235899999999999999999998754336899999999999999999999
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (549)
.+++.|++++....++.+ ..|+..++.+|+++++++|++.....+...++++++++|+..+ ++..........
T Consensus 156 ~~~~~G~~vv~~~~~~~g----~~Df~~~l~~i~~~~pD~V~~~~~g~~~~~~~kq~~~~G~~~~---~~~~~~~~~~~~ 228 (374)
T TIGR03669 156 IAKENGAEVVGEEFIPLS----VSQFSSTIQNIQKADPDFVMSMLVGANHASFYEQAASANLNLP---MGTSTAMAQGYE 228 (374)
T ss_pred HHHHcCCeEEeEEecCCC----cchHHHHHHHHHHcCCCEEEEcCcCCcHHHHHHHHHHcCCCCc---ccchhhhhhhhh
Confidence 999999999988888755 7899999999999999999998888888899999999998533 222111111000
Q ss_pred CCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 262 SKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.. ........|+++...+.+ ..+..++|.+.|+++|+....+..++...||+++++++|++++.+
T Consensus 229 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~F~~~y~~~~g~~p~~~~~a~~~Yda~~~l~~Ai~~AGs--------- 295 (374)
T TIGR03669 229 HK----RFEPPALKDVYAGVNYMEEIDTPENEAFVERFYAKFPDAPYINQEAENNYFSVYMYKQAVEEAGT--------- 295 (374)
T ss_pred hh----hcCchhhCCcEEeeeccccCCCHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHhCC---------
Confidence 00 001123456655544433 457789999999999864333456678899999999999998621
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHh-ccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEee
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQ-TNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~-~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~ 412 (549)
. ++..+.++|++ ..|.++.|+++||++++.....+.|.+++.++.+..+..|.
T Consensus 296 -------------------~-d~~av~~aL~~~~~~~~~~G~i~fd~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 349 (374)
T TIGR03669 296 -------------------T-DQDAVRDVLESGVEMDAPEGKVCIDGATHHMSHTMRLARADADHNITFVKEQE 349 (374)
T ss_pred -------------------C-CHHHHHHHHHcCCeEECCCccEEEcCCCCeeeeeeEEEEEcCCCCEEEEEecC
Confidence 1 37889999997 57999999999998765444445566665444334444443
|
Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization. |
| >cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=279.56 Aligned_cols=314 Identities=18% Similarity=0.181 Sum_probs=264.5
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 104 (549)
+||++.|++ +..|.....++++|+++||+.+|++ |++|+++++|+++++..+++.++++++++|.+||||.+|..+
T Consensus 1 ~IG~l~p~sG~~a~~G~~~~~g~~~a~~~iN~~GGi~-G~~i~l~~~D~~~~p~~a~~~a~~lv~~~v~aiiG~~~s~~~ 79 (342)
T cd06329 1 KIGVIDPLSGPFASLGELVRRGLQLAADEINAKGGVD-GRPIELVEEDNKGSPQEALRKAQKAIDDGVRLVVQGNSSSVA 79 (342)
T ss_pred CeeeeccCCCCcccccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEeccCCCChHHHHHHHHHHHHhCCeEEEcccchHHH
Confidence 589999997 3467888999999999999999985 899999999999999999999999999999999999999999
Q ss_pred HHH-------HHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcC-CcEEEEEEecCCcccch
Q 008904 105 HVL-------SHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFG-WGEVIAIFNDDDQGRNG 175 (549)
Q Consensus 105 ~~v-------a~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~-W~~v~ii~~~~~~g~~~ 175 (549)
.++ ++++..+++|+|+++++++.+++ +.++|+||+.|++..++.++++++.+.+ |+++++++.++.||...
T Consensus 80 ~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~k~v~i~~~~~~~g~~~ 159 (342)
T cd06329 80 LALTEAVRKHNQRNPGKEVLYLNYASVAPALTGEKCSFWHFRTDANTDMKMEALASYIKKQPDGKKVYLINQDYSWGQDV 159 (342)
T ss_pred HHhhhhhhhhhhhhccCCeEEEecCCCCchhhhccCcceEEEecCChHHHHHHHHHHHHhcccCceEEEEeCChHHHHHH
Confidence 988 78888999999998877777776 4679999999999999999999998876 99999999999999999
Q ss_pred HHHHHHHHhh--cCeEEEEEEccCCCCCCCh-hhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 176 VTALGDKLAE--IRCKISYKSALPPDQSVTE-TDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 176 ~~~l~~~~~~--~g~~v~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.+.+.+.+++ .|++|+....++.. . +|+..++.++++.++++|++.....+...+++++++.|+.. .++.
T Consensus 160 ~~~~~~~~~~~~~G~~vv~~~~~~~~----~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~---~~~~ 232 (342)
T cd06329 160 AAAFKAMLAAKRPDIQIVGEDLHPLG----KVKDFSPYVAKIKASGADTVITGNWGNDLLLLVKQAADAGLKL---PFYT 232 (342)
T ss_pred HHHHHHHHHhhcCCcEEeceeccCCC----CCCchHHHHHHHHHcCCCEEEEcccCchHHHHHHHHHHcCCCc---eEEe
Confidence 9999999999 99999887777644 5 78999999999999999999888888899999999999843 2444
Q ss_pred eCCcccccCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHh
Q 008904 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLD 330 (549)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 330 (549)
.......+ . ........|.+....+.+ ..+..++|.++|+++++ ..++.++...||+++++++|+++...
T Consensus 233 ~~~~~~~~-~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~y~~~~~~~~a~~~ag~ 304 (342)
T cd06329 233 PYLDQPGN-P-----AALGEAGLGLVVAVAYWHPNDTPANRAFVEAFKAKYG--RVPDYYEGQAYNGIQMLADAIEKAGS 304 (342)
T ss_pred ccccchhH-H-----HhhcccccceEEeeeccCCCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHHHHHHHhCC
Confidence 43322211 0 122234567666555433 35778999999998886 45677788999999999999997411
Q ss_pred cCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccC
Q 008904 331 QGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQD 386 (549)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~ 386 (549)
- ++..+.++|++++|++..|++.|++.
T Consensus 305 ----------------------------~-~~~~v~~al~~~~~~~~~g~~~~~~~ 331 (342)
T cd06329 305 ----------------------------T-DPEAVAKALEGMEVDTPVGPVTMRAS 331 (342)
T ss_pred ----------------------------C-CHHHHHHHHhCCccccCCCCeEEccc
Confidence 0 37889999999999999999999863
|
Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids. |
| >cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=276.75 Aligned_cols=320 Identities=15% Similarity=0.133 Sum_probs=264.3
Q ss_pred EEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++. ..|.....++++|+++||+++|+ .|++|+++++|++++|..+++.+++|+++ +|.+|+|+.+|..
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gGi-~G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~ 79 (333)
T cd06331 1 KIGLLFSLSGPAAISEPSLRNAALLAIEEINAAGGI-LGRPLELVVEDPASDPAFAAKAARRLIRDDKVDAVFGCYTSAS 79 (333)
T ss_pred CeEEEecCCCccccccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEECCCCCHHHHHHHHHHHHhccCCcEEEecccHHH
Confidence 5999999983 45778899999999999999998 48999999999999999999999999987 9999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
+.++.++++..++|+|++...... ...+++||+.|+...++.++++++...+|++|++|+.++.||+.....+.+.+
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~~~~ 156 (333)
T cd06331 80 RKAVLPVVERGRGLLFYPTQYEGG---ECSPNVFYTGATPNQQLLPLIPYLMEKYGKRFYLIGSDYVWPRESNRIARALL 156 (333)
T ss_pred HHHHHHHHHhcCceEEeCCCCCCC---cCCCCeEEccCChHHhHHHHHHHHHHhcCCeEEEECCCchhHHHHHHHHHHHH
Confidence 999999999999999986543221 23589999999999999999998877679999999999999999999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
++.|.+|+....++.. .+|+..++.++++.++++|++.+...+...+++++.+.|+..... ++........ ...
T Consensus 157 ~~~G~~vv~~~~~~~~----~~d~~~~v~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~-~~~ 230 (333)
T cd06331 157 EELGGEVVGEEYLPLG----TSDFGSVIEKIKAAGPDVVLSTLVGDSNVAFYRQFAAAGLDADRI-PILSLTLDEN-ELA 230 (333)
T ss_pred HHcCCEEEEEEEecCC----cccHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHHHcCCCcCCC-eeEEcccchh-hhh
Confidence 9999999988888855 688999999999999999999999999999999999999863333 3333222111 110
Q ss_pred CcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCc
Q 008904 264 SPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDT 341 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~ 341 (549)
........|++...++.+ ..+..+.|.++|+++++....++.++...||++++++.|++++..
T Consensus 231 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yda~~~~~~A~~~ag~----------- 295 (333)
T cd06331 231 ----AIGAEAAEGHYSAASYFQSLDTPENKAFVARYRARYGDDAVINSPAEAAYEAVYLWAAAVEKAGS----------- 295 (333)
T ss_pred ----ccChhhhCCcEeechhhhhcCChhHHHHHHHHHHHcCCCcCCCchhHHHHHHHHHHHHHHHHcCC-----------
Confidence 011134567777655433 356788999999988864335678889999999999999998411
Q ss_pred cccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCC
Q 008904 342 KLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLL 390 (549)
Q Consensus 342 ~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~ 390 (549)
. ++..|.++|++++|+|++|.+.|++++++.
T Consensus 296 -----------------~-~~~~l~~al~~~~~~~~~G~i~f~~~~~~~ 326 (333)
T cd06331 296 -----------------T-DPEAVRAALEGVSFDAPQGPVRIDPDNHHT 326 (333)
T ss_pred -----------------C-CHHHHHHHhhcCcccCCCCceEecCCCCcc
Confidence 0 378899999999999999999999988764
|
This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t |
| >cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=276.38 Aligned_cols=339 Identities=14% Similarity=0.196 Sum_probs=276.4
Q ss_pred CCceEEEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 008904 23 KPEVLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 98 (549)
.+++|+||+++|++ +..|.....++++|++++|+.+|++ |++|+++++|+++++..+++.+.+++.+ +|.+|||+
T Consensus 3 ~~~~i~iG~~~~~sG~~a~~g~~~~~g~~~a~~~~Na~gGi~-G~~i~l~~~D~~~~~~~a~~~a~~li~~~~v~avvG~ 81 (362)
T cd06343 3 TDTEIKIGNTMPLSGPASAYGVIGRTGAAYFFMINNDQGGIN-GRKIELIVEDDGYSPPKTVEQTRKLVESDEVFAMVGG 81 (362)
T ss_pred CCceEEEeeccCCCCchhhhcHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEecCCCChHHHHHHHHHHHhhcCeEEEEec
Confidence 35789999999998 3457788999999999999999985 8999999999999999999999999975 99999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHH-HHcCCcEEEEEEecCCcccchH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l-~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
.+|..+.+++++++..++|+|++.++.+.+++ +.+||+||+.|++..++.++++++ ++++|+++++|+.++.||....
T Consensus 82 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~ 161 (362)
T cd06343 82 LGTPTNLAVQKYLNEKKVPQLFPASGASKWNDPKPFPWTFGWQPSYQDEARIYAKYLVEEKPNAKIAVLYQNDDFGKDYL 161 (362)
T ss_pred CCcHHHHHhHHHHHhcCCceEecccccHhhhCCCCCCceEecCCChHHHHHHHHHHHHHhCCCceEEEEEeccHHHHHHH
Confidence 99999999999999999999998777677776 378999999999999999999975 5689999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+.+.+++.|++++....++.. .+++..++.++++.++++|++.+...+...+++++++.|+... ++..+.+
T Consensus 162 ~~~~~~~~~~G~~vv~~~~~~~~----~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~ 234 (362)
T cd06343 162 KGLKDGLGDAGLEIVAETSYEVT----EPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKAAELGWKPT---FLLSSVS 234 (362)
T ss_pred HHHHHHHHHcCCeEEEEeeecCC----CccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHHcCCCce---EEEEecc
Confidence 99999999999999988888754 6789999999999999999999999999999999999997632 5555433
Q ss_pred ccccC-CCCcCChhhHhhccceEEEeEec-------CCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHH
Q 008904 257 STFID-SKSPLSLKTAKSILGALTLRQHT-------PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLF 328 (549)
Q Consensus 257 ~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 328 (549)
..... .. ........|++....+. ...+..++|.+.|+++++....++.+....||++.++++|++++
T Consensus 235 ~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~y~a~~~~~~a~~~a 310 (362)
T cd06343 235 ASVASVLK----PAGLEAAEGVIAAAYLKDPTDPAWADDPGVKEFIAFYKKYFPEGDPPDTYAVYGYAAAETLVKVLKQA 310 (362)
T ss_pred cccHHHHH----HhhhHhhCceEEEEEecCCCccccccCHHHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHHh
Confidence 22110 10 11123466776655432 23567889999999888643357788889999999999999985
Q ss_pred HhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccc---cc-cceeeEEccCCCCCCCceEEEEEee
Q 008904 329 LDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNM---TG-LSGPIHFNQDRSLLHPSYDIINVIE 401 (549)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f---~g-~tG~v~fd~~g~r~~~~~~I~~~~~ 401 (549)
.. . . ++..+.++|+++++ .+ ..|++.|++++++....+.|.++++
T Consensus 311 g~---~------------------------~-~~~~v~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 359 (362)
T cd06343 311 GD---D------------------------L-TRENIMKQAESLKDVLPDLLPGIRINTSPDDHLPIEQMQLMRFEG 359 (362)
T ss_pred CC---C------------------------C-CHHHHHHHHHhCCCCCccccCccceecCccccccceeEEEEEEec
Confidence 21 0 1 37889999999987 33 3358999876655555666666653
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=270.52 Aligned_cols=328 Identities=18% Similarity=0.230 Sum_probs=265.4
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||++.|++ +..|.....++++|++++|+++|+ +|++|+++++|+++++..+.+.+.+|+.+ +|.+|+|+.+|..
T Consensus 1 ~IG~~~plsG~~a~~G~~~~~g~~~a~~~iN~~ggi-~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~V~~i~G~~~s~~ 79 (340)
T cd06349 1 LIGVAGPLTGDNAQYGTQWKRAFDLALDEINAAGGV-GGRPLNIVFEDSKSDPRQAVTIAQKFVADPRIVAVLGDFSSGV 79 (340)
T ss_pred CeeEEecCCCcchhcCccHHHHHHHHHHHHHhhCCc-CCeEEEEEEeCCCCChHHHHHHHHHHhccCCeEEEECCCccHh
Confidence 699999998 456888999999999999999999 59999999999999999999999999976 8999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH-HHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l-~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
+.+++++++..++|+|+++++.+.+++ ..+|+||+.|++..+..++++++ ++++|+++++++.+++||....+.+.+.
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~ 158 (340)
T cd06349 80 SMAASPIYQRAGLVQLSPTNSHPDFTK-GGDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKA 158 (340)
T ss_pred HHHhHHHHHhCCCeEEecCCCCCcccc-CCCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCChHhHHHHHHHHHH
Confidence 999999999999999998777666654 35899999999999999999986 6789999999999999999999999999
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (549)
+++.|++++....+++. ..++...+.+++.+++++|++.+...+...+++++.+.|+..+ ++...........
T Consensus 159 ~~~~g~~v~~~~~~~~~----~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~ 231 (340)
T cd06349 159 AEKLGGQVVAHEEYVPG----EKDFRPTITRLRDANPDAIILISYYNDGAPIARQARAVGLDIP---VVASSSVYSPKFI 231 (340)
T ss_pred HHHcCCEEEEEEEeCCC----CCcHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCCCCc---EEccCCcCCHHHH
Confidence 99999999987777754 6789999999999999999999999999999999999997532 4443322111000
Q ss_pred CCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCC
Q 008904 263 KSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSND 340 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 340 (549)
........|++....+.+ ..+..++|.++|+++++ ..++.++...||++.++++|++++.. .
T Consensus 232 -----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~y~~~~~~~~a~~~ag~---~------ 295 (340)
T cd06349 232 -----ELGGDAVEGVYTPTAFFPGDPRPEVQSFVSAYEAKYG--AQPDAFAAQAYDAVGILAAAVRRAGT---D------ 295 (340)
T ss_pred -----HHhHHHhCCcEEecccCCCCCCHHHHHHHHHHHHHHC--CCcchhhhhHHHHHHHHHHHHHHhCC---C------
Confidence 112235678777665544 35678999999988886 34677889999999999999998521 0
Q ss_pred ccccCCCCCccccCCccccCchHHHHHH-HHhccccccceeeEEccC-CCCCCCceEEEEEee
Q 008904 341 TKLNGLGGGTLNLGALSIFDGGKKFLAN-ILQTNMTGLSGPIHFNQD-RSLLHPSYDIINVIE 401 (549)
Q Consensus 341 ~~~~~~~~~~~~c~~~~~~~~~~~l~~~-l~~~~f~g~tG~v~fd~~-g~r~~~~~~I~~~~~ 401 (549)
....+... +.+..+.+.+|.++|+++ ++. ...|.++.+++
T Consensus 296 --------------------~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~~~ 337 (340)
T cd06349 296 --------------------RRAARDGFAKAEDVYSGVTGSTKFDPNTRRV-IKRFVPLVVRN 337 (340)
T ss_pred --------------------CHHHHHHHHHhccCcccceEeEEECCCCCCc-cCceEEEEEeC
Confidence 12223232 245567899999999987 554 34676666543
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=272.97 Aligned_cols=322 Identities=17% Similarity=0.147 Sum_probs=262.9
Q ss_pred EEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++.. .|.....++++|+++||+++++ +|++|++++.|+++++..+++.+++++.+ +|.+||||.++..
T Consensus 1 ~iG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi-~G~~v~~~~~D~~~~~~~a~~~a~~li~~~~v~aiig~~~s~~ 79 (346)
T cd06330 1 KIGVITFLSGRAAIFGEPARNGAELAVEEINAAGGI-GGRKIELVVRDEAGKPDEAIREARELVENEGVDMLIGLISSGV 79 (346)
T ss_pred CeeEEeecCCchhhhcHHHHHHHHHHHHHHhhcCCc-CCeEEEEEEecCCCCHHHHHHHHHHHHhccCCcEEEcccchHH
Confidence 59999999844 4778899999999999999988 58999999999999999999999999997 9999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcC--CcEEEEEEecCCcccchHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFG--WGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~--W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
+.+++++++..++|+|++.++++.+.+ ..++++||+.|++..+..++++++++++ |++|++|+.++++|....+.++
T Consensus 80 ~~~~~~~~~~~~ip~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~ 159 (346)
T cd06330 80 ALAVAPVAEELKVFFIATDPGTPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLDKKAKTWATINPDYAYGQDAWADFK 159 (346)
T ss_pred HHHHHHHHHHcCCeEEEcCCCCcccccCCCCCceEEecCChHHHHHHHHHHHHHhCcCccEEEEECCchHHHHHHHHHHH
Confidence 999999999999999998877777766 4689999999999999999999998874 9999999999999999999999
Q ss_pred HHHhhcCe--EEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccc
Q 008904 181 DKLAEIRC--KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (549)
Q Consensus 181 ~~~~~~g~--~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (549)
+.+++.|+ .++....++. ..+++...+.+|+..++++|++.+...+...+++++++.|+.. +..|+.+.....
T Consensus 160 ~~~~~~g~~~~~v~~~~~~~----~~~d~~~~v~~i~~~~~d~ii~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 234 (346)
T cd06330 160 AALKRLRPDVEVVSEQWPKL----GAPDYGSEITALLAAKPDAIFSSLWGGDLVTFVRQANARGLFD-GTTVVLTLTGAP 234 (346)
T ss_pred HHHHHhCCCCeecccccCCC----CCcccHHHHHHHHhcCCCEEEEecccccHHHHHHHHHhcCccc-CceEEeeccchh
Confidence 99998854 4444433332 3678999999999999999999988888999999999999854 567777664332
Q ss_pred ccCCCCcCChhhHhhccceEEEeE--ecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 259 FIDSKSPLSLKTAKSILGALTLRQ--HTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~--~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
.+. ........|++.... +.. ..+..++|.++|+++++ ..++.++...||+++++++|++++.....
T Consensus 235 ~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~y~a~~~l~~a~~~a~~~~~- 305 (346)
T cd06330 235 ELA------PLGDEMPEGVIIGGRGPYFIPPDTPENKAFVDAYQEKYG--DYPTYGAYGAYQAVMALAAAVEKAGATDG- 305 (346)
T ss_pred hhh------hhhcccCCceEEeccccCCCCCCChHHHHHHHHHHHHHC--CCCChHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 211 111234456544332 111 46778999999999886 45667788999999999999998643211
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCC
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRS 388 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~ 388 (549)
..+ ...+.++|++++|.|+.|++.|+++.+
T Consensus 306 -----------------------~~~-~~~v~~al~~~~~~~~~G~~~f~~~~~ 335 (346)
T cd06330 306 -----------------------GAP-PEQIAAALEGLSFETPGGPITMRAADH 335 (346)
T ss_pred -----------------------CCc-HHHHHHHHcCCCccCCCCceeeecCCC
Confidence 011 257999999999999999999988543
|
Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. |
| >cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=272.49 Aligned_cols=318 Identities=16% Similarity=0.138 Sum_probs=264.8
Q ss_pred EEEEEeccCCCC----chHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCch
Q 008904 28 NVGAIFSFGTVN----GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAV 102 (549)
Q Consensus 28 ~IG~l~~~~~~~----g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 102 (549)
+||+++|++... |.....++++|+++|| +|+ .|++|+++++|++++|..+++.+.+++++ +|.+|||+.+|.
T Consensus 1 ~IG~l~plsG~~~a~~g~~~~~g~~la~~~iN--ggi-~G~~v~l~~~D~~~~p~~a~~~~~~l~~~~~V~aviG~~~s~ 77 (334)
T cd06327 1 KIGVLTDMSGVYADAEGKGSVEAAELAVEDFG--GGV-LGRPIELVVADHQNKADVAAAKAREWIDRDGVDMIVGGPNSA 77 (334)
T ss_pred CcccccCCCCcCccccCHHHHHHHHHHHHHhc--CCc-cCeEEEEEEecCCCCchHHHHHHHHHHhhcCceEEECCccHH
Confidence 589999997444 7788999999999999 777 48999999999999999999999999987 999999999999
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~ 181 (549)
.+.+++++++..++|+|+++++++.+++. .+||+||+.|++..++.++++++...+++++++++.++.||+.....+++
T Consensus 78 ~~~a~~~~~~~~~vp~i~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~g~~~~~~~~~ 157 (334)
T cd06327 78 VALAVQEVAREKKKIYIVTGAGSDDLTGKDCSPYTFHWAYDTYMLANGTAPALVKAGGKKWFFLTADYAFGHSLERDARK 157 (334)
T ss_pred HHHHHHHHHHHhCceEEecCCCccccccCCCCCceEEccCChHHHHHHHHHHHHHhcCCeEEEEecchHHhHHHHHHHHH
Confidence 99999999999999999998888777763 47999999999999999999998887899999999999999999999999
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (549)
.+++.|++++....++.. .+++..++.+++..++++|++.+.......+++++++.|+.. ...++....+.....
T Consensus 158 ~~~~~G~~vv~~~~~~~~----~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ 232 (334)
T cd06327 158 VVKANGGKVVGSVRHPLG----TSDFSSYLLQAQASGADVLVLANAGADTVNAIKQAAEFGLTK-GQKLAGLLLFLTDVH 232 (334)
T ss_pred HHHhcCCEEcCcccCCCC----CccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHHHHhCCcc-CCcEEEecccHHHHH
Confidence 999999999988777754 678999999999999999999999999999999999999752 333333322211100
Q ss_pred CCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 262 SKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
........|++...++.+ ..+..++|.+.|+++++ ..+..++...||+++++++|++++...
T Consensus 233 ------~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~Y~~~~~~~~A~~~ag~~-------- 296 (334)
T cd06327 233 ------SLGLDAAQGLYLTTAWYWDLPNDETRAFVKRFQAKYG--KMPSMVQAGAYSAVLHYLKAVEAAGTD-------- 296 (334)
T ss_pred ------hhchhhhcCeEEeeeccccCCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHHHHHHHHHCCC--------
Confidence 011235677777665533 36778999999999986 347778889999999999999986221
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhcc-ccccceeeEEcc-CCCCC
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN-MTGLSGPIHFNQ-DRSLL 390 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~-f~g~tG~v~fd~-~g~r~ 390 (549)
++..+.++|+++. +++..|+++|+. +|+..
T Consensus 297 ---------------------~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~ 328 (334)
T cd06327 297 ---------------------DADKVVAKMKETPIYDLFAGNGYIRACDHQMV 328 (334)
T ss_pred ---------------------ChHHHHHhccccceeccCCCCceeeccccchh
Confidence 3567999999986 588889999987 66543
|
Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids. |
| >TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=269.69 Aligned_cols=318 Identities=14% Similarity=0.120 Sum_probs=256.9
Q ss_pred EEEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCch
Q 008904 27 LNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAV 102 (549)
Q Consensus 27 i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 102 (549)
|+||++.|++ +..|.....++++|+++||+++|++ |++|+++++|+.++|..+++.+.+|+++ +|.+|+|+.+|.
T Consensus 1 I~IG~l~plsG~~a~~g~~~~~g~~lav~~iN~~GGi~-G~~i~l~~~Dd~~~p~~a~~~a~~Lv~~~~V~~iiG~~~S~ 79 (359)
T TIGR03407 1 IKVGILHSLSGTMAISETTLKDAELMAIEEINASGGVL-GKKIEPVVEDGASDWPTFAEKARKLITQDKVAAVFGCWTSA 79 (359)
T ss_pred CeEEEEeCCCCchhhcchhHHHHHHHHHHHHHhcCCCC-CcEEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEcCCcHH
Confidence 6899999998 3567778999999999999999996 8999999999999999999999999975 899999999999
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-cCCcEEEEEEecCCcccchHHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDDDQGRNGVTALGD 181 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~~v~ii~~~~~~g~~~~~~l~~ 181 (549)
.+.++.+++...++|++.+.... .+...|++||+.+++..++.++++++.. .|.+++++++.+++||....+.+++
T Consensus 80 ~~~a~~~~~~~~~~~~i~~~~~~---~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~g~k~v~~l~~d~~~g~~~~~~~~~ 156 (359)
T TIGR03407 80 SRKAVLPVFEENNGLLFYPVQYE---GEECSPNIFYTGAAPNQQIIPAVDYLLSKKGAKRFFLLGSDYVFPRTANKIIKA 156 (359)
T ss_pred HHHHHHHHHhccCCceEeCCccc---CcccCCCEEEcCCChHHHHHHHHHHHHhccCCceEEEecCccHHHHHHHHHHHH
Confidence 99999999999999999764211 1234689999999999999999998876 5999999999999999998889999
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (549)
.+++.|++++....++.. ..|+..++.+|++.++++|++.........+++++++.|+......++..........
T Consensus 157 ~~~~~G~~vv~~~~~~~~----~~D~s~~v~~l~~~~pDav~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 232 (359)
T TIGR03407 157 YLKSLGGTVVGEDYTPLG----HTDFQTIINKIKAFKPDVVFNTLNGDSNVAFFKQLKNAGITAKDVPVVSFSVAEEEIR 232 (359)
T ss_pred HHHHcCCEEEeeEEecCC----hHhHHHHHHHHHHhCCCEEEEeccCCCHHHHHHHHHHcCCCccCCcEEEeecCHHHHh
Confidence 999999999888777754 7899999999999999999988777778889999999998643333444332211111
Q ss_pred CCCcCChhhHhhccceEEEeEe--cCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 262 SKSPLSLKTAKSILGALTLRQH--TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
. .......|+.....+ ....+..++|.++|+++++....+..++...||++.+++.|++++.+
T Consensus 233 ~------~g~~~~~G~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~y~a~~~~~~A~~~ag~--------- 297 (359)
T TIGR03407 233 G------IGPENLVGHLAAWNYFQSVDTPANKKFVKAFKAKYGDDRVTNDPMEAAYLGVYLWKAAVEKAGS--------- 297 (359)
T ss_pred h------cChHhhCCeEEeccchhcCCCHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHHHhCC---------
Confidence 0 011345676543222 23557789999999998864333344566789999999999998621
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCC
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDR 387 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g 387 (549)
. ++..+.++|++++|+++.|+++|++++
T Consensus 298 -------------------~-~~~~i~~al~~~~~~~~~G~i~f~~~~ 325 (359)
T TIGR03407 298 -------------------F-DVDAVRDAAIGIEFDAPEGKVKVDGKN 325 (359)
T ss_pred -------------------C-CHHHHHHHhcCCcccCCCccEEEeCCC
Confidence 1 378899999999999999999999844
|
Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane. |
| >cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=269.46 Aligned_cols=324 Identities=14% Similarity=0.188 Sum_probs=261.1
Q ss_pred EEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++. ..|.....++++|++++| +++ .|++|+++++|+++++..+++.+.+|+.+ +|.+|+|+.+|..
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~lAv~~in--ggi-~G~~i~l~~~D~~~~p~~a~~~~~~lv~~~~v~~viG~~~s~~ 77 (333)
T cd06359 1 KIGFITTLSGPAAALGQDMRDGFQLALKQLG--GKL-GGLPVEVVVEDDGLKPDVAKQAAERLIKRDKVDFVTGVVFSNV 77 (333)
T ss_pred CeEEEEecccchhhhhHHHHHHHHHHHHHhC--Ccc-CCEEEEEEecCCCCChHHHHHHHHHHHhhcCCcEEEccCCcHH
Confidence 5999999984 456778999999999998 566 59999999999999999999999999976 9999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
+.++++++...++|+|+++++.+.+.+ ..++|+||+.|++..+..++++++...+|+++++++.++++|+...+.+...
T Consensus 78 ~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~vail~~~~~~g~~~~~~~~~~ 157 (333)
T cd06359 78 LLAVVPPVLESGTFYISTNAGPSQLAGKQCSPYFFSTSWQNDQVHEAMGKYAQDKGYKRVFLIAPNYQAGKDALAGFKRT 157 (333)
T ss_pred HHHHHHHHHHcCCeEEecCCCccccccccCCCcEEEeeCChHhhHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHH
Confidence 999999999999999998766555655 3579999999999999999999999999999999999999999888888776
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (549)
++ .++.....++. ..+|+..++.+++++++++|++.........++++++++|+.. ...++........ ..
T Consensus 158 ~~---~~v~~~~~~~~----~~~d~~~~i~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~-~~ 228 (333)
T cd06359 158 FK---GEVVGEVYTKL----GQLDFSAELAQIRAAKPDAVFVFLPGGMGVNFVKQYRQAGLKK-DIPLYSPGFSDEE-DT 228 (333)
T ss_pred hC---ceeeeeecCCC----CCcchHHHHHHHHhCCCCEEEEEccCccHHHHHHHHHHcCccc-CCeeeccCcccCH-HH
Confidence 64 34555555553 3678999999999999999999888888899999999999742 3345554433211 00
Q ss_pred CCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCC
Q 008904 263 KSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSND 340 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 340 (549)
. ........|++....+.+ ..+..++|.+.|+++++ ..+..++...||+++++++|++++...
T Consensus 229 ~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~yda~~~~~~A~~~ag~~--------- 293 (333)
T cd06359 229 L----PAVGDAALGLYNTAQWAPDLDNPANKKFVADFEKKYG--RLPTLYAAQAYDAAQLLDSAVRKVGGN--------- 293 (333)
T ss_pred H----HhcchhhcCeeeccccCCCCCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHhcCC---------
Confidence 0 112245677777665554 45788999999999986 457788899999999999999986211
Q ss_pred ccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEE
Q 008904 341 TKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDII 397 (549)
Q Consensus 341 ~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~ 397 (549)
..++..+.++|+++.|+|++|++.|+++|+. ...+.++
T Consensus 294 ------------------~~~~~~v~~al~~~~~~~~~G~~~~~~~~~~-~~~~~~~ 331 (333)
T cd06359 294 ------------------LSDKDALRAALRAADFKSVRGAFRFGTNHFP-IQDFYLR 331 (333)
T ss_pred ------------------CCCHHHHHHHHhcCccccCccceEECCCCCc-ceeEEEE
Confidence 0037889999999999999999999998874 3444443
|
This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized. |
| >cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=273.23 Aligned_cols=324 Identities=17% Similarity=0.183 Sum_probs=263.9
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCC-CC--ceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCC
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVL-GG--RKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQS 100 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il-~g--~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~ 100 (549)
+||++.|++ +..|.....++++|++++|+++|++ +| ++|+++++|++++|..+.+.+.+++++ +|.+|||+.+
T Consensus 1 ~IG~l~plsG~~a~~g~~~~~g~~lA~~~iN~~GGi~~~G~~~~iel~~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~ 80 (347)
T cd06336 1 KIGFSGPLSGPAAAWGLPGLRGVQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDPAEAAANARRLVQQDGVKFILGPIG 80 (347)
T ss_pred CcceeccCcCcccccChhhHHHHHHHHHHHHhcCCcccCCceeeEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEeCCC
Confidence 589999998 4457788999999999999999986 45 589999999999999999999999977 9999999999
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
+..+.. +++++..++|+|++.+.++.++...++|+||+.|++..++.++++++.+.+|++|++|+.|+.||+...+.++
T Consensus 81 s~~~~~-~~~~~~~~ip~i~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~ 159 (347)
T cd06336 81 GGITAA-QQITERNKVLLLTAYSSDLSIDTAGNPLTFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPNDAYGQPWVAAYK 159 (347)
T ss_pred Cchhhh-hhhhhhcCceEEeccCCcccccccCCceEEEecCCchhHHHHHHHHHhhcCCceEEEEccCCchhHHHHHHHH
Confidence 998888 9999999999999988888776555789999999999999999999988999999999999999999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchH-HHHHHHHHHHHcCCCCCCeEEEEeCCcccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 259 (549)
+.+++.|++++....++.. ..|+..++.+++++++++|++.+... +...+++++++.|+... ..++........
T Consensus 160 ~~l~~~G~~vv~~~~~~~~----~~D~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~ 234 (347)
T cd06336 160 AAWEAAGGKVVSEEPYDPG----TTDFSPIVTKLLAEKPDVIFLGGPSPAPAALVIKQARELGFKGG-FLSCTGDKYDEL 234 (347)
T ss_pred HHHHHcCCEEeeecccCCC----CcchHHHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHHcCCCcc-EEeccCCCchHH
Confidence 9999999999988777754 78999999999999999999998888 99999999999997642 222211111110
Q ss_pred cCCCCcCChhhHhhccceEEEeEecC----CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCc
Q 008904 260 IDSKSPLSLKTAKSILGALTLRQHTP----DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335 (549)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~ 335 (549)
.. ........|++...+..+ ..+..++|.++|+++++. .+..+....||++.++++|++++...
T Consensus 235 ~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~p~~~~~~~y~~~~~~~~Al~~ag~~---- 302 (347)
T cd06336 235 LV------ATGADFMEGVYFQFPDVDDPALAFPRAKAFVEEYKKRYGE--PPNSEAAVSYDAVYILKAAMEAAGSV---- 302 (347)
T ss_pred HH------HhcHHhhCceEEEeecccccccCCHHHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHHHHHHHhcCCC----
Confidence 10 111245678777766544 467789999999999863 47778889999999999999985211
Q ss_pred cccCCccccCCCCCccccCCccccCchHHHHHHHHh-------ccccccceeeEEccCCCCCCCc
Q 008904 336 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQ-------TNMTGLSGPIHFNQDRSLLHPS 393 (549)
Q Consensus 336 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~-------~~f~g~tG~v~fd~~g~r~~~~ 393 (549)
+....+...++. ..|.+..|.+.||++|+.+.+.
T Consensus 303 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 343 (347)
T cd06336 303 ------------------------DDTAAVAALAAMLGVGKPAFGYARWWGKELFGVNGALVGPW 343 (347)
T ss_pred ------------------------CcHHHHHHHhhccCCCcCccccccccccccccCCCccccCc
Confidence 012333333332 5688899999999999976543
|
This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=268.77 Aligned_cols=332 Identities=21% Similarity=0.301 Sum_probs=270.7
Q ss_pred eEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcCCCc
Q 008904 26 VLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGPQSA 101 (549)
Q Consensus 26 ~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~~s 101 (549)
+|+||+++|++.. .|.....++++|++++|+++|++ |++|+++++|+.+++..+.+.+.++++ ++|.+|||+.++
T Consensus 1 ~i~IG~~~~~sG~~a~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~l~~~~~v~~vvg~~~s 79 (343)
T PF13458_consen 1 PIKIGVLVPLSGPFAPYGQDFLRGAELAVDEINAAGGIN-GRKIELVVYDDGGDPAQAVQAARKLIDDDGVDAVVGPLSS 79 (343)
T ss_dssp SEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEET-TEEEEEEEEE-TT-HHHHHHHHHHHHHTSTESEEEESSSH
T ss_pred CEEEEEEECCCChhhhhhHHHHHHHHHHHHHHHHhCCcC-CccceeeeccCCCChHHHHHHHHHhhhhcCcEEEEecCCc
Confidence 5899999999854 46678999999999999999995 899999999999999999999999998 799999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHH-HcCCcEEEEEEecCCcccchHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~-~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
..+.++++++...++|+|++++..+ ...++|+||+.|++..++.++++++. +++.+++++|+.++++|+...+.+.
T Consensus 80 ~~~~~~~~~~~~~~ip~i~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~ 156 (343)
T PF13458_consen 80 AQAEAVAPIAEEAGIPYISPSASSP---SPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFR 156 (343)
T ss_dssp HHHHHHHHHHHHHT-EEEESSGGGG---TTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcEEEEeeccCC---CCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHH
Confidence 9999999999999999999654332 24578999999999999999999865 5899999999999999999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|++++....++.. ..++..+++++++.++++|++.+.+.++..+++++.+.|+..+.+.......+...+
T Consensus 157 ~~~~~~G~~vv~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (343)
T PF13458_consen 157 KALEAAGGKVVGEIRYPPG----DTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQLRQLGLKPPRIPLFGTSLDDASL 232 (343)
T ss_dssp HHHHHTTCEEEEEEEE-TT----SSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHHHHHTTGCSCTEEEEEGGGSSHHH
T ss_pred HHHhhcCceeccceecccc----cccchHHHHHHhhcCCCEEEEeccchhHHHHHHHHHhhccccccceeeccccCcHHH
Confidence 9999999998877778755 689999999999999999999999999999999999998764333333333222111
Q ss_pred CCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcccc
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 338 (549)
. ........|++....+.+ ..+..++|.++|++.++....++.++...||++.+++.|++++. .
T Consensus 233 ~------~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yda~~~~~~al~~~g----~---- 298 (343)
T PF13458_consen 233 Q------QLGGDALEGVYIVSPWFPDPDSPAVKQFQERYRAAYGEEPPPSLYAAQGYDAARLLAQALERAG----S---- 298 (343)
T ss_dssp H------HHHGGGGTTEEEEESGGGTGGSHHHHHHHHHHHHHHSSTGGTCHHHHHHHHHHHHHHHHHHHHT----S----
T ss_pred H------HhhhhhccCceeecccCCCCCCHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhC----C----
Confidence 1 111235778887776554 45778999999999997533478889999999999999999861 1
Q ss_pred CCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEe
Q 008904 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI 400 (549)
Q Consensus 339 ~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~ 400 (549)
. ++..+.++|++++|+|+.|++.|++.+......+.|++++
T Consensus 299 --------------------~-~~~~v~~al~~~~~~g~~g~~~~~~~~~~~~~~~~i~~v~ 339 (343)
T PF13458_consen 299 --------------------L-DREAVREALESLKYDGLFGPISFDPPDHQANKPVYIVQVK 339 (343)
T ss_dssp --------------------H-HHHHHHHHHHTSEEEETTEEEEEETTTSBEEEEEEEEEEE
T ss_pred --------------------C-CHHHHHHHHHhCCCcccccceEEeCCCCccccCeEEEEEe
Confidence 1 4889999999999999999999976555566777787776
|
... |
| >cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=264.11 Aligned_cols=324 Identities=16% Similarity=0.209 Sum_probs=269.4
Q ss_pred EEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcCCCchH
Q 008904 28 NVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~~s~~ 103 (549)
+||+++|++.. .|.....++++|++++| +++ .|++|+++++|+.+++..+.+.+.+++. ++|.+|||+.++..
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~~~--~~i-~G~~i~l~~~D~~~~~~~~~~~~~~lv~~~~v~~iig~~~s~~ 77 (336)
T cd06360 1 KVGLLLPYSGTYAALGEDITRGFELALQEAG--GKL-GGREVEFVVEDDEAKPDVAVEKARKLIEQDKVDVVVGPVHSGE 77 (336)
T ss_pred CeEEEEecccchHhhcHhHHHHHHHHHHHhC--CCc-CCEEEEEEEcCCCCChHHHHHHHHHHHHHhCCcEEEccCccHh
Confidence 58999999844 45788999999999986 344 6999999999999999999999999987 49999999999988
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
+.++.+.+...++|+|+++++++.+++. .+|++||+.|++..++..+++++.+.+|+++++++.++.+|+...+.+.+.
T Consensus 78 ~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~~~~~g~~~~~~~~~~ 157 (336)
T cd06360 78 ALAMVKVLREPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAWDYAFGYEVVEGFKEA 157 (336)
T ss_pred HHHHHHHHHhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEeccchhhHHHHHHHHHH
Confidence 8888999999999999998877777763 479999999999999999999999999999999999999999999999999
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (549)
+++.|+++.....++.. .+|+..++.++++.++++|++.....++..+++++.+.|+.. ...|+.++.+......
T Consensus 158 ~~~~G~~v~~~~~~~~~----~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~ 232 (336)
T cd06360 158 FTEAGGKIVKELWVPFG----TSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVKQYDAAGLKA-KIPLIGSGFLTDGTTL 232 (336)
T ss_pred HHHcCCEEEEEEecCCC----CcchHHHHHHHHhcCCCEEEEecccccHHHHHHHHHHcCCcc-CCeEEecccccCHHHH
Confidence 99999999877767644 679999999999999999999888889999999999999742 3355655443221111
Q ss_pred CCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCC
Q 008904 263 KSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSND 340 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 340 (549)
........|++...++.+ ..+..+.|.+.|+++++ ..++.++...||+++++++|++++....
T Consensus 233 -----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~~--~~~~~~~~~~yda~~~~~~A~~~a~~~~-------- 297 (336)
T cd06360 233 -----GAAGEAAEGVITALHYADTLDNPANQAFVKAYRAAYP--DTPSVYAVQGYDAGQALILALEAVGGDL-------- 297 (336)
T ss_pred -----HhhHhhhcCceeccccCCCCCCHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHhCCCC--------
Confidence 223356677776665443 45778999999999987 4677889999999999999999962210
Q ss_pred ccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCc
Q 008904 341 TKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPS 393 (549)
Q Consensus 341 ~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~ 393 (549)
.++..+.++|+++.|.|..|+++|+++|++....
T Consensus 298 -------------------~~~~~v~~al~~~~~~~~~g~~~f~~~~~~~~~~ 331 (336)
T cd06360 298 -------------------SDGQALIAAMAAAKIDSPRGPFTLDKAHNPIQDN 331 (336)
T ss_pred -------------------CCHHHHHHHHhcCCccCCCcceEECCCCCcccce
Confidence 0367899999999999999999999999876543
|
This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however. |
| >cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=263.04 Aligned_cols=330 Identities=17% Similarity=0.119 Sum_probs=263.5
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcCCCchH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~~s~~ 103 (549)
+||+++|++ +..|.....++++|+++||+++|++ |++|+++++|+.++|..++..+.+|++ ++|.+|+|+.+|..
T Consensus 1 kIG~~~plSG~~a~~g~~~~~g~~la~~~iN~~GGi~-G~~ielv~~D~~~~p~~a~~~a~~li~~~~V~aiiG~~~s~~ 79 (360)
T cd06357 1 RVGVLFSRTGVTAAIERSQRNGALLAIEEINAAGGVL-GRELEPVEYDPGGDPDAYRALAERLLREDGVRVIFGCYTSSS 79 (360)
T ss_pred CeEEEEcCCCCchhccHHHHHHHHHHHHHHhhcCCCC-CeEEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEeCccHHH
Confidence 699999998 5578889999999999999999985 899999999999999999999999997 59999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
+.++.++++..++|++++++... + ...+++|++.++...+..++++++...+-+++++|+.|+.||+...+.+.+.+
T Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~-~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~ 156 (360)
T cd06357 80 RKAVLPVVERHDALLWYPTLYEG-F--EYSPNVIYTGAAPNQNSVPLADYLLRHYGKRVFLVGSNYIYPYESNRIMRDLL 156 (360)
T ss_pred HHHHHHHHHhcCceEEeCCCccC-C--cccCCEEEeCCCcHHHHHHHHHHHHhcCCcEEEEECCCCcchHHHHHHHHHHH
Confidence 99999999999999998654221 1 22367888888777778889998877666899999999999999999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC-cccccCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW-LSTFIDS 262 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~-~~~~~~~ 262 (549)
++.|++++....++.. ....|+..++.+++++++++|++.+....+..++++++++|+... ...+.+.. ....+.
T Consensus 157 ~~~G~~vv~~~~~~~~--~~~~d~s~~v~~l~~~~pd~V~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~- 232 (360)
T cd06357 157 EQRGGEVLGERYLPLG--ASDEDFARIVEEIREAQPDFIFSTLVGQSSYAFYRAYAAAGFDPA-RMPIASLTTSEAEVA- 232 (360)
T ss_pred HHcCCEEEEEEEecCC--CchhhHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHcCCCcc-CceeEEeeccHHHHh-
Confidence 9999998876555533 347899999999999999999999999999999999999998643 23333322 111111
Q ss_pred CCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCC
Q 008904 263 KSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSND 340 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 340 (549)
....+...|+++...+.+ ..+..++|.+.|+++++....++.++...||+++++++|++++..
T Consensus 233 -----~~~g~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~l~~Al~~ag~---------- 297 (360)
T cd06357 233 -----AMGAEAAAGHITAAPYFSSIDTPANRAFVARYRARFGEDAPVSACAEAAYFQVHLFARALQRAGS---------- 297 (360)
T ss_pred -----hcchHhhCCcEEecccccccCChhHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHHHHHcCC----------
Confidence 111245678777655432 457789999999999874333567788999999999999998521
Q ss_pred ccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEE
Q 008904 341 TKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINV 399 (549)
Q Consensus 341 ~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~ 399 (549)
. ++..+.++|++++|++..|.+.|++.++.......+.++
T Consensus 298 ------------------~-~~~~v~~aL~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~ 337 (360)
T cd06357 298 ------------------D-DPEDVLAALLGFSFDAPQGPVRIDPDNNHTYLWPRIARV 337 (360)
T ss_pred ------------------C-CHHHHHHHhccCcccCCCcceEEeCCCCeeeeeeEEEEE
Confidence 0 377899999999999999999999865433333444455
|
This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced. |
| >cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=259.78 Aligned_cols=314 Identities=15% Similarity=0.116 Sum_probs=253.6
Q ss_pred EEEEEeccCC---CCchHHHHHHHHHHHHHHc-CCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCch
Q 008904 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINS-DPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAV 102 (549)
Q Consensus 28 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~-~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 102 (549)
+||++.|++. ..|.....++++|++++|+ .+++ +|++|++++.|++++|..++..+.+|+.+ +|.+|+|+.+|.
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~lav~~inn~~ggi-~G~~i~lv~~D~~~~p~~a~~~~~~li~~~~V~avvG~~~S~ 79 (333)
T cd06328 1 KIGLITDLSGPLAAYGKQTLTGFMLGLEYATGGTMQV-DGRPIEVIVKDDAGNPEVAVSLARELIGDDGVDILVGSTSSG 79 (333)
T ss_pred CeEEEEecCCchhhhhHHHHHHHHHHHHHHHhcCCCc-CCEEEEEEEecCCCChHHHHHHHHHHHHhcCCeEEEccCCcH
Confidence 5999999984 4677889999999999965 5666 59999999999999999999999999998 999999999999
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~ 181 (549)
.+.++.++++..++|+|++.++++.+... .++|+||+.+++..+...+++++... +++|++|+.+++||+...+.+++
T Consensus 80 ~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~g~~~~~~~~~ 158 (333)
T cd06328 80 VALAVLPVAEENKKILIVEPAAADSITGKNWNRYTFRTGRNSSQDAIAAAAALGKP-GKKIATLAQDYAFGRDGVAAFKA 158 (333)
T ss_pred HHHHHHHHHHHhCCcEEecCCCCchhhccCCCCcEEEecCChHHHHHHHHHHHHhc-CCeEEEEecCccccHHHHHHHHH
Confidence 99999999999999999987777777663 46899999988888888888887766 89999999999999999999999
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchH-HHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~-~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
.+++.|++++....+++. ..|+...+.+++++++++|++...+. ....+++++...|+... ...........
T Consensus 159 ~~~~~G~~vv~~~~~~~~----~~d~~~~v~~l~~~~pd~V~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~ 231 (333)
T cd06328 159 ALEKLGAAIVTEEYAPTD----TTDFTPYAQRLLDALKKVLFVIWAGAGGPWPKLQQMGVLGYGIE---ITLAGDILANL 231 (333)
T ss_pred HHHhCCCEEeeeeeCCCC----CcchHHHHHHHHhcCCCEEEEEecCchhHHHHHHHhhhhcCCCe---EEecccccCcc
Confidence 999999999988888755 77899999999999999998875554 56667777777665421 11111111111
Q ss_pred CCCCcCChhhHhhccceEEEeEec-CCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHT-PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.. ........+......+. +..+..+.|.++|+++++ ..++.++...||++.++++|++++..
T Consensus 232 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~g--~~p~~~~~~~y~a~~~l~~Ai~~ag~--------- 295 (333)
T cd06328 232 TM-----YKAGPGMSGASYYYHYFLPKNPVNDWLVEEHKARFG--SPPDLFTAGGMSAAIAVVEALEETGD--------- 295 (333)
T ss_pred cc-----ccccccccceeeeecCCCCCCHHHHHHHHHHHHHhC--CCcchhhHHHHHHHHHHHHHHHHhCC---------
Confidence 10 01122344555444433 566778899999999986 45777889999999999999998620
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccC
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQD 386 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~ 386 (549)
. ++..+.++|++.+|+++.|+++|+.+
T Consensus 296 -------------------~-~~~~v~~aL~~~~~~~~~g~~~f~~~ 322 (333)
T cd06328 296 -------------------T-DTEALIAAMEGMSFETPKGTMTFRKE 322 (333)
T ss_pred -------------------C-CHHHHHHHHhCCeeecCCCceEECcc
Confidence 1 37889999999999999999999953
|
Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids. |
| >cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=260.96 Aligned_cols=318 Identities=18% Similarity=0.227 Sum_probs=255.6
Q ss_pred EEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||.++|++. ..|.....++++|++++|+++|+. |++|+++++|+++++..+.+.+.+|+++ +|.+|+|+.+|..
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi~-G~~i~lv~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~ 79 (347)
T cd06335 1 KIGVDADFSGGSAPSGVSIRRGARLAIDEINAAGGVL-GRKLELVERDDRGNPARGLQNAQELAADEKVVAVLGGLHTPV 79 (347)
T ss_pred CeeeecCccCccccccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEeccCCCCcHHHHHHHHHHhccCCeEEEEcCCCCHH
Confidence 5999999984 567888999999999999999985 8999999999999999999999999987 8999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCC--CCCCceEEccCCcHHHHHHHHHHHH-HcCCcEEEEEEecCCcccchHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~~l~-~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
+.+++.+++..+||+|++.++.+.+++ ..++|+||+.|++..++.++++++. +.+|++|+++|.+++||+.....+.
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~~Fr~~~~~~~~~~~~a~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~ 159 (347)
T cd06335 80 ALANLEFIQQNKIPLIGPWAAGTPITRNGAPPNYIFRVSADDSIQAPFLVDEAVKRGGFKKVALLLDNTGWGRSNRKDLT 159 (347)
T ss_pred HHhhhHHHHhcCCcEEecCCCCcccccCCCCCCCEEEeccChHHHHHHHHHHHHHhcCCCeEEEEeccCchhhhHHHHHH
Confidence 999999999999999998777666654 3468999999999999999999875 4669999999999999999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|+++.....++.. ..++...+.+|++.++++|++.+.......+++++++.|+.. .++..+.....
T Consensus 160 ~~~~~~G~~v~~~~~~~~~----~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~ 231 (347)
T cd06335 160 AALAARGLKPVAVEWFNWG----DKDMTAQLLRAKAAGADAIIIVGNGPEGAQIANGMAKLGWKV----PIISHWGLSGG 231 (347)
T ss_pred HHHHHcCCeeEEEeeecCC----CccHHHHHHHHHhCCCCEEEEEecChHHHHHHHHHHHcCCCC----cEecccCCcCc
Confidence 9999999999988888755 678999999999999999999999999999999999999743 22222111110
Q ss_pred CCCCcCChhhHhhccceEEEeEec---CCChhHHHHHHHHHhhcCCCC----CCCchhhhHhHHHHHHHHHHHHHHhcCC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHT---PDSKRRRDFVSRWNTLSNGSI----GLNPYGLYAYDTVWMIARALKLFLDQGN 333 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~----~~~~~~~~~yDav~~~a~Al~~~~~~~~ 333 (549)
... ........|++....+. +..+..++|.++|+++++... .++.++..+||+++++++|++++...
T Consensus 232 ~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aYd~~~~l~~A~~~ag~~-- 305 (347)
T cd06335 232 NFI----EGAGPAANDALMIQTFIFEPPSNPKAKAFLAAYHKKYPEKKPADIPAPVGAAHAYDAVHLLAAAIKQAGST-- 305 (347)
T ss_pred hhh----hccchhhcCcEEEEeeccccCCCHHHHHHHHHHHHHhCCCcccccCcchhHHHHHHHHHHHHHHHHHhcCC--
Confidence 110 11123456766554322 246788999999999986432 34556778999999999999985210
Q ss_pred CccccCCccccCCCCCccccCCccccCchHHHHHHHHhcc--cccccee--eEEccCC
Q 008904 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN--MTGLSGP--IHFNQDR 387 (549)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~--f~g~tG~--v~fd~~g 387 (549)
....+.++|+++. +.|+.|. +.|++..
T Consensus 306 ---------------------------~~~~v~~al~~~~~~~~G~~~~~~~~~~~~~ 336 (347)
T cd06335 306 ---------------------------DGRAIKRALENLKKPVEGLVKTYDKPFSKED 336 (347)
T ss_pred ---------------------------CHHHHHHHHHhccCCceeeecccCCCCChhh
Confidence 2467889998764 6677763 4576543
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=273.64 Aligned_cols=368 Identities=19% Similarity=0.303 Sum_probs=291.0
Q ss_pred CCceEEEEEEeccCC-----CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc--CcEEE
Q 008904 23 KPEVLNVGAIFSFGT-----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAI 95 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-----~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~ai 95 (549)
..-+..+++++|+.. ..|.....|+++|++++|+++.||||+.|.++..|++|++..+++...+++-. .-..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~g~~~~Pav~~Al~~vn~~~~ilp~y~L~~~~~ds~C~~~~g~k~~fdll~~~p~k~ml 117 (865)
T KOG1055|consen 38 SRCPRRIVGIGPLGPGSGGWPGGQACLPAVELALEDVNSRSDILPGYRLKLIHHDSECDPGQGTKALYDLLYNGPNKLML 117 (865)
T ss_pred CCCCceeeeeecCccccCCCcCcccccHHHHHHHHHhhccccccCCcEEEEEeccccCCccccHHHHHHHHHcCCchhee
Confidence 334788999999862 33567799999999999999999999999999999999999999999999876 45667
Q ss_pred EcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccc
Q 008904 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRN 174 (549)
Q Consensus 96 iGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~ 174 (549)
+|+ |+..+..++.-+..|+.-+++|++++|.+++ ++||++||+.||+.......+.++++|+|++|+.++....-...
T Consensus 118 l~G-Cs~v~~~iaea~~~w~l~~lsy~~ssp~ls~r~rfp~~frt~PS~~~~np~rl~l~~~~~w~rvgt~~q~e~~f~~ 196 (865)
T KOG1055|consen 118 LGG-CSSVTTLIAEAAKMWNLIVLSYGASSPALSNRKRFPTFFRTHPSANAHNPTRIKLLKKFGWKRVATLQQTEEVFSS 196 (865)
T ss_pred ccC-CCCcchHHHhhccccceeeecccCCCccccchhhcchhhhcCCccccCCcceeeechhcCcceeeeeeeehhhhcc
Confidence 777 9999999999999999999999999999999 68999999999999999999999999999999999988877777
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
..+.+...+.+.+++++.+..+. .|....++.++....|+|+-..+...++.+++++++.+|.+..|+|+...
T Consensus 197 ~~~dl~~~~~~~~ieiv~~qsf~-------~dp~~~vk~l~~~D~RiI~g~f~~~~Arkv~C~~Y~~~myg~ky~w~~~g 269 (865)
T KOG1055|consen 197 TLNDLEARLKEAGIEIVFRQSFS-------SDPADSVKNLKRQDARIIVGLFYETEARKVFCEAYKERLYGRKYVWFLIG 269 (865)
T ss_pred hHHHHHHhhhccccEEEEeeccc-------cCHHHHHhhccccchhheeccchHhhhhHHHHhhchhhcccceeEEEEEE
Confidence 88889989999999998876543 34556788999889999999999999999999999999999999999988
Q ss_pred CcccccC-----CCCcCChhhHhhccceEEEeEecCCC--------hhHHHHHHHHHhhcC---CCCCCCchhhhHhHHH
Q 008904 255 WLSTFID-----SKSPLSLKTAKSILGALTLRQHTPDS--------KRRRDFVSRWNTLSN---GSIGLNPYGLYAYDTV 318 (549)
Q Consensus 255 ~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~~~---~~~~~~~~~~~~yDav 318 (549)
+....+. .....-++...+..|.+++.....+. -..+.|+..+..... ..........++|||+
T Consensus 270 ~y~d~w~ev~~~~~~ctveem~~A~eg~~s~e~~pl~~~~~~tisg~T~~~~l~~~~~~r~~~~~~~~~~~~~~~ayd~I 349 (865)
T KOG1055|consen 270 WYADNWWEITHPSENCTVEEMTEAAEGHITTEFVMLSPANITTISGMTAQEFLEELTKYRKRHPEETGGFQEAPLAYDAI 349 (865)
T ss_pred eeccchhhccCchhhhhHHHHHHHHhhheeeeeeccccccceeeccchhHHHHHHHHhhhccccccccCcccCchHHHHH
Confidence 6554432 11111245567888888775432111 123445544433221 1223445678899999
Q ss_pred HHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCcccc--CchHHHHHHHHhccccccceeeEEccCCCCCCCceEE
Q 008904 319 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIF--DGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDI 396 (549)
Q Consensus 319 ~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~--~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I 396 (549)
|++|+|++++.........+ ...+... .-...|.++|.+++|.|++|.|.|.. |+|. +...|
T Consensus 350 wa~ala~n~t~e~l~~~~~~--------------l~~f~y~~k~i~d~i~eamn~tsF~GvsG~V~F~~-geR~-a~t~i 413 (865)
T KOG1055|consen 350 WALALALNKTMEGLGRSHVR--------------LEDFNYNNKTIADQIYEAMNSTSFEGVSGHVVFSN-GERM-ALTLI 413 (865)
T ss_pred HHHHHHHHHHHhcCCcccee--------------ccccchhhhHHHHHHHHHhhcccccccccceEecc-hhhH-HHHHH
Confidence 99999999987654211100 0011111 12578999999999999999999987 9984 66678
Q ss_pred EEEeeCceeeEEeEeeCCC
Q 008904 397 INVIEHGYPQQIGYWSNYS 415 (549)
Q Consensus 397 ~~~~~~~~~~~VG~w~~~~ 415 (549)
-+++++.. +++|.|+...
T Consensus 414 eQ~qdg~y-~k~g~Yds~~ 431 (865)
T KOG1055|consen 414 EQFQDGKY-KKIGYYDSTK 431 (865)
T ss_pred HHHhCCce-Eeeccccccc
Confidence 88888777 9999998764
|
|
| >cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=256.70 Aligned_cols=318 Identities=13% Similarity=0.099 Sum_probs=255.5
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||++.|++ +..|.....++++|+++||+.+|++ |++|+++.+|++++|..+++.+.+|+.+ +|.+|||+.+|..
T Consensus 1 ~IG~~~~lSG~~a~~G~~~~~g~~la~~~iNa~gGi~-Gr~v~lv~~D~~~~p~~a~~~~~~Li~~~~V~aiiG~~~s~~ 79 (334)
T cd06356 1 KVGSLEDRSGNFALYGTPKVHATQLAVDEINASGGIL-GREVELVDYDTQSDNERYQQYAQRLALQDKVDVVWGGISSAS 79 (334)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCCC-CceEEEEEECCCCCHHHHHHHHHHHHHhCCCCEEEeCcchHH
Confidence 599999998 4568889999999999999999985 8999999999999999999999999975 9999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
+.++.++++..++|+|....... +...+|+||+.+++..++.++++++...+-+++++|+.+++||......+.+.+
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~~~---~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~vail~~d~~~g~~~~~~~~~~~ 156 (334)
T cd06356 80 REAIRPIMDRTKQLYFYTTQYEG---GVCDRNTFCTGATPAQQFSTLVPYMMEKYGKKVYTIAADYNFGQISAEWVRKIV 156 (334)
T ss_pred HHHHHHHHHhcCceEEeCCCccC---CcccCCEEEeCCCcHHHHHHHHHHHHHccCCeEEEECCCchhhHHHHHHHHHHH
Confidence 99999999999999998533221 123489999999999999999999887655889999999999999999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
++.|++++....++.. ..|++..+.+++..++++|++.........+++++++.|+ .. ...+............
T Consensus 157 ~~~G~~vv~~~~~~~~----~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~-~~-~~~~~~~~~~~~~~~~ 230 (334)
T cd06356 157 EENGGEVVGEEFIPLD----VSDFGSTIQKIQAAKPDFVMSILVGANHLSFYRQWAAAGL-GN-IPMASSTLGAQGYEHK 230 (334)
T ss_pred HHcCCEEEeeeecCCC----chhHHHHHHHHHhcCCCEEEEeccCCcHHHHHHHHHHcCC-cc-CceeeeecccchhHHh
Confidence 9999999988888754 7899999999999999999998888888899999999997 11 1122221110000000
Q ss_pred CcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCc
Q 008904 264 SPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDT 341 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~ 341 (549)
........|++....+.+ ..+..++|.+.|+++++....++..+...||+++++++|++++.+
T Consensus 231 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~~~y~a~~~~~~A~~~ag~----------- 295 (334)
T cd06356 231 ----RLKPPALKDMYATANYIEELDTPANKAFVERFRAKFPDAPYINEEAENNYEAIYLYKEAVEKAGT----------- 295 (334)
T ss_pred ----ccCchhcCCeEEecchhhhcCCHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHHHHHHHCC-----------
Confidence 001134567666554332 356789999999999864222357789999999999999998621
Q ss_pred cccCCCCCccccCCccccCchHHHHHHHHh-ccccccceeeEEccCCC
Q 008904 342 KLNGLGGGTLNLGALSIFDGGKKFLANILQ-TNMTGLSGPIHFNQDRS 388 (549)
Q Consensus 342 ~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~-~~f~g~tG~v~fd~~g~ 388 (549)
. ++..|.++|++ ..|+++.|++.|++.++
T Consensus 296 -----------------~-~~~~v~~aL~~~~~~~~~~g~~~~~~~~h 325 (334)
T cd06356 296 -----------------T-DRDAVIEALESGLVCDGPEGKVCIDGKTH 325 (334)
T ss_pred -----------------C-CHHHHHHHHHhCCceeCCCceEEEecCCC
Confidence 1 37889999997 57899999999997544
|
This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis. |
| >cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-31 Score=258.47 Aligned_cols=330 Identities=15% Similarity=0.174 Sum_probs=261.3
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||++.|++ +..|.....++++|+++||+.+|++ |++|+++++|++++|..+++.+.+|+.+ +|.+|+ +.+|..
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iNa~GGI~-Gr~ielv~~D~~~~p~~a~~~a~~Li~~~~V~~i~-~~~S~~ 78 (351)
T cd06334 1 KVGLLADRTGPTAFVGIPYAAGFADYFKYINEDGGIN-GVKLEWEECDTGYEVPRGVECYERLKGEDGAVAFQ-GWSTGI 78 (351)
T ss_pred CCCccccCCCcccccChhHHHHHHHHHHHHHHcCCcC-CeEEEEEEecCCCCcHHHHHHHHHHhccCCcEEEe-cCcHHH
Confidence 589999998 4567889999999999999999995 8999999999999999999999999988 787765 578888
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcC-----CcEEEEEEecCCcccchHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFG-----WGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~-----W~~v~ii~~~~~~g~~~~~ 177 (549)
+.++++++...++|+|+++++.+.+++ ..++|+||+.|++..++.++++++...+ .++|++|+.+++||....+
T Consensus 79 ~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~~Fr~~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~ 158 (351)
T cd06334 79 TEALIPKIAADKIPLMSGSYGATLADDGAVFPYNFPVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIE 158 (351)
T ss_pred HHHhhHHHhhcCCcEEecccchhhccCCCCCCeeeeCCCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCccchhhHH
Confidence 999999999999999998766666664 5689999999999999999999987765 6999999999999999999
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (549)
.+.+.+++.|++|+....++.. .+|+..++.++++.++++|++.....+...++++++++|+.. .|+...+..
T Consensus 159 ~~~~~~~~~G~~vv~~~~~~~~----~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~~~~~G~~~---~~~~~~~~~ 231 (351)
T cd06334 159 ALKALAEKLGFEVVLEPVPPPG----PNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAKRVGLDD---KFIGNWWSG 231 (351)
T ss_pred HHHHHHHHcCCeeeeeccCCCC----cccHHHHHHHHHHcCCCEEEEecccchHHHHHHHHHHcCCCc---eEEEeeccC
Confidence 9999999999999988877754 789999999999999999999999999999999999999742 255443322
Q ss_pred cccCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCC----CCCchhhhHhHHHHHHHHHHHHHHhc
Q 008904 258 TFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSI----GLNPYGLYAYDTVWMIARALKLFLDQ 331 (549)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~----~~~~~~~~~yDav~~~a~Al~~~~~~ 331 (549)
..... ........|+++..++.+ +.|..++|.+.|+++++... .++.++...||++++++.|++++.+.
T Consensus 232 ~~~~~-----~~~g~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~~~~~~~gy~a~~~l~~Al~~ag~~ 306 (351)
T cd06334 232 DEEDV-----KPAGDAAKGYKGVTPFAGGADDPVGKEIVKEVYDKGKGSGNDKEIGSVYYNRGVVNAMIMVEAIRRAQEK 306 (351)
T ss_pred cHHHH-----HHhhhhhcCcEEeecccCCCCchHHHHHHHHHHHccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 11000 122245677776655433 56889999999999886321 34577889999999999999998765
Q ss_pred CCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCC
Q 008904 332 GNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDR 387 (549)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g 387 (549)
.......+. ...+ +-..-.+.+++....|+.|+++|...-
T Consensus 307 ~~~~~~~~~---------------~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~d 346 (351)
T cd06334 307 GGETTIAGE---------------EQLE-NLKLDAARLEELGAEGLGPPVSVSCDD 346 (351)
T ss_pred cCCCCCcHH---------------HHHH-hhhhhhhhhhhcCcccccCCceecccc
Confidence 432110000 0000 012334566677788999999997643
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-31 Score=257.90 Aligned_cols=315 Identities=15% Similarity=0.162 Sum_probs=255.7
Q ss_pred EEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||++.|++. ..|.....++++|+++||+.+|+. |++|+++++|++++|..+++.+.+|+.+ +|.+|||+.+|..
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi~-G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~v~aviG~~~s~~ 79 (333)
T cd06358 1 RIGLLVPLSGPAGIFGPSCEAAAELAVEEINAAGGIL-GREVELVIVDDGSPPAEAAAAAARLVDEGGVDAIIGWHTSAV 79 (333)
T ss_pred CeEEEecCcCchhhcchhHHHHHHHHHHHHHhcCCcC-CcEEEEEEECCCCChHHHHHHHHHHHHhCCCcEEEecCcHHH
Confidence 5999999984 368888999999999999999995 8999999999999999999999999987 8999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH-HHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l-~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
+.++.++++ .++|+|++.+.... ..++++||+.+++..++.++++++ +..+|++|++++.++.||+...+.++..
T Consensus 80 a~a~~~~~~-~~vp~i~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~i~~~~~~~g~~~~~~~~~~ 155 (333)
T cd06358 80 RNAVAPVVA-GRVPYVYTSLYEGG---ECNPGVFLTGETPEQQLAPAIPWLAEEKGARRWYLIGNDYVWPRGSLAAAKRY 155 (333)
T ss_pred HHHHHHHHh-cCceEEeCCCcCCC---CCCCCEEEcCCCcHHHHHHHHHHHHHhcCCCeEEEEeccchhhHHHHHHHHHH
Confidence 999999999 99999997443221 235899999999888887777776 5579999999999999999999999999
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC-CcccccC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT-WLSTFID 261 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~-~~~~~~~ 261 (549)
+++.|+.|+....++.. ..|+..++.++++.++++|++.........+++++++.|+..+ ++... .+.....
T Consensus 156 ~~~~G~~v~~~~~~~~~----~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~~~~ 228 (333)
T cd06358 156 IAELGGEVVGEEYVPLG----TTDFTSVLERIAASGADAVLSTLVGQDAVAFNRQFAAAGLRDR---ILRLSPLMDENML 228 (333)
T ss_pred HHHcCCEEeeeeeecCC----hHHHHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHcCCCcc---CceeecccCHHHH
Confidence 99999999987777754 7899999999999999999998888888899999999998643 22221 1111100
Q ss_pred CCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCC-CCCCchhhhHhHHHHHHHHHHHHHHhcCCCcccc
Q 008904 262 SKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGS-IGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 338 (549)
. ........|++....+.+ ..+..++|.+.|+++++.. ..+..++...||+++++++|+++...
T Consensus 229 ~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~~yda~~~~~~A~~~ag~-------- 295 (333)
T cd06358 229 L-----ASGAEAAEGLYSSSGYFASLQTPANAAFLARYRARFGDDAPPLNSLSESCYEAVHALAAAAERAGS-------- 295 (333)
T ss_pred H-----hcChHhhCCcEEeccchhhcCCHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHhCC--------
Confidence 0 001134567666544333 5678899999999998743 23566788899999999999987411
Q ss_pred CCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCC
Q 008904 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRS 388 (549)
Q Consensus 339 ~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~ 388 (549)
. ++..|.++|++++|+|.+|.+.|++++.
T Consensus 296 --------------------~-~~~~v~~al~~~~~~~~~G~~~~~~~~~ 324 (333)
T cd06358 296 --------------------L-DPEALIAALEDVSYDGPRGTVTMRGRHA 324 (333)
T ss_pred --------------------C-CHHHHHHHhccCeeeCCCcceEEccccc
Confidence 1 3788999999999999999999998864
|
This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int |
| >cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=254.71 Aligned_cols=319 Identities=17% Similarity=0.251 Sum_probs=258.5
Q ss_pred EEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++.. .|.....++++|++++| +++ .|++++++++|+.+++..+.+.+.+++.+ +|.+|||+.++..
T Consensus 1 ~IG~~~~~sg~~~~~g~~~~~g~~~a~~~~~--~~i-~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~ 77 (333)
T cd06332 1 KIGLLTTLSGPYAALGQDIRDGFELALKQLG--GKL-GGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVGPVFSNV 77 (333)
T ss_pred CeEEEeeccCchHhhhHHHHHHHHHHHHHhC--CCc-CCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEcCCccHH
Confidence 59999999844 46678999999999997 455 69999999999999999999999999987 9999999999988
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
..++.+.+...++|+|++++..+.+++. .+|++||+.|++..++..+++++...+|+++++|+.++.++....+.+.+.
T Consensus 78 ~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v~il~~~~~~~~~~~~~~~~~ 157 (333)
T cd06332 78 ALAVVPSLTESGTFLISPNAGPSDLAGKLCSPNFFRTSWQNDQVHEAMGKYAADKGYKKVVIIAPDYAAGKDAVAGFKRT 157 (333)
T ss_pred HHHHHHHHhhcCCeEEecCCCCccccccCCCCcEEEeeCChHHhHHHHHHHHHHhCCceEEEEecCcchhHHHHHHHHHh
Confidence 8888899999999999987776667663 479999999999999999999999999999999999899998888888888
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (549)
++ ..+.....++.. ..++...++++++.++++|++.........+++++++.|+.. ...++.+..+......
T Consensus 158 ~~---~~~~~~~~~~~~----~~d~~~~i~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~ 229 (333)
T cd06332 158 FK---GEVVEEVYTPLG----QLDFSAELAQIRAAKPDAVFVFLPGGMAVNFVKQYDQAGLKK-KIPLYGPGFLTDQDTL 229 (333)
T ss_pred hc---EEEeeEEecCCC----CcchHHHHHHHHhcCCCEEEEecccchHHHHHHHHHHcCccc-CCceeccCCCCCHHHH
Confidence 77 355555555533 557888999999999999999888788899999999999742 3456665543322100
Q ss_pred CCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCC
Q 008904 263 KSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSND 340 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 340 (549)
........|++...++.+ ..+..++|.+.|+++++ ..+..++...||++++++.|++++...
T Consensus 230 -----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~yda~~~~~~a~~~ag~~--------- 293 (333)
T cd06332 230 -----PAQGDAAVGVLTALHWAPDLDNPANKRFVAAYKAAYG--RVPSVYAAQGYDAAQLLDAALRAVGGD--------- 293 (333)
T ss_pred -----HhhchhhcCeeeeeccCCCCCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHhcCC---------
Confidence 122345677777666544 35778999999999987 346778889999999999999986211
Q ss_pred ccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCC
Q 008904 341 TKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLH 391 (549)
Q Consensus 341 ~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~ 391 (549)
..++..+.++|++++|+|++|++.|+++|+...
T Consensus 294 ------------------~~~~~~v~~al~~~~~~~~~g~i~f~~~~~~~~ 326 (333)
T cd06332 294 ------------------LSDKDALRAALRAADFDSPRGPFKFNPNHNPIQ 326 (333)
T ss_pred ------------------CCCHHHHHHHHhcCceecCccceeECCCCCccc
Confidence 013678999999999999999999999988543
|
This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea. |
| >PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=237.79 Aligned_cols=315 Identities=15% Similarity=0.112 Sum_probs=226.8
Q ss_pred EEEEEEeccCCCC---chHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcCCCch
Q 008904 27 LNVGAIFSFGTVN---GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGPQSAV 102 (549)
Q Consensus 27 i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~~s~ 102 (549)
|+||+|++++... ......+..+|++|||++||++ |++|+.+++|.++|+....+.+.+|+. ++|.+|||.++|.
T Consensus 1 ikVGiL~S~tG~~a~~e~~~~~~~~lAI~eINa~GGvl-G~~le~v~~Dp~Sd~~~ya~~A~~Li~~d~V~~ifGc~TSa 79 (363)
T PF13433_consen 1 IKVGILHSLTGTMAISERSLLDGALLAIEEINAAGGVL-GRQLEPVIYDPASDPSTYAEKAEKLIREDGVRAIFGCYTSA 79 (363)
T ss_dssp --EEEE--SSSTTHHHHHHHHHHHHHHHHHHHCTTTBT-TB--EEEEE--TT-HHHHHHHHHHHHHHS---EEEE--SHH
T ss_pred CeEEEEEeCCCchHhhhHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEECCCCCHHHHHHHHHHHHHhCCccEEEecchhh
Confidence 6899999998654 3466899999999999999997 899999999999999999999999986 5999999999999
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCC--CCCCceEEccCCcHHHHHHHHHH-HHHcCCcEEEEEEecCCcccchHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAEM-VSYFGWGEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~~-l~~~~W~~v~ii~~~~~~g~~~~~~l 179 (549)
+-.++.++.+.++-+++.+. .-+ ...|+++-+......+...++++ +.++|-+++.+|.+|..|++..-.-+
T Consensus 80 sRKaVlPvvE~~~~LL~Yp~-----~YEG~E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lvGSdYv~pre~Nri~ 154 (363)
T PF13433_consen 80 SRKAVLPVVERHNALLFYPT-----QYEGFECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLVGSDYVYPRESNRII 154 (363)
T ss_dssp HHHHHHHHHHHCT-EEEE-S-------------TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCceEEecc-----ccccccCCCceEEcCCCchhhHHHHHHHHHhccCCceEEEecCCccchHHHHHHH
Confidence 99999999999999998742 222 34589999987777777777776 56788899999999999999999999
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc-c
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS-T 258 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~-~ 258 (549)
++.+++.|++|.....+|.+ .+++..++++|++.++++|+-...++....|+++.++.|+... .+-|.+.... .
T Consensus 155 r~~l~~~GgevvgE~Y~plg----~td~~~ii~~I~~~~Pd~V~stlvG~s~~aF~r~~~~aG~~~~-~~Pi~S~~~~E~ 229 (363)
T PF13433_consen 155 RDLLEARGGEVVGERYLPLG----ATDFDPIIAEIKAAKPDFVFSTLVGDSNVAFYRAYAAAGLDPE-RIPIASLSTSEA 229 (363)
T ss_dssp HHHHHHTT-EEEEEEEE-S-----HHHHHHHHHHHHHHT-SEEEEE--TTCHHHHHHHHHHHH-SSS----EEESS--HH
T ss_pred HHHHHHcCCEEEEEEEecCC----chhHHHHHHHHHhhCCCEEEEeCcCCcHHHHHHHHHHcCCCcc-cCeEEEEecCHH
Confidence 99999999999999999966 7999999999999999999999999999999999999998744 4555554322 2
Q ss_pred ccCCCCcCChhhHhhccceEEEeEec--CCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcc
Q 008904 259 FIDSKSPLSLKTAKSILGALTLRQHT--PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (549)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 336 (549)
.... ...+...|.+....+- -++|..++|+++|+++|+.+..++.....+|.+|+++|+|++++..
T Consensus 230 E~~~------~g~~~~~Gh~~~~~YFqsidtp~N~~Fv~~~~~~~g~~~v~s~~~eaaY~~v~l~a~Av~~ags------ 297 (363)
T PF13433_consen 230 ELAA------MGAEAAAGHYTSAPYFQSIDTPENQAFVARFRARYGDDRVTSDPMEAAYFQVHLWAQAVEKAGS------ 297 (363)
T ss_dssp HHTT------S-HHHHTT-EEEES--TT-SSHHHHHHHHHHHTTS-TT----HHHHHHHHHHHHHHHHHHHHTS------
T ss_pred HHhh------cChhhcCCcEEeehhhhhCCcHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHhCC------
Confidence 2211 1124677888776643 3578999999999999987667777888899999999999999721
Q ss_pred ccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCC
Q 008904 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDR 387 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g 387 (549)
. +...++++|.+.+|+...|.|++|+..
T Consensus 298 ----------------------~-d~~~vr~al~g~~~~aP~G~v~id~~n 325 (363)
T PF13433_consen 298 ----------------------D-DPEAVREALAGQSFDAPQGRVRIDPDN 325 (363)
T ss_dssp -------------------------HHHHHHHHTT--EEETTEEEEE-TTT
T ss_pred ----------------------C-CHHHHHHHhcCCeecCCCcceEEcCCC
Confidence 1 488999999999999999999999843
|
|
| >cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=247.37 Aligned_cols=327 Identities=12% Similarity=0.089 Sum_probs=250.8
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCC--ceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCc
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGG--RKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSA 101 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g--~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s 101 (549)
+||.+.|++ +..|.....++++++++||..+++ .| ++|+++++|++++|..+++.+.+|+++ +|.+|||+.+|
T Consensus 1 kIG~~~~lSG~~a~~G~~~~~~~~~~~~~in~g~~i-~G~~~~i~lv~~D~~~~p~~a~~~a~~li~~d~v~~iiG~~~s 79 (357)
T cd06337 1 KIGYVSPRTGPLAAFGEADPWVLETMRSALADGLVV-GGSTYEVEIIVRDSQSNPNRAGLVAQELILTDKVDLLLAGGTP 79 (357)
T ss_pred CcceeccCcCcccccccchHHHHHHHHHHhcCCeeE-CCceeEEEEEEecCCCCHHHHHHHHHHHHhccCccEEEecCCc
Confidence 589999998 455777888999999999955444 35 589999999999999999999999987 99999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCC------C-CCCCCceEEccCCcHHHHHHHHHHHHHcC-CcEEEEEEecCCccc
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTL------S-PLQYPFFVQTAPNDLYLMSAIAEMVSYFG-WGEVIAIFNDDDQGR 173 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~l------s-~~~~~~~~r~~ps~~~~~~ai~~~l~~~~-W~~v~ii~~~~~~g~ 173 (549)
..+.+++++++..+||+|++.+..+.+ . ...++|+||+.+++..+..+++++++..+ ++++++++.++.||.
T Consensus 80 ~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~k~v~ii~~~~~~g~ 159 (357)
T cd06337 80 DTTNPVSDQCEANGVPCISTMAPWQAWFFGRGGNPATGFKWTYHFFWGAEDVVATYVGMWKQLETNKKVGILYPNDPDGN 159 (357)
T ss_pred chhhHHHHHHHHhCCCeEEeccchhhhhccCCCCcccCCceeEEecCCHHHHHHHHHHHHHhCCCCceEEEEeecCchhH
Confidence 999999999999999999864432111 1 12378999999988888889998888888 999999999999998
Q ss_pred chHHHHH---HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEE
Q 008904 174 NGVTALG---DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 250 (549)
Q Consensus 174 ~~~~~l~---~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~ 250 (549)
...+.+. +.+++.|++++....++++ .+|+..++.+|+++++++|++.+.+.++..++++++++|+..+ +
T Consensus 160 ~~~~~~~~~~~~~~~~G~~vv~~~~~~~~----~~D~~~~v~~ik~a~pD~v~~~~~~~~~~~~~~~~~~~G~~~~---~ 232 (357)
T cd06337 160 AFADPVIGLPAALADAGYKLVDPGRFEPG----TDDFSSQINAFKREGVDIVTGFAIPPDFATFWRQAAQAGFKPK---I 232 (357)
T ss_pred HHHHhhhcccHHHHhCCcEEecccccCCC----CCcHHHHHHHHHhcCCCEEEeCCCccHHHHHHHHHHHCCCCCC---e
Confidence 7666554 5667789999988888865 7789999999999999999999999999999999999997543 2
Q ss_pred EEe-CCc-ccccCCCCcCChhhHhhccceEEEeEecCC--------ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHH
Q 008904 251 IAT-TWL-STFIDSKSPLSLKTAKSILGALTLRQHTPD--------SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWM 320 (549)
Q Consensus 251 i~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~ 320 (549)
+.. ... .... . ........|++....+.+. .+..++|.++|+++++ ..+.....+.|+++++
T Consensus 233 ~~~~~~~~~~~~-~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g--~~~~~~~~~~~~~~~~ 304 (357)
T cd06337 233 VTIAKALLFPED-V-----EALGDRGDGMSTEVWWSPSHPFRSSLTGQSAAELADAYEAATG--RQWTQPLGYAHALFEV 304 (357)
T ss_pred EEEeccccCHHH-H-----HHhhhhhcCccccceeccCCCcccccCCccHHHHHHHHHHHhC--CCccCcchHHHHHHHH
Confidence 322 111 1110 0 1112234565544333222 2347899999999886 3345556778999999
Q ss_pred HHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEe
Q 008904 321 IARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI 400 (549)
Q Consensus 321 ~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~ 400 (549)
++.|++++... .++..|.++|++++|+++.|++.|+++ . ..+..|+.+.
T Consensus 305 l~~Ai~~Ags~----------------------------~d~~~v~~aL~~~~~~~~~G~~~f~~~--~-~~~~~~~~~~ 353 (357)
T cd06337 305 GVKALVRADDP----------------------------DDPAAVADAIATLKLDTVVGPVDFGNS--P-IKNVAKTPLV 353 (357)
T ss_pred HHHHHHHcCCC----------------------------CCHHHHHHHHHcCCcccceeeeecCCC--C-Cccccccccc
Confidence 99999985211 137789999999999999999999875 2 2344555554
Q ss_pred e
Q 008904 401 E 401 (549)
Q Consensus 401 ~ 401 (549)
+
T Consensus 354 ~ 354 (357)
T cd06337 354 G 354 (357)
T ss_pred c
Confidence 4
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=241.29 Aligned_cols=224 Identities=30% Similarity=0.501 Sum_probs=202.6
Q ss_pred EEEEEeccCC-----CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-----cCcEEEEc
Q 008904 28 NVGAIFSFGT-----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-----TDTLAIVG 97 (549)
Q Consensus 28 ~IG~l~~~~~-----~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-----~~v~aiiG 97 (549)
+||++|+.+. ..+.....++.+|++++|.. ++|++|++.+.|+++++..+...+.+++. +++.+|||
T Consensus 1 ~iG~~f~~~~~~~~~~~~~~~~~~~~~~~~~~n~~---~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~aiiG 77 (298)
T cd06269 1 RIGGLFPLHSGGRFGEEGAFRAAAALFAVEEINND---LPNTTLGYEIYDSCCSPSDAFSAALDLCSLLEKSRGVVAVIG 77 (298)
T ss_pred CEEEEeecccccccCHHHHHHHHHHHHHHHHHhcc---CCCCeeeeEEEecCCChHHHHHHHHHHHhcCCCCCceEEEEC
Confidence 4899999874 23456688999999999998 57999999999999988888888888876 48999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchH
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
|.++..+.+++++++.+++|+|+++++++.+++ ..+|+++|+.|++..+++++++++++++|++|+++|++++++....
T Consensus 78 ~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~~~~~~~~~~~ 157 (298)
T cd06269 78 PSSSSSAEAVASLLGALHIPQISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYGRRLL 157 (298)
T ss_pred CCCchHHHHHHHHhccCCCcEEecccCchhhcChhhCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHH
Confidence 999999999999999999999999988888887 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+.+.+++.|+++.....++.. ..++...++++++.++++||+++..+.+..+++++.++||. .+++||+++.|
T Consensus 158 ~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~l~~l~~~~~~viv~~~~~~~~~~~l~~a~~~g~~-~~~~~i~~~~~ 232 (298)
T cd06269 158 ELLEEELEKNGICVAFVESIPDG----SEDIRRLLKELKSSTARVIVVFSSEEDALRLLEEAVELGMM-TGYHWIITDLW 232 (298)
T ss_pred HHHHHHHHHCCeeEEEEEEcCCC----HHHHHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHcCCC-CCeEEEEEChh
Confidence 99999999999999988877744 47899999999999999999999999999999999999998 89999999987
Q ss_pred ccc
Q 008904 257 STF 259 (549)
Q Consensus 257 ~~~ 259 (549)
...
T Consensus 233 ~~~ 235 (298)
T cd06269 233 LTS 235 (298)
T ss_pred hcc
Confidence 643
|
This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va |
| >cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=236.63 Aligned_cols=318 Identities=14% Similarity=0.155 Sum_probs=251.6
Q ss_pred EEEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCch
Q 008904 27 LNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAV 102 (549)
Q Consensus 27 i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~ 102 (549)
|+||++.|++. ..|.....++++|+++||+.+++ .|++|++...|+++++..+.+.+.+++++ +|.+|||+.++.
T Consensus 1 i~IG~~~~lsG~~a~~g~~~~~~~~~a~~~iN~~ggi-~G~~v~l~~~D~~~d~~~~~~~~~~l~~~~~v~avig~~~s~ 79 (336)
T cd06326 1 IVLGQSAPLSGPAAALGRAYRAGAQAYFDAVNAAGGV-NGRKIELVTLDDGYEPERTVANTRKLIEDDKVFALFGYVGTP 79 (336)
T ss_pred CEEEEeccCCCcchhhHHHHHHHHHHHHHHHHhcCCc-CCceEEEEEeCCCCChHHHHHHHHHHHhhcCcEEEEeCCCch
Confidence 68999999984 44677899999999999999988 59999999999999999999999999986 999999998888
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
.+.++..++...++|+|++++.++.++....+++||+.++....+..+++++.+.||+++++|+.++.++....+.+++.
T Consensus 80 ~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~~~~~~~~~~~~~~~~~ 159 (336)
T cd06326 80 TTAAALPLLEEAGVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLGLKRIAVFYQDDAFGKDGLAGVEKA 159 (336)
T ss_pred hHHHHHHHHHHcCCeEEEecCCcHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhCCceEEEEEecCcchHHHHHHHHHH
Confidence 78888899999999999986555544433468999999999999999999999999999999999888999999999999
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (549)
+++.|+++.....++.. ..++...+.++++.++++|++..+...+..++++++++|+.. ...+ ..........
T Consensus 160 ~~~~G~~~~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~~~~G~~~-~~~~--~~~~~~~~~~ 232 (336)
T cd06326 160 LAARGLKPVATASYERN----TADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRALRKAGGGA-QFYN--LSFVGADALA 232 (336)
T ss_pred HHHcCCCeEEEEeecCC----cccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHhcCCCC-cEEE--EeccCHHHHH
Confidence 99999988776666643 567889999999888999999888888999999999999853 2222 2221111000
Q ss_pred CCcCChhhHhhccceEEEeE----ecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcccc
Q 008904 263 KSPLSLKTAKSILGALTLRQ----HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 338 (549)
........|++.... .....+..++|.+.|+++++. ..++.+....||+++++++|++++.. .
T Consensus 233 -----~~~g~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~y~~~~~~~~a~~~~g~---~---- 299 (336)
T cd06326 233 -----RLLGEYARGVIVTQVVPNPWSRTLPIVREYQAAMKAYGPG-APPSYVSLEGYIAAKVLVEALRRAGP---D---- 299 (336)
T ss_pred -----HHhhhhhcceEEEEEecCccccCCHHHHHHHHHHHhhCCC-CCCCeeeehhHHHHHHHHHHHHHcCC---C----
Confidence 112234566654322 122356788999999988752 35667788899999999999997421 0
Q ss_pred CCccccCCCCCccccCCccccCchHHHHHHHHhcccc-ccceeeEEccC
Q 008904 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMT-GLSGPIHFNQD 386 (549)
Q Consensus 339 ~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~-g~tG~v~fd~~ 386 (549)
- ++..+.++|++++.. +..+.+.|++.
T Consensus 300 --------------------~-~~~~v~~al~~~~~~~~~g~~~~~~~~ 327 (336)
T cd06326 300 --------------------P-TRESLLAALEAMGKFDLGGFRLDFSPG 327 (336)
T ss_pred --------------------C-CHHHHHHHHHhcCCCCCCCeEEecCcc
Confidence 0 378999999998864 44448999763
|
The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however. |
| >cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=240.76 Aligned_cols=302 Identities=15% Similarity=0.129 Sum_probs=238.3
Q ss_pred EEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHH
Q 008904 28 NVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 104 (549)
+||+++|++.. .|.....++++|++++| |++++++++|+.+ +..+++.+.+++.++|.+||||.+|..+
T Consensus 1 kIG~l~plsG~~a~~g~~~~~g~~lA~~~in-------G~~i~l~~~D~~~-~~~a~~~~~~li~~~V~~iiG~~~s~~~ 72 (336)
T cd06339 1 RIALLLPLSGPLASVGQAIRNGFLAALYDLN-------GASIELRVYDTAG-AAGAAAAARQAVAEGADIIVGPLLKENV 72 (336)
T ss_pred CeEEEEcCCCcchHHHHHHHHHHHHHHHhcc-------CCCceEEEEeCCC-cccHHHHHHHHHHcCCCEEEccCCHHHH
Confidence 58999999854 57778999999999999 6889999999999 9999999999998899999999999999
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHh
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLA 184 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~ 184 (549)
.++++++...++|+|++++..+ +.. .+++||+.+++..++.++++++...+++++++++.++.||....+.|.+.++
T Consensus 73 ~a~~~~~~~~~ip~i~~~~~~~-~~~--~~~~f~~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~f~~~~~ 149 (336)
T cd06339 73 AALAAAAAELGVPVLALNNDES-VAA--GPNLFYFGLSPEDEARRAAEYARSQGKRRPLVLAPDGAYGQRVADAFRQAWQ 149 (336)
T ss_pred HHHHhhhccCCCCEEEccCCcc-ccC--CCCEEEecCChHHHHHHHHHHHHhcCccceEEEecCChHHHHHHHHHHHHHH
Confidence 9999999999999999754433 222 5889999999999999999999888999999999999999999999999999
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC---------------------CCeEEEEEcchH-HHHHHHHHHHHcC
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMM---------------------EARVIVVHGYSR-TGLMVFDVAQRLG 242 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---------------------~~~viil~~~~~-~~~~il~~a~~~g 242 (549)
+.|++|+....++.+ ..++..++.+|+.. +++.|++.+.+. .+..+.+++...+
T Consensus 150 ~~G~~vv~~~~~~~~----~~d~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~ 225 (336)
T cd06339 150 QLGGTVVAIESYDPS----PTDLSDAIRRLLGVDDSEQRIAQLKSLESEPRRRQDIDAIDAVALPDGEARLIKPQLLFYY 225 (336)
T ss_pred HcCCceeeeEecCCC----HHHHHHHHHHHhccccchhhhhhhhhcccCccccCCCCcEEEEecChhhhhhhcchhhhhc
Confidence 999999988888755 78999999999987 899999887776 6666766766554
Q ss_pred CCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCC-CchhhhHhHHHHHH
Q 008904 243 MMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGL-NPYGLYAYDTVWMI 321 (549)
Q Consensus 243 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~yDav~~~ 321 (549)
....+-.+++++.+...... ........|++..... .....+|.+.|+++++ ..| ..+++..|||+.++
T Consensus 226 ~~~~~~~~~g~~~~~~~~~~-----~~~g~~~~g~~~~~~~---~~~~~~f~~~y~~~~~--~~p~~~~~a~~YDa~~l~ 295 (336)
T cd06339 226 GVPGDVPLYGTSRWYSGTPA-----PLRDPDLNGAWFADPP---WLLDANFELRYRAAYG--WPPLSRLAALGYDAYALA 295 (336)
T ss_pred cCcCCCCEEEeccccCCCCC-----cccCcccCCcEEeCCC---cccCcchhhhHHHHhc--CCCCchHHHHHHhHHHHH
Confidence 31123456777665543111 1112345666544431 1123478889998886 456 78899999999998
Q ss_pred HHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHH-hccccccceeeEEccCCCC
Q 008904 322 ARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANIL-QTNMTGLSGPIHFNQDRSL 389 (549)
Q Consensus 322 a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~-~~~f~g~tG~v~fd~~g~r 389 (549)
+.++++... .. ++. ...|+|++|+++|+++|+.
T Consensus 296 ~~~~~~~~~------------------------------~~-----al~~~~~~~g~~G~~~f~~~g~~ 329 (336)
T cd06339 296 AALAQLGQG------------------------------DA-----ALTPGAGFSGVTGVLRLDPDGVI 329 (336)
T ss_pred HHHHHcccc------------------------------cc-----ccCCCCccccCcceEEECCCCeE
Confidence 877665210 01 333 3469999999999999874
|
This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT). |
| >cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=223.08 Aligned_cols=324 Identities=14% Similarity=0.180 Sum_probs=242.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCceEEE----------EEecCCC--ChHHHHHHHHHHHhc--CcEEEEcCCCchHHHH
Q 008904 41 QVSRIAMKAAQDDINSDPRVLGGRKLSI----------TMHDAKF--NGFLSIMGALQFMET--DTLAIVGPQSAVMAHV 106 (549)
Q Consensus 41 ~~~~~a~~~Av~~iN~~~~il~g~~l~~----------~~~d~~~--~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~~~ 106 (549)
...+.|++.|++.+++.. ..+|..+.+ ++.+..| +.-++++...+|... .-.+++||.|..++.+
T Consensus 18 ~~v~~av~~a~~~~~~~~-~~~g~~f~~~a~~~~~~~~~y~~~~C~sstceg~~~l~~l~~~~~~gcv~lGP~CtYat~~ 96 (380)
T cd06369 18 KFVKEAVEEAIEIVAERL-AEAGLNVTVNANFEGFNTSLYRSRGCRSSTCEGVELLKKLSVTGRLGCVLLGPSCTYATFQ 96 (380)
T ss_pred HHHHHHHHHHHHHHHhhh-hccCceEEEEEeeeccccceeccCCCCcccchHHHHHHHHHhcCccCcEEEcCccceehhh
Confidence 356889999999887754 335777776 5555544 445777887888765 6789999999999999
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH------HHcCCcEEEEEEecCCcccch---HH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV------SYFGWGEVIAIFNDDDQGRNG---VT 177 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l------~~~~W~~v~ii~~~~~~g~~~---~~ 177 (549)
++.+...|++|+||-++.. ++-..++++.|+.|+...++..+.++. ++++|+++. ||.++...++. +.
T Consensus 97 ~~~~~~~~~~P~ISaGsfg--lscd~k~~LTR~~pparK~~~~~~~f~~~~~~~~~~~W~~ay-vyk~~~~~edCf~~i~ 173 (380)
T cd06369 97 MVDDEFNLSLPIISAGSFG--LSCDYKENLTRLLPPARKISDFFVDFWKEKNFPKKPKWETAY-VYKKQENTEDCFWYIN 173 (380)
T ss_pred hhhhhhcCCCceEeccccc--cCCCchhhhhhcCchHHHHHHHHHHHHhcccccCCCCCceeE-EEcCCCCccceeeEhH
Confidence 9999999999999976644 343345689999999999999999999 489998665 99877544443 34
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (549)
.+....+..+..+.+...+. ..+++...+++.+ .++||||+++++.+.++++.+ ++...+|++|..+...
T Consensus 174 al~a~~~~f~~~~~~~~~l~-----~~~~~~~il~~~~-~~sRIiImCG~p~~ir~lm~~----~~~~gDYVf~~IDlF~ 243 (380)
T cd06369 174 ALEAGVAYFSSALKFKELLR-----TEEELQKLLTDKN-RKSNVIIMCGTPEDIVNLKGD----RAVAEDIVIILIDLFN 243 (380)
T ss_pred hhhhhhhhhhhcccceeeec-----CchhHHHHHHHhc-cCccEEEEeCCHHHHHHHHhc----CccCCCEEEEEEeccc
Confidence 44444444444444333332 2467888888876 567999999999999999886 3445799999998765
Q ss_pred cccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCC-chhhhHhHHHHHHHHHHHHHHhcCCCcc
Q 008904 258 TFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLN-PYGLYAYDTVWMIARALKLFLDQGNTIS 336 (549)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~yDav~~~a~Al~~~~~~~~~~~ 336 (549)
..... +.....+++.++.+++..|+.+.++++ ..++ .... .+++..||||+++|+||+++++.+++.
T Consensus 244 ~sy~~----d~~a~~amqsVLvIT~~~p~~~~~~~~-----~~fn--~~l~~~~aa~fyDaVLLYa~AL~EtL~~G~~~- 311 (380)
T cd06369 244 DVYYE----NTTSPPYMRNVLVLTLPPRNSTNNSSF-----TTDN--SLLKDDYVAAYHDGVLLFGHVLKKFLESQEGV- 311 (380)
T ss_pred chhcc----CcchHHHHhceEEEecCCCCCcccccC-----CCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-
Confidence 44321 123456789999998877766554431 1121 2222 788999999999999999999876541
Q ss_pred ccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEe-eCceeeEEeEeeCCC
Q 008904 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQIGYWSNYS 415 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~-~~~~~~~VG~w~~~~ 415 (549)
.+..+.+.|+|.+|+|++|+|.+|++||| ..+|.++... ..+.++.||.|+...
T Consensus 312 ------------------------~~~~I~~~m~NrTF~GitG~V~IDeNGDR-d~dfsLl~ms~~tg~y~vV~~y~t~~ 366 (380)
T cd06369 312 ------------------------QTFSFINEFRNISFEGAGGPYTLDEYGDR-DVNFTLLYTSTDTSKYKVLFEFDTST 366 (380)
T ss_pred ------------------------CcHHHHHHHhCcceecCCCceEeCCCCCc-cCceEEEEeeCCCCCeEEEEEEECCC
Confidence 14789999999999999999999999998 7999999886 345559999998754
|
Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion. |
| >cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=228.37 Aligned_cols=280 Identities=23% Similarity=0.349 Sum_probs=231.9
Q ss_pred EEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++. ..|.....++++|++++|+++++ +|+++++++.|+++++..+.+.+.+++.+ +|.+|||+.++..
T Consensus 1 ~IG~i~p~~g~~~~~~~~~~~~~~~a~~~~n~~~g~-~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~~ 79 (299)
T cd04509 1 KIGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKGGI-PGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGV 79 (299)
T ss_pred CeeEEEcCCCcchhcCHHHHHHHHHHHHHHHhcCCC-CCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcHH
Confidence 5999999984 46778899999999999999876 69999999999999999999999999998 9999999999988
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
+.+++.++..++||+|++.+..+.+++ ..+|++|++.|+...++..+++++.+++|+++++++.++.++....+.+.+.
T Consensus 80 ~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv~~~~~~~~~~~~~~~~~ 159 (299)
T cd04509 80 ALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDDSYGRGLLEAFKAA 159 (299)
T ss_pred HHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHH
Confidence 888999999999999998877666654 4689999999999999999999999999999999999888888889999999
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (549)
+++.|+++.....++.. .+++...++++++.++++|+++++...+..+++++++.|+. .++.|+..+.+......
T Consensus 160 ~~~~g~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~-~~~~~i~~~~~~~~~~~ 234 (299)
T cd04509 160 FKKKGGTVVGEEYYPLG----TTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQAAEAGLT-GGYPILGITLGLSDVLL 234 (299)
T ss_pred HHHcCCEEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHHHHcCCC-CCCcEEecccccCHHHH
Confidence 99999998876666543 46788899999888889999988889999999999999988 78999998876543211
Q ss_pred CCcCChhhHhhccceEEEeEecCCCh--hHHHHH---HHHHhhcCCCCCCCchhhhHhHHHHH
Q 008904 263 KSPLSLKTAKSILGALTLRQHTPDSK--RRRDFV---SRWNTLSNGSIGLNPYGLYAYDTVWM 320 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~f~---~~~~~~~~~~~~~~~~~~~~yDav~~ 320 (549)
........|.++.....+..+ ..+.|. ..++..++ ..++.++..+||++++
T Consensus 235 -----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~yda~~~ 290 (299)
T cd04509 235 -----EAGGEAAEGVLTGTPYFPGDPPPESFFFVRAAAREKKKYE--DQPDYFAALAYDAVLL 290 (299)
T ss_pred -----HHhHHhhcCcEEeeccCCCCCChHHHHHHhHHHHHHHHhC--CCCChhhhhhcceeee
Confidence 123356778888776554333 233333 33444433 5678889999999988
|
This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th |
| >TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=228.86 Aligned_cols=291 Identities=15% Similarity=0.130 Sum_probs=222.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEe
Q 008904 41 QVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 120 (549)
Q Consensus 41 ~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 120 (549)
....+++++|+++||+.||++ |++|+++..|. ++|..+++.+.++++++|.+|+|+.+|..+.++.+++...++|+|+
T Consensus 11 ~~~~~ga~lAveeiNaaGGv~-G~~ielv~~D~-~~p~~a~~~a~~Li~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~ 88 (347)
T TIGR03863 11 DRGLDGARLAIEDNNTTGRFL-GQTFTLDEVAV-RTPEDLVAALKALLAQGVRFFVLDLPAAALLALADAAKAKGALLFN 88 (347)
T ss_pred chHHHHHHHHHHHHHhhCCcC-CceEEEEEccC-CCHHHHHHHHHHHHHCCCCEEEecCChHHHHHHHHHHHhCCcEEEe
Confidence 467899999999999999997 89999999985 6899999999999988999999999999999999999999999999
Q ss_pred cccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCC
Q 008904 121 FTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD 199 (549)
Q Consensus 121 ~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~ 199 (549)
++++++.++. ..++|+||+.|++..++.++++++...+.+++++|+.+++||....+.+++.+++.|++|+..+.++..
T Consensus 89 ~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~kkvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~ 168 (347)
T TIGR03863 89 AGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRWRRILLIQGPLPADALYADAFRRSAKRFGAKIVAERPFTFS 168 (347)
T ss_pred CCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEEeEEeccC
Confidence 9888888876 457899999999999999999999888999999999999999999999999999999999988877754
Q ss_pred CCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEE
Q 008904 200 QSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALT 279 (549)
Q Consensus 200 ~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 279 (549)
.....+++.......+.+++++|++.....+....+... .++ ... . ....|+..
T Consensus 169 ~~~~~~d~s~~~~~~~~s~pDvv~~~~~~~~~~~~~~~~----------~~~-~~~------~---------~g~~G~~~ 222 (347)
T TIGR03863 169 GDPRRTDQSEVPLFTQGADYDVVVVADEAGEFARYLPYA----------TWL-PRP------V---------AGSAGLVP 222 (347)
T ss_pred CchhhhhcccCceeecCCCCCEEEEecchhhHhhhcccc----------ccc-ccc------c---------ccccCccc
Confidence 111123433222223347899999865543321111000 000 000 0 01112211
Q ss_pred EeE-ecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccc
Q 008904 280 LRQ-HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSI 358 (549)
Q Consensus 280 ~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 358 (549)
... +..+.+..++|.++|+++++ ..|...++..||++++++.|++++.+.
T Consensus 223 ~~~~~~~~~~~~~~f~~~f~~~~g--~~p~~~~a~aY~av~~~a~Ai~~AGs~--------------------------- 273 (347)
T TIGR03863 223 TAWHRAWERWGATQLQSRFEKLAG--RPMTELDYAAWLAVRAVGEAVTRTRSA--------------------------- 273 (347)
T ss_pred cccCCcccchhHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHHHHHHhcCC---------------------------
Confidence 111 11233567899999999986 456777888999999999999997321
Q ss_pred cCchHHHHHHHHhccc--cccce-eeEEcc-CCCCC
Q 008904 359 FDGGKKFLANILQTNM--TGLSG-PIHFNQ-DRSLL 390 (549)
Q Consensus 359 ~~~~~~l~~~l~~~~f--~g~tG-~v~fd~-~g~r~ 390 (549)
++..+.++|+++.+ .+..| +++|.+ +|+..
T Consensus 274 --d~~aV~~aL~~~~~~~~~~~g~~~~~R~~Dhq~~ 307 (347)
T TIGR03863 274 --DPATLRDYLLSDEFELAGFKGRPLSFRPWDGQLR 307 (347)
T ss_pred --CHHHHHHHHcCCCceecccCCCcceeeCCCcccc
Confidence 48899999999887 46777 699986 66643
|
Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U. |
| >cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-26 Score=223.47 Aligned_cols=319 Identities=12% Similarity=0.053 Sum_probs=246.6
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++ +..|.....++++|++++|+.+|+. |+++++++.|+.+++..+.+.+.+++++ +|.+|||+.++..
T Consensus 1 ~IGv~~p~sG~~a~~g~~~~~g~~~a~~~~N~~Ggi~-G~~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~~ 79 (341)
T cd06341 1 KIGLLYPDTGVAAVSFPGARAGADAAAGYANAAGGIA-GRPIEYVWCDDQGDPASAAACARDLVEDDKVVAVVGGSSGAG 79 (341)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCcC-CceEEEEEecCCCChhHHHHHHHHHHHhcCceEEEecccccc
Confidence 599999997 3567889999999999999999984 8999999999999999999999999988 9999999998877
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l~~~ 182 (549)
..++ +.+...++|+|++.+.++.+.+ .++.|++.+++..++..+++++...+.+++++|+.++. +|......+++.
T Consensus 80 ~~~~-~~~~~~~ip~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~i~~~~~~~g~~~~~~~~~~ 156 (341)
T cd06341 80 GSAL-PYLAGAGIPVIGGAGTSAWELT--SPNSFPFSGGTPASLTTWGDFAKDQGGTRAVALVTALSAAVSAAAALLARS 156 (341)
T ss_pred hhHH-HHHhhcCCceecCCCCCchhhc--CCCeEEecCCCcchhHHHHHHHHHcCCcEEEEEEeCCcHHHHHHHHHHHHH
Confidence 6666 8888999999998666554443 47788998888889999999999999999999987665 899999999999
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (549)
+++.|+.+.....++.. ..++...+.++++.++++|++......+..++++++++|+..+. +...........
T Consensus 157 ~~~~G~~v~~~~~~~~~----~~d~~~~~~~i~~~~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~---~~~~~~~~~~~~ 229 (341)
T cd06341 157 LAAAGVSVAGIVVITAT----APDPTPQAQQAAAAGADAIITVLDAAVCASVLKAVRAAGLTPKV---VLSGTCYDPALL 229 (341)
T ss_pred HHHcCCccccccccCCC----CCCHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCCCE---EEecCCCCHHHH
Confidence 99999998776655543 56888999999999999999998888999999999999986542 222211111000
Q ss_pred CCcCChhhHhhccceEEEeEecC---CChhHHHHHHHHHhhcCC-CCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcccc
Q 008904 263 KSPLSLKTAKSILGALTLRQHTP---DSKRRRDFVSRWNTLSNG-SIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 338 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 338 (549)
........|++....+.+ ..|..+.|.+.+++.... ...++.++..+||+++++++|++++...
T Consensus 230 -----~~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~yda~~~~~~a~~~ag~~------- 297 (341)
T cd06341 230 -----AAPGPALAGVYIAVFYRPFESGTPAVALYLAAMARYAPQLDPPEQGFALIGYIAADLFLRGLSGAGGC------- 297 (341)
T ss_pred -----HhcCcccCceEEEeeeccccCCCHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCC-------
Confidence 122346778777666544 457777887765543321 1357788999999999999999996211
Q ss_pred CCccccCCCCCccccCCccccCchHH-HHHHHHhcccccccee---eEEccCCCCC
Q 008904 339 NDTKLNGLGGGTLNLGALSIFDGGKK-FLANILQTNMTGLSGP---IHFNQDRSLL 390 (549)
Q Consensus 339 ~~~~~~~~~~~~~~c~~~~~~~~~~~-l~~~l~~~~f~g~tG~---v~fd~~g~r~ 390 (549)
.++.. +.++|++++.....|. +.+..++.+.
T Consensus 298 ---------------------~~~~~~v~~al~~~~~~~~~g~~~~~~~~~~~~~~ 332 (341)
T cd06341 298 ---------------------PTRASQFLRALRAVTDYDAGGLTPPCDGKAGPGRP 332 (341)
T ss_pred ---------------------CChHHHHHHHhhcCCCCCCCCcccCccCccCCCCC
Confidence 02566 9999999986554442 3333444433
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=218.45 Aligned_cols=279 Identities=20% Similarity=0.272 Sum_probs=221.9
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCchH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVM 103 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s~~ 103 (549)
+||+++|++ +..|.....++++|+++||+ +++ +|+++++.+.|+++++..+.+.+.+++.+ +|.+|||+.++..
T Consensus 1 ~IG~~~~lsG~~~~~g~~~~~g~~~a~~~iN~-ggi-~g~~i~l~~~d~~~~~~~a~~~~~~li~~~~v~~vig~~~s~~ 78 (312)
T cd06333 1 KIGAILSLTGPAASLGIPEKKTLELLPDEINA-GGI-GGEKVELIVLDDGSDPTKAVTNARKLIEEDKVDAIIGPSTTPA 78 (312)
T ss_pred CeeEEeecCCcchhhCHHHHHHHHHHHHHHhc-CCc-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCeEEEECCCCCHH
Confidence 599999998 45577889999999999999 887 59999999999999999999999999975 9999999988887
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
+.++.+++...++|+|++.++.+.+. ...+++||+.|++...+..+++++.+.||+++++++.++.++....+.+.+.+
T Consensus 79 ~~~~~~~~~~~~vP~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vail~~~~~~~~~~~~~~~~~~ 157 (312)
T cd06333 79 TMAVAPVAEEAKTPMISLAPAAAIVE-PKRKWVFKTPQNDRLMAEAILADMKKRGVKTVAFIGFSDAYGESGLKELKALA 157 (312)
T ss_pred HHHHHHHHHhcCCCEEEccCCccccC-CCCCcEEEcCCCcHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHH
Confidence 77888899999999999876544332 34578999999999999999999999999999999988888888889999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
++.|+++.....++.. ..++...+.+++..++++|++......+..+++++++.|+..+ ++..+........
T Consensus 158 ~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~~~l~~~g~~~p---~~~~~~~~~~~~~- 229 (312)
T cd06333 158 PKYGIEVVADERYGRT----DTSVTAQLLKIRAARPDAVLIWGSGTPAALPAKNLRERGYKGP---IYQTHGVASPDFL- 229 (312)
T ss_pred HHcCCEEEEEEeeCCC----CcCHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHHHHcCCCCC---EEeecCcCcHHHH-
Confidence 9999998876666544 4567888888888889999998877777889999999987543 3333322111000
Q ss_pred CcCChhhHhhccceEEEeEe------cC----CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHH
Q 008904 264 SPLSLKTAKSILGALTLRQH------TP----DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIA 322 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~------~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a 322 (549)
........|++....+ .| ..+..++|.++|+++++. ..+..+++..||++++++
T Consensus 230 ----~~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~f~~~~~~~~g~-~~~~~~~~~~Yda~~~~~ 293 (312)
T cd06333 230 ----RLAGKAAEGAILPAGPVLVADQLPDSDPQKKVALDFVKAYEAKYGA-GSVSTFGGHAYDALLLLA 293 (312)
T ss_pred ----HHhhHhhcCcEeecccceeeeeCCCCCcchHHHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHH
Confidence 1223456776654321 12 235689999999998862 237778999999999998
|
This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however. |
| >KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=232.59 Aligned_cols=293 Identities=31% Similarity=0.555 Sum_probs=237.1
Q ss_pred HHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChh
Q 008904 210 ELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKR 289 (549)
Q Consensus 210 ~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 289 (549)
.+..++....+++++++.+..+..++.++.++||...+|+|+.++......+.... ....+...+.+....+.+....
T Consensus 5 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~i~t~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~s~~ 82 (656)
T KOG1052|consen 5 LLLKLKAMRTRVFVLHMFPILALAIFSQAEELGMMQFGYVWILTNLLTDALDLDEL--YSLIDVMNGVLGLRGHIPRSEL 82 (656)
T ss_pred HHHHhhccCceEEEEeCCHHHHHHHHHHHHHhCccccCeEEEEEecchhhhccccc--ccchhheeeEEeeccCCCccHH
Confidence 34455557789999999988899999999999999999999999977665544321 2334567788888888888888
Q ss_pred HHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHH
Q 008904 290 RRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANI 369 (549)
Q Consensus 290 ~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l 369 (549)
.++|..+|+.. ......++..+||+++++|.|.++.... . ....+|.....|.++..+.+.+
T Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~a~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~ 144 (656)
T KOG1052|consen 83 LQNFVTRWQTS---NVELLVYALWAYDAIQALARAVESLLNI-G--------------NLSLSCGRNNSWLDALGVFNFG 144 (656)
T ss_pred HHHHHHHHhhc---cccccchhhHHHHHHHHHHHHHHHhhcC-C--------------CCceecCCCCcccchhHHHHHH
Confidence 89999999865 1346677899999999999999998651 1 2245676656777788999988
Q ss_pred Hhccccc---cceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCCCCcccCCcccccCCCCCCCCcccceeeEeCC
Q 008904 370 LQTNMTG---LSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPG 446 (549)
Q Consensus 370 ~~~~f~g---~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~ 446 (549)
+.....+ .+|.+.++.++.+....|+|++..+.+. ..||.|++..| ..|.||+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~~~~~~-~~ig~W~~~~~-----------------------~~i~~~~ 200 (656)
T KOG1052|consen 145 KKLLVVNLSGVTGQFQFFRGGLLEYFKYEILNLNGSGE-RRIGYWYPRGG-----------------------ENISWPG 200 (656)
T ss_pred HhhhhhccccceeEEEecCCCccccceEEEEEecCcCc-eeEEEecCCCC-----------------------ceeeccC
Confidence 8876544 4567888888888899999999998887 77999998753 2678999
Q ss_pred CCcCCCccccccCCCCeEEEeecCcccccccEEe---ecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC----CC
Q 008904 447 GVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFK---VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----KN 519 (549)
Q Consensus 447 ~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~----~~ 519 (549)
.....|..+-.+..+++++|+++...||..+... ..++.+++||||||++++++.|+|+ |+++.++|++ ++
T Consensus 201 ~~~~~~~~~~~~~~~~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~--~~~~~~~~~~g~~~~~ 278 (656)
T KOG1052|consen 201 KDYFVPKGWFFPTNGKPLRVGVVTEPPFVDLVEDLAILNGNDRIEGFEIDLLQALAKRLNFS--YEIIFVPDGSGSRDPN 278 (656)
T ss_pred CcccCcCCccccCCCceEEEEEeccCCceeeeecccccCCCCccceEEehHHHHHHHhCCCc--eEEEEcCCCCCCCCCC
Confidence 9888888877665578999999988787776553 2356799999999999999999999 9999999875 44
Q ss_pred CChHHHHHhHhcCcccEEecceEEeecccC
Q 008904 520 PTYSELINQITTGVSRILTKKVAQLTRVSL 549 (549)
Q Consensus 520 g~~~gl~~~l~~~~~d~~~~~~ti~~~r~~ 549 (549)
|.|+||+++|.+|+||++ +++|||++|+.
T Consensus 279 g~~~g~v~~l~~~~advg-~~~tit~~R~~ 307 (656)
T KOG1052|consen 279 GNWDGLVGQLVDGEADVG-ADITITPERSK 307 (656)
T ss_pred CChhHHHHHHhcCccccc-cceEEeecccc
Confidence 899999999999999999 99999999974
|
|
| >cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=208.09 Aligned_cols=280 Identities=21% Similarity=0.327 Sum_probs=229.9
Q ss_pred EEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHH
Q 008904 28 NVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 104 (549)
+||+++|++ +..|.....+++.|++++|+.+++ +|+++++.++|+++++..+.+.+.+++++++.+||||.++..+
T Consensus 1 ~ig~~~p~sg~~~~~~~~~~~g~~~a~~~~n~~gg~-~g~~v~~~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~~~~~ 79 (298)
T cd06268 1 KIGVLLPLSGPLAALGEPVRNGAELAVEEINAAGGI-LGRKIELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVA 79 (298)
T ss_pred CeeeeecCcCchhhcChhHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhCCceEEEcCCcchhH
Confidence 589999997 456778899999999999999987 5999999999999999999999999999999999999999888
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcC-CcEEEEEEecCCcccchHHHHHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG-WGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~-W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
..+.+.+...+||+|++.+..+.+.+..++++|++.|+...++.++++++...+ |+++++|+.++.++....+.+.+.+
T Consensus 80 ~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~ 159 (298)
T cd06268 80 LAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREAL 159 (298)
T ss_pred HhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhcCCCEEEEEEcCCchhHHHHHHHHHHH
Confidence 889999999999999987766554433578999999999999999999999988 9999999999889989999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
++.|+++.....++.. ..++...+.+++..++++|++.+.+..+..+++++++.|+ +..|+..+.+......
T Consensus 160 ~~~g~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~- 231 (298)
T cd06268 160 KKLGGEVVAEETYPPG----ATDFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQAREAGL---KVPIVGGDGAAAPALL- 231 (298)
T ss_pred HHcCCEEEEEeccCCC----CccHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHHcCC---CCcEEecCccCCHHHH-
Confidence 9999998876666543 4578888999998888999998888889999999999886 4567777655432111
Q ss_pred CcCChhhHhhccceEEEeEecCC--ChhHHHHH-HHHHhhcCCCCCCCchhhhHhHHHHHHH
Q 008904 264 SPLSLKTAKSILGALTLRQHTPD--SKRRRDFV-SRWNTLSNGSIGLNPYGLYAYDTVWMIA 322 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~f~-~~~~~~~~~~~~~~~~~~~~yDav~~~a 322 (549)
........|++...++.+. .+....|. +.|++.++ ..++.++...||++.+++
T Consensus 232 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~~~~~~~ 287 (298)
T cd06268 232 ----ELAGDAAEGVLGTTPYAPDDDDPAAAAFFQKAFKAKYG--RPPDSYAAAAYDAVRLLA 287 (298)
T ss_pred ----HhhhHhhCCcEEeccCCCCCCChhhhHHHHHHHHHHhC--CCcccchHHHHHHHHHHc
Confidence 1123456777777665443 23344454 67777765 567888999999999998
|
Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC |
| >cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-14 Score=134.81 Aligned_cols=216 Identities=20% Similarity=0.309 Sum_probs=171.2
Q ss_pred EEEEEeccC--CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 28 NVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
+||+++|.+ ...+.....+++.|++++ |..+++.+.|+++++....+.+.++..++++++|++.++....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~ 72 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEI--------GRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSAL 72 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHh--------CCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHH
Confidence 589999987 444556677888888776 4678888999999888888888888888999999998887766
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC-CcccchHHHHHHHHh
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-DQGRNGVTALGDKLA 184 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~-~~g~~~~~~l~~~~~ 184 (549)
.+...+...++|+|++....+... .+++++++.|+....++.+++++.+++|+++++++.+. ..+....+.+++.++
T Consensus 73 ~~~~~~~~~~ip~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~ 150 (269)
T cd01391 73 AVVELAAAAGIPVVSLDATAPDLT--GYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALK 150 (269)
T ss_pred HHHHHHHHcCCcEEEecCCCCccC--CCceEEEEcCCcHHHHHHHHHHHHHhCCceEEEEecCCcchhhHHHHHHHHHHH
Confidence 678888999999999876554433 46889999999999999999999999999999999877 566777888888998
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC-CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (549)
+.|+++......+.. ...++....+.+++. ++++|++.++ ..+..+++++.+.|+...++.|+..+.+.
T Consensus 151 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~i~~~~~-~~a~~~~~~~~~~g~~~~~~~ii~~~~~~ 220 (269)
T cd01391 151 KAGIEVVAIEYGDLD---TEKGFQALLQLLKAAPKPDAIFACND-EMAAGALKAAREAGLTPGDISIIGFDGSP 220 (269)
T ss_pred hcCcEEEeccccCCC---ccccHHHHHHHHhcCCCCCEEEEcCc-hHHHHHHHHHHHcCCCCCCCEEEeccccc
Confidence 888776544333322 224667777777766 6788888776 88889999999999875567777776554
|
Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con |
| >PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-16 Score=108.10 Aligned_cols=48 Identities=27% Similarity=0.587 Sum_probs=42.3
Q ss_pred cCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC-----CCCChHHHHHhHhc
Q 008904 482 NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH-----KNPTYSELINQITT 531 (549)
Q Consensus 482 ~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~-----~~g~~~gl~~~l~~ 531 (549)
.++.||+||||||+++||+.|+|+ |+++.++||+ ++|+||||||+|++
T Consensus 13 ~g~~~~eGyciDll~~la~~l~F~--y~i~~~~Dg~yG~~~~~g~W~GmiGeli~ 65 (65)
T PF10613_consen 13 TGNDRYEGYCIDLLEELAEELNFT--YEIYLVPDGKYGSKNPNGSWNGMIGELIR 65 (65)
T ss_dssp BGGGGEESHHHHHHHHHHHHHT-E--EEEEE-TTS--EEBETTSEBEHHHHHHHT
T ss_pred CCCccEEEEHHHHHHHHHHHcCCe--EEEEECCCCCCcCcCCCCcCcCHHHHhcC
Confidence 478899999999999999999999 9999999987 78999999999974
|
It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A .... |
| >PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-10 Score=116.00 Aligned_cols=300 Identities=14% Similarity=0.132 Sum_probs=155.7
Q ss_pred CCceEEEEEEeccCCCC---chHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 008904 23 KPEVLNVGAIFSFGTVN---GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~ 99 (549)
...+-+|++++|+++.. |..++.+|..|. +.. .+.+.++.++|+..++. .....+.+.+|+..||||.
T Consensus 216 ~~~~~~IavLLPlsG~~a~~~~aI~~G~~aA~---~~~----~~~~~~l~~~Dt~~~~~--~~~~~~a~~~ga~~ViGPL 286 (536)
T PF04348_consen 216 PAPPQRIAVLLPLSGRLARAGQAIRDGFLAAY---YAD----ADSRPELRFYDTNADSA--DALYQQAVADGADFVIGPL 286 (536)
T ss_dssp ------EEEEE--SSTTHHHHHHHHHHHHHHH----------TT--S-EEEEETTTS-H--HHHHHHHHHTT--EEE---
T ss_pred cCCccCEEEEeCCCCchhHHHHHHHHHHHHhh---ccc----ccCCCceEEecCCCCCH--HHHHHHHHHcCCCEEEcCC
Confidence 34466899999998654 455677777776 122 13456788889876633 3345566678999999999
Q ss_pred CchHHHHHHHhhhh--cCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHH
Q 008904 100 SAVMAHVLSHLANE--LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 100 ~s~~~~~va~~~~~--~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~ 177 (549)
.-.....++..-.. ..+|++.....+.. . .-+.+|.+.-+....++-+++.+..-|+++..|++.++++|....+
T Consensus 287 ~k~~V~~l~~~~~~~~~~vp~LaLN~~~~~-~--~~~~l~~f~LspEdEA~q~A~~a~~~g~~~alvl~p~~~~g~R~~~ 363 (536)
T PF04348_consen 287 LKSNVEALAQLPQLQAQPVPVLALNQPDNS-Q--APPNLYQFGLSPEDEARQAAQKAFQDGYRRALVLAPQNAWGQRMAE 363 (536)
T ss_dssp SHHHHHHHHH-GG-GGTT-EEEES---TT-------TTEEE----HHHHHHHHHHHHHHTT--S-EEEEESSHHHHHHHH
T ss_pred CHHHHHHHHhcCcccccCCceeeccCCCcc-c--CccceEEEeCCcHHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHH
Confidence 99888877766442 48999987544332 1 1234555555566778999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (549)
.|.+.+++.|..+.....+.. ..++...++.-...+.|.|++...+.+++.+--...-. . ..+--.+.++...
T Consensus 364 aF~~~W~~~gg~~~~~~~~~~-----~~~~~~~i~~r~r~d~D~ifl~a~~~~ar~ikP~l~~~-~-a~~lPvyatS~~~ 436 (536)
T PF04348_consen 364 AFNQQWQALGGQVAEVSYYGS-----PADLQAAIQPRRRQDIDAIFLVANPEQARLIKPQLDFH-F-AGDLPVYATSRSY 436 (536)
T ss_dssp HHHHHHHHHHSS--EEEEESS-----TTHHHHHHHHS--TT--EEEE---HHHHHHHHHHHTT--T--TT-EEEE-GGG-
T ss_pred HHHHHHHHcCCCceeeEecCC-----HHHHHHHHhhcCCCCCCEEEEeCCHHHHHHHhhhcccc-c-CCCCCEEEecccc
Confidence 999999999887766555542 45777777755556789999999998888776555321 1 1222222222211
Q ss_pred cccCCCCcCChhhHhhccceEEEeEe---cCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 258 TFIDSKSPLSLKTAKSILGALTLRQH---TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
... .+......+.|+...... .+..+..+.+...|.... .......+..|||..++.
T Consensus 437 ~g~-----~~~~~~~dL~gv~f~d~Pwll~~~~~~~~~~~~~~~~~~---~~~~RL~AlG~DA~~L~~------------ 496 (536)
T PF04348_consen 437 SGS-----PNPSQDRDLNGVRFSDMPWLLDPNSPLRQQLAALWPNAS---NSLQRLYALGIDAYRLAP------------ 496 (536)
T ss_dssp -HH-----T-HHHHHHTTT-EEEE-GGGG---SHHHHHHH-HHTTT----HHHHHHHHHHHHHHHHHH------------
T ss_pred CCC-----CCcchhhhhcCCEEeccccccCCCchHHHHHHhhccCCc---cHHHHHHHHHHHHHHHHH------------
Confidence 110 012334567888777553 223333444444443211 011122344455544431
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCC
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRS 388 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~ 388 (549)
...-++.+....+.|.||.+++|++|.
T Consensus 497 ---------------------------~l~~l~~~~~~~~~G~TG~L~~~~~g~ 523 (536)
T PF04348_consen 497 ---------------------------RLPQLRQFPGYRLDGLTGQLSLDEDGR 523 (536)
T ss_dssp ---------------------------THHHHHHSTT--EEETTEEEEE-TT-B
T ss_pred ---------------------------HHHHHhhCCCCcccCCceeEEECCCCe
Confidence 111233344557899999999999985
|
; PDB: 3CKM_A. |
| >cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-07 Score=88.50 Aligned_cols=205 Identities=10% Similarity=0.050 Sum_probs=136.6
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
+||+++|.. .........+++.+.++ . |+ ++.+.+...++....+.+.+++.++++++|+.........
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~----~----g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~ 70 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA----A----GY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT 70 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH----c----CC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh
Confidence 589999885 33344555666666655 1 34 4556677777777777777888889999998665544443
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 184 (549)
....+...++|+|.+....+. ..+++++.+.+...+..+++++...+-++++++..+.. ++....+.+.+.++
T Consensus 71 ~~~~l~~~~ip~v~~~~~~~~-----~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 145 (264)
T cd01537 71 IVKLARKAGIPVVLVDRDIPD-----GDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALK 145 (264)
T ss_pred HHHHhhhcCCCEEEeccCCCC-----CcccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 567778889999997654432 24556777788888999999999999999999987544 55566788888888
Q ss_pred hcC-eEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 185 EIR-CKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 185 ~~g-~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.| ..+....... .+..+....+.++.+.+ +++|+.. +...+..+++++.+.|+..++.+-|.
T Consensus 146 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~i~~~-~~~~a~~~~~~~~~~g~~i~~~i~i~ 211 (264)
T cd01537 146 EAGPIEIVLVQEGD----WDAEKGYQAAEELLTAHPDPTAIFAA-NDDMALGALRALREAGLRVPDDISVI 211 (264)
T ss_pred HcCCcChhhhccCC----CCHHHHHHHHHHHHhcCCCCCEEEEc-CcHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 777 3332222222 22445566777776665 4444443 33456668888888887544444444
|
Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem |
| >cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-06 Score=81.11 Aligned_cols=206 Identities=12% Similarity=0.058 Sum_probs=131.8
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC-chHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS-AVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~-s~~~~ 105 (549)
+||+++|.. .........+++.+.++ .|+ ++.+.++..++....+.+.+++.+++.+||+... .....
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~--------~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~ 70 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKE--------LGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALT 70 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHh--------cCc--eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHH
Confidence 589999874 33444556666666666 134 4455666667777777777888889999986433 33333
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC--cccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~--~g~~~~~~l~~ 181 (549)
.....+...++|+|......+. .+.+..+.+++...+..+++.+... |-+++++++.+.. ++....+.|.+
T Consensus 71 ~~~~~l~~~~ip~V~~~~~~~~-----~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~ 145 (267)
T cd01536 71 PALKKANAAGIPVVTVDSDIDG-----GNRLAYVGTDNYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRD 145 (267)
T ss_pred HHHHHHHHCCCcEEEecCCCCc-----cceeEEEecCHHHHHHHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHH
Confidence 3445566789999997543321 1334556677777788888888777 8899999986543 56667788889
Q ss_pred HHhhcC-eEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeE-EEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 182 KLAEIR-CKISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 182 ~~~~~g-~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~v-iil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
.+++.+ .++....... ....+..+.+.++.+..++. +|++++...+..+++++++.|+. .+...+..
T Consensus 146 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~~~~~~l~~~g~~-~~i~ivg~ 214 (267)
T cd01536 146 ALKEYPDIEIVAVQDGN----WDREKALQAMEDLLQANPDIDAIFAANDSMALGAVAALKAAGRK-GDVKIVGV 214 (267)
T ss_pred HHHhCCCcEEEEEecCC----CcHHHHHHHHHHHHHhCCCccEEEEecCCchHHHHHHHHhcCCC-CCceEEec
Confidence 888884 6654332222 12344556667765544433 33344446677788999988875 34333333
|
Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2 |
| >cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.7e-06 Score=79.48 Aligned_cols=200 Identities=14% Similarity=0.067 Sum_probs=129.8
Q ss_pred EEEEEeccCCC-CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc-hHHH
Q 008904 28 NVGAIFSFGTV-NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA-VMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~~~ 105 (549)
|||+++|.... +-.....+++.+.++ .+. .|+++++.+.|+..++....+...+++.+++++||....+ ....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~----~~~-~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~ 75 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKE----LKK-AGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALN 75 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHh----hhc-cCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH
Confidence 58999976432 112233444444433 211 2677888899988888888888888888899999984443 3233
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecC--CcccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD--DQGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~--~~g~~~~~~l~~ 181 (549)
.....+...++|+|...... .. +.+.++.++....+..+++.+... +-+++++|.... ..+....+.+++
T Consensus 76 ~~l~~~~~~~iPvv~~~~~~---~~---~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g~~~ 149 (272)
T cd06300 76 PVIEEACEAGIPVVSFDGTV---TT---PCAYNVNEDQAEFGKQGAEWLVKELGGKGNVLVVRGLAGHPVDEDRYAGAKE 149 (272)
T ss_pred HHHHHHHHCCCeEEEEecCC---CC---CceeEecCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchHHHHHHHHH
Confidence 34455667899999975322 11 345678888888889999888776 788999997432 334456677888
Q ss_pred HHhhcC-eEEEEEEccCCCCCCChhhHHHHHHHHhcCCC--eEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 182 KLAEIR-CKISYKSALPPDQSVTETDVRNELVKVRMMEA--RVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 182 ~~~~~g-~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
.+++.+ +.+......+ .+..+..+.+.++.++.+ ++|+... .. +..+++.+++.|+.
T Consensus 150 a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~i~~~~-d~-A~g~~~al~~~g~~ 209 (272)
T cd06300 150 VLKEYPGIKIVGEVYGD----WDQAVAQKAVADFLASNPDVDGIWTQG-GD-AVGAVQAFEQAGRD 209 (272)
T ss_pred HHHHCCCcEEEeecCCC----CCHHHHHHHHHHHHHhCCCcCEEEecC-CC-cHHHHHHHHHcCCC
Confidence 888877 7665322111 223455666777665544 4433333 33 88899999998874
|
Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail. |
| >cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-06 Score=80.61 Aligned_cols=205 Identities=10% Similarity=0.015 Sum_probs=130.6
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
+||++.|.. ..+......+++.+.++ .|+++. +.+...++....+.+.+++.+++.++|....+.....
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~ 70 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAARE--------AGYSVL--LCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL 70 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH--------cCCEEE--EEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH
Confidence 478899885 33333444555555544 144544 4566677777788888888889999887555544444
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 184 (549)
...+...++|+|......+. +.+..+.++....++.+++.+...|.+++++++.+.. ++....+.+.+.++
T Consensus 71 -~~~~~~~~ipvv~~~~~~~~------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~ 143 (264)
T cd06267 71 -LEELAALGIPVVLVDRPLDG------LGVDSVGIDNRAGAYLAVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALE 143 (264)
T ss_pred -HHHHHHcCCCEEEecccccC------CCCCEEeeccHHHHHHHHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHH
Confidence 56678899999997554321 3345566677778888889988889999999986543 45566677888888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+..+......... .........+.++.... .+.|+. .+...+..+++++++.|+..++.+.|.
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~i~~-~~~~~a~~~~~al~~~g~~~~~~i~i~ 210 (264)
T cd06267 144 EAGIPLDEELIVEGD--FSEESGYEAARELLASGERPTAIFA-ANDLMAIGALRALRELGLRVPEDVSVV 210 (264)
T ss_pred HcCCCCCcceEEecc--cchhhHHHHHHHHHhcCCCCcEEEE-cCcHHHHHHHHHHHHhCCCCCCceEEE
Confidence 877533221112211 12344556666665554 455554 344556678888888887544444443
|
Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain. |
| >PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.8e-08 Score=90.67 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=67.2
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC-CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l-~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
.++|+|++.. .++||......++.+.||++||++++++.| |.++.++++.+ +|...+..|.+|++|++++
T Consensus 37 ~g~l~vg~~~--~~pP~~~~~~~~g~~~G~~vdl~~~ia~~llg~~~~~~~~~~-------~~~~~~~~l~~g~~D~~~~ 107 (259)
T PRK11917 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEIDVAKLLAKSILGDDKKIKLVAV-------NAKTRGPLLDNGSVDAVIA 107 (259)
T ss_pred CCEEEEEECC--CCCCceeeeCCCCceeEeeHHHHHHHHHHhcCCCccEEEEEc-------ChhhHHHHHHCCCccEEEe
Confidence 5789999864 677887654446789999999999999994 76544888888 8899999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
++++|+||+
T Consensus 108 ~~~~t~eR~ 116 (259)
T PRK11917 108 TFTITPERK 116 (259)
T ss_pred cccCChhhh
Confidence 999999996
|
|
| >cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=98.63 E-value=5e-06 Score=79.65 Aligned_cols=201 Identities=16% Similarity=0.132 Sum_probs=129.3
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+||++.+..... +...+.-..+++++.+..+ |.++.+.+.|+..++....+...++.++++.+||+..++. ....
T Consensus 1 ~igv~~~~~~~~---~~~~~~gi~~~~~~~g~~~-g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vd~iI~~~~~~-~~~~ 75 (281)
T cd06325 1 KVGILQLVEHPA---LDAARKGFKDGLKEAGYKE-GKNVKIDYQNAQGDQSNLPTIARKFVADKPDLIVAIATPA-AQAA 75 (281)
T ss_pred CeEEecCCCCcc---hHHHHHHHHHHHHHhCccC-CceEEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCcHH-HHHH
Confidence 589999865433 2333333445666666654 7899999999988888888888888888999999865432 2222
Q ss_pred HHhhhhcCCcEEecccCCCCCCC----CCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC-cccchHHHHH
Q 008904 108 SHLANELQVPLLSFTALDPTLSP----LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRNGVTALG 180 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~----~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~-~g~~~~~~l~ 180 (549)
.....++|+|.++..++.... ...+....+..++...+..+++++... |.+++++++.+.. ++....+.+.
T Consensus 76 --~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~r~~g~~ 153 (281)
T cd06325 76 --ANATKDIPIVFTAVTDPVGAGLVKSLEKPGGNVTGVSDLVPVETQLELLKKLLPDAKTVGVLYNPSEANSVVQVKELK 153 (281)
T ss_pred --HHcCCCCCEEEEecCCccccccccccccCCCceeCeecccchHHHHHHHHHHCCCCcEEEEEeCCCCccHHHHHHHHH
Confidence 245679999987644331110 011111222334455567778888775 9999999986543 5556678888
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
+.+++.|+.+.... .. ...++...++++... +++|++..+ ..+..+++++.+.++
T Consensus 154 ~~~~~~g~~~~~~~-~~-----~~~~~~~~~~~~~~~-~dai~~~~d-~~a~~~~~~~~~~~~ 208 (281)
T cd06325 154 KAAAKLGIEVVEAT-VS-----SSNDVQQAAQSLAGK-VDAIYVPTD-NTVASAMEAVVKVAN 208 (281)
T ss_pred HHHHhCCCEEEEEe-cC-----CHHHHHHHHHHhccc-CCEEEEcCc-hhHHhHHHHHHHHHH
Confidence 88988898776532 11 244566777777643 566665444 456667777777664
|
This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally. |
| >PRK10797 glutamate and aspartate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.4e-08 Score=92.44 Aligned_cols=76 Identities=21% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHH----hCC---CCcCEEEEECCCCCCCCChHHHHHhHhcCc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVR----LLP---YAVPYKFIPYGDGHKNPTYSELINQITTGV 533 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~----~l~---~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~ 533 (549)
.+.|+|++.. .|+||.+.. .++.+.||+|||++++++ +|| ++ ++++++ .|..++..|..|+
T Consensus 39 ~g~L~Vg~~~--~~pP~~f~~-~~g~~~G~didl~~~ia~~l~~~lg~~~~~--~~~v~~-------~~~~~i~~L~~G~ 106 (302)
T PRK10797 39 NGVIVVGHRE--SSVPFSYYD-NQQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIPI-------TSQNRIPLLQNGT 106 (302)
T ss_pred CCeEEEEEcC--CCCCcceEC-CCCCEeeecHHHHHHHHHHHHHhhCCCCce--EEEEEc-------ChHhHHHHHHCCC
Confidence 5779999864 567776654 356799999998888766 454 66 999999 8999999999999
Q ss_pred ccEEecceEEeeccc
Q 008904 534 SRILTKKVAQLTRVS 548 (549)
Q Consensus 534 ~d~~~~~~ti~~~r~ 548 (549)
+||+++++++|++|+
T Consensus 107 ~Di~~~~~~~t~eR~ 121 (302)
T PRK10797 107 FDFECGSTTNNLERQ 121 (302)
T ss_pred ccEEecCCccCcchh
Confidence 999999999999996
|
|
| >cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-05 Score=75.03 Aligned_cols=199 Identities=9% Similarity=0.024 Sum_probs=120.8
Q ss_pred EEEEEecc-CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCCchHHH
Q 008904 28 NVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~-~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~ 105 (549)
+||++.|. +..+-.....+++.+.++ .|+++.+...+...++....+....++.+++.++| .|..+....
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKK--------LGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLV 72 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHH--------hCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhH
Confidence 58999985 332222334445444444 26677776666666776666677778888898854 554444333
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC--cccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~--~g~~~~~~l~~ 181 (549)
.....+...++|+|.+.... .....+ .+.++....++.+++.+... |.++++++..... ......+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~---~~~~~~---~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~ 146 (275)
T cd06320 73 PAVERAKKKGIPVVNVNDKL---IPNATA---FVGTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTE 146 (275)
T ss_pred HHHHHHHHCCCeEEEECCCC---CCccce---EEecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHH
Confidence 44456677899999874321 111112 24667777788888888776 8999999975332 23444577888
Q ss_pred HHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc-chHHHHHHHHHHHHcCCC
Q 008904 182 KLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG-YSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 182 ~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~-~~~~~~~il~~a~~~g~~ 244 (549)
.+++. |+.+....... ....+....++++.+..+++-.+++ +...+..+++.+++.|+.
T Consensus 147 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~ 207 (275)
T cd06320 147 AIKKASGIEVVASQPAD----WDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQ 207 (275)
T ss_pred HHhhCCCcEEEEecCCC----ccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHHhcCCC
Confidence 89888 88765432111 1233444556665544444433444 445566688888888874
|
Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. |
| >PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=88.38 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=66.8
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++++|++.. .|+||....+ ++.+.||.+||++++++.+|.+ ++++.. .|+.++..+..|++|+++++
T Consensus 25 ~~~l~v~~~~--~~pPf~~~~~-~g~~~G~~vdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~g~~Di~~~~ 92 (260)
T PRK15010 25 PETVRIGTDT--TYAPFSSKDA-KGDFVGFDIDLGNEMCKRMQVK--CTWVAS-------DFDALIPSLKAKKIDAIISS 92 (260)
T ss_pred CCeEEEEecC--CcCCceeECC-CCCEEeeeHHHHHHHHHHhCCc--eEEEeC-------CHHHHHHHHHCCCCCEEEec
Confidence 4778888753 5778877543 5789999999999999999999 999988 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 93 ~~~t~eR~ 100 (260)
T PRK15010 93 LSITDKRQ 100 (260)
T ss_pred CcCCHHHH
Confidence 99999996
|
|
| >PRK15007 putative ABC transporter arginine-biding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-07 Score=87.46 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=66.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.+.. .++.++||++|+++++++.+|++ ++++.. .|+.++..|..|++|+++++
T Consensus 20 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 87 (243)
T PRK15007 20 AETIRFATEA--SYPPFESID-ANNQIVGFDVDLAQALCKEIDAT--CTFSNQ-------AFDSLIPSLKFRRVEAVMAG 87 (243)
T ss_pred CCcEEEEeCC--CCCCceeeC-CCCCEEeeeHHHHHHHHHHhCCc--EEEEeC-------CHHHHhHHHhCCCcCEEEEc
Confidence 4679998853 567776654 36789999999999999999999 999888 89999999999999999988
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 88 ~~~~~~r~ 95 (243)
T PRK15007 88 MDITPERE 95 (243)
T ss_pred CccCHHHh
Confidence 99999986
|
|
| >PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-07 Score=88.03 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=65.8
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||...+ .++.+.||++|+++++++.+|.+ ++++.. +|+.++..+.+|++|+++++
T Consensus 25 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~vdi~~~ia~~lg~~--i~~~~~-------pw~~~~~~l~~g~~D~~~~~ 92 (259)
T PRK15437 25 PQNIRIGTDP--TYAPFESKN-SQGELVGFDIDLAKELCKRINTQ--CTFVEN-------PLDALIPSLKAKKIDAIMSS 92 (259)
T ss_pred CCeEEEEeCC--CCCCcceeC-CCCCEEeeeHHHHHHHHHHcCCc--eEEEeC-------CHHHHHHHHHCCCCCEEEec
Confidence 4678888742 466776643 35789999999999999999999 999998 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 93 ~~~t~eR~ 100 (259)
T PRK15437 93 LSITEKRQ 100 (259)
T ss_pred CCCCHHHh
Confidence 99999996
|
|
| >PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-07 Score=86.39 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=65.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++++|++.. .|+||... .++.+.||.+||++++++.+|.+ ++++.. +|++++..|.+|++|+++++
T Consensus 24 ~~~l~v~~~~--~~~P~~~~--~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~G~vDi~~~~ 90 (247)
T PRK09495 24 DKKLVVATDT--AFVPFEFK--QGDKYVGFDIDLWAAIAKELKLD--YTLKPM-------DFSGIIPALQTKNVDLALAG 90 (247)
T ss_pred CCeEEEEeCC--CCCCeeec--CCCceEEEeHHHHHHHHHHhCCc--eEEEeC-------CHHHHHHHHhCCCcCEEEec
Confidence 5788998753 56777653 35678999999999999999999 999888 89999999999999999989
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 91 ~~~t~~R~ 98 (247)
T PRK09495 91 ITITDERK 98 (247)
T ss_pred CccCHHHH
Confidence 99999986
|
|
| >TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-07 Score=87.57 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=57.6
Q ss_pred EEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHH---HhHhcCcccEEecc
Q 008904 464 LRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELI---NQITTGVSRILTKK 540 (549)
Q Consensus 464 ~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~---~~l~~~~~d~~~~~ 540 (549)
|+|++.. .|+||.+.. + .||++||+++||++||++ ++++.. +|++++ ..|.+|++|+++ +
T Consensus 2 l~vg~~~--~~pPf~~~~---~--~Gfdvdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~~~~L~~g~~Dii~-~ 64 (246)
T TIGR03870 2 LRVCAAT--KEAPYSTKD---G--SGFENKIAAALAAAMGRK--VVFVWL-------AKPAIYLVRDGLDKKLCDVVL-G 64 (246)
T ss_pred eEEEeCC--CCCCCccCC---C--CcchHHHHHHHHHHhCCC--eEEEEe-------ccchhhHHHHHHhcCCccEEE-e
Confidence 6787754 677877642 2 799999999999999999 999999 999987 699999999998 5
Q ss_pred eEEeecc
Q 008904 541 VAQLTRV 547 (549)
Q Consensus 541 ~ti~~~r 547 (549)
+++|++|
T Consensus 65 ~~~t~~r 71 (246)
T TIGR03870 65 LDTGDPR 71 (246)
T ss_pred CCCChHH
Confidence 9999888
|
This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in |
| >COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00012 Score=68.00 Aligned_cols=204 Identities=15% Similarity=0.118 Sum_probs=132.9
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCc-eEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGR-KLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~-~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
...+.++||+....+.+.-.....+++-|+.+. |. .+++.+...++++..+...++++..++.++|++-.+
T Consensus 26 ~~~~~~~VaI~~~veHpaLd~~~~G~~~aLk~~--------G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~t 97 (322)
T COG2984 26 AAADQITVAITQFVEHPALDAAREGVKEALKDA--------GYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIAT 97 (322)
T ss_pred ccccceeEEEEEeecchhHHHHHHHHHHHHHhc--------CccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCC
Confidence 456677788888876433334455665555553 23 678888888899999999999999888877777444
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCC--CC--CCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC-ccc
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSP--LQ--YPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGR 173 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~--~~--~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~-~g~ 173 (549)
. .+.++.. .-.++|+|-.+.+++.-.. +. -|----+.-||..-..--++++++. +-++++++|..++ ...
T Consensus 98 p-~Aq~~~s--~~~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~ 174 (322)
T COG2984 98 P-AAQALVS--ATKTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSV 174 (322)
T ss_pred H-HHHHHHH--hcCCCCEEEEccCchhhccCCccccCCCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccH
Confidence 3 3333332 2234999987777653221 11 1212223334444445556666663 7899999998664 677
Q ss_pred chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch---HHHHHHHHHHHHcCC
Q 008904 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS---RTGLMVFDVAQRLGM 243 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~---~~~~~il~~a~~~g~ 243 (549)
...+.+...+++.|++|.... ++ +..+....++.+. .+.++|++.++. .....+++.|.+.+.
T Consensus 175 ~l~eelk~~A~~~Gl~vve~~-v~-----~~ndi~~a~~~l~-g~~d~i~~p~dn~i~s~~~~l~~~a~~~ki 240 (322)
T COG2984 175 SLVEELKKEARKAGLEVVEAA-VT-----SVNDIPRAVQALL-GKVDVIYIPTDNLIVSAIESLLQVANKAKI 240 (322)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-cC-----cccccHHHHHHhc-CCCcEEEEecchHHHHHHHHHHHHHHHhCC
Confidence 788999999999999987543 22 2345556666665 567888887775 345566777776554
|
|
| >PRK10653 D-ribose transporter subunit RbsB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00014 Score=70.28 Aligned_cols=222 Identities=14% Similarity=0.077 Sum_probs=123.9
Q ss_pred CchhHHHHHHHHhhhcccccCCCCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHH
Q 008904 1 MNLWWLVSIFSFCIGTAIQGALKPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFL 79 (549)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~ 79 (549)
|+|+.+++...++- |+........-.||+++|.. .++-.....+++.+.++ .|+++ .+.++..++..
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~--------~G~~~--~~~~~~~d~~~ 70 (295)
T PRK10653 3 MKKLATLVSAVALS--ATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADK--------LGYNL--VVLDSQNNPAK 70 (295)
T ss_pred hHHHHHHHHHHHHH--HhcCCccccCCeEEEEecCCCChHHHHHHHHHHHHHHH--------cCCeE--EEecCCCCHHH
Confidence 55555543333322 23333333456899999853 33223445555555555 24444 34566667766
Q ss_pred HHHHHHHHHhcCcEEEE-cCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-
Q 008904 80 SIMGALQFMETDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF- 157 (549)
Q Consensus 80 a~~~~~~l~~~~v~aii-Gp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~- 157 (549)
..+....++.+++.++| +|..+.........+...++|+|.+.... .+ .+.+..+.+....-+..+++.+...
T Consensus 71 ~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~---~~--~~~~~~V~~D~~~~g~~~~~~l~~~~ 145 (295)
T PRK10653 71 ELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRGA---TK--GEVVSHIASDNVAGGKMAGDFIAKKL 145 (295)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCCEEEEccCC---CC--CceeeEEccChHHHHHHHHHHHHHHh
Confidence 66666677777887444 55544443344566677899999975321 11 1233455666666667777776654
Q ss_pred CCc-EEEEEEecC--CcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEE-EcchHHHHH
Q 008904 158 GWG-EVIAIFNDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV-HGYSRTGLM 233 (549)
Q Consensus 158 ~W~-~v~ii~~~~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil-~~~~~~~~~ 233 (549)
+.+ ++.++..+. .......+.+.+.+++.|+.+.... ... .+..+....+.++.++.++.-.+ +.+...+..
T Consensus 146 ~~~~~i~~~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g 221 (295)
T PRK10653 146 GEGAKVIQLEGIAGTSAARERGEGFKQAVAAHKFNVLASQ--PAD--FDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALG 221 (295)
T ss_pred CCCceEEEEEccCCCccHHHHHHHHHHHHhhCCCEEEEec--CCC--CCHHHHHHHHHHHHHhCCCcCEEEECCChhHHH
Confidence 543 566555322 2234566788889998887764321 111 12233344555555444443333 344455556
Q ss_pred HHHHHHHcCC
Q 008904 234 VFDVAQRLGM 243 (549)
Q Consensus 234 il~~a~~~g~ 243 (549)
+++++++.|+
T Consensus 222 ~l~al~~~G~ 231 (295)
T PRK10653 222 ALRALQTAGK 231 (295)
T ss_pred HHHHHHHcCC
Confidence 8899999886
|
|
| >PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-07 Score=84.87 Aligned_cols=73 Identities=22% Similarity=0.414 Sum_probs=63.1
Q ss_pred EEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceEE
Q 008904 464 LRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVAQ 543 (549)
Q Consensus 464 ~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ti 543 (549)
|||++.. .|+||..... ++...|+++|+++++++.+|++ ++++.. +|+.++..|.+|++|++++++++
T Consensus 1 l~V~~~~--~~~P~~~~~~-~~~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~~~ 68 (225)
T PF00497_consen 1 LRVGVDE--DYPPFSYIDE-DGEPSGIDVDLLRAIAKRLGIK--IEFVPM-------PWSRLLEMLENGKADIIIGGLSI 68 (225)
T ss_dssp EEEEEES--EBTTTBEEET-TSEEESHHHHHHHHHHHHHTCE--EEEEEE-------EGGGHHHHHHTTSSSEEESSEB-
T ss_pred CEEEEcC--CCCCeEEECC-CCCEEEEhHHHHHHHHhhcccc--cceeec-------ccccccccccccccccccccccc
Confidence 5777743 5667766554 6789999999999999999999 999998 99999999999999999999999
Q ss_pred eeccc
Q 008904 544 LTRVS 548 (549)
Q Consensus 544 ~~~r~ 548 (549)
|++|+
T Consensus 69 ~~~r~ 73 (225)
T PF00497_consen 69 TPERA 73 (225)
T ss_dssp BHHHH
T ss_pred ccccc
Confidence 99985
|
The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A .... |
| >cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.5e-05 Score=71.20 Aligned_cols=202 Identities=10% Similarity=0.099 Sum_probs=120.7
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|... .+......++..+.++ .|+.+.+ .++..++....+...+++.++++++|....+.....
T Consensus 1 ~igvv~~~~~~~~~~~~~~~i~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~ 70 (266)
T cd06282 1 TVGVVLPSLANPVFAECVQGIQEEARA--------AGYSLLL--ATTDYDAEREADAVETLLRQRVDGLILTVADAATSP 70 (266)
T ss_pred CeEEEeCCCCcchHHHHHHHHHHHHHH--------CCCEEEE--eeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchH
Confidence 3788888642 2222333444444433 1455554 455566666667777777889999986433322233
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEec---CCcccchHHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND---DDQGRNGVTALGDKL 183 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~---~~~g~~~~~~l~~~~ 183 (549)
....+...++|+|......+ ...+++ .......+..+++++...|.++++++..+ .+++....+.+.+.+
T Consensus 71 ~~~~~~~~~ipvV~~~~~~~----~~~~~v---~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l 143 (266)
T cd06282 71 ALDLLDAERVPYVLAYNDPQ----PGRPSV---SVDNRAAARDVAQALAALGHRRIAMLAGRLAASDRARQRYAGYRAAM 143 (266)
T ss_pred HHHHHhhCCCCEEEEeccCC----CCCCEE---eeCcHHHHHHHHHHHHHcCcccEEEeccccccCchHHHHHHHHHHHH
Confidence 45667788999998743221 123332 35667788889999988899999999743 224555678888888
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHH-hcC-CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKV-RMM-EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-~~~-~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
++.|+.+......+ ....+....+.++ ++. .++.|+. ++...+..+++++++.|+..++.+-+
T Consensus 144 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~~p~di~v 208 (266)
T cd06282 144 RAAGLAPLPPVEIP----FNTAALPSALLALLTAHPAPTAIFC-SNDLLALAVIRALRRLGLRVPDDLSV 208 (266)
T ss_pred HHcCCCCCccccCC----CcHHHHHHHHHHHhcCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 88887543322222 1122233344443 333 3455444 55666778899999998754443433
|
This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding |
| >TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=82.82 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=65.2
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++++|++.. .|+||.... .+++++||++|+++++++.+|++ +++++. +|+.++..|.+|++|++++++
T Consensus 24 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~-------~~~~~~~~l~~G~~D~~~~~~ 91 (250)
T TIGR01096 24 GSVRIGTET--GYPPFESKD-ANGKLVGFDVDLAKALCKRMKAK--CKFVEQ-------NFDGLIPSLKAKKVDAIMATM 91 (250)
T ss_pred CeEEEEECC--CCCCceEEC-CCCCEEeehHHHHHHHHHHhCCe--EEEEeC-------CHHHHHHHHhCCCcCEEEecC
Confidence 689998743 567776643 36789999999999999999999 999998 999999999999999999888
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
+.|++|+
T Consensus 92 ~~~~~r~ 98 (250)
T TIGR01096 92 SITPKRQ 98 (250)
T ss_pred ccCHHHh
Confidence 8888885
|
|
| >COG3107 LppC Putative lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.5e-05 Score=73.26 Aligned_cols=296 Identities=10% Similarity=0.109 Sum_probs=175.0
Q ss_pred CCCceEEEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEc
Q 008904 22 LKPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM-ETDTLAIVG 97 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aiiG 97 (549)
.+..+-+|+.++|++. ..|.....+|..|.. -+.. .++-..++.++|+...+.. .+...+ ..|+..|+|
T Consensus 253 ~~~~~skiALLLPLtG~~a~~a~~IqdGF~aA~~-~~~~---~~~~~~~~~i~dT~~~~l~---~i~aqaqq~G~~~VVG 325 (604)
T COG3107 253 SQASPSKIALLLPLTGQAAVFARTIQDGFLAAKN-APAT---QTAQVAELKIYDTSAQPLD---AILAQAQQDGADFVVG 325 (604)
T ss_pred ccCCchheeEEeccCChhHHHHHHHHHHHHHhcc-Cccc---CCccccceeeccCCcccHH---HHHHHHHhcCCcEEec
Confidence 3456778999999984 345566777776655 1111 1333377888888776654 333333 459999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHH
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~ 177 (549)
|.--.....+..--. ..||++....++. +. ..+.+....-+.+..++..++.+-.-|.+...++...+++|+...+
T Consensus 326 PLlK~nVe~L~~~~q-~~i~vLALN~~~n--~r-~~~~~cyfaLSPEDEa~~AA~~l~~qG~R~plvlvPr~~lG~Rv~~ 401 (604)
T COG3107 326 PLLKPNVEALLASNQ-QPIPVLALNQPEN--SR-NPAQLCYFALSPEDEARDAANHLWDQGKRNPLVLVPRNDLGDRVAN 401 (604)
T ss_pred cccchhHHHHHhCcC-CCCceeeecCCcc--cc-CcccceeeecChhHHHHHHHHHHHHccccCceEEecchHHHHHHHH
Confidence 999887776654333 6788887533221 11 2233333333444567889999999999999999999999999999
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHH-----------------------HHHhcCC-CeEEEEEcchHHHHH
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL-----------------------VKVRMME-ARVIVVHGYSRTGLM 233 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l-----------------------~~l~~~~-~~viil~~~~~~~~~ 233 (549)
.|.+++++.|...+....+.. ..++..-+ ..+++.. .+.|++...+.++..
T Consensus 402 AF~~~Wq~~gg~~v~~~~fg~-----~~~l~~~i~~~a~ir~~~~p~~~~~~~g~~~~p~~~~d~iDaVyivAtp~el~~ 476 (604)
T COG3107 402 AFNQEWQKLGGGTVLQQKFGS-----TSELRQGINDGAGIRLTGLPADLTTTNGLQTPPLDDQDTIDAVYIVATPSELAL 476 (604)
T ss_pred HHHHHHHHhcCCchhHhhcCc-----HHHHHhhcccccceeecCCccchhcccCCCCCCcccccccceEEEEecchhHhH
Confidence 999999998874333222211 11111111 1112222 677888888877776
Q ss_pred HHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeE---ecCCChhHHHHHHHHHhhcCCCCCCCch
Q 008904 234 VFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQ---HTPDSKRRRDFVSRWNTLSNGSIGLNPY 310 (549)
Q Consensus 234 il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 310 (549)
+--...-.+.....-.|-.+...... . ..+....++|+..... ..+..|.++.....|..
T Consensus 477 IKP~ia~~~~~~~~p~yaSSr~~~gT-~-----~P~~~~~m~GiqysdiP~l~~~~~p~~qq~a~~~p~----------- 539 (604)
T COG3107 477 IKPMIAMANGSDSPPLYASSRSSQGT-N-----GPDFRLEMEGIQYSDIPWLAQPNPPLMQQAAAAWPN----------- 539 (604)
T ss_pred HhhHHHhhcCCCCcceeeeccccccC-C-----CccHHHhccCccccCCchhcCCCchHHHHHHHhcCC-----------
Confidence 54444433322221223222211111 0 1233445666554322 24556677777777664
Q ss_pred hhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHH------HHhccccccceeeEEc
Q 008904 311 GLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLAN------ILQTNMTGLSGPIHFN 384 (549)
Q Consensus 311 ~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~------l~~~~f~g~tG~v~fd 384 (549)
-|..+.++|.+++.- .|..+ ..+-.++|+||.++.|
T Consensus 540 ---~~sl~RLyAmGvDAw-----------------------------------rLan~f~elrqV~G~~i~G~TG~Lsad 581 (604)
T COG3107 540 ---DYSLARLYAMGVDAW-----------------------------------RLANHFSELRQVPGYQIDGLTGTLSAD 581 (604)
T ss_pred ---chHHHHHHHhcchHH-----------------------------------HHHHHhHHhhcCCCcccccccceeecC
Confidence 255666777666542 22222 2233578999999999
Q ss_pred cCCC
Q 008904 385 QDRS 388 (549)
Q Consensus 385 ~~g~ 388 (549)
+++.
T Consensus 582 ~~c~ 585 (604)
T COG3107 582 PDCV 585 (604)
T ss_pred CCce
Confidence 9874
|
|
| >cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00021 Score=67.82 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=118.7
Q ss_pred EEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCCchHHHH
Q 008904 29 VGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMAHV 106 (549)
Q Consensus 29 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~~ 106 (549)
||+++|.. ..+......++..+.++ .|+.+ .+.++..++....+...+++.++++++| ++..+.....
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~--------~g~~v--~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~ 71 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKE--------LGYEL--TVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVP 71 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHH--------cCceE--EecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHH
Confidence 78888753 33333445555555555 14444 4556666777667777777788898844 5554443333
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecC--CcccchHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD--DQGRNGVTALGDK 182 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~--~~g~~~~~~l~~~ 182 (549)
....+...++|+|......+. ...+-.+..+....+..+++.+... |-+++++++.+. ..+....+.+.+.
T Consensus 72 ~l~~l~~~~ipvv~~~~~~~~-----~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~ 146 (268)
T cd06323 72 AVKAANEAGIPVFTIDREANG-----GEVVSQIASDNVAGGKMAAEYLVKLLGGKGKVVELQGIPGASAARERGKGFHEV 146 (268)
T ss_pred HHHHHHHCCCcEEEEccCCCC-----CceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHH
Confidence 444456789999997543221 1223345566666778888888776 789999997632 3455566778888
Q ss_pred Hhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeE-EEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 183 LAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 183 ~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~v-iil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
+++. |+.+....... .+..+....+.++.+..++. .|++.+...+..+++++++.|+ .+...++.
T Consensus 147 l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~--~di~iig~ 213 (268)
T cd06323 147 VDKYPGLKVVASQPAD----FDRAKGLNVMENILQAHPDIKGVFAQNDEMALGAIEALKAAGK--DDVKVVGF 213 (268)
T ss_pred HHhCCCcEEEecccCC----CCHHHHHHHHHHHHHHCCCcCEEEEcCCchHHHHHHHHHHcCC--CCcEEEEe
Confidence 8874 77654321111 11223333444544333332 2333444555568888888887 34444443
|
Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability. |
| >cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00014 Score=69.05 Aligned_cols=204 Identities=17% Similarity=0.128 Sum_probs=120.7
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.. ..+......++..++++ .|+.+. +.++..++....+....+++++++++|--.... ...
T Consensus 1 ~i~vv~p~~~~~~~~~~~~~i~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~-~~~ 69 (268)
T cd06273 1 TIGAIVPTLDNAIFARVIQAFQETLAA--------HGYTLL--VASSGYDLDREYAQARKLLERGVDGLALIGLDH-SPA 69 (268)
T ss_pred CeEEEeCCCCCchHHHHHHHHHHHHHH--------CCCEEE--EecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-CHH
Confidence 489999863 22223334444444444 244444 467777777777777788888887766421111 223
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC---CcccchHHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTALGDKL 183 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~---~~g~~~~~~l~~~~ 183 (549)
....+...++|+|......+ ....++ +.......+..+++.+...|.+++++|.... ..+......|.+.+
T Consensus 70 ~~~~l~~~~iPvv~~~~~~~---~~~~~~---v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l 143 (268)
T cd06273 70 LLDLLARRGVPYVATWNYSP---DSPYPC---VGFDNREAGRLAARHLIALGHRRIAMIFGPTQGNDRARARRAGVRAAL 143 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCC---CCCCCE---EEeChHHHHHHHHHHHHHCCCCeEEEEeccccCCccHHHHHHHHHHHH
Confidence 34456778999998754322 112233 3456777888899988888999999997432 23455678888899
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
++.++.+.....+... ....+....+.++.+. .+++|+. ++...+..+++.+++.|+..++.+-+
T Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~~~~a~~~~~~l~~~g~~~p~~i~v 210 (268)
T cd06273 144 AEAGLELPELWQVEAP--YSIADGRAALRQLLEQPPRPTAVIC-GNDVLALGALYEARRLGLSVPEDLSI 210 (268)
T ss_pred HHcCCCCCHHHeeeCC--CcHHHHHHHHHHHHcCCCCCCEEEE-cChHHHHHHHHHHHHcCCCCCCceEE
Confidence 8887543321111111 1122334455555433 3555554 55566777888888888765444433
|
This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational |
| >PRK11260 cystine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.7e-06 Score=80.79 Aligned_cols=76 Identities=13% Similarity=0.258 Sum_probs=65.7
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++++|++.. .|+|+.... +++.+.||.+|+++++++.+|++ ++++.. .|..+...|.+|++|+++++
T Consensus 40 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~lg~~--~e~~~~-------~~~~~~~~l~~G~~D~~~~~ 107 (266)
T PRK11260 40 RGTLLVGLEG--TYPPFSFQG-EDGKLTGFEVEFAEALAKHLGVK--ASLKPT-------KWDGMLASLDSKRIDVVINQ 107 (266)
T ss_pred CCeEEEEeCC--CcCCceEEC-CCCCEEEehHHHHHHHHHHHCCe--EEEEeC-------CHHHHHHHHhcCCCCEEEec
Confidence 5789998743 567776543 46779999999999999999999 999988 89999999999999999988
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++++++|+
T Consensus 108 ~~~~~~r~ 115 (266)
T PRK11260 108 VTISDERK 115 (266)
T ss_pred cccCHHHH
Confidence 99999885
|
|
| >cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00039 Score=66.26 Aligned_cols=201 Identities=14% Similarity=0.143 Sum_probs=115.1
Q ss_pred EEEEEeccC--CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 28 NVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
.||+++|.. ..+......+++.+.++ .|+.+ .+.++..++....+....++.++++++|- +..+...
T Consensus 1 ~i~vi~p~~~~~~~~~~~~~g~~~~~~~--------~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~ 70 (275)
T cd06317 1 TIGYTQNNVGSHSYQTTYNKAFQAAAEE--------DGVEV--IVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAY 70 (275)
T ss_pred CeEEEecccCCCHHHHHHHHHHHHHHHh--------cCCEE--EEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCcccc
Confidence 378888863 33344455666666665 14444 45666667777777777778889998865 4433333
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEc-cCCcHHHHHHHHHHHHHc--CCcEEEEEEecCCc--ccchHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQT-APNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ--GRNGVTAL 179 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~-~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~~--g~~~~~~l 179 (549)
......+...++|+|...... .....++.+.. .+.....+...++.+.+. |-++++++.....+ +....+.+
T Consensus 71 ~~~l~~~~~~~iPvV~~~~~~---~~~~~~~v~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~ 147 (275)
T cd06317 71 IPGLRKAKQAGIPVVITNSNI---SEKGFEFIKSFTGPDDISQGERSAEAMCKALGGKGQIVVIAGQPGNGTAIERQKGF 147 (275)
T ss_pred HHHHHHHHHCCCcEEEeCCCC---CCCccchhhhhccccHHHHHHHHHHHHHHHcCCCceEEEEecCCCCchHHHHHHHH
Confidence 334455677899999864322 12223443222 344555666677776554 66899999754333 33445778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH-hc--CCCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM--MEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-~~--~~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
++.+++.|..+......... ....+....++++ .+ ..++.|+. ++...+..+++++++.|+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~~l~~~g~~ 212 (275)
T cd06317 148 EDELAEVCPGVEVLDTQPAD--WDREKAQVAMEALITKFGDDIDGVYA-GDDNMARGALNAAKEAGLA 212 (275)
T ss_pred HHHHHhhCCCCEEEeccCCC--CCHHHHHHHHHHHHHhCCCCccEEEE-CCCcHHHHHHHHHHhcCCc
Confidence 88888876433222111111 1122222334443 22 23455554 4445577889999998875
|
Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00047 Score=65.81 Aligned_cols=208 Identities=11% Similarity=0.051 Sum_probs=117.9
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCCchHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~~ 106 (549)
+||+++|.... .+...+..++++.=++ .|+++ .+.++..++....+...+++..+++++| ++..+.....
T Consensus 1 ~i~vi~~~~~~---~~~~~~~~~i~~~~~~----~g~~~--~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~ 71 (277)
T cd06319 1 QIAYIVSDLRI---PFWQIMGRGVKSKAKA----LGYDA--VELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVT 71 (277)
T ss_pred CeEEEeCCCCc---hHHHHHHHHHHHHHHh----cCCeE--EEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHH
Confidence 47888886421 2223333333332222 14444 4556667777667777777788888885 5655544445
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc------CCcEEEEEEecC--CcccchHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF------GWGEVIAIFNDD--DQGRNGVTA 178 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~------~W~~v~ii~~~~--~~g~~~~~~ 178 (549)
....+...++|+|.+.... .+ ..++..+.++....+..+++++... |-++++++.... ..+....+.
T Consensus 72 ~l~~~~~~~ipvV~~~~~~---~~--~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~~~~~r~~g 146 (277)
T cd06319 72 LLKLAAQAKIPVVIADIGA---EG--GDYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRKNGQKRTKG 146 (277)
T ss_pred HHHHHHHCCCCEEEEecCC---CC--CceEEEEeeccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCccHHHHHHH
Confidence 5566778899999864321 11 1233445566666566677665543 568999987432 345566788
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEE-EEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIV-VHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vii-l~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
+++.+++.|+.+..... ... .+.......++++.++.++... ++.....+..+++++++.|+. .+...++.
T Consensus 147 f~~~l~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~-~di~vvg~ 218 (277)
T cd06319 147 FKEAMKEAGCDLAGIRQ-QKD--FSYQETFDYTNDLLTANPDIRAIWLQGSDRYQGALDAIATAGKT-GKVLLICF 218 (277)
T ss_pred HHHHHHhcCCceEeecc-CCC--CCHHHHHHHHHHHHHhCCCCCEEEECCCccchHHHHHHHHcCCC-CCEEEEEc
Confidence 88999988876542211 111 1223334455555444444323 333444456788899998975 33333333
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0012 Score=62.75 Aligned_cols=210 Identities=10% Similarity=-0.034 Sum_probs=117.3
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc-hHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA-VMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~~~~ 106 (549)
|||++.|.-. ..+..-+..++++.-++ .|+++.+...+...++....+....++.++++++|-.... .....
T Consensus 1 ~Igvi~~~~~---~~~~~~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~ 73 (273)
T cd06310 1 KIALVPKGTT---SDFWQAVKAGAEAAAKE----LGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVP 73 (273)
T ss_pred CeEEEecCCC---cHHHHHHHHHHHHHHHH----cCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHH
Confidence 6899987632 12222223333332222 2566665543334567666677777888899888863333 22233
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCCc--ccchHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ--GRNGVTALGDK 182 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~~--g~~~~~~l~~~ 182 (549)
....+...++|+|...... .+. ..+-.+.+.....+..+++.+... |.++++++.....+ .....+.+++.
T Consensus 74 ~l~~~~~~~ipvV~~~~~~---~~~--~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~a 148 (273)
T cd06310 74 PLKEAKDAGIPVVLIDSGL---NSD--IAVSFVATDNVAAGKLAAEALAELLGKKGKVAVISFVPGSSTTDQREEGFLEG 148 (273)
T ss_pred HHHHHHHCCCCEEEecCCC---CCC--cceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCccHHHHHHHHHHH
Confidence 3344456899999874321 110 112224455656678888888776 89999999744332 23355777888
Q ss_pred Hhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeE-EEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 183 LAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 183 ~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~v-iil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+++. |+.+.... ... ....+-...+.++.+...++ .|++.+...+..+++.+++.|+. .+...++.+
T Consensus 149 ~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~l~~~g~~-~di~vig~d 217 (273)
T cd06310 149 LKEYPGIEIVATQ-YSD---SDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARAVRQAGKA-GKVKVVGFD 217 (273)
T ss_pred HHhCCCcEEEecc-cCC---cCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHHHHhcCCC-CCeEEEEeC
Confidence 8887 77654311 111 11223334555554333333 33444556677789999998875 444444443
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >PRK10859 membrane-bound lytic transglycosylase F; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4e-06 Score=86.36 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=60.8
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .| +.....+++ ..||.+||++++++.+|++ ++++.. .+|+.++..|.+|++|+++++
T Consensus 42 ~g~LrVg~~~-~P---~~~~~~~~~-~~G~~~DLl~~ia~~LGv~--~e~v~~------~~~~~ll~aL~~G~iDi~~~~ 108 (482)
T PRK10859 42 RGELRVGTIN-SP---LTYYIGNDG-PTGFEYELAKRFADYLGVK--LEIKVR------DNISQLFDALDKGKADLAAAG 108 (482)
T ss_pred CCEEEEEEec-CC---CeeEecCCC-cccHHHHHHHHHHHHhCCc--EEEEec------CCHHHHHHHHhCCCCCEEecc
Confidence 5789999865 23 222222333 4999999999999999999 998844 279999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 109 lt~T~eR~ 116 (482)
T PRK10859 109 LTYTPERL 116 (482)
T ss_pred CcCChhhh
Confidence 99999996
|
|
| >cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0013 Score=62.58 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=121.0
Q ss_pred EEEEEeccC--CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc-hHH
Q 008904 28 NVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA-VMA 104 (549)
Q Consensus 28 ~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~~ 104 (549)
+||++.|.. ..+......+++.+.++ .|+.+.+...+. .++....+...+++..++.++|..... ...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~--------~g~~v~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~ 71 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD--------LGVDVEYRGPET-FDVADMARLIEAAIAAKPDGIVVTIPDPDAL 71 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH--------hCCEEEEECCCC-CCHHHHHHHHHHHHHhCCCEEEEeCCChHHh
Confidence 588888864 33333455666666665 255655443332 267666677777888899988863332 222
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-cCCcEEEEEEecC--CcccchHHHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDD--DQGRNGVTALGD 181 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~~v~ii~~~~--~~g~~~~~~l~~ 181 (549)
......+...++|+|......+... ..+.+..+..+....+..+++.+.+ .|-++++++..+. ..+....+.+.+
T Consensus 72 ~~~l~~~~~~~ipvV~~~~~~~~~~--~~~~~~~V~~d~~~~g~~~~~~l~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~ 149 (271)
T cd06312 72 DPAIKRAVAAGIPVISFNAGDPKYK--ELGALAYVGQDEYAAGEAAGERLAELKGGKNVLCVIHEPGNVTLEDRCAGFAD 149 (271)
T ss_pred HHHHHHHHHCCCeEEEeCCCCCccc--cccceEEeccChHHHHHHHHHHHHHhcCCCeEEEEecCCCCccHHHHHHHHHH
Confidence 3333445678999999753222111 1234566777888899999999988 8999999887432 334556778888
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
.+++.++.+... ... .+.......++++.+.. .+.|+. .+...+..+++.+++.|+.
T Consensus 150 ~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~l~~~~~~~aI~~-~~d~~a~g~~~al~~~g~~ 208 (271)
T cd06312 150 GLGGAGITEEVI---ETG--ADPTEVASRIAAYLRANPDVDAVLT-LGAPSAAPAAKALKQAGLK 208 (271)
T ss_pred HHHhcCceeeEe---ecC--CCHHHHHHHHHHHHHhCCCccEEEE-eCCccchHHHHHHHhcCCC
Confidence 888877654321 111 11223344455543332 344433 4445566778888888875
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00087 Score=63.76 Aligned_cols=208 Identities=14% Similarity=0.012 Sum_probs=119.1
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcC-CCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGP-QSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp-~~s~~~~ 105 (549)
+||+++|.. ..+......+++-+.++ .|+.+. +.++..++....+....++..++++||.. ..+....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~ 70 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEA--------LGGDLR--VYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLK 70 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHH--------cCCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhH
Confidence 478888853 22223344555555444 245544 45667777777777777888899999874 3333333
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH--cCCcEEEEEEecC-CcccchHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFNDD-DQGRNGVTALGDK 182 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~--~~W~~v~ii~~~~-~~g~~~~~~l~~~ 182 (549)
.+...+...++|+|.+....+. +.+..+.++....++.+++.+.. .|.++++++...+ .........+.+.
T Consensus 71 ~~i~~~~~~~ipvV~~~~~~~~------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~g~~~~ 144 (273)
T cd06305 71 PWVKRALDAGIPVVAFDVDSDN------PKVNNTTQDDYSLARLSLDQLVKDLGGKGNVGYVNVAGFPPLDRRYDVWQAV 144 (273)
T ss_pred HHHHHHHHcCCCEEEecCCCCC------CccceeeechHHHHHHHHHHHHHHhCCCCCEEEEEccCCchHHHHHHHHHHH
Confidence 4445567789999987442211 22334556777788888888776 5889999997532 1223344566777
Q ss_pred HhhcC-eEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeE---EEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 183 LAEIR-CKISYKSALPPDQSVTETDVRNELVKVRMMEARV---IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 183 ~~~~g-~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~v---iil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+++.+ +.+......... ....+....++++....+++ .|++.+...+..++..+++.|+.. +...++.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~-di~iig~d 217 (273)
T cd06305 145 LKAYPGIKEVAELGDVSN--NTAQDAAAQVEAVLKKYPKGGIDAIWAAWDEFAKGAKQALDEAGRTD-EIKIYGVD 217 (273)
T ss_pred HHHCCCcEEecccccccc--cchhHHHHHHHHHHHHCCCcccCeEEEcChhhhHHHHHHHHHcCCCC-CceEEEec
Confidence 77766 554332111111 11223334555544333433 333344556677888888888752 33444443
|
Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR. |
| >cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0019 Score=61.46 Aligned_cols=210 Identities=13% Similarity=0.106 Sum_probs=120.1
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCCchHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~~ 106 (549)
+||+++|... ..+...+..++++.-+. . .|+ .+.+.++..++....+....+++.+++++| .|..+.....
T Consensus 1 ~igvi~~~~~---~~~~~~~~~gi~~~~~~--~-~~~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~ 72 (272)
T cd06301 1 KIGVSMANFD---DNFLTLLRNAMKEHAKV--L-GGV--ELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAP 72 (272)
T ss_pred CeeEeecccC---CHHHHHHHHHHHHHHHH--c-CCc--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHH
Confidence 5899998632 12333333333333222 0 134 444566666777777777778888999886 4555444445
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC--cccchHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTALGDK 182 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~--~g~~~~~~l~~~ 182 (549)
+...+...++|+|......+.. .+.+..+..+....+..+++.|... +-++++++..... ......+.|.+.
T Consensus 73 ~~~~l~~~~iPvv~~~~~~~~~----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~ 148 (272)
T cd06301 73 IVKAANAAGIPLVYVNRRPENA----PKGVAYVGSDEVVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKGVEEV 148 (272)
T ss_pred HHHHHHHCCCeEEEecCCCCCC----CCeeEEEecChHHHHHHHHHHHHHHhCCCccEEEEECCCCCccHHHHHHHHHHH
Confidence 5555688899999874322111 1234456677777788888887665 4469998875432 234456778888
Q ss_pred HhhcC-eEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 183 LAEIR-CKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 183 ~~~~g-~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+++.| ..+... .... .........++++.+. .++.| ++.+...+..+++.+++.|....+...++.+
T Consensus 149 l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~~~~~~l~~~g~~~~di~ivg~d 218 (272)
T cd06301 149 LAKYPDIKVVEE--QTAN--WSRAEAMDLMENWLSSGGKIDAV-VANNDEMALGAIMALKAAGKSDKDVPVAGID 218 (272)
T ss_pred HHHCCCcEEEec--CCCC--ccHHHHHHHHHHHHHhCCCCCEE-EECCCchHHHHHHHHHHcCCCCCCcEEEeeC
Confidence 88877 433321 1111 1122223444444322 34543 4445556667888999989763354455443
|
Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. |
| >TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.2e-06 Score=78.71 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=63.7
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++. .|+||.... .++.+.||.+||++++++.+|++. ++++.. +|+.++..|..|++|+++.+
T Consensus 32 ~~~l~v~~~---~~pP~~~~~-~~g~~~G~~~dl~~~i~~~lg~~~-~~~~~~-------~w~~~~~~l~~G~~Di~~~~ 99 (275)
T TIGR02995 32 QGFARIAIA---NEPPFTYVG-ADGKVSGAAPDVARAIFKRLGIAD-VNASIT-------EYGALIPGLQAGRFDAIAAG 99 (275)
T ss_pred CCcEEEEcc---CCCCceeEC-CCCceecchHHHHHHHHHHhCCCc-eeeccC-------CHHHHHHHHHCCCcCEEeec
Confidence 578999875 356776543 356789999999999999999851 567777 99999999999999999989
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 100 ~~~t~eR~ 107 (275)
T TIGR02995 100 LFIKPERC 107 (275)
T ss_pred ccCCHHHH
Confidence 99999996
|
Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes. |
| >cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00077 Score=63.99 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=119.3
Q ss_pred EEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEcCCCchHHHH
Q 008904 29 VGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM-ETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 29 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aiiGp~~s~~~~~ 106 (549)
||+++|.. ..+......+++.+.++ .|+.+.+...+.. .......+.+.+ ..+++++|..........
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~ 71 (270)
T cd01545 2 IGLLYDNPSPGYVSEIQLGALDACRD--------TGYQLVIEPCDSG--SPDLAERVRALLQRSRVDGVILTPPLSDNPE 71 (270)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHHh--------CCCeEEEEeCCCC--chHHHHHHHHHHHHCCCCEEEEeCCCCCccH
Confidence 78899763 44445556676666654 2567766555432 222344555544 568999987543322234
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcc--cchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQG--RNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g--~~~~~~l~~~~~ 184 (549)
....+...++|+|......+. ..+++ +..+....+..+++.+...|.++++++..+..+. ......|.+.++
T Consensus 72 ~~~~~~~~~ipvv~i~~~~~~---~~~~~---V~~d~~~~g~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~ 145 (270)
T cd01545 72 LLDLLDEAGVPYVRIAPGTPD---PDSPC---VRIDDRAAAREMTRHLIDLGHRRIAFIAGPPDHRASAERLEGYRDALA 145 (270)
T ss_pred HHHHHHhcCCCEEEEecCCCC---CCCCe---EEeccHHHHHHHHHHHHHCCCceEEEEeCCCCchhHHHHHHHHHHHHH
Confidence 445566789999987543321 12232 3346666778888888888999999998554332 233566788888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
+.|+.+......... ....+-...++++.+ ..++.|+ +.+...+..+++.+++.|...++ ...++.+
T Consensus 146 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~i~-~~~d~~a~~~~~~~~~~g~~~p~~i~vig~d 215 (270)
T cd01545 146 EAGLPLDPELVAQGD--FTFESGLEAAEALLALPDRPTAIF-ASNDDMAAGVLAVAHRRGLRVPDDLSVVGFD 215 (270)
T ss_pred HcCCCCChhhEEeCC--CChhhHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 777654210001111 111222234444433 3455555 45556777899999998875443 3344443
|
Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind |
| >COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.7e-06 Score=77.41 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=64.5
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.+.++|++.. ..++||.......+.+.||++|+++++++.++.....++... .|++++..|..|++|+++++
T Consensus 33 ~~~~~v~~~~-~~~~p~~~~~~~~~~~~G~dvdl~~~ia~~l~~~~~~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 104 (275)
T COG0834 33 RGKLRVGTEA-TYAPPFEFLDAKGGKLVGFDVDLAKAIAKRLGGDKKVEFVPV-------AWDGLIPALKAGKVDIIIAG 104 (275)
T ss_pred cCeEEEEecC-CCCCCcccccCCCCeEEeeeHHHHHHHHHHhCCcceeEEecc-------chhhhhHHHhcCCcCEEEec
Confidence 4667888764 234466665544358999999999999999888522677787 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|.||.
T Consensus 105 ~~~t~er~ 112 (275)
T COG0834 105 MTITPERK 112 (275)
T ss_pred cccCHHHh
Confidence 99999875
|
|
| >cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0018 Score=61.61 Aligned_cols=210 Identities=12% Similarity=0.052 Sum_probs=119.4
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~ 106 (549)
.||++.|.-. ..+...+...+++.-++. |+++.+ .+...+...-.+....++.++++++|- +........
T Consensus 1 ~~g~~~~~~~---~~~~~~~~~~~~~~a~~~----g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~ 71 (273)
T cd06309 1 TVGFSQVGAE---SPWRTAETKSIKDAAEKR----GFDLKF--ADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDP 71 (273)
T ss_pred CeeeccCCCC---CHHHHHHHHHHHHHHHhc----CCEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchH
Confidence 3788888532 123333333333333321 455444 555556666666677778888888864 433332233
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC--cccchHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTALGDK 182 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~--~g~~~~~~l~~~ 182 (549)
....+...++|+|.+....+.. ...+++.++.+.....+..+++.+... +-++++++..+.. ......+.+.+.
T Consensus 72 ~i~~~~~~~iPvV~~~~~~~~~--~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~ 149 (273)
T cd06309 72 VLKEAKAAGIPVILVDRGVDVK--DDSLYVTFIGSDFVEEGRRAADWLAKATGGKGNIVELQGTVGSSVAIDRKKGFAEV 149 (273)
T ss_pred HHHHHHHCCCCEEEEecCcCCc--cCcceeeEecCChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHH
Confidence 3455677899999975432110 112456778888888888888888776 8889999975432 223446677888
Q ss_pred Hhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcCC---CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 183 LAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMME---ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 183 ~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
+++. +..+.... ... ....+....++++.+.. +++| ++.+...+..+++.+++.|+..++-+.|.+
T Consensus 150 l~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~~aI-~~~~d~~a~g~~~a~~~~g~~ip~di~iig 219 (273)
T cd06309 150 IKKYPNMKIVASQ--TGD--FTRAKGKEVMEALLKAHGDDIDAV-YAHNDEMALGAIQAIKAAGKKPGKDIKIVS 219 (273)
T ss_pred HHHCCCCEEeecc--CCc--ccHHHHHHHHHHHHHhCCCCccEE-EECCcHHHHHHHHHHHHcCCCCCCCeEEEe
Confidence 8876 34443211 111 11233334455544332 3433 334445556688888888886544444443
|
Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally. |
| >PRK10936 TMAO reductase system periplasmic protein TorT; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0052 Score=60.67 Aligned_cols=208 Identities=9% Similarity=-0.019 Sum_probs=114.3
Q ss_pred CceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCc
Q 008904 24 PEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSA 101 (549)
Q Consensus 24 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s 101 (549)
...-+||+++|... .+-.....+++-+.++ .|+.+.+...+...+...-.+....++++++++||= |...
T Consensus 44 r~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~--------~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~ 115 (343)
T PRK10936 44 KKAWKLCALYPHLKDSYWLSVNYGMVEEAKR--------LGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTP 115 (343)
T ss_pred CCCeEEEEEecCCCchHHHHHHHHHHHHHHH--------hCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 35779999998743 2212233444444443 145555443222234444455566677788888774 4333
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-----CCcEEEEEEecCC--cccc
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-----GWGEVIAIFNDDD--QGRN 174 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-----~W~~v~ii~~~~~--~g~~ 174 (549)
....... .+...++|+|.+..... ++. ....+.+.....++..++.+... |-++++++..+.. ....
T Consensus 116 ~~~~~~l-~~~~~giPvV~~~~~~~--~~~---~~~~V~~D~~~~g~~aa~~L~~~~~~~~g~~~i~~i~g~~~~~~~~~ 189 (343)
T PRK10936 116 DGLNPDL-ELQAANIPVIALVNGID--SPQ---VTTRVGVSWYQMGYQAGRYLAQWHPKGSKPLNVALLPGPEGAGGSKA 189 (343)
T ss_pred HHhHHHH-HHHHCCCCEEEecCCCC--Ccc---ceEEEecChHHHHHHHHHHHHHHHHhcCCCceEEEEECCCCCchHHH
Confidence 3322222 45678999997632211 111 12335567777778788877665 4689998874322 2234
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
..+.+++.+++.|+++.... ... .....-...++++.+ ...+.|+ +....+..+++.+++.|+. +.+.|.
T Consensus 190 R~~Gf~~~l~~~~i~~~~~~-~~~---~~~~~~~~~~~~~l~~~~~~~ai~--~~d~~A~ga~~al~~~g~~--~di~Vv 261 (343)
T PRK10936 190 VEQGFRAAIAGSDVRIVDIA-YGD---NDKELQRNLLQELLERHPDIDYIA--GSAVAAEAAIGELRGRNLT--DKIKLV 261 (343)
T ss_pred HHHHHHHHHhcCCCEEEEee-cCC---CcHHHHHHHHHHHHHhCCCccEEE--eCCHHHHHHHHHHHhcCCC--CCeEEE
Confidence 46677888888888765421 111 112222334444432 2356665 3445666788888888863 334444
Q ss_pred e
Q 008904 253 T 253 (549)
Q Consensus 253 ~ 253 (549)
+
T Consensus 262 g 262 (343)
T PRK10936 262 S 262 (343)
T ss_pred E
Confidence 3
|
|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.3e-05 Score=93.11 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=65.6
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++++|++.. +|.|+......+++++||.+|+++.|++.+|++ ++++.. .+|+.++..|.+|++||+++.
T Consensus 55 ~~~l~vgv~~--~~~p~~~~~~~~g~~~G~~~D~l~~ia~~lG~~--~e~v~~------~~~~~~l~~l~~g~iDl~~~~ 124 (1197)
T PRK09959 55 KKNLVIAVHK--SQTATLLHTDSQQRVRGINADYLNLLKRALNIK--LTLREY------ADHQKAMDALEEGEVDIVLSH 124 (1197)
T ss_pred CCeEEEEecC--CCCCCceeecCCCccceecHHHHHHHHHhcCCc--eEEEeC------CCHHHHHHHHHcCCCcEecCc
Confidence 5779999865 444443333357889999999999999999999 999875 379999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|.
T Consensus 125 ~~~~~~r~ 132 (1197)
T PRK09959 125 LVASPPLN 132 (1197)
T ss_pred cccccccc
Confidence 99999986
|
|
| >PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0027 Score=59.75 Aligned_cols=201 Identities=15% Similarity=0.101 Sum_probs=129.6
Q ss_pred EEEEeccCCC-CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCCchHHHH
Q 008904 29 VGAIFSFGTV-NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMAHV 106 (549)
Q Consensus 29 IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~~ 106 (549)
||++++.... +......+++-+.++. |..+.+. .+...++..-.+.+.+++++++++|| .|..+.....
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~ 71 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKEL--------GYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAP 71 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHH--------TCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHH
Confidence 6888888643 3345677888888774 4555555 78888898888888899999999888 5666655556
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCC--cEEEEEEecCCc--ccchHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAIFNDDDQ--GRNGVTALGDK 182 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W--~~v~ii~~~~~~--g~~~~~~l~~~ 182 (549)
...-+...+||+|.+... .. ...+....+.++....+..+++++....- .++.++.....+ .....+.+.+.
T Consensus 72 ~l~~~~~~gIpvv~~d~~--~~--~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~ 147 (257)
T PF13407_consen 72 FLEKAKAAGIPVVTVDSD--EA--PDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDA 147 (257)
T ss_dssp HHHHHHHTTSEEEEESST--HH--TTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHH
T ss_pred HHHHHhhcCceEEEEecc--cc--ccccceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHH
Confidence 666688889999997443 00 12244456667788889999999866433 577777543332 23456677777
Q ss_pred Hhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCC
Q 008904 183 LAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMD 245 (549)
Q Consensus 183 ~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~ 245 (549)
+++. ++++..... ... .........+.++...++-..|+++....+..+++.+++.|+..
T Consensus 148 l~~~~~~~~~~~~~-~~~--~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~g~~~al~~~g~~~ 208 (257)
T PF13407_consen 148 LKEYPGVEIVDEYE-YTD--WDPEDARQAIENLLQANPVDAIIACNDGMALGAAQALQQAGRAG 208 (257)
T ss_dssp HHHCTTEEEEEEEE-ECT--TSHHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHHHHTTCTT
T ss_pred Hhhcceeeeeeeee-ccC--CCHHHHHHHHHHhhhcCCceEEEeCCChHHHHHHHHHHHcCCcc
Confidence 8773 566555322 211 23445555555544444333445566666777888888888743
|
... |
| >cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0015 Score=61.98 Aligned_cols=207 Identities=10% Similarity=0.002 Sum_probs=118.2
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.. ..+-.....+++-+.++ .|+.+.+.. +..++..-.+....++..+++++|-..+.. ...
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiii~~~~~-~~~ 69 (268)
T cd06298 1 TVGVIIPDITNSYFAELARGIDDIATM--------YKYNIILSN--SDNDKEKELKVLNNLLAKQVDGIIFMGGKI-SEE 69 (268)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHHH--------cCCeEEEEe--CCCCHHHHHHHHHHHHHhcCCEEEEeCCCC-cHH
Confidence 378888863 22222233444443333 145555443 344565555666667777888888422211 123
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC---cccchHHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD---QGRNGVTALGDKL 183 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~---~g~~~~~~l~~~~ 183 (549)
+...+...++|+|.+....+ ....+ .+.+.....++.+++.+...|-++++++..+.. .+....+.|.+.+
T Consensus 70 ~~~~l~~~~ipvV~~~~~~~---~~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~gf~~~~ 143 (268)
T cd06298 70 HREEFKRSPTPVVLAGSVDE---DNELP---SVNIDYKKAAFEATELLIKNGHKKIAFISGPLEDSINGDERLAGYKEAL 143 (268)
T ss_pred HHHHHhcCCCCEEEEccccC---CCCCC---EEEECcHHHHHHHHHHHHHcCCceEEEEeCCcccccchhHHHHHHHHHH
Confidence 44445667999998754321 11122 245567777888888888888899999975433 4556678888899
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC-CeEEEEEcchHHHHHHHHHHHHcCCCCCCe-EEEEeC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSGY-VWIATT 254 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~~~~~~~il~~a~~~g~~~~~~-~~i~~~ 254 (549)
++.|+.+......... .+.......++++.... +++|+. .+...+..+++.+++.|+..++. .++..+
T Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~~~~~~l~~~g~~vp~di~vvg~d 213 (268)
T cd06298 144 SEANIEFDESLIFEGD--YTYESGYELAEELLEDGKPTAAFV-TDDELAIGILNAAQDAGLKVPEDFEIIGFN 213 (268)
T ss_pred HHcCCCCCHHHeEeCC--CChhHHHHHHHHHhcCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCccceEEEeec
Confidence 8888654211111111 11222334455555444 555554 45555778899999988765443 344443
|
Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators. |
| >cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0021 Score=60.77 Aligned_cols=198 Identities=8% Similarity=-0.018 Sum_probs=111.5
Q ss_pred EEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 29 VGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 29 IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
||+++|... .+-.....+++-|.++ .|+.+ .+.|+..++....+....+..++++++|......... .
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~--------~g~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-~ 70 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEARE--------AGYGV--LLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPPT-A 70 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHH--------cCCeE--EEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCHH-H
Confidence 788887643 2222334444444444 24555 4556666666555555666677899888632221212 2
Q ss_pred HHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC--CcccchHHHHHHHHhh
Q 008904 108 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGDKLAE 185 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~--~~g~~~~~~l~~~~~~ 185 (549)
.... ..++|+|......+ . +.+..+..+....+..+++.+...|.++++++..+. ..+....+.|.+.+++
T Consensus 71 ~~~~-~~~ipvv~~~~~~~---~---~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~~~~ 143 (267)
T cd06284 71 LTAL-AKLPPIVQACEYIP---G---LAVPSVSIDNVAAARLAVDHLISLGHRRIALITGPRDNPLARDRLEGYRQALAE 143 (267)
T ss_pred HHHH-hcCCCEEEEecccC---C---CCcceEEecccHHHHHHHHHHHHcCCceEEEEcCCccchhHHHHHHHHHHHHHH
Confidence 2333 34999998642211 1 122334556677788888888888999999997642 3445567788888888
Q ss_pred cCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 186 IRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 186 ~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
.|+.+......... .........++++.+. ..+.|+. .+...+..+++++++.|+..++
T Consensus 144 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~~~~a~g~~~al~~~g~~~p~ 204 (267)
T cd06284 144 AGLPADEELIQEGD--FSLESGYAAARRLLALPDRPTAIFC-FSDEMAIGAISALKELGLRVPE 204 (267)
T ss_pred cCCCCCcceEEeCC--CChHHHHHHHHHHHhCCCCCcEEEE-cCcHHHHHHHHHHHHcCCCCcc
Confidence 87543211111111 1122233444554333 3455544 4545567788888888875433
|
This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding. |
| >PRK10355 xylF D-xylose transporter subunit XylF; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0059 Score=59.88 Aligned_cols=219 Identities=9% Similarity=-0.040 Sum_probs=120.7
Q ss_pred hHHHHHHHHhhhcccccCCCCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHH
Q 008904 4 WWLVSIFSFCIGTAIQGALKPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82 (549)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~ 82 (549)
+++.++..+++ .+.+...+..+||++.+.. ..+......+++-+.++ . |+.+.+ .++..++..-.+
T Consensus 6 ~~~~~~~~~~~---~~~~~~~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~---~-----g~~l~i--~~~~~~~~~~~~ 72 (330)
T PRK10355 6 ILLTLCASLLL---TSVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAES---L-----GAKVFV--QSANGNEETQMS 72 (330)
T ss_pred HHHHHHHHHHH---hhccccCCCceEEEEecCCCchHHHHHHHHHHHHHHH---c-----CCEEEE--ECCCCCHHHHHH
Confidence 34444444444 3333345689999999864 33333334444444443 2 455544 455556665556
Q ss_pred HHHHHHhcCcEEEEcCCCc-hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcE
Q 008904 83 GALQFMETDTLAIVGPQSA-VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGE 161 (549)
Q Consensus 83 ~~~~l~~~~v~aiiGp~~s-~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~ 161 (549)
....+++++++++|=.... .........+...++|+|.+... ..+. +....+.++....++.+++.|...|-++
T Consensus 73 ~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~~~~iPvV~id~~---~~~~--~~~~~V~~D~~~~g~~a~~~L~~~g~~~ 147 (330)
T PRK10355 73 QIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDRM---INNA--DIDFYISFDNEKVGELQAKALVDKVPQG 147 (330)
T ss_pred HHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCeEEEECCC---CCCC--CccEEEecCHHHHHHHHHHHHHHhcCCC
Confidence 6667777889888753322 22223334556778999987432 1111 1123466778888899999998888888
Q ss_pred EEEEEecCC---cccchHHHHHHHHhhc---C-eEEEEEEccCCCCCCChhhHHHHHHHHh-c--CCCeEEEEEcchHHH
Q 008904 162 VIAIFNDDD---QGRNGVTALGDKLAEI---R-CKISYKSALPPDQSVTETDVRNELVKVR-M--MEARVIVVHGYSRTG 231 (549)
Q Consensus 162 v~ii~~~~~---~g~~~~~~l~~~~~~~---g-~~v~~~~~~~~~~~~~~~~~~~~l~~l~-~--~~~~viil~~~~~~~ 231 (549)
++++..... ......+.+.+.++++ | +.+....... . ....+-...++++. + ..++. |++.+...+
T Consensus 148 i~~i~~g~~~~~~~~~R~~gf~~~l~~~~~~~~i~~~~~~~~~-~--~~~~~~~~~~~~lL~~~~~~~~a-I~~~nD~~A 223 (330)
T PRK10355 148 NYFLMGGSPVDNNAKLFRAGQMKVLKPYIDSGKIKVVGDQWVD-G--WLPENALKIMENALTANNNKIDA-VVASNDATA 223 (330)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHHhhhccCCCeEEecccCCC-C--CCHHHHHHHHHHHHHhCCCCccE-EEECCCchH
Confidence 766553221 2234456666666653 4 4432211111 1 11222233444432 2 23454 444555666
Q ss_pred HHHHHHHHHcCCC
Q 008904 232 LMVFDVAQRLGMM 244 (549)
Q Consensus 232 ~~il~~a~~~g~~ 244 (549)
..+++.++++|+.
T Consensus 224 ~g~l~al~~~g~~ 236 (330)
T PRK10355 224 GGAIQALSAQGLS 236 (330)
T ss_pred HHHHHHHHHCCCC
Confidence 6788899998875
|
|
| >cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0026 Score=60.25 Aligned_cols=202 Identities=10% Similarity=0.033 Sum_probs=114.8
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.. ..+-.....+++.+.++. |+++. +.++..++..-.+....+++++++++|...+......
T Consensus 1 ~I~vi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~ 70 (268)
T cd06289 1 TIGLVINDLTNPFFAELAAGLEEVLEEA--------GYTVF--LANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPD 70 (268)
T ss_pred CEEEEecCCCcchHHHHHHHHHHHHHHc--------CCeEE--EecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHH
Confidence 378888763 222234455665555542 45553 3444556655556666777789998887544332223
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 184 (549)
....+...++|+|.+....+ +...+ .+.++....+..+++.+...|-++++++..+.. ......+.|.+.++
T Consensus 71 ~~~~~~~~~ipvV~~~~~~~---~~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~l~ 144 (268)
T cd06289 71 LLKRLAESGIPVVLVAREVA---GAPFD---YVGPDNAAGARLATEHLISLGHRRIAFIGGLEDSSTRRERLAGYRAALA 144 (268)
T ss_pred HHHHHHhcCCCEEEEeccCC---CCCCC---EEeecchHHHHHHHHHHHHCCCCCEEEecCCccccchHHHHHHHHHHHH
Confidence 44556778999998743221 11122 244566667888888888888899998875332 34456678888888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCe
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~ 248 (549)
+.|..+.....+... .........++++... ..++|+ +.+...+..+++.+++.|+..++-
T Consensus 145 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~i~-~~~~~~a~~~~~al~~~g~~~p~d 207 (268)
T cd06289 145 EAGLPFDSELVVEGP--PSRQGGAEAVAQLLDLPPRPTAIV-CFNDLVAFGAMSGLRRAGLTPGRD 207 (268)
T ss_pred HcCCCCCchhEEecC--cchhhHHHHHHHHHcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCcc
Confidence 777432111111111 1122223444444333 345444 344555667888888888764433
|
This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.007 Score=57.85 Aligned_cols=214 Identities=6% Similarity=-0.004 Sum_probs=113.3
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC--CChHHHHHHHHHHHhcCcEEEEcCCCch-HH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK--FNGFLSIMGALQFMETDTLAIVGPQSAV-MA 104 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~--~~~~~a~~~~~~l~~~~v~aiiGp~~s~-~~ 104 (549)
+||+++|.... ...+...+.-..+...+. |+.+.+...++. .++..-.+....++.+++++||=...+. ..
T Consensus 1 ~Igvi~~~~~~-~~~~~~~~~~i~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~ 74 (280)
T cd06303 1 KIAVIYPGQQI-SDYWVRNIASFTARLEEL-----NIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHR 74 (280)
T ss_pred CeeEEecCccH-HHHHHHHHHHHHHHHHHc-----CCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCchhhH
Confidence 58999986310 011222222222333332 556666544432 2444445555567778898888633322 22
Q ss_pred HHHHHhhhhcCCcEEeccc-CCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH--cCCcEEEEEEecC-CcccchHHHHH
Q 008904 105 HVLSHLANELQVPLLSFTA-LDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFNDD-DQGRNGVTALG 180 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~-~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~--~~W~~v~ii~~~~-~~g~~~~~~l~ 180 (549)
..+..+ ...++|.|.... ..+.......+....+.+.....+..+++.|.. .|.++++++.... .......+.|.
T Consensus 75 ~~~~~l-~~~~~p~V~i~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~g~~~i~~l~~~~~~~~~~R~~gf~ 153 (280)
T cd06303 75 KLIERV-LASGKTKIILQNITTPVKAWLKHQPLLYVGFDHAAGARLLADYFIKRYPNHARYAMLYFSPGYISTARGDTFI 153 (280)
T ss_pred HHHHHH-HhCCCCeEEEeCCCCCccccccCCCceEeCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCcchhHHHHHHH
Confidence 333443 345677766522 222100000122344566777777888888877 7899999997532 22334567778
Q ss_pred HHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 181 DKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 181 ~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+.+++. |+.+... .... .........++++.+.. .+. |++.+...+..+++.+++.|+. .+...++.+
T Consensus 154 ~al~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~a-i~~~nd~~A~g~l~al~~~G~~-~dv~vvg~d 224 (280)
T cd06303 154 DCVHARNNWTLTSE--FYTD--ATRQKAYQATSDILSNNPDVDF-IYACSTDIALGASDALKELGRE-DDILINGWG 224 (280)
T ss_pred HHHHhCCCceEEEe--ecCC--CCHHHHHHHHHHHHHhCCCCcE-EEECCcHHHHHHHHHHHHcCCC-CCcEEEecC
Confidence 888887 6654322 1111 12223334445543333 344 4455566677899999999975 444444443
|
Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate |
| >TIGR02285 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.87 E-value=3e-05 Score=73.70 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC-CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l-~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
.+++++++. .|+||.+.. +++...||.+|+++++++.+ +++ +++... +|++++..| .|+.|+++.
T Consensus 17 ~~~l~~~~~---~~pPf~~~~-~~~~~~G~~~~i~~~i~~~~~~~~--~~~~~~-------pw~r~l~~l-~~~~d~~~~ 82 (268)
T TIGR02285 17 KEAITWIVN---DFPPFFIFS-GPSKGRGVFDVILQEIRRALPQYE--HRFVRV-------SFARSLKEL-QGKGGVCTV 82 (268)
T ss_pred cceeEEEec---ccCCeeEeC-CCCCCCChHHHHHHHHHHHcCCCc--eeEEEC-------CHHHHHHHH-hcCCCeEEe
Confidence 467888774 466776643 45677999999999999998 888 999998 999999999 888888888
Q ss_pred ceEEeecccC
Q 008904 540 KVAQLTRVSL 549 (549)
Q Consensus 540 ~~ti~~~r~~ 549 (549)
++++|+||+.
T Consensus 83 ~~~~t~eR~~ 92 (268)
T TIGR02285 83 NLLRTPEREK 92 (268)
T ss_pred eccCCcchhh
Confidence 8999999973
|
Members of this family are found in several Proteobacteria, including Pseudomonas putida KT2440, Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown. |
| >PRK09701 D-allose transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.02 Score=55.67 Aligned_cols=212 Identities=11% Similarity=0.033 Sum_probs=116.2
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH-
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA- 104 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~- 104 (549)
.||+++|... ++-.....+++-+.++ .|+.+.+...+...+...-.+...+++.+++++||- +..+...
T Consensus 26 ~Igvi~~~~~~~f~~~~~~gi~~~a~~--------~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~ 97 (311)
T PRK09701 26 EYAVVLKTLSNPFWVDMKKGIEDEAKT--------LGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 97 (311)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHH--------cCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 8999998642 2222233444333332 256666543344445555566666777888888875 3333222
Q ss_pred HHHHHhhhhcCCcEEecccCCCC--CCCCCCCceEEccCCcHHHHHHHHHHHHH-cCC--cEEEEEEecC--CcccchHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPT--LSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGW--GEVIAIFNDD--DQGRNGVT 177 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~--ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W--~~v~ii~~~~--~~g~~~~~ 177 (549)
..+.. +...++|++.+....+. +..........+..+....+...++.+.. .|- ++++++.... .......+
T Consensus 98 ~~l~~-~~~~giPvV~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~aa~~L~~~~g~~~~~i~~l~g~~~~~~~~~R~~ 176 (311)
T PRK09701 98 MPVAR-AWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRN 176 (311)
T ss_pred HHHHH-HHHCCCcEEEeCCCCCcccccccCCceEEEeccchHHHHHHHHHHHHHHhCCCCCEEEEEECCCCCccHHHHHH
Confidence 23333 35689999998543221 11001112334667777788888888755 454 7998886433 22345567
Q ss_pred HHHHHHhhcC-eEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 178 ALGDKLAEIR-CKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 178 ~l~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+.+.+++.| +.+.... ... .....-...++++.+. .++. |++.+...+..++..+++.|.. .+...++.+
T Consensus 177 Gf~~al~~~~~~~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~~-I~~~~d~~A~g~~~al~~~G~~-~dv~vvg~d 250 (311)
T PRK09701 177 GATEAFKKASQIKLVASQ--PAD--WDRIKALDVATNVLQRNPNIKA-IYCANDTMAMGVAQAVANAGKT-GKVLVVGTD 250 (311)
T ss_pred HHHHHHHhCCCcEEEEec--CCC--CCHHHHHHHHHHHHHhCCCCCE-EEECCcchHHHHHHHHHHcCCC-CCEEEEEeC
Confidence 7888888777 6654321 111 1122233455555333 3444 4445555677788888888874 333334333
|
|
| >cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0094 Score=57.20 Aligned_cols=215 Identities=11% Similarity=0.038 Sum_probs=114.8
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||+++|.. .++-.....+++.+.++ .|+++. +.+.. ++..-.+....++..++.+||= +..+....
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~ 69 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKE--------KGFTVV--KIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGP 69 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHH--------cCCEEE--EccCC-CHHHHHHHHHHHHHcCCCEEEEccCchhhhH
Confidence 488888853 22323344555555554 255554 44444 5555555556677778887775 33333344
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHH----HcCC--cEEEEEEe-cC--CcccchH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS----YFGW--GEVIAIFN-DD--DQGRNGV 176 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~----~~~W--~~v~ii~~-~~--~~g~~~~ 176 (549)
.....+...++|+|.+....+....+..+.+-.+..+....+...++++. ..|| +++++|.. .. .......
T Consensus 70 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~g~~~~~i~~i~~~~~~~~~~~~R~ 149 (289)
T cd01540 70 AIVAKAKAYNMKVVAVDDRLVDADGKPMEDVPHVGMSATKIGEQVGEAIADEMKKRGWDPKEVGALRITYDELDTAKPRT 149 (289)
T ss_pred HHHHHHHhCCCeEEEecCCCcccCCCccccceEecCCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCcchhhHH
Confidence 45566778999999874332111100112223344556655665555544 4677 78888752 22 2345567
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeE-EEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARV-IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~v-iil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
+.+.+.+++.|+........+... .+.......++++..+. .+. .|++.+...+..+++.+.+.|....+...++.
T Consensus 150 ~G~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d~~a~g~~~al~~~g~~~~di~vig~ 228 (289)
T cd01540 150 DGALEALKAPGFPEANIFQAPQKT-TDTEGAFDAAASTLTKNPNVKNWIIYGLNDETVLGAVRATEQSGIAAADVIGVGI 228 (289)
T ss_pred HHHHHHHhcCCCCcceEecccccC-cchhhHHHHHHHHHHhCCCcCeeEEEeCCcHHHHHHHHHHHHcCCCCcceEEEec
Confidence 788888888776532211111110 01112223444543332 343 45556666677888888999986334444443
Q ss_pred C
Q 008904 254 T 254 (549)
Q Consensus 254 ~ 254 (549)
+
T Consensus 229 d 229 (289)
T cd01540 229 N 229 (289)
T ss_pred C
Confidence 3
|
Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a |
| >cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0051 Score=58.33 Aligned_cols=206 Identities=9% Similarity=-0.036 Sum_probs=114.3
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.. ..+......+++-+.++ .|+++.+ .++..++..-.+....+..+++++||=.........
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 70 (269)
T cd06275 1 TIGMLVTTSTNPFFAEVVRGVEQYCYR--------QGYNLIL--CNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPL 70 (269)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCChHHHHHHHHHHHHcCCCEEEEecCCCChHH
Confidence 378888864 23333344555555444 2455543 445556665556666777778887774322222222
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 184 (549)
+..+....++|+|......+ +..+++ +.......++.+++.+...|-++++++..... ......+.|.+.++
T Consensus 71 ~~~l~~~~~ipvV~i~~~~~---~~~~~~---V~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~ 144 (269)
T cd06275 71 LAMLERYRHIPMVVMDWGPE---DDFADK---IQDNSEEGGYLATRHLIELGHRRIGCITGPLEKAPAQQRLAGFRRAMA 144 (269)
T ss_pred HHHHHhcCCCCEEEEecccC---CCCCCe---EeeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHH
Confidence 23343456999998753221 112232 34556667788888888889999999874322 23345677788888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.|+.+......... .........++++.+.. .+. |++.+...+..+++.+++.|...++-+.+.
T Consensus 145 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~~l~~~g~~vp~di~vv 211 (269)
T cd06275 145 EAGLPVNPGWIVEGD--FECEGGYEAMQRLLAQPKRPTA-VFCGNDLMAMGALCAAQEAGLRVPQDLSII 211 (269)
T ss_pred HcCCCCCHHHhccCC--CChHHHHHHHHHHHcCCCCCcE-EEECChHHHHHHHHHHHHcCCCCCcceEEE
Confidence 877654321111111 11222334455544333 343 344455566678888888887544444443
|
Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a |
| >cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.012 Score=56.95 Aligned_cols=208 Identities=10% Similarity=0.065 Sum_probs=109.5
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCCchHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~~ 105 (549)
+||++.|... .+-.....+++-+.++. +..+.+.+.+...++..-.+....++..++.+|| .|..+....
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~--------~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~ 72 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKEN--------GGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQ 72 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhh--------CCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHH
Confidence 5899998642 22223344444444443 1234455566666776666666677888888766 354443334
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCc-----------EEEEEEecCC--
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWG-----------EVIAIFNDDD-- 170 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~-----------~v~ii~~~~~-- 170 (549)
.....+...++|+|.+....+...-....-+..+.++....++..+++|... +-+ .++++..+..
T Consensus 73 ~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~a~~l~~~~~~~~~~~~~~~~g~~~i~~~~g~~~~~ 152 (303)
T cd01539 73 TVINKAKQKNIPVIFFNREPEEEDIKSYDKAYYVGTDAEQSGILQGKLIADYWNANKDALDKNGDGIIQYVMLKGEPGHP 152 (303)
T ss_pred HHHHHHHHCCCCEEEeCCCCcccccccccccceeeecHHHHHHHHHHHHHHHhhccccccccCCCCceEEEEEEcCCCCc
Confidence 4445567789999987543211100111223445667766777777777553 211 2344443322
Q ss_pred cccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC-C--CeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 171 QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-E--ARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 171 ~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~--~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
......+.+.+.+++.+..+......... .........++++... . .+.|+ +.+...+..+++++++.|...+
T Consensus 153 ~~~~R~~gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~~p 228 (303)
T cd01539 153 DAIARTKYSIETLNDAGIKTEELASDTAN--WDRAQAKDKMDALLLKYGDKIEAVI-ANNDAMALGAIEALQKYGYNKG 228 (303)
T ss_pred hhhhhhhhHHHHHHhcCCCeEEEEeecCC--CCHHHHHHHHHHHHHhcCCCccEEE-ECCchHHHHHHHHHHHcCCCcC
Confidence 22334566788888887654332111111 1222233344554322 2 34433 3444455567888888887554
|
Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. |
| >cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.011 Score=56.15 Aligned_cols=206 Identities=9% Similarity=-0.032 Sum_probs=114.7
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||+++|... .+-.....++.-+.++. |..+.+.+.++..++..-.+....++.++++++|= |.......
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~ 72 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKL--------NPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIA 72 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHh--------CCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhH
Confidence 4889998642 22223444555454443 23345555566666665555556667778877763 43332222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC-cccchHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRNGVTALGDK 182 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~-~g~~~~~~l~~~ 182 (549)
.....+...++|+|......+ + . ...+..+....++.+++.+... |.++++++..... ......+.+.+.
T Consensus 73 ~~i~~~~~~~ipvv~~~~~~~---~-~---~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~g~~~~~~~~R~~g~~~~ 145 (271)
T cd06321 73 PAVKRAQAAGIVVVAVDVAAE---G-A---DATVTTDNVQAGEISCQYLADRLGGKGNVAILNGPPVSAVLDRVAGCKAA 145 (271)
T ss_pred HHHHHHHHCCCeEEEecCCCC---C-c---cceeeechHHHHHHHHHHHHHHhCCCceEEEEeCCCCchHHHHHHHHHHH
Confidence 333344567999999854322 1 1 1235567777788888888887 9999999975432 233445677777
Q ss_pred Hhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 183 LAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 183 ~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+++. +++..... .... .+...-...++++.+. .++.|+. .+...+..+++.+++.|+ .+...++.+
T Consensus 146 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~--~di~v~g~d 214 (271)
T cd06321 146 LAKYPGIKLLSDD-QNGK--GSRDGGLRVMQGLLTRFPKLDGVFA-INDPTAIGADLAAKQAGR--NDIKITSVD 214 (271)
T ss_pred HHhCCCcEEEeee-cCCC--CChhhHHHHHHHHHHhCCCCCEEEE-CCchhHHHHHHHHHHcCC--CCcEEEEec
Confidence 8777 56432211 1111 1111222344444333 3455443 445566678888888886 355555544
|
This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >TIGR01481 ccpA catabolite control protein A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0063 Score=59.73 Aligned_cols=204 Identities=7% Similarity=0.012 Sum_probs=115.5
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
...-.||+++|.. ..+-.....+++-+.++ .|+.+.+. +...++..-.+....+..++++++|--...
T Consensus 57 ~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~--------~g~~~~i~--~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~- 125 (329)
T TIGR01481 57 KRTTTVGVIIPDISNIYYAELARGIEDIATM--------YKYNIILS--NSDEDPEKEVQVLNTLLSKQVDGIIFMGGT- 125 (329)
T ss_pred CCCCEEEEEeCCCCchhHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-
Confidence 3456899999853 22222333444433333 25555443 333444444445555667788887732111
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC---cccchHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD---QGRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~---~g~~~~~~l 179 (549)
....+...+...++|+|......+ ...++ .+.+....-+..+++.|...|.++++++..... .+....+.|
T Consensus 126 ~~~~~~~~l~~~~iPvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~~R~~Gf 199 (329)
T TIGR01481 126 ITEKLREEFSRSPVPVVLAGTVDK---ENELP---SVNIDYKQATKEAVGELIAKGHKSIAFVGGPLSDSINGEDRLEGY 199 (329)
T ss_pred CChHHHHHHHhcCCCEEEEecCCC---CCCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccccchHHHHHHH
Confidence 112233455667999998743221 11223 344566666777888888889999999964321 235567788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
.+.+++.|+.+......... .....-...++++.+..++.|+. .+...+..+++.+++.|+..++
T Consensus 200 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~p~ai~~-~~d~~A~g~~~al~~~g~~vP~ 264 (329)
T TIGR01481 200 KEALNKAGIQFGEDLVCEGK--YSYDAGYKAFAELKGSLPTAVFV-ASDEMAAGILNAAMDAGIKVPE 264 (329)
T ss_pred HHHHHHcCCCCCcceEEecC--CChHHHHHHHHHHhCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCC
Confidence 88888888754321111111 11222334555655555666554 4455677899999999976544
|
Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways. |
| >cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0051 Score=58.22 Aligned_cols=203 Identities=12% Similarity=0.064 Sum_probs=112.7
Q ss_pred EEEEeccC-----CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcCCCch
Q 008904 29 VGAIFSFG-----TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGPQSAV 102 (549)
Q Consensus 29 IG~l~~~~-----~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~~s~ 102 (549)
||+++|.. ..+......+++.+.++ .|+.+.+...+.. ....+.+.+++. ++++++|...+..
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~i~~~~~~--------~g~~~~~~~~~~~---~~~~~~~~~~~~~~~vdgiii~~~~~ 70 (268)
T cd06271 2 IGLVLPTGEREEGDPFFAEFLSGLSEALAE--------HGYDLVLLPVDPD---EDPLEVYRRLVESGLVDGVIISRTRP 70 (268)
T ss_pred eEEEeCCcccccCCccHHHHHHHHHHHHHH--------CCceEEEecCCCc---HHHHHHHHHHHHcCCCCEEEEecCCC
Confidence 78898862 22222333444333333 2566666544332 233345566654 4788888643322
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~ 180 (549)
....+ ..+...++|+|.+....+ +..+++ +.++....+..+++.+...|-++++++..... .+....+.|.
T Consensus 71 ~~~~~-~~~~~~~ipvV~~~~~~~---~~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~ 143 (268)
T cd06271 71 DDPRV-ALLLERGFPFVTHGRTEL---GDPHPW---VDFDNEAAAYQAVRRLIALGHRRIALLNPPEDLTFAQHRRAGYR 143 (268)
T ss_pred CChHH-HHHHhcCCCEEEECCcCC---CCCCCe---EeeCcHHHHHHHHHHHHHcCCCcEEEecCccccchHHHHHHHHH
Confidence 22223 445678999998743221 122343 33566677788888888889999999975432 2344567888
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+++.|..+.....+... .+.......++++.+. .+++|+. .+...+..+++.+++.|+..++.+-+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vp~~i~ii 214 (268)
T cd06271 144 RALAEAGLPLDPALIVSGD--MTEEGGYAAAAELLALPDRPTAIVC-SSELMALGVLAALAEAGLRPGRDVSVV 214 (268)
T ss_pred HHHHHhCCCCCCceEEeCC--CChHHHHHHHHHHHhCCCCCCEEEE-cCcHHHHHHHHHHHHhCCCCCcceeEE
Confidence 8888887653211111111 1222334455555333 2455544 445566678889999887655444443
|
Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso |
| >cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.023 Score=53.73 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=111.5
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~ 106 (549)
.||+++|... ..+...+...+++.=+. .|+.+ .+.++..++....+....+++++++++|- |........
T Consensus 1 ~i~~~~~~~~---~~~~~~~~~~i~~~~~~----~g~~~--~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~ 71 (267)
T cd06322 1 VIGASLLTQQ---HPFYIELANAMKEEAKK----QKVNL--IVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRA 71 (267)
T ss_pred CeeEeecCcc---cHHHHHHHHHHHHHHHh----cCCEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHH
Confidence 3788888753 22223333333332222 24444 44566566766667777788889998876 443332233
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC-cccchHHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRNGVTALGDKL 183 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~-~g~~~~~~l~~~~ 183 (549)
....+...++|+|.+.... + ..+.+..+.+.....+...++++... |-+++++++..+. ......+.+++.+
T Consensus 72 ~~~~~~~~~ipvV~~~~~~----~-~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~ 146 (267)
T cd06322 72 AIAKAKKAGIPVITVDIAA----E-GVAVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGFKEAL 146 (267)
T ss_pred HHHHHHHCCCCEEEEcccC----C-CCceEEEEecChHHHHHHHHHHHHHHhCCCceEEEEecCCCccHHHHHHHHHHHH
Confidence 3344567899999974321 1 11223345666667777788888765 7789999974322 2334567788888
Q ss_pred hhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 184 AEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 184 ~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
++. |+.+.... .. .........++++... +.++ |++.+...+..+++.+.+.|.
T Consensus 147 ~~~~~~~~~~~~---~~--~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~~~~~al~~~g~ 203 (267)
T cd06322 147 ADYPNIKIVAVQ---PG--ITRAEALTAAQNILQANPDLDG-IFAFGDDAALGAVSAIKAAGR 203 (267)
T ss_pred HhCCCcEEEEec---CC--CChHHHHHHHHHHHHhCCCCCE-EEEcCCcHHHHHHHHHHHCCC
Confidence 887 77654321 11 1122233344444322 3444 344455566678888888886
|
This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0055 Score=58.03 Aligned_cols=203 Identities=12% Similarity=0.038 Sum_probs=115.6
Q ss_pred EEEEEeccC--CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 28 NVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
.||+++|.. ..+......+++-+.++ .|+.+.+ .++..++..-.+....+...+++++|-.......
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~~i~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~- 69 (269)
T cd06288 1 TIGLISDEIATTPFAVEIILGAQDAARE--------HGYLLLV--VNTGGDDELEAEAVEALLDHRVDGIIYATMYHRE- 69 (269)
T ss_pred CeEEEeCCCCCCccHHHHHHHHHHHHHH--------CCCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCh-
Confidence 389999874 33333444555555544 2455543 3444445444455556677788888864332211
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKL 183 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~ 183 (549)
+.......++|+|......+. ..+ ..+.++....+..+++.+...|-++++++..+.. ......+.|.+.+
T Consensus 70 -~~~~~~~~~ipvv~~~~~~~~---~~~---~~v~~d~~~~~~~a~~~l~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~~ 142 (269)
T cd06288 70 -VTLPPELLSVPTVLLNCYDAD---GAL---PSVVPDEEQGGYDATRHLLAAGHRRIAFINGEPWMLAAKDRLKGYRQAL 142 (269)
T ss_pred -hHHHHHhcCCCEEEEecccCC---CCC---CeEEEccHHHHHHHHHHHHHcCCceEEEEeCCccchhHHHHHHHHHHHH
Confidence 122234578999987433221 122 3355677777888888888889999999975432 2344567788888
Q ss_pred hhcCeEEEE--EEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 184 AEIRCKISY--KSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 184 ~~~g~~v~~--~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
++.++.+.. ...... +..+....++++.+. .++.|+ +.+...+..+++.+++.|+..++-+.+++
T Consensus 143 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~~~~~~l~~~g~~vp~di~v~g 211 (269)
T cd06288 143 AEAGIPFDPDLVVHGDW----SADDGYEAAAALLDLDDRPTAIF-CGNDRMAMGAYQALLERGLRIPQDVSVVG 211 (269)
T ss_pred HHcCCCCCHHHeEeCCC----ChHHHHHHHHHHHhCCCCCCEEE-EeCcHHHHHHHHHHHHcCCCCcccceEEe
Confidence 887754321 111111 122233445555433 345554 45555666788888888876544455443
|
This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0088 Score=56.58 Aligned_cols=204 Identities=10% Similarity=0.033 Sum_probs=112.8
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|... ..-.....++.-+.++ .|+.+.+ .+...++..-.+....++.+++++||--..... ..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~ 69 (268)
T cd01575 1 LVAVLVPSLSNSVFADVLQGISDVLEA--------AGYQLLL--GNTGYSPEREEELLRTLLSRRPAGLILTGLEHT-ER 69 (268)
T ss_pred CEEEEeCCCcchhHHHHHHHHHHHHHH--------cCCEEEE--ecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC-HH
Confidence 3788888642 2212233444444443 1455544 434445554455566677778888875322212 22
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 184 (549)
....+...++|+|......+ . +....+..+....+..+++.+...|-++++++..+.. ........+.+.++
T Consensus 70 ~~~~~~~~~ipvv~~~~~~~---~---~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~ 143 (268)
T cd01575 70 TRQLLRAAGIPVVEIMDLPP---D---PIDMAVGFSHAEAGRAMARHLLARGYRRIGFLGARMDDTRAQQRLEGFRAALR 143 (268)
T ss_pred HHHHHHhcCCCEEEEecCCC---C---CCCCeEEeCcHHHHHHHHHHHHHCCCCcEEEecCCCCcccHHHHHHHHHHHHH
Confidence 33345567999998643211 1 1122344566777888888988889999999986542 33345567888888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.|............ .........++++.+. .++.|+ +++...+..+++.+.+.|...++.+-+
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~~~~~~l~~~g~~~p~di~v 209 (268)
T cd01575 144 AAGLDPPLVVTTPEP--SSFALGRELLAELLARWPDLDAVF-CSNDDLALGALFECQRRGISVPEDIAI 209 (268)
T ss_pred HcCCCCCceeEeccC--CCHHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHhCCCCCcceEE
Confidence 877532221111111 1122334455555433 345544 344555667888888888654444433
|
This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, |
| >cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.021 Score=54.25 Aligned_cols=202 Identities=10% Similarity=0.003 Sum_probs=111.4
Q ss_pred EEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHHH
Q 008904 29 VGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAHV 106 (549)
Q Consensus 29 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~ 106 (549)
||++.|.. ..+-.....+++-+.++..... .| +.+.+.+...++....+....++.+++++||- |........
T Consensus 2 Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~---~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~ 76 (274)
T cd06311 2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAY---PD--VEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQ 76 (274)
T ss_pred eeeeccCCCCcHHHHHHHHHHHHHHHhhhhC---CC--eEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHH
Confidence 77888653 3222344555555555543322 23 45555666555554444445577778887774 443333223
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC-cccchHHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRNGVTALGDKL 183 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~-~g~~~~~~l~~~~ 183 (549)
....+...+||+|......+ ... .....+.+.....+...++++... +-++++++..... ......+.|.+.+
T Consensus 77 ~i~~~~~~gIpvV~~d~~~~---~~~-~~~~~V~~d~~~~g~~aa~~l~~~~~g~~~i~~~~g~~~~~~~~R~~gf~~~l 152 (274)
T cd06311 77 PVAKAKKAGIFVVVVDRGLS---SPG-AQDLYVAGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDNERVDAFDAAI 152 (274)
T ss_pred HHHHHHHCCCeEEEEcCCCC---CCc-ccceEEcCCcHHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhHHHHHHHHHH
Confidence 23445678999998743211 110 112235666677778888887775 7889999875332 2234456788888
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
++.++++... .... .+.......++++-.. ..+.|+. .+...+..+++.+++.|..
T Consensus 153 ~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~ 210 (274)
T cd06311 153 AKYPIKILDR--QYAN--WNRDDAFSVMQDLLTKFPKIDAVWA-HDDDMAVGVLAAIKQAGRT 210 (274)
T ss_pred hhCCcEEEec--cCCC--CcHHHHHHHHHHHHHhCCCcCEEEE-CCCcHHHHHHHHHHHcCCC
Confidence 8888665432 1111 1122233444443322 3455433 3444566788888888864
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0054 Score=58.48 Aligned_cols=203 Identities=10% Similarity=0.027 Sum_probs=124.1
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
.||+++|.-.. .....+..++++.=++ .|+.+-+ .++..++..- +....+.+++|+++|=.........+
T Consensus 3 ~IGvivp~~~n---pff~~ii~gIe~~a~~----~Gy~l~l--~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~~~~~~~l 72 (279)
T PF00532_consen 3 TIGVIVPDISN---PFFAEIIRGIEQEARE----HGYQLLL--CNTGDDEEKE-EYIELLLQRRVDGIILASSENDDEEL 72 (279)
T ss_dssp EEEEEESSSTS---HHHHHHHHHHHHHHHH----TTCEEEE--EEETTTHHHH-HHHHHHHHTTSSEEEEESSSCTCHHH
T ss_pred EEEEEECCCCC---cHHHHHHHHHHHHHHH----cCCEEEE--ecCCCchHHH-HHHHHHHhcCCCEEEEecccCChHHH
Confidence 69999998632 2233333333332222 2666644 4445555554 66666777789888854333334566
Q ss_pred HHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcE-EEEEEecCCc--ccchHHHHHHHH
Q 008904 108 SHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGE-VIAIFNDDDQ--GRNGVTALGDKL 183 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~-v~ii~~~~~~--g~~~~~~l~~~~ 183 (549)
..+... ++|+|...... ... ..+++ ...+..-+..+++.|...|-++ |+++..+... .....+-+.+++
T Consensus 73 ~~~~~~-~iPvV~~~~~~---~~~~~~~~V---~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al 145 (279)
T PF00532_consen 73 RRLIKS-GIPVVLIDRYI---DNPEGVPSV---YIDNYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDAL 145 (279)
T ss_dssp HHHHHT-TSEEEEESS-S---CTTCTSCEE---EEEHHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCEEEEEecc---CCcccCCEE---EEcchHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHH
Confidence 677766 99999864331 111 23433 2456666778888899999999 9999876543 344556688999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeE-EEEEcchHHHHHHHHHHHHcC-CCCCCeE
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLG-MMDSGYV 249 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~v-iil~~~~~~~~~il~~a~~~g-~~~~~~~ 249 (549)
++.|+++......... .+..+-...++++-+..+++ .|++++...+.-+++.+.+.| +..+.-+
T Consensus 146 ~~~Gl~~~~~~i~~~~--~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga~~~l~~~gr~~ip~di 211 (279)
T PF00532_consen 146 KEAGLPIDEEWIFEGD--FDYESGYEAARELLESHPDIDAIFCANDMMAIGAIRALRERGRLKIPEDI 211 (279)
T ss_dssp HHTTSCEEEEEEEESS--SSHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHHHHHHHHTT-TCTTTEE
T ss_pred HHcCCCCCcccccccC--CCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHHHHHHHHcCCcccChhh
Confidence 9999866544333222 22333345566665555541 344566677778899999999 6666544
|
The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A .... |
| >PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.041 Score=53.94 Aligned_cols=209 Identities=10% Similarity=0.024 Sum_probs=107.1
Q ss_pred CCCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CC
Q 008904 22 LKPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQ 99 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~ 99 (549)
...++..||++++.. ..+-.....+++-+.+ +.+ +. .+.+.++..+.....+....+..++|.++|= +.
T Consensus 20 ~~~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~---~~g----~~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 90 (330)
T PRK15395 20 AAAADTRIGVTIYKYDDNFMSVVRKAIEKDAK---AAP----DV--QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 90 (330)
T ss_pred hhcCCceEEEEEecCcchHHHHHHHHHHHHHH---hcC----Ce--EEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 456678999999753 2222222333333333 322 23 3344455555555455555667778888774 33
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHc------------CCcEEEEEE
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYF------------GWGEVIAIF 166 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~------------~W~~v~ii~ 166 (549)
.+.........+...++|+|.+....+ ... ...+-...+..+....++.+++++.++ |-.++++|.
T Consensus 91 ~~~~~~~~l~~l~~~giPvV~vd~~~~-~~~~~~~~~~~~V~~D~~~ag~~a~~~l~~~~~~~~~~~~~~~g~~~i~~i~ 169 (330)
T PRK15395 91 DPAAAPTVIEKARGQDVPVVFFNKEPS-RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWKANPAWDLNKDGKIQYVLLK 169 (330)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEcCCcc-ccccccccceeEEccChHHHHHHHHHHHHHHHhhccccccCCCCceEEEEEe
Confidence 333233333456678999999854321 110 011222335566666666655654432 323344454
Q ss_pred ecC--CcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC----CCeEEEEEcchHHHHHHHHHHHH
Q 008904 167 NDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM----EARVIVVHGYSRTGLMVFDVAQR 240 (549)
Q Consensus 167 ~~~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~viil~~~~~~~~~il~~a~~ 240 (549)
... .......+.+.+.+++.|+.+.... ..... .+...-...++++.+. .++.| ++++...+..+++.+++
T Consensus 170 g~~~~~~~~~R~~G~~~al~~~g~~~~~~~-~~~~~-~~~~~a~~~~~~~l~~~~~~~~~ai-~~~~d~~A~gvl~al~~ 246 (330)
T PRK15395 170 GEPGHPDAEARTTYVIKELNDKGIKTEQLQ-LDTAM-WDTAQAKDKMDAWLSGPNANKIEVV-IANNDAMAMGAVEALKA 246 (330)
T ss_pred cCCCCchHHHHHHHHHHHHHhcCCCeeeee-cccCC-cCHHHHHHHHHHHHhhCcCCCeeEE-EECCchHHHHHHHHHHh
Confidence 322 2233456777888888887644321 11110 1122223444554332 23433 34555666788888888
Q ss_pred cCC
Q 008904 241 LGM 243 (549)
Q Consensus 241 ~g~ 243 (549)
.|+
T Consensus 247 ~Gl 249 (330)
T PRK15395 247 HNK 249 (330)
T ss_pred cCC
Confidence 886
|
|
| >cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.014 Score=55.37 Aligned_cols=205 Identities=11% Similarity=0.001 Sum_probs=113.9
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.. ..+......++.-+.++ .|+.+.+. .+..++..-.+....+...++.++|--.+......
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~gy~v~~~--~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~ 70 (269)
T cd06293 1 TIGLVVPDIANPFFAELADAVEEEADA--------RGLSLVLC--ATRNRPERELTYLRWLDTNHVDGLIFVTNRPDDGA 70 (269)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHHHHH--------CCCEEEEE--eCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHH
Confidence 478898853 32222334444444433 25666544 33335544444555566678888886332222233
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--ccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~~~~~~l~~~~~ 184 (549)
+..+. ..++|+|......+ +...+ .+.+.....+..+++.|...|-++++++...... .....+.|.+.++
T Consensus 71 ~~~~~-~~~~pvV~i~~~~~---~~~~~---~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~ 143 (269)
T cd06293 71 LAKLI-NSYGNIVLVDEDVP---GAKVP---KVFCDNEQGGRLATRHLARAGHRRIAFVGGPDALISARERYAGYREALA 143 (269)
T ss_pred HHHHH-hcCCCEEEECCCCC---CCCCC---EEEECCHHHHHHHHHHHHHCCCceEEEEecCcccccHHHHHHHHHHHHH
Confidence 33433 35799998754322 11122 3556777888889999988899999999754332 2345677888888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.|..+......... .........+.++.+. .++.|+. ++...+..+++.+.+.|...++-+-|.
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vp~di~i~ 210 (269)
T cd06293 144 EAHIPEVPEYVCFGD--YTREFGRAAAAQLLARGDPPTAIFA-ASDEIAIGLLEVLRERGLSIPGDMSLV 210 (269)
T ss_pred HcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCccceEEE
Confidence 877643211111111 1122333445554332 3454444 455566678888989887655544444
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.019 Score=54.47 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=116.5
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHH-HHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDD-INSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~-iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||+++|... ..+...+...+++ ..+.+ |+++. +.++..++..-.+....++..++++||= |.......
T Consensus 1 ~ig~~~~~~~---~~~~~~~~~~i~~~~~~~~----g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~ 71 (270)
T cd06308 1 VIGFSQCNLA---DPWRAAMNDEIQREASNYP----DVELI--IADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLT 71 (270)
T ss_pred CEEEEeeCCC---CHHHHHHHHHHHHHHHhcC----CcEEE--EEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhch
Confidence 4888887532 1222222233333 23222 45554 4455556666666666777778887764 33322222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCCc--ccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ--GRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~~--g~~~~~~l~~ 181 (549)
.....+...++|+|.+.... .+. .+...+..+....+...++.+... |-++++++...... .....+.+.+
T Consensus 72 ~~~~~~~~~~ipvV~~~~~~---~~~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~ 146 (270)
T cd06308 72 PVVEEAYRAGIPVILLDRKI---LSD--KYTAYIGADNYEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKE 146 (270)
T ss_pred HHHHHHHHCCCCEEEeCCCC---CCc--cceEEeecCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHH
Confidence 33334456899999875321 111 223345667777888888888775 88999999753322 2345677888
Q ss_pred HHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 182 KLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 182 ~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
.++++ |+++.... .. . .........++++-+ ...+. |++.+...+..+++.+++.|+. .+...++.+.
T Consensus 147 ~l~~~~~~~~~~~~-~~-~--~~~~~~~~~~~~~l~~~~~~~a-I~~~~d~~a~g~~~al~~~g~~-~dv~vvg~d~ 217 (270)
T cd06308 147 ALSKYPKIKIVAQQ-DG-D--WLKEKAEEKMEELLQANPDIDL-VYAHNDPMALGAYLAAKRAGRE-KEIKFIGIDG 217 (270)
T ss_pred HHHHCCCCEEEEec-CC-C--ccHHHHHHHHHHHHHhCCCCcE-EEeCCcHHHHHHHHHHHHcCCC-CCcEEEEecC
Confidence 88888 77654321 11 1 112222233444422 23454 3445556677788999999976 5555555543
|
Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail. |
| >cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.013 Score=55.76 Aligned_cols=206 Identities=11% Similarity=0.079 Sum_probs=110.0
Q ss_pred eEEEEEEeccCC----CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEc-CC
Q 008904 26 VLNVGAIFSFGT----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM-ETDTLAIVG-PQ 99 (549)
Q Consensus 26 ~i~IG~l~~~~~----~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aiiG-p~ 99 (549)
.=.||+++|... .....+...+.-++++.-+. .|+++.+...+. +. .+.+.+.+ .+++++||- +.
T Consensus 3 s~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~----~g~~~~v~~~~~--~~---~~~~~~~l~~~~~dgiii~~~ 73 (275)
T cd06295 3 TDTIALVVPEPHERDQSFSDPFFLSLLGGIADALAE----RGYDLLLSFVSS--PD---RDWLARYLASGRADGVILIGQ 73 (275)
T ss_pred ceEEEEEecCccccccccCCchHHHHHHHHHHHHHH----cCCEEEEEeCCc--hh---HHHHHHHHHhCCCCEEEEeCC
Confidence 346899998621 11222333333333333222 256666654332 21 23344444 458887763 22
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~ 177 (549)
... ... ...+...++|+|.+....+ +..+ ..+.+.....+...++.+...|.++++++..+.. .+....+
T Consensus 74 ~~~-~~~-~~~~~~~~ipvV~~~~~~~---~~~~---~~V~~d~~~~g~~~a~~l~~~g~~~i~~i~~~~~~~~~~~r~~ 145 (275)
T cd06295 74 HDQ-DPL-PERLAETGLPFVVWGRPLP---GQPY---CYVGSDNVGGGRLATEHLLARGRRRIAFLGGPQDMPEGEERLE 145 (275)
T ss_pred CCC-hHH-HHHHHhCCCCEEEECCccC---CCCC---CEEEECcHHHHHHHHHHHHHCCCCeEEEEcCCCCcchhHHHHH
Confidence 222 222 3445678999998754322 1222 3355667778888999998899999999875432 2334567
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.|.+.+++.|..+......... .........+.++.++ .++.|+.. +...+..+++.+++.|...++-+.|
T Consensus 146 gf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~-~~~~a~g~~~~l~~~g~~ip~~i~i 218 (275)
T cd06295 146 GYREALAEAGLPLDPRLVAPGD--FTEESGRAAMRALLERGPDFDAVFAA-SDLMALGALRALREAGRRVPEDVAV 218 (275)
T ss_pred HHHHHHHHcCCCCChhhEEecc--CCHHHHHHHHHHHHhCCCCCCEEEEC-CcHHHHHHHHHHHHhCCCCccceEE
Confidence 7888888877543211111111 1122233444444333 34554443 4455667888888888754444433
|
This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang |
| >cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.014 Score=54.92 Aligned_cols=200 Identities=13% Similarity=0.063 Sum_probs=118.5
Q ss_pred EEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 29 VGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 29 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
||+++|.- .........+++.+.++ .|+++.+ .++..++..-.+...+++.++++++|....... ..+
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~~-~~~ 70 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE--------NGYQMLL--MNTNFSIEKEIEALELLARQKVDGIILLATTIT-DEH 70 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH--------CCCEEEE--EeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHH
Confidence 78888753 33323445566555554 2566544 444556666666677777889999886433322 234
Q ss_pred HHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC---CcccchHHHHHHHHh
Q 008904 108 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTALGDKLA 184 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~---~~g~~~~~~l~~~~~ 184 (549)
...+...++|+|......+ ..+ .+.++....+..+++.+...+-++++++.... ..+....+.|++.++
T Consensus 71 ~~~~~~~~ipvv~~~~~~~-----~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~ 142 (259)
T cd01542 71 REAIKKLNVPVVVVGQDYP-----GIS---SVVYDDYGAGYELGEYLAQQGHKNIAYLGVSESDIAVGILRKQGYLDALK 142 (259)
T ss_pred HHHHhcCCCCEEEEeccCC-----CCC---EEEECcHHHHHHHHHHHHHcCCCcEEEEcCCcccchhHHHHHHHHHHHHH
Confidence 4555667899999753211 122 34566777888899998888889999886432 122455677888888
Q ss_pred hcCe-EEEEEEccCCCCCCChhhHHHHHHHHhcCC-CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 185 EIRC-KISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 185 ~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
+.|. .+.... -. .........+.++.+.. +++|+. .+...+..+++.+++.|+..++-+.+..
T Consensus 143 ~~~~~~~~~~~-~~----~~~~~~~~~~~~~l~~~~~~~i~~-~~d~~a~g~~~~l~~~g~~vp~di~v~g 207 (259)
T cd01542 143 EHGICPPNIVE-TD----FSYESAYEAAQELLEPQPPDAIVC-ATDTIALGAMKYLQELGRRIPEDISVAG 207 (259)
T ss_pred HcCCChHHeee-cc----CchhhHHHHHHHHhcCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 8776 211111 11 11222234454544333 454444 4455677888888888886555555554
|
Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh |
| >cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.018 Score=54.58 Aligned_cols=200 Identities=13% Similarity=0.025 Sum_probs=113.5
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.- ..+-.....++.-+.++ . |+++.+.. +..++..-.+....++++++++||--.+......
T Consensus 1 ~igvi~p~~~~~~~~~~~~g~~~~a~~---~-----g~~~~~~~--~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~ 70 (268)
T cd06270 1 TIGLVVSDLDGPFFGPLLSGVESVARK---A-----GKHLIITA--GHHSAEKEREAIEFLLERRCDALILHSKALSDDE 70 (268)
T ss_pred CEEEEEccccCcchHHHHHHHHHHHHH---C-----CCEEEEEe--CCCchHHHHHHHHHHHHcCCCEEEEecCCCCHHH
Confidence 378899873 32323444555554444 2 45555433 3344444445555677788888886333222222
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--ccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~~~~~~l~~~~~ 184 (549)
+ ..+...++|+|.+....+ +..+++ +..+....++.+++.+...|-+++++|..+... .....+.|.+.++
T Consensus 71 ~-~~~~~~~ipvV~~~~~~~---~~~~~~---v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~ 143 (268)
T cd06270 71 L-IELAAQVPPLVLINRHIP---GLADRC---IWLDNEQGGYLATEHLIELGHRKIACITGPLTKEDARLRLQGYRDALA 143 (268)
T ss_pred H-HHHhhCCCCEEEEeccCC---CCCCCe---EEECcHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHHHHH
Confidence 3 334567999998753222 112232 446677778889999988899999999754322 2344567788888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
+.|+.+.....+... ....+....++++.+.. +++|+ +++...+..+++.+++.|+..++
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ip~ 205 (268)
T cd06270 144 EAGIALDESLIIEGD--FTEEGGYAAMQELLARGAPFTAVF-CANDEMAAGAISALREHGISVPQ 205 (268)
T ss_pred HcCCCCCcceEEECC--CCHHHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCC
Confidence 877654211111111 12233445555554443 45444 44455667788888888875444
|
Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi |
| >cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.027 Score=54.52 Aligned_cols=211 Identities=18% Similarity=0.118 Sum_probs=116.6
Q ss_pred EEEEeccC-C-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEcCCCchHH
Q 008904 29 VGAIFSFG-T-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 104 (549)
Q Consensus 29 IG~l~~~~-~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~aiiGp~~s~~~ 104 (549)
||+++|.. . .+-.....+++.+.++ .|+.+.+. ++..+..........++++ ++.+||=-..+...
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~--------~g~~v~~~--~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~ 71 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADD--------LGIELEVL--YAERDRFLMLQQARTILQRPDKPDALIFTNEKSVA 71 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHh--------cCCeEEEE--eCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccch
Confidence 78888764 2 2222333444444433 15555443 4455666666677788888 99887742222223
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCC-----C--CCC-CceEEccCCcHHHHHHHHHHHHHcCCcE--------EEEEEec
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLS-----P--LQY-PFFVQTAPNDLYLMSAIAEMVSYFGWGE--------VIAIFND 168 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls-----~--~~~-~~~~r~~ps~~~~~~ai~~~l~~~~W~~--------v~ii~~~ 168 (549)
......+...++|+|.+....+... . ..+ .++-.+.++....++.+++.|...+-++ ++++...
T Consensus 72 ~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~g~~~i~~i~~~ 151 (305)
T cd06324 72 PELLRLAEGAGVKLFLVNSGLTEAQARELGPPREKFPDWLGQLLPNDEEAGYLMAEALISQARSVQAPGGRIDLLAISGD 151 (305)
T ss_pred HHHHHHHHhCCCeEEEEecCCCcchhhcccccccccCceeeeeccCcHHHHHHHHHHHHHHhhcccCCCCceeEEEEeCC
Confidence 3334556678999998754322110 0 011 2244566778888888888887776653 7666533
Q ss_pred C--CcccchHHHHHHHHhhcC-eEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 169 D--DQGRNGVTALGDKLAEIR-CKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 169 ~--~~g~~~~~~l~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
. .......+.|++.+++.| ..+... .... .........++++.+. ..+.|+ +.+...+..+++++++.|+
T Consensus 152 ~~~~~~~~R~~Gf~~~~~~~g~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~ 226 (305)
T cd06324 152 PTTPAAILREAGLRRALAEHPDVRLRQV--VYAG--WSEDEAYEQAENLLKRYPDVRLIW-AANDQMAFGALRAAKEAGR 226 (305)
T ss_pred CCChHHHHHHHHHHHHHHHCCCceEeee--ecCC--CCHHHHHHHHHHHHHHCCCccEEE-ECCchHHHHHHHHHHHcCC
Confidence 2 223345667788888876 333221 1111 1222333445554333 345443 4455666788899999997
Q ss_pred CCCC-eEEEEeC
Q 008904 244 MDSG-YVWIATT 254 (549)
Q Consensus 244 ~~~~-~~~i~~~ 254 (549)
..++ ...++.+
T Consensus 227 ~vp~di~vig~D 238 (305)
T cd06324 227 KPGRDVLFGGVN 238 (305)
T ss_pred CcCCCEEEEecC
Confidence 6443 3344333
|
This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.03 Score=53.70 Aligned_cols=199 Identities=10% Similarity=0.044 Sum_probs=108.3
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
.||+++|.. ..+-.....+++-+.++ . |+.+. +.++..++..-.+...+++..++.+||- +..+....
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~ 70 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKE---L-----GAEVI--VQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALA 70 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHH---c-----CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHH
Confidence 488999853 22222333444444333 1 44444 4555556666666667778888888774 33333223
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc------CCcEEEEEEecCC--cccchHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF------GWGEVIAIFNDDD--QGRNGVT 177 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~------~W~~v~ii~~~~~--~g~~~~~ 177 (549)
.....+...++|+|......+ +....+ .+..+....++.+++.+... |-++++++..+.. ......+
T Consensus 71 ~~l~~l~~~~ipvV~~~~~~~---~~~~~~--~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~l~g~~~~~~~~~R~~ 145 (288)
T cd01538 71 SAVEKAADAGIPVIAYDRLIL---NSNVDY--YVSFDNEKVGELQGQALVDGLGAKGKPPGNIELIAGSPTDNNAKLFFN 145 (288)
T ss_pred HHHHHHHHCCCCEEEECCCCC---CCCcce--EEEeChHHHHHHHHHHHHHHHhhcCCCCceEEEEECCCCCchHHHHHH
Confidence 334445668999998754322 111222 23445555667677776555 7889998875432 2233456
Q ss_pred HHHHHHhhcC----eEEEEEEccCCCCCCChhhHHHHHHHHhcCC---CeEEEEEcchHHHHHHHHHHHHcCCCC
Q 008904 178 ALGDKLAEIR----CKISYKSALPPDQSVTETDVRNELVKVRMME---ARVIVVHGYSRTGLMVFDVAQRLGMMD 245 (549)
Q Consensus 178 ~l~~~~~~~g----~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~viil~~~~~~~~~il~~a~~~g~~~ 245 (549)
.|.+.+++.+ +.+... ..... .+...-...++++.+.. +++|+ +.....+..+++.+++.|+..
T Consensus 146 gf~~~l~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~~~I~-~~~d~~a~g~~~al~~~g~~~ 216 (288)
T cd01538 146 GAMSVLKPLIDSGKITIVGE-VATPD--WDPETAQKRMENALTANYNKVDGVL-AANDGTAGGAIAALKAAGLAG 216 (288)
T ss_pred HHHHHHHhccccCCeeEEec-cccCC--CCHHHHHHHHHHHHHhCCCCccEEE-eCCcHHHHHHHHHHHHcCCCC
Confidence 7778888876 443321 11111 11222234444443332 34333 344556677888888888754
|
Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. |
| >COG1609 PurR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.021 Score=55.88 Aligned_cols=203 Identities=9% Similarity=0.009 Sum_probs=126.3
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
....-.||+++|.- ..+-.....+++.+.++ .|+.+-+ ..+..++..-.+....+..++|+++|=.. .
T Consensus 55 ~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~--------~gy~~~l--~~~~~~~~~e~~~~~~l~~~~vdGiIi~~-~ 123 (333)
T COG1609 55 TGRTKTIGLVVPDITNPFFAEILKGIEEAARE--------AGYSLLL--ANTDDDPEKEREYLETLLQKRVDGLILLG-E 123 (333)
T ss_pred hCCCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEec-C
Confidence 44677899999953 22222334444444443 2455444 44444555555555666677999988643 3
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEec--CCcccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~--~~~g~~~~~~l 179 (549)
.........+...++|+|......+ + +.+-.+..++..-++.+++.|...|-+++++|... ...+....+.+
T Consensus 124 ~~~~~~~~~l~~~~~P~V~i~~~~~---~---~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf 197 (333)
T COG1609 124 RPNDSLLELLAAAGIPVVVIDRSPP---G---LGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGY 197 (333)
T ss_pred CCCHHHHHHHHhcCCCEEEEeCCCc---c---CCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHH
Confidence 3334445666777999998754433 2 22234456788888999999999999999999976 33456778889
Q ss_pred HHHHhhcCeEE--EEEEccCCCCCCChhhHHHHHHHHhcCC---CeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 180 GDKLAEIRCKI--SYKSALPPDQSVTETDVRNELVKVRMME---ARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 180 ~~~~~~~g~~v--~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
.+.+++.|+.. .....-. ....+-...+.++.... ++ .|++++...+..+++.+.+.|+..++
T Consensus 198 ~~al~~~~~~~~~~~i~~~~----~~~~~g~~~~~~ll~~~~~~pt-Aif~~nD~~Alg~l~~~~~~g~~vP~ 265 (333)
T COG1609 198 RAALREAGLPINPEWIVEGD----FSEESGYEAAERLLARGEPRPT-AIFCANDLMALGALRALRELGLRVPE 265 (333)
T ss_pred HHHHHHCCCCCCcceEEecC----CChHHHHHHHHHHHhcCCCCCc-EEEEcCcHHHHHHHHHHHHcCCCCCC
Confidence 99999999875 2221111 11223333444444322 44 44556667788899999999987554
|
|
| >cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.024 Score=53.50 Aligned_cols=204 Identities=10% Similarity=0.030 Sum_probs=113.9
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|... .+-.....+++-+.++ .|+.+. +.+...++..-.+....++..++++||-.........
T Consensus 1 ~igvi~~~~~~~~~~~~~~~i~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~ 70 (267)
T cd06283 1 LIGVIVADITNPFSSLVLKGIEDVCRA--------HGYQVL--VCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNKEL 70 (267)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH--------cCCEEE--EEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCChHH
Confidence 3788887642 2223445555555554 145553 3444445555555556677778887774222222223
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cc--cchHHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QG--RNGVTALGDKL 183 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g--~~~~~~l~~~~ 183 (549)
+ ..+...++|+|.+....+ ....+ .+.......+..+++.+...|-++++++..... .. ....+.+.+.+
T Consensus 71 l-~~~~~~~ipvV~~~~~~~---~~~~~---~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~g~~~~~ 143 (267)
T cd06283 71 Y-QRLAKNGKPVVLVDRKIP---ELGVD---TVTLDNYEAAKEAVDHLIEKGYERILFVTEPLDEISPRMERYEGFKEAL 143 (267)
T ss_pred H-HHHhcCCCCEEEEcCCCC---CCCCC---EEEeccHHHHHHHHHHHHHcCCCcEEEEecCccccccHHHHHHHHHHHH
Confidence 3 334567999999754321 11222 233456667888889998889999999975432 11 24556778888
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
++.|............ .+.......++++.++. ++.|+. .+...+..+++.+++.|+..++-+.|
T Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~~l~~~g~~vp~di~v 210 (267)
T cd06283 144 AEHGIGVNEELIEIDD--EDADELDERLRQLLNKPKKKTAIFA-ANGLILLEVLKALKELGIRIPEDVGL 210 (267)
T ss_pred HHcCCCCCcceeEecc--cchHHHHHHHHHHHcCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCccceEE
Confidence 8777432111100111 11233445666665443 344444 44555667888888888764444444
|
Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b |
| >cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0088 Score=56.72 Aligned_cols=201 Identities=9% Similarity=-0.013 Sum_probs=113.3
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.. ..+-.....+++.+.++ .|+.+ .+.++..++....+....+..+++.++|--.+......
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~--------~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~ 70 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRA--------AGYSL--LIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPE 70 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHH--------cCCEE--EEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHH
Confidence 478999853 33333445555555554 24554 34455556655555556666778888885333222244
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 184 (549)
+...+...++|+|......+ . ..++ +..+...-+...++.+...|-++++++..... .+....+.+.+.++
T Consensus 71 ~~~~~~~~~ipvV~i~~~~~--~--~~~~---V~~d~~~~g~~a~~~l~~~G~~~i~~l~~~~~~~~~~~R~~Gf~~~~~ 143 (269)
T cd06281 71 LVDALASLDLPIVLLDRDMG--G--GADA---VLFDHAAGMRQAVEYLISLGHRRIALVGGGSNTRPGRERLEGYKAAFA 143 (269)
T ss_pred HHHHHHhCCCCEEEEecccC--C--CCCE---EEECcHHHHHHHHHHHHHCCCcEEEEecCccccccHHHHHHHHHHHHH
Confidence 45566678999998754322 1 1232 33445555566777777779999998875432 22344567788888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeE
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 249 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~ 249 (549)
+.|+.+......... . .......+.++.. ..++.|+ +.+...+..+++.+.+.|+..++-+
T Consensus 144 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ip~dv 206 (269)
T cd06281 144 AAGLPPDPALVRLST--P-AASGFDATRALLALPDRPTAII-AGGTQVLVGVLRALREAGLRIPRDL 206 (269)
T ss_pred HcCCCCCHHHeecCc--H-HHHHHHHHHHHHcCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCcce
Confidence 887654211111111 1 1222334444432 2356665 3455566678888888887654433
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.033 Score=52.49 Aligned_cols=202 Identities=9% Similarity=0.039 Sum_probs=111.9
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
.||+++|... ..-.....+++-+.++ .|+.+.+...+. .++..-.+....+++++++++|- +..... .
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiii~~~~~~~-~ 70 (264)
T cd01574 1 TIGVVTTDLALHGPSSTLAAIESAARE--------AGYAVTLSMLAE-ADEEALRAAVRRLLAQRVDGVIVNAPLDDA-D 70 (264)
T ss_pred CEEEEeCCCCcccHHHHHHHHHHHHHH--------CCCeEEEEeCCC-CchHHHHHHHHHHHhcCCCEEEEeCCCCCh-H
Confidence 3789998642 2222334444444444 256665553322 23344444555566778888874 332222 2
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--ccchHHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVTALGDKL 183 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~~~~~~l~~~~ 183 (549)
.+.. ....++|+|...... . .. +..+.......++.+++.+...|-++++++..+... .....+.|.+.+
T Consensus 71 ~~~~-~~~~~ipvv~~~~~~---~-~~---~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l 142 (264)
T cd01574 71 AALA-AAPADVPVVFVDGSP---S-PR---VSTVSVDQEGGARLATEHLLELGHRTIAHVAGPEEWLSARARLAGWRAAL 142 (264)
T ss_pred HHHH-HHhcCCCEEEEeccC---C-CC---CCEEEeCcHHHHHHHHHHHHHCCCCEEEEEecCCccchHHHHHHHHHHHH
Confidence 3333 346789999975421 1 11 223455667788889999988999999998754332 223456677788
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC-CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
++.|+.+..... .. .........++++..+. ++.| ++++...+..+++.+++.|...++-+-|+
T Consensus 143 ~~~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~ai-~~~~d~~a~g~~~~~~~~g~~ip~~i~ii 207 (264)
T cd01574 143 EAAGIAPPPVLE--GD--WSAESGYRAGRELLREGDPTAV-FAANDQMALGVLRALHELGLRVPDDVSVV 207 (264)
T ss_pred HHCCCCcceeee--cC--CCHHHHHHHHHHHHhCCCCcEE-EEcCcHHHHHHHHHHHHcCCCCccceEEe
Confidence 777765542211 11 11223334455554333 4443 34455667778888888886544433333
|
Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b |
| >cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.038 Score=52.38 Aligned_cols=196 Identities=11% Similarity=-0.031 Sum_probs=110.7
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||+++|.. ..+-.....+++-+.++. |+.+.+...+...+...-.+....+++.++.+||- |.......
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~ 72 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRL--------GVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLN 72 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHH
Confidence 589999863 222223344555544432 45554432222123444445566677778888874 33322222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCC-----cEEEEEEecCC--cccchHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW-----GEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W-----~~v~ii~~~~~--~g~~~~~~ 178 (549)
.+ ..+...++|+|....... +. .....+..+....++.+++++...+- ++++++..... ......+.
T Consensus 73 ~~-~~~~~~giPvV~~~~~~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~~i~~l~g~~~~~~~~~R~~g 146 (268)
T cd06306 73 EI-LQQVAASIPVIALVNDIN---SP--DITAKVGVSWYEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKAVEKG 146 (268)
T ss_pred HH-HHHHHCCCCEEEeccCCC---Cc--ceeEEecCChHHHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCchHHHHHHH
Confidence 23 345678999998632211 11 12234566777778888888877665 89999975332 23455677
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
+.+.+++.++++.... ... .+...-...++++.+. ..++|+. ....+..+++.+++.|+
T Consensus 147 ~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~~i~~--~d~~a~~~~~~l~~~g~ 207 (268)
T cd06306 147 FRDALAGSAIEISAIK--YGD--TGKEVQRKLVEEALEAHPDIDYIVG--SAVAAEAAVGILRQRGL 207 (268)
T ss_pred HHHHHhhcCcEEeeec--cCC--ccHHHHHHHHHHHHHhCCCcCEEee--cchhhhHHHHHHHhcCC
Confidence 8888888888765421 111 1222333445554322 4566653 35667778888888886
|
TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport. |
| >cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.02 Score=54.04 Aligned_cols=205 Identities=10% Similarity=0.045 Sum_probs=114.2
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.. ..+-.....++.-+.++ .|+.+. +.++..++..-.+....+...++++||=..+......
T Consensus 1 ~igvi~p~~~~~~~~~~~~gi~~~~~~--------~~~~~~--~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~ 70 (265)
T cd06285 1 TIGVLVPRLTDTVMATMYEGIEEAAAE--------RGYSTF--VANTGDNPDAQRRAIEMLLDRRVDGLILGDARSDDHF 70 (265)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCChHH
Confidence 379999863 22222333444444333 245553 3444445555455555667778887773222222233
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 184 (549)
+ ..+...++|+|......+ .+++ +..+...-+...++.|...|-++++++..+.. ......+.|.+.++
T Consensus 71 ~-~~~~~~~iPvv~~~~~~~-----~~~~---V~~d~~~ag~~a~~~L~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~ 141 (265)
T cd06285 71 L-DELTRRGVPFVLVLRHAG-----TSPA---VTGDDVLGGRLATRHLLDLGHRRIAVLAGPDYASTARDRLAGFRAALA 141 (265)
T ss_pred H-HHHHHcCCCEEEEccCCC-----CCCE---EEeCcHHHHHHHHHHHHHCCCccEEEEeCCcccccHHHHHHHHHHHHH
Confidence 3 344668999998753221 1232 34566677788888888889999999975432 33455677788888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCC-CeEEEEeC
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDS-GYVWIATT 254 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~-~~~~i~~~ 254 (549)
+.|+.+.....+... .........++++... .++. |++.+...+..+++.+++.|+..+ +...++.+
T Consensus 142 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d 211 (265)
T cd06285 142 EAGIEVPPERIVYSG--FDIEGGEAAAEKLLRSDSPPTA-IFAVNDFAAIGVMGAARDRGLRVPDDVALVGYN 211 (265)
T ss_pred HcCCCCChhhEEeCC--CCHHHHHHHHHHHHcCCCCCCE-EEEcCcHHHHHHHHHHHHcCCCCCcceEEEeec
Confidence 887654221111111 1122223445555333 2344 444555666788999999887543 33344433
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >PRK10703 DNA-binding transcriptional repressor PurR; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.018 Score=56.88 Aligned_cols=209 Identities=10% Similarity=0.013 Sum_probs=114.0
Q ss_pred ceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 25 EVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 25 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
..-.||+++|... .+-.....+++-+.++ .|+.+. +.++..++..-.+....++.+++++||--.....
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 127 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQ--------KGYTLI--LCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYP 127 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 4458999998742 2222333444444443 144443 3344455555555566677778888774222222
Q ss_pred HHHHHHhhhh-cCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC--CcccchHHHHH
Q 008904 104 AHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 180 (549)
Q Consensus 104 ~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~--~~g~~~~~~l~ 180 (549)
...+. .+.. .++|+|.+....+ +..+.. .+.+.....+...++.|...|-+++++|.... .......+.|.
T Consensus 128 ~~~~~-~l~~~~~iPvV~~d~~~~---~~~~~~--~v~~d~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~ 201 (341)
T PRK10703 128 EPLLA-MLEEYRHIPMVVMDWGEA---KADFTD--AIIDNAFEGGYLAGRYLIERGHRDIGVIPGPLERNTGAGRLAGFM 201 (341)
T ss_pred HHHHH-HHHhcCCCCEEEEecccC---CcCCCC--eEEECcHHHHHHHHHHHHHCCCCcEEEEeCCccccchHHHHHHHH
Confidence 23333 3344 6999998743221 111112 23444455677788888778999999986432 23344567788
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+++.|+.+......... ....+....++++... .++.|+ +++...+..+++.+.+.|...++-+.|.
T Consensus 202 ~~l~~~gi~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~a~g~~~al~~~g~~ip~dv~vv 272 (341)
T PRK10703 202 KAMEEANIKVPEEWIVQGD--FEPESGYEAMQQILSQKHRPTAVF-CGGDIMAMGAICAADEMGLRVPQDISVI 272 (341)
T ss_pred HHHHHcCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8888888764321111111 1122334455554433 345554 4455566778889988887555444443
|
|
| >PRK10014 DNA-binding transcriptional repressor MalI; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.024 Score=55.88 Aligned_cols=205 Identities=10% Similarity=0.029 Sum_probs=113.4
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
....-.||+++|.. ..+......++.-+.+ +. |+.+-+ .++..++....+....++.+++++||-....
T Consensus 61 ~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~---~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 61 GGQSGVIGLIVRDLSAPFYAELTAGLTEALE---AQ-----GRMVFL--LQGGKDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred cCCCCEEEEEeCCCccchHHHHHHHHHHHHH---Hc-----CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34456899999863 2222233344444333 32 444433 3334455444455556667788888842222
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--ccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~~~~~~l 179 (549)
.........+...++|+|...... ....+++ +.......+..+++.|...|.++++++..+... .....+.+
T Consensus 131 ~~~~~~~~~l~~~~iPvV~~~~~~---~~~~~~~---V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf 204 (342)
T PRK10014 131 GSSDDLREMAEEKGIPVVFASRAS---YLDDVDT---VRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGY 204 (342)
T ss_pred CCcHHHHHHHhhcCCCEEEEecCC---CCCCCCE---EEeCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccHHHHHHHH
Confidence 222334455567899999874321 1112232 455667778888888888999999999654322 23355678
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
.+.+++.|+.+.....+... .........++++.+.. ++.|+ +.+...+..+++.+.+.|+..+
T Consensus 205 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~~l~~~g~~vp 270 (342)
T PRK10014 205 CATLLKFGLPFHSEWVLECT--SSQKQAAEAITALLRHNPTISAVV-CYNETIAMGAWFGLLRAGRQSG 270 (342)
T ss_pred HHHHHHcCCCCCcceEecCC--CChHHHHHHHHHHHcCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCC
Confidence 88888888754321111111 11222234444543333 34444 4555666778888888887544
|
|
| >COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.09 Score=51.35 Aligned_cols=216 Identities=12% Similarity=0.090 Sum_probs=128.3
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCC
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQS 100 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~ 100 (549)
......+||++.+... ..+..++..++++.-+.- |....+...|...++..-++.+.+++.+++.+|+ .|.+
T Consensus 29 a~~~~~~i~~~~~~~~---~~f~~~~~~g~~~~a~~~----g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d 101 (322)
T COG1879 29 AAAAGKTIGVVVPTLG---NPFFQAVRKGAEAAAKKL----GVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVD 101 (322)
T ss_pred HhccCceEEEEeccCC---ChHHHHHHHHHHHHHHHc----CCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3444488999998753 234455555555444332 2356677777778888888889999989997776 5888
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-cC-CcEEEEEEecC--CcccchH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FG-WGEVIAIFNDD--DQGRNGV 176 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~-W~~v~ii~~~~--~~g~~~~ 176 (549)
+........-+...+||+|.+....+.- ......+.......++..++++.+ ++ .-++.++.... .......
T Consensus 102 ~~~~~~~v~~a~~aGIpVv~~d~~~~~~----~~~~~~vg~dn~~~G~~~a~~l~~~~~~~g~v~~~~g~~~~~~~~~R~ 177 (322)
T COG1879 102 PDALTPAVKKAKAAGIPVVTVDSDIPGP----GDRVAYVGSDNYKAGRLAAEYLAKALGGKGKVVVLVGSPGNSSAEERV 177 (322)
T ss_pred hhhhHHHHHHHHHCCCcEEEEecCCCCC----CceeEEEecCcHHHHHHHHHHHHHHhCCCCeEEEEecCCCCchHHHHH
Confidence 8888888888899999999975432211 122333334566666666777654 33 23455555332 2334556
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch-HHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~-~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
..+.+.+++.+..+........+ .+.+.-......+-...+++-.+++.. ..+.-..+.+++.|... .+++.
T Consensus 178 ~G~~~~l~~~~~~~~v~~~~~~~--~~~~~a~~~~~~~L~~~pdi~~i~~~~d~~a~ga~~A~~~~g~~~--~v~v~ 250 (322)
T COG1879 178 KGFRDALKEHPPDIEVVDVQTGD--WDRDKALEVMEDLLAANPDIDGIYAANDGMALGAIQALKAAGRKG--DVVVV 250 (322)
T ss_pred hhHHHHHHhCCCcEEEeeccCCc--ccHHHHHHHHHHHHHhCCCceEEEECCchhHHHHHHHHHHcCCCC--ceEEE
Confidence 77888888876422222222211 123333445555555666766655554 34444556666677643 44544
|
|
| >cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.032 Score=52.69 Aligned_cols=206 Identities=10% Similarity=0.036 Sum_probs=114.7
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
.||+++|... ......+...+++.-+. .|+.+.+ .++..++..-.+....++.+++++||-.........+
T Consensus 1 ~igvi~~~~~---~~~~~~~~~~~~~~~~~----~g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~ 71 (264)
T cd06274 1 TIGLIIPDLE---NRSFARIAKRLEALARE----RGYQLLI--ACSDDDPETERETVETLIARQVDALIVAGSLPPDDPY 71 (264)
T ss_pred CEEEEecccc---CchHHHHHHHHHHHHHH----CCCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchHHH
Confidence 3789998642 12233333334433322 2455544 3444466555566667778889888753332222223
Q ss_pred HHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHhh
Q 008904 108 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLAE 185 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~~ 185 (549)
. .+...++|+|.+....+ +...++ +.......+..+++.+.+.|-++++++..... ......+.+.+.+++
T Consensus 72 ~-~~~~~~ipvV~~~~~~~---~~~~~~---V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~ 144 (264)
T cd06274 72 Y-LCQKAGLPVVALDRPGD---PSRFPS---VVSDNRDGAAELTRELLAAPPEEVLFLGGLPELSPSRERLAGFRQALAD 144 (264)
T ss_pred H-HHHhcCCCEEEecCccC---CCCCCE---EEEccHHHHHHHHHHHHHCCCCcEEEEeCCCcccchHHHHHHHHHHHHH
Confidence 3 34668899998743321 112233 34456666777888888888899999875432 234556788888888
Q ss_pred cCeEEEEEEccCCCCCCChhhHHHHHHHHhcC---CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 186 IRCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 186 ~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.|..+......... .+.......++++-.. .++.|+ +.+...+..+++.+++.|+..++-+.|+
T Consensus 145 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~ip~dv~v~ 211 (264)
T cd06274 145 AGLPVQPDWIYAEG--YSPESGYQLMAELLARLGRLPRALF-TTSYTLLEGVLRFLRERPGLAPSDLRIA 211 (264)
T ss_pred cCCCCCcceeecCC--CChHHHHHHHHHHHccCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCcceEEE
Confidence 87542211111111 1122233445554332 245554 4455567778888888887655545544
|
Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor |
| >cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.069 Score=51.36 Aligned_cols=212 Identities=11% Similarity=0.038 Sum_probs=114.9
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~ 106 (549)
|||+++|... ..+...+..++++.-++ .|+++.+. .+...++..-.+....++.+++++||= +........
T Consensus 1 ~i~~i~~~~~---~~~~~~~~~gi~~~a~~----~g~~~~~~-~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~ 72 (294)
T cd06316 1 KAAIVMHTSG---SDWSNAQVRGAKDEFAK----LGIEVVAT-TDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAA 72 (294)
T ss_pred CeEEEecCCC---ChHHHHHHHHHHHHHHH----cCCEEEEe-cCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhH
Confidence 5888887532 12333444444443332 25666433 344556666666667777888887764 433222233
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCCc--ccchHHHHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ--GRNGVTALGDK 182 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~~--g~~~~~~l~~~ 182 (549)
....+...++|+|.+....+.... .-.++..+..+....+..+++++... +-++++++..+.+. .....+.+.+.
T Consensus 73 ~i~~~~~~~iPvV~~~~~~~~~~~-~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~ 151 (294)
T cd06316 73 AYKKVAEAGIKLVFMDNVPSGLEH-GKDYAGIVTDDNYGNGQIAADALAKALPGKGKVGLIYHGADYFVTNQRDQGFKET 151 (294)
T ss_pred HHHHHHHcCCcEEEecCCCccccc-CcceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCcccHHHHHHHHHHH
Confidence 345566789999987543222211 01233345566677778888888776 78899999754332 33445677777
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+++.+..+....... . .........++++... .++.|+ +.+...+..+++.+++.|+ .+...++.+
T Consensus 152 l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~--~di~vvg~d 219 (294)
T cd06316 152 IKKNYPDITIVAEKG-I--DGPSKAEDIANAMLTQNPDLKGIY-AVWDVPAEGVIAALRAAGR--DDIKVTTVD 219 (294)
T ss_pred HHHhCCCcEEEeecC-C--cchhHHHHHHHHHHHhCCCeeEEE-eCCCchhHHHHHHHHHcCC--CCceEEEeC
Confidence 776553222111111 1 1011222344444322 344444 3445567788999999886 344455444
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.019 Score=54.44 Aligned_cols=207 Identities=11% Similarity=0.060 Sum_probs=114.4
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
.||++.|.. ..+-.....+++-+.++ .|+++.+ .++..++..-.+....++.++++++|- +.... ..
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~ 69 (270)
T cd06296 1 LIGLVFPDLDSPWASEVLRGVEEAAAA--------AGYDVVL--SESGRRTSPERQWVERLSARRTDGVILVTPELT-SA 69 (270)
T ss_pred CeEEEECCCCCccHHHHHHHHHHHHHH--------cCCeEEE--ecCCCchHHHHHHHHHHHHcCCCEEEEecCCCC-hH
Confidence 378888763 33333444555444444 2555544 444444444444555667778888764 33322 22
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKL 183 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~ 183 (549)
....+...++|+|.+..... ....++ .+.++....++..++.+...|.++++++..... ......+.|.+.+
T Consensus 70 -~~~~~~~~~ipvV~i~~~~~--~~~~~~---~v~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~ 143 (270)
T cd06296 70 -QRAALRRTGIPFVVVDPAGD--PDADVP---SVGATNWAGGLAATEHLLELGHRRIGFITGPPDLLCSRARLDGYRAAL 143 (270)
T ss_pred -HHHHHhcCCCCEEEEecccC--CCCCCC---EEEeCcHHHHHHHHHHHHHcCCCcEEEEcCCCcchhHHHHHHHHHHHH
Confidence 24445668999999754321 111223 345667777888888888889999999875322 2344567788888
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
++.++.+......... ...+.....++++.+. .+++|+ +.+...+..+++.+++.|...++ ...+..+
T Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~d 214 (270)
T cd06296 144 AEAGIPVDPALVREGD--FSTESGFRAAAELLALPERPTAIF-AGNDLMALGVYEAARERGLRIPEDLSVVGFD 214 (270)
T ss_pred HHcCCCCChHHheeCC--CCHHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHhCCCCCCceEEEEEC
Confidence 8777644321111111 1122333444444333 234443 44555667788888888875443 3444443
|
This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >PRK11303 DNA-binding transcriptional regulator FruR; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.039 Score=54.03 Aligned_cols=206 Identities=10% Similarity=-0.025 Sum_probs=113.8
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC-c
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS-A 101 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~-s 101 (549)
...-.||+++|.. ..+-.....+++.+.++ .|+.+.+. .+..++..-.+....++.+++++||-... .
T Consensus 59 ~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~--------~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 128 (328)
T PRK11303 59 GRTRSIGLIIPDLENTSYARIAKYLERQARQ--------RGYQLLIA--CSDDQPDNEMRCAEHLLQRQVDALIVSTSLP 128 (328)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 3456899999853 22222233444444333 25666553 33334444444455566778888775322 2
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.....+. .+...++|+|...... ....+++ +..++...+..+++.|...|-++|+++..... ......+.|
T Consensus 129 ~~~~~~~-~l~~~~iPvV~v~~~~---~~~~~~~---V~~d~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~R~~Gf 201 (328)
T PRK11303 129 PEHPFYQ-RLQNDGLPIIALDRAL---DREHFTS---VVSDDQDDAEMLAESLLKFPAESILLLGALPELSVSFEREQGF 201 (328)
T ss_pred CChHHHH-HHHhcCCCEEEECCCC---CCCCCCE---EEeCCHHHHHHHHHHHHHCCCCeEEEEeCccccccHHHHHHHH
Confidence 2222233 3346799999874321 1122232 34566666777888888889999999975432 334556788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+.... ... ....+-...++++.+. .++.|+. .+...+..+++++.+.|+..++-+-|
T Consensus 202 ~~al~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~disv 270 (328)
T PRK11303 202 RQALKDDPREVHYLY--ANS--FEREAGAQLFEKWLETHPMPDALFT-TSYTLLQGVLDVLLERPGELPSDLAI 270 (328)
T ss_pred HHHHHHcCCCceEEE--eCC--CChHHHHHHHHHHHcCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 888888887543221 111 1122223345554433 3455444 44456677888888988765544433
|
|
| >cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.02 Score=54.04 Aligned_cols=201 Identities=10% Similarity=0.017 Sum_probs=108.2
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
.||+++|... ..+...+...+++.-++. |+.+.+ .++..++..-.+....+.+++++++|--.+......+
T Consensus 1 ~i~vi~~~~~---~~~~~~~~~gi~~~~~~~----gy~~~~--~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~ 71 (265)
T cd06290 1 TIGVLTQDFA---SPFYGRILKGMERGLNGS----GYSPII--ATGHWNQSRELEALELLKSRRVDALILLGGDLPEEEI 71 (265)
T ss_pred CEEEEECCCC---CchHHHHHHHHHHHHHHC----CCEEEE--EeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHH
Confidence 3788887632 122333333343332222 455544 3444555544445556677788888743222222223
Q ss_pred HHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHhh
Q 008904 108 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLAE 185 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~~ 185 (549)
..+ . .++|+|......+ +...+ .+..+....+..+++.+...|-++++++..+.. ......+.+.+.+.+
T Consensus 72 ~~~-~-~~iPvV~i~~~~~---~~~~~---~V~~d~~~a~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~ 143 (265)
T cd06290 72 LAL-A-EEIPVLAVGRRVP---GPGAA---SIAVDNFQGGYLATQHLIDLGHRRIAHITGPRGHIDARDRLAGYRKALEE 143 (265)
T ss_pred HHH-h-cCCCEEEECCCcC---CCCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCccccchhhHHHHHHHHHHHH
Confidence 333 2 4899998754321 11122 244566777788888888789999999875422 233456677778877
Q ss_pred cCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCe
Q 008904 186 IRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248 (549)
Q Consensus 186 ~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~ 248 (549)
.|+.+.....+... .........++++.+.. .+.|+ +++...+..+++.+++.|+..++.
T Consensus 144 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~aii-~~~~~~a~~~~~~l~~~g~~ip~d 205 (265)
T cd06290 144 AGLEVQPDLIVQGD--FEEESGLEAVEELLQRGPDFTAIF-AANDQTAYGARLALYRRGLRVPED 205 (265)
T ss_pred cCCCCCHHHEEecC--CCHHHHHHHHHHHHcCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCcc
Confidence 77653211111111 11222234455554332 45444 455566777888888888764443
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.021 Score=53.89 Aligned_cols=205 Identities=13% Similarity=0.053 Sum_probs=112.2
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.. ..+-.....++.-+.++. |+.+.+. ++..++..-......++..++++||-.........
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 70 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAA--------GYSTIIG--NSDENPETENRYLDNLLSQRVDGIIVVPHEQSAEQ 70 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHc--------CCEEEEE--eCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCChHH
Confidence 488999863 333334455555555441 4444443 34445554445555667778988885333222233
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 184 (549)
...+...++|+|......+ ...++++ .......+..+++.+...|-++|+++..... ......+.|.+.++
T Consensus 71 -~~~l~~~~ipvV~~~~~~~---~~~~~~v---~~d~~~~~~~~~~~l~~~g~~~I~~i~~~~~~~~~~~R~~gf~~~~~ 143 (265)
T cd06299 71 -LEDLLKRGIPVVFVDREIT---GSPIPFV---TSDPQPGMTEAVSLLVALGHKKIGYISGPQDTSTGRERLEAFRQACA 143 (265)
T ss_pred -HHHHHhCCCCEEEEecccC---CCCCCEE---EECcHHHHHHHHHHHHHcCCCcEEEEeCCCCcccHHHHHHHHHHHHH
Confidence 3444567999998754321 2223333 2344445556667777778899999865432 23344567888888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.|..+......... .........++++.+..++.|+ +.+...+..+++.+++.|+..++-+.|+
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~av~-~~~d~~a~gv~~al~~~g~~vp~dv~v~ 208 (265)
T cd06299 144 SLGLEVNEDLVVLGG--YSQESGYAGATKLLDQGATAII-AGDSMMTIGAIRAIHDAGLVIGEDISLI 208 (265)
T ss_pred HCCCCCChHhEEecC--cchHHHHHHHHHHHcCCCCEEE-EcCcHHHHHHHHHHHHhCCCCCcceeEE
Confidence 877532211111111 1122233445555444466544 4555567788888888887654444443
|
This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans |
| >cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.026 Score=53.28 Aligned_cols=190 Identities=12% Similarity=0.043 Sum_probs=105.5
Q ss_pred EEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 29 VGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 29 IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
||+++|... ++-.....++.-+.++ .|+.+.+...+. +. ...+...+++.++++++|--.+..... .
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~--------~g~~~~~~~~~~--~~-~~~~~i~~~~~~~vdgiii~~~~~~~~-~ 69 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQA--------RGYQPLLINTDD--DE-DLDAALRQLLQYRVDGVIVTSGTLSSE-L 69 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHH--------CCCeEEEEcCCC--CH-HHHHHHHHHHHcCCCEEEEecCCCCHH-H
Confidence 788887642 2222233343333322 256666554443 22 333445566777898888533322222 2
Q ss_pred HHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHhh
Q 008904 108 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLAE 185 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~~ 185 (549)
...+...++|+|......+ + +.+..+.++....+..+++.+...|-++++++..+.. ......+.|.+.+++
T Consensus 70 ~~~~~~~~ipvV~~~~~~~---~---~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~ 143 (266)
T cd06278 70 AEECRRNGIPVVLINRYVD---G---PGVDAVCSDNYEAGRLAAELLLAKGCRRIAFIGGPADTSTSRERERGFRDALAA 143 (266)
T ss_pred HHHHhhcCCCEEEECCccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCceEEEEcCCCcccchHHHHHHHHHHHHH
Confidence 4455667999999743221 1 1223456677888888999998889999999985433 334456778888888
Q ss_pred cCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHc
Q 008904 186 IRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRL 241 (549)
Q Consensus 186 ~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~ 241 (549)
.|..+.... .... ........+.++.+. .+++|+. .+...+..+++.+++.
T Consensus 144 ~~~~~~~~~-~~~~---~~~~~~~~~~~~l~~~~~~~~i~~-~~~~~a~~~~~~l~~~ 196 (266)
T cd06278 144 AGVPVVVEE-AGDY---SYEGGYEAARRLLASRPRPDAIFC-ANDLLAIGVMDAARQE 196 (266)
T ss_pred cCCChhhhc-cCCC---CHHHHHHHHHHHHhcCCCCCEEEE-cCcHHHHHHHHHHHHh
Confidence 877532211 1111 122233344444333 3454444 3444555677777664
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >PRK15408 autoinducer 2-binding protein lsrB; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.13 Score=50.53 Aligned_cols=198 Identities=12% Similarity=-0.050 Sum_probs=102.6
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+|+.+.... .++-.....+++-+.++ .|+++.+. ..+..+...-.+....++.+++.+|+- |.......
T Consensus 25 ~i~~v~k~~~~pf~~~~~~Gi~~aa~~--------~G~~v~~~-~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~ 95 (336)
T PRK15408 25 RIAFIPKLVGVGFFTSGGNGAKEAGKE--------LGVDVTYD-GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLC 95 (336)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHH--------hCCEEEEE-CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHH
Confidence 788888654 23222334455444443 25666542 223445555566777888889988875 44444444
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccC-CcHHHHHHHHHHHHHc---CCcEEEEEEecCCc--ccchHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP-NDLYLMSAIAEMVSYF---GWGEVIAIFNDDDQ--GRNGVTAL 179 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~p-s~~~~~~ai~~~l~~~---~W~~v~ii~~~~~~--g~~~~~~l 179 (549)
....-+...+||+|++.+..+. +. . .+-+.. ++...+..+++++.+. +-.+++++...... .....+.+
T Consensus 96 ~~l~~a~~~gIpVV~~d~~~~~--~~--~-~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~~~~~~r~~g~ 170 (336)
T PRK15408 96 PALKRAMQRGVKVLTWDSDTKP--EC--R-SYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVTDQNQWVKEA 170 (336)
T ss_pred HHHHHHHHCCCeEEEeCCCCCC--cc--c-eEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCccHHHHHHHH
Confidence 5555677789999997543211 11 1 122222 2345666666776552 34688888643221 12233455
Q ss_pred HHHHhhc--CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc-chHHHHHHHHHHHHcCC
Q 008904 180 GDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG-YSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 180 ~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~-~~~~~~~il~~a~~~g~ 243 (549)
.+.+.+. ++++.... .. . .+...-....+.+-.+.+++=.+++ +...+.-.++++++.|.
T Consensus 171 ~~~l~~~~p~~~vv~~~-~~-~--~d~~~a~~~~~~lL~~~pdi~aI~~~~~~~~~Ga~~Al~~~g~ 233 (336)
T PRK15408 171 KAKIAKEHPGWEIVTTQ-FG-Y--NDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKR 233 (336)
T ss_pred HHHHHhhCCCCEEEeec-CC-C--CcHHHHHHHHHHHHHHCCCCcEEEECCCccHHHHHHHHHhCCC
Confidence 5555432 45555322 11 1 1222223345554444444333333 33333457777777775
|
|
| >PRK10423 transcriptional repressor RbsR; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.045 Score=53.57 Aligned_cols=209 Identities=9% Similarity=0.014 Sum_probs=113.0
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCC
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~ 100 (549)
....-.||+++|... .+-.....+++-+.++ .|+.+.+ .++..++..-.+....+.+++++++|= |..
T Consensus 53 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 53 LNQTRTIGMLITASTNPFYSELVRGVERSCFE--------RGYSLVL--CNTEGDEQRMNRNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred hCCCCeEEEEeCCCCCCcHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345568999998642 2222334444444443 2555544 344445554445555666778888774 222
Q ss_pred chHHHHHHHhhhh-cCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC--CcccchHH
Q 008904 101 AVMAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVT 177 (549)
Q Consensus 101 s~~~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~--~~g~~~~~ 177 (549)
.. ... ...+.. .++|+|...... ....++ .+......-+..+++.|...|-+++++|.... .......+
T Consensus 123 ~~-~~~-~~~l~~~~~iPvV~i~~~~---~~~~~~---~v~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 194 (327)
T PRK10423 123 TH-QPS-REIMQRYPSVPTVMMDWAP---FDGDSD---LIQDNSLLGGDLATQYLIDKGYTRIACITGPLDKTPARLRLE 194 (327)
T ss_pred cc-hhh-HHHHHhcCCCCEEEECCcc---CCCCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEeCCccccchHHHHH
Confidence 11 111 122233 489999874321 111111 23344445577788888888999999996432 23345567
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.|.+.+++.|+.+.....+... .....-...++++.+.. ++. |++++...+..+++.+++.|+..++-+-|+
T Consensus 195 Gf~~al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~A~g~~~~l~~~g~~vP~dvsvi 268 (327)
T PRK10423 195 GYRAAMKRAGLNIPDGYEVTGD--FEFNGGFDAMQQLLALPLRPQA-VFTGNDAMAVGVYQALYQAGLSVPQDIAVI 268 (327)
T ss_pred HHHHHHHHcCCCCCcceEEeCC--CChHHHHHHHHHHhcCCCCCCE-EEEcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8888888888654221111111 11122233445544332 344 444555666788999999987655444443
|
|
| >cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.096 Score=49.92 Aligned_cols=200 Identities=14% Similarity=0.023 Sum_probs=108.6
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||+++|... .+......+++-+.++ . |+.+ .+.+...++..-.+....++..++++||- +..+....
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~---~-----g~~v--~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~ 70 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKA---L-----GYEL--ISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLV 70 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHH---c-----CCEE--EEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchH
Confidence 5888888642 1112233344444443 1 4444 34455556665556666777788887774 33322222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-cCCc--EEEEEEecC--CcccchHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWG--EVIAIFNDD--DQGRNGVTALG 180 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~--~v~ii~~~~--~~g~~~~~~l~ 180 (549)
.....+...++|+|.+....+ + ..+.+..+..+....++.+++.|.. .|-+ +++++..+. ..+....+.|+
T Consensus 71 ~~i~~~~~~~iPvV~~~~~~~---~-~~~~~~~v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~ 146 (282)
T cd06318 71 PAVAAAKAAGVPVVVVDSSIN---L-EAGVVTQVQSSNAKNGNLVGEWVVGELGDKPMKIILLSGDAGNLVGQARRDGFL 146 (282)
T ss_pred HHHHHHHHCCCCEEEecCCCC---C-CcCeEEEEecCcHHHHHHHHHHHHHHhCCCCceEEEEECCCCCchHhHHHHhHH
Confidence 333445678999998754211 1 0122345666777778888888765 6754 888887432 33455667788
Q ss_pred HHHhhcCeE------EEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 181 DKLAEIRCK------ISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 181 ~~~~~~g~~------v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
+.+++.|+. .......... ....+....+.++... .++.|+ +.+...+..+++.+++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 215 (282)
T cd06318 147 LGVSEAQLRKYGKTNFTIVAQGYGD--WTREGGLKAMEDLLVAHPDINVVY-SENDDMALGAMRVLAEAGKT 215 (282)
T ss_pred HHHhhCcccccccCCeEEEecCCCC--CCHHHHHHHHHHHHHhCCCcCEEE-ECCcchHHHHHHHHHHcCCC
Confidence 888887642 1111101111 1122223344444322 344443 34445667788999998874
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.035 Score=52.56 Aligned_cols=206 Identities=13% Similarity=0.079 Sum_probs=109.7
Q ss_pred EEEEEeccC------CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcCCC
Q 008904 28 NVGAIFSFG------TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGPQS 100 (549)
Q Consensus 28 ~IG~l~~~~------~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp~~ 100 (549)
.||+++|.. ..+......+++-+.++ .|+++.+. +.. ++..-.+...+++. +++.+||-...
T Consensus 1 ~igli~p~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 1 TIGVVLPPSADEAFQNPFFIEVLRGISAVANE--------NGYDISLA--TGK-NEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred CEEEEeCCccccCcCCCCHHHHHHHHHHHHHH--------CCCEEEEe--cCC-CcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 378888852 22222334444444444 25566543 332 23333455555554 46877665322
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--ccchHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVTA 178 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~~~~~~ 178 (549)
... ......+...++|+|.+....+ . .+.+..+.......++.+++.+...|-++++++.....+ .....+.
T Consensus 70 ~~~-~~~~~~~~~~~ipvV~~~~~~~---~--~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g 143 (270)
T cd06294 70 RED-DPIIDYLKEEKFPFVVIGKPED---D--KENITYVDNDNIQAGYDATEYLIKLGHKKIAFVGGDLDLEVTQDRLQG 143 (270)
T ss_pred cCC-cHHHHHHHhcCCCEEEECCCCC---C--CCCCCeEEECcHHHHHHHHHHHHHcCCccEEEecCCcccHHHHHHHHH
Confidence 212 2223345667999998753221 1 011223445666677788888888899999999754332 2335677
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCe-EEEEe
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGY-VWIAT 253 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~-~~i~~ 253 (549)
|.+.+++.|+.+......... .........+.++.++. +++|+. .+...+..+++.+++.|+..++- ..++.
T Consensus 144 f~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~iP~dv~vig~ 218 (270)
T cd06294 144 YKQALEDHGIPDRNEVIISLD--FSEEGGYKALKKLLEQHPRPTAIVA-TDDLLALGVLKVLNELGLKVPEDLSIIGF 218 (270)
T ss_pred HHHHHHHcCCCCCcceEEecC--CchHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCcceEEEee
Confidence 888888887532111111111 11223344555544333 444443 45567778888989988764443 34433
|
This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.049 Score=53.33 Aligned_cols=208 Identities=7% Similarity=-0.022 Sum_probs=113.6
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCc
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSA 101 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s 101 (549)
...-.||+++|.. ..+......+++-+.++ .|+.+.+. +...++..-.+....+..++++++|- |...
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~--------~gy~~~i~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 127 (327)
T TIGR02417 58 GRSRTIGLVIPDLENYSYARIAKELEQQCRE--------AGYQLLIA--CSDDNPDQEKVVIENLLARQVDALIVASCMP 127 (327)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHHH--------CCCEEEEE--eCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3457899999853 22222333343333332 25666543 33334544444555566778888764 3322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.....+ ..+...++|+|......+ +..+++ +.+.+..-+..+++.|...|-++++++..... ......+.|
T Consensus 128 ~~~~~~-~~l~~~~iPvV~~~~~~~---~~~~~~---V~~dn~~~~~~~~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 200 (327)
T TIGR02417 128 PEDAYY-QKLQNEGLPVVALDRSLD---DEHFCS---VISDDVDAAAELIERLLSQHADEFWYLGAQPELSVSRDRLAGF 200 (327)
T ss_pred CChHHH-HHHHhcCCCEEEEccccC---CCCCCE---EEeCcHHHHHHHHHHHHHCCCCeEEEEeCcccchhHHHHHHHH
Confidence 122333 334567999998753221 112232 34556666677778888889999999975432 234456778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC---CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
.+.+++.|+.+..... . . .....-...++++.+. .++.|+. .+...+..+++.+++.| ..++ ...++.+
T Consensus 201 ~~al~~~~~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~~Ai~~-~~D~~A~g~~~al~~~g-~vP~dvsvigfd 273 (327)
T TIGR02417 201 RQALKQATLEVEWVYG-G-N--YSRESGYQMFAKLCARLGRLPQALFT-TSYTLLEGVLDYMLERP-LLDSQLHLATFG 273 (327)
T ss_pred HHHHHHcCCChHhEEe-C-C--CChHHHHHHHHHHHhcCCCCCcEEEE-cCcHHHHHHHHHHHHcC-CCCCcceEEEEC
Confidence 8888888864321111 1 1 1122223445555432 2455444 44556777889999988 5553 3444443
|
Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer. |
| >smart00062 PBPb Bacterial periplasmic substrate-binding proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00038 Score=63.12 Aligned_cols=73 Identities=18% Similarity=0.376 Sum_probs=59.5
Q ss_pred eEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceE
Q 008904 463 QLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVA 542 (549)
Q Consensus 463 ~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~t 542 (549)
+|+|++.. .+.|+.... .++...||++|+++.+.+.+|++ +++... .|+.++..|.+|++|++++...
T Consensus 1 ~l~v~~~~--~~~p~~~~~-~~g~~~G~~~~~~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~~ 68 (219)
T smart00062 1 TLRVGTNG--DYPPFSFAD-EDGELTGFDVDLAKAIAKELGLK--VEFVEV-------SFDNLLTALKSGKIDVVAAGMT 68 (219)
T ss_pred CEEEEecC--CCCCcEEEC-CCCCcccchHHHHHHHHHHhCCe--EEEEec-------cHHHHHHHHHCCcccEEecccc
Confidence 36777742 556665543 35669999999999999999988 999888 8999999999999999998776
Q ss_pred Eeecc
Q 008904 543 QLTRV 547 (549)
Q Consensus 543 i~~~r 547 (549)
.+.+|
T Consensus 69 ~~~~~ 73 (219)
T smart00062 69 ITPER 73 (219)
T ss_pred CCHHH
Confidence 66655
|
bacterial proteins, eukaryotic ones are in PBPe |
| >cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.059 Score=51.08 Aligned_cols=207 Identities=14% Similarity=0.073 Sum_probs=115.1
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCC-ch--
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQS-AV-- 102 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~-s~-- 102 (549)
.||+++|.. ..+-.....+++-+.++ . |+.+.+ .++..++..-.+....++.++++++|= +.. ..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~----~----g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 70 (273)
T cd06292 1 LVGLLVPELSNPIFPAFAEAIEAALAQ----Y----GYTVLL--CNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTH 70 (273)
T ss_pred CEEEEeCCCcCchHHHHHHHHHHHHHH----C----CCEEEE--EeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCccc
Confidence 378999864 22222334444444444 2 556543 444455555556667777788888774 222 11
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~ 180 (549)
........+...++|+|.+....+. ...++ .+..+....+..+++.|...|-++++++..... ......+.|.
T Consensus 71 ~~~~~i~~~~~~~ipvV~i~~~~~~--~~~~~---~V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~ 145 (273)
T cd06292 71 ADHSHYERLAERGLPVVLVNGRAPP--PLKVP---HVSTDDALAMRLAVRHLVALGHRRIGFASGPGRTVPRRRKIAGFR 145 (273)
T ss_pred chhHHHHHHHhCCCCEEEEcCCCCC--CCCCC---EEEECcHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHH
Confidence 1112223345679999997543221 01223 244567778888889988889999998875432 2344567788
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.++++|+........... .+.......++++....+++|+ +.+...+..+++..++.|+..++-+-|.
T Consensus 146 ~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~ai~-~~~d~~a~g~~~~l~~~g~~ip~di~ii 214 (273)
T cd06292 146 AALEEAGLEPPEALVARGM--FSVEGGQAAAVELLGSGPTAIV-AASDLMALGAIRAARRRGLRVPEDVSVV 214 (273)
T ss_pred HHHHHcCCCCChhheEeCC--CCHHHHHHHHHHHhcCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCcceEEE
Confidence 8888887532110001111 1122233444554433466544 4455566678888888887655444444
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.052 Score=51.33 Aligned_cols=197 Identities=10% Similarity=0.011 Sum_probs=104.6
Q ss_pred EEEEeccC----CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHH
Q 008904 29 VGAIFSFG----TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (549)
Q Consensus 29 IG~l~~~~----~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 104 (549)
||+++|.. ..+-.....+++-+.++ .|+++.+...|. +...-......+...++++||-......
T Consensus 2 vgv~~~~~~~~~~~~~~~~~~~i~~~~~~--------~g~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiii~~~~~~- 70 (268)
T cd06277 2 IGLIASKRILNSPAFYSEIYRAIEEEAKK--------YGYNLILKFVSD--EDEEEFELPSFLEDGKVDGIILLGGIST- 70 (268)
T ss_pred eEEEEeccccccCCcHHHHHHHHHHHHHH--------cCCEEEEEeCCC--ChHHHHHHHHHHHHCCCCEEEEeCCCCh-
Confidence 78888872 22222333344333333 256776665543 2222222233355678988885332222
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDK 182 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~ 182 (549)
.....+...++|+|......+ +...++ +..+....++..++.+...|.++++++..+.. ......+.|.+.
T Consensus 71 -~~~~~l~~~~ipvV~~~~~~~---~~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~ 143 (268)
T cd06277 71 -EYIKEIKELGIPFVLVDHYIP---NEKADC---VLTDNYSGAYAATEYLIEKGHRKIGFVGDPLYSPSFEERYEGYKKA 143 (268)
T ss_pred -HHHHHHhhcCCCEEEEccCCC---CCCCCE---EEecchHHHHHHHHHHHHCCCCcEEEECCCCCCcchHHHHHHHHHH
Confidence 224445667999998743322 112233 33455556677778888889999999975543 223455678888
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
+++.|+.+......... ......+...++++. ..++. |++.+...+..+++.+.+.|+..+
T Consensus 144 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~-~~~~a-i~~~~d~~a~g~~~a~~~~g~~~p 204 (268)
T cd06277 144 LLDHGIPFNEDYDITEK-EEDEEDIGKFIDELK-PLPTA-FFCSNDGVAFLLIKVLKEMGIRVP 204 (268)
T ss_pred HHHcCCCCCcceEEEcc-hhHHHHHHHHHhcCC-CCCCE-EEECCcHHHHHHHHHHHHcCCCCC
Confidence 88887654321111100 011223333333322 12454 444455566777888888887543
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.14 Score=48.44 Aligned_cols=204 Identities=9% Similarity=0.095 Sum_probs=106.3
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH-HH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM-AH 105 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~-~~ 105 (549)
+||+++....++-.....++.-+.++ .|+.+.+.. ++..+...-.+....+++.+|+++|= |..... ..
T Consensus 1 ~i~~v~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~ 71 (271)
T cd06314 1 TIAVVTNGASPFWKIAEAGVKAAGKE--------LGVDVEFVV-PQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIP 71 (271)
T ss_pred CeEEEcCCCcHHHHHHHHHHHHHHHH--------cCCeEEEeC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHH
Confidence 47877755432222223333333333 245555442 23335555555666677778988874 433222 23
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC--cccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~--~g~~~~~~l~~ 181 (549)
.+..+ .. ++|+|......+ +. +.+..+.......++.+++.+... +-.+++++..... ......+.+.+
T Consensus 72 ~l~~~-~~-~ipvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~ 144 (271)
T cd06314 72 ALNKA-AA-GIKLITTDSDAP---DS--GRYVYIGTDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKD 144 (271)
T ss_pred HHHHH-hc-CCCEEEecCCCC---cc--ceeEEEccChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHH
Confidence 34444 45 999999743211 11 112234556666778888887664 3446666664322 23455677888
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
.+++.|+.+.... .. . ....+....++++-+. .++.|+. .+...+..++..+++.|+. .+...++.
T Consensus 145 ~~~~~~~~~~~~~-~~-~--~~~~~~~~~~~~~l~~~~~~~~i~~-~~d~~a~~~~~al~~~g~~-~di~vig~ 212 (271)
T cd06314 145 AIKDSKIEIVDTR-GD-E--EDFAKAKSNAEDALNAHPDLKCMFG-LYAYNGPAIAEAVKAAGKL-GKVKIVGF 212 (271)
T ss_pred HHhcCCcEEEEEe-cC-c--cCHHHHHHHHHHHHHhCCCccEEEe-cCCccHHHHHHHHHHcCCC-CceEEEEe
Confidence 8888888765421 11 1 1122333445555333 2355443 3334445577788888875 34334433
|
Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP). |
| >cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00054 Score=62.18 Aligned_cols=72 Identities=18% Similarity=0.399 Sum_probs=58.8
Q ss_pred EEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceEEe
Q 008904 465 RIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVAQL 544 (549)
Q Consensus 465 ~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ti~ 544 (549)
+|++.. .++|+... .+++.+.|+++|+++.+++.++.+ ++++.. .|..+...|.+|++|++++..+.+
T Consensus 2 ~i~~~~--~~~p~~~~-~~~g~~~G~~~~~~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~~~~ 69 (218)
T cd00134 2 TVGTAG--TYPPFSFR-DANGELTGFDVDLAKAIAKELGVK--VKFVEV-------DWDGLITALKSGKVDLIAAGMTIT 69 (218)
T ss_pred EEecCC--CCCCeeEE-CCCCCEEeeeHHHHHHHHHHhCCe--EEEEeC-------CHHHHHHHHhcCCcCEEeecCcCC
Confidence 455543 44566554 356789999999999999999988 999999 799999999999999999887777
Q ss_pred eccc
Q 008904 545 TRVS 548 (549)
Q Consensus 545 ~~r~ 548 (549)
++|+
T Consensus 70 ~~~~ 73 (218)
T cd00134 70 PERA 73 (218)
T ss_pred HHHH
Confidence 7664
|
PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD. |
| >cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.036 Score=52.13 Aligned_cols=198 Identities=10% Similarity=0.035 Sum_probs=112.8
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.. ..+......+++.+.++ .|+.+.+. ++..++....+....+...++.++|=..+......
T Consensus 1 ~i~~i~~~~~~~~~~~i~~gi~~~~~~--------~g~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 70 (260)
T cd06286 1 TIGVVLPYINHPYFSQLVDGIEKAALK--------HGYKVVLL--QTNYDKEKELEYLELLKTKQVDGLILCSRENDWEV 70 (260)
T ss_pred CEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEEE--eCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence 378888863 33333445565555554 15666543 44455555555566667778887774322222334
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC--CcccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~--~~g~~~~~~l~~~~~ 184 (549)
+..+.+ .+ |++......+ ...+ .+.++....+..+++.+...|-++++++..+. .......+.|.+.++
T Consensus 71 ~~~~~~-~~-pvv~~~~~~~----~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~ 141 (260)
T cd06286 71 IEPYTK-YG-PIVLCEEYDS----KNIS---SVYIDHYEAFYEALKYLIQKGYRKIAYCIGRKKSLNSQSRKKAYKDALE 141 (260)
T ss_pred HHHHhc-CC-CEEEEecccC----CCCC---EEEECChHHHHHHHHHHHHCCCceEEEEcCCcccchhHHHHHHHHHHHH
Confidence 444443 34 8887642211 1123 34556777788888988888999999997543 233445677888888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
+.|+.+.....+... ....+-...++++.+. .++.| ++++...+..+++.++++|+..++
T Consensus 142 ~~~~~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~~~~~~l~~~g~~ip~ 203 (260)
T cd06286 142 EYGLTPDEEWIFEGC--FTIEDGERIGHQLLKMKDRPDAI-FTGSDEVAAGIITEAKKQGIRVPE 203 (260)
T ss_pred HcCCCCChHheEeCC--CCHHHHHHHHHHHHcCCCCCCEE-EEcchHHHHHHHHHHHHcCCCCCc
Confidence 887654221111111 1122334455555433 34544 455566677889999998875443
|
This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree. |
| >cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.062 Score=50.69 Aligned_cols=200 Identities=13% Similarity=0.082 Sum_probs=111.9
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
.||+++|... .+-.....++..++++ .|+++.+ .+...++..-.+....+..++++++|= |......
T Consensus 1 ~Ig~i~p~~~~~~~~~~~~~i~~~~~~--------~g~~~~~--~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~- 69 (263)
T cd06280 1 TVGLIVADIRNPFFTAVSRAVEDAAYR--------AGLRVIL--CNTDEDPEKEAMYLELMEEERVTGVIFAPTRATLR- 69 (263)
T ss_pred CEEEEecccccccHHHHHHHHHHHHHH--------CCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCch-
Confidence 3889998753 2223344555555554 2566644 344445544444445566667877664 3222221
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHHHHHHh
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALGDKLA 184 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l~~~~~ 184 (549)
... +...++|+|......+ ...++++ ..+....+..+++.|...|-++++++..... ......+.+.+.++
T Consensus 70 -~~~-~~~~~iPvV~~~~~~~---~~~~~~v---~~d~~~~g~~a~~~L~~~g~~~i~~~~~~~~~~~~~R~~gf~~~~~ 141 (263)
T cd06280 70 -RLA-ELRLSFPVVLIDRAGP---AGRVDAV---VLDNRAAARTLVEHLVAQGYRRIGGLFGNASTTGAERRAGYEDAMR 141 (263)
T ss_pred -HHH-HHhcCCCEEEECCCCC---CCCCCEE---EECcHHHHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222 3456899998754322 2233432 3466667888888888889999999875322 22344677788888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.|+..... .... ........++++... .+++ |++.+...+..+++.+++.|+..++-+.|.
T Consensus 142 ~~~~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~~l~~~g~~~p~di~ii 205 (263)
T cd06280 142 RHGLAPDAR-FVAP----TAEAAEAALAAWLAAPERPEA-LVASNGLLLLGALRAVRAAGLRIPQDLALA 205 (263)
T ss_pred HcCCCCChh-hccc----CHHHHHHHHHHHhcCCCCCcE-EEECCcHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 877653221 1111 122223344444333 3444 444556667788999999997655444443
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.072 Score=50.57 Aligned_cols=180 Identities=11% Similarity=0.107 Sum_probs=106.8
Q ss_pred CceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccC
Q 008904 63 GRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP 141 (549)
Q Consensus 63 g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~p 141 (549)
|+.+.+ .++..++..-.+....++.+++.+||= |..+.........+...++|+|.+....+ +...+.+..+.+
T Consensus 29 G~~~~~--~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~---~~~~~~~~~v~~ 103 (272)
T cd06313 29 GVDVTW--YGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTLIA---PLQINVHSFLAP 103 (272)
T ss_pred CCEEEE--ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCCCC---CCCCceEEEECC
Confidence 555554 455557777777777888888887775 43333333333445567999999754321 111122344667
Q ss_pred CcHHHHHHHHHHHHHc--CCcEEEEEEecCC--cccchHHHHHHHHhhcC-eEEEEEEccCCCCCCChhhHHHHHHHHhc
Q 008904 142 NDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTALGDKLAEIR-CKISYKSALPPDQSVTETDVRNELVKVRM 216 (549)
Q Consensus 142 s~~~~~~ai~~~l~~~--~W~~v~ii~~~~~--~g~~~~~~l~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~~~l~~l~~ 216 (549)
.....+..+++.|... |.++++++..+.. ......+.|.+.+++.+ +++... .... .........++++.+
T Consensus 104 d~~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~ 179 (272)
T cd06313 104 DNYFMGASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEVVDE--QPAN--WDVSKAARIWETWLT 179 (272)
T ss_pred CcHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEEEec--cCCC--CCHHHHHHHHHHHHH
Confidence 7787888899988777 8899999975432 23345778888888775 554331 1111 122333445555443
Q ss_pred CC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 217 ME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 217 ~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.. +++ |++.+...+..+++.+++.|+ .+...++.+
T Consensus 180 ~~~~~~a-i~~~nd~~a~g~~~al~~~g~--~di~vvgfd 216 (272)
T cd06313 180 KYPQLDG-AFCHNDSMALAAYQIMKAAGR--TKIVIGGVD 216 (272)
T ss_pred hCCCCCE-EEECCCcHHHHHHHHHHHcCC--CceEEEeec
Confidence 33 344 344555566778888888887 444444333
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00058 Score=79.43 Aligned_cols=75 Identities=11% Similarity=0.006 Sum_probs=61.5
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++++|++.. .|+||.+.+ .++.+.||.+|++++|++.+|++ |+++.. ..|..+...|.+|++|++. ++
T Consensus 302 ~~l~v~~~~--~~pP~~~~d-~~g~~~G~~~Dll~~i~~~~g~~--~~~v~~------~~~~~~~~~l~~g~~D~i~-~~ 369 (1197)
T PRK09959 302 PDLKVLENP--YSPPYSMTD-ENGSVRGVMGDILNIITLQTGLN--FSPITV------SHNIHAGTQLNPGGWDIIP-GA 369 (1197)
T ss_pred CceEEEcCC--CCCCeeEEC-CCCcEeeehHHHHHHHHHHHCCe--EEEEec------CCHHHHHHHHHCCCceEee-cc
Confidence 568887643 678888765 46789999999999999999999 999887 2466777889999999865 56
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
+.|++|.
T Consensus 370 ~~t~~r~ 376 (1197)
T PRK09959 370 IYSEDRE 376 (1197)
T ss_pred cCCcccc
Confidence 7898886
|
|
| >PRK10727 DNA-binding transcriptional regulator GalR; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.059 Score=53.19 Aligned_cols=208 Identities=13% Similarity=0.061 Sum_probs=111.0
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
....-.||+++|.- ..+-.....+++.+.++ . |+.+ .+.+...++..-.+....++.++++++|-....
T Consensus 56 ~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~---~-----g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 125 (343)
T PRK10727 56 QQSTETVGLVVGDVSDPFFGAMVKAVEQVAYH---T-----GNFL--LIGNGYHNEQKERQAIEQLIRHRCAALVVHAKM 125 (343)
T ss_pred hCCCCeEEEEeCCCCcchHHHHHHHHHHHHHH---c-----CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 34567899999852 22222233333333332 2 4444 334444455444455556677788887742221
Q ss_pred hHHHHHHHhhhhcCCc-EEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 102 VMAHVLSHLANELQVP-LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP-~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
.....+..+.. ++| +|......+ +...++ +.+.+..-+..+++.|...|-+++++|..... ......+.
T Consensus 126 ~~~~~~~~~~~--~~p~vV~i~~~~~---~~~~~~---V~~Dn~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 197 (343)
T PRK10727 126 IPDAELASLMK--QIPGMVLINRILP---GFENRC---IALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQG 197 (343)
T ss_pred CChHHHHHHHh--cCCCEEEEecCCC---CCCCCE---EEECcHHHHHHHHHHHHHCCCccEEEEeCCccccchHHHHHH
Confidence 11223334333 677 676532211 111222 34556666777778888889999999975432 23455678
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
|.+.+++.|+.+......... .....-...++++.+.. ++.| ++.+...+..+++.++++|+..++-+-|
T Consensus 198 f~~al~~~gi~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai-~~~nD~~A~g~~~al~~~G~~vP~disV 269 (343)
T PRK10727 198 YYDALAESGIPANDRLVTFGE--PDESGGEQAMTELLGRGRNFTAV-ACYNDSMAAGAMGVLNDNGIDVPGEISL 269 (343)
T ss_pred HHHHHHHCCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEE-EEcCcHHHHHHHHHHHHcCCCCCcceeE
Confidence 888898888754221111111 11112223445543333 4444 4455566778899999999865544443
|
|
| >cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.19 Score=47.73 Aligned_cols=210 Identities=12% Similarity=0.058 Sum_probs=108.8
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||++.|... .+-.....++.-+.++.+.. ...+.....+ ..++..-.+....+.. +++++|- +.......
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~i~~~~~~~g~~-----~~~~~~~~~~-~~~~~~~~~~i~~~~~-~vdgiii~~~~~~~~~ 73 (275)
T cd06307 1 RLGFLLPKGSNAFYRELAAALEAAAAAFPDA-----RIRVRIHFVE-SFDPAALAAALLRLGA-RSDGVALVAPDHPQVR 73 (275)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhhhhcc-----CceEEEEEcc-CCCHHHHHHHHHHHHh-cCCEEEEeCCCcHHHH
Confidence 5888887642 22223344444444442211 1233333322 2345444445555556 8887763 43333322
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-CC--cEEEEEEecCC--cccchHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-GW--GEVIAIFNDDD--QGRNGVTALG 180 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-~W--~~v~ii~~~~~--~g~~~~~~l~ 180 (549)
.....+...++|+|.+....+. ... +..+.......+...+++|.+. |. ++++++..... ......+.|.
T Consensus 74 ~~i~~~~~~~ipvV~~~~~~~~--~~~---~~~V~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~ 148 (275)
T cd06307 74 AAVARLAAAGVPVVTLVSDLPG--SPR---AGYVGIDNRAAGRTAAWLIGRFLGRRPGKVAVLAGSHRFRGHEEREMGFR 148 (275)
T ss_pred HHHHHHHHCCCcEEEEeCCCCC--Cce---eeEEccChHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcchHHHHHHHH
Confidence 3334555689999987432211 111 2234555666677777777665 54 69998875432 2334567788
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+.+++.+..+......... .+..+....++++.+ ..++.|+...+. +..+++.+++.|+. .+...++.+
T Consensus 149 ~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--~~g~~~al~~~g~~-~di~Ivg~d 219 (275)
T cd06307 149 SVLREEFPGLRVLETLEGL--DDPARAYEATRKLLARHPDLVGIYNAGGG--NRGVIRALREAGRA-GKVVFVGHE 219 (275)
T ss_pred HHHHhhCCCcEEEeeccCC--CChHHHHHHHHHHHHhCCCceEEEECCCC--hHHHHHHHHHcCCC-CCcEEEEec
Confidence 8888776544332222211 122233345555432 245566555443 36788899998874 344444443
|
Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes. |
| >cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.068 Score=50.40 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=106.3
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
.||++.|.- ..+-.....+++-+.++ .|+++.+ .++..++..-.+....+...++.++|- +....
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~--- 67 (265)
T cd06291 1 LIGLIVPTISNPFFSELARAVEKELYK--------KGYKLIL--CNSDNDPEKEREYLEMLRQNQVDGIIAGTHNLG--- 67 (265)
T ss_pred CEEEEECCCCChhHHHHHHHHHHHHHH--------CCCeEEE--ecCCccHHHHHHHHHHHHHcCCCEEEEecCCcC---
Confidence 378888753 32222333444333333 2455543 444445554445555566668887774 32222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC---cccchHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD---QGRNGVTALGDK 182 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~---~g~~~~~~l~~~ 182 (549)
.. .+...++|+|......+ ..+++ +.++....+..+++.|...|.++++++..... ......+.|.+.
T Consensus 68 -~~-~~~~~gipvv~~~~~~~----~~~~~---V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~ 138 (265)
T cd06291 68 -IE-EYENIDLPIVSFDRYLS----ENIPI---VSSDNYEGGRLAAEELIERGCKHIAHIGGPNNTVSPTNLRYEGFLDV 138 (265)
T ss_pred -HH-HHhcCCCCEEEEeCCCC----CCCCe---EeechHHHHHHHHHHHHHcCCcEEEEEccCcccccchHHHHHHHHHH
Confidence 12 33467999998754322 12232 44555667788888888889999999874332 234556778888
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
+++.|+.+.... .... .........+.++.+.. .+.|+ +++...+..+++.+.+.|...++
T Consensus 139 l~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~~~~~al~~~g~~vp~ 201 (265)
T cd06291 139 LKENGLEVRIIE-IQEN--FDDAEKKEEIKELLEEYPDIDGIF-ASNDLTAILVLKEAQQRGIRVPE 201 (265)
T ss_pred HHHcCCCCChhe-eecc--ccchHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCc
Confidence 888876543211 1111 11111233444443332 34443 34455667788888888875444
|
This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription |
| >cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.061 Score=51.00 Aligned_cols=207 Identities=14% Similarity=0.143 Sum_probs=115.4
Q ss_pred EEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH---H
Q 008904 29 VGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM---A 104 (549)
Q Consensus 29 IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~---~ 104 (549)
||+++|... ..+...+...+++.-++. |+.+. +.++..++....+....++..+|+++|= |..+.. .
T Consensus 2 igvv~~~~~---~~~~~~~~~gi~~~~~~~----g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~ 72 (273)
T cd01541 2 IGVITTYIS---DYIFPSIIRGIESVLSEK----GYSLL--LASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPN 72 (273)
T ss_pred eEEEeCCcc---chhHHHHHHHHHHHHHHc----CCEEE--EEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccccc
Confidence 788887532 122333333344333332 45553 4455566766667777888889988873 332211 1
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHHHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALGDKL 183 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l~~~~ 183 (549)
......+...++|+|......+ +.. +..+..+....+..+++.+...|.++++++...+. .+....+.+.+.+
T Consensus 73 ~~~~~~~~~~~ipvV~~~~~~~---~~~---~~~V~~D~~~~g~~~~~~l~~~G~~~i~~l~~~~~~~~~~r~~g~~~~l 146 (273)
T cd01541 73 IDLYLKLEKLGIPYVFINASYE---ELN---FPSLVLDDEKGGYKATEYLIELGHRKIAGIFKADDLQGVKRMKGFIKAY 146 (273)
T ss_pred HHHHHHHHHCCCCEEEEecCCC---CCC---CCEEEECcHHHHHHHHHHHHHcCCcCEEEecCCCcccHHHHHHHHHHHH
Confidence 1222334667999998753321 111 22355667777888889888889999998874332 2334456677778
Q ss_pred hhcCeEEEEE--EccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 184 AEIRCKISYK--SALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 184 ~~~g~~v~~~--~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
++.|..+... ...... .........++++.+. .+++| ++.+...+..+++.+++.|+..++-+-|.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~av-~~~~d~~a~g~~~al~~~g~~~p~dv~vvg 217 (273)
T cd01541 147 REHGIPFNPSNVITYTTE--EKEEKLFEKIKEILKRPERPTAI-VCYNDEIALRVIDLLKELGLKIPEDISVVG 217 (273)
T ss_pred HHcCCCCChHHEEecccc--chhhHHHHHHHHHHcCCCCCCEE-EEcCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 7777643211 111111 1112334455555433 34544 445556666788889998976555444443
|
Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i |
| >cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.059 Score=50.73 Aligned_cols=199 Identities=14% Similarity=0.092 Sum_probs=107.1
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|... .+......+++-+.++ .|+.+.+...+ +.. .....+...++.++|-.........
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~~~~~---~~~---~~~~~l~~~~vdgii~~~~~~~~~~ 66 (261)
T cd06272 1 TIGLIWPSVSRVALTELVTGINQAISK--------NGYNMNVSITP---SLA---EAEDLFKENRFDGVIIFGESASDVE 66 (261)
T ss_pred CEEEEecCCCchhHHHHHHHHHHHHHH--------cCCEEEEEecc---cHH---HHHHHHHHcCcCEEEEeCCCCChHH
Confidence 3788998642 2222233344333332 25566665433 222 2233455668887774222222222
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHHh
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLA 184 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~~ 184 (549)
+ ..+...++|+|......+ ..+++ +.......+..+++.+...|-++++++..... ........+.+.++
T Consensus 67 ~-~~~~~~~ipvV~~~~~~~----~~~~~---V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~ 138 (261)
T cd06272 67 Y-LYKIKLAIPVVSYGVDYD----LKYPI---VNVDNEKAMELAVLYLAEKGHKKIAYIGDLSLDRRQRKRFKGFLETCD 138 (261)
T ss_pred H-HHHHHcCCCEEEEcccCC----CCCCE---EEEChHHHHHHHHHHHHHcCchhEEEeecccccccHHHHHHHHHHHHH
Confidence 2 444578899998743222 12232 44566677788889888889999999975433 22344567788888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.|+.+......... .........+.++.+.. +++ |++++...+..+++.+++.|+..++-+-+
T Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~~~~~~l~~~g~~vp~dv~v 204 (261)
T cd06272 139 ENGISISDSHIDVDG--LSAEGGDNAAKKLLKESDLPTA-IICGSYDIALGVLSALNKQGISIPEDIEI 204 (261)
T ss_pred HcCCCCCHHHeeeCC--CCHHHHHHHHHHHHcCCCCCCE-EEECCcHHHHHHHHHHHHhCCCCCCceEE
Confidence 887532211111111 11223334455544333 344 44455556777888888888764443433
|
Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor |
| >PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.034 Score=53.51 Aligned_cols=185 Identities=10% Similarity=0.082 Sum_probs=104.2
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+||++-..+.+.-.....|++-++++. + +.. ..+++.+.+..+++....+.+.++...+++.|+-- .+..+..+
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~---g-~~~-~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~-gt~aa~~~ 74 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKEL---G-YDE-KNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAI-GTPAAQAL 74 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHT---T---C-CCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEE-SHHHHHHH
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHc---C-Ccc-ccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEe-CcHHHHHH
Confidence 577777776433234456666555543 2 223 56788888888998887777777777777777753 23444555
Q ss_pred HHhhhhcCCcEEecccCCCCCCC----CCC--CceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCCc-ccchHHH
Q 008904 108 SHLANELQVPLLSFTALDPTLSP----LQY--PFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ-GRNGVTA 178 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~----~~~--~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~~-g~~~~~~ 178 (549)
....... +|+|-.+.++|...+ ... .++.-+. +......-+++++++ +-++++++|+++.- +....+.
T Consensus 75 ~~~~~~~-iPVVf~~V~dp~~~~l~~~~~~~~~nvTGv~--~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~ 151 (294)
T PF04392_consen 75 AKHLKDD-IPVVFCGVSDPVGAGLVDSLDRPGKNVTGVS--ERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQ 151 (294)
T ss_dssp HHH-SS--S-EEEECES-TTTTTS-S-SSS--SSEEEEE--E---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHH
T ss_pred HHhcCCC-cEEEEEeccChhhhhccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHH
Confidence 4443332 999987776664332 122 2444433 333445566666664 46899999976643 3456778
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
+++.+++.|+++.... ++ +..++...++.+.. +.+++++..+.
T Consensus 152 ~~~~a~~~g~~l~~~~-v~-----~~~~~~~~~~~l~~-~~da~~~~~~~ 194 (294)
T PF04392_consen 152 LRKAAKKLGIELVEIP-VP-----SSEDLEQALEALAE-KVDALYLLPDN 194 (294)
T ss_dssp HHHHHHHTT-EEEEEE-ES-----SGGGHHHHHHHHCT-T-SEEEE-S-H
T ss_pred HHHHHHHcCCEEEEEe-cC-----cHhHHHHHHHHhhc-cCCEEEEECCc
Confidence 8888888999876543 22 35677788888754 45777775543
|
ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A. |
| >TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.15 Score=49.08 Aligned_cols=196 Identities=12% Similarity=0.005 Sum_probs=104.9
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH-HH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM-AH 105 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~-~~ 105 (549)
+||+++|... ......+...+++.=++ .|+.+.+...+...+...-.+....++++++++||- |..... ..
T Consensus 1 ~igvvvp~~~---n~f~~~~~~gi~~~a~~----~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~ 73 (295)
T TIGR02955 1 KLCALYPHLK---DSYWLSINYGMVEQAKH----LGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNH 73 (295)
T ss_pred CeeEEecCCC---cHHHHHHHHHHHHHHHH----hCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhH
Confidence 5899998632 12222223233332222 255665543332234555555666677889988874 322222 23
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-C----CcEEEEEEecCC--cccchHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G----WGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-~----W~~v~ii~~~~~--~g~~~~~~ 178 (549)
.+..+ . .++|+|.+..... .+ ..+..+......-++.+++.|... . -.+++++..... ......+.
T Consensus 74 ~l~~~-~-~~iPvV~~~~~~~--~~---~~~~~V~~D~~~~g~~~~~~L~~~~~~~~g~~~I~~i~g~~~~~~~~~R~~G 146 (295)
T TIGR02955 74 DLAQL-T-KSIPVFALVNQID--SN---QVKGRVGVDWYQMGYQAGEYLAQRHPKGSGPTTLAWLPGPKNRGGTKPVTQG 146 (295)
T ss_pred HHHHH-h-cCCCEEEEecCCC--cc---ceeEEEeecHHHHHHHHHHHHHHhcccCCCCeeEEEEeCCCcCCchhHHHHH
Confidence 33333 3 4899997532111 11 123345566666677777777662 1 246999875432 34455778
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
+++.+++.|+.+.... ... .....-...++++.+. ..++| +++...+..+++.+++.|+
T Consensus 147 f~~al~~~g~~~~~~~--~~~--~~~~~~~~~~~~~L~~~~~~d~i--~~~d~~a~g~l~al~~~g~ 207 (295)
T TIGR02955 147 FRAALEGSDVEISAIL--WAD--NDKELQRNLLQDLLKKHPDIDYL--VGSAVAAEAAISELRSLHM 207 (295)
T ss_pred HHHHHhcCCcEEEEEe--cCC--CcHHHHHHHHHHHHHhCCCcCEE--EeccHHHHHHHHHHHhhCc
Confidence 8888888887765321 111 1222333445554332 34643 4555567778888888775
|
Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein. |
| >TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00096 Score=61.81 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=45.8
Q ss_pred EEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 464 LRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 464 ~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
|||++.. .|+||... ...||++||++++++.+|++ ++++..+. .|.-++..|.+|++|++++
T Consensus 2 l~v~~~~--~~~P~~~~-----~~~G~~~el~~~i~~~~g~~--i~~~~~~~-----~~~~~~~~l~~g~~Di~~~ 63 (232)
T TIGR03871 2 LRVCADP--NNLPFSNE-----KGEGFENKIAQLLADDLGLP--LEYTWFPQ-----RRGFVRNTLNAGRCDVVIG 63 (232)
T ss_pred eEEEeCC--CCCCccCC-----CCCchHHHHHHHHHHHcCCc--eEEEecCc-----chhhHHHHHhcCCccEEEe
Confidence 5676643 45666432 24799999999999999999 88876611 2344577899999999876
|
This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme. |
| >cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.22 Score=48.06 Aligned_cols=209 Identities=8% Similarity=-0.046 Sum_probs=111.3
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||++.+.. ..+-.....+++-+.++ .|+++.+. .+...++....+....++.+++.+||- +.......
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~--------~g~~v~~~-~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~ 71 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE--------LGVDAIYV-GPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALE 71 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH--------hCCeEEEE-CCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHH
Confidence 478888753 22222333444444443 24555532 233356666666666677778888875 33333223
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-CC-cEEEEEEecCC--cccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-GW-GEVIAIFNDDD--QGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-~W-~~v~ii~~~~~--~g~~~~~~l~~ 181 (549)
.....+...++|+|.+....+. .+ ..+....+.....++.+++.+... +- ++++++..... ......+.|.+
T Consensus 72 ~~~~~~~~~~iPvV~v~~~~~~-~~---~~~~~v~~D~~~~g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~Gf~~ 147 (298)
T cd06302 72 PVLKKAREAGIKVVTHDSDVQP-DN---RDYDIEQADNKAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDAAKA 147 (298)
T ss_pred HHHHHHHHCCCeEEEEcCCCCC-Cc---ceeEEeccCHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 3334456789999987532111 01 112334566777778888887776 43 69998875332 22344577888
Q ss_pred HHhhcCe-EEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 182 KLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 182 ~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
.++++|. .+......... .....-...++++-.. .++.| ++.+...+..+++.+++.|+. .+...++.
T Consensus 148 ~l~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai-~~~~D~~A~g~~~al~~~g~~-~dv~vvG~ 218 (298)
T cd06302 148 YQKEKYYPMLELVDRQYGD--DDADKSYQTAQELLKAYPDLKGI-IGPTSVGIPGAARAVEEAGLK-GKVAVTGL 218 (298)
T ss_pred HHhhcCCCCeEEeCcccCC--CCHHHHHHHHHHHHHhCCCceEE-EECCCcchhHHHHHHHhcCCC-CCEEEEEe
Confidence 8888762 12211111111 1122222344444322 23433 334456677788899998875 33333433
|
Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p |
| >cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.082 Score=49.81 Aligned_cols=199 Identities=11% Similarity=0.043 Sum_probs=104.2
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
|||+++|... ....+...+..++++.-++. |+.+.+ .++. ++....+....+...++++||-.... ....+
T Consensus 1 ~Igvi~~~~~-~~~~f~~~l~~gi~~~~~~~----gy~~~~--~~~~-~~~~~~~~~~~l~~~~vdgiii~~~~-~~~~~ 71 (260)
T cd06304 1 KVALVYDGGG-GDKSFNQSAYEGLEKAEKEL----GVEVKY--VESV-EDADYEPNLRQLAAQGYDLIFGVGFG-FMDAV 71 (260)
T ss_pred CEEEEecCCC-CcchHHHHHHHHHHHHHHhc----CceEEE--EecC-CHHHHHHHHHHHHHcCCCEEEECCcc-hhHHH
Confidence 5899998511 11234445555555543332 455444 4433 44444445555666788877653222 22334
Q ss_pred HHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-CCcEEEEEEecC-CcccchHHHHHHHHh
Q 008904 108 SHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-GWGEVIAIFNDD-DQGRNGVTALGDKLA 184 (549)
Q Consensus 108 a~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-~W~~v~ii~~~~-~~g~~~~~~l~~~~~ 184 (549)
....... ++|++......+. ....+ .+......-++..+.++..+ |-+++++|.... .......+.|.+.++
T Consensus 72 ~~~~~~~~~ipvv~~~~~~~~--~~~~~---~v~~d~~~~~~~a~~l~~~~~g~~~I~~i~~~~~~~~~~R~~Gf~~~~~ 146 (260)
T cd06304 72 EKVAKEYPDVKFAIIDGVVDA--PPNVA---SYVFREYEGSYLAGVLAALMTKTGKVGFVGGMPIPEVNRFINGFAAGAK 146 (260)
T ss_pred HHHHHHCCCCEEEEecCccCC--CCCee---eeecchHHHHHHHHHHHHHhccCCceEEEeccccHHHHHHHHHHHHHHH
Confidence 4555444 7898886432211 01112 23334444445555666655 889999997532 222334567788888
Q ss_pred hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 185 EIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 185 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g 242 (549)
+.|............. .+...-...++++.+..+++| ++.+...+..++.+++++|
T Consensus 147 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~ai-~~~~d~~A~gv~~al~~~g 202 (260)
T cd06304 147 SVNPDITVLVIYTGSF-FDPAKGKEAALALIDQGADVI-FAAAGGTGPGVIQAAKEAG 202 (260)
T ss_pred HhCCCcEEEEEEecCc-cCcHHHHHHHHHHHhCCCCEE-EEcCCCCchHHHHHHHHcC
Confidence 8876433211111110 111223344555544456665 5555556667888888877
|
Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold. |
| >cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.085 Score=49.87 Aligned_cols=200 Identities=14% Similarity=0.021 Sum_probs=101.3
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+||+++|............+..++++.=++ .|+.+.+. +.. ++..-.+....+.+++|++||--... .....
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~----~gy~~~i~--~~~-~~~~~~~~i~~l~~~~vdgiI~~~~~-~~~~~ 72 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE----LGIEYKYV--ESK-SDADYEPNLEQLADAGYDLIVGVGFL-LADAL 72 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH----cCCeEEEE--ecC-CHHHHHHHHHHHHhCCCCEEEEcCcc-hHHHH
Confidence 589999862111122333333344433333 25555554 222 33333445556677799999863222 22344
Q ss_pred HHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-cCCcEEEEEEecCCcccch-HHHHHHHHh
Q 008904 108 SHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDDDQGRNG-VTALGDKLA 184 (549)
Q Consensus 108 a~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~~v~ii~~~~~~g~~~-~~~l~~~~~ 184 (549)
......+ ++|++......+ + .+.+-++......-+..+..++.. .|-++++++..+....... .+.+.+.++
T Consensus 73 ~~~~~~~~~~PiV~i~~~~~---~--~~~~~~v~~d~~~a~~~a~~ll~~~~G~~~I~~i~~~~~~~~~~r~~gf~~~~~ 147 (265)
T cd06354 73 KEVAKQYPDQKFAIIDAVVD---D--PPNVASIVFKEEEGSFLAGYLAALMTKTGKVGFIGGMDIPLIRRFEAGFEAGVK 147 (265)
T ss_pred HHHHHHCCCCEEEEEecccC---C--CCcEEEEEecchhHHHHHHHHHHhhcCCCeEEEEecccChHHHHHHHHHHHHHH
Confidence 5555555 899998753211 1 011222333344344444566654 3889999997533211112 256777787
Q ss_pred hcC---eEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 185 EIR---CKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 185 ~~g---~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g 242 (549)
+.| ..+......... .....+-...++++.+..+++|+. .+...+..+++.+++.|
T Consensus 148 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~pdaI~~-~nd~~A~gv~~al~~~g 206 (265)
T cd06354 148 YVNPGVPDIEVLVQYAGS-FNDPAKGKEIAQAMYDQGADVIFA-AAGGTGNGVFQAAKEAG 206 (265)
T ss_pred HHhccCCCceEEEEEcCc-ccCHHHHHHHHHHHHHCCCcEEEE-CCCCCchHHHHHHHhcC
Confidence 777 543322111111 011122334455654445775444 45556667888888877
|
Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold. |
| >cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.091 Score=49.76 Aligned_cols=200 Identities=12% Similarity=-0.013 Sum_probs=109.5
Q ss_pred EEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEcCCCchHHHH
Q 008904 29 VGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ-FMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 29 IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~aiiGp~~s~~~~~ 106 (549)
||+++|.. .++-.....++..+.++ .|+.+.+...+ .+ ....+...+ +...+|++||=-..... ..
T Consensus 2 Igvi~p~~~~~~~~~~~~~i~~~~~~--------~gy~~~~~~~~--~~-~~~~~~~~~~l~~~~vdgvi~~~~~~~-~~ 69 (269)
T cd06297 2 ISVLLPVVATEFYRRLLEGIEGALLE--------QRYDLALFPLL--SL-ARLKRYLESTTLAYLTDGLLLASYDLT-ER 69 (269)
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHH--------CCCEEEEEeCC--Cc-HHHHHHHHHHHHhcCCCEEEEecCccC-hH
Confidence 78888864 22222333444444444 25666665433 22 222233333 44567887775322222 23
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC--C------cccchHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--D------QGRNGVTA 178 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~--~------~g~~~~~~ 178 (549)
....+...++|+|......+ ..++ +.++...-+...++.|... .++++++.... . ......+.
T Consensus 70 ~~~~l~~~~iPvv~~~~~~~-----~~~~---v~~d~~~~g~~a~~~L~~~-~~~i~~i~~~~~~~~~~~~~~~~~R~~g 140 (269)
T cd06297 70 LAERRLPTERPVVLVDAENP-----RFDS---FYLDNRLGGRLAGAYLADF-PGRIGAITVEEEPDRAFRRTVFAERRAG 140 (269)
T ss_pred HHHHHhhcCCCEEEEccCCC-----CCCE---EEECcHHHHHHHHHHHHHh-CCceEEEeCccccccccccccHHHHHHH
Confidence 33445668999998754221 1232 3356777777788887777 89999886432 2 33455788
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
|++.+++.|+.+.....+... .+..+....+.++.+.. ++.|+ +.+...+..+++.+++.|...++-+.|.
T Consensus 141 f~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~~l~~~g~~vP~di~vv 213 (269)
T cd06297 141 FQQALKDAGRPFSPDLLAITD--HSEEGGRLAMRHLLEKASPPLAVF-ASADQQALGALQEAVELGLTVGEDVRVV 213 (269)
T ss_pred HHHHHHHcCCCCChhhEEeCC--CChhhHHHHHHHHHcCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888888888754321111111 11223344555554332 34444 3455567788889999887655555444
|
Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding. |
| >PRK09526 lacI lac repressor; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.23 Score=48.86 Aligned_cols=204 Identities=11% Similarity=0.070 Sum_probs=111.9
Q ss_pred CceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc--CCC
Q 008904 24 PEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG--PQS 100 (549)
Q Consensus 24 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG--p~~ 100 (549)
...-.||+++|... ..-.....+++-+.++ .|+.+.+...+. .+...-.+....+..++++++|- +..
T Consensus 61 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~i~~~~~-~~~~~~~~~l~~l~~~~vdGiii~~~~~ 131 (342)
T PRK09526 61 KQSLTIGLATTSLALHAPSQIAAAIKSRADQ--------LGYSVVISMVER-SGVEACQAAVNELLAQRVSGVIINVPLE 131 (342)
T ss_pred CCCceEEEEeCCCCcccHHHHHHHHHHHHHH--------CCCEEEEEeCCC-ChHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 34567999998632 2212333444444333 256666543332 12233334445666778888774 333
Q ss_pred chHHHHHHHhh-hhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHH
Q 008904 101 AVMAHVLSHLA-NELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (549)
Q Consensus 101 s~~~~~va~~~-~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~ 177 (549)
... +..+. ...++|+|.+... + +...+ .+.++...-+..+++.|...|-++++++..... ......+
T Consensus 132 ~~~---~~~~~~~~~~iPvV~~d~~-~---~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~l~g~~~~~~~~~R~~ 201 (342)
T PRK09526 132 DAD---AEKIVADCADVPCLFLDVS-P---QSPVN---SVSFDPEDGTRLGVEHLVELGHQRIALLAGPESSVSARLRLA 201 (342)
T ss_pred cch---HHHHHhhcCCCCEEEEecc-C---CCCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCccccHHHHHH
Confidence 222 22222 2358999987431 1 11122 345566667788888888889999999975432 2334566
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.|.+.+++.|+.+..... . . .....-...+.++... .++.| ++++...+..+++.+++.|+..++-+-|
T Consensus 202 Gf~~al~~~gi~~~~~~~-~-~--~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~disv 272 (342)
T PRK09526 202 GWLEYLTDYQLQPIAVRE-G-D--WSAMSGYQQTLQMLREGPVPSAI-LVANDQMALGVLRALHESGLRVPGQISV 272 (342)
T ss_pred HHHHHHHHcCCCcceEEe-C-C--CchHHHHHHHHHHhcCCCCCcEE-EEcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 788888888875432211 1 1 1122222334444332 24444 4455566778899999999865544433
|
|
| >cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.14 Score=48.94 Aligned_cols=195 Identities=11% Similarity=0.011 Sum_probs=107.0
Q ss_pred EEEEeccC------CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 29 VGAIFSFG------TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 29 IG~l~~~~------~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
||+++|.. .++......++.-+.++ .|+.+.+...+. . .+....+...+++++|--....
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~---~---~~~~~~~~~~~~dgiii~~~~~ 67 (283)
T cd06279 2 VGVVLTDSLSYAFSDPVASQFLAGVAEVLDA--------AGVNLLLLPASS---E---DSDSALVVSALVDGFIVYGVPR 67 (283)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHHH--------CCCEEEEecCcc---H---HHHHHHHHhcCCCEEEEeCCCC
Confidence 78999862 22222233444333333 256665543322 1 1233455667888888633322
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC-------------
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD------------- 169 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~------------- 169 (549)
.. .....+...++|+|......+ +.+-.+.......+...+++|...|-++++++..+.
T Consensus 68 ~~-~~~~~~~~~~ipvV~~~~~~~-------~~~~~v~~d~~~~g~~~~~~L~~~g~~~i~~i~~~~~~~~~~~~~~~~~ 139 (283)
T cd06279 68 DD-PLVAALLRRGLPVVVVDQPLP-------PGVPSVGIDDRAAAREAARHLLDLGHRRIGILGLRLGRDRNTGRVTDER 139 (283)
T ss_pred Ch-HHHHHHHHcCCCEEEEecCCC-------CCCCEEeeCcHHHHHHHHHHHHHcCCCcEEEecCccccccccccccccc
Confidence 22 233445678999998743221 112234566777888899999889999999997532
Q ss_pred ------CcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHc
Q 008904 170 ------DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRL 241 (549)
Q Consensus 170 ------~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~ 241 (549)
.......+.+.+.+++.|++......+.... .........++++..+. .++ |++++...+..+++.+++.
T Consensus 140 ~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~gv~~al~~~ 217 (283)
T cd06279 140 LASATFSVARERLEGYLEALEEAGIDISDVPIWEIPE-NDRASGEEAARELLDASPRPTA-ILCMSDVLALGALQVAREL 217 (283)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCCCChheEEecCC-CchHHHHHHHHHHHcCCCCCcE-EEECCcHHHHHHHHHHHHc
Confidence 1123445677778887775432111111100 11233445555554333 344 3345556667788888888
Q ss_pred CCCCCC
Q 008904 242 GMMDSG 247 (549)
Q Consensus 242 g~~~~~ 247 (549)
|+..++
T Consensus 218 g~~ip~ 223 (283)
T cd06279 218 GLRVPE 223 (283)
T ss_pred CCCCCC
Confidence 875443
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >PRK14987 gluconate operon transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.2 Score=49.05 Aligned_cols=207 Identities=7% Similarity=-0.004 Sum_probs=113.0
Q ss_pred ceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
..-.||+++|.- .++-.....+++-+.++ .|+.+.+ .+...++..-.+....++.++++++|-......
T Consensus 62 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~ 131 (331)
T PRK14987 62 TSRAIGVLLPSLTNQVFAEVLRGIESVTDA--------HGYQTML--AHYGYKPEMEQERLESMLSWNIDGLILTERTHT 131 (331)
T ss_pred CCCEEEEEeCCCcchhHHHHHHHHHHHHHH--------CCCEEEE--ecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 445899999853 22222333444443333 2555544 344444544344445566778888875322212
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l~~~ 182 (549)
. .....+...++|+|...... .+. ... .+.+....-+..+++.|...|-++++++..... ........|.+.
T Consensus 132 ~-~~~~~l~~~~iPvV~~~~~~---~~~-~~~--~V~~Dn~~~~~~a~~~L~~~Gh~~I~~i~~~~~~~~~~R~~Gf~~a 204 (331)
T PRK14987 132 P-RTLKMIEVAGIPVVELMDSQ---SPC-LDI--AVGFDNFEAARQMTTAIIARGHRHIAYLGARLDERTIIKQKGYEQA 204 (331)
T ss_pred H-HHHHHHHhCCCCEEEEecCC---CCC-CCc--eEEeCcHHHHHHHHHHHHHCCCceEEEEcCCCcccHHHHHHHHHHH
Confidence 2 22334566899999753211 111 111 355667777788888888899999999964322 223345777888
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+++.|+..... .+... .....-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 205 l~~~g~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nD~~A~g~~~al~~~g~~vP~disvi 272 (331)
T PRK14987 205 MLDAGLVPYSV-MVEQS--SSYSSGIELIRQARREYPQLDGVF-CTNDDLAVGAAFECQRLGLKVPDDMAIA 272 (331)
T ss_pred HHHcCCCccce-eecCC--CChhhHHHHHHHHHhcCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCccEEE
Confidence 88888631111 11111 1111223345555433 245444 4555667778889999998766544443
|
|
| >cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.098 Score=49.39 Aligned_cols=203 Identities=8% Similarity=0.016 Sum_probs=109.1
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+||+++|.+..+......+++-+.++. + |+.+-+. .. +. .+....+..++++++|-...+. ..
T Consensus 1 ~ig~i~~~~~~~~~~~~~gi~~~~~~~---~----g~~~~~~--~~--~~---~~~~~~l~~~~vdGiI~~~~~~---~~ 63 (265)
T cd01543 1 RVALLVETSSSYGRGVLRGIARYAREH---G----PWSIYLE--PR--GL---QEPLRWLKDWQGDGIIARIDDP---EM 63 (265)
T ss_pred CeEEEecccchhhHHHHHHHHHHHHhc---C----CeEEEEe--cc--cc---hhhhhhccccccceEEEECCCH---HH
Confidence 489999865433333344444333331 2 4454332 22 11 2333445556888888533222 22
Q ss_pred HHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHHHHHHhhc
Q 008904 108 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALGDKLAEI 186 (549)
Q Consensus 108 a~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l~~~~~~~ 186 (549)
...+...++|+|......+. +.+-++.......+..+++.+...|-++++++..... ......+.+.+.+++.
T Consensus 64 ~~~l~~~~~PvV~~~~~~~~------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~ 137 (265)
T cd01543 64 AEALQKLGIPVVDVSGSREK------PGIPRVTTDNAAIGRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEA 137 (265)
T ss_pred HHHHhhCCCCEEEEeCccCC------CCCCEEeeCHHHHHHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHc
Confidence 23445679999987543211 1223456677777888888888889999999864432 1223456778888888
Q ss_pred CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCC-CeEEEEeC
Q 008904 187 RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDS-GYVWIATT 254 (549)
Q Consensus 187 g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~-~~~~i~~~ 254 (549)
|..+............+...-...++++-+. .+++ |++++...+..+++.+++.|+..+ +...++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a-i~~~~d~~a~g~~~~l~~~g~~vp~di~vigfd 207 (265)
T cd01543 138 GYECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKPVG-IFACTDARARQLLEACRRAGIAVPEEVAVLGVD 207 (265)
T ss_pred CCccccccCccccccccHHHHHHHHHHHHhcCCCCcE-EEecChHHHHHHHHHHHHhCCCCCCceEEEeeC
Confidence 8765211110000001112223344444322 3444 444556667778888888887533 44444444
|
Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >PRK11041 DNA-binding transcriptional regulator CytR; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.19 Score=48.59 Aligned_cols=211 Identities=10% Similarity=0.029 Sum_probs=113.5
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
..+.-.||+++|.. ..+...+..+++-+.++ . |+.+.+ .+...+...-......+...++++||=-...
T Consensus 32 ~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~---~-----g~~~~~--~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~ 101 (309)
T PRK11041 32 RNESRTILVIVPDICDPFFSEIIRGIEVTAAE---H-----GYLVLI--GDCAHQNQQEKTFVNLIITKQIDGMLLLGSR 101 (309)
T ss_pred cCCCcEEEEEeCCCcCccHHHHHHHHHHHHHH---C-----CCEEEE--EeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 44557899999853 33333344555544444 1 455543 3444444444455556667788888742221
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--ccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~~~~~~l 179 (549)
....... .......|++......+. ..+++ +.......+...++.|.+.|-++++++...... .....+.|
T Consensus 102 ~~~~~~~-~~~~~~~pvv~~~~~~~~---~~~~~---V~~Dn~~~g~~a~~~l~~~G~~~I~~l~~~~~~~~~~~R~~Gf 174 (309)
T PRK11041 102 LPFDASK-EEQRNLPPMVMANEFAPE---LELPT---VHIDNLTAAFEAVNYLHELGHKRIACIAGPEEMPLCHYRLQGY 174 (309)
T ss_pred CChHHHH-HHHhcCCCEEEEccccCC---CCCCE---EEECcHHHHHHHHHHHHHcCCceEEEEeCCccccchHHHHHHH
Confidence 1111111 122223467765332211 12232 445677777888888888899999999754322 33456778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
.+.+++.|+.+......... .........+.++.+. ..+.|+. ++...+..+++..++.|+..++-++|++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~gv~~al~~~g~~ip~di~vvg 247 (309)
T PRK11041 175 VQALRRCGITVDPQYIARGD--FTFEAGAKALKQLLDLPQPPTAVFC-HSDVMALGALSQAKRMGLRVPQDLSIIG 247 (309)
T ss_pred HHHHHHcCCCCCHHHeEeCC--CCHHHHHHHHHHHHcCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCcceEEEE
Confidence 88888888754321111111 1122334455565443 2455554 4555566788888888875444444443
|
|
| >PRK10401 DNA-binding transcriptional regulator GalS; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.24 Score=48.90 Aligned_cols=207 Identities=7% Similarity=-0.036 Sum_probs=110.1
Q ss_pred CceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
...-.||+++|... .+......++.-+.++ .|+.+- +.+...++..-.+....+.+++++++|-.....
T Consensus 57 ~~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~--------~gy~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~ 126 (346)
T PRK10401 57 QVSDTIGVVVMDVSDAFFGALVKAVDLVAQQ--------HQKYVL--IGNSYHEAEKERHAIEVLIRQRCNALIVHSKAL 126 (346)
T ss_pred CCCCEEEEEeCCCCCccHHHHHHHHHHHHHH--------CCCEEE--EEcCCCChHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 34567999998632 2222333444433333 144443 344444454444445556667888877422111
Q ss_pred HHHHHHHhhhhcCCc-EEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 103 MAHVLSHLANELQVP-LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~~~~iP-~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
....+..+.. ++| ++......+ +..+++ +...+..-+...++.|...|-+++++|..... ......+.|
T Consensus 127 ~~~~~~~~~~--~~p~vV~i~~~~~---~~~~~~---V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 198 (346)
T PRK10401 127 SDDELAQFMD--QIPGMVLINRVVP---GYAHRC---VCLDNVSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRRAGW 198 (346)
T ss_pred ChHHHHHHHh--cCCCEEEEecccC---CCCCCE---EEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCcchHHHHHHH
Confidence 1222334443 355 676543211 111222 34456666777788888889999999975432 344567788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+......... .....-...++++.+. .++.|+ +.+...+..+++.+++.|+..++-+-|
T Consensus 199 ~~al~~~gi~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disv 269 (346)
T PRK10401 199 MSALKEQGIIPPESWIGTGT--PDMQGGEAAMVELLGRNLQLTAVF-AYNDNMAAGALTALKDNGIAIPLHLSI 269 (346)
T ss_pred HHHHHHcCCCCChhheecCC--CChHHHHHHHHHHHcCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 88998888753221111111 1112222344454332 345444 455666778999999999865544443
|
|
| >PRK09492 treR trehalose repressor; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.32 Score=47.22 Aligned_cols=193 Identities=11% Similarity=-0.003 Sum_probs=109.4
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
...-.||+++|.- ..+. ...+.-..+++++. |+.+ .+.++..++....+....+..++++++|-...+.
T Consensus 60 ~~~~~Ig~i~~~~~~~~~---~~~~~~i~~~~~~~-----gy~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 129 (315)
T PRK09492 60 QSDKVVGIIVSRLDSLSE---NQAVRTMLPAFYEQ-----GYDP--IIMESQFSPEKVNEHLGVLKRRNVDGVILFGFTG 129 (315)
T ss_pred CCCCeEEEEecCCcCccc---HHHHHHHHHHHHHc-----CCeE--EEEecCCChHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 3456899999853 2222 22333334444443 4554 4445555555544555556667898888633221
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEec-C--CcccchHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND-D--DQGRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~-~--~~g~~~~~~l 179 (549)
.. ......+++|++...... ..++ .+.++...-+..+++.|...|-++++++... . ..+....+.|
T Consensus 130 ~~---~~~l~~~~~pvv~i~~~~-----~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 198 (315)
T PRK09492 130 IT---EEMLAPWQDKLVLLARDA-----KGFS---SVCYDDEGAIKLLMQRLYDQGHRHISYLGVDHSDVTTGKRRHQAY 198 (315)
T ss_pred cc---HHHHHhcCCCEEEEeccC-----CCCc---EEEECcHHHHHHHHHHHHHcCCCeEEEEcCCcccchhHHHHHHHH
Confidence 11 123344577888764211 1122 3445666667778888888899999999632 2 2334567788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
.+.+++.|+.+... .... ....-...++++....++.|+. .+...+..+++.+++.|+
T Consensus 199 ~~al~~~g~~~~~~--~~~~---~~~~~~~~~~~~l~~~~~ai~~-~~D~~A~g~~~al~~~g~ 256 (315)
T PRK09492 199 LAFCKQHKLTPVAA--LGGL---SMQSGYELVAKVLTPETTALVC-ATDTLALGASKYLQEQGR 256 (315)
T ss_pred HHHHHHcCCCceee--cCCC---CchHHHHHHHHHhhcCCCEEEE-cCcHHHHHHHHHHHHcCC
Confidence 89999888864321 1111 1122223444444445666654 445667778899999886
|
|
| >TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.79 Score=44.22 Aligned_cols=171 Identities=11% Similarity=-0.020 Sum_probs=94.9
Q ss_pred CceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccC
Q 008904 63 GRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP 141 (549)
Q Consensus 63 g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~p 141 (549)
|+.+ .+.++..++..-.+....++.+++.+||= +............+...++|+|.+....+ . .+....+..
T Consensus 28 g~~v--~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~d~~~~---~--~~~~~~V~~ 100 (302)
T TIGR02634 28 GAKV--FVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAYDRLIN---D--ADIDFYLSF 100 (302)
T ss_pred CCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEecCcCC---C--CCccEEEec
Confidence 4555 34556666666666777777888887774 33333333444556678999998743221 1 112234556
Q ss_pred CcHHHHHHHHHHHHHcCCc-EEEEEEecCC--cccchHHHHHHHHhhc----CeEEEEEEccCCCCCCChhhHHHHHHHH
Q 008904 142 NDLYLMSAIAEMVSYFGWG-EVIAIFNDDD--QGRNGVTALGDKLAEI----RCKISYKSALPPDQSVTETDVRNELVKV 214 (549)
Q Consensus 142 s~~~~~~ai~~~l~~~~W~-~v~ii~~~~~--~g~~~~~~l~~~~~~~----g~~v~~~~~~~~~~~~~~~~~~~~l~~l 214 (549)
+....+..+++.|...+-+ +++++..+.. ......+.+++.+++. ++.+....... . ....+....++++
T Consensus 101 d~~~~g~~~~~~L~~~g~~~~i~~i~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l 177 (302)
T TIGR02634 101 DNEKVGEMQARAVLEAAPKGNYFLMGGSPTDNNAKLLRGGQMKVLQPAIDSGDIKIVGDQWVD-G--WLPENALRIMENA 177 (302)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCCCCcchHHHHHHHHHHHhhhccCCCeEEecCcCCC-C--CCHHHHHHHHHHH
Confidence 6777788888888777655 6777764322 2223345566666653 34432211111 1 1122334555554
Q ss_pred hc---CCCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 215 RM---MEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 215 ~~---~~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
.. ..+++|+. .+...+..+++.+++.|+.
T Consensus 178 l~~~~~~~~aI~~-~~D~~A~g~~~al~~~g~~ 209 (302)
T TIGR02634 178 LTANDNKVDAVVA-SNDATAGGAIQALTAQGLA 209 (302)
T ss_pred HHhCCCCccEEEE-CCCchHHHHHHHHHHCCCC
Confidence 32 23454444 4445566788888888863
|
Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter. |
| >cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.76 Score=43.42 Aligned_cols=197 Identities=10% Similarity=0.004 Sum_probs=105.4
Q ss_pred EEEEEeccCC--CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHH
Q 008904 28 NVGAIFSFGT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~ 104 (549)
+||++.+.+. ..+......+..++++.-++. |+.+.+...+ .+. ....++++++|- +..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~----g~~~~~~~~~--~~~--------~~~~~~vdgii~~~~~~~-- 64 (270)
T cd01544 1 RIAIVQWYSEEEELDDPYYLSIRLGIEKRAQEL----GIELTKFFRD--DDL--------LEILEDVDGIIAIGKFSQ-- 64 (270)
T ss_pred CeEEEEeccccccccCccHHHHHHHHHHHHHHc----CCEEEEEecc--chh--------HHhccCcCEEEEecCCCH--
Confidence 5888888442 122233344444444444332 5566554332 111 123457776663 22222
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-------cccchHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-------QGRNGVT 177 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-------~g~~~~~ 177 (549)
.....+...++|+|..... ..+..+++ +..++...+..+++.+.+.|-++++++..... ......+
T Consensus 65 -~~~~~~~~~~~pvV~~~~~---~~~~~~~~---v~~D~~~a~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~R~~ 137 (270)
T cd01544 65 -EQLAKLAKLNPNLVFVDSN---PAPDGFDS---VVPDFEQAVEKALDYLLELGHTRIGFIGGEEKTTDGHEYIEDPRET 137 (270)
T ss_pred -HHHHHHHhhCCCEEEECCC---CCCCCCCE---EEECHHHHHHHHHHHHHHcCCCcEEEECCCcccccccchhhhHHHH
Confidence 2334455678999987432 12222332 44567777888888888889999999975432 2334467
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC----CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM----EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+.+.+.|.. .....+... .+.......++++.+. .++ .|++++...+..+++.+++.|+..++-+.|
T Consensus 138 gf~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~-ai~~~~d~~a~g~~~~l~~~g~~vp~di~v 211 (270)
T cd01544 138 AFREYMKEKGLY-DPELIYIGD--FTVESGYQLMKEALKSLGDNLPT-AFFIASDPMAIGALRALQEAGIKVPEDVSV 211 (270)
T ss_pred HHHHHHHHcCCC-ChheEeeCC--CCHHHHHHHHHHHHhccCCCCCC-EEEEcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 788888887741 100011111 1122223344443322 234 444456667888889999988765543443
|
Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi |
| >TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.5 Score=42.49 Aligned_cols=191 Identities=11% Similarity=-0.005 Sum_probs=105.4
Q ss_pred ceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCch
Q 008904 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 102 (549)
..-.||+++|.- .........++ .+...+. |+.+-+ ..+..++....+....+...+++++|- |....
T Consensus 58 ~~~~Ig~i~~~~~~~~~~~~~~~i---~~~~~~~-----gy~~~i--~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~~~~ 127 (311)
T TIGR02405 58 SDKVVAVIVSRLDSPSENLAVSGM---LPVFYTA-----GYDPII--MESQFSPQLTNEHLSVLQKRNVDGVILFGFTGC 127 (311)
T ss_pred CCCEEEEEeCCcccccHHHHHHHH---HHHHHHC-----CCeEEE--ecCCCChHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 445799999852 22111222222 3333332 455433 344445544334444455668888774 22211
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEec-C--CcccchHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND-D--DQGRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~-~--~~g~~~~~~l 179 (549)
... ....+++|++...... ..++ .+.++...-+..+++.|...|-+++++|... . ..+....+.+
T Consensus 128 ~~~----~l~~~~~p~V~i~~~~-----~~~~---~V~~D~~~~~~~a~~~L~~~Ghr~I~~i~~~~~~~~~~~~R~~gf 195 (311)
T TIGR02405 128 DEE----ILESWNHKAVVIARDT-----GGFS---SVCYDDYGAIELLMANLYQQGHRHISFLGVDPSDKTTGLMRHNAY 195 (311)
T ss_pred CHH----HHHhcCCCEEEEecCC-----CCcc---EEEeCcHHHHHHHHHHHHHcCCCcEEEEccCcccchhHHHHHHHH
Confidence 111 2345678988764311 1122 3456677777788888888999999999632 2 2344567788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
.+.+++.|+..... ... .........++++.+.+++.| ++++...+..+++.+.+.|.
T Consensus 196 ~~a~~~~gi~~~~~---~~~--~~~~~~~~~~~~~l~~~~tAi-~~~~D~~A~g~~~~l~~~g~ 253 (311)
T TIGR02405 196 LAYCESANLEPIYQ---TGQ--LSHESGYVLTDKVLKPETTAL-VCATDTLALGAAKYLQELDR 253 (311)
T ss_pred HHHHHHcCCCceee---eCC--CCHHHHHHHHHHHHhcCCCEE-EECCcHHHHHHHHHHHHcCC
Confidence 99999988752211 111 112222334444433445555 45666677788899999885
|
This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis |
| >COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.021 Score=54.25 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=59.6
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.+.|||+|... |-..| ..++.-.|+.-+|+++.|+.||.+ .++.+. ..-+.|+.+|.+|++|++.++
T Consensus 22 rGvLrV~tins-p~sy~----~~~~~p~G~eYelak~Fa~yLgV~--Lki~~~------~n~dqLf~aL~ng~~DL~Aag 88 (473)
T COG4623 22 RGVLRVSTINS-PLSYF----EDKGGPTGLEYELAKAFADYLGVK--LKIIPA------DNIDQLFDALDNGNADLAAAG 88 (473)
T ss_pred cCeEEEEeecC-cccee----ccCCCccchhHHHHHHHHHHhCCe--EEEEec------CCHHHHHHHHhCCCcceeccc
Confidence 57899998763 21221 234445699999999999999999 998877 246899999999999999999
Q ss_pred eEEeecc
Q 008904 541 VAQLTRV 547 (549)
Q Consensus 541 ~ti~~~r 547 (549)
++-.++|
T Consensus 89 l~~~~~~ 95 (473)
T COG4623 89 LLYNSER 95 (473)
T ss_pred ccCChhH
Confidence 9988877
|
|
| >cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.5 Score=41.16 Aligned_cols=196 Identities=14% Similarity=0.072 Sum_probs=101.2
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+||.+++-. .....+..++..+++++.++. |.++.+ .+...++....+.+.+++++++.+||+. ......++
T Consensus 1 kva~l~~g~-~~D~~~n~~~~~G~~~~~~~~----gv~~~~--~e~~~~~~~~~~~i~~~~~~g~dlIi~~-g~~~~~~~ 72 (258)
T cd06353 1 KVAFVYVGP-IGDQGWNYAHDEGRKAAEKAL----GVEVTY--VENVPEGADAERVLRELAAQGYDLIFGT-SFGFMDAA 72 (258)
T ss_pred CEEEEEeCC-CCccchhHHHHHHHHHHHHhc----CCeEEE--EecCCchHhHHHHHHHHHHcCCCEEEEC-chhhhHHH
Confidence 578888743 212334445555666665542 444444 4444456677777888888899999983 33445555
Q ss_pred HHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc-ccchHHHHHHHHhh
Q 008904 108 SHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ-GRNGVTALGDKLAE 185 (549)
Q Consensus 108 a~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~-g~~~~~~l~~~~~~ 185 (549)
..++..+ ++.++...+..+ - +.-..+.|+... ...++-.++.++.. =.+|++|...... .......|..-++.
T Consensus 73 ~~vA~~~p~~~F~~~d~~~~-~-~Nv~~~~~~~~e-~~ylaG~~Aa~~t~--t~kVG~I~g~~~~~~~~~~~gF~~G~~~ 147 (258)
T cd06353 73 LKVAKEYPDVKFEHCSGYKT-A-PNVGSYFARIYE-GRYLAGVVAGKMTK--TNKVGYVAAFPIPEVVRGINAFALGARS 147 (258)
T ss_pred HHHHHHCCCCEEEECCCCCC-C-CCeeeEechhhH-HHHHHHHHHHHhhc--CCcEEEEcCcccHHHHHHHHHHHHHHHH
Confidence 6666555 444444322111 0 111123333332 22333344444443 3589988754321 12333455554443
Q ss_pred cC--eEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 186 IR--CKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 186 ~g--~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g 242 (549)
.+ +++... +... ..+...-....+.+.+.++++|+-.+.. ..+++++++.|
T Consensus 148 ~~p~~~v~~~--~~g~-~~D~~~a~~~a~~l~~~G~DvI~~~~~~---~g~~~aa~~~g 200 (258)
T cd06353 148 VNPDATVKVI--WTGS-WFDPAKEKEAALALIDQGADVIYQHTDS---PGVIQAAEEKG 200 (258)
T ss_pred HCCCcEEEEE--EecC-CCCcHHHHHHHHHHHHCCCcEEEecCCC---hHHHHHHHHhC
Confidence 33 333322 2111 0122233455566667899988777622 45777888765
|
Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold. |
| >cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.7 Score=39.91 Aligned_cols=204 Identities=13% Similarity=0.038 Sum_probs=101.7
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc-hH-H
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA-VM-A 104 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~-~ 104 (549)
+||+++|... ++-.....++..+.++ . |+.+ .+.+...++..-.+....++.+++++||=.... .. .
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~---~-----gy~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~ 71 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA---I-----GWNL--RILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQ 71 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH---c-----CcEE--EEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH
Confidence 5888888632 2212233333333332 2 4444 344555566555556666777788887753222 21 2
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCC-ceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC-cccchHHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYP-FFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRNGVTALG 180 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~-~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~-~g~~~~~~l~ 180 (549)
..+ ..+...++|+|.+...... .....+ .+-.+.......+..+++.|... |-++++++..... ......+.++
T Consensus 72 ~~~-~~~~~~~iPvV~~d~~~~~-~~~~~~~~~~~v~~D~~~~~~~~~~~L~~~~~G~~~i~~i~~~~~~~~~~r~~~~~ 149 (280)
T cd06315 72 AEL-ELAQKAGIPVVGWHAGPEP-GPIEEPGIFYNVTTDPLAVAEVAALYAIANSGGKAGVVIFTDSRFSIAKAKANAMK 149 (280)
T ss_pred HHH-HHHHHCCCCEEEecCCCCC-CcccCCceeEEecCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCccHHHHHHHHH
Confidence 333 3345679999987432111 000011 13345566777778888887776 8899988864321 1111123444
Q ss_pred HHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC---CCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 181 DKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 181 ~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
..++.. +..+......... .........++++.+. .++ .|++++...+..+++.+++.|+..+
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-ai~~~~D~~A~g~~~~l~~~g~~~p 216 (280)
T cd06315 150 EIIEACKGCTVLSIEDVPIS--RTATRMPALTARLLQRYGDKWT-HSLAINDLYFDYMAPPLASAGRKAD 216 (280)
T ss_pred HHHHhCCCCEEEEecccCcc--hhhhhhHHHHHHHHHhcCcccc-eecccchhhhHHhHHHHHHhcccCC
Confidence 444332 2332111111111 1111111334444322 234 4445555667778888889887644
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein | Back alignment and domain information |
|---|
Probab=94.62 E-value=4.5 Score=38.88 Aligned_cols=162 Identities=7% Similarity=-0.055 Sum_probs=80.8
Q ss_pred CCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccC-CcHHHHHHH
Q 008904 73 AKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP-NDLYLMSAI 150 (549)
Q Consensus 73 ~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~p-s~~~~~~ai 150 (549)
...++..-.+....++++++.+||- |..+.........+...+||+|.+....+. + .....+.. .....++..
T Consensus 38 ~~~d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~~~~~--~---~~~~~v~~~Dn~~~g~~a 112 (302)
T TIGR02637 38 TGTTAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKRGIKVVTWDSGVAP--E---GRNLFLNQASADLIGRTQ 112 (302)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEeCCCCCC--C---ceeEEEecCCHHHHHHHH
Confidence 3456666666677777888887664 433333333334456689999987432211 1 12233333 333344444
Q ss_pred HHHHH-Hc-CCcEEEEEEecCCcc--cchHHHHHHHHhhcC---eEEEEEEccCCCCCCChhhHHHHHHHHhcCCC--eE
Q 008904 151 AEMVS-YF-GWGEVIAIFNDDDQG--RNGVTALGDKLAEIR---CKISYKSALPPDQSVTETDVRNELVKVRMMEA--RV 221 (549)
Q Consensus 151 ~~~l~-~~-~W~~v~ii~~~~~~g--~~~~~~l~~~~~~~g---~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~v 221 (549)
++.+. ++ +-.+|++|..+.... ....+.+.+.++++| .++.... ... .....-...++++.+..+ +.
T Consensus 113 a~~l~~~l~~~~~I~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~L~~~~~~~a 188 (302)
T TIGR02637 113 VQLAAEQIGNGGEIAILSAASTATNQNAWIEIMKKELKDPKYPKVKLVATV--YGD--DDAQKSYQEAQGLLKSYPNLKG 188 (302)
T ss_pred HHHHHHHcCCCcEEEEEECCCCCccHHHHHHHHHHHHhhccCCCCEEEeee--cCC--chHHHHHHHHHHHHHhCCCccE
Confidence 44443 32 226898887543221 123455666665543 3332211 111 112233344555443333 44
Q ss_pred EEEEcchHHHHHHHHHHHHcCCC
Q 008904 222 IVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 222 iil~~~~~~~~~il~~a~~~g~~ 244 (549)
|+. .....+..+++.+++.|..
T Consensus 189 i~~-~~d~~a~ga~~al~~~g~~ 210 (302)
T TIGR02637 189 IIA-PTTVGIKAAAQAVSDAKLI 210 (302)
T ss_pred EEe-CCCchHHHHHHHHHhcCCC
Confidence 443 3345566677778887753
|
This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source. |
| >TIGR02990 ectoine_eutA ectoine utilization protein EutA | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.52 Score=43.38 Aligned_cols=93 Identities=8% Similarity=-0.009 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC---C--CChhhHHHHHHHHhcCCC
Q 008904 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ---S--VTETDVRNELVKVRMMEA 219 (549)
Q Consensus 145 ~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~---~--~~~~~~~~~l~~l~~~~~ 219 (549)
.-+.|+.+-++++|-+|++++. +|-...-+.+.+.+++.|++|.....+.... . .+...+.+.++++...++
T Consensus 106 t~~~A~~~AL~alg~~RIalvT---PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~a 182 (239)
T TIGR02990 106 TPSSAAVDGLAALGVRRISLLT---PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDA 182 (239)
T ss_pred CHHHHHHHHHHHcCCCEEEEEC---CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCC
Confidence 3468899999999999999997 5777788999999999999998765444321 0 123455566666666789
Q ss_pred eEEEEEcchHHHHHHHHHHHH
Q 008904 220 RVIVVHGYSRTGLMVFDVAQR 240 (549)
Q Consensus 220 ~viil~~~~~~~~~il~~a~~ 240 (549)
+.|++.|..-....++.++.+
T Consensus 183 DAifisCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 183 DALFLSCTALRAATCAQRIEQ 203 (239)
T ss_pred CEEEEeCCCchhHHHHHHHHH
Confidence 999999998888888888854
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens. |
| >cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=94.38 E-value=4.7 Score=38.07 Aligned_cols=154 Identities=9% Similarity=0.005 Sum_probs=87.4
Q ss_pred hcCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEec
Q 008904 89 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 168 (549)
Q Consensus 89 ~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~ 168 (549)
..+++++|-.........+.. +...++|+|........ ...+++ +.......+..+++.+...|-+++++|...
T Consensus 54 ~~~vdgiIi~~~~~~~~~~~~-l~~~~iPvV~i~~~~~~--~~~~~~---V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~ 127 (269)
T cd06287 54 ALDIDGAILVEPMADDPQVAR-LRQRGIPVVSIGRPPGD--RTDVPY---VDLQSAATARMLLEHLRAQGARQIALIVGS 127 (269)
T ss_pred ccCcCeEEEecCCCCCHHHHH-HHHcCCCEEEeCCCCCC--CCCCCe---EeeCcHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 557887664221111222333 45569999987542210 112333 334566667778888888899999999643
Q ss_pred C--CcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 169 D--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 169 ~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
. .........+.+.+++.|+...... .... ....+-...++++.+. .+++|+ +.+...+..+++.+++.|+.
T Consensus 128 ~~~~~~~~R~~gf~~a~~~~g~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~gvl~al~~~gl~ 203 (269)
T cd06287 128 ARRNSYLEAEAAYRAFAAEHGMPPVVLR-VDEA--GGEEAGYAACAQLLAQHPDLDALC-VPVDAFAVGAVRAATELGRA 203 (269)
T ss_pred cccccHHHHHHHHHHHHHHcCCCcceeE-ecCC--CChHHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCC
Confidence 2 2334456778888888887532211 1111 1122323445555433 345444 45666778899999999987
Q ss_pred CCCeEEEE
Q 008904 245 DSGYVWIA 252 (549)
Q Consensus 245 ~~~~~~i~ 252 (549)
.+.-+-|+
T Consensus 204 vP~dvsvi 211 (269)
T cd06287 204 VPDQLRVV 211 (269)
T ss_pred CCCceEEE
Confidence 66545444
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >PRK10339 DNA-binding transcriptional repressor EbgR; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=9.8 Score=37.03 Aligned_cols=149 Identities=9% Similarity=0.021 Sum_probs=81.8
Q ss_pred cCcEEEEc-CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEec
Q 008904 90 TDTLAIVG-PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 168 (549)
Q Consensus 90 ~~v~aiiG-p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~ 168 (549)
.+++++|- |..+. .....+...++|++......+ ...++ .+.......+..+++.+...|.++++++...
T Consensus 113 ~~vDgiI~~~~~~~---~~~~~l~~~~~pvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~l~~~G~~~i~~i~~~ 183 (327)
T PRK10339 113 KNVTGILIVGKPTP---ALRAAASALTDNICFIDFHEP---GSGYD---AVDIDLARISKEIIDFYINQGVNRIGFIGGE 183 (327)
T ss_pred ccCCEEEEeCCCCH---HHHHHHHhcCCCEEEEeCCCC---CCCCC---EEEECHHHHHHHHHHHHHHCCCCeEEEeCCc
Confidence 57777774 32222 233445567899998643211 11223 2445666667788888888899999999643
Q ss_pred CC--cccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 169 DD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 169 ~~--~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
.. ........+.+.++..|+ +.....+... .........++++.+. .++. |++++...+..++++++++|+.
T Consensus 184 ~~~~~~~~R~~gf~~~~~~~g~-~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~a-i~~~~D~~A~g~~~al~~~g~~ 259 (327)
T PRK10339 184 DEPGKADIREVAFAEYGRLKQV-VREEDIWRGG--FSSSSGYELAKQMLAREDYPKA-LFVASDSIAIGVLRAIHERGLN 259 (327)
T ss_pred cccchhhHHHHHHHHHHHHcCC-CChhheeecC--cChhHHHHHHHHHHhCCCCCCE-EEECCcHHHHHHHHHHHHcCCC
Confidence 32 233445567777777775 1110001111 1112223344444332 2444 4445556677899999999976
Q ss_pred CCCeEEE
Q 008904 245 DSGYVWI 251 (549)
Q Consensus 245 ~~~~~~i 251 (549)
.++-+-|
T Consensus 260 vP~di~v 266 (327)
T PRK10339 260 IPQDISL 266 (327)
T ss_pred CCCceEE
Confidence 5443333
|
|
| >COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.50 E-value=9.6 Score=35.95 Aligned_cols=208 Identities=9% Similarity=-0.006 Sum_probs=107.4
Q ss_pred CCCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcE-EEEcCC
Q 008904 21 ALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTL-AIVGPQ 99 (549)
Q Consensus 21 ~~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~-aiiGp~ 99 (549)
+...++..||+..|.-.. .++..-=...++.++.- |.+..+... .++...-......++++++. .||++.
T Consensus 20 aa~~~d~~IGis~~d~~~--eRW~~D~~~~~~~~e~~-----g~k~~~q~A--~~~~~~Q~~qien~i~qg~~vlvi~a~ 90 (341)
T COG4213 20 AAAAKDGVIGISMPDLRS--ERWIKDRDAFVKKAEAL-----GAKVDVQSA--DGDEEKQLAQIENMINQGVKVLVIGAI 90 (341)
T ss_pred hhhccCCeEEEEcCChhH--hhhhhhhHHHHHHHHhc-----cchhhhhhh--ccChhHHHHHHHHHHhcCCCEEEEEec
Confidence 467788999999987422 23322222223333332 444444443 45666677788889999775 456899
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEcc--CCcHHHHHHHHHHHHHcC----CcEEEEEEecCC---
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTA--PNDLYLMSAIAEMVSYFG----WGEVIAIFNDDD--- 170 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~--ps~~~~~~ai~~~l~~~~----W~~v~ii~~~~~--- 170 (549)
++.....+-..+...+||+|+| +....+..+.|....- ---..|+.++.+-++.-. |.-+.+=.+.++
T Consensus 91 d~~~l~~~i~~A~~~gikViaY---DRlI~n~dvd~YvsFDN~~VG~lQa~~l~~~lk~k~~~~~gn~~l~~GSp~DnNA 167 (341)
T COG4213 91 DGGVLSNAVEKAKSEGIKVIAY---DRLINNADVDFYVSFDNEKVGELQAKALVKGLKLKPLTSEGNYVLLGGSPDDNNA 167 (341)
T ss_pred cchhHHHHHHHHHHcCCeEEEe---ecccccCCccEEEEecchhHHHHHHHHHHHHhccCCCCCCCCEEEecCCCCCcch
Confidence 9999988889999999999998 2323333333333222 112234555544444332 333333222222
Q ss_pred -ccc-chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHh-c--CCCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 171 -QGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR-M--MEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 171 -~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~-~--~~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
+.. ...+-|+..+..-.+.+......+.- ..+.-...++.+- + .+.+.|+-.-+ ..+.-.+..+...|+.
T Consensus 168 ~lf~~G~m~VLkp~idsGkik~~Ge~~~d~W---~ps~Aq~~men~lta~~~~vdaVvA~nD-gtagGaI~aL~a~Gl~ 242 (341)
T COG4213 168 KLFFAGAMKVLKPLIDSGKIKVVGEQWTDGW---LPSNAQQIMENLLTANYNDIDAVVAPND-GTAGGAIAALKAQGLA 242 (341)
T ss_pred HHHHhcHHHHHHHHhhCCceEEeeecccccc---CHHHHHHHHHHHHhcccCceeEEEcCCC-chhHHHHHHHHhcccC
Confidence 111 12333444444434555444443322 1222223333332 2 23344444333 4455567777777875
|
|
| >COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.41 E-value=12 Score=36.79 Aligned_cols=209 Identities=14% Similarity=0.051 Sum_probs=100.5
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEec-CCC-ChHHHHHHHHHHHhcCcEEEEcCC
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD-AKF-NGFLSIMGALQFMETDTLAIVGPQ 99 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d-~~~-~~~~a~~~~~~l~~~~v~aiiGp~ 99 (549)
...++++..+++.........+.+....+++.+-++. |.+++....+ ... +.....+...++.+++...|++..
T Consensus 30 ~~~~~~~~~~~~~~g~~~D~s~n~~~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~lI~~~g 105 (345)
T COG1744 30 AAAGKKKKVAVIDVGGIDDKSFNQSAYEGLLKAKKEL----GLKVETYYWEYVQSDSEADYERALRALAEDGYDLIFGTG 105 (345)
T ss_pred cccccceEEEEEecCCCCccchhHHHHHHHHHHHHHh----CCceEeeeeeecCCcchhHHHHHHHHHHhcCCCEEEEec
Confidence 3344444444444432222334444444555544443 3445553333 222 345555666667778888888754
Q ss_pred CchHHHHHHHhhhhc-CCcEEecccCCCCCCC--CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEe-cCCcccch
Q 008904 100 SAVMAHVLSHLANEL-QVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN-DDDQGRNG 175 (549)
Q Consensus 100 ~s~~~~~va~~~~~~-~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~-~~~~g~~~ 175 (549)
.. ...++..++..+ ++.++-. +..... ....+.||..-... ++-.++..+.+ -.+++.|.. +-+--...
T Consensus 106 f~-~~d~~~~va~~~Pd~~F~ii---d~~~~~~~Nv~s~~f~~~egay-L~G~~AA~~sk--~~~vG~vgg~~~p~v~~f 178 (345)
T COG1744 106 FA-FSDALEKVAAEYPDVKFVII---DGVVKKEDNVASYVFREYEGAY-LAGVAAAKMSK--SGKVGFVGGMDIPEVNRF 178 (345)
T ss_pred cc-hhhHHHHHHHHCCCCEEEEe---cCccCCCCceEEEEeccccHHH-HHHHHHHHhhc--CCceeEEecccchhhHHH
Confidence 43 444555565555 4444433 222221 23456777664333 33333333333 234444443 22323344
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
...|..-++..+-.+.....+... ..+...-......+.+.++|||+-.+.+.... ++.+|++.+.
T Consensus 179 ~~gF~~Gak~~np~i~v~v~~~gs-f~D~~k~k~~a~~li~~GaDVI~~~ag~~~~g-v~~~A~~~~~ 244 (345)
T COG1744 179 INGFLAGAKSVNPDIKVKVVYVGS-FSDPAKGKEAANALIDQGADVIYPAAGGTGVG-VFQAAKELGA 244 (345)
T ss_pred HHHHHHHHHhhCCCccEEEEEecC-ccChHHHHHHHHHHHhcCCCEEEecCCCCcch-HHHHHHHhCC
Confidence 555555555443322222111111 01222334577788889999998877665443 3336777664
|
|
| >COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.38 E-value=2.3 Score=41.95 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 147 ~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
.+.+.+.++.+|++++-||.+..-.....++.+.+.+++.|+.+.....+.+. ...+....-++.+++.++|.||-.+
T Consensus 17 l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~--P~~~~v~~~~~~~~~~~~D~iIalG 94 (377)
T COG1454 17 LKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPE--PTIETVEAGAEVAREFGPDTIIALG 94 (377)
T ss_pred HHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 35677788889999999999776555668899999999999877665555555 5677788888999999999999876
Q ss_pred ch--HHHHHHHHHHHH
Q 008904 227 YS--RTGLMVFDVAQR 240 (549)
Q Consensus 227 ~~--~~~~~il~~a~~ 240 (549)
.+ -++.+.+.....
T Consensus 95 GGS~~D~AK~i~~~~~ 110 (377)
T COG1454 95 GGSVIDAAKAIALLAE 110 (377)
T ss_pred CccHHHHHHHHHHHhh
Confidence 55 455555544443
|
|
| >TIGR00035 asp_race aspartate racemase | Back alignment and domain information |
|---|
Probab=89.83 E-value=6.1 Score=36.29 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHh-cCcEEEEcCCCchHHHHHHHhhhhcCCcEEec
Q 008904 76 NGFLSIMGALQFME-TDTLAIVGPQSAVMAHVLSHLANELQVPLLSF 121 (549)
Q Consensus 76 ~~~~a~~~~~~l~~-~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 121 (549)
++...+..+.+.+. .++.+++=+.++.... +..+-+..++|+|+.
T Consensus 59 ~~~~~l~~~~~~L~~~g~d~iviaCNTah~~-~~~l~~~~~iPii~i 104 (229)
T TIGR00035 59 RPRPILIDIAVKLENAGADFIIMPCNTAHKF-AEDIQKAIGIPLISM 104 (229)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCccHHHH-HHHHHHhCCCCEech
Confidence 34444444444444 4898888777665443 445556678888863
|
|
| >PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli | Back alignment and domain information |
|---|
Probab=89.70 E-value=8.1 Score=33.63 Aligned_cols=100 Identities=9% Similarity=-0.012 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhc--CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEE
Q 008904 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVI 222 (549)
Q Consensus 145 ~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vi 222 (549)
++...+.+.+...++ ++.++..+.. .++.+.+.+++. |+.++....-+ -+..+...+++.|+++++++|
T Consensus 35 dl~~~l~~~~~~~~~-~ifllG~~~~----~~~~~~~~l~~~yP~l~ivg~~~g~----f~~~~~~~i~~~I~~~~pdiv 105 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGK-RIFLLGGSEE----VLEKAAANLRRRYPGLRIVGYHHGY----FDEEEEEAIINRINASGPDIV 105 (172)
T ss_pred HHHHHHHHHHHHcCC-eEEEEeCCHH----HHHHHHHHHHHHCCCeEEEEecCCC----CChhhHHHHHHHHHHcCCCEE
Confidence 355666666666666 6667775553 566667777665 66666543222 135667888999999999999
Q ss_pred EEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 223 VVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 223 il~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
++.........++...++.. ... +|+..+..
T Consensus 106 ~vglG~PkQE~~~~~~~~~l--~~~-v~i~vG~~ 136 (172)
T PF03808_consen 106 FVGLGAPKQERWIARHRQRL--PAG-VIIGVGGA 136 (172)
T ss_pred EEECCCCHHHHHHHHHHHHC--CCC-EEEEECch
Confidence 99988877777776665532 222 77777643
|
Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process |
| >cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability | Back alignment and domain information |
|---|
Probab=89.62 E-value=17 Score=33.66 Aligned_cols=148 Identities=9% Similarity=-0.015 Sum_probs=85.4
Q ss_pred HHHHHHhcCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH--cCCc
Q 008904 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY--FGWG 160 (549)
Q Consensus 83 ~~~~l~~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~--~~W~ 160 (549)
.+.+.++.++.++|=-............+...++|++......+. ...+++ +......-+..+++.+.. .|-+
T Consensus 44 ~~~~~~~~~vdGvIi~~~~~~~~~~~~~~~~~~~PvV~i~~~~~~--~~~~~~---V~~D~~~~~~~a~~~L~~~~~G~~ 118 (247)
T cd06276 44 NIISNTKGKYSGYVVMPHFKNEIQYFLLKKIPKEKLLILDHSIPE--GGEYSS---VAQDFEKAIYNALQEGLEKLKKYK 118 (247)
T ss_pred HHHHHHhcCCCEEEEecCCCCcHHHHHHhccCCCCEEEEcCcCCC--CCCCCe---EEEccHHHHHHHHHHHHHHhcCCC
Confidence 334445667877773212111122344555578999987532211 112232 444666667778888888 8999
Q ss_pred EEEEEEecC-CcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHH
Q 008904 161 EVIAIFNDD-DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239 (549)
Q Consensus 161 ~v~ii~~~~-~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~ 239 (549)
++++|.... ..+....+.+.+.+++.|+.... .. . ... ..+ ...+ .|++.+...+..+++.++
T Consensus 119 ~Ia~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~---~~-~----~~~-----~~~--~~~~-ai~~~~d~~A~g~~~~l~ 182 (247)
T cd06276 119 KLILVFPNKTAIPKEIKRGFERFCKDYNIETEI---IN-D----YEN-----REI--EKGD-LYIILSDTDLVFLIKKAR 182 (247)
T ss_pred EEEEEecCccHhHHHHHHHHHHHHHHcCCCccc---cc-c----cch-----hhc--cCCc-EEEEeCHHHHHHHHHHHH
Confidence 999997543 23445677888888888875431 11 0 000 001 1224 455566777888999999
Q ss_pred HcCCCCCCeEEE
Q 008904 240 RLGMMDSGYVWI 251 (549)
Q Consensus 240 ~~g~~~~~~~~i 251 (549)
+.|+..++-+=|
T Consensus 183 ~~g~~iP~disv 194 (247)
T cd06276 183 ESGLLLGKDIGI 194 (247)
T ss_pred HcCCcCCceeEE
Confidence 999865543333
|
Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t |
| >TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.59 Score=43.73 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=49.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .+.++ .+.++..++.+++++++|++ ++++.. ++|+.++..|.+|++|+++.+
T Consensus 31 ~~~l~vg~~~--~~~~~--------~~~~~~~~l~~~l~~~~g~~--v~~~~~------~~~~~~~~~l~~g~~Di~~~~ 92 (254)
T TIGR01098 31 PKELNFGILP--GENAS--------NLTRRWEPLADYLEKKLGIK--VQLFVA------TDYSAVIEAMRFGRVDIAWFG 92 (254)
T ss_pred CCceEEEECC--CCCHH--------HHHHHHHHHHHHHHHHhCCc--EEEEeC------CCHHHHHHHHHcCCccEEEEC
Confidence 3568888753 22221 23455679999999999999 888764 379999999999999999976
Q ss_pred eEE
Q 008904 541 VAQ 543 (549)
Q Consensus 541 ~ti 543 (549)
...
T Consensus 93 ~~~ 95 (254)
T TIGR01098 93 PSS 95 (254)
T ss_pred cHH
Confidence 543
|
A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates. |
| >PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A | Back alignment and domain information |
|---|
Probab=89.47 E-value=2.3 Score=36.20 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=61.0
Q ss_pred HHHHHHcCCcEEEEEEecC--CcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHH-HHHhcCCCeEEEEEcc
Q 008904 151 AEMVSYFGWGEVIAIFNDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL-VKVRMMEARVIVVHGY 227 (549)
Q Consensus 151 ~~~l~~~~W~~v~ii~~~~--~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~viil~~~ 227 (549)
++.|...|-+++++|.... .+.....+.|.+.+++.|+........... ......... ..+++..++.|| +.+
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~pdaii-~~~ 76 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDD---DSEDAREAQLLWLRRLRPDAII-CSN 76 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESS---SHHHHHHHHHHHHHTCSSSEEE-ESS
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCC---cchhHHHHHHHHHhcCCCcEEE-EcC
Confidence 4677888999999999332 334455678888999999876544333322 222222222 234434556544 477
Q ss_pred hHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 228 SRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 228 ~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
...+..+++.+.+.|+..++-+.|.
T Consensus 77 ~~~a~~~~~~l~~~g~~vP~di~vv 101 (160)
T PF13377_consen 77 DRLALGVLRALRELGIRVPQDISVV 101 (160)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTSEEE
T ss_pred HHHHHHHHHHHHHcCCcccccccEE
Confidence 7788889999999998655444443
|
... |
| >PRK09860 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.96 E-value=2.7 Score=42.00 Aligned_cols=88 Identities=10% Similarity=0.094 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.-+.+.++.+|.+++.++++.........+.+.+.+++.|+.+.....+.+. ...++.....+.+++.++|.||-.+.
T Consensus 20 ~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~n--p~~~~v~~~~~~~~~~~~D~IiaiGG 97 (383)
T PRK09860 20 TDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPN--PTTENVAAGLKLLKENNCDSVISLGG 97 (383)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCC--cCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4577788999999999888643333346788999999999876543334434 45677888889999999999997655
Q ss_pred h--HHHHHHHHH
Q 008904 228 S--RTGLMVFDV 237 (549)
Q Consensus 228 ~--~~~~~il~~ 237 (549)
+ -++.+.+..
T Consensus 98 GS~iD~AK~ia~ 109 (383)
T PRK09860 98 GSPHDCAKGIAL 109 (383)
T ss_pred chHHHHHHHHHH
Confidence 4 344444433
|
|
| >COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=88.41 E-value=17 Score=32.10 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC--C---CChhhHHHHHHHHhcCCCeEE
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ--S---VTETDVRNELVKVRMMEARVI 222 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~--~---~~~~~~~~~l~~l~~~~~~vi 222 (549)
.|+++-|+.++-+++.++. +|-...-+...+.++.+|+.|.....+.... . ......-++-+++..-++|.|
T Consensus 107 ~Avv~aL~al~a~ri~vlT---PY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~Dai 183 (238)
T COG3473 107 TAVVEALNALGAQRISVLT---PYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAI 183 (238)
T ss_pred HHHHHHHHhhCcceEEEec---cchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeE
Confidence 5778889999999999997 6666777888889999999988665443221 0 011123345566667788999
Q ss_pred EEEcchHHHHHHHHHHHH
Q 008904 223 VVHGYSRTGLMVFDVAQR 240 (549)
Q Consensus 223 il~~~~~~~~~il~~a~~ 240 (549)
++.|..-....++....+
T Consensus 184 FiSCTnlRt~eii~~lE~ 201 (238)
T COG3473 184 FISCTNLRTFEIIEKLER 201 (238)
T ss_pred EEEeeccccHHHHHHHHH
Confidence 998887666666655543
|
|
| >PRK15454 ethanol dehydrogenase EutG; Provisional | Back alignment and domain information |
|---|
Probab=88.20 E-value=3.3 Score=41.57 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.-+.+.++.+|.+++.++.+..-......+.+.+.+++.|+.+.....+.+. .......+.++..++.++|.||-.+.
T Consensus 38 ~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--P~~~~v~~~~~~~r~~~~D~IiavGG 115 (395)
T PRK15454 38 SSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGE--PCITDVCAAVAQLRESGCDGVIAFGG 115 (395)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCC--cCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 5567788899999988776544333345788999999999877544334433 44667888888999999999998776
Q ss_pred hH--HHHHHH
Q 008904 228 SR--TGLMVF 235 (549)
Q Consensus 228 ~~--~~~~il 235 (549)
+. ++.+.+
T Consensus 116 GS~iD~AKai 125 (395)
T PRK15454 116 GSVLDAAKAV 125 (395)
T ss_pred hHHHHHHHHH
Confidence 53 344443
|
|
| >cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism | Back alignment and domain information |
|---|
Probab=87.61 E-value=3.7 Score=41.57 Aligned_cols=86 Identities=9% Similarity=0.044 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
+-+.++++.++.+++.+|++.........+.+.+.+++.|+.+.....+.+. .+.+.+...++.+++.+++.||-.+.
T Consensus 12 ~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIaiGG 89 (414)
T cd08190 12 AEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVE--PTDESFKDAIAFAKKGQFDAFVAVGG 89 (414)
T ss_pred HHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCC--cCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5567788999999999998665444445788899998888876543333433 45667788888888899999988765
Q ss_pred h--HHHHHHH
Q 008904 228 S--RTGLMVF 235 (549)
Q Consensus 228 ~--~~~~~il 235 (549)
+ -++.+.+
T Consensus 90 GSviD~AKai 99 (414)
T cd08190 90 GSVIDTAKAA 99 (414)
T ss_pred ccHHHHHHHH
Confidence 5 3444444
|
Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT |
| >PRK10624 L-1,2-propanediol oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.35 E-value=4.1 Score=40.76 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 147 ~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
...+.+.++.++.+++.+|++....-....+.+.+.+++.|+.+.....+.+. ...+.....++.+++.+++.||-.+
T Consensus 18 l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIaiG 95 (382)
T PRK10624 18 IGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPN--PTIEVVKEGVEVFKASGADYLIAIG 95 (382)
T ss_pred HHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCC--cCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 35577888899999998888654333336788899999888876543334333 3466778888888888999988765
Q ss_pred ch--HHHHHHH
Q 008904 227 YS--RTGLMVF 235 (549)
Q Consensus 227 ~~--~~~~~il 235 (549)
.+ -++.+.+
T Consensus 96 GGS~iD~aK~i 106 (382)
T PRK10624 96 GGSPQDTCKAI 106 (382)
T ss_pred ChHHHHHHHHH
Confidence 54 3444443
|
|
| >cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway | Back alignment and domain information |
|---|
Probab=87.20 E-value=4.2 Score=40.56 Aligned_cols=88 Identities=13% Similarity=0.096 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.-+.++++.++.+++.+|++.........+.+.+.+++.|+++.....+.+. .+...+...++..+..+++.||-.+.
T Consensus 13 ~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~d~IIaiGG 90 (370)
T cd08192 13 KELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPN--PTEAAVEAGLAAYRAGGCDGVIAFGG 90 (370)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4577788889999998888654433335788999999888877543334444 45667888888888899999997655
Q ss_pred h--HHHHHHHHH
Q 008904 228 S--RTGLMVFDV 237 (549)
Q Consensus 228 ~--~~~~~il~~ 237 (549)
+ -++.+++..
T Consensus 91 GSviD~aK~ia~ 102 (370)
T cd08192 91 GSALDLAKAVAL 102 (370)
T ss_pred chHHHHHHHHHH
Confidence 4 455555443
|
NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm |
| >cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea | Back alignment and domain information |
|---|
Probab=86.58 E-value=4.3 Score=38.11 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=64.6
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+||.+-....+.-.....++...++..| |+.++...+..+..|+.++.+.+..++++++++|++.... ..+
T Consensus 122 kVG~I~g~~~~~~~~~~~gF~~G~~~~~------p~~~v~~~~~g~~~D~~~a~~~a~~l~~~G~DvI~~~~~~---~g~ 192 (258)
T cd06353 122 KVGYVAAFPIPEVVRGINAFALGARSVN------PDATVKVIWTGSWFDPAKEKEAALALIDQGADVIYQHTDS---PGV 192 (258)
T ss_pred cEEEEcCcccHHHHHHHHHHHHHHHHHC------CCcEEEEEEecCCCCcHHHHHHHHHHHHCCCcEEEecCCC---hHH
Confidence 6888877754433456788888888877 4567777777777899999999999999999988876522 345
Q ss_pred HHhhhhcCCcEEecc
Q 008904 108 SHLANELQVPLLSFT 122 (549)
Q Consensus 108 a~~~~~~~iP~Is~~ 122 (549)
...+...++..|.+.
T Consensus 193 ~~aa~~~g~~~IG~d 207 (258)
T cd06353 193 IQAAEEKGVYAIGYV 207 (258)
T ss_pred HHHHHHhCCEEEeec
Confidence 556667789888764
|
Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold. |
| >cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor | Back alignment and domain information |
|---|
Probab=86.46 E-value=4.8 Score=40.23 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
+-+.++++.++.+++.+|++.........+.+...+++.|+.+.....+.+. .+.+.+...++.+++.+++.||-.+.
T Consensus 15 ~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIaiGG 92 (376)
T cd08193 15 ARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEAD--PPEAVVEAAVEAARAAGADGVIGFGG 92 (376)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCC--cCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567778888999998888654333345788888999888876543334443 45677888889999889999988766
Q ss_pred h--HHHHHHHHH
Q 008904 228 S--RTGLMVFDV 237 (549)
Q Consensus 228 ~--~~~~~il~~ 237 (549)
+ -++.+++..
T Consensus 93 Gs~iD~aK~ia~ 104 (376)
T cd08193 93 GSSMDVAKLVAV 104 (376)
T ss_pred chHHHHHHHHHH
Confidence 5 344444433
|
5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene. |
| >KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.65 E-value=7.3 Score=37.14 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=71.2
Q ss_pred CCCCceEEccCCcHHHHHH----HHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhh
Q 008904 131 LQYPFFVQTAPNDLYLMSA----IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETD 206 (549)
Q Consensus 131 ~~~~~~~r~~ps~~~~~~a----i~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~ 206 (549)
+.-+|.|-+.||....+.+ +..-++..|.|++.+|.+..-.-....+..++.++++|+.+.......+. .+..+
T Consensus 38 k~~~~af~m~~s~~rfG~gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~e--Ptv~s 115 (465)
T KOG3857|consen 38 KMMSVAFFMIPSTSRFGKGVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPE--PTVGS 115 (465)
T ss_pred ccceeeEEeccchhhhcchhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCC--Cchhh
Confidence 3456777778887766655 34457889999999998766544456788889999999998865555544 45677
Q ss_pred HHHHHHHHhcCCCeEEEEEcch
Q 008904 207 VRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 207 ~~~~l~~l~~~~~~viil~~~~ 228 (549)
+...++-.|+...+.+|-.+.+
T Consensus 116 ~~~alefak~~~fDs~vaiGGG 137 (465)
T KOG3857|consen 116 VTAALEFAKKKNFDSFVAIGGG 137 (465)
T ss_pred HHHHHHHHHhcccceEEEEcCc
Confidence 8888888888888888776554
|
|
| >cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like | Back alignment and domain information |
|---|
Probab=85.46 E-value=6.3 Score=39.25 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
+-+.++++.++.+++.+|++.........+.+.+.+++.|+.+.....+... .+.+++...++.++..+++.||-.+.
T Consensus 12 ~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IiaiGG 89 (370)
T cd08551 12 EKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPN--PTLSNVDAAVAAYREEGCDGVIAVGG 89 (370)
T ss_pred HHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5677778889999999998654433356678889998888876543334433 45677888889998889999887655
Q ss_pred h--HHHHHHHHH
Q 008904 228 S--RTGLMVFDV 237 (549)
Q Consensus 228 ~--~~~~~il~~ 237 (549)
+ -++.+++..
T Consensus 90 Gs~~D~AK~va~ 101 (370)
T cd08551 90 GSVLDTAKAIAL 101 (370)
T ss_pred chHHHHHHHHHH
Confidence 4 445555543
|
Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H. |
| >cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=85.00 E-value=6.1 Score=39.41 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
+-+.+.++.++-+++.+|++.........+.+.+.+++.|+.+.....+.+. ...+.....++.+++.+++.||-.+.
T Consensus 15 ~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~d~IIaiGG 92 (374)
T cd08189 15 AQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPD--PTIENVEAGLALYRENGCDAILAVGG 92 (374)
T ss_pred HHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCC--cCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567778888889998888654333335688889998888876544344444 45667888888999899999997655
Q ss_pred h--HHHHHHHHHH
Q 008904 228 S--RTGLMVFDVA 238 (549)
Q Consensus 228 ~--~~~~~il~~a 238 (549)
+ -++.+++...
T Consensus 93 GS~~D~aK~ia~~ 105 (374)
T cd08189 93 GSVIDCAKAIAAR 105 (374)
T ss_pred ccHHHHHHHHHHH
Confidence 4 4555554433
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. |
| >TIGR02638 lactal_redase lactaldehyde reductase | Back alignment and domain information |
|---|
Probab=84.97 E-value=6.1 Score=39.52 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 147 ~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
...+.+.++.+|.+++.+|++....-....+.+.+.+++.|+.+.....+.+. ...+......+.+++.+++.||-.+
T Consensus 17 l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IiaiG 94 (379)
T TIGR02638 17 IEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPN--PTITVVKAGVAAFKASGADYLIAIG 94 (379)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCC--cCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34567778889999998888654333336788889999888876543333333 4466778888888889999999776
Q ss_pred ch--HHHHHHH
Q 008904 227 YS--RTGLMVF 235 (549)
Q Consensus 227 ~~--~~~~~il 235 (549)
.+ -++.+.+
T Consensus 95 GGSviD~aKai 105 (379)
T TIGR02638 95 GGSPIDTAKAI 105 (379)
T ss_pred ChHHHHHHHHH
Confidence 54 3444443
|
This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase. |
| >cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins | Back alignment and domain information |
|---|
Probab=84.66 E-value=23 Score=30.69 Aligned_cols=101 Identities=13% Similarity=-0.027 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhc--CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCe
Q 008904 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEAR 220 (549)
Q Consensus 143 ~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 220 (549)
..++...+.+.+...+ .++.++....+ .++.+.+.+++. |+.++....-+- ...+-...++.|++++++
T Consensus 31 g~dl~~~ll~~~~~~~-~~v~llG~~~~----~~~~~~~~l~~~yp~l~i~g~~~g~~----~~~~~~~i~~~I~~~~pd 101 (171)
T cd06533 31 GSDLMPALLELAAQKG-LRVFLLGAKPE----VLEKAAERLRARYPGLKIVGYHHGYF----GPEEEEEIIERINASGAD 101 (171)
T ss_pred cHHHHHHHHHHHHHcC-CeEEEECCCHH----HHHHHHHHHHHHCCCcEEEEecCCCC----ChhhHHHHHHHHHHcCCC
Confidence 3345556666665555 56667765543 455555556554 677776432221 133334588999999999
Q ss_pred EEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 221 VIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 221 viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
+|++.+.......++...++.. ..-+++..+.
T Consensus 102 iv~vglG~PkQE~~~~~~~~~l---~~~v~~~vG~ 133 (171)
T cd06533 102 ILFVGLGAPKQELWIARHKDRL---PVPVAIGVGG 133 (171)
T ss_pred EEEEECCCCHHHHHHHHHHHHC---CCCEEEEece
Confidence 9999988887777777766543 3345666543
|
E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan. |
| >cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=84.56 E-value=7 Score=39.00 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.-+.+.++.++.+++.+|++...+.....+.+.+.+++.|+.+.....+.+. .....+.+.++.++..+++.||-.+.
T Consensus 12 ~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIaiGG 89 (375)
T cd08194 12 DETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSE--PTDESVEEGVKLAKEGGCDVIIALGG 89 (375)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCC--cCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4456777778889999998655443336788999999889877644444444 45667888888999899999997665
Q ss_pred h--HHHHHHH
Q 008904 228 S--RTGLMVF 235 (549)
Q Consensus 228 ~--~~~~~il 235 (549)
+ -++.+++
T Consensus 90 GS~~D~AKai 99 (375)
T cd08194 90 GSPIDTAKAI 99 (375)
T ss_pred chHHHHHHHH
Confidence 4 3444444
|
Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. |
| >PRK10200 putative racemase; Provisional | Back alignment and domain information |
|---|
Probab=84.40 E-value=17 Score=33.32 Aligned_cols=86 Identities=12% Similarity=0.022 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHhc-CcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH
Q 008904 76 NGFLSIMGALQFMET-DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV 154 (549)
Q Consensus 76 ~~~~a~~~~~~l~~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l 154 (549)
++...+...++.+.+ |+.+++=|.++.... ...+-+..++|+|+. .++....+
T Consensus 59 ~~~~~l~~~~~~L~~~g~~~iviaCNTah~~-~~~l~~~~~iPii~i-------------------------i~~~~~~~ 112 (230)
T PRK10200 59 KTGDILAEAALGLQRAGAEGIVLCTNTMHKV-ADAIESRCSLPFLHI-------------------------ADATGRAI 112 (230)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCchHHHH-HHHHHHhCCCCEeeh-------------------------HHHHHHHH
Confidence 566666666666554 899999887776555 455666678888863 12233334
Q ss_pred HHcCCcEEEEEEecCCcccchHHHHHHHHhhc-CeEE
Q 008904 155 SYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI-RCKI 190 (549)
Q Consensus 155 ~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~-g~~v 190 (549)
+..+-++|+++..... -....+++.+.+. |+++
T Consensus 113 ~~~~~~~VglLaT~~T---i~s~~Y~~~l~~~~g~~~ 146 (230)
T PRK10200 113 TGAGMTRVALLGTRYT---MEQDFYRGRLTEQFSINC 146 (230)
T ss_pred HHcCCCeEEEeccHHH---HHHhHHHHHHHHhcCCeE
Confidence 4446677777775443 1233444554433 6554
|
|
| >PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=83.76 E-value=4.1 Score=40.55 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
..+.+.++.+| ++.+|++.........+.+.+.+++.|+.+.....+... ....++...++.+++.+++.||-.+.
T Consensus 12 ~~l~~~l~~~g--r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~D~IIaiGG 87 (366)
T PF00465_consen 12 EELGEELKRLG--RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPN--PTLEDVDEAAEQARKFGADCIIAIGG 87 (366)
T ss_dssp GGHHHHHHCTT--EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS---BHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred HHHHHHHHhcC--CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCC--CcHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 45667788887 998998763222336789999999999988665555555 56788899999999999999998776
Q ss_pred h--HHHHHHHHHHHH
Q 008904 228 S--RTGLMVFDVAQR 240 (549)
Q Consensus 228 ~--~~~~~il~~a~~ 240 (549)
+ -++.+++.....
T Consensus 88 GS~~D~aK~va~~~~ 102 (366)
T PF00465_consen 88 GSVMDAAKAVALLLA 102 (366)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHhhcc
Confidence 5 345555555444
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A .... |
| >cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=81.94 E-value=10 Score=37.87 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 147 ~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
...+.++++.++.+++.+|++.........+.+.+.+++.|+.+.....+... .......+.++.++..+++.||-.+
T Consensus 16 l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~d~IIaiG 93 (377)
T cd08188 16 LKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPN--PRDEEVMAGAELYLENGCDVIIAVG 93 (377)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 35567778888999999888654333335678888888888766543333333 3456677888888888999999776
Q ss_pred ch--HHHHHHH
Q 008904 227 YS--RTGLMVF 235 (549)
Q Consensus 227 ~~--~~~~~il 235 (549)
.+ -++.+.+
T Consensus 94 GGsviD~AK~i 104 (377)
T cd08188 94 GGSPIDCAKGI 104 (377)
T ss_pred CchHHHHHHHH
Confidence 54 3444443
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. |
| >cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=81.93 E-value=9.8 Score=38.05 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCc-ccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQ-GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~-g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
.-+.++++.++ +++.+|++.... .....+.+.+.+++.|+.+.....+.+. ....+..+..+.+++.+++.||-.+
T Consensus 15 ~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IiavG 91 (380)
T cd08185 15 NELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPN--PTTTTVMEGAALAREEGCDFVVGLG 91 (380)
T ss_pred HHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCC--CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44667778788 999888865432 3456788888999888877543334444 4566788888888889999999765
Q ss_pred ch--HHHHHHHHH
Q 008904 227 YS--RTGLMVFDV 237 (549)
Q Consensus 227 ~~--~~~~~il~~ 237 (549)
.+ -++.+.+..
T Consensus 92 GGS~iD~aK~ia~ 104 (380)
T cd08185 92 GGSSMDTAKAIAF 104 (380)
T ss_pred CccHHHHHHHHHH
Confidence 54 445544433
|
Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea. |
| >PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria | Back alignment and domain information |
|---|
Probab=81.90 E-value=44 Score=31.05 Aligned_cols=208 Identities=9% Similarity=0.036 Sum_probs=108.6
Q ss_pred ceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC--CChHHHHHHHHHHHhc-CcEEEEc-CCC
Q 008904 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK--FNGFLSIMGALQFMET-DTLAIVG-PQS 100 (549)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~--~~~~~a~~~~~~l~~~-~v~aiiG-p~~ 100 (549)
+.++||++.+..+. +....++++..+++--.. .|.-..+-+. .........+..|.++ .+-|||- ...
T Consensus 1 ~~~kIGivTgtvSq-~ed~~r~Ae~l~~~Yg~~-------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~v 72 (275)
T PF12683_consen 1 EDYKIGIVTGTVSQ-SEDEYRGAEELIKKYGDV-------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAV 72 (275)
T ss_dssp --EEEEEEE--TTT--HHHHHHHHHHHHHHHHH-------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS
T ss_pred CceEEEEEeCCccc-ChHHHHHHHHHHHHhCcc-------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCC
Confidence 36899999877542 345567777777764332 4555554322 2344555555565555 5666553 344
Q ss_pred chHHHHHHHhhh-hcCCcEEecccCC-CCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchH--
Q 008904 101 AVMAHVLSHLAN-ELQVPLLSFTALD-PTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV-- 176 (549)
Q Consensus 101 s~~~~~va~~~~-~~~iP~Is~~~~~-~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~-- 176 (549)
.+.+.+...+=+ +-.|..|+-.... |..-.+.-. +-+.+.....+..++...+.+|-+.++.+.....-+...+
T Consensus 73 pGt~~af~kIkekRpDIl~ia~~~~EDp~~i~~~aD--i~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~ 150 (275)
T PF12683_consen 73 PGTAEAFRKIKEKRPDILLIAGEPHEDPEVISSAAD--IVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMSYELLAR 150 (275)
T ss_dssp ---HHHHHHHHHH-TTSEEEESS--S-HHHHHHHSS--EEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSHHHHH
T ss_pred cchHHHHHHHHhcCCCeEEEcCCCcCCHHHHhhccC--eEeccchhhccHHHHHHHHHcCCceEEEEechhhcchHHHHH
Confidence 455666666543 3467666632221 111011112 3444777788999999999999999988865554444443
Q ss_pred --HHHHHHHhhcCeEEEEEEccCCCCCCChhhH-----HHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 177 --TALGDKLAEIRCKISYKSALPPDQSVTETDV-----RNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 177 --~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~-----~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g 242 (549)
+.+++..++.|++.+....-.+....+.... ..+-+.+++-+.++-+.++.......+++++.+.|
T Consensus 151 Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqfIlE~vp~~i~kYGkdtaff~TN~a~~epllk~~~~~g 223 (275)
T PF12683_consen 151 RRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQFILEDVPKWIKKYGKDTAFFCTNDAMTEPLLKQALEYG 223 (275)
T ss_dssp HHHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHHHHHHHHHHHHHH-S--EEEESSHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHhCCceeEEecCccccHHHHHHHHHcC
Confidence 4455566778998887654433310111111 22334556678899999999888999999998876
|
They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A. |
| >cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD) | Back alignment and domain information |
|---|
Probab=80.98 E-value=12 Score=37.11 Aligned_cols=85 Identities=7% Similarity=0.117 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcc-cchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQG-RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g-~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
.-+.++++.++ +++.+|++...+- ....+.+.+.+++.|+.+.....+.+. .+.++..+..+.+++.+++.||-.+
T Consensus 15 ~~l~~~~~~~g-~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavG 91 (357)
T cd08181 15 EKHGEELAALG-KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEEN--PSLETIMEAVEIAKKFNADFVIGIG 91 (357)
T ss_pred HHHHHHHHHcC-CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCC--cCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34567788888 8998888654322 234678888898888876644334444 4567788888899999999999876
Q ss_pred chH--HHHHHH
Q 008904 227 YSR--TGLMVF 235 (549)
Q Consensus 227 ~~~--~~~~il 235 (549)
.+. ++.+.+
T Consensus 92 GGSviD~aK~i 102 (357)
T cd08181 92 GGSPLDAAKAI 102 (357)
T ss_pred CchHHHHHHHH
Confidence 653 444433
|
1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 549 | ||||
| 3q41_A | 384 | Crystal Structure Of The Glun1 N-Terminal Domain (N | 8e-12 | ||
| 3sm9_A | 479 | Crystal Structure Of Metabotropic Glutamate Recepto | 2e-08 | ||
| 2e4u_A | 555 | Crystal Structure Of The Extracellular Region Of Th | 2e-08 | ||
| 4f11_A | 433 | Crystal Structure Of The Extracellular Domain Of Hu | 2e-07 | ||
| 3lmk_A | 492 | Ligand Binding Domain Of Metabotropoc Glutamate Rec | 3e-07 | ||
| 3h6g_A | 395 | Crystal Structure Of The Glur6 Amino Terminal Domai | 1e-06 | ||
| 3olz_A | 398 | Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At | 2e-06 | ||
| 3ks9_A | 496 | Metabotropic Glutamate Receptor Mglur1 Complexed Wi | 4e-06 | ||
| 1ewk_A | 490 | Crystal Structure Of Metabotropic Glutamate Recepto | 4e-06 | ||
| 3qlt_A | 395 | Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge H | 5e-06 | ||
| 3qel_A | 383 | Crystal Structure Of Amino Terminal Domains Of The | 2e-05 | ||
| 3h5v_A | 394 | Crystal Structure Of The Glur2-atd Length = 394 | 3e-05 | ||
| 2e4z_A | 501 | Crystal Structure Of The Ligand-Binding Region Of T | 4e-05 | ||
| 3mq4_A | 481 | Metabotropic Glutamate Receptor Mglur7 Complexed Wi | 4e-05 | ||
| 2wjw_A | 388 | Crystal Structure Of The Human Ionotropic Glutamate | 5e-05 | ||
| 3n6v_A | 374 | Structure Of The Glua2 Ntd-Dimer Interface Mutant, | 6e-05 | ||
| 3o2j_A | 388 | Structure Of The Glua2 Ntd-Dimer Interface Mutant, | 7e-05 | ||
| 3hsy_A | 376 | High Resolution Structure Of A Dimeric Glur2 N-Term | 7e-05 | ||
| 3kg2_A | 823 | Ampa Subtype Ionotropic Glutamate Receptor In Compl | 8e-05 | ||
| 3qek_A | 384 | Crystal Structure Of Amino Terminal Domain Of The N | 2e-04 |
| >pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd) Length = 384 | Back alignment and structure |
|
| >pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3 Precursor In Presence Of Ly341495 Antagonist Length = 479 | Back alignment and structure |
|
| >pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group Ii Metabotropic Glutamate Receptor Complexed With L-glutamate Length = 555 | Back alignment and structure |
|
| >pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Gaba(B) Receptor Gbr2 Length = 433 | Back alignment and structure |
|
| >pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor Mglur5 Complexed With Glutamate Length = 492 | Back alignment and structure |
|
| >pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer Assembly Length = 395 | Back alignment and structure |
|
| >pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75 Angstrom Resolution Length = 398 | Back alignment and structure |
|
| >pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With Ly341495 Antagonist Length = 496 | Back alignment and structure |
|
| >pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor Subtype 1 Complexed With Glutamate Length = 490 | Back alignment and structure |
|
| >pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge Homodimer Assembly Length = 395 | Back alignment and structure |
|
| >pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda Receptor Subunit Glun1 And Glun2b In Complex With Ifenprodil Length = 383 | Back alignment and structure |
|
| >pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd Length = 394 | Back alignment and structure |
|
| >pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The Group Iii Metabotropic Glutamate Receptor Length = 501 | Back alignment and structure |
|
| >pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With Ly3414 Antagonist Length = 481 | Back alignment and structure |
|
| >pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate Receptor Glur2 Atd Region At 1.8 A Resolution Length = 388 | Back alignment and structure |
|
| >pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a Length = 374 | Back alignment and structure |
|
| >pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a Length = 388 | Back alignment and structure |
|
| >pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal Domain (Ntd) Length = 376 | Back alignment and structure |
|
| >pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823 | Back alignment and structure |
|
| >pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda Receptor Subunit Glun1 Length = 384 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395 | Back alignment and structure |
|---|
Score = 276 bits (708), Expect = 2e-88
Identities = 76/414 (18%), Positives = 152/414 (36%), Gaps = 41/414 (9%)
Query: 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSI 81
VL G IF + + +A + A + IN + +L L+ ++ F +
Sbjct: 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEAS 61
Query: 82 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP 141
A + AI GP + A+ + + N L VP + +S + F+V P
Sbjct: 62 KKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRW-KHQVSDNKDSFYVSLYP 120
Query: 142 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS 201
+ L AI ++V +F W V ++ DD G + L + ++ + +
Sbjct: 121 DFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIKAPSRYNLRLKIRQLPADTK- 178
Query: 202 VTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261
D + L +++ + ++ + A +GMM Y +I TT +D
Sbjct: 179 ----DAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234
Query: 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL----------SNGSIGLNPYG 311
+ S + R ++ + + +W+ +
Sbjct: 235 VEPYRY-----SGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDA 289
Query: 312 LYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQ 371
YD V +++ A++ + + +L + G +F++ I +
Sbjct: 290 ALMYDAVHVVSVAVQ---------------QFPQMTVSSLQCNRHKPWRFGTRFMSLIKE 334
Query: 372 TNMTGLSGPIHFN-QDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEK 424
+ GL+G I FN + D+I++ E G ++IG W SGL++ +K
Sbjct: 335 AHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL-EKIGTWDPASGLNMTESQK 387
|
| >4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433 | Back alignment and structure |
|---|
Score = 272 bits (697), Expect = 4e-86
Identities = 69/425 (16%), Positives = 149/425 (35%), Gaps = 48/425 (11%)
Query: 27 LNVGAIFSFGT-----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSI 81
L++ + G+ A++ A + I ++ +L L + ++D + + +
Sbjct: 15 LSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNES-LLRPYFLDLRLYDTECDNAKGL 73
Query: 82 MGALQFMET--DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQ 138
++ + L + G + +++ + LSF A P L+ +YP+F +
Sbjct: 74 KAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFR 133
Query: 139 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPP 198
T P+D + AI +++ ++ W V + D + L L +IS +
Sbjct: 134 TVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFS- 192
Query: 199 DQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258
D + K++ + R+I+ VF A M S Y WI W
Sbjct: 193 ------NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEP 246
Query: 259 --------FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL-------SNG 303
+S L ++ G + + SK+ + +
Sbjct: 247 SWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRS 306
Query: 304 SIGLNPYGLYAYDTVWMIARAL-KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGG 362
+G + + YAYD +W+IA+ L + + N + G
Sbjct: 307 GVGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFN-----------YTDHTLG 355
Query: 363 KKFLANILQTNMTGLSGPIHF-NQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVP 421
+ L + +TN G++G + F N +R + + ++G ++ + +
Sbjct: 356 RIILNAMNETNFFGVTGQVVFRNGER---MGTIKFTQFQDSRE-VKVGEYNAVADTLEII 411
Query: 422 PEKLY 426
+ +
Sbjct: 412 NDTIR 416
|
| >3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 | Back alignment and structure |
|---|
Score = 280 bits (716), Expect = 4e-85
Identities = 78/520 (15%), Positives = 169/520 (32%), Gaps = 67/520 (12%)
Query: 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ 86
+ +G +F G A + ++ L ++ + ++ F
Sbjct: 3 IQIGGLFPRGAD---QEYSAFRVGMVQFSTSEFRLTPHIDNLEVANS----FAVTNAFCS 55
Query: 87 FMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYL 146
AI G + ++ L V ++ + +PF +Q P+ L
Sbjct: 56 QFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDG----THPFVIQMRPD---L 108
Query: 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETD 206
A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++ + + +
Sbjct: 109 KGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDET 167
Query: 207 VRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPL 266
R+ + + + R +++ + D +G GY +I T D
Sbjct: 168 YRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQ 227
Query: 267 SLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL------SNGSIGLNPYGLYAYDTVWM 320
+ D F+ RW+TL + + YD V +
Sbjct: 228 F-----GGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQV 282
Query: 321 IARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP 380
+ A + Q IS + G + G + + Q + GLSG
Sbjct: 283 MTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQGVEIERALKQVQVEGLSGN 335
Query: 381 IHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLY 440
I F+Q+ ++ + +I+ + +G ++IGYWS + + + S Q
Sbjct: 336 IKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVDKMVLTEDD--------TSGLEQKTV 386
Query: 441 SVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVR 500
V P + N+ + G + GYC+D+ +
Sbjct: 387 VVTTIL---ESPYVMMKANHA------------------ALAGNERYEGYCVDLAAEIAK 425
Query: 501 LLPYAVPYKFIPYGD----GHKNPTYSELINQITTGVSRI 536
+ + G ++ ++ ++ G + I
Sbjct: 426 HCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADI 465
|
| >3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393 | Back alignment and structure |
|---|
Score = 266 bits (681), Expect = 2e-84
Identities = 66/415 (15%), Positives = 144/415 (34%), Gaps = 33/415 (7%)
Query: 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGA 84
L + AI TV G+ R+A+ A++ IN V ++ + + + + + + +
Sbjct: 4 SLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTM 63
Query: 85 LQFMETDTLAIVGPQ-SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPND 143
Q + ++++GP S A +SH+ E ++P + + V P++
Sbjct: 64 CQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYPSN 123
Query: 144 LYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVT 203
+ A++ ++ F + I + + L + +S +
Sbjct: 124 EDVSLAVSRILKSFNYPSASLIC-AKAECLLRLEELVRGFLISKETLSVRMLDDSR---- 178
Query: 204 ETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263
D L ++R + I++ + +V A LGM + Y +I TT +
Sbjct: 179 --DPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLD 236
Query: 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL------SNGSIGLNPYGLYAYDT 317
+ + L +FV N ++ G +D
Sbjct: 237 GIV-----EDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDA 291
Query: 318 VWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGL 377
V ++ A++ L++ I L + +I+ G + + GL
Sbjct: 292 VHVVVSAVR-ELNRSQEIGVKP-----------LACTSANIWPHGTSLMNYLRMVEYDGL 339
Query: 378 SGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKPANR 432
+G + FN + + I+ G+ ++IG W + L++ + R
Sbjct: 340 TGRVEFNSKGQRTNYTLRILEKSRQGH-REIGVWYSNRTLAMNATTLDILELVPR 393
|
| >3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384 | Back alignment and structure |
|---|
Score = 260 bits (664), Expect = 6e-82
Identities = 64/411 (15%), Positives = 128/411 (31%), Gaps = 39/411 (9%)
Query: 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82
P + +G +F A + A + P++L + + F
Sbjct: 7 MPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPPKLLPQIDI-----VNISDSFEMTY 58
Query: 83 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPN 142
AI G ++L+ L V ++ + + Q+ ++
Sbjct: 59 RFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVD--TSNQFVLQLRPELQ 116
Query: 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSV 202
+ A+ ++ ++ W + I+ D D+G + + + D AE +++ + L
Sbjct: 117 E-----ALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKNWQVTAVNILTTT--- 167
Query: 203 TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262
E R + + R++VV S + +L GY +I ID
Sbjct: 168 -EEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL 226
Query: 263 KSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSN------GSIGLNPYGLYAYD 316
S + + +W T + YD
Sbjct: 227 NKFKE-----SGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYD 281
Query: 317 TVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTG 376
V ++A A + Q IS + G + G + Q G
Sbjct: 282 GVKVMAEAFQSLRRQRIDISRRGNA-------GDCLANPAVPWGQGIDIQRALQQVRFEG 334
Query: 377 LSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYR 427
L+G + FN+ + + +I + G ++IGYW+ E L++
Sbjct: 335 LTGNVQFNEKGRRTNYTLHVIEMKHDGI-RKIGYWNEDDKFVPAALEVLFQ 384
|
| >3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376 | Back alignment and structure |
|---|
Score = 251 bits (642), Expect = 7e-79
Identities = 66/399 (16%), Positives = 139/399 (34%), Gaps = 34/399 (8%)
Query: 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ 86
+ +G +F G A + ++ L ++ + ++ F
Sbjct: 3 IQIGGLFPRGA---DQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANS----FAVTNAFCS 55
Query: 87 FMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYL 146
AI G + ++ L V ++ + +PF +Q P+ L
Sbjct: 56 QFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGT----HPFVIQMRPD---L 108
Query: 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETD 206
A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++ + + +
Sbjct: 109 KGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDET 167
Query: 207 VRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPL 266
R+ + + + R +++ + D +G GY +I T D
Sbjct: 168 YRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQ 227
Query: 267 SLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL------SNGSIGLNPYGLYAYDTVWM 320
+ D F+ RW+TL + + YD V +
Sbjct: 228 F-----GGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQV 282
Query: 321 IARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP 380
+ A + Q IS + G + G + + Q + GLSG
Sbjct: 283 MTEAFRNLRKQRIEISRRGNA-------GDCLANPAVPWGQGVEIERALKQVQVEGLSGN 335
Query: 381 IHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSV 419
I F+Q+ ++ + +I+ + +G ++IGYWS + V
Sbjct: 336 IKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVDKMVV 373
|
| >3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 3e-77
Identities = 77/449 (17%), Positives = 150/449 (33%), Gaps = 90/449 (20%)
Query: 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82
P+++N+GA+ S + + A + N + + ++ +++
Sbjct: 2 DPKIVNIGAVLS-----TKKHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALS 56
Query: 83 GALQFMETDTLAIV-----GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFF 136
+ + AI+ P + +S+ A ++P++ T S + F
Sbjct: 57 VCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSF 116
Query: 137 VQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSAL 196
++T P + EM+ F W VI I +DD +GR L L K ++
Sbjct: 117 LRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYE 176
Query: 197 PPDQ-----------------SVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 239
DQ ++ L++ + +EARVI++ V+ A
Sbjct: 177 NLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAA 236
Query: 240 RLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT 299
L M +GYVW+ + ++ PD ++ N
Sbjct: 237 MLDMTGAGYVWLVGEREISGSA-------------------LRYAPDGIIGLQLINGKN- 276
Query: 300 LSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIF 359
+ D V ++A+A+ + N +G +I+
Sbjct: 277 ----------ESAHISDAVAVVAQAIHELFEMENITDPPRG-----------CVGNTNIW 315
Query: 360 DGGKKFLANILQTNM-TGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLS 418
G F ++ + G++G I FN+D Y I+N+ Q+G ++
Sbjct: 316 KTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKL-VQVGIFNG----- 369
Query: 419 VVPPEKLYRKPANRSSSNQHLYSVVWPGG 447
S Q+ ++WPGG
Sbjct: 370 --------------SYIIQNDRKIIWPGG 384
|
| >3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389 | Back alignment and structure |
|---|
Score = 237 bits (604), Expect = 5e-73
Identities = 59/403 (14%), Positives = 134/403 (33%), Gaps = 35/403 (8%)
Query: 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGR-KLSITMHDAK-FNGFLSI 81
P +++G +F TV A + A N++ L+ + N F
Sbjct: 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVT 59
Query: 82 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP 141
AI G + + L+ L ++ + PT + +Q+ ++ A
Sbjct: 60 NAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPS--FPTDADVQFVIQMRPAL 117
Query: 142 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS 201
AI ++SY+ W + + ++ D ++G + + A+ + + +++ +S
Sbjct: 118 KG-----AILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDV 171
Query: 202 VTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261
+ R + ++ + + ++ + + LG GY ++ T I
Sbjct: 172 ---QEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIL 228
Query: 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLS------NGSIGLNPYGLYAY 315
+ + ++ + F+ RW L + L +
Sbjct: 229 LER-----VMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTH 283
Query: 316 DTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMT 375
D + +IA A + Q +S G + G + +
Sbjct: 284 DAILVIAEAFRYLRRQRVDVSRRGSA-------GDCLANPAVPWSQGIDIERALKMVQVQ 336
Query: 376 GLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLS 418
G++G I F+ + + D+ + G ++ GYW+ Y
Sbjct: 337 GMTGNIQFDTYGRRTNYTIDVYEMKVSGS-RKAGYWNEYERFV 378
|
| >1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 5e-67
Identities = 69/437 (15%), Positives = 137/437 (31%), Gaps = 57/437 (13%)
Query: 21 ALKPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPR----VLGGRKLSITMHDA 73
AL P+ + V + + R A++ A + + + G + + D+
Sbjct: 4 ALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDS 63
Query: 74 KFN--GFLSIMGALQFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS- 129
S++ + I+GP A ++ LA+ +P+LS AL
Sbjct: 64 DCGNRALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQH 123
Query: 130 -PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRC 188
+Y + AP + + + + W +++DD RN L +
Sbjct: 124 KDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQE 183
Query: 189 KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248
+ + S D+ T+ ++V+ RV+++ S T + VA R GM Y
Sbjct: 184 EGLHTSIYSFDE--TKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDY 241
Query: 249 VWIATTWLST------FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLS- 301
+ ++ + ++ T+ F +
Sbjct: 242 AFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVE 301
Query: 302 ----NGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALS 357
N +N + +D + + AL L G +
Sbjct: 302 KQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKK--------------------- 340
Query: 358 IFDGGKKFLANILQTNMTGLSGPIHF--NQDRSLLHPSYDIINV--IEHGYPQQIGYWSN 413
G K + G++G + N DR + + +I + +E G + IG +
Sbjct: 341 ---DGGKIIQQTWNRTFEGIAGQVSIDANGDR---YGDFSVIAMTDVEAGTQEVIGDYFG 394
Query: 414 YSG-LSVVPPEKLYRKP 429
G + P K P
Sbjct: 395 KEGRFEMRPNVKYPWGP 411
|
| >3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Length = 364 | Back alignment and structure |
|---|
Score = 205 bits (521), Expect = 3e-61
Identities = 50/395 (12%), Positives = 121/395 (30%), Gaps = 50/395 (12%)
Query: 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMG 83
P + + I G +A+K A + + + R + M++ ++ +
Sbjct: 2 PPSIGIAVILV-----GTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRIC 56
Query: 84 ALQFMETDTLAIVGPQS---AVMAHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQ 138
L + +V +A +L ++ + P+L + + F Q
Sbjct: 57 DL-MSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQ 115
Query: 139 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPP 198
P+ S + ++ + W + ++ V + + + L
Sbjct: 116 FGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLL 175
Query: 199 DQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258
D S + +++ +++ +I+++ +F+VA +G+ GY WI + ++
Sbjct: 176 DMS-LDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAG 234
Query: 259 FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTV 318
D+ P + L D +
Sbjct: 235 DTDTVPS-----------------EFPTGLISVSYDEWDYGLPA----------RVRDGI 267
Query: 319 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLS 378
+I A L + + I + N ++ G
Sbjct: 268 AIITTAASDMLSEHSFIPEPKSSCYNTHEKRI---------YQSNMLNRYLINVTFEG-- 316
Query: 379 GPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413
+ F++D +HP II + + +++G W +
Sbjct: 317 RDLSFSEDGYQMHPKLVIILLNKERKWERVGKWKD 351
|
| >1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 9e-55
Identities = 61/457 (13%), Positives = 130/457 (28%), Gaps = 79/457 (17%)
Query: 27 LNVGAIFSFGTVNGQVS----RIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-----NG 77
L V + + S A++ A + + P +L G + + + ++ +
Sbjct: 3 LTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSD 62
Query: 78 FLSIMGALQFMETD-TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPF 135
+ + A+ +GP A + +VPLL+ A + Y
Sbjct: 63 TAAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYAL 122
Query: 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL--GDKLAEIRCKISYK 193
+T P+ + L + + GW + D G + +R +++
Sbjct: 123 TTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNIT 182
Query: 194 SALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253
L VR RVI + + +A G+ YV+
Sbjct: 183 VNHQEFVEGDPDHYPKLLRAVRRK-GRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHL 241
Query: 254 TWLSTFIDSKSPLS------------LKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL- 300
+ S L ++ A + PD+ +F+ + L
Sbjct: 242 DVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLA 301
Query: 301 ------SNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLG 354
+ N +D + + +A+ L QG T++
Sbjct: 302 DKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVT------------------ 343
Query: 355 ALSIFDGGKKFLANILQTNMTGLSGPIHF--NQDRSLLHPSYDIINVIEHGYP-QQIGYW 411
G+ + + G++G + N DR + + ++ + + +
Sbjct: 344 ------DGENITQRMWNRSFQGVTGYLKIDRNGDR---DTDFSLWDMDPETGAFRVVLNY 394
Query: 412 SNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGV 448
+ S + E + WP G
Sbjct: 395 NGTSQELMAVSEH----------------KLYWPLGY 415
|
| >3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} PDB: 2e4z_A* Length = 481 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-30
Identities = 73/440 (16%), Positives = 141/440 (32%), Gaps = 92/440 (20%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM----------------- 88
AM A D INSDP +L L + D ++ +L F+
Sbjct: 49 AMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGE 108
Query: 89 ------ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQTAP 141
+ ++G + ++ +++++ Q+P +S+ + P LS +Y FF + P
Sbjct: 109 PPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVP 168
Query: 142 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIR-CKISYKSALPPDQ 200
D + A+ ++V GW V + ++ G GV + E I+ +P ++
Sbjct: 169 PDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQER 228
Query: 201 SVTETDVRNELVKV-RMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259
D + ++ +R +V+ + A+R + ++W+ + +
Sbjct: 229 KDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQV-GHFLWVGSDSWGSK 287
Query: 260 IDSKSPLSLKTAKSILGALTLRQHTPD-------------SKRRRD--FVSRW------- 297
I+ GA+T++ RR+ F W
Sbjct: 288 INPLHQHE----DIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCK 343
Query: 298 ---------NTLSNGSIGLNPYGL----------YAYDTVWMIARAL-KLFLDQGNTISF 337
+T + + D V+ +A AL + D
Sbjct: 344 LTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRG 403
Query: 338 SNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDII 397
G L K++ N+ G P+ FN++ YDI
Sbjct: 404 VCPEMEQAGGKKLL------------KYIRNVNFNGSAG--TPVMFNKNGD-APGRYDIF 448
Query: 398 N--VIEHGYPQQ--IGYWSN 413
P IG W++
Sbjct: 449 QYQTTNTSNPGYRLIGQWTD 468
|
| >2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Length = 555 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 74/442 (16%), Positives = 149/442 (33%), Gaps = 98/442 (22%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM----------------- 88
AM A D+IN D +L G KL + + D ++ +L+F+
Sbjct: 47 AMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDG 106
Query: 89 --------ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQT 139
++G + ++ +++L Q+P +S+ + LS +Y +F +T
Sbjct: 107 SYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFART 166
Query: 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIR-CKISYKSALPP 198
P D Y A+AE++ +F W V + ++ D G G+ A + C I+ +
Sbjct: 167 VPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNIC-IATAEKVGR 225
Query: 199 DQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT-TW 255
D +++ + + ARV+V+ S + A R+ + + W+A+ W
Sbjct: 226 SNIRKSYD---SVIRELLQKPNARVVVLFMRSDDSRELIAAANRVN---ASFTWVASDGW 279
Query: 256 LSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR---------------W--- 297
++ + + GA+TL + ++ + W
Sbjct: 280 -----GAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQK 334
Query: 298 -------------NTLSNGSIGLNPYGL-----YAYDTVWMIARAL-KLFLDQGNTISFS 338
+ +I + Y + + V+ +A AL K+ +
Sbjct: 335 FQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKL 394
Query: 339 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN----MTGLSGPIHFNQDRSLLHPSY 394
D G ++L I T G + F+ Y
Sbjct: 395 CDAMKILDGKKLYK-----------EYLLKIQFTAPFNPNKGADSIVKFDTFGD-GMGRY 442
Query: 395 DIIN-VIEHGYPQQ--IGYWSN 413
++ N G +G+W+
Sbjct: 443 NVFNLQQTGGKYSYLKVGHWAE 464
|
| >3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 73/438 (16%), Positives = 144/438 (32%), Gaps = 90/438 (20%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM----------------- 88
AM A D+IN D +L G KL + + D ++ +L+F+
Sbjct: 46 AMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDG 105
Query: 89 --------ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQT 139
++G + ++ +++L Q+P +S+ + LS +Y +F +T
Sbjct: 106 SYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFART 165
Query: 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD 199
P D Y A+AE++ +F W V + ++ D G G+ A + I+ +
Sbjct: 166 VPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRS 225
Query: 200 QSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT-TWL 256
D +++ + + ARV+V+ S + A R + W+A+ W
Sbjct: 226 NIRKSYD---SVIRELLQKPNARVVVLFMRSDDSRELIAAASRANA---SFTWVASDGW- 278
Query: 257 STFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR---------------WNTL- 300
++ + + GA+TL + ++ + W
Sbjct: 279 ----GAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKF 334
Query: 301 ---------------SNGSIGLNPYGL-----YAYDTVWMIARALKLFLDQGNTISFSND 340
+ +I + Y + + V+ +A AL +
Sbjct: 335 QCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLC 394
Query: 341 TKLNGLGGGTLNLGALSIFDGGKK--FLANILQTNMTGLSGPIHFNQDRSLLHPSYDIIN 398
+ L G L L K F A + F+ Y++ N
Sbjct: 395 DAMKILDGKKLYKDYL------LKINFTAPFNPNKDAD--SIVKFDTFGD-GMGRYNVFN 445
Query: 399 -VIEHGYPQQ--IGYWSN 413
G +G+W+
Sbjct: 446 FQNVGGKYSYLKVGHWAE 463
|
| >3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Length = 496 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 9e-28
Identities = 72/443 (16%), Positives = 153/443 (34%), Gaps = 98/443 (22%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDT------------- 92
AM D IN+DP +L L + D+ ++ +++ +++F+
Sbjct: 54 AMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGINRC 113
Query: 93 ----------------LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPF 135
++GP S+ +A + +L +P ++++A LS Y +
Sbjct: 114 LPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY 173
Query: 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIR-CKISYKS 194
F++ P+D A+ ++V + W V A+ + + G +G+ A + A+ I++
Sbjct: 174 FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLS-IAHSD 232
Query: 195 ALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254
+ + D ++ R+ +ARV+V T + +RLG++ + I +
Sbjct: 233 KIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGE-FSLIGSD 291
Query: 255 WLSTFIDSKSPLSLKTAKSILGALTLRQHTPD-------------SKRRRD--FVSRWNT 299
+ + + G +T++ +P+ R+ F W
Sbjct: 292 GWADRDEVIEGYEV----EANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQH 347
Query: 300 LSN----GSIGLNPYGL--------------------YAYDTVWMIARAL-KLFLDQGNT 334
G + NP + + ++ +A L +
Sbjct: 348 RFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPG 407
Query: 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPS 393
D D G K L +++++ G+SG + F++
Sbjct: 408 HVGLCDAMKP--------------ID-GSKLLDFLIKSSFIGVSGEEVWFDEKGD-APGR 451
Query: 394 YDIIN--VIEHGYPQQ--IGYWS 412
YDI+N E +G W
Sbjct: 452 YDIMNLQYTEANRYDYVHVGTWH 474
|
| >3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Length = 364 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 8e-16
Identities = 34/298 (11%), Positives = 92/298 (30%), Gaps = 29/298 (9%)
Query: 40 GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDT-LAIVGP 98
G+ + D +N + + G + + D + ++ D +A++
Sbjct: 22 GRALNAGARLYFDWLNLNGGING-ETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTV 80
Query: 99 Q--SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156
+ V A + + E ++PL+ +++ P + + + +
Sbjct: 81 VGTANVEALMREGVLAEARLPLVGPATGASSMT--TDPLVFPIKASYQQEIDKMITALVT 138
Query: 157 FGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM 216
G + ++ +D G+ +T + L I+ ++ P +V + K+
Sbjct: 139 IGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPR----NTANVGPAVDKLLA 194
Query: 217 MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKS---PLSLKTAKS 273
+ + I + + + G + ID L +
Sbjct: 195 ADVQAIFLGATAEPAAQFVRQYRARGG----EAQLLGLS---SIDPGILQKVAGLDAVRG 247
Query: 274 ILGALTLRQHTPD-----SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALK 326
A P+ + R+F + + L+ + + ++A A++
Sbjct: 248 YSLA----LVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIR 301
|
| >3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Length = 387 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 8e-16
Identities = 59/426 (13%), Positives = 134/426 (31%), Gaps = 55/426 (12%)
Query: 25 EVLNVGAIFSF-GTV-NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM 82
E + +G I S+ R + A + IN+ +LGGR L + D + ++
Sbjct: 4 EAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVT 63
Query: 83 GALQFMETD-TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPFFVQTA 140
A + + A+ G + + +S A + +V ++ L L+ + + +
Sbjct: 64 AAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLR 123
Query: 141 PNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY--KSALPP 198
P+ + +A + I + + G++ V + L R ++++ +
Sbjct: 124 PSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPAL 183
Query: 199 DQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258
+ D + ++ E + + + G+ V T
Sbjct: 184 YK----LDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAGRQVVSMLTGEPE 239
Query: 259 FIDSKSPLSLKTAKSILGALTLRQ--HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYD 316
+++ ++ G + + D+ R FV + + L Y+
Sbjct: 240 YLNP------LKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKEDPFV--GSLVGYN 291
Query: 317 TVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTG 376
T+ +A A + K G + + + +
Sbjct: 292 TLTAMAVAFE---------------KAGG--------------TESETLVETLKDMAFST 322
Query: 377 LSGPIHFN-QDRSLLHPSYDIINVIEHGYPQQIGY-WSNYSGLSVVPPEKLYRK--PANR 432
GP+ F D ++ + + + W G SV+PP ++ PA
Sbjct: 323 PMGPLSFRASDHQSTMGAW--VGRTALRDGKGVMVDWRYVDGGSVLPPPEVVSAWRPAGE 380
Query: 433 SSSNQH 438
+ H
Sbjct: 381 GHHHHH 386
|
| >4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Length = 368 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 52/309 (16%), Positives = 105/309 (33%), Gaps = 23/309 (7%)
Query: 25 EVLNVGAIFSF-GTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSI 81
+ VG I G G+ A+K + G+K+ + + D +
Sbjct: 5 DTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDT---VAGKKIEVILKDDAAIPDNTK 61
Query: 82 MGALQFMETDT-LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTA 140
A + + D I G A + LA + +VP + A ++ + P+ V+T+
Sbjct: 62 RLAQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIIT-ERSPYIVRTS 120
Query: 141 PNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ 200
I + + G +V + +D G + + ++ +I + +P
Sbjct: 121 FTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLAN 180
Query: 201 SVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260
D L +++ + + V + G G+ SG I
Sbjct: 181 ----PDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPG------ 230
Query: 261 DSKSPLSLKTA-KSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDT 317
D L + + LG +T ++ S ++FV+ + G + YD
Sbjct: 231 DVMDDDLLNSMGDAALGVVTAHMYSAAHPSAMNKEFVAAYKKEFGQRPGF--MAVGGYDG 288
Query: 318 VWMIARALK 326
+ ++ ALK
Sbjct: 289 IHLVFEALK 297
|
| >4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Length = 375 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 41/375 (10%), Positives = 106/375 (28%), Gaps = 48/375 (12%)
Query: 25 EVLNVGAIFSF-GTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSI 81
L VG + + GT G+ ++ LGGR +S D + +
Sbjct: 15 GALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGK---LGGRSISFVKVDDESAPPKAT 71
Query: 82 MGALQFMETDT-LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPFFVQT 139
+ ++++ ++G + +A + +A E +P + A ++ P +T
Sbjct: 72 ELTTKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRT 131
Query: 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD 199
+ + + A + + G + + + G V+ + ++ +
Sbjct: 132 SFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP 191
Query: 200 QSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259
+ ++ L ++ ++ + L + G +L+
Sbjct: 192 D----VEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANL---GIPLWGPGFLT-- 242
Query: 260 IDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVW 319
D + I L D+ + FV + + + + +D
Sbjct: 243 -DGVEAAAGPAGDGIKTVLHY-VSDLDNAENQAFVKSFEAAYKIPPDV--FAVQGWDAGQ 298
Query: 320 MIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG 379
++ +K K+ A + + G
Sbjct: 299 LLDAGVK---------------------------AVGGDVAKRKELNAAMAAASFASPRG 331
Query: 380 PIHFNQDRSLLHPSY 394
P + + + Y
Sbjct: 332 PFKLSAAHNPVQNFY 346
|
| >1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Length = 346 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 50/368 (13%), Positives = 111/368 (30%), Gaps = 50/368 (13%)
Query: 40 GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99
G + + A DIN+ + G KL +D + ++ A + + ++G
Sbjct: 19 GDMEFNGARQAIKDINAKGGIKG-DKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHL 77
Query: 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSYFG 158
+ S + + + ++S A +P L+ Y ++TA D A+ ++
Sbjct: 78 CSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVK 137
Query: 159 WGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME 218
+ I + G ++ D L + + + E D + +++
Sbjct: 138 PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG----EKDFSALIARLKKEN 193
Query: 219 ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS-KSPLSLKTA-KSILG 276
+ GY + A+ +G + T ++ + + A + G
Sbjct: 194 IDFVYYGGYYPEMGQMLRQARSVG--------LKTQFMGP--EGVGNASLSNIAGDAAEG 243
Query: 277 ALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335
L D + V G PY Y V +A AL+
Sbjct: 244 MLVTMPKRYDQDPANQGIVDALKADKKDPSG--PYVWITYAAVQSLATALE--------- 292
Query: 336 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYD 395
G+ + ++ + GP+++++ L +
Sbjct: 293 -----------RTGSDE---------PLALVKDLKANGANTVIGPLNWDEKGDLKGFDFG 332
Query: 396 IINVIEHG 403
+ G
Sbjct: 333 VFQWHADG 340
|
| >3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Length = 419 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 60/441 (13%), Positives = 120/441 (27%), Gaps = 71/441 (16%)
Query: 20 GALKPEVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFN 76
A + + +G +G + ++ A D+IN+ +LG R + + D +
Sbjct: 8 QAQSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILG-RPIELVFADTQSK 66
Query: 77 GFLSIMGALQ-FMETD-TLAIVGPQ--SAVMAHVLSHLANELQVPLLS--FTALDPTLSP 130
G ++ + Q ++ D A++ A L +A + V + A+ +
Sbjct: 67 GVDVVIQSAQRLIDRDNASALIAGYNLENGTA--LHDVAADAGVIAMHANTVAVHDEMVK 124
Query: 131 LQYPFF---VQTAPNDLYLMSAIAEMVSYFGWGEV-------IAIFNDD-DQGRNGVTAL 179
+ Q P + + + IAI N A+
Sbjct: 125 SDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAI 184
Query: 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVA 238
D E +S + +D L K+R VIVV + + + +
Sbjct: 185 RDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQF 240
Query: 239 QRLGM---MDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQH-TPDSKRRRDFV 294
+ Y + F D + +G T + F
Sbjct: 241 MTDPTNSLVYLQYGASL----AAFRD-------IAGDNSVGVTYATVLGTLQDEMGDAFA 289
Query: 295 SRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLG 354
+ G + G Y ++ + A G + +D +
Sbjct: 290 KAYKE-RYGDLSSTASGCQTYSALYAYSIAAA---LAGGPGAPYDDVQ------------ 333
Query: 355 ALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNY 414
K + G G + F+ D N G P +
Sbjct: 334 -------NKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFDK 386
Query: 415 SG-LSVVPPEKL----YRKPA 430
+ ++ P ++ P
Sbjct: 387 AEDGVLIAPAPYKKAGFKMPP 407
|
| >3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Length = 386 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 8e-11
Identities = 48/338 (14%), Positives = 118/338 (34%), Gaps = 30/338 (8%)
Query: 1 MNLWWLVSIFSFCIGTAIQGALKPEVLNVGAIFSF-GTV--NGQVSRIAMKAAQDDINSD 57
M + + + + +G S G GQ + A +I
Sbjct: 4 MQQTKTLIVALATMLAG--VTAAQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-- 59
Query: 58 PRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDT-LAIVGPQ--SAVMAHVLSHLANEL 114
G K++ D + + + A + + + ++G + L +A E
Sbjct: 60 -----GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLP--LIDIAAEA 112
Query: 115 QVPLLSFTALDPTLSPLQ--YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQG 172
+ PL++ A ++P+ + + PND + AI + ++ G +V I D G
Sbjct: 113 KTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYG 172
Query: 173 RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 232
L ++ +++ ++ V +++K+ + + + +
Sbjct: 173 EGYYKVLAAAAPKLGFELTTHEVYAR----SDASVTGQVLKIIATKPDAVFIASAGTPAV 228
Query: 233 MVFDVAQRLGMMDSGYVWIATTWLS-TFIDSKSPL---SLKTAKSILGALTLRQHTPDSK 288
+ + G G ++ + FI ++ ++ GA + +P K
Sbjct: 229 LPQKALRERGF--KGAIYQTHGVATEEFIKLGGKDVEGAIFAGEAFSGAEDMPADSPFRK 286
Query: 289 RRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALK 326
+ FV + +NG +G++ +D++ ++ A+
Sbjct: 287 VKARFVDAYKA-ANGGAAPTIFGVHLWDSMTLVENAIP 323
|
| >3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Length = 356 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 55/366 (15%), Positives = 111/366 (30%), Gaps = 55/366 (15%)
Query: 40 GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99
G + + A DIN+ + G ++ I + D + I A +F+ +VG
Sbjct: 19 GAQIQKGAEQAAKDINAAGGING-EQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHA 77
Query: 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSYFG 158
++ ++ S + E + ++ A +P + +T D + + +F
Sbjct: 78 NSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFK 137
Query: 159 WGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME 218
+V I + G+ + + D + K++
Sbjct: 138 DAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAG 193
Query: 219 ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS-KSPLSLKTA-KSILG 276
+I G ++ A G + +S D S A ++ G
Sbjct: 194 VSIIYWGGLHTEAGLIIRQAADQG--------LKAKLVSG--DGIVSNELASIAGDAVEG 243
Query: 277 ALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNP--YGLYAYDTVWMIARALKLFLDQGN 333
L P ++ V ++ + G NP Y LY+Y + IA A K
Sbjct: 244 TLNTFGPDPTLRPENKELVEKFK-----AAGFNPEAYTLYSYAAMQAIAGAAK------- 291
Query: 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPS 393
G++ +K + + + G I F++ P
Sbjct: 292 -------------AAGSVE---------PEKVAEALKKGSFPTALGEISFDEKGDPKLPG 329
Query: 394 YDIINV 399
Y +
Sbjct: 330 YVMYEW 335
|
| >3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Length = 375 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 61/414 (14%), Positives = 137/414 (33%), Gaps = 57/414 (13%)
Query: 25 EVLNVGAIFS----FGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLS 80
+ + +G I + ++GQ A+K A D + G+ + + D + ++
Sbjct: 3 DSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGK---VNGKPIEVVYADHQNKADIA 59
Query: 81 IMGALQFMETDTLAIV--GPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFV 137
A ++M+ L ++ G SA + +A E + ++ A TL+ P+ V
Sbjct: 60 ASKAREWMDRGGLDLLVGGTNSATALSMNQ-VAAEKKKVYINIGAGADTLTNEQCTPYTV 118
Query: 138 QTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALP 197
A + + L V G + D G+ D + K+ + P
Sbjct: 119 HYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHP 178
Query: 198 PDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257
+D + L++ + +A+++ + + A+ G+ + + L
Sbjct: 179 LSA----SDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTMKLAA----LL 230
Query: 258 TFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDT 317
FI+ L L+T + ++ T + + R + R+ Y +
Sbjct: 231 MFINDVHALGLETTQGLVL--TDSWYWNRDQASRQWAQRYFAKMKKMPSS--LQAADYSS 286
Query: 318 VWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGL 377
V +A++ K +A + + +
Sbjct: 287 VTTYLKAVQ---------------AAGS--------------TDSDKVMAQLKKMKIDDF 317
Query: 378 SGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGY-WSNYSGLSVVPPEKLYRKPA 430
+ D S++H Y ++E P + W Y ++ +P E+ +
Sbjct: 318 YAKGYIRTDGSMIHDMY----LMEVKKPSESKEPWDYYKVVATIPGEQAFTTKQ 367
|
| >3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Length = 391 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 32/302 (10%)
Query: 40 GQVSRIAMKAAQDDINSDPRVLGG---RKLSITMHDAKFNGFLSIMGALQFMETDT-LAI 95
G+ + + A N ++ D +N + +F + +AI
Sbjct: 21 GKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAI 80
Query: 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAE- 152
+G +A + + ++ +S + S L PF AP+ +
Sbjct: 81 IGWGTADTEKLSD-QVDTDKITYIS-----ASYSAKLLVKPFNFYPAPDYSTQACSGLAF 134
Query: 153 MVSYFGWGEVIAIFNDDDQ-GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL 211
+ S FG G++ ++ R+ + A+ + ++ LP TE D
Sbjct: 135 LASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRA--TEADAERIA 192
Query: 212 VKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTA 271
++ + + + ++ ++G+ + W S +
Sbjct: 193 REMLAADPDYVWCGNTISSCSLLGRAMAKVGL---DAFLLTNVWGF------DERSPQLI 243
Query: 272 KS-------ILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARA 324
+ D + + +N + + VW++ +A
Sbjct: 244 GEGGYGKVFGISPFIYPMFGQDVEGIQTIFEAARMNGVSEDQINLRVVQGFVNVWLLIKA 303
Query: 325 LK 326
++
Sbjct: 304 IE 305
|
| >3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Length = 392 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 30/227 (13%), Positives = 70/227 (30%), Gaps = 9/227 (3%)
Query: 21 ALKPEVLNVGAIFSF-GTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNG 77
+L + + + + G G A++ N V G + + D ++N
Sbjct: 2 SLGQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPG-VVFNCVVRDDQYNN 60
Query: 78 FLSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFV 137
+ + ++ + + + L L EL++P + + + P +
Sbjct: 61 ANTQRFFEEAVDRFKIPVFLSYATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIF 120
Query: 138 QTAPNDLYLMSAIAE-MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSAL 196
+ + A+ E + +V + + GR V E+ +I +
Sbjct: 121 LPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEV 180
Query: 197 PPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243
D L + +V + + A+RLG+
Sbjct: 181 GS----GNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGL 223
|
| >3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Length = 379 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 54/415 (13%), Positives = 127/415 (30%), Gaps = 57/415 (13%)
Query: 25 EVLNVGAIFS----FGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLS 80
+ +G + + G+ S A++ A +D+ G+ + + D + ++
Sbjct: 5 GQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGK---ALGQPVKLVSADYQMKTDVA 61
Query: 81 IMGALQFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQ 138
+ A ++ + D + AI ++ A +++L + + A + + +
Sbjct: 62 LSIAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIG 121
Query: 139 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPP 198
N ++ + + G+ + D G A+ +L +I P
Sbjct: 122 FLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPF 181
Query: 199 DQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258
+ D + L++ + A++IV + + A+ G+ + T
Sbjct: 182 ET----QDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQKVGGMIDILT 237
Query: 259 FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTV 318
+ S L+ + A + + D R R F R+ N G Y
Sbjct: 238 DVKS---AGLRVMQGQEYATSFYWNMDD--RTRAFAKRFYAKMGKMPTNNQAG--GYSAA 290
Query: 319 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGK--KFLANILQTNMTG 376
+A+ + D K +L I
Sbjct: 291 LQYLKAVN---------------AIGS-------------KDPQKVFAYLKTI--KFDDA 320
Query: 377 LSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGY-WSNYSGLSVVPPEKLYRKPA 430
++ L+ Y ++ P+ W Y ++ + PE+ + +
Sbjct: 321 VTRHGTLRPGGRLVRDMY----LVRAKKPEDQKGDWDYYDVVATIGPEQAFGPLS 371
|
| >3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Length = 358 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 51/368 (13%), Positives = 105/368 (28%), Gaps = 56/368 (15%)
Query: 40 GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDT-LAIVGP 98
G+V + A + D N+ V GR + I D++ + + A F++ + ++G
Sbjct: 21 GRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGD 79
Query: 99 Q--SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY 156
+ MA + + +P LS TA P P+ + + A +
Sbjct: 80 FSSTVSMA--AGSIYGKEGMPQLSPTAAHPDYIK-ISPWQFRAITTPAFEGPNNAAWMIG 136
Query: 157 FGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM 216
G+ V I D G + A + +PP + + ++
Sbjct: 137 DGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPG----NRRFDDVIDEIED 192
Query: 217 MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS-KSPLSLKTA-KSI 274
+ I + + G A + + SP + ++
Sbjct: 193 EAPQAIYLAMAYEDAAPFLRALRARG--------SALPVYGS--SALYSPKFIDLGGPAV 242
Query: 275 LGALTLRQHTPDSKR--RRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 332
G + +FVS + TL + + YD V ++ A+ +
Sbjct: 243 EGVRLATAFVLGASDPVVVEFVSAYETLYGAIP--TLFAAHGYDAVGIMLAAVG----RA 296
Query: 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSLLH 391
+ + T G++G F+ +
Sbjct: 297 GP---EVT---------------------RESLRDALAATDRYAGVTGITRFDPETRETT 332
Query: 392 PSYDIINV 399
+ V
Sbjct: 333 KILTRLVV 340
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 8e-08
Identities = 49/411 (11%), Positives = 109/411 (26%), Gaps = 136/411 (33%)
Query: 168 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227
+ Q A + CKI + + VT+ + +
Sbjct: 251 LNVQNAKAWNAF-----NLSCKILLTTR---FKQVTDFLSAATTTHISLDHHS------- 295
Query: 228 SRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDS 287
M + ++ Y+ L + + +P L SI+
Sbjct: 296 -----MTLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRL----SIIAESI-------- 337
Query: 288 KRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGN-----------TIS 336
RD ++ W+ + + + ++ L+ ++
Sbjct: 338 ---RDGLATWDN-------------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV- 380
Query: 337 FSNDTKLNGLGGGTLNLGALSIFDGG--------------KKFLANILQTNMT-GLSGPI 381
F + L LS+ K L T + I
Sbjct: 381 FPPSAHI------PTIL--LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-I 431
Query: 382 HF-----NQDRSLLH----PSYDIINVIEHGY---PQQIGYWSNYSG--LSVVPP----- 422
+ ++ LH Y+I + P Y+ ++ G L +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 423 --EKLY-------RK------PANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIG 467
++ +K N S S + + + ++ N+ + R+
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL------KFYKPYICDNDPKYERL- 544
Query: 468 VPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHK 518
+ DF+ K+ +++ D+ A L+ + I + + HK
Sbjct: 545 ---VNAILDFLPKI-EENLICSKYTDLLRIA--LMA---EDEAI-FEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 32/253 (12%), Positives = 79/253 (31%), Gaps = 71/253 (28%)
Query: 189 KISYKSALP--PDQSVTETDVRN------ELVKVRMMEARVIVVHGYSRTGLMVFD---- 236
+ YK L D V D ++ ++ ++ ++ S T L +F
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT-LRLFWTLLS 73
Query: 237 ----VAQRL--GMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRR 290
+ Q+ ++ Y ++ + + + + P S
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKT---EQRQP---------------------SMMT 109
Query: 291 RDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGT 350
R ++ + + L N + Y + + +AL L + ++G+ G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVL------IDGVLG-- 160
Query: 351 LNLGALSIFDGGKKFLA-NILQTN--MTGLSGPIHF------NQDRSLLHPSYDIINVIE 401
GK ++A ++ + + I + N ++L ++ I+
Sbjct: 161 ----------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 402 HGYPQQIGYWSNY 414
+ + + SN
Sbjct: 211 PNWTSRSDHSSNI 223
|
| >3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B Length = 374 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 60/422 (14%), Positives = 117/422 (27%), Gaps = 67/422 (15%)
Query: 25 EVLNVGAIFSF-GTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSI 81
+ L + I+ G + + + + + L GRK+ + D + LS
Sbjct: 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSK 62
Query: 82 MGALQFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPFFVQT 139
+ + D +G S+ A +A E + L+ A+ ++ + +T
Sbjct: 63 AALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRT 122
Query: 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ-GRNGVTALGDKLAEIRCKISYKSALPP 198
N + A + G IA D GR+GV A + LA+ ++ + +P
Sbjct: 123 GRNSSQDAISNAVAIGKQ--GVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPT 180
Query: 199 DQSVTETDVRNELVKVR------MMEARVIVVHGYSRTGLMVFDVAQ--RLGMMDSGYVW 250
TD ++ + + V+ L R G+ S
Sbjct: 181 TT----TDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGN 236
Query: 251 IATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPY 310
I + K + GA P + V+ N +
Sbjct: 237 ILPA----------LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDF--F 284
Query: 311 GLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANIL 370
+ + A++ K +K +A +
Sbjct: 285 TAGGFSAAMAVVTAVQ---------------KAKS--------------TDTEKLIAAME 315
Query: 371 QTNMTGLSGPIHFN-QDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRKP 429
G + F +D L Y V W+ + + E++
Sbjct: 316 GMEFDTPKGKMVFRKEDHQALQSMY-HFKVKVDP----AVAWAVLEPVRELKIEEMNIPI 370
Query: 430 AN 431
N
Sbjct: 371 KN 372
|
| >1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Length = 385 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 45/311 (14%), Positives = 96/311 (30%), Gaps = 16/311 (5%)
Query: 21 ALKPEVLNVGAIFSF-GT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNG 77
E +G +FS G + R A + +N + V G R + D +
Sbjct: 2 GSHQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGG-RPIETLSQDPGGDP 60
Query: 78 FLSIMGALQFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFTAL-DPTLSPLQYPF 135
+ A F+ + +VG + + + L T SP
Sbjct: 61 DRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSP--NIV 118
Query: 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 195
+ APN A ++ ++G V+ I +D R + + + +
Sbjct: 119 YGGPAPNQNSAP-LAAYLIRHYG-ERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIY 176
Query: 196 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255
+P S + D++ + ++ A V+ ++ R + T
Sbjct: 177 IPLYPS--DDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTT 234
Query: 256 LSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAY 315
+ + + A+ + + D+ R FV + + + + AY
Sbjct: 235 SEAEV---AKMESDVAEGQVVVAPYFS-SIDTPASRAFVQACHGFFPENATITAWAEAAY 290
Query: 316 DTVWMIARALK 326
++ RA +
Sbjct: 291 WQTLLLGRAAQ 301
|
| >4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* Length = 371 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 50/312 (16%), Positives = 111/312 (35%), Gaps = 25/312 (8%)
Query: 25 EVLNVGAIFSF-GT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD-AKFNGFLS 80
+ + VG I + G + G+ ++ + A + + + G + D N S
Sbjct: 4 DTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNK---VAGHTVEFVYRDEVSPNPAQS 60
Query: 81 IMGALQFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQT 139
A + + + + + G A ++ L E +VP++ A +++ + P+ V+T
Sbjct: 61 KALAQELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITE-KSPYIVRT 119
Query: 140 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD 199
+ A++ G +V +D G + TA K+ +P
Sbjct: 120 SFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLS 179
Query: 200 QSVTETDVRNELVKVRMMEARVIVVH---GYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256
TD + +++ A +I G G + + G+ G ++T +
Sbjct: 180 T----TDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDN--GLKAGGVKLMSTGDV 233
Query: 257 STFIDSKSPLSLKTAKSILGALTLRQ--HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYA 314
+ ++ A LG L+ + DS + F++ + + A
Sbjct: 234 ---VTEPDLPNIGEA--GLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAA 288
Query: 315 YDTVWMIARALK 326
YD +I + ++
Sbjct: 289 YDGARLIYKMIE 300
|
| >3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Length = 366 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 59/399 (14%), Positives = 137/399 (34%), Gaps = 79/399 (19%)
Query: 40 GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDT-LAIVGP 98
G++ ++ A ++ + + G ++ + + D + + A + ++ + LAI+G
Sbjct: 33 GRMVWEGIQIAHEEKPT----VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGE 88
Query: 99 Q--SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVS 155
+ +A ++ +A E +VP+++ + +P ++ F + D + +A+A
Sbjct: 89 VASAHSLA--IAPIAEENKVPMVTPASTNPLVT-QGRKFVSRVCFIDPFQGAAMAVFAYK 145
Query: 156 YFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK 213
G V +F D D +K E+ ++ + D +L
Sbjct: 146 NLGAKRV-VVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRS-----GDQDFSAQLSV 199
Query: 214 VRMMEARVIVVHGY-SRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS-KSPLSLKTA 271
I + GY L+ Q G L+ D +P ++
Sbjct: 200 AMSFNPDAIYITGYYPEIALIS---RQ---ARQLG---FTGYILAG--DGADAPELIEIG 248
Query: 272 -KSILGALTLRQHTPDSKRR---RDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKL 327
+++ G L + P + + FV + YD ++ A++
Sbjct: 249 GEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGKEP--AALNALGYDAYMVLLDAIE- 305
Query: 328 FLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQD 386
G+ + +K I +T N G SG I+ +++
Sbjct: 306 -------------------RAGSFD---------REKIAEEIRKTRNFNGASGIINIDEN 337
Query: 387 RSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKL 425
+ +N++++G + +V+ P+ L
Sbjct: 338 GDAIKSVV--VNIVKNG---------SVDFEAVINPDDL 365
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| 3kg2_A | 823 | Glutamate receptor 2; ION channel, membrane protei | 100.0 | |
| 3o21_A | 389 | Glutamate receptor 3; periplasmatic binding protei | 100.0 | |
| 4gpa_A | 389 | Glutamate receptor 4; PBP fold, ligand-gated ION c | 100.0 | |
| 3sm9_A | 479 | Mglur3, metabotropic glutamate receptor 3; structu | 100.0 | |
| 3ks9_A | 496 | Mglur1, metabotropic glutamate receptor 1; glutama | 100.0 | |
| 2e4u_A | 555 | Metabotropic glutamate receptor 3; G-protein-coupl | 100.0 | |
| 3om0_A | 393 | Glutamate receptor, ionotropic kainate 5; membrane | 100.0 | |
| 3h6g_A | 395 | Glutamate receptor, ionotropic kainate 2; membrane | 100.0 | |
| 4f11_A | 433 | Gamma-aminobutyric acid type B receptor subunit 2; | 100.0 | |
| 3hsy_A | 376 | Glutamate receptor 2; ligand-gated ION channel, sy | 100.0 | |
| 3mq4_A | 481 | Mglur7, metabotropic glutamate receptor 7; glutama | 100.0 | |
| 1jdp_A | 441 | NPR-C, atrial natriuretic peptide clearance recept | 100.0 | |
| 1dp4_A | 435 | Atrial natriuretic peptide receptor A; periplasmic | 100.0 | |
| 3saj_A | 384 | Glutamate receptor 1; rossman fold, ION channel, m | 100.0 | |
| 3qek_A | 384 | NMDA glutamate receptor subunit; amino terminal do | 100.0 | |
| 3qel_B | 364 | Glutamate [NMDA] receptor subunit epsilon-2; ION c | 100.0 | |
| 3i45_A | 387 | Twin-arginine translocation pathway signal protei; | 100.0 | |
| 3h5l_A | 419 | Putative branched-chain amino acid ABC transporter | 100.0 | |
| 3ipc_A | 356 | ABC transporter, substrate binding protein (amino; | 100.0 | |
| 4f06_A | 371 | Extracellular ligand-binding receptor; PSI-biology | 100.0 | |
| 3td9_A | 366 | Branched chain amino acid ABC transporter, peripl | 100.0 | |
| 1usg_A | 346 | Leucine-specific binding protein; leucine-binding | 100.0 | |
| 3hut_A | 358 | Putative branched-chain amino acid ABC transporter | 100.0 | |
| 3i09_A | 375 | Periplasmic branched-chain amino acid-binding Pro; | 100.0 | |
| 3eaf_A | 391 | ABC transporter, substrate binding protein; PSI2, | 100.0 | |
| 4evq_A | 375 | Putative ABC transporter subunit, substrate-bindi | 100.0 | |
| 3n0w_A | 379 | ABC branched chain amino acid family transporter, | 100.0 | |
| 3lkb_A | 392 | Probable branched-chain amino acid ABC transporter | 100.0 | |
| 4gnr_A | 353 | ABC transporter substrate-binding protein-branche | 100.0 | |
| 3lop_A | 364 | Substrate binding periplasmic protein; protein str | 100.0 | |
| 3n0x_A | 374 | Possible substrate binding protein of ABC transpo | 100.0 | |
| 4eyg_A | 368 | Twin-arginine translocation pathway signal; PSI-bi | 100.0 | |
| 3sg0_A | 386 | Extracellular ligand-binding receptor; structural | 100.0 | |
| 1pea_A | 385 | Amidase operon; gene regulator, receptor, binding | 100.0 | |
| 3snr_A | 362 | Extracellular ligand-binding receptor; structural | 100.0 | |
| 2h4a_A | 325 | YRAM (HI1655); perplasmic binding protein, lipopro | 99.94 | |
| 3ckm_A | 327 | YRAM (HI1655), LPOA; periplasmic-binding protein, | 99.94 | |
| 1pb7_A | 292 | N-methyl-D-aspartate receptor subunit 1; ligand bi | 99.13 | |
| 2rc8_A | 294 | Glutamate [NMDA] receptor subunit 3A; membrane pro | 99.08 | |
| 2a5s_A | 284 | N-methyl-D-aspartate receptor nmdar2A subunit, NMD | 99.01 | |
| 4gvo_A | 243 | LMO2349 protein; structural genomics, IDP05245, L- | 98.94 | |
| 3g3k_A | 259 | Glutamate receptor, ionotropic kainate 2; membrane | 98.9 | |
| 4h5g_A | 243 | Amino acid ABC superfamily ATP binding cassette tr | 98.85 | |
| 2v3u_A | 265 | Glutamate receptor delta-2 subunit; postsynaptic m | 98.78 | |
| 1yae_A | 312 | Glutamate receptor, ionotropic kainate 2; kainate | 98.77 | |
| 1mqi_A | 263 | Glutamate receptor 2; GLUR2, ligand binding core, | 98.74 | |
| 3i6v_A | 232 | Periplasmic His/Glu/Gln/Arg/opine family-binding; | 98.68 | |
| 3kbr_A | 239 | Cyclohexadienyl dehydratase; pseudomonas aeruginos | 98.53 | |
| 3kzg_A | 237 | Arginine 3RD transport system periplasmic binding | 98.51 | |
| 3k4u_A | 245 | Binding component of ABC transporter; structural g | 98.48 | |
| 3tql_A | 227 | Arginine-binding protein; transport and binding pr | 98.47 | |
| 1lst_A | 239 | Lysine, arginine, ornithine-binding protein; amino | 98.44 | |
| 3del_B | 242 | Arginine binding protein; alpha and beta protein ( | 98.42 | |
| 3hv1_A | 268 | Polar amino acid ABC uptake transporter substrate | 98.42 | |
| 2iee_A | 271 | ORF2, probable ABC transporter extracellular-bindi | 98.4 | |
| 4f3p_A | 249 | Glutamine-binding periplasmic protein; ssgcid, str | 98.4 | |
| 4dz1_A | 259 | DALS D-alanine transporter; D-alanine binding, per | 98.39 | |
| 3brq_A | 296 | HTH-type transcriptional regulator ASCG; transcrip | 98.39 | |
| 4eq9_A | 246 | ABC transporter substrate-binding protein-amino A | 98.38 | |
| 3ksm_A | 276 | ABC-type sugar transport system, periplasmic COMP; | 98.37 | |
| 2h3h_A | 313 | Sugar ABC transporter, periplasmic sugar-binding p | 98.33 | |
| 1wdn_A | 226 | GLNBP, glutamine binding protein; closed form, com | 98.32 | |
| 2y7i_A | 229 | STM4351; arginine-binding protein; HET: ARG; 1.90A | 98.29 | |
| 1ii5_A | 233 | SLR1257 protein; membrane protein; HET: GLU; 1.60A | 98.27 | |
| 1dbq_A | 289 | Purine repressor; transcription regulation, DNA-bi | 98.25 | |
| 3mpk_A | 267 | Virulence sensor protein BVGS; venus flytrap, sens | 98.24 | |
| 3d02_A | 303 | Putative LACI-type transcriptional regulator; peri | 98.23 | |
| 3brs_A | 289 | Periplasmic binding protein/LACI transcriptional; | 98.23 | |
| 2rjo_A | 332 | Twin-arginine translocation pathway signal protei; | 98.22 | |
| 2qh8_A | 302 | Uncharacterized protein; conserved domain protein, | 98.21 | |
| 3h7m_A | 234 | Sensor protein; histidine kinase sensor domain, ki | 98.18 | |
| 2qu7_A | 288 | Putative transcriptional regulator; structural gen | 98.13 | |
| 3gbv_A | 304 | Putative LACI-family transcriptional regulator; NY | 98.13 | |
| 2q88_A | 257 | EHUB, putative ABC transporter amino acid-binding | 98.12 | |
| 3rot_A | 297 | ABC sugar transporter, periplasmic sugar binding; | 98.12 | |
| 2pvu_A | 272 | ARTJ; basic amino acid binding protein, ABC transp | 98.11 | |
| 3l49_A | 291 | ABC sugar (ribose) transporter, periplasmic substr | 98.11 | |
| 3c3k_A | 285 | Alanine racemase; structural genomics, protein str | 98.1 | |
| 2pyy_A | 228 | Ionotropic glutamate receptor bacterial homologue; | 98.1 | |
| 2fn9_A | 290 | Ribose ABC transporter, periplasmic ribose-bindin; | 98.1 | |
| 2x7x_A | 325 | Sensor protein; transferase, sensor histidine kina | 98.09 | |
| 3lkv_A | 302 | Uncharacterized conserved domain protein; ATPase b | 98.09 | |
| 2fep_A | 289 | Catabolite control protein A; CCPA, transcriptiona | 98.09 | |
| 1tjy_A | 316 | Sugar transport protein; protein-ligand complex, s | 98.09 | |
| 3dbi_A | 338 | Sugar-binding transcriptional regulator, LACI FAM; | 98.07 | |
| 3lft_A | 295 | Uncharacterized protein; ABC, ATPase, cassette, L- | 98.07 | |
| 2iks_A | 293 | DNA-binding transcriptional dual regulator; escher | 98.06 | |
| 3l6u_A | 293 | ABC-type sugar transport system periplasmic compo; | 98.06 | |
| 3d8u_A | 275 | PURR transcriptional regulator; APC91343.1, vibrio | 98.03 | |
| 2fvy_A | 309 | D-galactose-binding periplasmic protein; periplasm | 98.01 | |
| 2vha_A | 287 | Periplasmic binding transport protein; periplasmic | 98.01 | |
| 3o74_A | 272 | Fructose transport system repressor FRUR; dual tra | 98.01 | |
| 3qax_A | 268 | Probable ABC transporter arginine-binding protein; | 98.0 | |
| 3m9w_A | 313 | D-xylose-binding periplasmic protein; xylose bindi | 97.99 | |
| 2ioy_A | 283 | Periplasmic sugar-binding protein; ribose binding | 97.97 | |
| 1jx6_A | 342 | LUXP protein; protein-ligand complex, signaling pr | 97.97 | |
| 2vk2_A | 306 | YTFQ, ABC transporter periplasmic-binding protein | 97.96 | |
| 3k4h_A | 292 | Putative transcriptional regulator; structural gen | 97.96 | |
| 3o1i_D | 304 | Periplasmic protein TORT; ligand free, two compone | 97.95 | |
| 2v25_A | 259 | Major cell-binding factor; antigen, adhesin, aspar | 97.95 | |
| 2rgy_A | 290 | Transcriptional regulator, LACI family; 11011J, NY | 97.94 | |
| 3g1w_A | 305 | Sugar ABC transporter; sugar-binding protein, baci | 97.94 | |
| 4i62_A | 269 | Amino acid ABC transporter, periplasmic amino ACI | 97.94 | |
| 2o20_A | 332 | Catabolite control protein A; CCPA, transcriptiona | 97.93 | |
| 8abp_A | 306 | L-arabinose-binding protein; binding proteins; HET | 97.93 | |
| 2h0a_A | 276 | TTHA0807, transcriptional regulator; repressor, st | 97.93 | |
| 3bbl_A | 287 | Regulatory protein of LACI family; protein structu | 97.91 | |
| 2yln_A | 283 | Putative ABC transporter, periplasmic binding Pro | 97.91 | |
| 1xt8_A | 292 | Putative amino-acid transporter periplasmic solut | 97.9 | |
| 3h75_A | 350 | Periplasmic sugar-binding domain protein; protein | 97.9 | |
| 1qpz_A | 340 | PURA, protein (purine nucleotide synthesis repress | 97.88 | |
| 3gv0_A | 288 | Transcriptional regulator, LACI family; transcript | 97.88 | |
| 3clk_A | 290 | Transcription regulator; 11017J, PSI-II, NYSGXRC, | 97.86 | |
| 3k9c_A | 289 | Transcriptional regulator, LACI family protein; PS | 97.84 | |
| 3egc_A | 291 | Putative ribose operon repressor; structural genom | 97.83 | |
| 2yjp_A | 291 | Putative ABC transporter, periplasmic binding Pro | 97.82 | |
| 2hsg_A | 332 | Glucose-resistance amylase regulator; CCPA, transc | 97.79 | |
| 3jy6_A | 276 | Transcriptional regulator, LACI family; NYSGXRC, P | 97.77 | |
| 3gyb_A | 280 | Transcriptional regulators (LACI-family transcript | 97.77 | |
| 3g85_A | 289 | Transcriptional regulator (LACI family); transcrip | 97.73 | |
| 3hcw_A | 295 | Maltose operon transcriptional repressor; RNA-bind | 97.73 | |
| 3kjx_A | 344 | Transcriptional regulator, LACI family; LACL famil | 97.72 | |
| 3tb6_A | 298 | Arabinose metabolism transcriptional repressor; tr | 97.71 | |
| 3kke_A | 303 | LACI family transcriptional regulator; structural | 97.69 | |
| 3qk7_A | 294 | Transcriptional regulators; structural genomics, N | 97.67 | |
| 3e3m_A | 355 | Transcriptional regulator, LACI family; structural | 97.66 | |
| 3ctp_A | 330 | Periplasmic binding protein/LACI transcriptional; | 97.62 | |
| 3bil_A | 348 | Probable LACI-family transcriptional regulator; st | 97.61 | |
| 3e61_A | 277 | Putative transcriptional repressor of ribose OPER; | 97.58 | |
| 3h5o_A | 339 | Transcriptional regulator GNTR; transcription regu | 97.56 | |
| 2dri_A | 271 | D-ribose-binding protein; sugar transport; HET: RI | 97.5 | |
| 4fe7_A | 412 | Xylose operon regulatory protein; HTH_ARAC, helix- | 97.49 | |
| 3cs3_A | 277 | Sugar-binding transcriptional regulator, LACI FAM; | 97.49 | |
| 3hs3_A | 277 | Ribose operon repressor; PSI-II, NYSGXRC, periplas | 97.45 | |
| 1gud_A | 288 | ALBP, D-allose-binding periplasmic protein; peripl | 97.38 | |
| 3huu_A | 305 | Transcription regulator like protein; PSI-II, NYSG | 97.32 | |
| 3jvd_A | 333 | Transcriptional regulators; structural genomics, P | 97.29 | |
| 1byk_A | 255 | Protein (trehalose operon repressor); LACI family, | 97.28 | |
| 3uug_A | 330 | Multiple sugar-binding periplasmic receptor CHVE; | 97.26 | |
| 2fqx_A | 318 | Membrane lipoprotein TMPC; ABC transport system, l | 97.22 | |
| 1jye_A | 349 | Lactose operon repressor; gene regulation, protein | 97.18 | |
| 3miz_A | 301 | Putative transcriptional regulator protein, LACI f | 97.14 | |
| 2hqb_A | 296 | Transcriptional activator of COMK gene; berkeley s | 97.01 | |
| 3s99_A | 356 | Basic membrane lipoprotein; ssgcid, structural gen | 97.0 | |
| 3h5t_A | 366 | Transcriptional regulator, LACI family; DNA-depend | 96.72 | |
| 3qi7_A | 371 | Putative transcriptional regulator; periplasmic bi | 95.99 | |
| 3ixl_A | 240 | Amdase, arylmalonate decarboxylase; enantioselecti | 95.88 | |
| 2ozz_A | 231 | Hypothetical protein YHFZ; alpha-beta structure, s | 93.36 | |
| 2xed_A | 273 | Putative maleate isomerase; nicotinic acid catabol | 92.54 | |
| 2eq5_A | 228 | 228AA long hypothetical hydantoin racemase; struct | 88.96 | |
| 2fqx_A | 318 | Membrane lipoprotein TMPC; ABC transport system, l | 87.26 | |
| 3bfj_A | 387 | 1,3-propanediol oxidoreductase; opportunistic path | 86.7 | |
| 2dgd_A | 223 | 223AA long hypothetical arylmalonate decarboxylas; | 85.94 | |
| 3p7i_A | 321 | PHND, subunit of alkylphosphonate ABC transporter; | 85.51 | |
| 3s99_A | 356 | Basic membrane lipoprotein; ssgcid, structural gen | 85.37 | |
| 3n5l_A | 310 | Binding protein component of ABC phosphonate TRAN; | 84.95 | |
| 3ox4_A | 383 | Alcohol dehydrogenase 2; iron, NAD, oxidoreductase | 84.56 | |
| 2hqb_A | 296 | Transcriptional activator of COMK gene; berkeley s | 81.54 | |
| 1rrm_A | 386 | Lactaldehyde reductase; structural genomics, dehyd | 80.97 | |
| 1vlj_A | 407 | NADH-dependent butanol dehydrogenase; TM0820, stru | 80.85 |
| >3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-60 Score=524.19 Aligned_cols=459 Identities=18% Similarity=0.289 Sum_probs=384.7
Q ss_pred ceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
++|+||+++|++.. ..+.|+++|+++||+++ ++|+++++|+++ ++..+++.+|++++++|.|||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 47999999999864 78999999999999986 799999999998 8999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
+.+++++++.+++|+|++ +.+.. ..++|+||+.|+ ++.++++++++|||++|++|| |+++|....+.+.+.+
T Consensus 73 ~~a~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeec--ccCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 999999999999999997 33322 357899999998 889999999999999999999 7788999999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
++.|+||+....++........++..++++|+++++++|++++....+..++++|+++||..++|+||.++.+....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999998877643112367888999999999999999999999999999999999999999999999865433322
Q ss_pred CcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCCccc
Q 008904 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 337 (549)
........|++++..+.++.+.+++|.++|+++++.. ..++.+++++||||+++|+|++++..++.....
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 1223445678888888888999999999999887532 235677999999999999999999876543221
Q ss_pred cCCccccCCCCCccccCCc--cccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCC
Q 008904 338 SNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (549)
Q Consensus 338 ~~~~~~~~~~~~~~~c~~~--~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~ 415 (549)
...+..|... .+|.++..|.++|++++|+|++|++.||++|++....|+|++++++++ ++||.|++..
T Consensus 300 ---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~-~~vg~w~~~~ 369 (823)
T 3kg2_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVD 369 (823)
T ss_dssp ---------SSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCE-EEEEEEETTT
T ss_pred ---------CCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCC-eeEEEEcCCC
Confidence 1223467654 567789999999999999999999999999999889999999998888 8999999987
Q ss_pred CCcccCCcccccCCCCCCCCcccceeeEeCCCCcCCCccccccCCCCeEEEeecCcccccccEEe---ecCcceeeeeeH
Q 008904 416 GLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFK---VNGTDIVHGYCI 492 (549)
Q Consensus 416 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~G~~i 492 (549)
|+..... .. ....+++++|++...+||..+... ..++++++|||+
T Consensus 370 g~~~~~~------------------------------~~--~~~~~~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~~ 417 (823)
T 3kg2_A 370 KMVLTED------------------------------DT--SGLEQKTVVVTTILESPYVMMKANHAALAGNERYEGYCV 417 (823)
T ss_dssp EEEECCC------------------------------CC--SSCCCCCEEEEECCCTTTSEECTTGGGCCGGGGEESHHH
T ss_pred CceeccC------------------------------cc--cccCCCEEEEEEecCCCcEEEecCccccCCCCceEEEHH
Confidence 6543210 00 011368899998765555432110 136789999999
Q ss_pred HHHHHHHHhCCCCcCEEEEECCCCC------CCCChHHHHHhHhcCcccEEecceEEeeccc
Q 008904 493 DVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVSRILTKKVAQLTRVS 548 (549)
Q Consensus 493 dl~~~~~~~l~~~~~~~~~~~~dg~------~~g~~~gl~~~l~~~~~d~~~~~~ti~~~r~ 548 (549)
||++++++.|||+ |+++.++||+ .+|+|+||+++|.+|++|+++++++||++|+
T Consensus 418 dl~~~~a~~l~~~--~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~ 477 (823)
T 3kg2_A 418 DLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVRE 477 (823)
T ss_dssp HHHHHHHHHHTCC--EEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHH
T ss_pred HHHHHHHHHcCCc--EEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhhe
Confidence 9999999999999 9999999876 4688999999999999999999999999996
|
| >3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=428.60 Aligned_cols=369 Identities=17% Similarity=0.256 Sum_probs=315.9
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCC-CCCceEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRV-LGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~i-l~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
.+++|+||+++|++.. ..+.|+++|+++||+++++ |+|++|+++++|+++ ++..+++.+|++++++|.+||||.+
T Consensus 2 ~~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~ 78 (389)
T 3o21_A 2 FPNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYD 78 (389)
T ss_dssp CCSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCC
T ss_pred CCceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCC
Confidence 4689999999999864 7899999999999999999 699999999999987 9999999999999999999999999
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
|..+.+++++++.++||+|+++. +.++ ..+|.||+.|+ ++.++++++++|+|++|++|| |++||...++.|.
T Consensus 79 S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~ 150 (389)
T 3o21_A 79 QMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred hhHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHH
Confidence 99999999999999999998743 4332 34567788886 899999999999999999999 7799999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|+||+..+.++.. ...++..+|.+|+++++++||+++....+..++++++++||..++|+||+++.+....
T Consensus 151 ~~~~~~g~~v~~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~ 227 (389)
T 3o21_A 151 EAAVQNNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDI 227 (389)
T ss_dssp HHHHHTTCEEEEEECTTCC---CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGC
T ss_pred HHhhcCCCeEEEEEecCCC---CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccc
Confidence 9999999999988766532 3458999999999999999999999999999999999999999999999988665443
Q ss_pred CCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
+. ........|++++....++.|.+++|.++|+++++.. ..+..+++++||||+++|+|++++..++..
T Consensus 228 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~ 302 (389)
T 3o21_A 228 LL-----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVD 302 (389)
T ss_dssp CC-----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cH-----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 32 2334456788888888888999999999999887532 134678999999999999999999865433
Q ss_pred ccccCCccccCCCCCcccc--CCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEee
Q 008904 335 ISFSNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c--~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~ 412 (549)
... .+...+| ....+|.+|..|.++|++++|+|++|+|.||++|+|....|+|+++.++++ ++||.|+
T Consensus 303 ~~~---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~ 372 (389)
T 3o21_A 303 VSR---------RGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGS-RKAGYWN 372 (389)
T ss_dssp CC--------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE-EEEEEEE
T ss_pred ccc---------CCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCc-eeeeEEc
Confidence 211 0123456 334678889999999999999999999999999999888999999998887 9999999
Q ss_pred CCCCCccc
Q 008904 413 NYSGLSVV 420 (549)
Q Consensus 413 ~~~~l~~~ 420 (549)
+..||+..
T Consensus 373 ~~~g~~~~ 380 (389)
T 3o21_A 373 EYERFVPF 380 (389)
T ss_dssp TTTEEECC
T ss_pred CCCCcccc
Confidence 99987643
|
| >4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=418.85 Aligned_cols=371 Identities=16% Similarity=0.224 Sum_probs=314.2
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCC-CCceEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVL-GGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il-~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
.|+.|+||++||.+. ...+.|+++|+++||+++++| ++.+|.+...+++ +++..+.+.+|++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 578999999999874 577899999999999999998 5677777776654 58889999999999999999999999
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
|..+.+++++++.++||+|+++++.+.. .+|+ +++.|. +++++++++++|+|++|++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~--~~~~~~---~~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFV--LQLRPS---LRGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSE--EECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCC--ccccCC---HHHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999976544322 2445 444454 357999999999999999999777654 5678888
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+.+.|++|.....++. ...++...|++++++++++||+.+....+..++++|+++||..++++|++++.+....
T Consensus 151 ~~~~~~g~~v~~~~~~~~----~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 226 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVENF----NDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDI 226 (389)
T ss_dssp HHHHTTTCEEEEEECTTC----CHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGS
T ss_pred HHHHhcCceEEEEeecCC----cchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccch
Confidence 899999999998877664 4789999999999999999999999999999999999999999999999998876654
Q ss_pred CCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCC-----CCCCCchhhhHhHHHHHHHHHHHHHHhcCCCc
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG-----SIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 335 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~ 335 (549)
.. ........++.++....+..+.+++|.++|++.+.. ...+..+++++||||+++|+||+++.++....
T Consensus 227 ~~-----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~ 301 (389)
T 4gpa_A 227 SL-----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDI 301 (389)
T ss_dssp CC-----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hh-----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 43 455667788999999999999999999999987642 24577889999999999999999998876543
Q ss_pred cccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCC
Q 008904 336 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (549)
Q Consensus 336 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~ 415 (549)
... .......|....+|.+|..|.++|++++|+|+||+|.||++|+|.++.|+|+|++++++ ++||.|++..
T Consensus 302 ~~~-------~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~-~~VG~W~~~~ 373 (389)
T 4gpa_A 302 SRR-------GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGP-RKVGYWNDMD 373 (389)
T ss_dssp CCT-------TCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEE-EEEEEEETTT
T ss_pred ccc-------CCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEE-EEEEEEECCC
Confidence 211 12233456667789889999999999999999999999999999889999999998887 9999999999
Q ss_pred CCcccC
Q 008904 416 GLSVVP 421 (549)
Q Consensus 416 ~l~~~~ 421 (549)
||.+..
T Consensus 374 gl~~~~ 379 (389)
T 4gpa_A 374 KLVLIQ 379 (389)
T ss_dssp EEEECC
T ss_pred CeEECC
Confidence 887653
|
| >3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-53 Score=431.54 Aligned_cols=367 Identities=20% Similarity=0.313 Sum_probs=308.9
Q ss_pred CCCceEEEEEEeccC------------C-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFG------------T-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~------------~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~ 88 (549)
..+|+|.||++||++ . ..|.+...|+++|+|+||+++++|||++|+++++|+|+++..+++.+.+++
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 578999999999996 1 157788999999999999999999999999999999999999999999998
Q ss_pred hc-------------------------CcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCC
Q 008904 89 ET-------------------------DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPN 142 (549)
Q Consensus 89 ~~-------------------------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps 142 (549)
++ +|+|||||.+|..+.+++++++.+++|+|+++++++.+++ .+|||+||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 5999999999999999999999999999999999999998 479999999999
Q ss_pred cHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHH-HHHhcCCCeE
Q 008904 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL-VKVRMMEARV 221 (549)
Q Consensus 143 ~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~v 221 (549)
+..++.++++++++|||+||++|++|++||+...+.|++.+++.|+||++.+.++.. ....++...+ +.++++++++
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~~i~~s~a~v 246 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 246 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC----CHHHHHHHHHHHHTCTTCCE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCC--CChHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999999999999999999999999999999999888754 3467888888 6788899999
Q ss_pred EEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHH------
Q 008904 222 IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVS------ 295 (549)
Q Consensus 222 iil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~------ 295 (549)
||+++....+..+++++.++|+. ++||+++.|........ .....+.|++++.++..+.|.+++|+.
T Consensus 247 Ii~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 319 (479)
T 3sm9_A 247 VVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK----GSEHVAYGAITLELASQPVRQFDRYFQSLNPYN 319 (479)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT----TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc----cccccCceEEEEEeccCCCcchhhHhhccCcCc
Confidence 99999999999999999999975 89999998764311100 112467899999999999999988864
Q ss_pred ---------HHHhhcCCCC---------------------CCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccC
Q 008904 296 ---------RWNTLSNGSI---------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 345 (549)
Q Consensus 296 ---------~~~~~~~~~~---------------------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~ 345 (549)
.|+..|+|.. ........+||||+++|+|||+++.+.+..
T Consensus 320 ~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---------- 389 (479)
T 3sm9_A 320 NHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPN---------- 389 (479)
T ss_dssp CTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCC----------
Confidence 4666665321 011234679999999999999998632210
Q ss_pred CCCCccccCCccccCchHHHH-HHHHhcccccc------ce-eeEEccCCCCCCCceEEEEEee---CceeeEEeEee
Q 008904 346 LGGGTLNLGALSIFDGGKKFL-ANILQTNMTGL------SG-PIHFNQDRSLLHPSYDIINVIE---HGYPQQIGYWS 412 (549)
Q Consensus 346 ~~~~~~~c~~~~~~~~~~~l~-~~l~~~~f~g~------tG-~v~fd~~g~r~~~~~~I~~~~~---~~~~~~VG~w~ 412 (549)
....|.....+ ++++|+ ++|++++|.+. +| .|.||++|++ ...|+|+|++. ...+++||.|+
T Consensus 390 ---~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 390 ---TTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp ---CSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred ---CCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 11245433334 388999 99999999998 55 6999999996 68999999973 33569999997
|
| >3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-52 Score=429.99 Aligned_cols=391 Identities=20% Similarity=0.315 Sum_probs=315.5
Q ss_pred CCCceEEEEEEeccCCC-----------------CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFGTV-----------------NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGA 84 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~-----------------~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~ 84 (549)
..+|+|.||++||.+.. .|.+...|+.+|+||||+++++|||++|+++++|+|+++..+++.+
T Consensus 13 ~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a 92 (496)
T 3ks9_A 13 RMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQS 92 (496)
T ss_dssp EECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHH
T ss_pred ecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHH
Confidence 68999999999998731 2467789999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------------hcCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCC
Q 008904 85 LQFM-----------------------------ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYP 134 (549)
Q Consensus 85 ~~l~-----------------------------~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~ 134 (549)
.+++ +++|.|||||.+|..+.+++++++.+++|+|+++++++.+++ .+||
T Consensus 93 ~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p 172 (496)
T 3ks9_A 93 IEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 172 (496)
T ss_dssp HHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCT
T ss_pred HHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCC
Confidence 9987 348999999999999999999999999999999999999998 4799
Q ss_pred ceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH
Q 008904 135 FFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 214 (549)
Q Consensus 135 ~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l 214 (549)
|+||+.|++..++.++++++++|||+||++|++|++||+...+.|++++++.|+||++.+.++.. ....++..++++|
T Consensus 173 ~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~i 250 (496)
T 3ks9_A 173 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSN--AGEKSFDRLLRKL 250 (496)
T ss_dssp TEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCHHHHHHHHHHH
T ss_pred ceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCC--CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887654 4578899999999
Q ss_pred hcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHH
Q 008904 215 RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRD 292 (549)
Q Consensus 215 ~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 292 (549)
+++ ++++|++++....+..++++++++|+.. .+.||+++.|....... ......+.|++++.++.++.+.+++
T Consensus 251 ~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~ 325 (496)
T 3ks9_A 251 RERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDD 325 (496)
T ss_dssp HTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred HhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHh
Confidence 984 8899999999999999999999999863 46899998775431110 0123568899999999999999998
Q ss_pred HHH---------------HHHhhcCCCCC------------------------CCchhhhHhHHHHHHHHHHHHHHhcCC
Q 008904 293 FVS---------------RWNTLSNGSIG------------------------LNPYGLYAYDTVWMIARALKLFLDQGN 333 (549)
Q Consensus 293 f~~---------------~~~~~~~~~~~------------------------~~~~~~~~yDav~~~a~Al~~~~~~~~ 333 (549)
|++ .|+..|+|... .......+|+|||++|+|||+++.+.+
T Consensus 326 fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~ 405 (496)
T 3ks9_A 326 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 405 (496)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 864 37766654210 011234699999999999999986432
Q ss_pred CccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCCCCCceEEEEEee----CceeeEE
Q 008904 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE----HGYPQQI 408 (549)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r~~~~~~I~~~~~----~~~~~~V 408 (549)
.. ....|....++. +++|+++|++++|.+.+| .|.||++|+. ...|+|+|++. ...+++|
T Consensus 406 ~~-------------~~~~c~~~~~~~-~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~V 470 (496)
T 3ks9_A 406 PG-------------HVGLCDAMKPID-GSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHV 470 (496)
T ss_dssp TT-------------CSSCCGGGSSCC-HHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEE
T ss_pred CC-------------CCCCCcCCCCCC-HHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEE
Confidence 11 123465544564 899999999999999999 5999999996 68999999972 3456999
Q ss_pred eEeeCCCCCcccCCcccccCCCCCCCCcccceeeEeCCCCcCCCcc
Q 008904 409 GYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRG 454 (549)
Q Consensus 409 G~w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~ 454 (549)
|.|+.. .|.++ .+.| |.++..++|.+
T Consensus 471 G~~~~~-~l~i~------------------~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 471 GTWHEG-VLNID------------------DYKI-QMNKSGLVPRG 496 (496)
T ss_dssp EEEETT-EEEEC------------------TTTC------------
T ss_pred EEEeCC-eEEEe------------------hhhc-ccCCCCCCCCC
Confidence 999842 34432 2356 76666666653
|
| >2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-52 Score=433.67 Aligned_cols=390 Identities=21% Similarity=0.313 Sum_probs=322.6
Q ss_pred CCCceEEEEEEeccCC-------------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~ 88 (549)
..+++|+||++||++. ..|.....|+++|+++||+++++|||++|+++++|+++++..+++.+.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 4678999999999973 357788899999999999999999999999999999999999999999887
Q ss_pred h-------------------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCC
Q 008904 89 E-------------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPN 142 (549)
Q Consensus 89 ~-------------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps 142 (549)
+ ++|.+||||.+|..+.+++.+++.+++|+|+++++++.|++ .+|||+||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 3 48999999999999999999999999999999999999998 479999999999
Q ss_pred cHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeE
Q 008904 143 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARV 221 (549)
Q Consensus 143 ~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~v 221 (549)
+..++.++++++++|||+||++|++|++||....+.|++.+++.|+||++.+.++.. ....++...+.++++ +++++
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~~s~a~v 247 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 247 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCC--CChHHHHHHHHHHhccCCCCE
Confidence 999999999999999999999999999999999999999999999999998888753 347789999999964 79999
Q ss_pred EEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHH-------
Q 008904 222 IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFV------- 294 (549)
Q Consensus 222 iil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~------- 294 (549)
||+++....+..+++++.++|+ +++||+++.|....... ......+.|++++.++..+.+.+++|+
T Consensus 248 Ii~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~ 320 (555)
T 2e4u_A 248 VVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYN 320 (555)
T ss_dssp EEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCccc
Confidence 9999999999999999999886 68999998775432211 112356789999988776666665543
Q ss_pred --------HHHHhhcCCCC---------------------CCCchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccC
Q 008904 295 --------SRWNTLSNGSI---------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 345 (549)
Q Consensus 295 --------~~~~~~~~~~~---------------------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~ 345 (549)
+.|+..|++.. .+..+++.+||||+++|+|||++..+....
T Consensus 321 ~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~---------- 390 (555)
T 2e4u_A 321 NHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ---------- 390 (555)
T ss_dssp CTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC----------
Confidence 45777776421 134567889999999999999997532110
Q ss_pred CCCCccccCCccccCchHHHHH-HHHhcccc------cccee-eEEccCCCCCCCceEEEEEe---eCceeeEEeEeeCC
Q 008904 346 LGGGTLNLGALSIFDGGKKFLA-NILQTNMT------GLSGP-IHFNQDRSLLHPSYDIINVI---EHGYPQQIGYWSNY 414 (549)
Q Consensus 346 ~~~~~~~c~~~~~~~~~~~l~~-~l~~~~f~------g~tG~-v~fd~~g~r~~~~~~I~~~~---~~~~~~~VG~w~~~ 414 (549)
....|...... ++++|++ +|++++|. |.+|. |.||++|++ ...|+|++++ +...+++||.|++
T Consensus 391 ---~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~- 464 (555)
T 2e4u_A 391 ---TTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE- 464 (555)
T ss_dssp ---CSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS-
T ss_pred ---CCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc-
Confidence 01124332223 4889999 99999999 99997 999999997 5889999996 2224699999984
Q ss_pred CCCcccCCcccccCCCCCCCCcccceeeEeCCCCcCCCccccc
Q 008904 415 SGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVF 457 (549)
Q Consensus 415 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~ 457 (549)
.|.+ +.+.|.|++ .++|.|+|.
T Consensus 465 -~l~i------------------~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 465 -TLSL------------------DVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp -SEEC------------------CGGGCCCTT--SSCCCCCSS
T ss_pred -eEEE------------------eccccccCC--CCCcceeeC
Confidence 3433 235789987 678999983
|
| >3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=414.83 Aligned_cols=369 Identities=19% Similarity=0.274 Sum_probs=306.3
Q ss_pred CceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCCh-HHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNG-FLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~-~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
.++|+||+++|+++..|...+.|+++|+++||+++++|+|++|+++++|+++++ ..+...+|++++++|.+||||.+|.
T Consensus 2 ~~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~ 81 (393)
T 3om0_A 2 LSSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSP 81 (393)
T ss_dssp CCEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCH
T ss_pred CcceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCch
Confidence 357999999999998999999999999999999999999999999999999976 4667889999988999999999995
Q ss_pred H-HHHHHHhhhhcCCcEEecccCCCCCCC-CCCCce--EEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHH
Q 008904 103 M-AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFF--VQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 103 ~-~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~--~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~ 178 (549)
. +.+++++++.+++|+|++++++ ++ ..||++ ||+.|++..++.++++++++++|++|++||++++||....+.
T Consensus 82 ~~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~ 158 (393)
T 3om0_A 82 ASASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEEL 158 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHH
T ss_pred hHHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHH
Confidence 5 5799999999999999997664 33 468888 999999999999999999999999999999999988765444
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccc
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (549)
+ +.+.+.|++|.... ++ . ..++..++.+|+++++++|++++....+..++++++++||..+.|+||++++...
T Consensus 159 ~-~~~~~~g~~v~~~~-~~-~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 231 (393)
T 3om0_A 159 V-RGFLISKETLSVRM-LD-D----SRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFP 231 (393)
T ss_dssp H-HHHHHSSSCEEEEE-CC------CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGG
T ss_pred H-HhhhccCCeEEEEe-cC-C----CCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEeccccc
Confidence 4 55677899987654 33 2 4578899999999999999999999999999999999999988999999987554
Q ss_pred ccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcC
Q 008904 259 FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQG 332 (549)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~ 332 (549)
..+.. .......|++++....+..+.+++|.++|+++++.. ..+..+++++||||+++++|++++.+..
T Consensus 232 ~~~l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~ 306 (393)
T 3om0_A 232 ILHLD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQ 306 (393)
T ss_dssp GCCCT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ccchh-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhcc
Confidence 43321 122345678888888888888999999888877621 2466789999999999999999985432
Q ss_pred CCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEee
Q 008904 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (549)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~ 412 (549)
.. ......|....+|.++..|.++|++++|+|++|+++||++|++....|+|++++++++ ++||.|+
T Consensus 307 ~~------------~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~ 373 (393)
T 3om0_A 307 EI------------GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGH-REIGVWY 373 (393)
T ss_dssp CC------------CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEE-EEEEEEE
T ss_pred cC------------cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCc-eEeeeEc
Confidence 11 1234568877788889999999999999999999999999999889999999998776 9999999
Q ss_pred CCCCCccc
Q 008904 413 NYSGLSVV 420 (549)
Q Consensus 413 ~~~~l~~~ 420 (549)
+..||+++
T Consensus 374 ~~~gl~~~ 381 (393)
T 3om0_A 374 SNRTLAMN 381 (393)
T ss_dssp CC------
T ss_pred CCCCcccc
Confidence 99888664
|
| >3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=411.93 Aligned_cols=369 Identities=21% Similarity=0.328 Sum_probs=317.0
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
+++|+||+++|++ ...|...+.|+++|+++||+++++|+|++|++++.|.. .|+..+...+|++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 5789999999996 35678899999999999999999999999999998876 588899999999999999999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~ 181 (549)
..+.+++++++.+++|+|+++++++.+++. .+|+||+.|++..++.++++++++++|++|++|+ +++||....+.+.+
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 999999999999999999999998888763 5789999999999999999999999999999998 66799999999999
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (549)
.+++.|++|.... ++.. ..++..++++|+++++++|++++...++..++++++++||..+.|+||+++......+
T Consensus 160 ~~~~~g~~v~~~~-~~~~----~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~ 234 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LPAD----TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234 (395)
T ss_dssp GGGTSSCEEEEEE-CCSS----GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBC
T ss_pred hhhcCCceEEEEE-eCCC----chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEec
Confidence 9999999998875 7644 7789999999999999999999999999999999999999999999999875443222
Q ss_pred CCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCC----------CCCchhhhHhHHHHHHHHHHHHHHhc
Q 008904 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSI----------GLNPYGLYAYDTVWMIARALKLFLDQ 331 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~~~~~~~~yDav~~~a~Al~~~~~~ 331 (549)
... ......++.++....+..+..++|.++|++++.... .++.+++.+|||++++++|++++...
T Consensus 235 ~~~-----~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~ 309 (395)
T 3h6g_A 235 VEP-----YRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM 309 (395)
T ss_dssp CTT-----TTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hHH-----hccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcC
Confidence 211 111122357777777888999999999987653211 14568999999999999999986332
Q ss_pred CCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEcc-CCCCCCCceEEEEEeeCceeeEEeE
Q 008904 332 GNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQ-DRSLLHPSYDIINVIEHGYPQQIGY 410 (549)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~-~g~r~~~~~~I~~~~~~~~~~~VG~ 410 (549)
....+.|.....|.++..|.++|++++|+|++|+++||+ +|+|....|+|++++++++ ++||.
T Consensus 310 ---------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~-~~vG~ 373 (395)
T 3h6g_A 310 ---------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL-EKIGT 373 (395)
T ss_dssp ---------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEE-EEEEE
T ss_pred ---------------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCc-eEEEE
Confidence 123457887778888999999999999999999999999 9999888999999998887 99999
Q ss_pred eeCCCCCccc
Q 008904 411 WSNYSGLSVV 420 (549)
Q Consensus 411 w~~~~~l~~~ 420 (549)
|++..|+++.
T Consensus 374 w~~~~g~~~~ 383 (395)
T 3h6g_A 374 WDPASGLNMT 383 (395)
T ss_dssp EETTTEECCC
T ss_pred EcCCCCcccc
Confidence 9999888664
|
| >4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-51 Score=415.80 Aligned_cols=385 Identities=18% Similarity=0.282 Sum_probs=320.7
Q ss_pred CCCceEEEEEEeccCC-----CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc--CcEE
Q 008904 22 LKPEVLNVGAIFSFGT-----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLA 94 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-----~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~--~v~a 94 (549)
...++|+||+++|++. ..|.....|+++|+++||++ ++++|++|+++++|+++++..+++.+++++.+ +|.+
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 10 PSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp -CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 5678999999999985 34678899999999999999 78889999999999999999999999999974 8999
Q ss_pred EEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCccc
Q 008904 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGR 173 (549)
Q Consensus 95 iiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~ 173 (549)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++++|++|++|+++++||.
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 999999999999999999999999999999999988 4799999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
...+.|.+.+++.|+||+....++. ++..++.+|+++++++|++++...++..++++++++|+...+|+||.+
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~~-------d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 241 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFSN-------DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIP 241 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEESS-------CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEE
T ss_pred HHHHHHHHHHHHcCceEEEEeccCc-------CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEc
Confidence 9999999999999999999887762 467889999999999999999999999999999999999888999999
Q ss_pred CCcccccCC--------CCcCChhhHhhccceEEEeEecCCC--------hhHHHHHHHHHhh-cCCCCCCCchhhhHhH
Q 008904 254 TWLSTFIDS--------KSPLSLKTAKSILGALTLRQHTPDS--------KRRRDFVSRWNTL-SNGSIGLNPYGLYAYD 316 (549)
Q Consensus 254 ~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~yD 316 (549)
+.....+.. ...........+.|++++.++.+.. +..++|.++|+++ ++ ..++.+++++||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~--~~~~~~a~~~YD 319 (433)
T 4f11_A 242 GWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG--VGPSKFHGYAYD 319 (433)
T ss_dssp SCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT--SCCCTTHHHHHH
T ss_pred CcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC--CCcccchhhHHH
Confidence 883332210 0111134457889999998865432 3378899999887 44 567788899999
Q ss_pred HHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccC--CccccCchHHHHHHHHhccccccceeeEEccCCCCCCCce
Q 008904 317 TVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLG--ALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSY 394 (549)
Q Consensus 317 av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~ 394 (549)
||+++|+|++++..+..... ....|. ....|.++..|.++|++++|+|++|+|+| ++|+|. ..|
T Consensus 320 Av~~la~Al~~a~~~~~~~~------------~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~ 385 (433)
T 4f11_A 320 GIWVIAKTLQRAMETLHASS------------RHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTI 385 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHSS------------SCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEE
T ss_pred HHHHHHHHHHHHHHHHhccC------------CCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeE
Confidence 99999999999876421100 000111 11234468999999999999999999999 899985 899
Q ss_pred EEEEEeeCceeeEEeEeeCCCC-CcccCCcccccCCCCCCCCcccceeeEeCCCCc
Q 008904 395 DIINVIEHGYPQQIGYWSNYSG-LSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVT 449 (549)
Q Consensus 395 ~I~~~~~~~~~~~VG~w~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~ 449 (549)
+|++++++.+ ++||.|++... |.+ +.+.|.||++.+
T Consensus 386 ~I~~~~~g~~-~~VG~~~~~~~~l~~------------------~~~~i~W~~~~~ 422 (433)
T 4f11_A 386 KFTQFQDSRE-VKVGEYNAVADTLEI------------------INDTIRFQGSEP 422 (433)
T ss_dssp EEEEEETTEE-EEEEEEETTTTEEEE------------------CTTTCCCSSSSC
T ss_pred EEEEEECCce-EEEEEEECCCCeEEE------------------eCCceECCCCCC
Confidence 9999987555 99999986531 222 224789998773
|
| >3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-51 Score=406.72 Aligned_cols=364 Identities=20% Similarity=0.313 Sum_probs=291.3
Q ss_pred ceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 25 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 25 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~-~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
.+|+||++||++. ...+.|+++|+++||++ |++|++++.|++ +++..+++.+|++++++|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 3699999999975 46799999999999998 689999999965 59999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
+.+++++++.+++|+|++++ +. ...++|+||+.|+ ++.++++++++|+|++|++|| |++||....+.|.+.+
T Consensus 73 ~~av~~~~~~~~ip~is~~~--~~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSF--PT--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSC--CC--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCC--CC--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 99999999999999999865 22 2346789999886 899999999999999999999 7899999999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 263 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 263 (549)
++.|++|+....++........++..+|.+|+++++++|++++....+..++++++++||..++|+||++++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-
Confidence 9999999987655422001357899999999999999999999999999999999999999889999999754332221
Q ss_pred CcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCCccc
Q 008904 264 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (549)
Q Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 337 (549)
........+++++....+..|.+++|.++|+++++.. ..+..+++++||||+++++|++++.+++.....
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 224 ----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp ----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred ----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1112233457788877888899999999999887632 147788999999999999999999875433211
Q ss_pred cCCccccCCCCCcccc--CCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCCC
Q 008904 338 SNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 415 (549)
Q Consensus 338 ~~~~~~~~~~~~~~~c--~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~~ 415 (549)
.+....| ....+|.+|..|.++|++++|+|++|+|+||++|+|....|+|+++.++++ ++||.|++..
T Consensus 300 ---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~~~~ 369 (376)
T 3hsy_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVD 369 (376)
T ss_dssp ---------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEE-EEEEEEETTT
T ss_pred ---------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCc-eEEEEEcCCC
Confidence 1223467 555678889999999999999999999999999999889999999998887 9999999998
Q ss_pred CCcc
Q 008904 416 GLSV 419 (549)
Q Consensus 416 ~l~~ 419 (549)
||..
T Consensus 370 g~~~ 373 (376)
T 3hsy_A 370 KMVV 373 (376)
T ss_dssp EEEE
T ss_pred Ccee
Confidence 8754
|
| >3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-52 Score=429.89 Aligned_cols=369 Identities=20% Similarity=0.343 Sum_probs=282.9
Q ss_pred CCCceEEEEEEeccCC-------------CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 88 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~ 88 (549)
..+++|+||++||++. ..|.+...|+++|+|+||+++++|||++|+++++|+|+++..+++.+.+++
T Consensus 12 ~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll 91 (481)
T 3mq4_A 12 RIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFV 91 (481)
T ss_dssp EECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGG
T ss_pred ccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHH
Confidence 6789999999999973 257788999999999999999999999999999999999999999999988
Q ss_pred h-----------------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcH
Q 008904 89 E-----------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDL 144 (549)
Q Consensus 89 ~-----------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~ 144 (549)
+ ++|.|||||.+|..+.+++++++.+++|+|+++++++.+++ .+|||+||+.|++.
T Consensus 92 ~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 92 QALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTH
T ss_pred hCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchH
Confidence 6 46999999999999999999999999999999999999998 58999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhh-cCeEEEEEEccCCCCCCChh--hHHHHHHHHh-cCCCe
Q 008904 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTET--DVRNELVKVR-MMEAR 220 (549)
Q Consensus 145 ~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~-~g~~v~~~~~~~~~~~~~~~--~~~~~l~~l~-~~~~~ 220 (549)
.++.++++++++|||+||++|++|++||+...+.|.+.+++ .|+||++.+.++.. .... ++...+.+++ +++++
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~--~~~~~~d~~~~l~~i~~~s~a~ 249 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQE--RKDRTIDFDRIIKQLLDTPNSR 249 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC--------CCSHHHHCCCCC----
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCC--CccchHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999998875 79999988887754 2223 6778889988 58999
Q ss_pred EEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHH-----
Q 008904 221 VIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVS----- 295 (549)
Q Consensus 221 viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~----- 295 (549)
+||+++....+..++++++++|+.. .++||+++.|....... ......+.|.+++.++..+.|.+++|++
T Consensus 250 vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~ 324 (481)
T 3mq4_A 250 AVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLE 324 (481)
T ss_dssp CEEECCCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred EEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcC
Confidence 9999999999999999999999863 48999999886532221 1223568999999999999999998864
Q ss_pred ----------HHHhhcCCCCC--------------------------CCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 296 ----------RWNTLSNGSIG--------------------------LNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 296 ----------~~~~~~~~~~~--------------------------~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.|+..|+|... .......+||||+++|+|||+++.+.+..
T Consensus 325 ~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---- 400 (481)
T 3mq4_A 325 NNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD---- 400 (481)
T ss_dssp TCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred cCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC----
Confidence 36666553210 01334569999999999999998642211
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCCCCCceEEEEEee----CceeeEEeEee
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE----HGYPQQIGYWS 412 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r~~~~~~I~~~~~----~~~~~~VG~w~ 412 (549)
....|.....+. +++|+++|++++|.+.+| .|.||++|++ ...|+|+|++. ...+++||.|+
T Consensus 401 ---------~~~~c~~~~~~~-~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 ---------YRGVCPEMEQAG-GKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ------------CCHHHHTSC-HHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred ---------CCCCCCCCCCcC-HHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 112454433453 889999999999999999 6999999996 68999999972 22458999998
|
| >1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-50 Score=409.03 Aligned_cols=363 Identities=16% Similarity=0.238 Sum_probs=298.8
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCC----CCCCceEEEEEecCCCChHHHHHHHHHHH----hcC
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPR----VLGGRKLSITMHDAKFNGFLSIMGALQFM----ETD 91 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~----il~g~~l~~~~~d~~~~~~~a~~~~~~l~----~~~ 91 (549)
..++|+||+++|++.. .|.....|+++|+++||++++ +|||++|+++++|+++++. +++.+.+++ +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 4578999999999743 345678999999999999998 8899999999999999987 766665554 338
Q ss_pred cEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCC--CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC
Q 008904 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPL--QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 169 (549)
Q Consensus 92 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~--~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~ 169 (549)
|.+||||.+|..+.+++++++.+++|+|+++++++.++++ .|||+||+.|++..++.++++++++|+|+||++|++|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999884 79999999999999999999999999999999999999
Q ss_pred Ccccc---hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 170 DQGRN---GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 170 ~~g~~---~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
+||+. ..+.|.+.+++.|+||+....++.. ..++...+++|+ +++++|++++....+..++++++++||..+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecCCc----ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 99999 8999999999999999987766533 446889999999 899999999999999999999999999888
Q ss_pred CeEEEEeCCccc------ccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhh-----cCCCCCCCchhhhHh
Q 008904 247 GYVWIATTWLST------FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL-----SNGSIGLNPYGLYAY 315 (549)
Q Consensus 247 ~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~~~~~~~y 315 (549)
.|+||.+++... .+...............++.++..+.+..|.+++|.++|+.+ |+....+..+++.+|
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFH 319 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHH
T ss_pred CEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHH
Confidence 899999883221 111111000111134556667777777889999999999876 432123456788999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceE
Q 008904 316 DTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYD 395 (549)
Q Consensus 316 Dav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~ 395 (549)
|||+++|+|++++..++.. +.++++|+++|++++|+|++|+|.||++|++. ..|+
T Consensus 320 dAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~ 374 (441)
T 1jdp_A 320 DAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFS 374 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEE
T ss_pred HHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEE
Confidence 9999999999998754311 12488999999999999999999999999974 8999
Q ss_pred EEEEee--CceeeEEeEeeCCCC
Q 008904 396 IINVIE--HGYPQQIGYWSNYSG 416 (549)
Q Consensus 396 I~~~~~--~~~~~~VG~w~~~~~ 416 (549)
|++++. ++.+++||.|++..+
T Consensus 375 I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 375 VIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEETTTTEEEEEEEEETTTT
T ss_pred EEecccCCCCceEEEEEEcCCCC
Confidence 999973 455699999998653
|
| >1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=405.66 Aligned_cols=360 Identities=15% Similarity=0.199 Sum_probs=300.4
Q ss_pred ceEEEEEEeccCC---CCchHHHH-HHHHHHHHHHcCCCCCCCceEEEEEecC-----CCChHHHHHHHHHHHh-cCcEE
Q 008904 25 EVLNVGAIFSFGT---VNGQVSRI-AMKAAQDDINSDPRVLGGRKLSITMHDA-----KFNGFLSIMGALQFME-TDTLA 94 (549)
Q Consensus 25 ~~i~IG~l~~~~~---~~g~~~~~-a~~~Av~~iN~~~~il~g~~l~~~~~d~-----~~~~~~a~~~~~~l~~-~~v~a 94 (549)
++|+||+++|++. ..|..... |+++|+++||+++++|||++|+++++|+ +|++..++..+++++. ++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 5799999999973 45666777 9999999999999999999999999999 4556688888888775 59999
Q ss_pred EEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEE------Ee
Q 008904 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAI------FN 167 (549)
Q Consensus 95 iiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii------~~ 167 (549)
||||.+|..+.+++++++.+++|+|+++++++.++++ .|||+||+.|++..++.++++++++|+|+||++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 9999999999999999999999999999999999884 6999999999999999999999999999999999 66
Q ss_pred cCCcccchHHHHHHHHhh-cCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 168 DDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 168 ~~~~g~~~~~~l~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
++++| ..++.+.+.+.+ .|+||+....++. ...++..++++|++ ++++|++++....+..++++++++|+...
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~----~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 234 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVEG----DPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGE 234 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECTT----CGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTT
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEecC----chhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCC
Confidence 77778 566778888888 9999998776543 36789999999998 89999999999999999999999999877
Q ss_pred CeEEEEeCCcccccC---------CC---CcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcC----CCC---CC
Q 008904 247 GYVWIATTWLSTFID---------SK---SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSN----GSI---GL 307 (549)
Q Consensus 247 ~~~~i~~~~~~~~~~---------~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~---~~ 307 (549)
+++||.++.+..... .. ........++..|++.+.+..+..+.+++|.++|++.++ +.. .+
T Consensus 235 ~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (435)
T 1dp4_A 235 DYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (435)
T ss_dssp TCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred CEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchh
Confidence 799999987654321 00 000123345688988888877778889999998876653 111 25
Q ss_pred CchhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCC
Q 008904 308 NPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDR 387 (549)
Q Consensus 308 ~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g 387 (549)
..+++++||||+++|+|++++..++.. +.++++|+++|++++|+|++|++.||++|
T Consensus 315 ~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g 370 (435)
T 1dp4_A 315 NIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNG 370 (435)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCC
Confidence 567889999999999999998764321 11488999999999999999999999999
Q ss_pred CCCCCceEEEEEe-eCceeeEEeEeeCCC
Q 008904 388 SLLHPSYDIINVI-EHGYPQQIGYWSNYS 415 (549)
Q Consensus 388 ~r~~~~~~I~~~~-~~~~~~~VG~w~~~~ 415 (549)
++. ..|+|++++ .++.+++||.|++..
T Consensus 371 ~~~-~~~~i~~~~~~~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 371 DRD-TDFSLWDMDPETGAFRVVLNYNGTS 398 (435)
T ss_dssp BBC-CCEEEEEECTTTCCEEEEEEECTTT
T ss_pred Ccc-ceeEEEEecCCCCcEEEEEEecCCC
Confidence 985 799999994 234459999998765
|
| >3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=397.51 Aligned_cols=363 Identities=19% Similarity=0.259 Sum_probs=311.0
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
..+++|+||+++|++.. ..+.|+++|+++||+++ +|++++.|+++ ++..+++++|++++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 46789999999999864 78999999999999975 99999999886 9999999999999999999999999
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
|..+.+++++++.+++|+|+++ ++.++ ..+|.||+.|+ ++.++++++++++|++|++|| +++||....+.+.
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 44443 45678888887 899999999999999999999 6689999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|+||+....++. ...++..+|.+|+++++++|++++....+..++++++++||...+|+||+++.+....
T Consensus 149 ~~~~~~g~~v~~~~~~~~----~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~ 224 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILTT----TEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDI 224 (384)
T ss_dssp HHHHHHTCEEEEEEGGGC----CHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGS
T ss_pred HHhhhcCceEEEEEeccC----CchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccc
Confidence 999999999998875543 3778999999999999999999999999999999999999998899999998654332
Q ss_pred CCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCC------CCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
+. ........|++++.+..+..+.+++|.++|+++++.. ..++.+++++||||+++++|++++.+.+..
T Consensus 225 ~~-----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~ 299 (384)
T 3saj_A 225 DL-----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRID 299 (384)
T ss_dssp CH-----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cH-----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 22 2333455678899888888999999999999887521 134677999999999999999999875433
Q ss_pred ccccCCccccCCCCCccccCCc--cccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEee
Q 008904 335 ISFSNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 412 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~ 412 (549)
... .+....|... .+|.++..|.++|++++|+|++|+++||++|++....|+|+++++++. ++||.|+
T Consensus 300 ~~~---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~W~ 369 (384)
T 3saj_A 300 ISR---------RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGI-RKIGYWN 369 (384)
T ss_dssp CCC---------CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE-EEEEEEE
T ss_pred eec---------CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCc-ceeEEEc
Confidence 211 1234568753 567789999999999999999999999999999889999999998887 9999999
Q ss_pred CCCCCccc
Q 008904 413 NYSGLSVV 420 (549)
Q Consensus 413 ~~~~l~~~ 420 (549)
+..|+.+.
T Consensus 370 ~~~gl~~~ 377 (384)
T 3saj_A 370 EDDKFVPA 377 (384)
T ss_dssp TTTEEEEC
T ss_pred CCCCcccc
Confidence 98887654
|
| >3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-50 Score=400.35 Aligned_cols=338 Identities=21% Similarity=0.309 Sum_probs=282.3
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEc----
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ-FMETDTLAIVG---- 97 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~aiiG---- 97 (549)
.+++|+||+++|++ ..+.|+++|+++||++++. .+++|+++..|+++|+.++++.+|+ |++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46799999999997 5789999999999999865 5789999999999999999988777 78889999999
Q ss_pred -CCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccch
Q 008904 98 -PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (549)
Q Consensus 98 -p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~ 175 (549)
|.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++|+|+||++||+|++||+..
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 567888899999999999999999999998987 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCeEE-----------EEE-------E---ccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHH
Q 008904 176 VTALGDKLAEIRCKI-----------SYK-------S---ALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 234 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v-----------~~~-------~---~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~i 234 (549)
.+.|++.+++.|+++ .+. . .+. ....++..++.+|+++++++||+++....+..+
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~----~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 231 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFE----PGTKNLTALLLEAKELEARVIILSASEDDATAV 231 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEEC----TTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccC----CchhhHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 999999999988743 221 1 122 125688999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhH
Q 008904 235 FDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYA 314 (549)
Q Consensus 235 l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (549)
+++|+++||+..+|+||+++.+... ........|++++..+.+.. .++.+
T Consensus 232 ~~~a~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~----------------------~~~~~ 281 (384)
T 3qek_A 232 YKSAAMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN----------------------ESAHI 281 (384)
T ss_dssp HHHHHHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC----------------------HHHHH
T ss_pred HHHHHHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc----------------------hhHHH
Confidence 9999999999888999999986532 12235678999999875533 26789
Q ss_pred hHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccC-CccccCchHHHHHHHHhccc-cccceeeEEccCCCCCCC
Q 008904 315 YDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLG-ALSIFDGGKKFLANILQTNM-TGLSGPIHFNQDRSLLHP 392 (549)
Q Consensus 315 yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~~~~l~~~l~~~~f-~g~tG~v~fd~~g~r~~~ 392 (549)
||||+++|+|+++++.+... ..+...|. ...+|..+..|.+++++++| +|++|++.||++|+|...
T Consensus 282 YdAV~~~a~Al~~~~~~~~~------------~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~ 349 (384)
T 3qek_A 282 SDAVAVVAQAIHELFEMENI------------TDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFA 349 (384)
T ss_dssp HHHHHHHHHHHHHHHTSSSC------------CCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSC
T ss_pred HHHHHHHHHHHHHHHhccCC------------CCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcc
Confidence 99999999999999865421 11233464 35678889999999999998 999999999999998789
Q ss_pred ceEEEEEeeCceeeEEeEeeC
Q 008904 393 SYDIINVIEHGYPQQIGYWSN 413 (549)
Q Consensus 393 ~~~I~~~~~~~~~~~VG~w~~ 413 (549)
.|+|+++++.++ ++||.|+.
T Consensus 350 ~~~I~~~~~~~~-~~VG~w~~ 369 (384)
T 3qek_A 350 QYSIMNLQNRKL-VQVGIFNG 369 (384)
T ss_dssp CEEEEEEETTEE-EEEEEECS
T ss_pred cEEEEEEcCCce-EEEEEEeC
Confidence 999999998776 99999984
|
| >3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=352.33 Aligned_cols=341 Identities=14% Similarity=0.223 Sum_probs=260.9
Q ss_pred CceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEe-cCCCChHHHHHHHHHHHhc-CcEEEEc-CCC
Q 008904 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMET-DTLAIVG-PQS 100 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~-d~~~~~~~a~~~~~~l~~~-~v~aiiG-p~~ 100 (549)
+..+.||++|..+.. +.+++-|++..|.-. +..+|..++. ...+||..+.+.+|+++.. +|.|||| |.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHH---LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCcccccc---CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 457899999977652 889999999998543 2356766544 3567999999999999975 7989885 444
Q ss_pred chHHHH--HHHhhhhcCCcEEecccCCC-CCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchH
Q 008904 101 AVMAHV--LSHLANELQVPLLSFTALDP-TLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 101 s~~~~~--va~~~~~~~iP~Is~~~~~~-~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
+..+.+ ++.+++.+++|+|+++++++ .|++ .+||++||+.|++..|+.++++++++|||++|++||+|+ ...
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccH
Confidence 444545 89999999999999999988 8998 479999999999999999999999999999999999874 345
Q ss_pred HHHHHHHhhc--C--eEEEEEEccCCCCCCChhhHHHHH-HHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 177 TALGDKLAEI--R--CKISYKSALPPDQSVTETDVRNEL-VKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 177 ~~l~~~~~~~--g--~~v~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.|.+.+++. | +|+.+...++.. ....+++..+ ++++++++++||++|+.+.+..++++|.++||+.++|+||
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~--~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEEC--TTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHHHHHhhccccceEEEEEEccC--CCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 5666666554 4 477766554433 2234566778 6899999999999999999999999999999999999999
Q ss_pred EeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhc
Q 008904 252 ATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQ 331 (549)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 331 (549)
+++.+....+... .....|++++++.. |+. ...+++||||+++|+|++++.++
T Consensus 228 ~t~~~~~~~~~~~------~~~~~g~~~~~~~~------------W~~---------~~~~~~yDaV~~~A~A~~~~~~~ 280 (364)
T 3qel_B 228 VPSLVAGDTDTVP------SEFPTGLISVSYDE------------WDY---------GLPARVRDGIAIITTAASDMLSE 280 (364)
T ss_dssp ECHHHHCSTTCCC------TTSCTTCEECCBCT------------TTS---------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EecccccCccccc------ccCCCceEEEeecc------------chh---------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 9987643332211 13457888877643 321 23578999999999999998765
Q ss_pred CCCccccCCccccCCCCCccccCCcc--ccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEee-CceeeEE
Q 008904 332 GNTISFSNDTKLNGLGGGTLNLGALS--IFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIE-HGYPQQI 408 (549)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~-~~~~~~V 408 (549)
.... .....+|.... +|.+|..|.++|++++|+|+ ++.||++|+|.++.|+|+|++. .++ ++|
T Consensus 281 ~~~i-----------~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~-~~V 346 (364)
T 3qel_B 281 HSFI-----------PEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKW-ERV 346 (364)
T ss_dssp TSCC-----------CCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCE-EEE
T ss_pred cCCC-----------CCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCc-EEE
Confidence 3221 12345787653 57889999999999999998 8999999999999999999984 555 999
Q ss_pred eEeeCCCCCccc
Q 008904 409 GYWSNYSGLSVV 420 (549)
Q Consensus 409 G~w~~~~~l~~~ 420 (549)
|.|++. +|+|+
T Consensus 347 G~W~~~-~L~~~ 357 (364)
T 3qel_B 347 GKWKDK-SLQMK 357 (364)
T ss_dssp EEECSS-CEEES
T ss_pred EEECCC-eEEeC
Confidence 999843 56553
|
| >3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=326.87 Aligned_cols=355 Identities=14% Similarity=0.115 Sum_probs=295.5
Q ss_pred CCceEEEEEEeccCCC--CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCC
Q 008904 23 KPEVLNVGAIFSFGTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQ 99 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~--~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~ 99 (549)
..++|+||+++|++.. .|.....++++|+++||+++++++|++|+++++|+++++..+.+.+++++.+ +|.+||||.
T Consensus 2 s~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~ 81 (387)
T 3i45_A 2 SLEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTF 81 (387)
T ss_dssp CCCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECC
T ss_pred CCCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCc
Confidence 3578999999999763 4667889999999999999999866999999999999999999999999985 999999999
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~ 178 (549)
+|..+.++++++...++|+|++.++++.++. ..+||+||+.|++..++.++++++.+++|++|++|+.+++||....+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~ 161 (387)
T 3i45_A 82 LSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVAR 161 (387)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHH
Confidence 9999999999999999999999888877775 568999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc--CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 179 LGDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 179 l~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+++.+++. |++++....++.. ..++...++++++.++++|++++....+..++++++++|+... +|+.+..+
T Consensus 162 ~~~~l~~~~~g~~vv~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~ 235 (387)
T 3i45_A 162 FKELLLAARPEVTFVAEQWPALY----KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLT 235 (387)
T ss_dssp HHHHHHHHCTTCEEEEEECCCTT----CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEE
T ss_pred HHHHHHHhCCCcEEEeeecCCCC----CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecC
Confidence 99999998 8999887777654 5688999999999999999999999999999999999998533 34443222
Q ss_pred ccccCCCCcCChhhHhhccceEEEeE--ecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 257 STFIDSKSPLSLKTAKSILGALTLRQ--HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
....... ........|++.... .....+..++|.++|+++++ ..++.++...|||++++++|++++..
T Consensus 236 ~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~Yda~~~~a~Al~~ag~---- 305 (387)
T 3i45_A 236 GEPEYLN----PLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK--EDPFVGSLVGYNTLTAMAVAFEKAGG---- 305 (387)
T ss_dssp ESHHHHG----GGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTS----
T ss_pred CChHHHH----HhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHHHHHHHhCC----
Confidence 1110000 001123567665432 23567889999999999987 46778899999999999999998621
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEe-eCceeeEEeEeeC
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQIGYWSN 413 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~-~~~~~~~VG~w~~ 413 (549)
. ++..|.++|++++|+|++|+++|++++++......|.+++ .++. ..++.|..
T Consensus 306 ------------------------~-~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~-~~i~~w~~ 359 (387)
T 3i45_A 306 ------------------------T-ESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGK-GVMVDWRY 359 (387)
T ss_dssp ------------------------C-CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTE-EEEEEEEE
T ss_pred ------------------------C-CHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCc-eeEEeeEE
Confidence 1 4889999999999999999999997555566778888876 5566 88999987
Q ss_pred CCCCcc
Q 008904 414 YSGLSV 419 (549)
Q Consensus 414 ~~~l~~ 419 (549)
..|...
T Consensus 360 ~~~~~~ 365 (387)
T 3i45_A 360 VDGGSV 365 (387)
T ss_dssp ECGGGG
T ss_pred eCchhc
Confidence 766544
|
| >3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=330.95 Aligned_cols=331 Identities=15% Similarity=0.099 Sum_probs=270.7
Q ss_pred CCCCceEEEEEEeccCCCC---chHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC-CChHHHHHHHHHHHh-cCcEEE
Q 008904 21 ALKPEVLNVGAIFSFGTVN---GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFME-TDTLAI 95 (549)
Q Consensus 21 ~~~~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~-~~~~~a~~~~~~l~~-~~v~ai 95 (549)
+...++|+||+++|++... |.....++++|+++||+++|++ |++|+++++|++ +++..+++.+++++. ++|.+|
T Consensus 9 a~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~ai 87 (419)
T 3h5l_A 9 AQSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASAL 87 (419)
T ss_dssp ----CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEE
T ss_pred hccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 3567899999999998643 7788999999999999999997 899999999987 599999999999998 699999
Q ss_pred EcCCCchHHHHHHHhhhhcCCcEEecccCCCCCC-----C-CCCCceEEccCCcHHHHHHHHHHHHHc--------CCcE
Q 008904 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-----P-LQYPFFVQTAPNDLYLMSAIAEMVSYF--------GWGE 161 (549)
Q Consensus 96 iGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls-----~-~~~~~~~r~~ps~~~~~~ai~~~l~~~--------~W~~ 161 (549)
|||.+|..+.++++++..+++|+|++++ .+.++ + ..|+|+||+.|++..++.+++++++++ +|++
T Consensus 88 iG~~~s~~~~a~~~~~~~~~ip~i~~~~-~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (419)
T 3h5l_A 88 IAGYNLENGTALHDVAADAGVIAMHANT-VAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNK 166 (419)
T ss_dssp ECSCCSSCSCHHHHHHHHHTCEEEECCC-CHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSE
T ss_pred EccccchhHHHhHHHHHHcCCeEEEcCc-chhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCE
Confidence 9999999999999999999999999643 32221 2 368999999999999999999999886 8999
Q ss_pred EEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHHHHHH
Q 008904 162 VIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQR 240 (549)
Q Consensus 162 v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~~a~~ 240 (549)
|++|+++++||....+.|++.+++.|++|+....++.. ..++..++.+|++.++++|++.+. +..+..+++++++
T Consensus 167 vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~ 242 (419)
T 3h5l_A 167 IAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMT 242 (419)
T ss_dssp EEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS----CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTT
T ss_pred EEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHH
Confidence 99999999999999999999999999999988888755 578899999999999999999865 5789999999999
Q ss_pred cCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEe-cCCChhHHHHHHHHHhhcCCCCCCC-chhhhHhHHH
Q 008904 241 LGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQH-TPDSKRRRDFVSRWNTLSNGSIGLN-PYGLYAYDTV 318 (549)
Q Consensus 241 ~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~yDav 318 (549)
.|+ ...|+.++.+...... ........|++..... .+..+..++|.++|+++++. .+. .+++..|||+
T Consensus 243 ~g~---~~~~~~~~~~~~~~~~-----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~--~p~~~~a~~~Yda~ 312 (419)
T 3h5l_A 243 DPT---NSLVYLQYGASLAAFR-----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD--LSSTASGCQTYSAL 312 (419)
T ss_dssp SCC---SCEEEECSGGGSHHHH-----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT--TSCHHHHHHHHHHH
T ss_pred cCC---CceEEecCCCCcHHHH-----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC--CCCcchhHHHHHHH
Confidence 987 3456666554321000 1223456777655433 34567899999999999873 343 5889999999
Q ss_pred HHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCC
Q 008904 319 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSL 389 (549)
Q Consensus 319 ~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r 389 (549)
+++++|++++..... ...+.++..+.++|++++|+|++|.++||++|++
T Consensus 313 ~~~~~a~~~a~~~~~----------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~ 361 (419)
T 3h5l_A 313 YAYSIAAALAGGPGA----------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQS 361 (419)
T ss_dssp HHHHHHHHHTTSCCC----------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCB
T ss_pred HHHHHHHHHhcCCcc----------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCc
Confidence 999999998643211 0112248899999999999999999999999984
|
| >3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-39 Score=317.42 Aligned_cols=345 Identities=14% Similarity=0.125 Sum_probs=290.7
Q ss_pred ceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 25 EVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 25 ~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
++|+||+++|++.. .|.....++++|++++|+++|+ +|+++++++.|+++++..+.+.++++++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 47999999999753 5677899999999999999998 5999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH-HHcCCcEEEEEEecCCcccchHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l-~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
..+.++++++...++|+|++.++++.+++..++++||+.|++..++.++++++ +++||++|++|+.++.++....+.+.
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999888887777668999999999999999999965 55799999999999899999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|+++.....++.. ..++...++++++.++++|++++....+..+++++++.|+.. .|+..+.+....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~ 232 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKA---KLVSGDGIVSNE 232 (356)
T ss_dssp HHHHHTTCCCSEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCC---EEEECGGGCSHH
T ss_pred HHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCC---cEEEeccccCHH
Confidence 9999999998777666644 567788899999999999999999999999999999999864 367665443210
Q ss_pred CCCCcCChhhHhhccceEEEeEecC-CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTP-DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.. ........|++....+.+ ..+..++|.+.|+++ + ..++.++...|||++++++|++++..
T Consensus 233 ~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--~~p~~~~~~~yda~~~~~~al~~ag~--------- 295 (356)
T 3ipc_A 233 LA-----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--FNPEAYTLYSYAAMQAIAGAAKAAGS--------- 295 (356)
T ss_dssp HH-----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--CCCCTTHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HH-----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--CCcchhHHHHHHHHHHHHHHHHHhCC---------
Confidence 00 122345677776655443 457889999999988 4 45777899999999999999998621
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeC--ceeeEEeEeeCC
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH--GYPQQIGYWSNY 414 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~--~~~~~VG~w~~~ 414 (549)
. ++..+.++|++.+|+|++|++.||++|++....|.|++++.+ |.|+.+..|.+.
T Consensus 296 -------------------~-~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 -------------------V-EPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp -------------------C-CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred -------------------C-CHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 1 488999999999999999999999999988788999999865 666999998764
|
| >4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=315.98 Aligned_cols=337 Identities=16% Similarity=0.152 Sum_probs=281.9
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC-ChHHHHHHHHHHHhc-CcEEEEc
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMET-DTLAIVG 97 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~-~~~~a~~~~~~l~~~-~v~aiiG 97 (549)
..++|+||+++|++.. .|.....++++|++++| +++ .|++|+++++|+.+ +|..+++.+.+|+.+ +|.+|||
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG 78 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAG 78 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3578999999999854 46788999999999998 566 49999999999975 899999999999976 9999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHH
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~ 177 (549)
|.+|..+.+++++++..++|+|+++++++.+++. .||+||+.|++..++.++++++++.+|+++++|+++++||....+
T Consensus 79 ~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~ 157 (371)
T 4f06_A 79 LYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAET 157 (371)
T ss_dssp CCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred cccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHH
Confidence 9999999999999999999999998888777653 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc-hHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~-~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
.+++.+++.|++|+....++.+ .+|+..++.+|+++++++|++.+. ......+++++++.|+....+.++.....
T Consensus 158 ~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (371)
T 4f06_A 158 AFKKTFEAEGGKVVEAVRMPLS----TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDV 233 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGG
T ss_pred HHHHHHHhcCCceEEEEecCcc----cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEeccc
Confidence 9999999999999998888865 678999999999999999987765 46788899999999987766677666543
Q ss_pred ccccCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
...... ........|++....+.+ ..|..++|.+.|+++++....++.++...||++++++.|+++.. +.
T Consensus 234 ~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~~~a---g~ 305 (371)
T 4f06_A 234 VTEPDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIEATS---GK 305 (371)
T ss_dssp GCGGGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHHHTT---TS
T ss_pred CCHHHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHhc---CC
Confidence 222111 122345667776665443 46788999999999886545677888999999999999998631 10
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEe
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI 400 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~ 400 (549)
. ++..+.++|++++|+|++|+++||++++.....+.|.+++
T Consensus 306 ------------------------~-d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~ 346 (371)
T 4f06_A 306 ------------------------S-DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVE 346 (371)
T ss_dssp ------------------------C-CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEE
T ss_pred ------------------------C-CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEE
Confidence 1 4889999999999999999999998876555667777776
|
| >3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=311.26 Aligned_cols=342 Identities=15% Similarity=0.198 Sum_probs=286.8
Q ss_pred CCCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 008904 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 97 (549)
..+.+++||+++|++.. .|.....++++|++++|+ + .|+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEc
Confidence 45679999999999854 467889999999999999 5 48999999999999999999999999988 5999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH-HHcCCcEEEEEEe-cCCcccch
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFN-DDDQGRNG 175 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l-~~~~W~~v~ii~~-~~~~g~~~ 175 (549)
|.++..+.++++++..+++|+|++.++++.+++ .++++||+.|++..++.++++++ +++||++|++||. +++|+...
T Consensus 88 ~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~ 166 (366)
T 3td9_A 88 EVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGL 166 (366)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHH
Confidence 999999999999999999999999877776654 46999999999999999999999 5589999999986 67788888
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
.+.+.+.+++.|+++.... ++.. ..++...++++++.++++|++.+....+..+++++++.|+.. .|+..+.
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~ 238 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FRSG----DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDG 238 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-ECTT----CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGG
T ss_pred HHHHHHHHHHCCCEEEEEE-eCCC----CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCC
Confidence 8999999999999998877 6644 567888899999999999999899999999999999999753 4676654
Q ss_pred cccccCCCCcCChhhHhhccceEEEeEecCC---ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcC
Q 008904 256 LSTFIDSKSPLSLKTAKSILGALTLRQHTPD---SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 332 (549)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 332 (549)
+...... ........|++....+.+. .+..++|.+.|+++++ ..++.++...|||++++++|++++..
T Consensus 239 ~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~yda~~~~~~al~~ag~-- 309 (366)
T 3td9_A 239 ADAPELI-----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG--KEPAALNALGYDAYMVLLDAIERAGS-- 309 (366)
T ss_dssp GCSTHHH-----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred cCCHHHH-----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCCchhHHHHHHHHHHHHHHHHHhCC--
Confidence 4321000 1223467788777655443 6789999999999987 45788899999999999999998621
Q ss_pred CCccccCCccccCCCCCccccCCccccCchHHHHHHHHhcc-ccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEe
Q 008904 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN-MTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 411 (549)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~-f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w 411 (549)
. ++..+.++|++++ |+|++|++.|+++|++. ..+.|++++++.+ +.|+.|
T Consensus 310 --------------------------~-~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~-~~v~~~ 360 (366)
T 3td9_A 310 --------------------------F-DREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSV-DFEAVI 360 (366)
T ss_dssp --------------------------C-CHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEE-EEEEEE
T ss_pred --------------------------C-CHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEE-EEEEec
Confidence 1 4889999999998 99999999999999975 5589999985555 999999
Q ss_pred eCC
Q 008904 412 SNY 414 (549)
Q Consensus 412 ~~~ 414 (549)
++.
T Consensus 361 ~~~ 363 (366)
T 3td9_A 361 NPD 363 (366)
T ss_dssp CGG
T ss_pred Chh
Confidence 875
|
| >1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=306.76 Aligned_cols=340 Identities=14% Similarity=0.163 Sum_probs=280.8
Q ss_pred ceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 25 EVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 25 ~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
++|+||+++|++.. .|.....++++|+++||+++++ +|++|++++.|+++++..+.+.+.++++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 47999999999754 4667889999999999999998 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHH-HcCCcEEEEEEecCCcccchHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~-~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
..+.++.+++...++|+|++.++++.+++..++++||+.|++..++.++++++. ++||++|++|+.++.++....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 888889999999999999987777667654578999999999999999999985 5799999999998888888889999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..+ |+.++.+...
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~- 231 (346)
T 1usg_A 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNA- 231 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCT-
T ss_pred HHHHHcCCEEEEEeccCCC----CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcH-
Confidence 9999999998876666543 3466778899988899999998887888899999999998643 7777654321
Q ss_pred CCCCcCChhhHhhccceEEEeEe-cCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQH-TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
... ........|++...++ ....+..++|.+.|+++++ ..++.++..+|||++++++|++++..
T Consensus 232 ~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~yda~~~~~~al~~~g~--------- 296 (346)
T 1usg_A 232 SLS----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK--DPSGPYVWITYAAVQSLATALERTGS--------- 296 (346)
T ss_dssp THH----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HHH----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHHHHHHHHhCC---------
Confidence 100 1122456787776544 2345778999999998876 45677899999999999999998621
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEE
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 408 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~V 408 (549)
. ++..|.++|++.+|+|++|++.|+++|++....|.|++++.+|.|+.|
T Consensus 297 -------------------~-~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 -------------------D-EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp -------------------C-CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred -------------------C-CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 1 388999999999999999999999999987678999999733333543
|
| >3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=305.71 Aligned_cols=344 Identities=15% Similarity=0.126 Sum_probs=287.1
Q ss_pred CceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEcCC
Q 008904 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM-ETDTLAIVGPQ 99 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aiiGp~ 99 (549)
.++|+||+++|++.. .|.....++++|++++|++++++ |+++++++.|+++++..+.+.+.+++ +++|.+||||.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 468999999999743 46778999999999999999997 99999999999999999999999999 67999999999
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l 179 (549)
++..+.++.+++...++|+|++.++++.+++.. +++||+.|++..++.++++++.+.||++|++|+.++.++....+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999888777776544 8999999999999999999999899999999999999999999999
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccc
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 259 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 259 (549)
.+.+++.|+++.....++.. ..++...++++++.++++|++.++...+..+++++++.|+..+ |+..+.+...
T Consensus 160 ~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~ 232 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVPPG----NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSP 232 (358)
T ss_dssp HHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSH
T ss_pred HHHHHHcCCEEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCH
Confidence 99999999999877666644 4567788899988889999999999899999999999998543 7766544321
Q ss_pred cCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccc
Q 008904 260 IDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 337 (549)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 337 (549)
... ........|++...++.+ ..+..++|.+.|+++++ ..++.+++..|||++++++|++++...
T Consensus 233 ~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~~ag~~------ 299 (358)
T 3hut_A 233 KFI-----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG--AIPTLFAAHGYDAVGIMLAAVGRAGPE------ 299 (358)
T ss_dssp HHH-----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHH-----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHhCCC------
Confidence 100 122345778887776544 46789999999999987 467889999999999999999996211
Q ss_pred cCCccccCCCCCccccCCccccCchHH-HHHHHHhc-cccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeC
Q 008904 338 SNDTKLNGLGGGTLNLGALSIFDGGKK-FLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 413 (549)
Q Consensus 338 ~~~~~~~~~~~~~~~c~~~~~~~~~~~-l~~~l~~~-~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~ 413 (549)
++.. +.++|+++ +|+|++|+++|+++|++....+.|+++++ |.|+.+..+.+
T Consensus 300 -----------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~-G~~~~~~~~~~ 353 (358)
T 3hut_A 300 -----------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVRE-GDFRVIDREGH 353 (358)
T ss_dssp -----------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEET-TEEEEC-----
T ss_pred -----------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEEC-CEEEEeccccc
Confidence 3667 99999999 89999999999999997567889999974 44477765544
|
| >3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-37 Score=307.20 Aligned_cols=333 Identities=15% Similarity=0.147 Sum_probs=283.4
Q ss_pred CceEEEEEEeccCCC---C-chHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 008904 24 PEVLNVGAIFSFGTV---N-GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~---~-g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp 98 (549)
.++|+||+++|++.. . |.....++++|++++ ++++ .|++++++++|+++++..+.+.+.+++. ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKV-NGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 468999999999743 3 677899999999999 4566 4899999999999999999999999998 799999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~ 177 (549)
.+|..+.++++++..+++|+|+++++++.+++ ..+||+||+.|++..++.++++++.+++|++|++|+.++.+|....+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999888887776 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcc
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 257 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 257 (549)
.+.+.+++.|++++....++.. ..++...+.++++.++++|++.+....+..++++++++|+..+. .++..+.+.
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~ 233 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPLS----ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFI 233 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCH
T ss_pred HHHHHHHHcCCEEeeeeeCCCC----CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccch
Confidence 9999999999999887777754 56788899999999999999999998999999999999987665 444444333
Q ss_pred cccCCCCcCChhhHhhccceEEEeEecCC-ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcc
Q 008904 258 TFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (549)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 336 (549)
..+. ........|++....+.+. .+..++|.++|+++++ ..++.+++..|||++++++|++++..
T Consensus 234 ~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~~~~Al~~ag~------ 299 (375)
T 3i09_A 234 NDVH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK--KMPSSLQAADYSSVTTYLKAVQAAGS------ 299 (375)
T ss_dssp HHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTS------
T ss_pred hhHh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhCC------
Confidence 2210 1112456787776654433 5789999999999987 56788899999999999999999621
Q ss_pred ccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeC
Q 008904 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH 402 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~ 402 (549)
. ++..|.++|++++|+|++|.+.|+++|++. ..+.|+++++.
T Consensus 300 ----------------------~-~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~ 341 (375)
T 3i09_A 300 ----------------------T-DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKP 341 (375)
T ss_dssp ----------------------C-CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCG
T ss_pred ----------------------C-CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEecc
Confidence 1 488999999999999999999999999875 56778888743
|
| >3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=307.94 Aligned_cols=350 Identities=15% Similarity=0.168 Sum_probs=284.6
Q ss_pred CceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCC-CCc--eEEEEEecCCCChHHHHHHHHHHH-hcCcEEEE
Q 008904 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVL-GGR--KLSITMHDAKFNGFLSIMGALQFM-ETDTLAIV 96 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il-~g~--~l~~~~~d~~~~~~~a~~~~~~l~-~~~v~aii 96 (549)
.++|+||+++|++.. .|.....++++|+++||+++|++ +|+ +|++++.|+++++..+.+.+.+++ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 468999999999854 46678999999999999999985 699 999999999999999999999999 67999999
Q ss_pred cCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-cCCcEEEEEEe-cCCcccc
Q 008904 97 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFN-DDDQGRN 174 (549)
Q Consensus 97 Gp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~~v~ii~~-~~~~g~~ 174 (549)
| .+|..+.++++++...++|+|++.++.+ +. .+|++||+.|++..++.++++++.+ +||++|++|+. ++++|..
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6888999999999999999999765543 33 5799999999999999999999877 69999999999 8999999
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHH--HhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK--VRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~--l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
..+.+++.+++.|+++.....++.. ..++...+.+ +++.++++|++.+....+..++++++++|+.. .++.
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~---~~~~ 230 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLPLR----ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDA---FLLT 230 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECCTT----CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCC---EEEE
T ss_pred HHHHHHHHHHHcCCceeeeeccCCC----CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCc---eEEE
Confidence 9999999999999999888777754 6688999999 99999999999999899999999999999854 3555
Q ss_pred eCCcccccCCCCcCChhhHhhccc-eEEEeEec-----CCChhHHHHHHHHHhhcC-CCCCCCchhhhHhHHHHHHHHHH
Q 008904 253 TTWLSTFIDSKSPLSLKTAKSILG-ALTLRQHT-----PDSKRRRDFVSRWNTLSN-GSIGLNPYGLYAYDTVWMIARAL 325 (549)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~yDav~~~a~Al 325 (549)
.++.... ... ........| ++....+. ...+. .+|.++|+++++ .....+.++...|||++++++|+
T Consensus 231 ~~~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~p~~~~~~~~~yda~~~l~~Al 304 (391)
T 3eaf_A 231 NVWGFDE-RSP----QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVSEDQINLRVVQGFVNVWLLIKAI 304 (391)
T ss_dssp CGGGCST-THH----HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCCH-HHH----HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCCCcccccHHHHHHHHHHHHHHHH
Confidence 4432211 110 122345788 66665544 23444 679999999987 22223578899999999999999
Q ss_pred HHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhcccc--ccce-eeEEccCCCCCCCceEEEEEeeC
Q 008904 326 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMT--GLSG-PIHFNQDRSLLHPSYDIINVIEH 402 (549)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~--g~tG-~v~fd~~g~r~~~~~~I~~~~~~ 402 (549)
+++...+.. .. ++..|.++|++.+|+ |++| ++.|+++|++....+.|++++.+
T Consensus 305 ~~a~~~g~~-----------------------~~-~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~ 360 (391)
T 3eaf_A 305 ESVTSQDLQ-----------------------ER-GGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGEN 360 (391)
T ss_dssp TTSCHHHHH-----------------------HH-THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTT
T ss_pred HHHHhcCCC-----------------------CC-CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecC
Confidence 885211100 01 488999999998898 9999 99999876666788999999445
Q ss_pred ceeeEEeEeeCC
Q 008904 403 GYPQQIGYWSNY 414 (549)
Q Consensus 403 ~~~~~VG~w~~~ 414 (549)
|.|+.|+.|...
T Consensus 361 G~~~~v~~~~~~ 372 (391)
T 3eaf_A 361 GELQLMGKFEAP 372 (391)
T ss_dssp SSEEEEEEECCC
T ss_pred CEEEEeeeecCc
Confidence 555999999753
|
| >4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=304.38 Aligned_cols=346 Identities=11% Similarity=0.130 Sum_probs=289.3
Q ss_pred CCCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 008904 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 97 (549)
...++|+||+++|++.. .|.....++++|++++| +++ +|+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 12 a~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 88 (375)
T 4evq_A 12 AQAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIG 88 (375)
T ss_dssp ---CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEE
T ss_pred hhCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEc
Confidence 56689999999999743 46678999999999998 444 79999999999999999999999999985 9999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchH
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
|.++..+.++.+++...++|+|++.++++.+++. .+|++||+.|++..++.++++++.++||++|++|+.++.+|....
T Consensus 89 ~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 168 (375)
T 4evq_A 89 TVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMV 168 (375)
T ss_dssp CSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHH
Confidence 9999999999999999999999998887777763 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..+ |+.++ +
T Consensus 169 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-~ 240 (375)
T 4evq_A 169 SGFKKSFTAGKGEVVKDITIAFP----DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-F 240 (375)
T ss_dssp HHHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG-G
T ss_pred HHHHHHHHHcCCeEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC-c
Confidence 99999999999999877666644 4577788999988899999998888999999999999997632 55554 3
Q ss_pred ccccCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
... ... ........|++...++.+ ..+..++|.+.|+++++ ..++.++...|||++++++|++++...
T Consensus 241 ~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~~~g~~--- 310 (375)
T 4evq_A 241 LTD-GVE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK--IPPDVFAVQGWDAGQLLDAGVKAVGGD--- 310 (375)
T ss_dssp GTT-TTH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred CCH-HHH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 211 110 223356788887766544 45889999999999887 567788999999999999999985210
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEeeCC
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNY 414 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w~~~ 414 (549)
+.++..|.++|++++|+|++|++.|+++|++ ...+.|++++++.+ +.|+.+.+.
T Consensus 311 ------------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~-~~v~~~~~~ 364 (375)
T 4evq_A 311 ------------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKS-VNLGLAAPA 364 (375)
T ss_dssp ------------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEE-EEEEEEECS
T ss_pred ------------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCc-EEeeehhhc
Confidence 1148899999999999999999999999987 46899999986665 999988653
|
| >3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=305.79 Aligned_cols=334 Identities=12% Similarity=0.101 Sum_probs=280.7
Q ss_pred CCceEEEEEEeccCCC---C-chHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEc
Q 008904 23 KPEVLNVGAIFSFGTV---N-GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVG 97 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~-g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiG 97 (549)
..++|+||+++|++.. . |.....++++|++++ ++++ .|++++++++|+++++..+.+.+.+++. ++|.+|||
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKA-LGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEE-TTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 3568999999999743 3 677899999999999 4566 4899999999999999999999999998 79999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchH
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
|.+|..+.++++++..+++|+|++.++++.+++ ..+||+||+.|++..++.++++++.++||++|++|++++.+|....
T Consensus 80 ~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~ 159 (379)
T 3n0w_A 80 VVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMN 159 (379)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHH
Confidence 999999999999999999999999888888877 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+++.+++.|+++.....++.. ..++...+.+++++++++|++.+....+..++++++++|+..+.+ ++.+..+
T Consensus 160 ~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 234 (379)
T 3n0w_A 160 AAIRRELTAGGGQIVGSVRFPFE----TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMID 234 (379)
T ss_dssp HHHHHHHHHHTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBC
T ss_pred HHHHHHHHHcCCEEEEEEeCCCC----CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEeccc
Confidence 99999999999999888777754 567888999999999999999999899999999999999876543 4443322
Q ss_pred -ccccCCCCcCChhhHhhccceEEEeEecCC-ChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCC
Q 008904 257 -STFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 334 (549)
Q Consensus 257 -~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 334 (549)
...+. ........|++....+.+. .+..++|.++|+++++ ..++.+++..|||++++++|++++..
T Consensus 235 ~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~Yda~~~~~~Al~~ag~---- 302 (379)
T 3n0w_A 235 ILTDVK------SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG--KMPTNNQAGGYSAALQYLKAVNAIGS---- 302 (379)
T ss_dssp CHHHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred chHHHH------hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC--CCCChHHHHHHHHHHHHHHHHHHhCC----
Confidence 21110 1112457787766654433 5789999999999987 46788899999999999999999621
Q ss_pred ccccCCccccCCCCCccccCCccccCchHHHHHHHHhcccccccee-eEEccCCCCCCCceEEEEEeeC
Q 008904 335 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP-IHFNQDRSLLHPSYDIINVIEH 402 (549)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~-v~fd~~g~r~~~~~~I~~~~~~ 402 (549)
. ++..|.++|++++|++..|. +.|+++|++ ...+.|++++++
T Consensus 303 ------------------------~-~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~ 345 (379)
T 3n0w_A 303 ------------------------K-DPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKP 345 (379)
T ss_dssp ------------------------C-CHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCG
T ss_pred ------------------------C-CHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEch
Confidence 1 48899999999999999985 999999986 467888888743
|
| >3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=310.46 Aligned_cols=352 Identities=11% Similarity=0.008 Sum_probs=289.9
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 98 (549)
..++|+||+++|++.. .|.....++++|++++|+++|++ |+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 4579999999999754 46678999999999999999996 8999999999999999999999999997 9999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHH-cCCcEEEEEEecCCcccchH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~~v~ii~~~~~~g~~~~ 176 (549)
.+|..+.++++++...++|+|+++++.+ +.+ ..++++||+.|++..++.++++++.+ +||++|++|+.++++|....
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 6888889999999999999999765443 444 46799999999999999999999877 69999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+++.+++.|+++.....++.. ..++...+.++++.++++|++.+....+..++++++++|+.. .|+.++++
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 233 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVGSG----NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLGAHYT 233 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGG
T ss_pred HHHHHHHHHcCCeEEEEEeeCCC----CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEEecCc
Confidence 99999999999999887777644 567888899999999999999999999999999999999753 46666543
Q ss_pred ccccCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCC----chhhhHhHHHHHHHHHHHHHHh
Q 008904 257 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLN----PYGLYAYDTVWMIARALKLFLD 330 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~----~~~~~~yDav~~~a~Al~~~~~ 330 (549)
...... ........|++....+.+ ..+..++|.++|+++++. .+. .++...|||++++++|++++..
T Consensus 234 ~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~p~~~~~~~~~~~yda~~~~~~al~~ag~ 306 (392)
T 3lkb_A 234 GGPDLI-----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR--PENFIESVNYTNGMLAAAIAVEAIRRAQE 306 (392)
T ss_dssp CSHHHH-----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC--CHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC--CcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 221000 122345778877765533 245678999999998873 333 3368899999999999999754
Q ss_pred cCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhcc----cc-------ccceeeEEccCCCCCCCceEEEEE
Q 008904 331 QGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN----MT-------GLSGPIHFNQDRSLLHPSYDIINV 399 (549)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~----f~-------g~tG~v~fd~~g~r~~~~~~I~~~ 399 (549)
.++. .++..|.++|++++ |+ |++|++.|+++|++....+.|+++
T Consensus 307 ~~~~-------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~ 361 (392)
T 3lkb_A 307 RFKR-------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEA 361 (392)
T ss_dssp HHSS-------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEE
T ss_pred cCCC-------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEE
Confidence 2111 14889999999997 98 999999999988876677899999
Q ss_pred eeCceeeEEeEeeCCCCC
Q 008904 400 IEHGYPQQIGYWSNYSGL 417 (549)
Q Consensus 400 ~~~~~~~~VG~w~~~~~l 417 (549)
+++.+ +.|+.|....++
T Consensus 362 ~~g~~-~~v~~w~~~~~~ 378 (392)
T 3lkb_A 362 KGGRF-VPVTEPFTSALF 378 (392)
T ss_dssp ETTEE-EECSCCBCCHHH
T ss_pred eCCEE-EEeccccchhHH
Confidence 76555 999999876544
|
| >4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=301.69 Aligned_cols=337 Identities=17% Similarity=0.215 Sum_probs=268.4
Q ss_pred CCCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 008904 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 97 (549)
..+++|+||+++|++.+ .|.....++++|+++||+.+|++ |++|+++++|++++|..+++.+.+|+.+ ++.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 35789999999999854 47788999999999999999996 9999999999999999999999999977 7899999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCC-cEEEEEEec-CCcccch
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW-GEVIAIFND-DDQGRNG 175 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W-~~v~ii~~~-~~~g~~~ 175 (549)
|.+|..+.++++++..+++|+|+++++++.+++ .++|+||+.|++..++.++++++.+.+| +++++++++ ++||...
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999888887765 4578999999999999999999877554 555555544 3477665
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
.+.+. ++.|++++....++.. ..|+..++.+++++++++|++.+...++..++++++++|+..+ |+..+.
T Consensus 161 ~~~~~---~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 230 (353)
T 4gnr_A 161 AKSFR---ESYKGEIVADETFVAG----DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDG 230 (353)
T ss_dssp HHHHH---HHCCSEEEEEEEECTT----CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGG
T ss_pred HHHHH---HHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecc
Confidence 55554 3457888888888865 6789999999999999999999999999999999999998643 555543
Q ss_pred cccccCCCCcCChhhHhhccceEEEeEec---CCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcC
Q 008904 256 LSTFIDSKSPLSLKTAKSILGALTLRQHT---PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 332 (549)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 332 (549)
+...... .........|.+....+. +..+..++|.+.|+++++ ..++.++...|||++++++|++++.
T Consensus 231 ~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~la~Ai~~a~--- 301 (353)
T 4gnr_A 231 FNGEEFV----QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN--EEPSTFAALAYDSVHLVANAAKGAK--- 301 (353)
T ss_dssp GCSHHHH----HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHTTCS---
T ss_pred cccchhh----hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHHHHHhcCC---
Confidence 3321000 001123455666555433 345778999999999997 5678899999999999999986420
Q ss_pred CCccccCCccccCCCCCccccCCccccCchHHHHHHHHhc-cccccceeeEEccCCCCCCCceEEEEEeeCceeeEEe
Q 008904 333 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIG 409 (549)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG 409 (549)
++..+.++|+++ .|+|++|+++||++|++. ..+.|++++++.+ +.+.
T Consensus 302 ----------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~-~~~~ 349 (353)
T 4gnr_A 302 ----------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKV-EAAE 349 (353)
T ss_dssp ----------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEE-EEEE
T ss_pred ----------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEE-EEEE
Confidence 367899999988 599999999999999864 5677888865433 5553
|
| >3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=303.88 Aligned_cols=344 Identities=10% Similarity=0.099 Sum_probs=284.7
Q ss_pred CCceEEEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 98 (549)
..++|+||+++|++. ..|.....++++|++++|+++|++ |+++++++.|+++++..+.+.+.+++.+ +|.+||||
T Consensus 2 t~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~ 80 (364)
T 3lop_A 2 SLADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTV 80 (364)
T ss_dssp ---CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECC
T ss_pred CCCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEec
Confidence 357899999999974 346678899999999999999996 8999999999999999999999999986 99999999
Q ss_pred CCchHHHHHHH--hhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchH
Q 008904 99 QSAVMAHVLSH--LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~--~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~ 176 (549)
.++..+.++++ ++...++|+|++.++.+.+++ ++++||+.|++..++.++++++.++||++|++|+.++++|....
T Consensus 81 ~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~ 158 (364)
T 3lop_A 81 VGTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAI 158 (364)
T ss_dssp CCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHH
T ss_pred CCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHH
Confidence 99999999999 999999999998777766655 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCc
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 256 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 256 (549)
+.+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..+ |+..+.+
T Consensus 159 ~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~ 231 (364)
T 3lop_A 159 TGVERTLKAHALAITAMASYPRN----TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSI 231 (364)
T ss_dssp HHHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTS
T ss_pred HHHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccC
Confidence 99999999999998876666644 5678889999999999999999999999999999999998643 6666544
Q ss_pred ccccCCCCcCChhhH-hhccceEEEeE----ecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhc
Q 008904 257 STFIDSKSPLSLKTA-KSILGALTLRQ----HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQ 331 (549)
Q Consensus 257 ~~~~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 331 (549)
...... .... ....|++.... .....+..++|.+.|+++++....++.++...|||+++++.|++++..
T Consensus 232 ~~~~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~a~~~yda~~~~~~al~~ag~- 305 (364)
T 3lop_A 232 DPGILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAGP- 305 (364)
T ss_dssp CHHHHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred ChHHHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhCC-
Confidence 321100 1222 45677776542 224668899999999998874336788899999999999999998621
Q ss_pred CCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhc-cccc-cceeeEEccCCCCCCCceEEEEEeeCceeeEEe
Q 008904 332 GNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTG-LSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIG 409 (549)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g-~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG 409 (549)
. . ++..|.++|+++ .|+| .+|++.|++++++......|.+++.++++..-|
T Consensus 306 --~------------------------~-~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~~~~ 358 (364)
T 3lop_A 306 --K------------------------P-TREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVIQEG 358 (364)
T ss_dssp --S------------------------C-CHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEEEC-
T ss_pred --C------------------------C-CHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcccccc
Confidence 0 1 488999999999 6999 999999999887665667777777666644444
|
| >3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=307.49 Aligned_cols=332 Identities=14% Similarity=0.100 Sum_probs=267.6
Q ss_pred CceEEEEEEeccCCC---CchHHHHHHHHHHHHHHc-CCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcC
Q 008904 24 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINS-DPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 98 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~-~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp 98 (549)
.++|+||+++|++.. .|.....++++|++++|+ .+++ .|++|+++++|+++++..+++.+++|+.+ +|.+||||
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~ 80 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 80 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 358999999999854 467889999999999998 6777 49999999999999999999999999985 99999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCC-CCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPL-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 177 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~-~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~ 177 (549)
.+|..+.+++++++.+++|+|++.++++.+++. .+||+||+.|++..++.+++.++++++| +|++|+.+++||....+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~ 159 (374)
T 3n0x_A 81 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVA 159 (374)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHH
Confidence 999999999999999999999987777777763 5899999999999999999988888998 79999999999999999
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC-----CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-----ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.+.+.+++.|++|+....++.. ..++..++.+|++++ +++|++.+..... .+.++.++++...++.++.
T Consensus 160 ~~~~~~~~~G~~vv~~~~~~~~----~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~ 233 (374)
T 3n0x_A 160 AFKEALAKTGATLATEEYVPTT----TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELST 233 (374)
T ss_dssp HHHHHHTTTTCEEEEEEEECTT----CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEE
T ss_pred HHHHHHHHcCCEEeeeecCCCC----CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeee
Confidence 9999999999999988877754 668899999999888 9999887433211 2345555555444555554
Q ss_pred eCCcccccCCCCcCChhhHhhccceEEEeEe---cCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHH
Q 008904 253 TTWLSTFIDSKSPLSLKTAKSILGALTLRQH---TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFL 329 (549)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 329 (549)
.+...... .......|+.+...+ .+..+..++|.++|+++++ ..++.++...|||++++++|++++.
T Consensus 234 ~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g--~~p~~~a~~~Yda~~~l~~Al~~ag 303 (374)
T 3n0x_A 234 GGNILPAL--------AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN--APPDFFTAGGFSAAMAVVTAVQKAK 303 (374)
T ss_dssp CCCCTTGG--------GGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhh--------hhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC--CCCChhHHHHHHHHHHHHHHHHHhC
Confidence 43221110 111334555554432 3456788999999999987 5678889999999999999999862
Q ss_pred hcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeC
Q 008904 330 DQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH 402 (549)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~ 402 (549)
. . ++..|.++|++++|+|++|+++|++++++....+.|++++..
T Consensus 304 ~----------------------------~-~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~ 347 (374)
T 3n0x_A 304 S----------------------------T-DTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVD 347 (374)
T ss_dssp S----------------------------C-CHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECC
T ss_pred C----------------------------C-CHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeC
Confidence 1 1 488999999999999999999999644345678889988743
|
| >4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=299.51 Aligned_cols=347 Identities=17% Similarity=0.165 Sum_probs=285.5
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp 98 (549)
+.++|+||+++|++.. .|.....++++|++++|. ++ +|++|++++.|+++++..+.+.+.+++. ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 4679999999999743 366789999999999974 24 5899999999999999999999999998 799999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~ 178 (549)
.+|..+.++++++...++|+|++.++++.+++. +|++||+.|++..++.++++++.++||++|++|+.++.+|....+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999988777666654 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccc
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (549)
+.+.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..++..|+.++++..
T Consensus 159 ~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~ 234 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVPLA----NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMD 234 (368)
T ss_dssp HHHHHHHTTCEEEEEEEECSS----SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTC
T ss_pred HHHHHHHcCCEEEEEEeCCCC----CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccC
Confidence 999999999999887777644 5578889999999899999998888899999999999998765577888874332
Q ss_pred ccCCCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcc
Q 008904 259 FIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (549)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 336 (549)
.... ........|++...++.+ ..+..++|.+.| ++++. ..++.++...|||++++++|++++...
T Consensus 235 ~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~-~~p~~~~~~~yda~~~~~~al~~~g~~----- 302 (368)
T 4eyg_A 235 DDLL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG-QRPGFMAVGGYDGIHLVFEALKKTGGK----- 302 (368)
T ss_dssp HHHH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS-SCCCHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC-CCCChHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 1111 011245678777665543 458899999999 77732 367888999999999999999985210
Q ss_pred ccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEc-cCCCCCCCceEEEEEe-eCcee--eEEeEee
Q 008904 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFN-QDRSLLHPSYDIINVI-EHGYP--QQIGYWS 412 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd-~~g~r~~~~~~I~~~~-~~~~~--~~VG~w~ 412 (549)
. ++..|.++|++++|+|++|++.|| ++|++ ...+.|++++ .++.| +.++.|.
T Consensus 303 ----------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~~~~~ 358 (368)
T 4eyg_A 303 ----------------------A-DGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEFAKFD 358 (368)
T ss_dssp ----------------------C-SHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred ----------------------C-CHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEeeccc
Confidence 1 488999999999999999999999 67764 5678888887 23433 4455554
Q ss_pred C
Q 008904 413 N 413 (549)
Q Consensus 413 ~ 413 (549)
+
T Consensus 359 ~ 359 (368)
T 4eyg_A 359 A 359 (368)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=292.26 Aligned_cols=343 Identities=15% Similarity=0.194 Sum_probs=274.7
Q ss_pred CCCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 008904 22 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 97 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiG 97 (549)
...++|+||+++|++.. .|.....++++|++++| |+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 23 ~a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 95 (386)
T 3sg0_A 23 AAQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIG 95 (386)
T ss_dssp --CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred cCCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEC
Confidence 45679999999999854 45677889999998873 7899999999999999999999999987 8999999
Q ss_pred CCCchHHHHHHHhhhhcCCcEEecccCCCCCC--CCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccch
Q 008904 98 PQSAVMAHVLSHLANELQVPLLSFTALDPTLS--PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 175 (549)
Q Consensus 98 p~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls--~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~ 175 (549)
|.++..+.++.+++...++|+|++.++++.++ ...++++||+.|++..++.++++++.++||++|++|+.++.+|...
T Consensus 96 ~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~ 175 (386)
T 3sg0_A 96 SSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGY 175 (386)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHH
Confidence 99999999999999999999999987776666 3468999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
.+.+++.+++.|+++.....++.. ..++...++++++.++++|++.+....+..++++++++|+..+ ++..+.
T Consensus 176 ~~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ 248 (386)
T 3sg0_A 176 YKVLAAAAPKLGFELTTHEVYARS----DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHG 248 (386)
T ss_dssp HHHHHHHHHHHTCEECCCEEECTT----CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGG
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCC----CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccc
Confidence 999999999999998866666644 4577888999999999999999988889999999999998632 555543
Q ss_pred cccccCCCCcCChhhHhhccceEEEeEe------cC-CC---hhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHH
Q 008904 256 LSTFIDSKSPLSLKTAKSILGALTLRQH------TP-DS---KRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARAL 325 (549)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al 325 (549)
+...... ........|++....+ .+ .. +..++|.+.|+++++. ..++.++...||+++++++|+
T Consensus 249 ~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda~~~~~~al 322 (386)
T 3sg0_A 249 VATEEFI-----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG-AAPTIFGVHLWDSMTLVENAI 322 (386)
T ss_dssp GCSHHHH-----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHH-----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHHHHHH
Confidence 3221000 1223456777765431 12 22 4578999999999873 256788999999999999999
Q ss_pred HHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhc-cccccceeeEEccCCCC--CCCceEEEEEeeC
Q 008904 326 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSYDIINVIEH 402 (549)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~tG~v~fd~~g~r--~~~~~~I~~~~~~ 402 (549)
+++.+.... +.+.++..+.++|+++ +|+|++|++.|++++++ ....+.|++++++
T Consensus 323 ~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G 380 (386)
T 3sg0_A 323 PAALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDG 380 (386)
T ss_dssp HHHHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETT
T ss_pred HHhhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECC
Confidence 998654310 0122478999999999 89999999999886543 2345788888754
Q ss_pred ceeeE
Q 008904 403 GYPQQ 407 (549)
Q Consensus 403 ~~~~~ 407 (549)
.+ +.
T Consensus 381 ~~-~~ 384 (386)
T 3sg0_A 381 AF-RL 384 (386)
T ss_dssp EE-EE
T ss_pred EE-Ee
Confidence 44 44
|
| >1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=279.80 Aligned_cols=348 Identities=14% Similarity=0.066 Sum_probs=274.8
Q ss_pred CCceEEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~-~~v~aiiGp 98 (549)
..++++||+++|++.. .+.....++++|++++|+++|++ |+++++++.|+++++..+.+.+.+++. ++|++|||+
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 4568999999998643 46677899999999999999996 899999999999999999999999997 799999999
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 178 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~ 178 (549)
.++..+.++.+++...++|+|++..... ...++++||+.+++..++..+++++.+.+|++|++|+.++.++....+.
T Consensus 83 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 159 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHV 159 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHH
Confidence 9988888889999999999999755321 1235789999999999999999999999999999999988888888899
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccc
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 258 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 258 (549)
+++.+++.|+++.....++.. ....++...++++++.++++|++.+....+..++++++++|+....+.++..++...
T Consensus 160 ~~~~l~~~G~~v~~~~~~~~~--~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~ 237 (385)
T 1pea_A 160 MRHLYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEA 237 (385)
T ss_dssp HHHHHHHTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHH
T ss_pred HHHHHHHcCCEEEEEEeecCC--CCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchH
Confidence 999999999998865555531 246788889999988889999998878889999999999998644444554433221
Q ss_pred ccCCCCcCChhhHhhccceEEEeEec--CCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCcc
Q 008904 259 FIDSKSPLSLKTAKSILGALTLRQHT--PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 336 (549)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 336 (549)
.+.. .......|++...++. ...+..++|.+.|+++++....++.++..+|||++++++|++++..
T Consensus 238 ~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~ag~------ 305 (385)
T 1pea_A 238 EVAK------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGN------ 305 (385)
T ss_dssp HHTT------SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTS------
T ss_pred HHHh------cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHhCC------
Confidence 1111 0113567877766543 3467889999999998874335677899999999999999998621
Q ss_pred ccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEe
Q 008904 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 411 (549)
Q Consensus 337 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w 411 (549)
. ++..|.++|++++|+|++|+++||+++++....+.|.++..++.|+.|...
T Consensus 306 ----------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 306 ----------------------W-RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp ----------------------C-CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred ----------------------C-CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 1 388999999999999999999999865444566788888433443666543
|
| >3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=223.71 Aligned_cols=313 Identities=10% Similarity=0.041 Sum_probs=230.7
Q ss_pred EEEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 27 LNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 27 i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
+|||+++|++.. .|...+.++++|++ |++++++++|+.++|..++ ...+.+++|.+||||.+|..
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~~ 70 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQN 70 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEcccccc
Confidence 689999999854 46778888888862 5678999999999987653 34455679999999999988
Q ss_pred HHHHHHhh-hhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 104 AHVLSHLA-NELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 104 ~~~va~~~-~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
+.+++... ....+|+++.++++.. ...+++||+.+++..++.++++++...+++++++++.+++||....+.|++.
T Consensus 71 ~~a~~~~~~~~~~v~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~ 147 (327)
T 3ckm_A 71 LDVILADPAQIQGMDVLALNATPNS---RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVR 147 (327)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCTTC---CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHH
T ss_pred chhhHHHHHhccCceEeccCcCccc---ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHH
Confidence 87766654 5556676664433322 2347899999999999999999999999999999999999999999999999
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDS 262 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 262 (549)
+++.|++|+....++.. +....+.+++..++++|++.....++..++++++++|+. ..++.++.+......
T Consensus 148 ~~~~Gg~vv~~~~~~~~------~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~---~~~~~~~~~~~~~~~ 218 (327)
T 3ckm_A 148 WQQLAGTDANIRYYNLP------ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPN---LAIYASSRASASATN 218 (327)
T ss_dssp HHHHHSSCCEEEEESST------THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTT---CEEEECGGGCCHHHH
T ss_pred HHHCCCeEEEEEECCCC------chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhcc---CCEEeeeccccccch
Confidence 99999999888877644 233456778889999999999999999999999988754 346665543322111
Q ss_pred CCcCChhhHhhccceEEEeE---ecCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 263 KSPLSLKTAKSILGALTLRQ---HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.. ........|++.... ..+..+.++.|.++|+..++ ...+.++.|||+.+++++.+..
T Consensus 219 ~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~AlgyDA~~l~~~l~~~~----------- 280 (327)
T 3ckm_A 219 TN---TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----LMRLYAMGADAWLLINQFNELR----------- 280 (327)
T ss_dssp TC---HHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----HHHHHHHHHHHHHHHHTHHHHH-----------
T ss_pred hc---chhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----CCchHHHHHHHHHHHHHHHHhc-----------
Confidence 00 122234556655433 24556788889888876653 2235678999998876543321
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEEeEe
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 411 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~VG~w 411 (549)
.+....|.|+||.++||++|+ ....+.+.+++++.+ ++|...
T Consensus 281 ----------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~-vpv~d~ 322 (327)
T 3ckm_A 281 ----------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAI-VPVVDH 322 (327)
T ss_dssp ----------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEE-EECC--
T ss_pred ----------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEE-EEcccc
Confidence 122346999999999999997 456777888876554 777643
|
| >1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-11 Score=115.02 Aligned_cols=82 Identities=13% Similarity=0.330 Sum_probs=64.6
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC------CC----CChHHHHHhHhc
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KN----PTYSELINQITT 531 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~------~~----g~~~gl~~~l~~ 531 (549)
++++|++.. .|+|+.... .+++++|||+||+++|++.+||+ |+++.++||+ .+ ++|++++++|.+
T Consensus 41 ~~l~vg~~~--~~~P~~~~~-~~g~~~G~~vDll~~ia~~lg~~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~ 115 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHT-VPQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLS 115 (292)
T ss_dssp CEEEEEEC----------CE-EEEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHH
T ss_pred ceeecccCC--CCCCccccc-cccCcceeHHHHHHHHHHHcCce--EEEEEecCCcccccccccccccCcHHHHHHHHHc
Confidence 567776543 344443332 36789999999999999999999 9999999987 22 489999999999
Q ss_pred CcccEEecceEEeeccc
Q 008904 532 GVSRILTKKVAQLTRVS 548 (549)
Q Consensus 532 ~~~d~~~~~~ti~~~r~ 548 (549)
|++|++++++++|++|+
T Consensus 116 g~~D~~~~~~~~t~~R~ 132 (292)
T 1pb7_A 116 GQADMIVAPLTINNERA 132 (292)
T ss_dssp TSCSEECSSCBCCHHHH
T ss_pred CCcCEEEeeeEecHHHh
Confidence 99999999999999996
|
| >2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-11 Score=114.68 Aligned_cols=61 Identities=23% Similarity=0.465 Sum_probs=57.6
Q ss_pred eeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC----CCCChHHHHHhHhcCcccEEecceEEeeccc
Q 008904 486 IVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----KNPTYSELINQITTGVSRILTKKVAQLTRVS 548 (549)
Q Consensus 486 ~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~----~~g~~~gl~~~l~~~~~d~~~~~~ti~~~r~ 548 (549)
+++|||+||+++|++.+||+ |+++.++||+ .+++|++++++|.+|++|++++++++|++|+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~ 131 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARS 131 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHH
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHh
Confidence 58999999999999999999 9999999987 5679999999999999999999999999996
|
| >2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=109.55 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCCeEEEeecCcccccccEEee---cCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC----CCCChHHHHHhHhcC
Q 008904 460 NGRQLRIGVPNRVSYRDFVFKV---NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----KNPTYSELINQITTG 532 (549)
Q Consensus 460 ~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~----~~g~~~gl~~~l~~~ 532 (549)
.+++|||+++...+|++|.... ...+++.|||+||++++++.||++ |+++.++||+ .+++|++++.+|.+|
T Consensus 27 ~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~g 104 (284)
T 2a5s_A 27 TETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVVYQ 104 (284)
T ss_dssp -CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHHTT
T ss_pred CCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHHHHhcC
Confidence 4688888888766666552211 113478999999999999999999 9999999876 467999999999999
Q ss_pred cccEEecceEEeeccc
Q 008904 533 VSRILTKKVAQLTRVS 548 (549)
Q Consensus 533 ~~d~~~~~~ti~~~r~ 548 (549)
++|++++++++|++|+
T Consensus 105 ~~D~~~~~~~~t~~R~ 120 (284)
T 2a5s_A 105 RAVMAVGSLTINEERS 120 (284)
T ss_dssp SCSEECSSCBCCHHHH
T ss_pred CcCEEEEEEEEecccc
Confidence 9999999999999996
|
| >4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.2e-10 Score=103.52 Aligned_cols=76 Identities=16% Similarity=0.356 Sum_probs=68.2
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC-CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l-~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
.++|+|++.. .|+||.+.+ .++++.||++||+++++++| |++ ++++.. .|++++..|.+|++|++++
T Consensus 8 ~~tl~vg~~~--~~pP~~~~d-~~G~~~G~~vdl~~~ia~~l~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 75 (243)
T 4gvo_A 8 VQTITVGTGT--QFPNVCFLD-ENGKLTGYDVELVKEIDKRLPGYK--FKFKTM-------DFSNLLVSLGAGKVDIVAH 75 (243)
T ss_dssp CEEEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHTCTTEE--EEEEEC-------CGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEECC--CCCCeEEEC-CCCcEEEhHHHHHHHHHHhccCCe--EEEEEC-------CHHHHHHHHHCCCCCEecc
Confidence 4789999854 678887765 46789999999999999998 899 999999 9999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
++++|++|+
T Consensus 76 ~~~~t~eR~ 84 (243)
T 4gvo_A 76 QMEKSKERE 84 (243)
T ss_dssp CCBCCHHHH
T ss_pred cCCCCHHHh
Confidence 999999996
|
| >3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-09 Score=101.83 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=70.6
Q ss_pred CCeEEEeecCcccccccEEeecC------cceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC---C---CCChHHHHHh
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH---K---NPTYSELINQ 528 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~------~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~---~---~g~~~gl~~~ 528 (549)
+++|+|++... +||.+.... ++++.||++||++++++.+|++ ++++.+++++ . +++|++++..
T Consensus 3 ~~~l~v~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~p~~~~g~~~~~~~~~~~~~~~ 77 (259)
T 3g3k_A 3 NRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFT--YEIRLVEDGKYGAQDDVNGQWNGMVRE 77 (259)
T ss_dssp CCCEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHH
T ss_pred CcEEEEEEecC---CCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCe--EEEEECCCCCcCcccCCCCcchHHHHH
Confidence 47899998754 355444432 5889999999999999999999 9999998866 1 4689999999
Q ss_pred HhcCcccEEecceEEeeccc
Q 008904 529 ITTGVSRILTKKVAQLTRVS 548 (549)
Q Consensus 529 l~~~~~d~~~~~~ti~~~r~ 548 (549)
|.+|++|++++++++|++|+
T Consensus 78 l~~g~~D~~~~~~~~t~eR~ 97 (259)
T 3g3k_A 78 LIDHKADLAVAPLAITYVRE 97 (259)
T ss_dssp HHTTSCSEECSSCBCCHHHH
T ss_pred HhcCcccEEEeeeEeccccc
Confidence 99999999999999999996
|
| >4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-09 Score=99.66 Aligned_cols=77 Identities=18% Similarity=0.335 Sum_probs=68.6
Q ss_pred CCeEEEeecCcccccccEEe--ecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEe
Q 008904 461 GRQLRIGVPNRVSYRDFVFK--VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILT 538 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~--~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~ 538 (549)
.++|+|++.. .|+||.+. ..+++.+.||++||++++++.+|++ ++++.. .|++++..|.+|++|+++
T Consensus 11 ~g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~g~~d~~~ 79 (243)
T 4h5g_A 11 KGKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVK--LEILSM-------SFDNVLTSLQTGKADLAV 79 (243)
T ss_dssp HTEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSE--EEEEEC-------CGGGHHHHHHTTSCSEEC
T ss_pred CCEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCc--eEEecc-------cHHHHHHHHHcCCCCccc
Confidence 4679999854 67787664 3467889999999999999999999 999999 999999999999999999
Q ss_pred cceEEeeccc
Q 008904 539 KKVAQLTRVS 548 (549)
Q Consensus 539 ~~~ti~~~r~ 548 (549)
+++++|++|+
T Consensus 80 ~~~~~t~eR~ 89 (243)
T 4h5g_A 80 AGISATDERK 89 (243)
T ss_dssp SSCBCCHHHH
T ss_pred ccccCChhHc
Confidence 9999999996
|
| >2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.9e-09 Score=98.17 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=69.5
Q ss_pred CCeEEEeecCcccccccEEeecC----cceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC-----CCCChHHHHHhHhc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNG----TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH-----KNPTYSELINQITT 531 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~----~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~-----~~g~~~gl~~~l~~ 531 (549)
+++|+|++... +||.+.... .+++.||++||++++++.+|++ ++++.+++++ .+++|++++..|.+
T Consensus 2 ~~~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 76 (265)
T 2v3u_A 2 GVVLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLVGELVF 76 (265)
T ss_dssp CCEEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHHHHHHT
T ss_pred CeEEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCcchHHHHHHc
Confidence 47899998654 455554331 1689999999999999999999 9999988765 24689999999999
Q ss_pred CcccEEecceEEeeccc
Q 008904 532 GVSRILTKKVAQLTRVS 548 (549)
Q Consensus 532 ~~~d~~~~~~ti~~~r~ 548 (549)
|++|++++++++|++|+
T Consensus 77 g~~D~~~~~~~~t~~R~ 93 (265)
T 2v3u_A 77 KRADIGISALTITPDRE 93 (265)
T ss_dssp TSCSEECSSCBCCHHHH
T ss_pred CCcCeEEeeeEeehhhh
Confidence 99999999999999996
|
| >1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.5e-09 Score=101.15 Aligned_cols=84 Identities=19% Similarity=0.363 Sum_probs=70.5
Q ss_pred CCCeEEEeecCcccccccEEeec------CcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC-----C-CCChHHHHH
Q 008904 460 NGRQLRIGVPNRVSYRDFVFKVN------GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH-----K-NPTYSELIN 527 (549)
Q Consensus 460 ~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~-----~-~g~~~gl~~ 527 (549)
..++|+|++... +||..... +++++.||++||++++++.+|++ |+++.++|++ . +++|++++.
T Consensus 11 ~~~~l~V~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 85 (312)
T 1yae_A 11 SNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKYGAQDDVNGQWNGMVR 85 (312)
T ss_dssp CSCEEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCE--EEEEECSSCCCCCBCTTTCCBCSHHH
T ss_pred cCceEEEEEecc---CCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCe--EEEEecCCCccceeccCCCcchHHHH
Confidence 357899998653 45554431 46789999999999999999999 9999888765 1 579999999
Q ss_pred hHhcCcccEEecceEEeeccc
Q 008904 528 QITTGVSRILTKKVAQLTRVS 548 (549)
Q Consensus 528 ~l~~~~~d~~~~~~ti~~~r~ 548 (549)
.|.+|++|++++++++|++|+
T Consensus 86 ~l~~g~~D~~~~~~~~t~eR~ 106 (312)
T 1yae_A 86 ELIDHKADLAVAPLAITYVRE 106 (312)
T ss_dssp HHHTTSCSEECSSCBCCHHHH
T ss_pred HHhCCCcCEEeecceechhhc
Confidence 999999999999999999995
|
| >1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... | Back alignment and structure |
|---|
Probab=98.74 E-value=9.9e-09 Score=96.01 Aligned_cols=83 Identities=14% Similarity=0.324 Sum_probs=69.1
Q ss_pred CCeEEEeecCcccccccEEeecC------cceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC-----CCC-ChHHHHHh
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH-----KNP-TYSELINQ 528 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~------~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~-----~~g-~~~gl~~~ 528 (549)
+++|+|++.. |+||.+.... ++.+.||++||++++++.+|++ ++++..+++. .++ .|++++..
T Consensus 3 ~~~l~v~~~~---~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (263)
T 1mqi_A 3 NKTVVVTTIL---ESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGE 77 (263)
T ss_dssp CCCEEEEECC---BTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHH
T ss_pred CeEEEEEEec---CCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCce--EEEEEccccccCccCCCCCCcHHHHHH
Confidence 4678998854 5666665432 4789999999999999999999 9999987644 233 89999999
Q ss_pred HhcCcccEEecceEEeeccc
Q 008904 529 ITTGVSRILTKKVAQLTRVS 548 (549)
Q Consensus 529 l~~~~~d~~~~~~ti~~~r~ 548 (549)
|.+|++|++++++++|++|+
T Consensus 78 l~~g~~D~~~~~~~~t~~R~ 97 (263)
T 1mqi_A 78 LVYGKADIAIAPLTITLVRE 97 (263)
T ss_dssp HHTTSCSEECSSCBCCHHHH
T ss_pred HHcCCcCEEEEeeEecHHHH
Confidence 99999999999999999996
|
| >3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-08 Score=92.79 Aligned_cols=76 Identities=11% Similarity=0.225 Sum_probs=66.3
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.+.. .++.+.||++||++++++.+|++ ++++.. +|+.++..|.+|++|+++++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFIN-DAGEVDGFERELGDELCKRAGLT--CEWVKN-------DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHTCC--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEECC--CCCCeeEEC-CCCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCCCEEEeC
Confidence 4679999863 677887654 36789999999999999999999 999999 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 72 ~~~t~~r~ 79 (232)
T 3i6v_A 72 MSITDERD 79 (232)
T ss_dssp CBCCHHHH
T ss_pred CcCCHHHH
Confidence 99999986
|
| >3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.9e-08 Score=88.68 Aligned_cols=76 Identities=13% Similarity=0.247 Sum_probs=67.3
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||..... ++...||++||++++++.+|++ ++++.. +|+.++..|.+|++|+++++
T Consensus 14 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 14 SGVLRVATTG--DYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAK--LVVVPT-------SWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HTEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHTTCE--EEEEEC-------CTTTHHHHHHTTCCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEEeehHHHHHHHHHHHCCc--eEEEEe-------CHHHHHHHHHCCCcCEEEeC
Confidence 4789999853 5677776543 6789999999999999999999 999999 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 82 ~~~t~~r~ 89 (239)
T 3kbr_A 82 ISINLERQ 89 (239)
T ss_dssp CBCCHHHH
T ss_pred CcCCHHHc
Confidence 99999986
|
| >3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.6e-08 Score=87.63 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=66.9
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++|+|++.. .|+||......++.+.||++||++++++.+|++ ++++.. +|+.++..|.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 71 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGNNSSLYGFDIDLMQEICRRLHAT--CTFEAY-------IFDDLFPALKNREVDLVIASM 71 (237)
T ss_dssp CEEEEEEES--EETTTEECCCTTSCCBSHHHHHHHHHHHHTTCE--EEEEEE-------CGGGHHHHHHTTSSSEECSSC
T ss_pred ceEEEEECC--CCCCeEEEeCCCCCEeeehHHHHHHHHHHhCCc--eEEEEc-------CHHHHHHHHhCCCCCEEEEcc
Confidence 678998863 577887651246789999999999999999999 999999 899999999999999999999
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
++|++|+
T Consensus 72 ~~~~~r~ 78 (237)
T 3kzg_A 72 IITDERK 78 (237)
T ss_dssp BCCTTGG
T ss_pred ccChhHh
Confidence 9999986
|
| >3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-07 Score=87.29 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=67.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... .++.+.||++||++++++.+|++ ++++.. +|..++..|.+|++|+++++
T Consensus 4 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLEP--GYLPFEMKD-KKGNVIGFDVDLAREMAKAMGVK--LKLVPT-------SWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEECT--TSTTTCEEE-TTTEEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEECC--CcCCeeEEC-CCCCCccchHHHHHHHHHHhCCe--EEEEEc-------cHHHHHHHHhCCCcCEEEec
Confidence 4789999863 567776654 36789999999999999999999 999999 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 72 ~~~t~~r~ 79 (245)
T 3k4u_A 72 MTISQERN 79 (245)
T ss_dssp CBCCHHHH
T ss_pred CcCCHHHH
Confidence 99999985
|
| >3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-07 Score=84.63 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=64.7
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++|+|++.. .|+||.... .++...||++|+++++++.+|++ ++++.. +|..++..|.+|++|++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMG-PSGQVEGFGADIVKAVCKQMQAV--CTISNQ-------PWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCE--EEEEEC-------CHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEcC--CCCCeeEEC-CCCCcccchHHHHHHHHHHhCCe--EEEEeC-------CHHHHHHHHhCCCCCEEEecC
Confidence 578888854 567776643 36779999999999999999999 999998 999999999999999999999
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
+.|++|+
T Consensus 70 ~~~~~r~ 76 (227)
T 3tql_A 70 NITTARQ 76 (227)
T ss_dssp BCCTTGG
T ss_pred cCCHhHH
Confidence 9999986
|
| >1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-07 Score=85.84 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=65.8
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... .++.+.||++||++++++.+|++ ++++.. +|+.++..|.+|++|+++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKD-AKGEFIGFDIDLGNEMCKRMQVK--CTWVAS-------DFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEECS--CBTTTBEEC-TTCCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEECC--CcCCeeEEC-CCCCEeeEHHHHHHHHHHHHCCe--EEEEeC-------CHHHHHHHHhCCCCCEEEEC
Confidence 4678998842 567776654 35789999999999999999999 999998 99999999999999999998
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 71 ~~~t~~r~ 78 (239)
T 1lst_A 71 LSITDKRQ 78 (239)
T ss_dssp CBCCHHHH
T ss_pred cCcCHHHh
Confidence 99999885
|
| >3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-07 Score=85.92 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=66.2
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||..... ++.+.||++||++++++.+|++ ++++.. .|+.++..|.+|++|+++++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 77 (242)
T 3del_B 10 SEKFIVGTNA--TYPPFEFVDK-RGEVVGFDIDLAREISNKLGKT--LDVREF-------SFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp -CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSSSEECSS
T ss_pred CCcEEEEeCC--CCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCc--eEEEEc-------CHHHHHHHHhCCCcCEEEec
Confidence 4789999843 5677766543 6789999999999999999999 999999 89999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 78 ~~~~~~r~ 85 (242)
T 3del_B 78 MSITPSRL 85 (242)
T ss_dssp BBCCHHHH
T ss_pred CcCCHHHH
Confidence 99999885
|
| >3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-07 Score=87.20 Aligned_cols=76 Identities=11% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.+.. .++.+.||++||++++++.+|++ ++++.. .|+.++..|.+|++|+++++
T Consensus 20 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 87 (268)
T 3hv1_A 20 EKKIKIGFDA--TFVPMGYEE-KDGSYIGFDIDLANAVFKLYGID--VEWQAI-------DWDMKETELKNGTIDLIWNG 87 (268)
T ss_dssp HTEEEEEECT--EETTTEEEC-TTSCEECHHHHHHHHHHHTTTCE--EEEEEC-------CGGGHHHHHHHTSCSEECSS
T ss_pred CCcEEEEECC--CCCCceEEC-CCCCEEEehHHHHHHHHHHhCCc--EEEEEC-------CHHHHHHHHHCCCCCEEEec
Confidence 4789999864 677887654 36789999999999999999999 999999 89999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 88 ~~~t~~r~ 95 (268)
T 3hv1_A 88 YSVTDERK 95 (268)
T ss_dssp CBCCHHHH
T ss_pred CccCHHHH
Confidence 99999985
|
| >2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.4e-07 Score=86.94 Aligned_cols=77 Identities=10% Similarity=0.209 Sum_probs=66.6
Q ss_pred CCeEEEeecCcccccccEEeecCc--ceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEe
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGT--DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILT 538 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~ 538 (549)
.++|+|++.. .|+||.....++ +.+.||++|+++++++.+|++ ++++.. +|+.++..|.+|++|+++
T Consensus 20 ~~~l~v~~~~--~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~ 88 (271)
T 2iee_A 20 KGKIVVATSG--TLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLK--VEFKEM-------GIDGMLTAVNSGQVDAAA 88 (271)
T ss_dssp HTEEEEEECS--CBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCE--EEEEEC-------CSTTHHHHHHHTSSSEEC
T ss_pred CCeEEEEECC--CCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCe--EEEEEC-------CHHHHHHHHHCCCcCEEE
Confidence 4679999853 567776654321 789999999999999999999 999999 999999999999999999
Q ss_pred cceEEeeccc
Q 008904 539 KKVAQLTRVS 548 (549)
Q Consensus 539 ~~~ti~~~r~ 548 (549)
+++++|++|+
T Consensus 89 ~~~~~t~~r~ 98 (271)
T 2iee_A 89 NDIDVTKDRE 98 (271)
T ss_dssp SSCBCCHHHH
T ss_pred eCCcCChhhc
Confidence 9999999985
|
| >4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.4e-07 Score=85.68 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=65.8
Q ss_pred CCCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 460 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 460 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
..++|+|++.. .|+||... .++...||++||++++++.+|++ ++++.. +|..++..|.+|++|++++
T Consensus 22 ~~~~l~v~~~~--~~~P~~~~--~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 88 (249)
T 4f3p_A 22 MAKELVVGTDT--SFMPFEFK--QGDKYVGFDLDLWAEIAKGAGWT--YKIQPM-------DFAGLIPALQTQNIDVALS 88 (249)
T ss_dssp --CCEEEEEES--CBTTTBEE--ETTEEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSCSEEEE
T ss_pred cCceEEEEeCC--CCCCeEEe--cCCeEEEEhHHHHHHHHHHcCCc--eEEEec-------CHHHHHHHHHCCCCCEEEe
Confidence 35789999863 56777665 46789999999999999999999 999999 9999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
+++.|++|+
T Consensus 89 ~~~~~~~r~ 97 (249)
T 4f3p_A 89 GMTIKEERR 97 (249)
T ss_dssp EEECCHHHH
T ss_pred ccccCHHHH
Confidence 999999885
|
| >4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.4e-07 Score=85.27 Aligned_cols=76 Identities=13% Similarity=0.322 Sum_probs=66.8
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++++|++.. .|+||.... .++.+.||++|+++++++.+|++ ++++.. +|+.++..|.+|++|+++++
T Consensus 28 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 95 (259)
T 4dz1_A 28 GRTLNVAVSP--ASPPMLFKS-ADGKLQGIDLELFSSYCQSRHCK--LNITEY-------AWDGMLGAVASGQADVAFSG 95 (259)
T ss_dssp TCEEEEEECC--CBTTTBEEC-TTCCEESHHHHHHHHHHHHHTCE--EEEEEC-------CHHHHHHHHHHTSSSEEEEE
T ss_pred CCeEEEEECC--CCCCeEEEC-CCCCEEEeHHHHHHHHHHHhCCe--EEEEEc-------CHHHHHHHHhCCCCCEEEEC
Confidence 4789998853 567776654 46789999999999999999999 999999 99999999999999999999
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
+++|++|+
T Consensus 96 ~~~t~~r~ 103 (259)
T 4dz1_A 96 ISITDKRK 103 (259)
T ss_dssp EECCHHHH
T ss_pred CcCCHHHh
Confidence 99999986
|
| >3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-05 Score=75.57 Aligned_cols=213 Identities=9% Similarity=-0.007 Sum_probs=127.7
Q ss_pred CCCceEEEEEEecc---CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcC
Q 008904 22 LKPEVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGP 98 (549)
Q Consensus 22 ~~~~~i~IG~l~~~---~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp 98 (549)
......+||+++|. +..+......+++.+.++ .|+++ .+.+...++....+....++.+++++||..
T Consensus 15 ~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~--------~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgii~~ 84 (296)
T 3brq_A 15 SAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEE--------KGRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIY 84 (296)
T ss_dssp ----CCEEEEEECGGGCC--CHHHHHHHHHHHHHH--------TTCEE--EEECCTTSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred hcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHH--------CCCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 34567899999986 344444556666666655 25554 445666677666666777778899988864
Q ss_pred CCchHHHHHHHhhhh-cCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccch
Q 008904 99 QSAVMAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNG 175 (549)
Q Consensus 99 ~~s~~~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~ 175 (549)
........+. .+.. .++|+|.+....+ + +.+..+.++....+..+++.|...|.+++++|..+.. .+...
T Consensus 85 ~~~~~~~~~~-~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R 157 (296)
T 3brq_A 85 PRFLSVDEID-DIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIER 157 (296)
T ss_dssp CSSSCHHHHH-HHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHH
T ss_pred cCCCChHHHH-HHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHH
Confidence 3322223333 3445 7999998753221 1 2233455667777788888888889999999986532 34456
Q ss_pred HHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEE
Q 008904 176 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIA 252 (549)
Q Consensus 176 ~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~ 252 (549)
.+.|.+.+++.|+.+.....+... ....+....++++.+. .++.|+. .+...+..+++++++.|+..++ ...++
T Consensus 158 ~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg 234 (296)
T 3brq_A 158 LAGYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIG 234 (296)
T ss_dssp HHHHHHHHHTTTCCCCGGGEECCC--SSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEE
T ss_pred HHHHHHHHHHcCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 677888888888765322111211 1233334455555433 4566554 4555677888999999986543 33444
Q ss_pred eC
Q 008904 253 TT 254 (549)
Q Consensus 253 ~~ 254 (549)
.+
T Consensus 235 ~d 236 (296)
T 3brq_A 235 FD 236 (296)
T ss_dssp ES
T ss_pred ec
Confidence 43
|
| >4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-07 Score=86.30 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=66.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCC-CCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLP-YAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~-~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
.++|+|++.. .|+||... .++...||++||++++++.+| ++ ++++.. +|+.++..|.+|++|++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~~--~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIYE--ENGELTGYEIEVVRAIFKDSDKYD--VKFEKT-------EWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEECC--CSTTTSEE--ETTEEESHHHHHHHHHHTTCSSEE--EEEEEC-------CHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeCC--CcCCeEEc--CCCCCcccHHHHHHHHHHHcCCce--EEEEeC-------CHHHHHHHHhCCCcCEEec
Confidence 4779999864 56677663 467899999999999999999 99 999999 9999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
++++|++|+
T Consensus 74 ~~~~~~~r~ 82 (246)
T 4eq9_A 74 NLSYTKERA 82 (246)
T ss_dssp SCCCCHHHH
T ss_pred ccccChhhh
Confidence 999999885
|
| >3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.5e-05 Score=73.06 Aligned_cols=209 Identities=10% Similarity=-0.030 Sum_probs=132.4
Q ss_pred EEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEcCC-CchH
Q 008904 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD-TLAIVGPQ-SAVM 103 (549)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~-v~aiiGp~-~s~~ 103 (549)
++||+++|.. ..+......+++.+.++. |+++.+...++..++....+....++.++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 5899999864 333344556666666652 56666655446667777777788888888 99998644 3334
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc----CCcEEEEEEecC--CcccchHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF----GWGEVIAIFNDD--DQGRNGVT 177 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~----~W~~v~ii~~~~--~~g~~~~~ 177 (549)
.......+...++|+|.+....+ +. +....+.+.....++.+++.+... |-++++++.... .......+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLA---GD--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCC---CC--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 44455566778999999754322 11 223345567777888899888887 899999997543 23445677
Q ss_pred HHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 178 ALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 178 ~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+.+.+++. |+.+.... ... .........++++.+. .++.|+ +.+...+..+++++++.|+ ..+...++.+
T Consensus 148 gf~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAAP--YAG--DDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHTTCTTEEEEECC--BCC--SSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHhCCCcEEEEEe--cCC--CcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 888888888 88766322 111 2233444455554433 344443 3455567778999999997 3444444444
|
| >2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=5e-05 Score=72.60 Aligned_cols=208 Identities=12% Similarity=0.044 Sum_probs=128.0
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
++||++.|....+......+++.+.++. |+++.+.. .+..++....+....++.+++++||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 6899999875323334456666666552 45555432 13457777677777888889998885 44443323
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecC--CcccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD--DQGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~--~~g~~~~~~l~~ 181 (549)
.....+...++|+|.+....+ + .+.+..+.++....++.+++.|... |-++|++|.... .......+.|.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSP---D--SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCT---T--SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCC---C--cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 334445568999998754322 1 1223345567777788888888877 899999998642 234456677888
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+++.|+.+....... .+..+....++++.+. .++.|+. .+...+..+++++++.|.. .+...++.+
T Consensus 148 ~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~p-~dv~vvg~d 216 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE----EDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGKV-GKVKIVCFD 216 (313)
T ss_dssp HHTTSSCEEEEEEECS----SCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTCT-TTSEEEEEC
T ss_pred HhcCCCCEEEEeecCC----CCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCCC-CCeEEEEeC
Confidence 8888898775432211 1233444455555433 3455554 4445677788999998843 344444444
|
| >1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5.7e-07 Score=81.47 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=63.7
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++|+|++.. .|+||.... ++.+.||++|+++++++.+|++ ++++.. .|+.++..|.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLD--YELKPM-------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEES--SBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEECC--CCCCeeEec--CCcEEEeeHHHHHHHHHHhCCE--EEEEEC-------CHHHHHHHHhCCCCCEEEEcC
Confidence 568888753 566776654 3689999999999999999999 999988 899999999999999999989
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
++|++|+
T Consensus 70 ~~~~~r~ 76 (226)
T 1wdn_A 70 TITDERK 76 (226)
T ss_dssp ECCHHHH
T ss_pred cCCHHHh
Confidence 9998885
|
| >2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.4e-07 Score=80.63 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... .++++.||++|+++++++.+|++ ++++.. +|+.++..|.+|++|+++++
T Consensus 5 a~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 5 ARTLHFGTSA--TYAPYEFVD-ADNKIVGFDIDVANAVCKEMQAE--CSFTNQ-------SFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp CCEEEEEECC--CBTTTBEEC-TTSCEESHHHHHHHHHHHHTTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSS
T ss_pred CCcEEEEeCC--CcCCceEEC-CCCCCcceeHHHHHHHHHHhCCe--EEEEEc-------CHHHHHHHHhCCCceEEEec
Confidence 4779999852 567776543 35789999999999999999999 999998 99999999999999999988
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 73 ~~~~~~r~ 80 (229)
T 2y7i_A 73 MDMTPKRE 80 (229)
T ss_dssp CBCCHHHH
T ss_pred CccCHHHh
Confidence 99998885
|
| >1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A | Back alignment and structure |
|---|
Probab=98.27 E-value=9.8e-07 Score=80.38 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=62.8
Q ss_pred CCeEEEeecCcccccccEEee-cCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 461 GRQLRIGVPNRVSYRDFVFKV-NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~-~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
.++|+|++.. |+||.... ..++.+.||++|+++++++.+|++ ++++.. +.|+.++..|.+|++|++++
T Consensus 3 ~~~l~v~~~~---~~P~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~~ 71 (233)
T 1ii5_A 3 AMALKVGVVG---NPPFVFYGEGKNAAFTGISLDVWRAVAESQKWN--SEYVRQ------NSISAGITAVAEGELDILIG 71 (233)
T ss_dssp SCCEEEEECC---CTTTCEEC-----CEESHHHHHHHHHHHHHTCC--EEEEEC------SCHHHHHHHHHTTSCSEEEE
T ss_pred CceEEEEecC---CCCeEEEecCCCCCEEEEeHHHHHHHHHHcCCc--EEEEEe------CCHHHHHHHHHCCCcCEEEe
Confidence 3678998853 56676541 246789999999999999999999 999877 47999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
++++|.+|+
T Consensus 72 ~~~~~~~r~ 80 (233)
T 1ii5_A 72 PISVTPERA 80 (233)
T ss_dssp EEECCHHHH
T ss_pred eeecCcccc
Confidence 999998884
|
| >1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.8e-05 Score=70.69 Aligned_cols=205 Identities=11% Similarity=0.002 Sum_probs=122.2
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
....+||+++|.. ..+......+++.+.++. |+.+.+ .++..++....+....++.+++++||......
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 74 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 74 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 4567899999863 333334556666666552 455544 45556776666666777788999888532221
Q ss_pred HHHHHHHhhhh-cCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC--CcccchHHHH
Q 008904 103 MAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~~-~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~--~~g~~~~~~l 179 (549)
.. .+...+.. .++|+|......+ +. ++...+.++....+..+++.|...|-++|++|..+. .......+.+
T Consensus 75 ~~-~~~~~l~~~~~iPvV~~~~~~~---~~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~ 148 (289)
T 1dbq_A 75 PE-PLLAMLEEYRHIPMVVMDWGEA---KA--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 148 (289)
T ss_dssp CH-HHHHHHHHTTTSCEEEEECSSC---CS--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHH
T ss_pred CH-HHHHHHHhccCCCEEEEccCCC---cc--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHH
Confidence 11 22333333 7999998754322 11 223345566777788888998888999999997542 3456677888
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
.+.+++.|+.+.....+... ....+....++++.+. .++.|+. .+...+..+++++++.|+..++
T Consensus 149 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~ 215 (289)
T 1dbq_A 149 MKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQ 215 (289)
T ss_dssp HHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHCCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 99999888764322112111 1233334455555443 4565554 4556677889999999986444
|
| >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=82.17 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=65.0
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... .++++.||++||++++++.+|++ ++++.. .+|+.++..|.+|++|++. +
T Consensus 31 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~------~~~~~~~~~l~~G~~D~~~-~ 98 (267)
T 3mpk_A 31 HPVVKVAVLN--LFAPFTLFR-TDEQFGGISAAVLQLLQLRTGLD--FEIIGV------DTVEELIAKLRSGEADMAG-A 98 (267)
T ss_dssp CSEEEEEEET--EETTTEECC-TTCCCBSHHHHHHHHHHHHHCCE--EEEEEE------SSHHHHHHHHHHTSCSEEE-E
T ss_pred CCcEEEEeCC--CCCCeEEEC-CCCcEeeeHHHHHHHHHHHHCCe--EEEEec------CCHHHHHHHHHCCCccEEe-c
Confidence 5789999854 577887654 36789999999999999999999 999865 2699999999999999976 8
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 99 ~~~t~~r~ 106 (267)
T 3mpk_A 99 LFVNSARE 106 (267)
T ss_dssp EECCGGGT
T ss_pred ccCChhhh
Confidence 99999986
|
| >3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00018 Score=68.23 Aligned_cols=210 Identities=10% Similarity=-0.048 Sum_probs=125.0
Q ss_pred ceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCch
Q 008904 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 102 (549)
+..+||++.|.. ..+......+++.+.++. |+++.+ +.++..++....+....++.+++++||- |..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 468899999864 333334556666666652 444432 2335567777677777788889998774 54444
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-cCCc-EEEEEEecC--CcccchHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWG-EVIAIFNDD--DQGRNGVTA 178 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~~W~-~v~ii~~~~--~~g~~~~~~ 178 (549)
........+...++|+|.+.... ... +.+..+.......+..+++.+.. .|-+ +++++.... .......+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 43344455667899999875431 111 33445667777778888888877 8887 998887432 223445667
Q ss_pred HHHHHhhcC--eEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 179 LGDKLAEIR--CKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 179 l~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
+.+.+++.+ +++... .+... ....+....++++.+.. ++.|+ +.+...+..+++++++.|+. .+...++.
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~dv~vig~ 222 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVA--ESVDDSRRTTLDLMKTYPDLKAVV-SFGSNGPIGAGRAVKEKRAK-NKVAVYGM 222 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSTTHHHHHHHHHHHTTCT-TTCEEEEC
T ss_pred HHHHHHhhCCCCEEEEe-ecCCC--CCHHHHHHHHHHHHHhCCCCCEEE-EeCCcchhHHHHHHHhcCCC-CCeEEEEe
Confidence 778887654 443321 11211 22334445556554433 34443 34445677788999999876 44444444
|
| >3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0001 Score=69.42 Aligned_cols=211 Identities=9% Similarity=-0.053 Sum_probs=126.9
Q ss_pred ceEEEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 25 EVLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 25 ~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
+..+||+++|.. ..+......+++.+.++. |+++.+...++..++....+....++.+++++||.....
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 456899999863 233334456666665553 456655443335666666667777788899998864333
Q ss_pred -hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-C-CcEEEEEEecCC--cccchH
Q 008904 102 -VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD--QGRNGV 176 (549)
Q Consensus 102 -~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-~-W~~v~ii~~~~~--~g~~~~ 176 (549)
.........+...++|+|.+....+ + .+.+..+.+.....++.+++.|... | -++++++..... ......
T Consensus 76 ~~~~~~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~ 150 (289)
T 3brs_A 76 YEKTYDAAKEIKDAGIKLIVIDSGMK---Q--DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDRE 150 (289)
T ss_dssp TTTTHHHHTTTGGGTCEEEEESSCCS---S--CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHH
T ss_pred hHHhHHHHHHHHHCCCcEEEECCCCC---C--CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHH
Confidence 2222333445567999998754322 1 1234556677777888888888775 6 999999986432 334556
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+.+.+.+++.|..+....... ....+....++++.+. .++.|+ +.+...+..+++++++.|+. .+...++.+
T Consensus 151 ~gf~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vvg~d 224 (289)
T 3brs_A 151 EGLKIGLSDDSNKIEAIYYCD----SNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE-AKVKLVCID 224 (289)
T ss_dssp HHHHHHHGGGGGGEEEEEECT----TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEEE
T ss_pred HHHHHHHHhCCCcEEeeecCC----CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC-CCEEEEEEC
Confidence 778888888886543322111 1233344455554433 344443 45556677889999999976 444444443
|
| >2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00018 Score=69.36 Aligned_cols=206 Identities=9% Similarity=-0.000 Sum_probs=125.5
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcC--cEEEEcCCC
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD--TLAIVGPQS 100 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~--v~aiiGp~~ 100 (549)
.+..+||+++|.. ..+......+++.+.++. |+++. +.++..++....+....++.++ +.+||....
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPYV--PLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCEE--EEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEEE--EecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 3456899999853 222223445555555442 44444 4455666766666667777788 999887443
Q ss_pred ch-HHHHHHHhhhhcCCcEEecccCCCCCCCCCC--CceEEccCCcHHHHHHHHHHHHH--cCCcEEEEEEecCC--ccc
Q 008904 101 AV-MAHVLSHLANELQVPLLSFTALDPTLSPLQY--PFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFNDDD--QGR 173 (549)
Q Consensus 101 s~-~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~--~~~~r~~ps~~~~~~ai~~~l~~--~~W~~v~ii~~~~~--~g~ 173 (549)
.. ........+...++|+|......+..+...+ +.+..+.++....++.+++.|.. .|-++|++|..... ...
T Consensus 73 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~ 152 (332)
T 2rjo_A 73 DSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAI 152 (332)
T ss_dssp SHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHH
Confidence 33 2223344455679999987543222111111 34566777788888888888877 69999999985432 344
Q ss_pred chHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC---CCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 174 NGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 174 ~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
...+.|.+.+++. |+.+.....-. ....+....++++.+. .++.|+ +.+...+..+++++++.|+.
T Consensus 153 ~R~~Gf~~al~~~pgi~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 153 ERKAGLDAALKKFPGIQLLDFQVAD----WNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHhCCCcEEEeeccCC----CCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 5667788899988 88765432111 1233334445554333 344444 44556677899999998875
|
| >3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=78.75 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=64.4
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++++|++.. .|+||.... .++.+.||++||++++++.+|++ ++++.. +|..++..|.+|++|++ ++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~-~~ 76 (234)
T 3h7m_A 10 HRTIVVGGDR--DYPPYEFID-QNGKPAGYNVELTRAIAEVMGMT--VEFRLG-------AWSEMFSALKSGRVDVL-QG 76 (234)
T ss_dssp SSCEEEEEET--EETTTEEEC-TTSCEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSSSEE-EE
T ss_pred CCEEEEEecC--CCCCeEEEC-CCCCEeeeEHHHHHHHHHHcCCc--eEEEeC-------CHHHHHHHHhCCCeeEE-Ee
Confidence 4779999843 567777654 36779999999999999999999 999888 99999999999999995 68
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 77 ~~~~~~r~ 84 (234)
T 3h7m_A 77 ISWSEKRA 84 (234)
T ss_dssp EECCHHHH
T ss_pred ccCCHhHH
Confidence 99998885
|
| >2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-05 Score=74.00 Aligned_cols=207 Identities=8% Similarity=-0.068 Sum_probs=120.5
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
.....+||+++|....+......+++.+.+ +. |+++.+ .++..++....+....++.+++++||......
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~gi~~~~~---~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 74 (288)
T 2qu7_A 5 TGRSNIIAFIVPDQNPFFTEVLTEISHECQ---KH-----HLHVAV--ASSEENEDKQQDLIETFVSQNVSAIILVPVKS 74 (288)
T ss_dssp --CEEEEEEEESSCCHHHHHHHHHHHHHHG---GG-----TCEEEE--EECTTCHHHHHHHHHHHHHTTEEEEEECCSSS
T ss_pred cCCCCEEEEEECCCCchHHHHHHHHHHHHH---HC-----CCEEEE--EeCCCCHHHHHHHHHHHHHcCccEEEEecCCC
Confidence 456788999999722111223333333333 22 555544 45556666666666777788999998744332
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~ 180 (549)
....+..+ .++|+|.+....+ + +.+..+.......+..+++.|...|-++|+++..... ......+.|.
T Consensus 75 ~~~~~~~l---~~iPvV~~~~~~~---~---~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 145 (288)
T 2qu7_A 75 KFQMKREW---LKIPIMTLDRELE---S---TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYN 145 (288)
T ss_dssp CCCCCGGG---GGSCEEEESCCCS---S---CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred ChHHHHHh---cCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHH
Confidence 21222222 7899998754322 1 1233455677777888889988889999999986432 3445567788
Q ss_pred HHHhhcCeEEEEEEcc--CCCCCC----ChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 181 DKLAEIRCKISYKSAL--PPDQSV----TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~--~~~~~~----~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.+++.|+.+.....+ ... . ...+-...++++.+..++.|+. .+...+..+++++++.|+..++-+.+
T Consensus 146 ~~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~v 219 (288)
T 2qu7_A 146 KAISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKKDVII 219 (288)
T ss_dssp HHHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTTTBEE
T ss_pred HHHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCCceEE
Confidence 8888888764321111 111 1 1222233444443336676654 45556777889999999865443333
|
| >3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00011 Score=69.90 Aligned_cols=212 Identities=9% Similarity=0.010 Sum_probs=126.6
Q ss_pred CCceEEEEEEeccC--CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEEc-C
Q 008904 23 KPEVLNVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMETDTLAIVG-P 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~-d~~~~~~~a~~~~~~l~~~~v~aiiG-p 98 (549)
..+..+||+++|.. ..+......+++-+.++. +|+.+.+... +...++..-.+....++.+++++||- |
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 77 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-------SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAP 77 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-------GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECC
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHH-------HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 45678999999984 333334455555555542 1456666554 33456666666667777889998885 4
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCC--cEEEEEEec------CC
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAIFND------DD 170 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W--~~v~ii~~~------~~ 170 (549)
............+...++|+|......+.. +.+-.+.+.....++.+++.|...|- ++|++|... ..
T Consensus 78 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~ 152 (304)
T 3gbv_A 78 TVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSN 152 (304)
T ss_dssp SSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCH
T ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccch
Confidence 333333444455666799999875432211 12345557777788889999988887 999999842 12
Q ss_pred cccchHHHHHHHHhhcCeEE--EEEEccCCCCCCChhhHHHHHHHHh-c-CCCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 171 QGRNGVTALGDKLAEIRCKI--SYKSALPPDQSVTETDVRNELVKVR-M-MEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 171 ~g~~~~~~l~~~~~~~g~~v--~~~~~~~~~~~~~~~~~~~~l~~l~-~-~~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
......+.+.+.+++.|..+ .....-... .......++++. . ..++.|+...+. +..+++++++.|+ .
T Consensus 153 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~ 224 (304)
T 3gbv_A 153 QQESREIGFRQYMQEHHPACNILELNLHADL----NIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--S 224 (304)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEEEEEEEESSC----SSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--C
T ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeeecCCC----HHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--C
Confidence 33456677888888877543 222111111 112223333332 2 246666665544 6778999999997 4
Q ss_pred CeEEEEeC
Q 008904 247 GYVWIATT 254 (549)
Q Consensus 247 ~~~~i~~~ 254 (549)
+...++.+
T Consensus 225 di~vig~d 232 (304)
T 3gbv_A 225 DFSLIGYD 232 (304)
T ss_dssp SCEEEEES
T ss_pred CcEEEEeC
Confidence 55555554
|
| >2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-06 Score=79.11 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=64.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++. .|+||.... .++.+.||++||++++++.+|++ .++++.. .|+.++..|.+|++|+++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~-~~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 79 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVG-ADGKVSGAAPDVAREIFKRLGVA-DVVASIS-------EYGAMIPGLQAGRHDAITAG 79 (257)
T ss_dssp HTEEEEEEC---CCTTTCEEC-TTCCEESHHHHHHHHHHHHTTCC-EEEEEEC-------CGGGHHHHHHTTSCSEECSC
T ss_pred CCeEEEEcC---CCCCeeEEC-CCCCcccccHHHHHHHHHHcCCC-eeeEEeC-------CHHHHHHHHHCCCcCEEEec
Confidence 467999885 466776544 35789999999999999999985 2777788 89999999999999999988
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 80 ~~~t~~r~ 87 (257)
T 2q88_A 80 LFMKPERC 87 (257)
T ss_dssp CBCCHHHH
T ss_pred ccCCHHHH
Confidence 99999885
|
| >3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00016 Score=68.42 Aligned_cols=204 Identities=11% Similarity=-0.020 Sum_probs=129.8
Q ss_pred eEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH
Q 008904 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (549)
Q Consensus 26 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 103 (549)
.++||+++|.. ..+......+++.+.++. |+++.+...++..++....+....++.+++++||- |.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 47899999885 333344566666666663 45555433222257777777778888889998884 555444
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcC--CcEEEEEEecCC--cccchHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG--WGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~--W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.......+...++|+|......+.. ...+.+..+.+.....++.+++.|...+ -++++++..... ......+.+
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 4445556677899999975433221 1123344556777888888999988888 899999975432 234556788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMD 245 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~ 245 (549)
.+.+++.|+++.... . . .........++++... .++.|+ +.+...+..+++++++.|+..
T Consensus 153 ~~~l~~~g~~~~~~~--~-~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~v 214 (297)
T 3rot_A 153 KTILQDKGIFFEELD--V-G--TDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYD 214 (297)
T ss_dssp HHHHHHTTCEEEEEE--C-C--SCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHT
T ss_pred HHHHHhcCCeEEEee--c-C--CChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCcc
Confidence 889999998886543 1 1 2234444555554332 345444 455566677888888877643
|
| >2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.8e-06 Score=79.65 Aligned_cols=75 Identities=9% Similarity=0.234 Sum_probs=64.9
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... ++.+.||.+|+++++++.+|++ ++++.. .|..++..|.+|++|+++++
T Consensus 41 ~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~~ 107 (272)
T 2pvu_A 41 KKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLD--YELKNI-------GWDPLFASLQSKEVDMGISG 107 (272)
T ss_dssp CCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEEC-------CHHHHHHHHHHTSSSEECSS
T ss_pred CCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCc--eEEEEC-------CHHHHHHHHhCCCCCEEEeC
Confidence 4779999853 566776542 5789999999999999999999 999998 89999999999999999988
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++++++|+
T Consensus 108 ~~~~~~r~ 115 (272)
T 2pvu_A 108 ITITDERK 115 (272)
T ss_dssp CBCCHHHH
T ss_pred CcCCHHHH
Confidence 88888875
|
| >3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00021 Score=67.29 Aligned_cols=209 Identities=13% Similarity=0.015 Sum_probs=129.0
Q ss_pred ceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCCch
Q 008904 25 EVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~ 102 (549)
+..+||+++|... .+......+++.+.++. |+.+. +.+...++....+....++.+++++|| .|..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTAI--ALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 4568999999643 22223445555555442 45554 445666777667777778888999888 455545
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH--cCCcEEEEEEecCC--cccchHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~--~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
........+...++|+|......+ +.+..+.......+..+++.|.. .|-++++++..... ......+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 555566667778999998754321 12334556777778888888888 89999999974432 22345677
Q ss_pred HHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC-----CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM-----EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+.+++. |+++.....+.... .+.......++++.+. .++.| ++.+...+..+++++++.|+. +...++
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~vvg 222 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVIP-NTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQALQAAGRT--DIRTYG 222 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCSS-SHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHHHHTTCC--SCEEEE
T ss_pred HHHHHHHCCCCEEEeeeccCCCC-CCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHHHHcCCC--CeEEEE
Confidence 88888888 57754332222110 1122333444444332 45555 445566777889999999975 444444
Q ss_pred eC
Q 008904 253 TT 254 (549)
Q Consensus 253 ~~ 254 (549)
.+
T Consensus 223 ~d 224 (291)
T 3l49_A 223 VD 224 (291)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00027 Score=66.45 Aligned_cols=205 Identities=8% Similarity=-0.019 Sum_probs=120.9
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. ..+......+++.+.++ .|+++.+ .+...++....+....++.+++++||.....
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 74 (285)
T 3c3k_A 5 TAKTGMLLVMVSNIANPFCAAVVKGIEKTAEK--------NGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDAL 74 (285)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCG
T ss_pred CCCCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34567899999863 22223344455444444 2566544 4455566555555666777799998874433
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.....+..+ . .++|+|......+ +. .+..+.......+..+++.|...|-++|++|..... ......+.+
T Consensus 75 ~~~~~~~~l-~-~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf 146 (285)
T 3c3k_A 75 SELPELQNI-I-GAFPWVQCAEYDP---LS---TVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGY 146 (285)
T ss_dssp GGHHHHHHH-H-TTSSEEEESSCCT---TS---SSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHH
T ss_pred CChHHHHHH-h-cCCCEEEEccccC---CC---CCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHH
Confidence 222333333 4 8999998754321 11 123445666777788888888889999999986532 234556778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHH--HhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVK--VRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~--l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+. ...-.. +..+-...+++ +.+. .++.|+ +.+...+..+++++++.|+..++-+-+
T Consensus 147 ~~~l~~~g~~~~-~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 216 (285)
T 3c3k_A 147 LNRLKFHGLDYS-RISYAE----NLDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAIQALTESGLSIPQDVAV 216 (285)
T ss_dssp HHHHHHHTCCCC-EEEECS----SSSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCce-EeecCC----ChHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 888888887543 111111 12223344555 5443 355555 345556778889999999865443333
|
| >2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.10 E-value=2e-06 Score=77.92 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=59.8
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++|+|++.. |+||... .++++.||++|+++++++.+|++ ++++.. +.|..++..|.+|++|++++++
T Consensus 3 ~~l~v~~~~---~~P~~~~--~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATRV---IPPFVLS--NKGELSGFSIDLWRSIATQIGIE--SKLIEY------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEECC---BTTTBBC--C---CBSHHHHHHHHHHHHHTCC--EEEEEC------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEecC---CCCeEEe--cCCceEEEeHHHHHHHHHHhCCc--EEEEEc------CCHHHHHHHHHCCCcCEEEecc
Confidence 568888753 5666554 46789999999999999999999 999887 3589999999999999999889
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
+.|++|+
T Consensus 70 ~~~~~r~ 76 (228)
T 2pyy_A 70 SITAERE 76 (228)
T ss_dssp BCCHHHH
T ss_pred ccCHHHH
Confidence 9888874
|
| >2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00032 Score=66.05 Aligned_cols=197 Identities=11% Similarity=0.017 Sum_probs=117.8
Q ss_pred EEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC-CchHH
Q 008904 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ-SAVMA 104 (549)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~-~s~~~ 104 (549)
.+||+++|.. ..+......+++.+.++ .|+++. +.++..++....+....++.+++++||... .....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQ--------LGYEAT--IFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4799999863 33333445555555554 245554 456666777666677777888999888643 32222
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEE-ccCCcHHHHHHHHHHHHHc------CCcE--EEEEEecC--Cccc
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQ-TAPNDLYLMSAIAEMVSYF------GWGE--VIAIFNDD--DQGR 173 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r-~~ps~~~~~~ai~~~l~~~------~W~~--v~ii~~~~--~~g~ 173 (549)
......+...++|+|.+....+ +. +.+.. +.++....++.+++.|... |.++ ++++.... ....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGIN---AR--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS---CS--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCC---CC--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 2233445568999998754322 11 11222 5566677778888887776 8888 66666432 2334
Q ss_pred chHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 174 NGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 174 ~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
...+.|.+.+++. |+.+..... . . .+..+....++++.+ ..++.|+. .+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQS-A-E--FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEE-C-T--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEecc-C-C--CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 5567788888888 877643221 1 1 123333344444433 24566554 455667788999999887
|
| >2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00032 Score=67.32 Aligned_cols=211 Identities=8% Similarity=0.050 Sum_probs=122.6
Q ss_pred CceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchH
Q 008904 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 103 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~ 103 (549)
.+..+||+++|.+. .+...+..++++.=+.. .|+.+. +.++..++....+....++.+++++||.......
T Consensus 4 ~~~~~Igvi~~~~~----~~~~~~~~gi~~~a~~~---~g~~l~--i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 74 (325)
T 2x7x_A 4 TPHFRIGVAQCSDD----SWRHKMNDEILREAMFY---NGVSVE--IRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAA 74 (325)
T ss_dssp --CCEEEEEESCCS----HHHHHHHHHHHHHHTTS---SSCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHH
T ss_pred CCCeEEEEEecCCC----HHHHHHHHHHHHHHHHc---CCcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 35678999998722 23333333333322221 145544 4556667766666777778889999887544332
Q ss_pred -HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC--cccchHHH
Q 008904 104 -AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 104 -~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
.......+...++|+|.+....+ +. +.+..+.+.....+..+++.|... |-++|++|..... ......+.
T Consensus 75 ~~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (325)
T 2x7x_A 75 PMTPIVEEAYQKGIPVILVDRKIL---SD--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQG 149 (325)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCC---Cc--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHH
Confidence 22333445567999998743221 11 123445566777778888887775 8999999985432 33455677
Q ss_pred HHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 179 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 179 l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+.+.+++. |+.+..... . . ....+....++++.. ..++.|+ +.+...+..+++++++.|+. .+...++.+
T Consensus 150 f~~al~~~pg~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gip-~dv~vig~D 222 (325)
T 2x7x_A 150 FMAAISKFPDIKLIDKAD-A-A--WERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGRE-KEMIFVGID 222 (325)
T ss_dssp HHHHHHTCTEEEEEEEEE-C-T--TSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTCT-TSSEEEEEE
T ss_pred HHHHHHhCCCCEEEeeec-C-C--CCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCCC-CCeEEEEEC
Confidence 88888888 877653221 1 1 122333344444433 2456555 44555677788999999862 344444444
|
| >3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00042 Score=65.74 Aligned_cols=191 Identities=16% Similarity=0.145 Sum_probs=122.4
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
...+.++||++--...+.-...+.++ .+.+++.|.. .|..+++.+.|.++|+......+.+++++++++||+- .+
T Consensus 4 ~~~~~~~igi~q~~~hp~ld~~~~G~---~~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai-~t 78 (302)
T 3lkv_A 4 IMAKTAKVAVSQIVEHPALDATRQGL---LDGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGI-AT 78 (302)
T ss_dssp ---CCEEEEEEESCCCHHHHHHHHHH---HHHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEE-SH
T ss_pred hhcCCceEEEEEeecChhHHHHHHHH---HHHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEc-CC
Confidence 34578999988544322112344555 4556666644 5788999999999999999999999999999999863 33
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCC------CCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCCc-c
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ-G 172 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~------~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~~-g 172 (549)
..+.+++. ...++|+|..+.++|.... ..-+++.-+. +..-....+++++++ +-++++++|+.... +
T Consensus 79 ~aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s 154 (302)
T 3lkv_A 79 PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA 154 (302)
T ss_dssp HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH
T ss_pred HHHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccH
Confidence 44444443 3457999987777664321 1123444433 111134455666664 68999999976543 3
Q ss_pred cchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 173 RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 173 ~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
....+.+++.+++.|+++...... ...++...++.+.. +.+++++..+.
T Consensus 155 ~~~~~~~~~~~~~~g~~~v~~~~~------~~~~~~~~~~~l~~-~~d~i~~~~d~ 203 (302)
T 3lkv_A 155 VSLMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIAE-KSDVIYALIDN 203 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHHT-TCSEEEECSCH
T ss_pred HHHHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHhccC-CeeEEEEeCCc
Confidence 345677888888899988754322 25567777777653 56777776554
|
| >2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00021 Score=67.38 Aligned_cols=212 Identities=10% Similarity=0.010 Sum_probs=124.7
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. .++......+++.+.++ .|+.+.+ .++..++....+....++.+++++||-....
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATM--------YKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 44567899999863 22222334455444443 2566544 4555666666666667777899988863322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC-C--cccchHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D--QGRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~-~--~g~~~~~~ 178 (549)
.....+. .+...++|+|......+ +. .+..+.......+..+++.|...|.+++++|.... . ......+.
T Consensus 83 ~~~~~~~-~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 155 (289)
T 2fep_A 83 ITDEHVA-EFKRSPVPIVLAASVEE---QE---ETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQG 155 (289)
T ss_dssp CCHHHHH-HHHHSSSCEEEESCCCT---TC---CSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHH
T ss_pred CCHHHHH-HHHhcCCCEEEEccccC---CC---CCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHH
Confidence 2222333 34467999998754321 11 12245566777788888998888999999998653 2 34556778
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
+.+.+++.|+.+.....+... .+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 156 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~D 231 (289)
T 2fep_A 156 YKRALEEANLPFNEQFVAEGD--YTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHcCCCCChheEeeCC--CCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 888999888754321111111 1233334455555443 355554 34555677889999999986443 3344433
|
| >1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00053 Score=65.54 Aligned_cols=206 Identities=12% Similarity=-0.003 Sum_probs=121.3
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEE-cCCCchHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~-d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~ 104 (549)
+||+++|.. .++......+++.+.++. |++ +.+. ++..++....+....++.+++.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~--~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GID--VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCE--EEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCE--EEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999864 223334456666666653 344 4444 3566777777788888888998866 45555443
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH---cCCcEEEEEEecC--CcccchHHHH
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY---FGWGEVIAIFNDD--DQGRNGVTAL 179 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~---~~W~~v~ii~~~~--~~g~~~~~~l 179 (549)
..+...+...+||+|.+.... ... ....+.........++..++.|.. .|-+++++|.... .......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~---~~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDT---KPE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCC---CGG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCC---CCC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 444455667899999974321 111 112232255666677888888766 5788999997532 2234456677
Q ss_pred HHHHhhc--CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 180 GDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 180 ~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+.+++. ++++.....-. .........++++... ..+.|+ +.+...+..+++++++.| . .+...++.+
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY----NDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLK-R-NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHHHHTT-C-CSCEEEEBC
T ss_pred HHHHHhhCCCcEEEEeccCC----CCHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHHHHcC-C-CCEEEEEeC
Confidence 7777665 55554432211 1233444455554433 344444 344556777888888888 5 444444443
|
| >3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0002 Score=69.26 Aligned_cols=213 Identities=9% Similarity=0.010 Sum_probs=128.9
Q ss_pred CCceEEEEEEecc---CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 008904 23 KPEVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (549)
Q Consensus 23 ~~~~i~IG~l~~~---~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~ 99 (549)
....-+||+++|. +.++......+++-+.++ .|+.+. +.++..++....+....++.+++++||-..
T Consensus 58 ~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 127 (338)
T 3dbi_A 58 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEE--------KGRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYP 127 (338)
T ss_dssp --CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHH--------TTCEEE--EEECTTSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred hCCCCEEEEEecCCcccChhHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 3456789999996 232223344454444444 255554 445566666666666777788999988644
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~ 177 (549)
.......+..++...++|+|......+ + +.+..+..+....+...++.|...|-+++++|..... ......+
T Consensus 128 ~~~~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 201 (338)
T 3dbi_A 128 RFLSVDEIDDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 201 (338)
T ss_dssp SSSCHHHHHHHHHHCSSCEEEESSCCS---S---SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCCChHHHHHHHHcCCCCEEEEcCCCC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHH
Confidence 333345566778888999998743322 1 1122355667777888888888899999999975432 3345567
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
.+.+.+++.|+.+.....+... .+...-...++++.+ ..++.|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 202 Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 202 GYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHHCCCCCCcceEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 7888898888765322111211 123333344555443 3455554 45556677889999999987554 3344444
|
| >3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00045 Score=65.27 Aligned_cols=200 Identities=10% Similarity=0.065 Sum_probs=121.5
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
..+||++-+.+.+.-.....+++ +.+++.+- .|.++.+.+.|+..++....+.+..+.++++++||.... ....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~---~~l~~~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQ---DGLAEEGY--KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT-PAAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHH---HHHHHTTC--CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH-HHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHH---HHHHHcCC--CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc-HHHH
Confidence 45799883333322223334443 34444432 356888888999988888777777787889999987432 2222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCC---C---CCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCCc-ccchH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLS---P---LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDDQ-GRNGV 176 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls---~---~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~~-g~~~~ 176 (549)
.+.. ...++|+|..+..++... . ....++..+. +..-+...++++... |-+++++|+..... +....
T Consensus 76 ~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 2322 246899998654443221 1 1112333333 222355666777776 89999999976542 44566
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
+.+++.+++.|+.+....... ..+....++++.. +++.|++..+ ..+...++.+.+.+.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~~------~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVPS------TNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEESS------GGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecCC------HHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 788889999999876543221 3456677777763 6777776544 344455666666664
|
| >2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00034 Score=65.99 Aligned_cols=212 Identities=9% Similarity=-0.044 Sum_probs=124.1
Q ss_pred CCCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 22 LKPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
......+||+++|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++++||....
T Consensus 16 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 85 (293)
T 2iks_A 16 RAGRTRSIGLVIPDLENTSYTRIANYLERQARQ--------RGYQLLI--ACSEDQPDNEMRCIEHLLQRQVDAIIVSTS 85 (293)
T ss_dssp --CCCCEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred hcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHH--------CCCEEEE--EcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345677899999853 22222334444444443 2555544 455556666556666777789998886333
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
......+...+...++|+|......+ + +.+..+.......+..+++.|...|.++|++|..... ......+.
T Consensus 86 ~~~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 159 (293)
T 2iks_A 86 LPPEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQG 159 (293)
T ss_dssp SCTTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHH
T ss_pred CCCcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHH
Confidence 22112233445667999998754321 1 1233455667777888888888889999999986532 23455677
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
|.+.+++.|+...... ... .....-...++++.+. .++.|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 160 f~~~l~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 160 FRTAWKDDPREVHFLY--ANS--YEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp HHHHHTTCCCCEEEEE--ESS--SCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred HHHHHHHcCCCccEEE--cCC--CChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 8888888887433221 111 1233334455555443 345544 34555677788888888876444 3444443
|
| >3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00044 Score=65.16 Aligned_cols=209 Identities=10% Similarity=0.046 Sum_probs=125.3
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCC
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~ 100 (549)
..+..+||+++|... .+......+++-+.++ .|+.+. +.+...++....+....++.+++++||- +..
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 74 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKA--------NKYEAL--VATSQNSRISEREQILEFVHLKVDAIFITTLD 74 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEE--EEECSSCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHH--------cCCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 445678999998743 2222334455444444 145554 4455667777677777788888888875 333
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-c-CCc-----EEEEEEecCC--c
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-F-GWG-----EVIAIFNDDD--Q 171 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-~-~W~-----~v~ii~~~~~--~ 171 (549)
..........+...++|+|......+. .+.+..+.+.....+..+++.|.. + |-+ ++++|..... .
T Consensus 75 ~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~ 149 (293)
T 3l6u_A 75 DVYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYT 149 (293)
T ss_dssp TTTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHH
T ss_pred hHHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCch
Confidence 333334445566679999997543321 122345556777778888888777 5 666 9999985432 3
Q ss_pred ccchHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCe
Q 008904 172 GRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248 (549)
Q Consensus 172 g~~~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~ 248 (549)
.....+.+.+.+++. |+.+.....-. .........++++... .++.| ++.+...+..++++++++|+. +.
T Consensus 150 ~~~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di 222 (293)
T 3l6u_A 150 TNERHRGFLKGIENEPTLSIVDSVSGN----YDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALKKAKIS--GK 222 (293)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHHHTTCC--CC
T ss_pred HHHHHHHHHHHHHhCCCcEEeeeccCC----CCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHHhCCCC--Ce
Confidence 345567888889888 88876543222 1234444455555433 34444 445556677889999999975 44
Q ss_pred EEEEe
Q 008904 249 VWIAT 253 (549)
Q Consensus 249 ~~i~~ 253 (549)
..++.
T Consensus 223 ~vig~ 227 (293)
T 3l6u_A 223 IVVGI 227 (293)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
|
| >3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0003 Score=65.67 Aligned_cols=205 Identities=10% Similarity=0.021 Sum_probs=120.4
Q ss_pred eEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH
Q 008904 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (549)
Q Consensus 26 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 103 (549)
.-+||+++|.. .++......+++.+.++ .|+++.+ .+...++....+....++.++++++|- +....
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~- 71 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNK--------AGYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS- 71 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHH--------TSCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHH--------CCCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 45799999863 22222334444444443 2455544 344556655555666677778887764 32222
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGD 181 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~ 181 (549)
.. ....+...++|+|......+ + +.+..+..+....+..+++.|...|.++++++..... ......+.+.+
T Consensus 72 ~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 72 QR-THQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp HH-HHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred HH-HHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 22 23344567999998743221 1 2234566777777888889888889999999986532 23455677888
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+++.|+.+.....+... ....+....++++.+. .++.|+ +.+...+..+++++++.|+..++-+.|
T Consensus 145 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 213 (275)
T 3d8u_A 145 AMIENYLTPDHFLTTHEA--PSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIAI 213 (275)
T ss_dssp HHHHTTCCCCCEEECSSC--CCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCCCccEEEeCC--CChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 888888754322222211 1233344455555443 355554 445566778899999999765443433
|
| >2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0005 Score=65.31 Aligned_cols=204 Identities=9% Similarity=0.004 Sum_probs=120.0
Q ss_pred EEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC-CchHH
Q 008904 27 LNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ-SAVMA 104 (549)
Q Consensus 27 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~-~s~~~ 104 (549)
-+||+++|... .+......+++.+.+ +. |+ +++.+.++..++....+....++.+++.+||-.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~---~~-----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAK---AA-----PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHH---TC-----TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHH---hc-----CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 47999998632 222223334333333 22 44 2445556666776666666777788999888643 33333
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH------------cCCcEEEEEEecC--C
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY------------FGWGEVIAIFNDD--D 170 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~------------~~W~~v~ii~~~~--~ 170 (549)
......+...++|+|.+....+...-..++.+..+.......++.+++.|.. .|-++|++|.... .
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3344455668999998754221100001245566777777778888888776 6778999998543 2
Q ss_pred cccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC----CCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 171 QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM----EARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 171 ~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~viil~~~~~~~~~il~~a~~~g 242 (549)
......+.|.+.+++.|+.+.....+... .+.......++++-.. .++.|+. .+...+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCC--CCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 33456677888888888765432222211 1233334455555443 3555544 55566777888998887
|
| >2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=4.8e-06 Score=78.66 Aligned_cols=76 Identities=22% Similarity=0.212 Sum_probs=64.1
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHh----CC---CCcCEEEEECCCCCCCCChHHHHHhHhcCc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRL----LP---YAVPYKFIPYGDGHKNPTYSELINQITTGV 533 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~----l~---~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~ 533 (549)
.++|+|++.. .|+||.+... ++.+.||++|+++++++. +| ++ ++++.. .|+.++..|.+|+
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~~-------~~~~~~~~l~~g~ 83 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIPI-------TSQNRIPLLQNGT 83 (287)
T ss_dssp HTEEEEEECS--EETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEEC-------CTTTHHHHHHTTS
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEEC-------CHHHHHHHHHCCC
Confidence 4679998853 5677766543 578999999999999976 57 77 999998 8999999999999
Q ss_pred ccEEecceEEeeccc
Q 008904 534 SRILTKKVAQLTRVS 548 (549)
Q Consensus 534 ~d~~~~~~ti~~~r~ 548 (549)
+|++++++++|++|+
T Consensus 84 ~D~~~~~~~~t~~r~ 98 (287)
T 2vha_A 84 FDFECGSTTNNVERQ 98 (287)
T ss_dssp CSEECSSCBCCHHHH
T ss_pred eeEEeccccCCcchh
Confidence 999998899998885
|
| >3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00036 Score=64.91 Aligned_cols=207 Identities=9% Similarity=-0.053 Sum_probs=125.4
Q ss_pred EEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 27 LNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 27 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
-+||+++|... ++......+++-+.++ .|+++.+ .+...++....+....++.+++++||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA--------RGYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH--------CCCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 47999998743 2222344455444444 2565554 44555666666666777788898888533321122
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKL 183 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~ 183 (549)
.....+...++|+|......+ + +.+..+.......++.+++.|...|-++++++..... ......+.+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---P---AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---T---TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---c---cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 333455667999998754322 1 1123455677777888889999999999999986543 3345677888888
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--C-CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRM--M-EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~-~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
++.|+.+.....-. .+.......++++-+ . .++.|+ +.+...+..++++++++|+...+...++.+
T Consensus 147 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 147 QGYTGEVRRYQGEA----FSRECGQRLMQQLIDDLGGLPDALV-TTSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTCCSEEEEEEESS----SSHHHHHHHHHHHHHHHTSCCSEEE-ESSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHcCCChheeecCC----CCHHHHHHHHHHHHhcCCCCCcEEE-EeCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 99898765433222 123333344444432 2 356554 455667778899999999722334444444
|
| >3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.9e-06 Score=77.52 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=65.0
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++++|++.. .|+|+.... .++.+.||++|+++++++.+|++ ++++.. .|..++..|.+|++|+++++
T Consensus 30 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 30 NRIWIVGTNA--TYPPFEYVD-AQGEVVGFDIDLAKAISEKLGKQ--LEVREF-------AFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp -CEEEEEECS--CBTTTBEEC-TTSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSSSEECSC
T ss_pred CCeEEEEECC--CCCCceEEC-CCCCEEEEEHHHHHHHHHHhCCe--EEEEec-------CHHHHHHHHhCCCccEEeec
Confidence 4678888753 456766543 36789999999999999999999 999998 89999999999999999989
Q ss_pred eEEeeccc
Q 008904 541 VAQLTRVS 548 (549)
Q Consensus 541 ~ti~~~r~ 548 (549)
++.|++|+
T Consensus 98 ~~~~~~r~ 105 (268)
T 3qax_A 98 MSITPSRQ 105 (268)
T ss_dssp CBCCHHHH
T ss_pred CccCHhHh
Confidence 99998885
|
| >3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00062 Score=64.89 Aligned_cols=200 Identities=9% Similarity=0.004 Sum_probs=122.7
Q ss_pred eEEEEEEecc-CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH
Q 008904 26 VLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (549)
Q Consensus 26 ~i~IG~l~~~-~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 103 (549)
..+||+++|. +.++......+++-+.++. |+++. +.+...++....+....++.+++++||- |.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 4579999996 3444455666776666652 55554 4455667777677777788889988885 333333
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHH-HcCCcEEEEEEecCC--cccchHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDDD--QGRNGVTALG 180 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~-~~~W~~v~ii~~~~~--~g~~~~~~l~ 180 (549)
.......+...++|+|......+. ... ...+.......++.+++.|. ..|-+++++|..... ......+.+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 234445566789999987543221 111 13445567777888888887 889999999975432 2334567777
Q ss_pred HHHhhc----CeEEEEEEccCCCCCCChhhHHHHHHHHhc-C--CCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 181 DKLAEI----RCKISYKSALPPDQSVTETDVRNELVKVRM-M--EARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 181 ~~~~~~----g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~--~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
+.+++. ++.+....... . .........++++-+ . .++.|+ +.+...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQWVD-G--WLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEECG-G--GCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeeccCC-C--cCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 778776 56665433211 1 122333344444432 2 445444 44556677889999998875
|
| >2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0013 Score=61.59 Aligned_cols=205 Identities=11% Similarity=0.107 Sum_probs=119.1
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||+++|.. .++......+++.+.++. |+.+ .+.++..++....+....++.++|++||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKI--IVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689998863 222233455555555542 4554 34556667766666677778889988775 43333222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-C-CcEEEEEEecCC--cccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD--QGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-~-W~~v~ii~~~~~--~g~~~~~~l~~ 181 (549)
.....+...++|+|.+....+ +. +.+..+.......++.+++.|... | -+++++|..... ......+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 233445667999998743211 11 122334456666677778887766 5 899999985432 23345667888
Q ss_pred HHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 182 KLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 182 ~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+++. |+.+.....-. ....+-...++++.+. .++.| ++.+...+..+++++++.|+ .+...++.+
T Consensus 148 al~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAAD----FDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp HHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred HHHhCCCCEEEeeccCC----CCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 88887 87764322111 1233333444544332 34443 44555677788999999987 444444443
|
| >1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00078 Score=65.09 Aligned_cols=208 Identities=5% Similarity=-0.047 Sum_probs=120.6
Q ss_pred CCceEEEEEEecc--CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCC--CChHHHHHHHHHHHhcCcEEEEcC
Q 008904 23 KPEVLNVGAIFSF--GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK--FNGFLSIMGALQFMETDTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~--~~~~~a~~~~~~l~~~~v~aiiGp 98 (549)
.....+||+++|. +..+-.....+++.+.++ .|+++.+...++. .++..-.+....++.+++++||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYK--------LNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHH--------TTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHH--------cCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567899999986 333323344555544443 2566766655554 566666666677778899998875
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHc-C-CcEEEEEEecCC-cccc
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD-QGRN 174 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~-~-W~~v~ii~~~~~-~g~~ 174 (549)
............+...++|+|..........+ ...+.+..+.++....+..+++.|... | -++|++|..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 44332222233345568999876322111100 011223445667777788888888774 7 999999975432 2334
Q ss_pred hHHHHHHHHhhcCe-EEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 175 GVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 175 ~~~~l~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
..+.+.+.+++.|. ..... +... .....-...++++.+ ..++.|+ +.+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQSA--YYTK--ATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEEE--ECCC--SSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEEE--ecCC--CCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 55677788888776 32222 2211 123333344444433 2355554 4455567788999999887
|
| >2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00049 Score=65.36 Aligned_cols=211 Identities=9% Similarity=0.019 Sum_probs=121.6
Q ss_pred eEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc-hH
Q 008904 26 VLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA-VM 103 (549)
Q Consensus 26 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s-~~ 103 (549)
+++||++.|... .+......+++.+.++. |+.+. +.++..++....+....++.+++++||..... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 578999999743 22233445555555542 45554 44555666666666667777899988864333 22
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcC---CcEEEEEEecCC--cccchHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG---WGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~---W~~v~ii~~~~~--~g~~~~~~ 178 (549)
.......+...++|+|......+.. ...+++..+.......+..+++.|...| -++|++|..... ......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 1223344556799999875432211 1001234556677777788888887766 789999986432 23445677
Q ss_pred HHHHHhhcCe-EEEEEEccCCCCCCChhhHHHHHHHHhc-----CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEE
Q 008904 179 LGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWI 251 (549)
Q Consensus 179 l~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i 251 (549)
+.+.+++.|. .+..... . . .....-...++++.+ ..++.|+. .+...+..+++++++.|+..++ ...+
T Consensus 150 f~~al~~~g~~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQS-G-D--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp HHHHTTTCTTEEEEEEEE-C-T--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHhhCCCeEEEEecc-C-C--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCeEEE
Confidence 8888888885 3332111 1 1 122333334444432 24555544 4555677789999999986543 3333
Q ss_pred Ee
Q 008904 252 AT 253 (549)
Q Consensus 252 ~~ 253 (549)
+.
T Consensus 225 g~ 226 (306)
T 2vk2_A 225 SI 226 (306)
T ss_dssp EE
T ss_pred ee
Confidence 33
|
| >3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00034 Score=65.95 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=122.9
Q ss_pred CCceEEEEEEecc-----C-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE
Q 008904 23 KPEVLNVGAIFSF-----G-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV 96 (549)
Q Consensus 23 ~~~~i~IG~l~~~-----~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii 96 (549)
..+.-+||+++|. . ..+......+++-+.++ . |+++. +.+...++....+....+..+++.+||
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiI 74 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV---E-----GYALY--MSTGETEEEIFNGVVKMVQGRQIGGII 74 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH---T-----TCEEE--ECCCCSHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH---c-----CCEEE--EEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 4456789999997 2 22223344555444444 2 45544 455554444434444455567899888
Q ss_pred cCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccc
Q 008904 97 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRN 174 (549)
Q Consensus 97 Gp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~ 174 (549)
-....... .....+...++|+|......+.. +.+..+.......+..+++.|...|-++++++..... ....
T Consensus 75 i~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~ 148 (292)
T 3k4h_A 75 LLYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRD 148 (292)
T ss_dssp ESCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHH
T ss_pred EeCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHH
Confidence 53333222 34455667899999875432211 1133455677778888999998899999999986533 2345
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEE
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 250 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~ 250 (549)
..+.|.+.+++.|+.+.....+... .+.......++++-+. .++.|+ +.+...+..++++++++|+..++-+-
T Consensus 149 R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~ 223 (292)
T 3k4h_A 149 RLAGMSDALKLADIVLPKEYILHFD--FSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVS 223 (292)
T ss_dssp HHHHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHHHHcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEE
Confidence 5677888888888764321111111 1233444555555444 445554 45556677889999999986544333
|
| >3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00029 Score=66.84 Aligned_cols=206 Identities=8% Similarity=-0.086 Sum_probs=124.9
Q ss_pred CceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCc
Q 008904 24 PEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSA 101 (549)
Q Consensus 24 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s 101 (549)
.++.+||+++|... .+......+++-+.++. |+++.+...+...++....+....++.+++++||- |...
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 74 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDP 74 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSST
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 35678999998642 22233445555555542 45555544433337777777777888889988884 4433
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcC-----CcEEEEEEecC--Ccccc
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG-----WGEVIAIFNDD--DQGRN 174 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~-----W~~v~ii~~~~--~~g~~ 174 (549)
.........+. .++|+|......+.......+.+..+.+.....+..+++.|...+ -++|+++.... .....
T Consensus 75 ~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~ 153 (304)
T 3o1i_D 75 HAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKP 153 (304)
T ss_dssp TSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CH
T ss_pred hHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHH
Confidence 32222233445 899999974332211111234566777888888899999998888 88999997543 23455
Q ss_pred hHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHh-cCCCeEEEEEcchHHHHHHHHHHHHcCCC
Q 008904 175 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR-MMEARVIVVHGYSRTGLMVFDVAQRLGMM 244 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~viil~~~~~~~~~il~~a~~~g~~ 244 (549)
..+.+.+.+++.|+.+.... ... .+.......++++. ...++. | +++...+..+++++++.|+.
T Consensus 154 R~~gf~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 154 VTTGFYEAIKNSDIHIVDSF--WAD--NDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHHTTTTBTEEEEECC--CCC--SCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHHhcCCCEEEEee--cCC--CcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 67888888988888776532 211 12233333333332 235566 4 45667778889999888864
|
| >2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.95 E-value=7.6e-06 Score=75.70 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=65.6
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC---CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEE
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRIL 537 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l---~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~ 537 (549)
.++++|++.. .++|+......++.+.||++|+++++++.+ |++ ++++.. .|+.++..|.+|++|++
T Consensus 37 ~~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~~-------~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVAV-------NAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEEC-------CTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEEc-------CHHHHHHHHhCCCCCEE
Confidence 3678998753 567776655446789999999999999999 999 999998 89999999999999999
Q ss_pred ecceEEeeccc
Q 008904 538 TKKVAQLTRVS 548 (549)
Q Consensus 538 ~~~~ti~~~r~ 548 (549)
+++++.+.+|+
T Consensus 106 ~~~~~~~~~~~ 116 (259)
T 2v25_A 106 IATFTITPERK 116 (259)
T ss_dssp CSSCBCCHHHH
T ss_pred EecCccCHHHH
Confidence 98888888774
|
| >2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0003 Score=66.32 Aligned_cols=211 Identities=9% Similarity=-0.052 Sum_probs=120.0
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHH---HHHHHHhcCcEEEEcC
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM---GALQFMETDTLAIVGP 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~---~~~~l~~~~v~aiiGp 98 (549)
.....+||+++|... ++......+++.+.++ .|+++.+ .++..++....+ ....++.+++++||-.
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 74 (290)
T 2rgy_A 5 TQQLGIIGLFVPTFFGSYYGTILKQTDLELRA--------VHRHVVV--ATGCGESTPREQALEAVRFLIGRDCDGVVVI 74 (290)
T ss_dssp ---CCEEEEECSCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--ECCCSSSCHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------CCCEEEE--EeCCCchhhhhhHHHHHHHHHhcCccEEEEe
Confidence 345678999998642 2222344455444443 2565544 444445544444 5556677799988863
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~ 176 (549)
........+ ..+...++|+|......+ + +.+..+..+....+..+++.|...|-++|++|..... ......
T Consensus 75 ~~~~~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 147 (290)
T 2rgy_A 75 SHDLHDEDL-DELHRMHPKMVFLNRAFD---A---LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERL 147 (290)
T ss_dssp CSSSCHHHH-HHHHHHCSSEEEESSCCT---T---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHH
T ss_pred cCCCCHHHH-HHHhhcCCCEEEEccccC---C---CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHH
Confidence 332222233 334557999998753222 1 1223455677777888888888889999999986532 234556
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEe
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIAT 253 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~ 253 (549)
+.+.+.+++.|+.+.....+... .+..+-...++++.+ ..++.|+ +.+...+..+++++++.|+..++ ...++.
T Consensus 148 ~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~ 224 (290)
T 2rgy_A 148 DGFFDELARHGIARDSVPLIESD--FSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGDVSVIGY 224 (290)
T ss_dssp HHHHHHHHTTTCCGGGSCEEECC--SSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHHHHcCCCCCcccEEecC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 77888888888654211111111 122233334444432 3456665 45556677889999999986543 333433
|
| >3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0013 Score=62.42 Aligned_cols=211 Identities=13% Similarity=-0.016 Sum_probs=127.9
Q ss_pred eEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH
Q 008904 26 VLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (549)
Q Consensus 26 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 103 (549)
.-+||++.+... .+......+++.+.++. |+.+.+. .++..++....+....++.+++++||- |.....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 357888887743 33334456666666653 5666542 356667777777777788889998885 333333
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC-cccchHHHHH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRNGVTALG 180 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~-~g~~~~~~l~ 180 (549)
.......+...++|+|......+ +. +.+..+.++....+..+++.|... |-++++++..... ......+.+.
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAP---DS--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCT---TS--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCC---CC--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 33344555668999998754322 11 123345577777888889888888 9999999985432 2234456778
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+.+++.|..+......... .........+.++.+. .++.| ++.+...+..+++++++.|+. .+...++.+
T Consensus 150 ~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGI-FATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEE-EECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 8888776544332222211 1233344445554333 33433 345556677889999999986 555555554
|
| >4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.9e-06 Score=75.77 Aligned_cols=76 Identities=16% Similarity=0.345 Sum_probs=65.0
Q ss_pred CeEEEeecCcccccccEEe--ecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 462 RQLRIGVPNRVSYRDFVFK--VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~--~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
++++|++.. .|+|+... ..+++.+.||++|+++++++.+|++ ++++.. +|..++..|.+|++|++++
T Consensus 39 ~~l~v~~~~--~~~P~~~~~~~~~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~ 107 (269)
T 4i62_A 39 GKLVVALNP--DFAPFEYQKVVDGKNQIVGSDIELAKAIATELGVE--LELSPM-------SFDNVLASVQSGKADLAIS 107 (269)
T ss_dssp TEEEEEECS--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTCE--EEEEEC-------CHHHHHHHHHTTSCSEECS
T ss_pred CeEEEEecC--CCCCceeecccCCCCcEeeecHHHHHHHHHHHCCc--eEEEEc-------CHHHHHHHHhCCCccEEec
Confidence 578998753 45666552 2356789999999999999999999 999998 9999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
+++.|++|+
T Consensus 108 ~~~~~~~r~ 116 (269)
T 4i62_A 108 GVSKTDERS 116 (269)
T ss_dssp SCBCCHHHH
T ss_pred CCcCCHhHh
Confidence 999998875
|
| >2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00037 Score=67.14 Aligned_cols=209 Identities=9% Similarity=-0.000 Sum_probs=121.6
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. .++......+++.+.++ .|+.+.+ .++..++....+....++.+++++||.....
T Consensus 60 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 129 (332)
T 2o20_A 60 SKRTTTVGVILPTITSTYFAAITRGVDDIASM--------YKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSS 129 (332)
T ss_dssp --CCCEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSC
T ss_pred cCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34567899999863 22223344455444444 2566544 4555566655556666777899988863322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.....+.. +...++|+|......+ +.. +..+.+.+...+..+++.|...|-+++++|..... ......+.|
T Consensus 130 ~~~~~~~~-l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 202 (332)
T 2o20_A 130 LDEKIRTS-LKNSRTPVVLVGTIDG---DKE---IPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGY 202 (332)
T ss_dssp CCHHHHHH-HHHHCCCEEEESCCCT---TSC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHH
T ss_pred CCHHHHHH-HHhCCCCEEEEccccC---CCC---CCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHH
Confidence 22223333 3467999998754322 112 22345666667788888888889999999986532 234556778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+.....+... .+..+-...++++.+..++.|+. .+...+..+++++++.|+..++-+.+
T Consensus 203 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disv 271 (332)
T 2o20_A 203 QEALLEANIEFDENLVFEGN--YSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEI 271 (332)
T ss_dssp HHHHHHTTCCCCGGGEECSC--CSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEE
Confidence 88888888754321111111 12222233444433236676655 45566778899999999865443433
|
| >8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0008 Score=63.81 Aligned_cols=215 Identities=10% Similarity=0.002 Sum_probs=122.9
Q ss_pred ceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCch
Q 008904 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 102 (549)
++++||+++|.. .++......+++-+.++. |+++ .+.++ .++....+....++.+++++||- |....
T Consensus 1 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 69 (306)
T 8abp_A 1 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPK 69 (306)
T ss_dssp -CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCch
Confidence 368999999874 223334456666666553 4554 45555 47777777777888889988875 44444
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHH-HcCC-----cEEEEEE-ecC--Cccc
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGW-----GEVIAIF-NDD--DQGR 173 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~-~~~W-----~~v~ii~-~~~--~~g~ 173 (549)
........+...++|+|......+.......+.+..+.......++..++.|. +++- .+++++. ... ....
T Consensus 70 ~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~ 149 (306)
T 8abp_A 70 LGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTAR 149 (306)
T ss_dssp GHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHH
T ss_pred hhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHH
Confidence 44544556677899999875332221111111233344556656665665554 3233 3888886 332 2334
Q ss_pred chHHHHHHHHhhcCeE---EEEEEccCCCCCCChhhHHHHHHHHhcCC--CeE-EEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 174 NGVTALGDKLAEIRCK---ISYKSALPPDQSVTETDVRNELVKVRMME--ARV-IVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~---v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~v-iil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
...+.+.+.+++.|.. +..... . . .+...-...++++.... .+. +|++.+...+..+++++++.|+...+
T Consensus 150 ~R~~Gf~~~l~~~g~~~~~~~~~~~-~-~--~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~d 225 (306)
T 8abp_A 150 RRTTGSMDALKAAGFPEKQIYQVPT-K-S--NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 225 (306)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEC-S-S--SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHhcCCCCcEEEeecc-C-C--CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCc
Confidence 5567788888887642 332221 1 1 12334445555555443 445 35555666778899999999975423
Q ss_pred eEEEEeC
Q 008904 248 YVWIATT 254 (549)
Q Consensus 248 ~~~i~~~ 254 (549)
...++.+
T Consensus 226 i~vvG~D 232 (306)
T 8abp_A 226 IIGIGIN 232 (306)
T ss_dssp EEEEEES
T ss_pred eEEEEeC
Confidence 3344444
|
| >2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.4e-05 Score=69.90 Aligned_cols=203 Identities=12% Similarity=0.027 Sum_probs=109.9
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
.||+++|.- .++......+++-+. .+. |+.+. +.++..++....+....++.+++++||........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~---~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVL---LEQ-----RYDLA--LFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHH---GGG-----TCEEE--ECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHH---HHC-----CCEEE--EEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 388998853 222122233333332 222 45443 44544444433444556667788888853322222 2
Q ss_pred HHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC-C-----ccc-chHHHH
Q 008904 107 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D-----QGR-NGVTAL 179 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~-~-----~g~-~~~~~l 179 (549)
....+...++|+|......+ + +..+.......++.+++.|...|-+++++|.... . ... ...+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 23445567999998743221 1 3455567777788888998888999999998654 2 334 567788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.+.+++.|+.+.....+... .+..+-...++++.+.. ++.|+ +.+...+..+++++++.|+..++-+.+.
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 213 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITR--HSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVL 213 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEEC--SSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEE
T ss_pred HHHHHHcCCCCChHHeeecC--CChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 88898888754321011111 12333344555554433 55555 5566677788999999998655544443
|
| >3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00035 Score=65.72 Aligned_cols=209 Identities=9% Similarity=-0.035 Sum_probs=121.6
Q ss_pred eEEEEEEecc-----CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 26 VLNVGAIFSF-----GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 26 ~i~IG~l~~~-----~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
.-+||+++|. ..++......+++.+.++ .|+++.+ .++..++....+....++.+++++||....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA--------VNYFVLP--FPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH--------TTCEEEE--CCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH--------cCCEEEE--EeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 4579999986 334434455566555554 2555543 444444444344555666778998886332
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
...... ...+...++|+|......+ +.. +..+.......+..+++.|...|-++|++|..... ......+.
T Consensus 74 ~~~~~~-~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYNDPR-VQFLLKQKFPFVAFGRSNP---DWD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTCHH-HHHHHHTTCCEEEESCCST---TCC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCcHH-HHHHHhcCCCEEEECCcCC---CCC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 221222 3344567999998754221 111 22344566677788888888889999999986432 23455677
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-C---CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEe
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-M---EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIAT 253 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~---~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~ 253 (549)
|.+.+++.|+.+.....+... .+..+-...++++.+ . .++.|+. .+...+..+++++++.|+..++ ...++.
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vig~ 223 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGE--GTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTDLAIIGF 223 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 888888888754321111111 123333445555544 3 4555554 4556677889999999986543 344444
Q ss_pred C
Q 008904 254 T 254 (549)
Q Consensus 254 ~ 254 (549)
+
T Consensus 224 d 224 (287)
T 3bbl_A 224 D 224 (287)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A | Back alignment and structure |
|---|
Probab=97.91 E-value=8.1e-06 Score=76.99 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=65.6
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .|+||.... .++.+.||.+|+++++++.+|++ ++++.. .|+.++..|.+|++|++++.
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~G~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHD-KDGKLTGYDVEVTRAVAEKLGVK--VEFKET-------QWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEEC-CCCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCcCEEEec
Confidence 4679999854 477776654 46679999999999999999999 999999 79999999999999999988
Q ss_pred eEE-eeccc
Q 008904 541 VAQ-LTRVS 548 (549)
Q Consensus 541 ~ti-~~~r~ 548 (549)
+++ |.+|.
T Consensus 124 ~~~~t~~r~ 132 (283)
T 2yln_A 124 VGLTSPERQ 132 (283)
T ss_dssp CCCCSHHHH
T ss_pred CccCChhhh
Confidence 888 88874
|
| >1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-05 Score=76.65 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC---CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEe
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILT 538 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l---~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~ 538 (549)
++++|++.. .|+||.... .++.+.||++|+++++++.+ |++ ++++.. .|+.++..|.+|++|+++
T Consensus 44 ~~l~v~~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~~~~g~~--~~~~~~-------~~~~~~~~l~~G~~D~~~ 111 (292)
T 1xt8_A 44 GVVRIGVFG--DKPPFGYVD-EKGNNQGYDIALAKRIAKELFGDENK--VQFVLV-------EAANRVEFLKSNKVDIIL 111 (292)
T ss_dssp SSEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHHSCTTC--EEEEEC-------CGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEECC--CCCCeeEEC-CCCCEeeEhHHHHHHHHHHhccCCce--EEEEEc-------CHHHHHHHHhCCCeeEEe
Confidence 578998753 467776654 46789999999999999999 999 999998 899999999999999999
Q ss_pred cceEEeeccc
Q 008904 539 KKVAQLTRVS 548 (549)
Q Consensus 539 ~~~ti~~~r~ 548 (549)
++++++.+|+
T Consensus 112 ~~~~~~~~r~ 121 (292)
T 1xt8_A 112 ANFTQTPQRA 121 (292)
T ss_dssp SSCBCCHHHH
T ss_pred ecCCCCcchh
Confidence 8888888875
|
| >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0021 Score=62.26 Aligned_cols=215 Identities=12% Similarity=0.014 Sum_probs=130.8
Q ss_pred eEEEEEEeccCC--CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHh--cCcEEEEcCCCc
Q 008904 26 VLNVGAIFSFGT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME--TDTLAIVGPQSA 101 (549)
Q Consensus 26 ~i~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~--~~v~aiiGp~~s 101 (549)
..+||+++|... ++......+++-+.++. |+++.+. +...++....+.+.+++. +++++||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~~--~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRIL--YAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEEE--ECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEEE--ECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 468999999753 23334556666666553 4555544 566677777778888888 588888764343
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCC-------CCCC-ceEEccCCcHHHHHHHHHHHHHcC------C-cEEEEEE
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSP-------LQYP-FFVQTAPNDLYLMSAIAEMVSYFG------W-GEVIAIF 166 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~-------~~~~-~~~r~~ps~~~~~~ai~~~l~~~~------W-~~v~ii~ 166 (549)
.....+...+...++|+|.+....+.... ..|+ ++..+.+.....+..+++.|...+ - ++++++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 44555566677889999987654332210 1122 256667778888888888887766 4 7898887
Q ss_pred ecCC--cccchHHHHHHHHhhcCe-EEEEEEccCCCCCCChhhHHHHHHHHhcCCCeE-EEEEcchHHHHHHHHHHHHcC
Q 008904 167 NDDD--QGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 167 ~~~~--~g~~~~~~l~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~v-iil~~~~~~~~~il~~a~~~g 242 (549)
.... ......+.+.+.+++.|. .+.... ... .+.......++++-...+++ .|++++...+..+++++++.|
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G 228 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQLV--YGE--WNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELG 228 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEEE--ECT--TCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEEe--eCC--CcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcC
Confidence 5432 334456778888888885 222222 211 12333344455543333332 234455567778999999999
Q ss_pred CCCCC-eEEEEeC
Q 008904 243 MMDSG-YVWIATT 254 (549)
Q Consensus 243 ~~~~~-~~~i~~~ 254 (549)
+..++ ...++.+
T Consensus 229 ~~vP~di~vvg~d 241 (350)
T 3h75_A 229 RKPGTDLLFSGVN 241 (350)
T ss_dssp CCBTTTBEEEEES
T ss_pred CCCCCCeEEEecC
Confidence 86544 3334433
|
| >1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... | Back alignment and structure |
|---|
Probab=97.88 E-value=0.001 Score=64.16 Aligned_cols=208 Identities=11% Similarity=-0.009 Sum_probs=120.9
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
....+||+++|.. .++......+++.+.++ .|+.+.+ .++..++....+....++.+++++||-.....
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 125 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQ--------KGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 125 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 4456899999864 22222344455444443 2566544 45555666555566667778999888532221
Q ss_pred HHHHHHHhhh-hcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 103 MAHVLSHLAN-ELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~-~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.. .....+. ..++|+|......+. . ++...+.......+..+++.|...|.+++++|..... ......+.+
T Consensus 126 ~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf 199 (340)
T 1qpz_A 126 PE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 199 (340)
T ss_dssp CH-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHH
T ss_pred Ch-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHH
Confidence 11 1223333 368999987543221 1 1123455666667788888888889999999975432 234556778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 250 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~ 250 (549)
.+.+++.|+.+.....+... .+...-...++++.+. .++.|+. .+...+..+++++++.|+..++-+-
T Consensus 200 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~dis 269 (340)
T 1qpz_A 200 MKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVS 269 (340)
T ss_dssp HHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHCCCCCChhheEeCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeE
Confidence 88888888764322112111 1223333445555443 4555554 4556677889999999986544333
|
| >3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0013 Score=61.74 Aligned_cols=211 Identities=9% Similarity=-0.045 Sum_probs=120.1
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ-FMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~-l~~~~v~aiiGp~~s 101 (549)
..+.-.||+++|...... .+...+..++++.=++ .|+.+.+. +...+.... ....+ +.++++++||-....
T Consensus 5 ~~~s~~Igvv~~~~~~~~-~~~~~~~~gi~~~a~~----~g~~~~~~--~~~~~~~~~-~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELM-GFTSQMVFGITEVLST----TQYHLVVT--PHIHAKDSM-VPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp --CCCEEEEECBCCCCSS-CHHHHHHHHHHHHHTT----SSCEEEEC--CBSSGGGTT-HHHHHHHHHTCCSEEEEESCC
T ss_pred cCCCCEEEEEecCCcccc-HHHHHHHHHHHHHHHH----cCCEEEEe--cCCcchhHH-HHHHHHHHcCCccEEEEecCC
Confidence 345678999999743111 2223333333333222 25655544 333333222 23333 445688877742222
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
... .....+...++|+|......+ + +.+-.+.......+..+++.|...|-++++++..... ......+.+
T Consensus 77 ~~~-~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf 149 (288)
T 3gv0_A 77 PND-PRVRFMTERNMPFVTHGRSDM---G---IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGF 149 (288)
T ss_dssp TTC-HHHHHHHHTTCCEEEESCCCS---S---CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHH
T ss_pred CCc-HHHHHHhhCCCCEEEECCcCC---C---CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHH
Confidence 111 233455668999998754321 1 1223455677778888999999999999999976533 234566788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+.....+... .........++++.+. .++.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 150 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 220 (288)
T 3gv0_A 150 NRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDI 220 (288)
T ss_dssp HHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEE
T ss_pred HHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 88899999876543222222 2334444556666544 345554 455566778999999999865543333
|
| >3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00021 Score=67.43 Aligned_cols=205 Identities=15% Similarity=0.072 Sum_probs=109.9
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. ..+......+++.+.++ .|+++.+. .++..++....+....++.+++++||.....
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 5 KKSSNVIAAVVSSVRTNFAQQILDGIQEEAHK--------NGYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp ---CCEEEEECCCCSSSHHHHHHHHHHHHHHT--------TTCEEEEE-C----------CHHHHHHSSCCSEEEEESCC
T ss_pred cccCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 34567899999853 22222333444433332 25555443 1444454444445556667789888863332
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC--CcccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~--~~g~~~~~~l 179 (549)
.....+ ..+...++|+|......+ + + +..+.++....+..+++.|...|-+++++|.... .......+.|
T Consensus 76 ~~~~~~-~~l~~~~iPvV~~~~~~~---~---~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 147 (290)
T 3clk_A 76 LTDDNL-QLLQSSDVPYCFLSMGFD---D---D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGY 147 (290)
T ss_dssp ----CH-HHHHCC--CEEEESCC-----C---C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHH
T ss_pred CCHHHH-HHHHhCCCCEEEEcCCCC---C---C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHH
Confidence 222223 344567999998744321 1 2 3345567777788888998888999999997542 3345567788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
.+.+++.|+.+.....+... ....+-...++++.+ ..++.|+. .+...+..+++++++.|+..++
T Consensus 148 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 148 KKALKEANIAINQEWIKPGD--YSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp HHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHcCCCCCcceEEcCC--CChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 88898888764321111111 123333345555543 34555554 4555677789999999986544
|
| >3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0012 Score=62.15 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=119.3
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
...+.-.||++++.+.++......+++-+.++ .|+.+.+...+.. .. -.+....++.+++++||-....
T Consensus 8 ~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~--~~-~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 8 RQASSRLLGVVFELQQPFHGDLVEQIYAAATR--------RGYDVMLSAVAPS--RA-EKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp -----CEEEEEEETTCHHHHHHHHHHHHHHHH--------TTCEEEEEEEBTT--BC-HHHHHHHHTTTTEEEEEEETCC
T ss_pred hcCCCCEEEEEEecCCchHHHHHHHHHHHHHH--------CCCEEEEEeCCCC--HH-HHHHHHHHHhCCCCEEEEECCC
Confidence 45567789999944333323344455444444 2566666554433 22 3445556667799988853322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALG 180 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l~ 180 (549)
.....+.. +.. ++|+|......+ + +.+-.+..+....+...++.|...|-++|+++..... ......+.+.
T Consensus 77 ~~~~~~~~-~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~ 148 (289)
T 3k9c_A 77 FDTDELGA-LAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFL 148 (289)
T ss_dssp CCHHHHHH-HHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHH
T ss_pred CCHHHHHH-HHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHH
Confidence 22233333 344 999998754322 1 2233455677777888889998899999999986543 2345567788
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.+++.|+.+.... +... .+...-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 149 ~al~~~g~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 217 (289)
T 3k9c_A 149 AAMDRHGLSASATV-VTGG--TTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPADISV 217 (289)
T ss_dssp HHHHHTTCGGGEEE-ECCC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHCCCCCCccE-EECC--CCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 88888887632211 2221 2233444555555443 345543 455566778899999999875543333
|
| >3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00024 Score=66.94 Aligned_cols=209 Identities=13% Similarity=0.036 Sum_probs=123.1
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
..+.-+||+++|... .+......+++-+.++ .|+.+. +.+...++....+....++.+++++||-....
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARH--------KGYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 445678999998743 2222334455444444 255554 44555566666666667777899988853333
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
. .......+...++|+|......+ + +.+..+..+....+..+++.|...|-++++++..... ......+.+
T Consensus 75 ~-~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 147 (291)
T 3egc_A 75 G-EHDYLRTELPKTFPIVAVNRELR---I---PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGF 147 (291)
T ss_dssp S-CCHHHHHSSCTTSCEEEESSCCC---C---TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHH
T ss_pred C-ChHHHHHhhccCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHH
Confidence 2 23344556677999998754322 1 2234455677778888999998899999999976532 334556778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+......... .+.......+.++.+ ..++.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 148 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 218 (291)
T 3egc_A 148 RAAMSAAGLPVRQEWIAAGG--VRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEI 218 (291)
T ss_dssp HHHHHHTTCCCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEE
T ss_pred HHHHHHcCCCCCHHHeEeCC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 88888888754321111111 011112233344332 3455554 455667778899999999875443333
|
| >2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.3e-05 Score=75.91 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=64.9
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC---CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEe
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILT 538 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l---~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~ 538 (549)
++|+|++.. .|+|+.... .++.+.||.+|+++++++.+ |++ ++++.. .|+.++..|.+|++|+++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~-~~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~~-------~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVD-ANGKNQGFDVEIAKDLAKDLLGSPDK--VEFVLT-------EAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHHSCGGG--EEEEEC-------CGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEcC--CCCCceEEC-CCCCEeehHHHHHHHHHHHhccCCce--EEEEEc-------cHHHHHHHHhCCCeeEEE
Confidence 568998753 567776644 46789999999999999999 999 999999 899999999999999999
Q ss_pred cceEEeeccc
Q 008904 539 KKVAQLTRVS 548 (549)
Q Consensus 539 ~~~ti~~~r~ 548 (549)
+++++|.+|+
T Consensus 123 ~~~~~~~~r~ 132 (291)
T 2yjp_A 123 ANFTQTPERA 132 (291)
T ss_dssp SSCBCCHHHH
T ss_pred eCCCCChHHH
Confidence 8888888875
|
| >2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00028 Score=67.98 Aligned_cols=204 Identities=11% Similarity=0.017 Sum_probs=119.2
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. .++......+++.+.++. |+.+.+ .++..++....+....++.+++++||.....
T Consensus 57 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 57 SKKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp TC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred hCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44577899999863 333334556666555552 555544 4444455444445555666789888863322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC-C--cccchHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D--QGRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~-~--~g~~~~~~ 178 (549)
.....+ ..+...++|+|......+ +.. +..+.......+..+++.|...|.+++++|.... . ......+.
T Consensus 127 ~~~~~~-~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 199 (332)
T 2hsg_A 127 VTEEHV-EELKKSPVPVVLAASIES---TNQ---IPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKG 199 (332)
T ss_dssp CCHHHH-HHHTTSSSCEEEESCCCS---CTT---SCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHH
T ss_pred CCHHHH-HHHHhCCCCEEEEccccC---CCC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHH
Confidence 222333 334567999998754321 111 2234456666778888888888999999998653 2 34556788
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
+.+.+++.|+.+.....+... .+...-...++++.+. .++.|+ +.+...+..+++++++.|+..+
T Consensus 200 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP 266 (332)
T 2hsg_A 200 YKRALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVP 266 (332)
T ss_dssp HHHHHHTTTCCCCGGGEEECC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCC
Confidence 889999888754321111111 1223333445555433 456655 4555667788999999997543
|
| >3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0032 Score=58.59 Aligned_cols=208 Identities=10% Similarity=-0.007 Sum_probs=120.6
Q ss_pred CCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 23 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
..+.-+||+++|... ..+...+..++++.=++ .|+.+.+ .+...++..-.+....++.+++++||-.....
T Consensus 4 ~~~s~~Igvi~~~~~---~~~~~~~~~gi~~~~~~----~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 4 TQSSKLIAVIVANID---DYFSTELFKGISSILES----RGYIGVL--FDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp -CCCCEEEEEESCTT---SHHHHHHHHHHHHHHHT----TTCEEEE--EECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCCcEEEEEeCCCC---chHHHHHHHHHHHHHHH----CCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 445678999998742 12223333333332222 2555554 44555666555666667777898888533333
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-c--ccchHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-Q--GRNGVTAL 179 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~--g~~~~~~l 179 (549)
......+...++|+|......+ +...+ .+..+....+..+++.|...|-++++++..... . .....+.|
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---ACPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TCSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CCCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 3444556678999998753322 21122 345677778888999999999999999987543 2 13445566
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEe
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 253 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 253 (549)
.+.+++.+. +. +...............+.++. ..++.|+ +.+...+..+++++++.|+..++-+-|.+
T Consensus 147 ~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 147 LAAAQDVDV-LE----VSESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp HTTCSEEEE-EE----ECSSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred HHHHHhCCc-EE----EeccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 666666643 21 111100112334445555544 3444444 45666777889999999987655454443
|
| >3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00017 Score=67.50 Aligned_cols=206 Identities=9% Similarity=-0.016 Sum_probs=118.1
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
.+.-+||+++|.. ..+......+++-+.++ . |+.+.+...+ ++....+....++.+++++|| .....
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~ 70 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTP---K-----GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDI 70 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGG---G-----TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHH---C-----CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCC
Confidence 3457899999874 33333444454444433 2 5565554433 333333445556677899988 33322
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK 182 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~ 182 (549)
....+.. .++|+|......+ .+...+ .+.......++.+++.|...|-++++++...........+.+.+.
T Consensus 71 ~~~~~~~----~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~ 141 (280)
T 3gyb_A 71 PDFTVPD----SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEAT 141 (280)
T ss_dssp ------------CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ChhhHhh----cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHH
Confidence 2222222 8999998754331 112223 344567777888999998899999999986554445566788888
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
+++.|+.+.... .... .........++++.+. .++.|+ +.+...+..++++++++|+..++ ...++.+
T Consensus 142 l~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 142 MRAHGLEPLSND-YLGP--AVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHHTTCCCEECC-CCSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHcCcCCCccc-ccCC--CCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 988887665332 2222 2233334444444332 355554 45566777889999999986544 3334433
|
| >3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00043 Score=65.14 Aligned_cols=208 Identities=9% Similarity=0.018 Sum_probs=119.3
Q ss_pred CCCceEEEEEEecc--CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 008904 22 LKPEVLNVGAIFSF--GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (549)
Q Consensus 22 ~~~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~ 99 (549)
...+..+||+++|. +..+-.....+++-+.++ . |+.+.+...+...+.. .+....+..+++++||-..
T Consensus 7 ~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~~~~~~~~~~~~~--~~~~~~l~~~~vdgiIi~~ 76 (289)
T 3g85_A 7 NSQSKPTIALYWSSDISVNIISRFLRGLQSKLAK---Q-----NYNYNVVICPYKTDCL--HLEKGISKENSFDAAIIAN 76 (289)
T ss_dssp ----CCEEEEEEETTSCGGGHHHHHHHHHHHHHH---T-----TTCSEEEEEEECTTCG--GGCGGGSTTTCCSEEEESS
T ss_pred ccCCCceEEEEeccccchHHHHHHHHHHHHHHHH---c-----CCeEEEEecCCCchhH--HHHHHHHhccCCCEEEEec
Confidence 45667899999993 233333445555555544 2 4445444332222111 1222334456898888644
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~ 177 (549)
.......+... ...++|+|......+ .+-.+.......++.+++.|...|-++++++..... ......+
T Consensus 77 ~~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (289)
T 3g85_A 77 ISNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNK 147 (289)
T ss_dssp CCHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHH
T ss_pred CCcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHH
Confidence 44333333333 357899998754321 123455677778888999999999999999986533 2345677
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+.+++.|+.+.....+... .........++++-+. .++.|+ +.+...+..++++++++|+..++-+-|
T Consensus 148 gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 220 (289)
T 3g85_A 148 GFIETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEI 220 (289)
T ss_dssp HHHHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEE
Confidence 8888898888764321111111 1233444555555443 345554 455667778899999999875543333
|
| >3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0032 Score=59.27 Aligned_cols=212 Identities=9% Similarity=0.033 Sum_probs=119.4
Q ss_pred CCceEEEEEEeccCC--CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 23 KPEVLNVGAIFSFGT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
....-.||+++|... .....+...+..++++.=++ .|+.+. +.++..++....+....+..+++++||-...
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~----~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~ 77 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ----HGYGTQ--TTVSNNMNDLMDEVYKMIKQRMVDAFILLYS 77 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT----TTCEEE--ECCCCSHHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH----CCCEEE--EEcCCCChHHHHHHHHHHHhCCcCEEEEcCc
Confidence 345678999995421 00112223333333332222 255553 4454444444444445556678988885322
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
... ......+...++|+|......+ +.. ..+..+.......+...++.|...|-+++++|..... ......+.
T Consensus 78 ~~~-~~~~~~l~~~~iPvV~i~~~~~---~~~-~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (295)
T 3hcw_A 78 KEN-DPIKQMLIDESMPFIVIGKPTS---DID-HQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQG 152 (295)
T ss_dssp CTT-CHHHHHHHHTTCCEEEESCCCS---SGG-GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHH
T ss_pred ccC-hHHHHHHHhCCCCEEEECCCCc---ccc-CCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHH
Confidence 222 2334455678999998753221 110 0123344566667788888888889999999986543 23456678
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-----CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
+.+.+++.|+.+.... .. .+.......++++.+ ..++.|+ +.+...+..++++++++|+..++-+-|
T Consensus 153 f~~al~~~g~~~~~~~-~~----~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 224 (295)
T 3hcw_A 153 FETVASQFNLDYQIIE-TS----NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVMT 224 (295)
T ss_dssp HHHHHHHTTCEEEEEE-EC----SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEEE
T ss_pred HHHHHHHcCCCeeEEe-cc----CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 8888999998765221 11 123333333444322 1455554 456666788999999999875544443
|
| >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0013 Score=63.57 Aligned_cols=210 Identities=7% Similarity=-0.035 Sum_probs=124.3
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
....-.||+++|... ++......+++-+.+ + .|+.+. +.++..++..-.+....++.+++++||-....
T Consensus 65 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~---~-----~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLSNMVFPEVLTGINQVLE---D-----TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp TSCCSEEEEEESCSSSSSHHHHHHHHHHHHT---S-----SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHHHH---H-----CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 445678999998742 222233333333222 2 256654 44555666666666667777888887753222
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC---CcccchHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~---~~g~~~~~~ 178 (549)
... .....+...++|+|....... . +....+..+...-+..+++.|...|-+++++|.... .......+.
T Consensus 135 ~~~-~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 207 (344)
T 3kjx_A 135 HSE-AARAMLDAAGIPVVEIMDSDG---K---PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEG 207 (344)
T ss_dssp CCH-HHHHHHHHCSSCEEEEEECSS---C---CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEEeCCCC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHH
Confidence 122 334556678999998742111 1 222345566777788888888888999999998653 223455677
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
|.+.+++.|+.+.....+... .....-...++++-+ ..++.|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 208 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 208 FTEVLGKNGVEIEDREFYSGG--SALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHHTTCCCSCEEECSSC--CCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888899888765433222222 122333334444332 2455555 4556677888999999998765444443
|
| >3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00095 Score=62.95 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=123.3
Q ss_pred eEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC-ch-
Q 008904 26 VLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS-AV- 102 (549)
Q Consensus 26 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~-s~- 102 (549)
.-+||+++|... .+-.....+++-+.++ .|+.+.+ .++..++....+....++.+++.+||-... +.
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 84 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSE--------QGYSMLL--TSTNNNPDNERRGLENLLSQHIDGLIVEPTKSAL 84 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTS
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHHCCCCEEEEecccccc
Confidence 378999999743 3333445555555544 2565554 455566766666777777889988885332 21
Q ss_pred --HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHH
Q 008904 103 --MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTAL 179 (549)
Q Consensus 103 --~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l 179 (549)
........+...++|+|......+. ...+ .+..+....++.+++.|...|-++++++..... ......+.+
T Consensus 85 ~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf 158 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGIPFAMINASYAE---LAAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGF 158 (298)
T ss_dssp CCTTHHHHHHHHHTTCCEEEESSCCTT---CSSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhcCCCEEEEecCcCC---CCCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHH
Confidence 2334445566789999987543221 1222 344567777888999998899999999986543 233456778
Q ss_pred HHHHhhcCeEEEEEE--ccCCCCCCChhhHHHHHHHHhc-C-C--CeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 180 GDKLAEIRCKISYKS--ALPPDQSVTETDVRNELVKVRM-M-E--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~--~~~~~~~~~~~~~~~~l~~l~~-~-~--~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.+.+++.|+.+.... ..... .........++++-+ . . ++.|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 159 IQAHRERELFPSPDMIVTFTTE--EKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHHTTCCCCGGGEEEECHH--HHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEEeccc--chhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888888887543211 11100 000111233333322 2 2 45544 4556667789999999998755444443
|
| >3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0016 Score=61.70 Aligned_cols=210 Identities=10% Similarity=-0.008 Sum_probs=121.7
Q ss_pred CCCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 22 LKPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
.....-.||+++|.. .++......+++-+.++ .|+.+.+ .++..++....+....++.+++++||-...
T Consensus 11 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 80 (303)
T 3kke_A 11 RHSRSGTIGLIVPDVNNAVFADMFSGVQMAASG--------HSTDVLL--GQIDAPPRGTQQLSRLVSEGRVDGVLLQRR 80 (303)
T ss_dssp ------CEEEEESCTTSTTHHHHHHHHHHHHHH--------TTCCEEE--EECCSTTHHHHHHHHHHHSCSSSEEEECCC
T ss_pred hhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecC
Confidence 445677899999864 33333445555555554 2555554 444555555555566667779998885433
Q ss_pred chHHH-HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHH
Q 008904 101 AVMAH-VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 177 (549)
Q Consensus 101 s~~~~-~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~ 177 (549)
..... .+..+.+ ++|+|......+. ..+ .+.......+...++.|...|-++++++..... ......+
T Consensus 81 ~~~~~~~~~~l~~--~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 151 (303)
T 3kke_A 81 EDFDDDMLAAVLE--GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKE 151 (303)
T ss_dssp TTCCHHHHHHHHT--TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHH
T ss_pred CCCcHHHHHHHhC--CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHH
Confidence 32223 4444444 9999987543321 222 344566777888888888899999999985432 2345567
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH-----hcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eE
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-----RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YV 249 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-----~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~ 249 (549)
.+.+.+++.|+.+......... .....-...++++ .+. .++.|+ +.+...+..+++++++.|+..++ ..
T Consensus 152 Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~ 228 (303)
T 3kke_A 152 GYLETLASAGLRSEAAWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRLGLRVPEDLS 228 (303)
T ss_dssp HHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHcCCCCCcceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceE
Confidence 7888888888764321111111 1233334455555 433 345544 45556677889999999986544 33
Q ss_pred EEEe
Q 008904 250 WIAT 253 (549)
Q Consensus 250 ~i~~ 253 (549)
.++.
T Consensus 229 vig~ 232 (303)
T 3kke_A 229 IVGI 232 (303)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0015 Score=61.64 Aligned_cols=210 Identities=9% Similarity=-0.025 Sum_probs=119.2
Q ss_pred CceEEEEEEecc-----CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcC
Q 008904 24 PEVLNVGAIFSF-----GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGP 98 (549)
Q Consensus 24 ~~~i~IG~l~~~-----~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp 98 (549)
...-+||+++|. +..+......+++-+.++ .|+.+.+...+. .. ...+....+..+++++||-.
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~-~~--~~~~~~~~l~~~~vdGiIi~ 72 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGK--------RGLDLLLIPDEP-GE--KYQSLIHLVETRRVDALIVA 72 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH--------TTCEEEEEEECT-TC--CCHHHHHHHHHTCCSEEEEC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHH--------CCCEEEEEeCCC-hh--hHHHHHHHHHcCCCCEEEEe
Confidence 345689999983 222222334444444443 256777665543 11 11222233445688888853
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~ 176 (549)
...... .....+...++|+|...... .+ +.+-.+.......+...++.|...|-++++++..... ......
T Consensus 73 ~~~~~~-~~~~~l~~~~iPvV~~~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 73 HTQPED-FRLQYLQKQNFPFLALGRSH---LP---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp SCCSSC-HHHHHHHHTTCCEEEESCCC---CS---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCCCCh-HHHHHHHhCCCCEEEECCCC---CC---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 322212 33345567799999875432 11 1233455677777888889998899999999986543 234556
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEe
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIAT 253 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~ 253 (549)
+.+.+.+++.|+.+......... .+...-...++++-+. .++.|+ +++...+..+++++++.|+..++ ...++.
T Consensus 146 ~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vig~ 222 (294)
T 3qk7_A 146 QGYVQTMSEAGLMPLAGYLQKAD--PTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISLIAY 222 (294)
T ss_dssp HHHHHHHHTTTCCCCTTCEEEEC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEEEEE
T ss_pred HHHHHHHHHCCCCCChhHeecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 78888898888754211101111 1233333444544433 445544 45566777899999999987554 344444
Q ss_pred C
Q 008904 254 T 254 (549)
Q Consensus 254 ~ 254 (549)
+
T Consensus 223 D 223 (294)
T 3qk7_A 223 D 223 (294)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0037 Score=60.69 Aligned_cols=211 Identities=9% Similarity=0.052 Sum_probs=121.5
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
....-.||+++|... .+......+++-+.++ .|+.+.+ .++..++....+....++.+++++||-....
T Consensus 67 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 136 (355)
T 3e3m_A 67 TKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQ--------GGLQLLL--GYTAYSPEREEQLVETMLRRRPEAMVLSYDG 136 (355)
T ss_dssp ----CEEEEEESCSBCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred cCCCCEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 344567999998743 2112233444443333 2566544 4555566665566666777888887753222
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc---ccchHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ---GRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~---g~~~~~~ 178 (549)
... .....+...++|+|...... .. +....+..+...-+..+++.|...|-+++++|...... .....+.
T Consensus 137 ~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~G 209 (355)
T 3e3m_A 137 HTE-QTIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAG 209 (355)
T ss_dssp CCH-HHHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHH
Confidence 222 33445667899999863211 11 22235566777778888888888999999999875432 3456778
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+.+++.|+.+.....+.... .....-...++++.+ ..++.|+ +.+...+..+++.+++.|+..++-+-|.
T Consensus 210 f~~al~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 210 FKRAMREAGLNPDQEIRLGAPP-LSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp HHHHHHHTTSCSCCEEEESCSS-CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHHHHCCcCCCccEEEecCC-CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8889999887643211111110 122233334444432 3455544 4556677788999999998755444443
|
| >3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00059 Score=65.65 Aligned_cols=203 Identities=8% Similarity=0.001 Sum_probs=118.1
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.. .++......+++.+.++ .|+.+.+ .++..++....+....++.+++++|| ....
T Consensus 57 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~ 125 (330)
T 3ctp_A 57 TKNSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRS 125 (330)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETC
T ss_pred cCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCC
Confidence 34567899999864 22223344555544443 2566554 45555666656666677778999998 4332
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
... ..+...++|+|.+....+ + ..+ .+.......+..+++.|...|-++|++|..... ......+.+
T Consensus 126 ~~~----~~l~~~~iPvV~~~~~~~---~-~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 194 (330)
T 3ctp_A 126 QCE----DEYANIDIPVVAFENHIL---D-NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGF 194 (330)
T ss_dssp CCS----GGGTTCCSCEEEESSCCC---T-TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHH
T ss_pred CCH----HHHHhcCCCEEEEeccCC---C-CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHH
Confidence 211 234567999998754322 1 222 344566666788888888889999999986532 344566778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc-CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.+. ...+... .....-...++++.+ ..++.|+. .+...+..+++++++.|+..++-+-+
T Consensus 195 ~~al~~~g~~~~-~~~~~~~--~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disv 263 (330)
T 3ctp_A 195 LDGARAKDLEID-FIEFQHD--FQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEVQI 263 (330)
T ss_dssp HHHHHHTTCCCE-EEECSSS--CCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCcc-eeEEcCC--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 888999887654 2222211 111111112223222 24566554 44556777899999999865543433
|
| >3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0037 Score=60.51 Aligned_cols=206 Identities=11% Similarity=0.020 Sum_probs=115.1
Q ss_pred CceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCch
Q 008904 24 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 102 (549)
Q Consensus 24 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~ 102 (549)
....+||+++|.. .++......+++.+.++ .|+.+.+ .++..++....+....++.+++++||-.....
T Consensus 64 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 133 (348)
T 3bil_A 64 SRSNTIGVIVPSLINHYFAAMVTEIQSTASK--------AGLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEE 133 (348)
T ss_dssp ----CEEEEESCSSSHHHHHHHHHHHHHHHH--------TTCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGG
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 4466799999863 22222334444444443 2555544 34445665555555666777898888644333
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHH
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 180 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~ 180 (549)
.... ...+...++|+|......+. ....+ .+..+....+..+++.|...|-++|++|..... ......+.+.
T Consensus 134 ~~~~-~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 207 (348)
T 3bil_A 134 CANQ-LEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFK 207 (348)
T ss_dssp GHHH-HHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHH
T ss_pred ChHH-HHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 2222 33445679999987542211 01222 344566666788888888889999999975432 2345567788
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEE
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 250 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~ 250 (549)
+.+++.|+..... +... ....+-...++++.+...- .|++.+...+..+++++++.|+..++-+-
T Consensus 208 ~al~~~g~~~~~v--~~~~--~~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~g~~~al~~~G~~vP~dis 272 (348)
T 3bil_A 208 AACANSKIGEQLV--FLGG--YEQSVGFEGATKLLDQGAK-TLFAGDSMMTIGVIEACHKAGLVIGKDVS 272 (348)
T ss_dssp HHHHHTTCCCCEE--ECCC--SSHHHHHHHHHHHHHTTCS-EEEESSHHHHHHHHHHHHHTTCCBTTTBE
T ss_pred HHHHHcCcCccEE--EcCC--CCHHHHHHHHHHHHcCCCC-EEEEcChHHHHHHHHHHHHcCCCCCCCeE
Confidence 8888888632111 1111 1223333445554433322 44455666678899999999986544333
|
| >3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0021 Score=59.89 Aligned_cols=202 Identities=10% Similarity=0.040 Sum_probs=112.1
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
..+.-+||+++|... .+......+++-+.++ . |+.+.+ .+...++....+....++.+++++||-...+
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~---~-----g~~~~~--~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~ 74 (277)
T 3e61_A 5 KRKSKLIGLLLPDMSNPFFTLIARGVEDVALA---H-----GYQVLI--GNSDNDIKKAQGYLATFVSHNCTGMISTAFN 74 (277)
T ss_dssp -----CEEEEESCTTSHHHHHHHHHHHHHHHH---T-----TCCEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECGGG
T ss_pred cCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH---C-----CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 345678999998742 2222334444444443 2 455544 4555566665666666777899988864322
Q ss_pred hHHHHHHH-hhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 102 VMAHVLSH-LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 102 ~~~~~va~-~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
... .. .+...++|+|.+....+. +. .+.......+..+++.|...|-++++++..... ......+.
T Consensus 75 --~~~-~~~~l~~~~iPvV~~~~~~~~------~~--~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g 143 (277)
T 3e61_A 75 --ENI-IENTLTDHHIPFVFIDRINNE------HN--GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQG 143 (277)
T ss_dssp --HHH-HHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHH
T ss_pred --hHH-HHHHHHcCCCCEEEEeccCCC------CC--eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHH
Confidence 222 34 566779999997543321 11 556677778888999998899999999985432 33455677
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+.+++.|+.+.. ...... .....+.. +.+ ...++.|+ +.+...+..++++++++|+..++-+-|.
T Consensus 144 f~~~l~~~~~~~~~-~~~~~~--~~~~~~~~-l~~--~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 144 IKYILDQQRIDYKM-LEATLL--DNDKKFID-LIK--ELSIDSII-CSNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHHHHHC---CEEE-EEGGGG--GSHHHHHH-HHH--HHTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCccc-eecCCC--CHHHHHHH-hhc--CCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 88888888876654 211111 11222222 222 13455554 4555677788999999998755444443
|
| >3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0037 Score=60.22 Aligned_cols=207 Identities=9% Similarity=0.019 Sum_probs=122.1
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCC
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~ 100 (549)
....-.||+++|.. .++......+++-+.++ .|+.+. +.++..++..-.+....++.+++++||- |..
T Consensus 59 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 128 (339)
T 3h5o_A 59 SAKSRTVLVLIPSLANTVFLETLTGIETVLDA--------AGYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLS 128 (339)
T ss_dssp ----CEEEEEESCSTTCTTHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 34566899999874 33334455666655555 256554 4555666666666666777788888774 322
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-cccchHHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTAL 179 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~~~~~~l 179 (549)
... .....+...++|+|...... .. +.. .+..+....+..+++.|...|-++++++..... ......+.+
T Consensus 129 ~~~--~~~~~l~~~~iPvV~~~~~~---~~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf 199 (339)
T 3h5o_A 129 HAE--PFERILSQHALPVVYMMDLA---DD---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGY 199 (339)
T ss_dssp CCT--THHHHHHHTTCCEEEEESCC---SS---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHH
T ss_pred CCH--HHHHHHhcCCCCEEEEeecC---CC---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHH
Confidence 221 33445567899999874321 11 122 555677777888888888899999999986542 233456678
Q ss_pred HHHHhhcCeEEEE-EEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 180 GDKLAEIRCKISY-KSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 180 ~~~~~~~g~~v~~-~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
.+.+++.|+.... ....... .....-...++++.+ ..++.|+ +.+...+..+++++++.|+..++-+-|
T Consensus 200 ~~al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disv 271 (339)
T 3h5o_A 200 RAALDAADCRDAGLEWLDPQP--SSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAI 271 (339)
T ss_dssp HHHHHHTTCCCGGGEEEECSC--CCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHCCCCCCChheEecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEE
Confidence 8888888762110 1111111 122333344444433 2455554 455667788899999999876544433
|
| >2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.017 Score=53.50 Aligned_cols=205 Identities=11% Similarity=0.091 Sum_probs=113.7
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||+++|.- .++-.....+++-+.++. |+.+-+ .++..++..-.+....++.++++++|- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589988763 222223344444444442 455543 445556655555556667778998874 33332222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc--CCcEEEEEEecCC--cccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD--QGRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~--~W~~v~ii~~~~~--~g~~~~~~l~~ 181 (549)
.....+...++|+|......+ +. +....+......-++..++.|... +-+++++|..... ......+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 223444567999998743221 11 111234455666677777777665 5689999985432 22445667888
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+++.|+.+..... . . .+...-...++++-+ ..++. |++.+...+..+++++++.|+ .+...++.+
T Consensus 148 al~~~g~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~g~--~dv~vvGfD 215 (271)
T 2dri_A 148 AVAAHKFNVLASQP-A-D--FDRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAGK--SDVMVVGFD 215 (271)
T ss_dssp HHHHHTCEEEEEEE-C-T--TCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHTC--CSCEEEEEE
T ss_pred HHhcCCCEEEEecC-C-C--CCHHHHHHHHHHHHHhCCCccE-EEECCCcHHHHHHHHHHHcCC--CCcEEEEec
Confidence 88888887643221 1 1 122222333444332 23444 444556667888999999887 344444443
|
| >4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0045 Score=61.44 Aligned_cols=212 Identities=9% Similarity=0.024 Sum_probs=120.3
Q ss_pred CCCceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 22 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....-.||+++|.+.++......+++-+.++. |+.+.+...+... +....+..++|++||-...
T Consensus 21 ~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~- 85 (412)
T 4fe7_A 21 MFTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD- 85 (412)
T ss_dssp CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT-
T ss_pred CCCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC-
Confidence 455678999999865444334555665555553 4555554433221 1234455668888886322
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc----ccchHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ----GRNGVT 177 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~----g~~~~~ 177 (549)
...+...+...++|+|......+... ..+.+-.+.......+..+++.|...|-+++++|...... .....+
T Consensus 86 --~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~ 161 (412)
T 4fe7_A 86 --DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREY 161 (412)
T ss_dssp --CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHH
T ss_pred --ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHH
Confidence 23344556678999998754322110 1123445566777778888999999999999999865432 345677
Q ss_pred HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH-hc-CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 008904 178 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIATT 254 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-~~-~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 254 (549)
.+.+.+++.|+........... ..+.......+.++ +. ..++.|+ +.+...+..+++.+++.|+..++ ...++.+
T Consensus 162 Gf~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 162 AFRQLVAEEKYRGVVYQGLETA-PENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp HHHHHHTTSSSCCEEECCSCSS-CSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred HHHHHHHHcCCCcccccccccc-ccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 8888898888754322111111 01122223333333 32 3455544 45666777888999999986544 4444444
|
| >3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0093 Score=55.43 Aligned_cols=200 Identities=8% Similarity=-0.062 Sum_probs=113.7
Q ss_pred CCceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
.....+||+++|.- ..+......+++-+.++ .|+.+.+... ..++..-. ++ ++++||-....
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~--~~~~~~~~----~~---~vdgiI~~~~~ 67 (277)
T 3cs3_A 5 RRQTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCSG--KKSHLFIP----EK---MVDGAIILDWT 67 (277)
T ss_dssp CCCCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEES--TTTTTCCC----TT---TCSEEEEECTT
T ss_pred ccCCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEeC--CCCHHHHh----hc---cccEEEEecCC
Confidence 44567899999863 22222334444433332 2566655433 22221100 01 67777642222
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
.....+. .+...++|+|......+ + +.+..+..+....+..+++.|...|-+++++|..+.. ......+.+
T Consensus 68 ~~~~~~~-~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 140 (277)
T 3cs3_A 68 FPTKEIE-KFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVS 140 (277)
T ss_dssp SCHHHHH-HHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHH
T ss_pred CCHHHHH-HHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHH
Confidence 1223333 34558999998743221 1 2344556677777888888888889999999986532 234556778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC---CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.+.+++.|+.+. ... . . .+..+-...++++.+. .++.|+ +.+...+..+++++++.|+..++-+.|.
T Consensus 141 ~~~l~~~g~~~~-~~~-~-~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 141 TRELTRFGIPYE-IIQ-G-D--FTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHHTTCCEE-EEE-C-C--SSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHHcCCCee-EEe-C-C--CChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 888888887665 211 1 1 1233334455665444 345544 4555667788899999887655545444
|
| >3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0025 Score=59.43 Aligned_cols=201 Identities=8% Similarity=0.025 Sum_probs=122.0
Q ss_pred CCCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 22 LKPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
...+.-+||+++|... ++......+++-+.++ . |+.+ +.+.++..++..-.+....++.+++++||-..
T Consensus 6 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~- 75 (277)
T 3hs3_A 6 YQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQK---E-----GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA- 75 (277)
T ss_dssp --CCCCEEEEEESCTTSHHHHHHHHHHHHHHHH---T-----TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC-
T ss_pred hcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHH---C-----CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc-
Confidence 3456778999998743 2222334444444443 2 5550 33456666666666666677778898888533
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHH
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 178 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~ 178 (549)
.....+...++|+|.....+ ..+ +.+ .+.......+...++.|. .|-++++++..... ......+.
T Consensus 76 -----~~~~~~~~~~iPvV~~~~~~--~~~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~G 143 (277)
T 3hs3_A 76 -----FTIPPNFHLNTPLVMYDSAN--IND---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEA 143 (277)
T ss_dssp -----CCCCTTCCCSSCEEEESCCC--CCS---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHH
T ss_pred -----hHHHHHHhCCCCEEEEcccc--cCC---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHH
Confidence 11223456799999875430 111 223 666777777888888888 99999999986532 33455678
Q ss_pred HHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 179 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 179 l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.+.+++.|+.+... ..... .+ ...++++.+ ..++.|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 144 f~~~l~~~g~~~~~~-~~~~~----~~--~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 144 MTAEASKLKIDYLLE-ETPEN----NP--YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHHHTTCEEEEE-ECCSS----CH--HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCCCCCCCC-CccCC----ch--HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888899999877654 33222 11 334444433 2345543 4555667788999999998755444443
|
| >1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.032 Score=52.07 Aligned_cols=209 Identities=10% Similarity=0.009 Sum_probs=116.3
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH-H
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM-A 104 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~-~ 104 (549)
+||+++|.. .++-.....+++.+.++. |+.+.+....+..++..-.+....++.++|++||- +..... .
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 689998863 222223344444444442 44554432114556655555566677789998874 333322 2
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCCCC---C--CceEEccCCcHHHHHHHHHHHHHc-C--CcEEEEEEecCCc--ccc
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSPLQ---Y--PFFVQTAPNDLYLMSAIAEMVSYF-G--WGEVIAIFNDDDQ--GRN 174 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~~~---~--~~~~r~~ps~~~~~~ai~~~l~~~-~--W~~v~ii~~~~~~--g~~ 174 (549)
..+. .+...++|+|...... .+.. + +..-.+......-++..++.|... | -+++++|...... ...
T Consensus 75 ~~~~-~~~~~~iPvV~~~~~~---~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~ 150 (288)
T 1gud_A 75 MPVA-RAWKKGIYLVNLDEKI---DMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEA 150 (288)
T ss_dssp HHHH-HHHHTTCEEEEESSCC---CHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHH
T ss_pred HHHH-HHHHCCCeEEEECCCC---CcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhH
Confidence 2333 3445799999874321 1100 0 110235566666777788887776 8 8999999854322 234
Q ss_pred hHHHHHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 175 GVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 175 ~~~~l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
..+.+.+.+++. |+.+.....-. .....-...++++.+ ..++.|+ +.+...+.-+++++++.|+. .+...+
T Consensus 151 R~~Gf~~al~~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~-~dv~vv 224 (288)
T 1gud_A 151 RRNGATEAFKKASQIKLVASQPAD----WDRIKALDVATNVLQRNPNIKAIY-CANDTMAMGVAQAVANAGKT-GKVLVV 224 (288)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEE
T ss_pred HHHHHHHHHHhCCCcEEEEeecCC----ccHHHHHHHHHHHHHhCCCceEEE-ECCCchHHHHHHHHHhcCCC-CCeEEE
Confidence 566788888877 87664422111 122333334444432 2345444 45556678899999999974 455555
Q ss_pred EeC
Q 008904 252 ATT 254 (549)
Q Consensus 252 ~~~ 254 (549)
+.+
T Consensus 225 GfD 227 (288)
T 1gud_A 225 GTD 227 (288)
T ss_dssp EES
T ss_pred EeC
Confidence 554
|
| >3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0041 Score=58.87 Aligned_cols=209 Identities=10% Similarity=0.049 Sum_probs=119.3
Q ss_pred CCCceEEEEEEeccC------CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEE
Q 008904 22 LKPEVLNVGAIFSFG------TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAI 95 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~------~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~ai 95 (549)
.....-+||+++|.. ..+......+++-+.++. |+.+. +.++..++....+....+..+++++|
T Consensus 18 ~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgi 87 (305)
T 3huu_A 18 ITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTR--MTVSENSGDLYHEVKTMIQSKSVDGF 87 (305)
T ss_dssp ---CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEE--ECCCSSHHHHHHHHHHHHHTTCCSEE
T ss_pred hhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEE
Confidence 345567899999972 222223345555444442 45544 44544444444444455566789888
Q ss_pred EcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--cc
Q 008904 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GR 173 (549)
Q Consensus 96 iGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~ 173 (549)
|-....... .....+...++|+|...... .. +.+..+.......+...++.|...|-++|++|...... ..
T Consensus 88 Ii~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~ 160 (305)
T 3huu_A 88 ILLYSLKDD-PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTE 160 (305)
T ss_dssp EESSCBTTC-HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHH
T ss_pred EEeCCcCCc-HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhH
Confidence 753222222 33445567899999875332 11 12234556677778888899988999999999865432 34
Q ss_pred chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH-hc--CCCeEEEEEcchHHHHHHHHHHHHcCCCCCC-eE
Q 008904 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YV 249 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-~~--~~~~viil~~~~~~~~~il~~a~~~g~~~~~-~~ 249 (549)
...+.+.+.+++.|+.+.. . +... ... -...++++ -+ ..++.|+ +.+...+..+++++++.|+..++ ..
T Consensus 161 ~R~~Gf~~~l~~~g~~~~~-~-~~~~---~~~-~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di~ 233 (305)
T 3huu_A 161 DRSVGFKQYCDDVKISNDC-V-VIKS---MND-LRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDIQ 233 (305)
T ss_dssp HHHHHHHHHHHHTTCCCCE-E-EECS---HHH-HHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHHHHHcCCCccc-E-EecC---cHH-HHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcceE
Confidence 5567788888888876543 1 1111 111 23334444 22 2445554 45566777889999999986544 33
Q ss_pred EEEeC
Q 008904 250 WIATT 254 (549)
Q Consensus 250 ~i~~~ 254 (549)
.++.+
T Consensus 234 vig~D 238 (305)
T 3huu_A 234 TATFN 238 (305)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 44443
|
| >3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0098 Score=57.05 Aligned_cols=202 Identities=10% Similarity=0.005 Sum_probs=118.3
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
....-.||+++|... ++......+++-+.++. |+.+.+.. +.. +..-.+....++.+++++||-...
T Consensus 61 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~--~~~-~~~~~~~~~~l~~~~vdGiIi~~~- 128 (333)
T 3jvd_A 61 EHRSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLVAE--ANS-VQAQDVVMESLISIQAAGIIHVPV- 128 (333)
T ss_dssp ---CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEEEE--CCS-HHHHHHHHHHHHHHTCSEEEECCC-
T ss_pred cCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEEEC--CCC-hHHHHHHHHHHHhCCCCEEEEcch-
Confidence 345678999998742 22233455555555542 55655543 333 444445555666779998886433
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l 179 (549)
...+...++|+|......+ +...+ .+..+....+..+++.|...|-+++++|..... ......+.+
T Consensus 129 ------~~~~~~~~iPvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 196 (333)
T 3jvd_A 129 ------VGSIAPEGIPMVQLTRGEL---GPGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGI 196 (333)
T ss_dssp ------TTCCC-CCSCEEEECC-------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHH
T ss_pred ------HHHHhhCCCCEEEECccCC---CCCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 3345567999998754322 11223 344566677788888888889999999986533 234557788
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCC-CeEEEEEcchHHHHHHHHHHHHcCCCCCCeE-EEEeC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-WIATT 254 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~viil~~~~~~~~~il~~a~~~g~~~~~~~-~i~~~ 254 (549)
.+.+++.|+.... .... .+...-...++++.+.. ++.|+ +.+...+..+++++++.|+..++-+ .++.+
T Consensus 197 ~~al~~~g~~~~~--~~~~---~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 197 SHAASIYGAEVTF--HFGH---YSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHHHHTTCEEEE--EECC---SSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHCCCCEEE--ecCC---CCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 8889999987211 1011 12333344455544333 55554 4555667788999999998654433 34433
|
| >1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.014 Score=53.49 Aligned_cols=199 Identities=11% Similarity=0.004 Sum_probs=116.3
Q ss_pred EEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 27 LNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 27 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
-+||+++|... ++......+++-+.++. |+.+.+ .++..++..-.+....+..++++++|-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE 72 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH
Confidence 36899998632 22223345555444442 455544 34445565555555566677888877532211111
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEec--C-CcccchHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--D-DQGRNGVTALGDK 182 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~--~-~~g~~~~~~l~~~ 182 (549)
..+...++|+|...... +.+..+.......+..+++.|...|-++|+++... + .......+.+.+.
T Consensus 73 ---~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~a 141 (255)
T 1byk_A 73 ---EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp ---TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred ---HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHH
Confidence 23445689999874321 12234556677778888888888899999999854 2 2345567788889
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
+++.|+.+.. +... .....-...++++....++.|+ +.+...+..+++++++.|+ .+...++.+
T Consensus 142 l~~~g~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 142 CKAHKLHPVA---ALPG--LAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHHTTCCCEE---ECCC--SCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHHcCCCcce---eecC--CccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 9988875432 1211 1223333344444334556554 4555677888999999987 444444443
|
| >3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.013 Score=55.98 Aligned_cols=206 Identities=7% Similarity=-0.032 Sum_probs=120.5
Q ss_pred ceEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCch
Q 008904 25 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 102 (549)
Q Consensus 25 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~ 102 (549)
+..+||+++|.. ..+......+++-+.++ .|+++.+ .++..++..-.+....++.+++.+||- |....
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~ 71 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQE--------AGYKTDL--QYADDDIPNQLSQIENMVTKGVKVLVIASIDGT 71 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHHTCSEEEECCSSGG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHH--------cCCEEEE--eeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCch
Confidence 356899999975 33223445555555554 2555544 446677777777778888889998885 44444
Q ss_pred HHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHH-------cCCcEEEEEEecCC--ccc
Q 008904 103 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-------FGWGEVIAIFNDDD--QGR 173 (549)
Q Consensus 103 ~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~-------~~W~~v~ii~~~~~--~g~ 173 (549)
........+...++|+|.+....+.. .... ..+.......++.+++.|.. .|-++++++..... ...
T Consensus 72 ~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 72 TLSDVLKQAGEQGIKVIAYDRLIRNS--GDVS--YYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp GGHHHHHHHHHTTCEEEEESSCCCSC--TTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCCC--Ccee--EEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 44445556677899999875433211 1112 33445667777888888777 68889999865332 233
Q ss_pred chHHHHHHHHhhc---C-eEEEEEE-----ccCCCCCCChhhHHHHHHHHhc-----CCCeEEEEEcchHHHHHHHHHHH
Q 008904 174 NGVTALGDKLAEI---R-CKISYKS-----ALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQ 239 (549)
Q Consensus 174 ~~~~~l~~~~~~~---g-~~v~~~~-----~~~~~~~~~~~~~~~~l~~l~~-----~~~~viil~~~~~~~~~il~~a~ 239 (549)
...+.+.+.+++. | +.+.... ..... .....-...++++-. ..++.| ++.+...+..++++++
T Consensus 148 ~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~nd~~A~g~~~al~ 224 (330)
T 3uug_A 148 FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--WDPATAQARMDNLLSAYYTDAKVDAV-LSPYDGLSIGIISSLK 224 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--GCHHHHHHHHHHHHHHHCSSSCCCEE-ECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCceEEeecccccccccCCC--CCHHHHHHHHHHHHHhcCCCCCeEEE-EECCCchHHHHHHHHH
Confidence 4556777777765 3 4433210 00011 112222333333332 344544 3455566778999999
Q ss_pred HcCCCCCC
Q 008904 240 RLGMMDSG 247 (549)
Q Consensus 240 ~~g~~~~~ 247 (549)
++|+..+.
T Consensus 225 ~~g~~vP~ 232 (330)
T 3uug_A 225 GVGYGTKD 232 (330)
T ss_dssp HTTCSSSS
T ss_pred HcCCCCCC
Confidence 99986543
|
| >2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.054 Score=51.43 Aligned_cols=207 Identities=12% Similarity=-0.003 Sum_probs=107.9
Q ss_pred ceEEEEEEecc---CC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 25 EVLNVGAIFSF---GT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 25 ~~i~IG~l~~~---~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
++.+||+++|. +. ++-.....+++.+.++ .|+++.+. ++.. .....+....++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~--------~g~~~~~~--~~~~-~~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQE--------NNAKCKYV--TAST-DAEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHH--------TTCEEEEE--ECCS-GGGHHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHH--------hCCeEEEE--eCCC-HHHHHHHHHHHHHcCCCEEEECCh
Confidence 45789999982 22 2222333444444443 14555443 3322 223345556677788998887432
Q ss_pred chHHHHHHHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHH----HHHHHHcCC-cEEEEEEecC-Cccc
Q 008904 101 AVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAI----AEMVSYFGW-GEVIAIFNDD-DQGR 173 (549)
Q Consensus 101 s~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai----~~~l~~~~W-~~v~ii~~~~-~~g~ 173 (549)
.. ...+..++..+ ++|++......+ + .+.+-.+.. +..++..+ +..+...|- ++|++|.... ....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 22 22344555543 899998643211 0 122222222 23333333 466666676 8999997543 2234
Q ss_pred chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.....+.+.+++.|..+.....+... ......-....+++.+.++++|+.. ....+.-++++++++|+. +.-++++
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANT-FSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSC-SSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccC-ccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 45667778888777543322222211 0112223344555545568876554 444566778888887766 4444544
|
| >1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... | Back alignment and structure |
|---|
Probab=97.18 E-value=0.033 Score=53.71 Aligned_cols=206 Identities=9% Similarity=-0.002 Sum_probs=110.9
Q ss_pred CCceEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCC-hHHHHHHHHHHHhcCcEEEEc--C
Q 008904 23 KPEVLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFN-GFLSIMGALQFMETDTLAIVG--P 98 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~-~~~a~~~~~~l~~~~v~aiiG--p 98 (549)
......||+++|.-. .+......+++-+.++ .|+.+.+. +...+ +..-.+....++.+++++||- +
T Consensus 58 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 58 GKQSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVS--MVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp ----CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEE--ECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred cCCCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 345678999998632 2212233444433333 25666553 33332 333334455566778887764 4
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchH
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGV 176 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~ 176 (549)
..... .+...+...++|+|...... +...+ .+......-+...++.|...|-++|++|..... ......
T Consensus 128 ~~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~ 198 (349)
T 1jye_A 128 LDDQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRL 198 (349)
T ss_dssp CCHHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHH
T ss_pred CCChh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHH
Confidence 33322 22233445789999874321 11223 234455556677778887789999999986432 234456
Q ss_pred HHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 177 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 177 ~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
+.|.+.+++.|+.+..... . . .....-...+.++... .++.|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 199 ~Gf~~al~~~gi~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 199 AGWHKYLTRNQIQPIAERE-G-D--WSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHHHTTCCCSEEEE-C-C--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHHHcCCCcccccc-C-C--CChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 7788888888875432211 1 1 1122222334443332 355554 4455667788999999998655444443
|
| >3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0009 Score=63.35 Aligned_cols=207 Identities=10% Similarity=0.011 Sum_probs=120.3
Q ss_pred CCCceEEEEEEeccCC-CCch-HHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCC
Q 008904 22 LKPEVLNVGAIFSFGT-VNGQ-VSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ 99 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~-~~g~-~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~ 99 (549)
.....-+||+++|... .+-. ....+++-+.++ .|+.+.+ .++..++....+....++.+++++||-..
T Consensus 9 ~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiIi~~ 78 (301)
T 3miz_A 9 RSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANA--------NGKTILI--ANTGGSSEREVEIWKMFQSHRIDGVLYVT 78 (301)
T ss_dssp ---CCCEEEEEESSTTTCCSCHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred hhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 4556778999998753 3333 556666666655 2566554 44555666666666667778888887422
Q ss_pred CchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--ccchHH
Q 008904 100 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVT 177 (549)
Q Consensus 100 ~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~~~~~ 177 (549)
..... ....+...++|+|......+.. .. +..+.......+..+++.|...|-++|+++...... .....+
T Consensus 79 ~~~~~--~~~~~~~~~iPvV~~~~~~~~~--~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 151 (301)
T 3miz_A 79 MYRRI--VDPESGDVSIPTVMINCRPQTR--EL---LPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLD 151 (301)
T ss_dssp EEEEE--CCCCCTTCCCCEEEEEEECSST--TS---SCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHH
T ss_pred CCccH--HHHHHHhCCCCEEEECCCCCCC--CC---CCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHH
Confidence 22111 3344566799999875432211 01 223456677778888999999999999999865432 335567
Q ss_pred HHHHHHhhcCeEEEEEEccCC---CCCCChhhH-HHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCC
Q 008904 178 ALGDKLAEIRCKISYKSALPP---DQSVTETDV-RNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSG 247 (549)
Q Consensus 178 ~l~~~~~~~g~~v~~~~~~~~---~~~~~~~~~-~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~ 247 (549)
.+.+.+++.|+.+.....+.. .. ...... ...++++.+. .++.|+ +.+...+..+++++++.|+..++
T Consensus 152 Gf~~al~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 225 (301)
T 3miz_A 152 AFRRTTSEFGLTENDLSISLGMDGPV-GAENNYVFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIPQ 225 (301)
T ss_dssp HHHHHHHHHTCCGGGEEEEECEESST-TSCEECHHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHcCCCCCcceEEEcCCCCc-CccccHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCC
Confidence 788888888865321111111 10 111111 1334444332 455554 45556677889999998876433
|
| >2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.14 Score=47.89 Aligned_cols=196 Identities=10% Similarity=-0.036 Sum_probs=104.5
Q ss_pred ceEEEEEEecc--CC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 25 EVLNVGAIFSF--GT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 25 ~~i~IG~l~~~--~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
++.+||+++|. +. ++-.....+++.+.++ .|+++. +.++..++....+....++++++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSN--------LDVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHH--------SCCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHH--------hCCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 45789999973 22 3334445555555444 245543 44444444444455566777899999985433
Q ss_pred hHHHHHHHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHc-CCcEEEEEEecCCcccchHHHH
Q 008904 102 VMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-GWGEVIAIFNDDDQGRNGVTAL 179 (549)
Q Consensus 102 ~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~-~W~~v~ii~~~~~~g~~~~~~l 179 (549)
. ...+..++..+ ++|++...... .. +.+-.+......-+.....++.++ +-++|++|...... . ....+
T Consensus 74 ~-~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~Gf 144 (296)
T 2hqb_A 74 F-AEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEGF 144 (296)
T ss_dssp H-HHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHHH
T ss_pred H-HHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHHH
Confidence 2 23345555544 78998764321 11 222223333333333333334342 45899999854322 2 67778
Q ss_pred HHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 180 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 180 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g 242 (549)
.+.+++.|.. .....+... ......-....+++.+.++++|+. .....+.-+++++++.|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~-~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 145 VDGAKYMNES-EAFVRYVGE-WTDADKALELFQELQKEQVDVFYP-AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHTTCC-EEEEEECSS-SSCHHHHHHHHHHHHTTTCCEEEC-CCTTTHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-eEEEEeecc-ccCHHHHHHHHHHHHHCCCcEEEE-CCCCCCHHHHHHHHHcC
Confidence 8888888764 322222211 011222334455555556776554 44455667888888877
|
| >3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.11 Score=50.06 Aligned_cols=206 Identities=15% Similarity=0.048 Sum_probs=110.0
Q ss_pred ccCCCCceEEEEEEeccC---CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEE
Q 008904 19 QGALKPEVLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAI 95 (549)
Q Consensus 19 ~~~~~~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~ai 95 (549)
.++...++++||++++-. ..+-.....+++.+.++. |-++++.+.++..+.....+...+++++++.+|
T Consensus 19 ~~~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~--------G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~I 90 (356)
T 3s99_A 19 PGSMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEAL--------GDKVETTFLENVAEGADAERSIKRIARAGNKLI 90 (356)
T ss_dssp -------CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHH--------TTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEE
T ss_pred cccccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHh--------CCceEEEEEecCCCHHHHHHHHHHHHHCCCCEE
Confidence 333567889999999742 222233455555555554 223566666665555555677778888899999
Q ss_pred EcCCCchHHHHHHHhhhhc-CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC-ccc
Q 008904 96 VGPQSAVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGR 173 (549)
Q Consensus 96 iGp~~s~~~~~va~~~~~~-~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~-~g~ 173 (549)
|+.. .....++..++..+ ++|++......+ . +.-..++++..- ...++-.++.++.+ =++|++|..... .-.
T Consensus 91 i~~g-~~~~~~~~~vA~~~Pdv~fv~id~~~~-~-~Nv~sv~~~~~e-g~ylaG~~A~~~tk--~~kIGfVgg~~~p~v~ 164 (356)
T 3s99_A 91 FTTS-FGYMDPTVKVAKKFPDVKFEHATGYKT-A-DNMSAYNARFYE-GRYVQGVIAAKMSK--KGIAGYIGSVPVPEVV 164 (356)
T ss_dssp EECS-GGGHHHHHHHHTTCTTSEEEEESCCCC-B-TTEEEEEECHHH-HHHHHHHHHHHHCS--SCEEEEEECCCCHHHH
T ss_pred EECC-HHHHHHHHHHHHHCCCCEEEEEecccc-C-CcEEEEEechhH-HHHHHHHHHHHhcC--CCEEEEECCCccHHHH
Confidence 9864 33445566776665 788887532211 1 111123333221 11222223333332 379999985432 222
Q ss_pred chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 174 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 174 ~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g 242 (549)
.....|...++..+..+.....+... ..+...-.+..+.+-+.++++|+...+.. -++++|++.|
T Consensus 165 ~~~~GF~~G~k~~np~i~v~~~~~g~-~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~G 229 (356)
T 3s99_A 165 QGINSFMLGAQSVNPDFRVKVIWVNS-WFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRG 229 (356)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEEECSS-SCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC-CCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcC
Confidence 34556677777665443322222211 01223334555666667899887766553 5788888876
|
| >3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.03 Score=54.38 Aligned_cols=209 Identities=8% Similarity=-0.017 Sum_probs=113.3
Q ss_pred CCceEEEEEEeccCCC--CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCC
Q 008904 23 KPEVLNVGAIFSFGTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 100 (549)
Q Consensus 23 ~~~~i~IG~l~~~~~~--~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~ 100 (549)
....-.||+++|.... ....+...+..++++.=+ |+.+.+...+...+. .-.+....+..+++++||-...
T Consensus 65 ~~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~ 137 (366)
T 3h5t_A 65 TRRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSV 137 (366)
T ss_dssp ---CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESC
T ss_pred cCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecC
Confidence 3456789999997421 111233333334443211 566766655433221 2233344555667877764222
Q ss_pred chHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEec------------
Q 008904 101 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND------------ 168 (549)
Q Consensus 101 s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~------------ 168 (549)
..... ....+...++|+|..... ......+ .+......-+..+++.|...|-+++++|...
T Consensus 138 ~~~~~-~~~~l~~~~iPvV~i~~~---~~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~ 210 (366)
T 3h5t_A 138 AKGDP-HIDAIRARGLPAVIADQP---AREEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTR 210 (366)
T ss_dssp CTTCH-HHHHHHHHTCCEEEESSC---CSCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCH
T ss_pred CCChH-HHHHHHHCCCCEEEECCc---cCCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccc
Confidence 22222 234445679999987432 1112223 3445677778888888988999999999832
Q ss_pred -------CCcccchHHHHHHHHhhcCeEEEE--EEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHH
Q 008904 169 -------DDQGRNGVTALGDKLAEIRCKISY--KSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDV 237 (549)
Q Consensus 169 -------~~~g~~~~~~l~~~~~~~g~~v~~--~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~ 237 (549)
........+.+.+.+++.|+.+.. ...... .....-...++++.+ ..++.|+. .+...+..++++
T Consensus 211 ~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~a 286 (366)
T 3h5t_A 211 ERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWI---NNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEY 286 (366)
T ss_dssp HHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESS---CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCC---CCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHH
Confidence 222345567888888888875321 000111 112232334444432 24555544 555667788999
Q ss_pred HHHcCCCCCCeE
Q 008904 238 AQRLGMMDSGYV 249 (549)
Q Consensus 238 a~~~g~~~~~~~ 249 (549)
+++.|+..++-+
T Consensus 287 l~~~G~~vP~di 298 (366)
T 3h5t_A 287 LKSVGKSAPADL 298 (366)
T ss_dssp HHHTTCCTTTTC
T ss_pred HHHcCCCCCCce
Confidence 999998755433
|
| >3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.3 Score=46.59 Aligned_cols=217 Identities=12% Similarity=0.037 Sum_probs=124.6
Q ss_pred CceEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCC-----CCceEEEEEecCCCChH-----HHHHHHHHHHhc-Cc
Q 008904 24 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVL-----GGRKLSITMHDAKFNGF-----LSIMGALQFMET-DT 92 (549)
Q Consensus 24 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il-----~g~~l~~~~~d~~~~~~-----~a~~~~~~l~~~-~v 92 (549)
..+++||++...-+. .....++++-.+++-|..+... ....++.++..+-.+++ .+++...++... ++
T Consensus 10 ~~~~~igi~t~t~s~-se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLSE-NKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcCC-CHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 357999998876432 3567888899999998754321 01234455554333332 234455555554 78
Q ss_pred EEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC--CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 008904 93 LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD 170 (549)
Q Consensus 93 ~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~ 170 (549)
.+||.-............+...+++.|-+.+....-.. ..+.. +.+......-+...++.|...|-+++++|.....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 88776433322233345566666766554332111000 00111 2455566666777889999999999999986443
Q ss_pred c----ccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhH---HHHHHH-----HhcCCCeEEEEEcchHHHHHHHHHH
Q 008904 171 Q----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDV---RNELVK-----VRMMEARVIVVHGYSRTGLMVFDVA 238 (549)
Q Consensus 171 ~----g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~---~~~l~~-----l~~~~~~viil~~~~~~~~~il~~a 238 (549)
. .....+-+++++++.|+.+.......+ .....+ ..+|.. ++......-|++++...+..+++++
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~---t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ikal 244 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIGLPFVQVNTPNI---NTEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTKA 244 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTTCCEEEEEECCC---SSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCCceeecCCCC---chHHHHHHHHHHHhccccchhhccCCCcEEEECCHHHHHHHHHHH
Confidence 2 223566788999999997755432111 122222 222321 1122232355667777888999999
Q ss_pred HHcCCCC
Q 008904 239 QRLGMMD 245 (549)
Q Consensus 239 ~~~g~~~ 245 (549)
.++|...
T Consensus 245 ~e~Gi~V 251 (371)
T 3qi7_A 245 LELKYIV 251 (371)
T ss_dssp HHHCCBB
T ss_pred HHcCCcc
Confidence 9998643
|
| >3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.24 Score=44.53 Aligned_cols=121 Identities=11% Similarity=-0.001 Sum_probs=81.9
Q ss_pred HHHHHHhcCcEEEEcCCCchHH--------HHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH
Q 008904 83 GALQFMETDTLAIVGPQSAVMA--------HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV 154 (549)
Q Consensus 83 ~~~~l~~~~v~aiiGp~~s~~~--------~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l 154 (549)
.+..|...++.+|+-+.++... .....+.+..++|+++. +.++++.+
T Consensus 58 aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~al 112 (240)
T 3ixl_A 58 HARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNGL 112 (240)
T ss_dssp HHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHHH
T ss_pred HHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHHH
Confidence 3444545589988876555443 33455666678888862 36788888
Q ss_pred HHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC-----CCChhhHHHHHHH-H-hcCCCeEEEEEcc
Q 008904 155 SYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVK-V-RMMEARVIVVHGY 227 (549)
Q Consensus 155 ~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~-l-~~~~~~viil~~~ 227 (549)
++.|-++|+++.. |.....+.+.+.+++.|++|.......... ......+.+.+++ + ...+++.||+.|.
T Consensus 113 ~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~CT 189 (240)
T 3ixl_A 113 RALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSG 189 (240)
T ss_dssp HHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECT
T ss_pred HHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeCC
Confidence 8899999999974 666667788888999999887654433210 0124456677777 6 6678888888887
Q ss_pred hHHH
Q 008904 228 SRTG 231 (549)
Q Consensus 228 ~~~~ 231 (549)
.-..
T Consensus 190 ~l~~ 193 (240)
T 3ixl_A 190 GLLT 193 (240)
T ss_dssp TSCC
T ss_pred CCch
Confidence 5333
|
| >2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.014 Score=51.89 Aligned_cols=52 Identities=8% Similarity=0.023 Sum_probs=43.4
Q ss_pred cceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceEEeec
Q 008904 484 TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVAQLTR 546 (549)
Q Consensus 484 ~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ti~~~ 546 (549)
..+|+|..--|.+... |++ +++... -.|++.|..|.+|++|+||++++.|++
T Consensus 27 s~~yeGlatgl~~~f~---gi~--~~i~~m------rg~~~RI~aL~~gk~D~aI~S~~aa~e 78 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIP--FYYAHM------RGADIRVECLLNGVYDMAVVSRLAAES 78 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSC--EEEEEC------SCHHHHHHHHHTTSCSEEEEEHHHHHH
T ss_pred hhhhhHHHHHHHHHhc---CCc--EEEEEc------cChHHHHHHHHcCCCCEEEEecccchh
Confidence 3479999887766663 777 888766 259999999999999999999999998
|
| >2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A | Back alignment and structure |
|---|
Probab=92.54 E-value=2.9 Score=38.29 Aligned_cols=117 Identities=17% Similarity=0.083 Sum_probs=71.5
Q ss_pred HHHHhcCcEEEEcCCCchHHH--------HHHHhhhhc-----CCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHH
Q 008904 85 LQFMETDTLAIVGPQSAVMAH--------VLSHLANEL-----QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIA 151 (549)
Q Consensus 85 ~~l~~~~v~aiiGp~~s~~~~--------~va~~~~~~-----~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~ 151 (549)
..+...++++|+-+.++.... ....+.+.. ++|+++. ..+++
T Consensus 84 ~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A~~ 138 (273)
T 2xed_A 84 LEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGALV 138 (273)
T ss_dssp HHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHHHH
T ss_pred HHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHHHH
Confidence 334445888888765554221 124444455 7888763 24555
Q ss_pred HHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC-----CCChhhHHHHHHHHhcCCCeEEEEE-
Q 008904 152 EMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMMEARVIVVH- 225 (549)
Q Consensus 152 ~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~viil~- 225 (549)
+.++..+-++|+++. .|.....+.+.+.+++.|+.+.......... ......+...++++...+++.||+.
T Consensus 139 ~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~ 215 (273)
T 2xed_A 139 EGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISC 215 (273)
T ss_dssp HHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEES
T ss_pred HHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcC
Confidence 566777889999996 4554455678888888999876544333210 0123345566666665677888887
Q ss_pred cchH
Q 008904 226 GYSR 229 (549)
Q Consensus 226 ~~~~ 229 (549)
|..-
T Consensus 216 CT~l 219 (273)
T 2xed_A 216 AVQM 219 (273)
T ss_dssp SSSS
T ss_pred CCCc
Confidence 7653
|
| >2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=88.96 E-value=8 Score=34.08 Aligned_cols=165 Identities=13% Similarity=0.104 Sum_probs=84.2
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC----ChH-------HHHHHHHHHHhcCcEE
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF----NGF-------LSIMGALQFMETDTLA 94 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~----~~~-------~a~~~~~~l~~~~v~a 94 (549)
..+||++.|.++..- .+ .++...++.+. +|+..+.+.-..... +.. ...+.+..+...++.+
T Consensus 6 ~~~ig~i~p~~~~~~--~e--~~~~~~~~~~~---~p~~~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d~ 78 (228)
T 2eq5_A 6 KYTIGLIRVITLEDK--EI--LNLHGRIIESA---FPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFEREGVDA 78 (228)
T ss_dssp CEEEEEEESSCCCCH--HH--HTHHHHHHHHH---CTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred ceEEEEEeccCccCH--HH--HHHHHHHHHhh---CCCCeEEEEeCCCCchhccccccHHHhHHHHHHHHHHHHHCCCCE
Confidence 578999999873211 11 11122222222 266666664332211 110 1112233444568999
Q ss_pred EEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccc
Q 008904 95 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRN 174 (549)
Q Consensus 95 iiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~ 174 (549)
|+-+.++. ..+..+-+..++|++... ++.++.....+ ++|+++......
T Consensus 79 iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rigVlat~~t~--- 127 (228)
T 2eq5_A 79 IIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVGVLNLTEET--- 127 (228)
T ss_dssp EEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEEEECSSSCC---
T ss_pred EEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEEEEecCccc---
Confidence 98776665 445556666788888631 11111122355 788888764332
Q ss_pred hHHHHHHHH-hhcCeEEEEEEccCCC-CCC---ChhhHHHHHHHHhcCCCeEEEEEcchHH
Q 008904 175 GVTALGDKL-AEIRCKISYKSALPPD-QSV---TETDVRNELVKVRMMEARVIVVHGYSRT 230 (549)
Q Consensus 175 ~~~~l~~~~-~~~g~~v~~~~~~~~~-~~~---~~~~~~~~l~~l~~~~~~viil~~~~~~ 230 (549)
. ..+.+.+ ++.|..+.... +... ... ....+...++++.+.+++.||+.|..-.
T Consensus 128 ~-~~~~~~~~~~~g~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 128 P-KVIRSILGNNLIAEDHPSG-VSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp C-HHHHHHHGGGEEEEECCTT-CCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred H-HHHHHHHHHHhCccccCCc-eeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 1 3466677 77776542110 1000 000 1233455666666668899999887644
|
| >2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* | Back alignment and structure |
|---|
Probab=87.26 E-value=13 Score=34.65 Aligned_cols=126 Identities=8% Similarity=-0.014 Sum_probs=76.9
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHHH
Q 008904 28 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 107 (549)
Q Consensus 28 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~v 107 (549)
+||.+-............+++.++++.|- ..++.+.+..+-.++..+.+.+.+++++++.+|+...... +..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~-a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP------DIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGT-GNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT------TCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGGG-HHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC------CCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCCC-chHH
Confidence 67777654333345668899999998763 3455554443334677888888999998999999755443 3333
Q ss_pred HHhhhh-----cCCcEEecccCCCCCC---CCCCCceEEccCCcHHHHHHHHHHHHHcCCc
Q 008904 108 SHLANE-----LQVPLLSFTALDPTLS---PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWG 160 (549)
Q Consensus 108 a~~~~~-----~~iP~Is~~~~~~~ls---~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~ 160 (549)
...+.. .++-+|.+........ +...|.+..+..+-...+...++.+..-.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 333333 5677887754221110 0023556666666666777777777666664
|
| >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=86.70 E-value=2.9 Score=40.60 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCcEEEEEEecCCccc--chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 149 AIAEMVSYFGWGEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 149 ai~~~l~~~~W~~v~ii~~~~~~g~--~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
.+.++++.++.+++.+|++...... ...+.+.+.+++.|+++.....+.+. .+...+...++.+++.+++.||-.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPN--PKDTNVRDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3667788889999998886554443 36889999999889876443333333 4567788888889989999998765
Q ss_pred ch--HHHHHHHHHH
Q 008904 227 YS--RTGLMVFDVA 238 (549)
Q Consensus 227 ~~--~~~~~il~~a 238 (549)
.+ -++..++...
T Consensus 101 GGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 101 GGSPHDCGKGIGIA 114 (387)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHH
Confidence 54 4566665544
|
| >2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=85.94 E-value=8.6 Score=33.77 Aligned_cols=80 Identities=5% Similarity=-0.111 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCC-----CCChhhHHHHHHHHhcC--CC
Q 008904 147 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMM--EA 219 (549)
Q Consensus 147 ~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~l~~~--~~ 219 (549)
..++++.++..|-++|+++. .|.....+.+.+.+++.|+.+.......... ......+...++++... ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 46677777778889999996 4554555677788888998876544333210 01223455555555555 77
Q ss_pred eEEEEEcchH
Q 008904 220 RVIVVHGYSR 229 (549)
Q Consensus 220 ~viil~~~~~ 229 (549)
+.||+.|..-
T Consensus 173 daIvLgCT~l 182 (223)
T 2dgd_A 173 DAVYIACTAL 182 (223)
T ss_dssp SEEEECCTTS
T ss_pred CEEEEeCCcc
Confidence 8888877653
|
| >3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A | Back alignment and structure |
|---|
Probab=85.51 E-value=0.76 Score=43.43 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec-ceEEee
Q 008904 492 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK-KVAQLT 545 (549)
Q Consensus 492 idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~-~~ti~~ 545 (549)
-+|+++|++.+|++ ++++.. ..|++++..|.+|++|++++ +.+++.
T Consensus 34 ~~l~~~L~k~lG~~--ve~~~~------~~~~~~i~aL~~G~vDia~~~~~~~~~ 80 (321)
T 3p7i_A 34 TPFLQDMEKKLGVK--VNAFFA------PDYAGIIQGMRFNKVDIAWYGNLSAME 80 (321)
T ss_dssp HHHHHHHHHHHTSC--EEEECC------SSHHHHHHHHHTTSCSEEECCHHHHHH
T ss_pred HHHHHHHHHHHCCC--EEEEec------CCHHHHHHHHHcCCCcEEEEChHHHHH
Confidence 47899999999999 998754 27999999999999999975 355443
|
| >3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=85.37 E-value=9.3 Score=36.43 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=64.8
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
=+||.+-....+.-.....++..+++++| |..++.+.+..+-.++..+.+.+..++++++.+|+...... .
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---G 220 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---A 220 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---H
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---H
Confidence 46787776543333455789999998876 45677777766657899999999999999999998765543 3
Q ss_pred HHHhhhhcCCcEEecccC
Q 008904 107 LSHLANELQVPLLSFTAL 124 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~ 124 (549)
+...+...++..|.+...
T Consensus 221 v~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHcCCEEEEEcCc
Confidence 456666788888876443
|
| >3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.95 E-value=0.7 Score=43.43 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=45.7
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecc
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKK 540 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~ 540 (549)
.++|+|++.. .+.++... ..+ .+|+++|++.+|++ ++++.. ..|++++..|.+|++|+++.+
T Consensus 3 ~~~l~iG~~p--~~~p~~~~----~~~----~~l~~~l~k~lG~~--ve~~~~------~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGIIS--TESSQNLK----SIW----EPFLKDMSQQTGYQ--VKAFFA------PDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEECC--SSCHHHHH----HHH----HHHHHHHHHHHSSE--EEEECC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEec--CCCHHHHH----HHH----HHHHHHHHHHhCCC--EEEEeC------CCHHHHHHHHHcCCCCEEEEC
Confidence 3678998754 23332111 112 58999999999999 888754 279999999999999999754
|
| >3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* | Back alignment and structure |
|---|
Probab=84.56 E-value=1.6 Score=42.25 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
..+.++++.+|.+++.+|++.........+.+.+.+++.|+.+.....+.+. .+...+.+.++.+++.+++.||-.+.
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPN--PTVTAVLEGLKILKDNNSDFVISLGG 97 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSS--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 4466778889999999998764332235788999999999877543334444 45677888888888888999888766
Q ss_pred h--HHHHHHHHHHH
Q 008904 228 S--RTGLMVFDVAQ 239 (549)
Q Consensus 228 ~--~~~~~il~~a~ 239 (549)
+ -++.+++....
T Consensus 98 Gsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 98 GSPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 5 45566665544
|
| >2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=81.54 E-value=22 Score=32.69 Aligned_cols=121 Identities=7% Similarity=-0.057 Sum_probs=74.5
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHHH
Q 008904 27 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 106 (549)
Q Consensus 27 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~~ 106 (549)
=+||.+-..... . ...+++.++++.| +. +..+.+..+-.++..+.+.+.+++++++.+|+...+.. +..
T Consensus 127 ~~Ig~i~g~~~~--~-r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D~~-a~G 195 (296)
T 2hqb_A 127 HKVGVIAAFPWQ--P-EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDGY-HVP 195 (296)
T ss_dssp SEEEEEESCTTC--H-HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCTTT-HHH
T ss_pred CeEEEEcCcCch--h-hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCCCC-CHH
Confidence 367777655322 2 6788999998865 23 44444433334677788888899988999999755543 334
Q ss_pred HHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcE
Q 008904 107 LSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGE 161 (549)
Q Consensus 107 va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~ 161 (549)
+...+...++.+|.+.. + .+. ...|.+..+..+-...+...++.+..-.|+.
T Consensus 196 v~~a~~e~Gv~viG~D~-~--~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 196 VVEAIKDQGDFAIGYVG-D--QADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHHTCEEEEEES-C--CSSSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHHcCCEEEEEec-c--hhhhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 44555667788887754 2 222 1234565555555555666666665556764
|
| >1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* | Back alignment and structure |
|---|
Probab=80.97 E-value=3.1 Score=40.35 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcch
Q 008904 149 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 228 (549)
Q Consensus 149 ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~ 228 (549)
.+.++++.++.+++.+|++.........+.+.+.+++.|+.+.....+.+. .+...+.+.++.+++.+++.||-.+.+
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 98 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGVFQNSGADYLIAIGGG 98 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 356777778889998888554332236788888898888876543334444 456778888888888889999876554
Q ss_pred --HHHHHHHHHHH
Q 008904 229 --RTGLMVFDVAQ 239 (549)
Q Consensus 229 --~~~~~il~~a~ 239 (549)
-++..++....
T Consensus 99 sv~D~aK~iA~~~ 111 (386)
T 1rrm_A 99 SPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 45666665544
|
| >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2 | Back alignment and structure |
|---|
Probab=80.85 E-value=5.7 Score=38.74 Aligned_cols=87 Identities=11% Similarity=0.118 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCcEEEEEEecCCccc-chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 149 AIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 149 ai~~~l~~~~W~~v~ii~~~~~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
.+.++++.++.+++.+|+++..... ...+.+.+.+++.|+.+.......+. .+...+...++.+++.++++||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567788889999999985343222 25788888888888876532222323 34677888888888899999987655
Q ss_pred h--HHHHHHHHH
Q 008904 228 S--RTGLMVFDV 237 (549)
Q Consensus 228 ~--~~~~~il~~ 237 (549)
+ -++.+++..
T Consensus 111 GsviD~AK~iA~ 122 (407)
T 1vlj_A 111 GSVVDSAKAVAA 122 (407)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 4 455555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 549 | ||||
| d1jdpa_ | 401 | c.93.1.1 (A:) Hormone binding domain of the atrial | 2e-38 | |
| d1ewka_ | 477 | c.93.1.1 (A:) Metabotropic glutamate receptor subt | 4e-38 | |
| d1dp4a_ | 425 | c.93.1.1 (A:) Hormone binding domain of the atrial | 5e-33 | |
| d1usga_ | 346 | c.93.1.1 (A:) Leucine-binding protein {Escherichia | 8e-16 | |
| d1qo0a_ | 373 | c.93.1.1 (A:) Amide receptor/negative regulator of | 5e-15 |
| >d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (360), Expect = 2e-38
Identities = 66/429 (15%), Positives = 134/429 (31%), Gaps = 57/429 (13%)
Query: 21 ALKPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRV----LGGRKLSITMHDA 73
AL P+ + V + + R A++ A + + G + + D+
Sbjct: 2 ALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDS 61
Query: 74 KFNG--FLSIMGALQFMETDTL-AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP 130
S++ + I+GP A ++ LA+ +P+LS AL
Sbjct: 62 DCGNRALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQH 121
Query: 131 --LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRC 188
+Y + AP + + + + W +++DD RN L +
Sbjct: 122 KDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQE 181
Query: 189 KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248
+ + S D+ T+ ++V+ RV+++ S T + VA R GM Y
Sbjct: 182 EGLHTSIYSFDE--TKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDY 239
Query: 249 VWIATTWLSTFIDSKSPL------SLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLS- 301
+ ++ + ++ T+ F +
Sbjct: 240 AFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVE 299
Query: 302 ----NGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALS 357
N +N + +D + + AL L G +
Sbjct: 300 KQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKK--------------------- 338
Query: 358 IFDGGKKFLANILQTNMTGLSGPIHFNQ--DRSLLHPSYDIINV--IEHGYPQQIGYWSN 413
G K + G++G + + DR + + +I + +E G + IG +
Sbjct: 339 ---DGGKIIQQTWNRTFEGIAGQVSIDANGDR---YGDFSVIAMTDVEAGTQEVIGDYFG 392
Query: 414 YSG-LSVVP 421
G + P
Sbjct: 393 KEGRFEMRP 401
|
| >d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Metabotropic glutamate receptor subtype 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 144 bits (363), Expect = 4e-38
Identities = 69/448 (15%), Positives = 157/448 (35%), Gaps = 95/448 (21%)
Query: 46 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTL------------ 93
AM D IN+DP +L L + D+ ++ +++ +++F+ +
Sbjct: 46 AMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGLNRC 105
Query: 94 -----------------AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPF 135
++GP S+ +A + +L +P ++++A LS Y +
Sbjct: 106 LPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY 165
Query: 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 195
F++ P+D A+ ++V + W V A+ + + G +G+ A + A+ I++
Sbjct: 166 FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDK 225
Query: 196 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255
+ + D ++ R+ +ARV+V T + +RLG++ + + W
Sbjct: 226 IYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGW 285
Query: 256 LSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGL-------- 307
+ G +T++ +P+ + D+ + +N
Sbjct: 286 ADRDEVIEGYEV-----EANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHR 340
Query: 308 -------------------------------NPYGLYAYDTVWMIARALKLFLDQGNTIS 336
+ + + ++ +A L
Sbjct: 341 FQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGL----------- 389
Query: 337 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYD 395
+ L G + L G+K L +++++ G+SG + F++ YD
Sbjct: 390 ---QNMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVGVSGEEVWFDEKGD-APGRYD 445
Query: 396 IINVIEHGYP----QQIGYWSNYSGLSV 419
I+N+ +G W L++
Sbjct: 446 IMNLQYTEANRYDYVHVGTWHE-GVLNI 472
|
| >d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 128 bits (322), Expect = 5e-33
Identities = 61/455 (13%), Positives = 140/455 (30%), Gaps = 77/455 (16%)
Query: 27 LNVGAIF----SFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-----NG 77
L V + + + A++ A + + P +L G + + + ++ +
Sbjct: 3 LTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSD 62
Query: 78 FLSIMGALQFMETD-TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-PLQYPF 135
+ + A+ +GP A + +VPLL+ A + +Y
Sbjct: 63 TAAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYAL 122
Query: 136 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 195
+T P+ + L + + GW + D G + + +R +
Sbjct: 123 TTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNIT 182
Query: 196 LPPDQSV-TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254
+ + V + D +L++ + RVI + + +A G+ YV+
Sbjct: 183 VNHQEFVEGDPDHYPKLLRAVRRKGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLD 242
Query: 255 WLSTFIDSKSPL------------SLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL-- 300
+ S L ++ A + PD+ +F+ + L
Sbjct: 243 VFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLAD 302
Query: 301 -----SNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGA 355
+ N +D + + +A+ L QG T++
Sbjct: 303 KKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVT------------------- 343
Query: 356 LSIFDGGKKFLANILQTNMTGLSGPIHFNQ--DRSLLHPSYDIINV-IEHGYPQQIGYWS 412
G+ + + G++G + ++ DR + + ++ E G + + ++
Sbjct: 344 -----DGENITQRMWNRSFQGVTGYLKIDRNGDR---DTDFSLWDMDPETGAFRVVLNYN 395
Query: 413 NYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGG 447
S + E + WP G
Sbjct: 396 GTSQELMAVSEH----------------KLYWPLG 414
|
| >d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Leucine-binding protein species: Escherichia coli [TaxId: 562]
Score = 76.7 bits (187), Expect = 8e-16
Identities = 48/382 (12%), Positives = 110/382 (28%), Gaps = 45/382 (11%)
Query: 25 EVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSI 81
+ + V + + G + + A DIN+ + G KL +D + ++
Sbjct: 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKG-DKLVGVEYDDACDPKQAV 59
Query: 82 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP 141
A + + ++G + S + + + ++S A +P L+ Y ++TA
Sbjct: 60 AVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAG 119
Query: 142 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS 201
D A+ + + IAI +D Q G+ +
Sbjct: 120 LDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG- 178
Query: 202 VTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261
E D + +++ + GY ++ +
Sbjct: 179 --EKDFSALIARLKKENIDFVYYGGYY-------PEMGQMLRQARSVGLKTQFMGPEGVG 229
Query: 262 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMI 321
+ S ++ + +T+ + + V G PY Y V +
Sbjct: 230 NASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSG--PYVWITYAAVQSL 287
Query: 322 ARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPI 381
A AL+ G+ + ++ + GP+
Sbjct: 288 ATALE--------------------RTGSDE---------PLALVKDLKANGANTVIGPL 318
Query: 382 HFNQDRSLLHPSYDIINVIEHG 403
++++ L + + G
Sbjct: 319 NWDEKGDLKGFDFGVFQWHADG 340
|
| >d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Amide receptor/negative regulator of the amidase operon (AmiC) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 74.3 bits (181), Expect = 5e-15
Identities = 44/371 (11%), Positives = 98/371 (26%), Gaps = 44/371 (11%)
Query: 29 VGAIFSF-GT--VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGAL 85
+G +FS G + R A + +N + V G R + D + + A
Sbjct: 4 IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGG-RPIETLSQDPGGDPDRYRLCAE 62
Query: 86 QFMETD-TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDL 144
F+ +VG + + + L T + P V P
Sbjct: 63 DFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFE---YSPNIVYGGPAPN 119
Query: 145 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTE 204
+ +A + V+ I +D R + + + + +P ++
Sbjct: 120 QNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYP--SD 177
Query: 205 TDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKS 264
D++ + ++ A V+ ++ R + T +
Sbjct: 178 DDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKME 237
Query: 265 PLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARA 324
+ + D+ R FV + + + + AY ++ RA
Sbjct: 238 S----DVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRA 293
Query: 325 LKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFN 384
+ G + ++ ++ GP+
Sbjct: 294 AQ--------------------AAGNWR---------VEDVQRHLYDIDIDAPQGPVRVE 324
Query: 385 -QDRSLLHPSY 394
Q+ S
Sbjct: 325 RQNNHSRLSSR 335
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| d1ewka_ | 477 | Metabotropic glutamate receptor subtype 1 {Rat (Ra | 100.0 | |
| d1dp4a_ | 425 | Hormone binding domain of the atrial natriuretic p | 100.0 | |
| d1jdpa_ | 401 | Hormone binding domain of the atrial natriuretic p | 100.0 | |
| d1usga_ | 346 | Leucine-binding protein {Escherichia coli [TaxId: | 100.0 | |
| d1qo0a_ | 373 | Amide receptor/negative regulator of the amidase o | 100.0 | |
| d3ckma1 | 317 | YraM C-terminal domain {Haemophilus influenzae [Ta | 99.93 | |
| d2a5sa1 | 277 | N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt | 99.47 | |
| d1mqia_ | 260 | Glutamate receptor ligand binding core {Rat (Rattu | 99.19 | |
| d1pb7a_ | 289 | N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt | 99.18 | |
| d2f34a1 | 246 | Glutamate receptor ligand binding core {Rat (Rattu | 99.12 | |
| d1wdna_ | 223 | Glutamine-binding protein {Escherichia coli [TaxId | 98.66 | |
| d1ii5a_ | 226 | Glutamate receptor ligand binding core {Synechocys | 98.63 | |
| d1lsta_ | 238 | Lysine-,arginine-,ornithine-binding (LAO) protein | 98.59 | |
| d1xt8a1 | 248 | Putative amino-acid transporter CjaA {Campylobacte | 98.39 | |
| d1jyea_ | 271 | Lac-repressor (lacR) core (C-terminal domain) {Esc | 98.08 | |
| d2fvya1 | 305 | Galactose/glucose-binding protein {Escherichia col | 97.97 | |
| d1jx6a_ | 338 | Quorum-sensing signal (autoinducer-2) binding prot | 97.96 | |
| d1dbqa_ | 282 | Purine repressor (PurR), C-terminal domain {Escher | 97.75 | |
| d8abpa_ | 305 | L-arabinose-binding protein {Escherichia coli [Tax | 97.61 | |
| d2nzug1 | 275 | Glucose-resistance amylase regulator CcpA, C-termi | 97.56 | |
| d2dria_ | 271 | D-ribose-binding protein {Escherichia coli, strain | 97.32 | |
| d1byka_ | 255 | Trehalose repressor, C-terminal domain {Escherichi | 97.18 | |
| d1guda_ | 288 | D-allose-binding protein {Escherichia coli [TaxId: | 97.07 | |
| d1tjya_ | 316 | AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370 | 95.9 | |
| d1vlja_ | 398 | NADH-dependent butanol dehydrogenase A (TM0820) {T | 90.64 | |
| d1rrma_ | 385 | Lactaldehyde reductase FucO {Escherichia coli [Tax | 89.72 | |
| d1o2da_ | 359 | Alcohol dehydrogenase TM0920 {Thermotoga maritima | 85.15 |
| >d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Metabotropic glutamate receptor subtype 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=7.5e-54 Score=439.20 Aligned_cols=376 Identities=20% Similarity=0.312 Sum_probs=313.3
Q ss_pred CCCceEEEEEEeccCCC-----------------CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHH
Q 008904 22 LKPEVLNVGAIFSFGTV-----------------NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGA 84 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~~-----------------~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~ 84 (549)
..+|+|.||++||+|.. .|.+...||.+|||+||+++.+|||++|++.++|+|+++..|++.+
T Consensus 5 ~~~Gd~~iGGlFp~h~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLPn~tLg~~i~Dtc~~~~~a~~~~ 84 (477)
T d1ewka_ 5 RMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQS 84 (477)
T ss_dssp EECCSEEEEEEECSBCCCCTTTGGGTCCCCBCTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHH
T ss_pred EcCCCEEEEEEEECcCcCCCCCCCccccccccccccHHHHHHHHHHHHHHhCCCCcCCCCEEEEEEEEcCCChHHHHHHH
Confidence 46899999999999621 2556788999999999999999999999999999999999999999
Q ss_pred HHHHh-----------------------------cCcEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCC
Q 008904 85 LQFME-----------------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYP 134 (549)
Q Consensus 85 ~~l~~-----------------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~ 134 (549)
.+++. .+|.|||||.+|..+.+++.++..++||+|+++++++.|++ .+||
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~~~yp 164 (477)
T d1ewka_ 85 IEFIRDSLISIRDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 164 (477)
T ss_dssp HHHHC-----------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCT
T ss_pred HHHHHhhhcccccccccccccccCCccccccccccceEEEECCCcchhHHHHHHHhhhccCceeccccCCccccccccCC
Confidence 99873 26899999999999999999999999999999999999998 5899
Q ss_pred ceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHH
Q 008904 135 FFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 214 (549)
Q Consensus 135 ~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l 214 (549)
+|||+.|++..+++|+++++++|+|++|++||+++++|+...+.|++.+++.|+||.....++.. ....++...++++
T Consensus 165 ~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~--~~~~~~~~~l~~l 242 (477)
T d1ewka_ 165 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSN--AGEKSFDRLLRKL 242 (477)
T ss_dssp TEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTT--CCHHHHHHHHHHH
T ss_pred ceEEecccchhhHHHHHHHHHHcCCcEEEEEEecchhHHHHHHHHHHHHHHcCcEEEEEeeccCC--CchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888765 5678899999999
Q ss_pred hcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccCCCCcCChhhHhhccceEEEeEecCCChhHHH
Q 008904 215 RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRD 292 (549)
Q Consensus 215 ~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 292 (549)
+++ +++|||+++....+..++++|.++||++ .+.|++++.|....... ........|.+++.+..+..+.+++
T Consensus 243 ~~~~~~~rVIv~~~~~~~~~~ll~~a~~~g~~g-~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~f~~ 317 (477)
T d1ewka_ 243 RERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDD 317 (477)
T ss_dssp HTTTTTCCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred hhhccCceEEEEecCHHHHHHHHHHHHHcCccC-CceEEEecccccchhhc----cccccccCcceEeeeccccchhHHH
Confidence 875 7899999999999999999999999985 47788888765432111 1122346677888888777777665
Q ss_pred HH---------------HHHHhhcCCC------------------------CCCCchhhhHhHHHHHHHHHHHHHHhcCC
Q 008904 293 FV---------------SRWNTLSNGS------------------------IGLNPYGLYAYDTVWMIARALKLFLDQGN 333 (549)
Q Consensus 293 f~---------------~~~~~~~~~~------------------------~~~~~~~~~~yDav~~~a~Al~~~~~~~~ 333 (549)
|. +.|+..|++. .....+++++||||+++|+||++++++.+
T Consensus 318 ~~~~~~~~~~~~n~~~~~~w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~ 397 (477)
T d1ewka_ 318 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 397 (477)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcCcccCCCChHHHHHHHHHhCCCcccccccCccccccccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 43 4476666421 01234678899999999999999987543
Q ss_pred CccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccce-eeEEccCCCCCCCceEEEEEee----CceeeEE
Q 008904 334 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVIE----HGYPQQI 408 (549)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG-~v~fd~~g~r~~~~~~I~~~~~----~~~~~~V 408 (549)
.. ....|....+++ ++.|.++|++++|.|++| +|.||++|++ .+.|+|+|++. ...+++|
T Consensus 398 ~~-------------~~~~~~~~~~~~-~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~-~~~y~I~n~q~~~~~~~~~~~V 462 (477)
T d1ewka_ 398 PG-------------HVGLCDAMKPID-GRKLLDFLIKSSFVGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHV 462 (477)
T ss_dssp TT-------------CSSCCGGGSSCC-HHHHHHHHHTCEEECTTSCEEECCTTSCC-CCCEEEEEEEECSSSCEEEEEE
T ss_pred CC-------------CCCcccCCCcCC-HHHHHHHHhcCeeECCCCCEEEECCCCCc-cceEEEEEEEECCCCcEEEEEE
Confidence 21 123465555565 999999999999999999 5999999997 58899999972 2345999
Q ss_pred eEeeCCCCCccc
Q 008904 409 GYWSNYSGLSVV 420 (549)
Q Consensus 409 G~w~~~~~l~~~ 420 (549)
|.|++. .|.++
T Consensus 463 G~w~~~-~l~i~ 473 (477)
T d1ewka_ 463 GTWHEG-VLNID 473 (477)
T ss_dssp EEEETT-EEEEC
T ss_pred EEEeCC-Ccccc
Confidence 999864 35544
|
| >d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=9.7e-48 Score=388.99 Aligned_cols=385 Identities=15% Similarity=0.205 Sum_probs=307.3
Q ss_pred eEEEEEEeccCCC----CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCC-----ChHHHHHHHHHHHh-cCcEEE
Q 008904 26 VLNVGAIFSFGTV----NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-----NGFLSIMGALQFME-TDTLAI 95 (549)
Q Consensus 26 ~i~IG~l~~~~~~----~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~-----~~~~a~~~~~~l~~-~~v~ai 95 (549)
+|+||+++|++.. .|.....|+++|+++||+++++|+|++|+++++|+++ ++..++..+++++. ++|.+|
T Consensus 2 ~i~vg~~lPltg~~~~~~~~~~~~A~~lAv~~IN~~~~~l~g~~l~~~~~D~~~~~~~~~~~~~~~~a~~~~~~~~V~ai 81 (425)
T d1dp4a_ 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF 81 (425)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred cEEEEEEECCCCcccccchhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEECCCcccccCHHHHHHHHHHHHhcCCCeEE
Confidence 6999999999743 2566788999999999999999999999999999974 67788888888875 499999
Q ss_pred EcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccc
Q 008904 96 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRN 174 (549)
Q Consensus 96 iGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~ 174 (549)
|||.+|..+.++++++..+++|+|+++++++.+++ ..||++||+.|++..++.++++++++++|++|++++.++++|..
T Consensus 82 iG~~~S~~~~~v~~~~~~~~ip~is~~st~~~ls~~~~~~~~~r~~p~~~~~~~~~~~~l~~~~~~~vaii~~~d~~g~~ 161 (425)
T d1dp4a_ 82 LGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDD 161 (425)
T ss_dssp ECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSC
T ss_pred ECCCChHHhhhhhhhhHhhCCeEEeeecccccccccccCCccccccccchHHHHHHHHHHHhccCceEEEEEeccccccc
Confidence 99999999999999999999999999999999987 57999999999999999999999999999999999999999875
Q ss_pred hHH------HHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCe
Q 008904 175 GVT------ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 248 (549)
Q Consensus 175 ~~~------~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~ 248 (549)
... .+.....+.++++......+.. .+++...++.++. .+++|++.+..+++..++++|+++|+..+.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~~ 236 (425)
T d1dp4a_ 162 RPCFFIVEGLYMRVRERLNITVNHQEFVEGD----PDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDY 236 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHCCEEEEEEECTTC----GGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTC
T ss_pred hhhHHHHHHHHHHHHHhcceEEeeeeecCCc----hhHHHHHHHHhhh-cceeEEEecchhHHHHHHHHHHHhCCCCCce
Confidence 432 2333445556777776655533 6677777766654 5778888899999999999999999999999
Q ss_pred EEEEeCCcccccCCC------------CcCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhc----C---CCCCCCc
Q 008904 249 VWIATTWLSTFIDSK------------SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLS----N---GSIGLNP 309 (549)
Q Consensus 249 ~~i~~~~~~~~~~~~------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~----~---~~~~~~~ 309 (549)
+||..+.+....... +........+..+++.+.+..+..+.+++|.+.+++.+ + ....++.
T Consensus 237 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (425)
T d1dp4a_ 237 VFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNI 316 (425)
T ss_dssp EEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGGGH
T ss_pred EEEEecccccccccccccccccceeeccchhhHHHHHHhheeeeccCCCCChHHHHHHHHHHHHhhccCCCCccccccch
Confidence 999988654322110 11113444677888888888888898888887765432 2 1234567
Q ss_pred hhhhHhHHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCC
Q 008904 310 YGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSL 389 (549)
Q Consensus 310 ~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r 389 (549)
+++++||||+++|+|+++++.++.. +.++..|.++|++++|+|++|+|.||++|+|
T Consensus 317 ~~~~~yDav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~G~tG~v~fd~nGdr 372 (425)
T d1dp4a_ 317 IPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNGDR 372 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTSBB
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC------------------------CCCHHHHHHHHhCCeEecCCeeEEECCCCCc
Confidence 8889999999999999999876532 1258999999999999999999999999998
Q ss_pred CCCceEEEEEe-eCceeeEEeEeeCCCCCcccCCcccccCCCCCCCCcccceeeEeCCCCcCCCcccc
Q 008904 390 LHPSYDIINVI-EHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWV 456 (549)
Q Consensus 390 ~~~~~~I~~~~-~~~~~~~VG~w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~ 456 (549)
.+.|.|++++ .++.++.||.|++.++.. ...+.+.|.||++..+...+.|
T Consensus 373 -~~~y~i~~~~~~~~~~~~vg~~~~~~~~~----------------~~~~~~~i~W~~~~~P~d~p~c 423 (425)
T d1dp4a_ 373 -DTDFSLWDMDPETGAFRVVLNYNGTSQEL----------------MAVSEHKLYWPLGYPPPDVPKC 423 (425)
T ss_dssp -CCCEEEEEECTTTCCEEEEEEECTTTCCE----------------EESTTCCCCCTTSSCCCSSCTT
T ss_pred -ccceEEEEEECCCCeEEEEEEEECCCCeE----------------EecCCceeECCCCCCCCCCCCC
Confidence 5889999997 344559999999765311 1122357999998744433333
|
| >d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-44 Score=359.20 Aligned_cols=365 Identities=16% Similarity=0.210 Sum_probs=293.2
Q ss_pred CCCceEEEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCC----CCCceEEEEEecCCCChHHHHHHHHHHHh---cC
Q 008904 22 LKPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRV----LGGRKLSITMHDAKFNGFLSIMGALQFME---TD 91 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~i----l~g~~l~~~~~d~~~~~~~a~~~~~~l~~---~~ 91 (549)
..+++|+||+++|++. ..|.....|+++|+++||+++++ ++|++|++++.|+++++..+.+.+.++.. .+
T Consensus 3 ~~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~~~ 82 (401)
T d1jdpa_ 3 LPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAK 82 (401)
T ss_dssp CCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTTCC
T ss_pred CCCCccEEEEEECCCCchhhhhHHHHHHHHHHHHHHHhcCCccccCCCCcEEEEEEEeCCCCHHHHHHHHHHHHHhccCC
Confidence 3578999999999984 44677889999999999999875 46899999999999999988888887753 48
Q ss_pred cEEEEcCCCchHHHHHHHhhhhcCCcEEecccCCCCCCC--CCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecC
Q 008904 92 TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 169 (549)
Q Consensus 92 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~--~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~ 169 (549)
|.+||||.+|..+.++++++..+++|+|+++++++.+++ ..||++||+.|++..+++++++++++++|++|++||+++
T Consensus 83 v~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~~d 162 (401)
T d1jdpa_ 83 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 162 (401)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred cEEEECCCCcchhHHHHHHHHhcCCceeeccccccccccccccCCeEEEeccchHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 999999999999999999999999999999998888876 468999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHh---hcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCC
Q 008904 170 DQGRNGVTALGDKLA---EIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 246 (549)
Q Consensus 170 ~~g~~~~~~l~~~~~---~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~ 246 (549)
+||+.....+....+ ..+..+......+.. ..+....++.+ ...+++|++++.......+++++.+.|+...
T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~iv~~~~~~~~~~i~~~~~~~g~~~~ 237 (401)
T d1jdpa_ 163 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNI-QASERVVIMCASSDTIRSIMLVAHRHGMTSG 237 (401)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHH-HHHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred cccchHHHHHHHHHHHhccceEEEEeeccccCc----hhHHHHHHHhh-ccCceeEEEEechHHHHHHHHHHHHhCCCCC
Confidence 999987665555444 344455444333322 34444555544 4567888889999999999999999999999
Q ss_pred CeEEEEeCCcccccCCCC------cCChhhHhhccceEEEeEecCCChhHHHHHHHHHhhcCC-----CCCCCchhhhHh
Q 008904 247 GYVWIATTWLSTFIDSKS------PLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG-----SIGLNPYGLYAY 315 (549)
Q Consensus 247 ~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~y 315 (549)
+|+||.++.+........ .........+.++..+....+..+.+++|.++|++.+.. ...++.+++.+|
T Consensus 238 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~y 317 (401)
T d1jdpa_ 238 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFH 317 (401)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHH
T ss_pred CeEEEeecccccccccCchhhccccchhHHHHHhhheeeccccCCCChHHHHHHHHHHHHHhhcCCCccccccHHHHHHH
Confidence 999999886543221111 011233456778888888888889999999998876642 234677889999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccCCccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceE
Q 008904 316 DTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYD 395 (549)
Q Consensus 316 Dav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~ 395 (549)
|||+++++|++++++++.. +.++..+.++|++++|+|++|+|.||++|+| ...|.
T Consensus 318 Dav~l~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~G~tG~v~fd~~Gdr-~~~~~ 372 (401)
T d1jdpa_ 318 DAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGDFS 372 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCEEE
T ss_pred HHHHHHHHHHHHHHhcCCC------------------------CCCHHHHHHHHhCCeEEcCceEEEECCCCCc-cCcEE
Confidence 9999999999998765432 2258899999999999999999999999997 58899
Q ss_pred EEEEe--eCceeeEEeEeeCCCC
Q 008904 396 IINVI--EHGYPQQIGYWSNYSG 416 (549)
Q Consensus 396 I~~~~--~~~~~~~VG~w~~~~~ 416 (549)
+++++ .+|.|+.||.|+..+|
T Consensus 373 ~~~~~~~~~g~~~~Vg~~~~~~~ 395 (401)
T d1jdpa_ 373 VIAMTDVEAGTQEVIGDYFGKEG 395 (401)
T ss_dssp EEEEEETTTTEEEEEEEEETTTT
T ss_pred EEEEEECCCCEEEEEEEEECCCc
Confidence 98876 3566699999998764
|
| >d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Leucine-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-39 Score=317.20 Aligned_cols=336 Identities=14% Similarity=0.170 Sum_probs=286.9
Q ss_pred ceEEEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCc
Q 008904 25 EVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 101 (549)
Q Consensus 25 ~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s 101 (549)
++|+||+++|++. ..|....+++++|+++||++++++ |++|+++++|++++|..+++++.++++++++++|||.++
T Consensus 1 d~I~IG~~~plsG~~a~~G~~~~~g~~lav~~iN~~ggi~-G~~i~lv~~D~~~~p~~a~~~~~~li~~~~~~vig~~~s 79 (346)
T d1usga_ 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIK-GDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCchHHhHHHHHHHHHHHHHHHHHcCCCC-CcEEEEEEecCCCCHHHHHHHHHHHHhcCCccccCCccC
Confidence 5799999999984 446778999999999999999996 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHH-HHHcCCcEEEEEEecCCcccchHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM-VSYFGWGEVIAIFNDDDQGRNGVTALG 180 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~-l~~~~W~~v~ii~~~~~~g~~~~~~l~ 180 (549)
..+.++++++..+++|+++++++++.+....++++||+.|++..+...+.++ .++++|+++++++.+++||....+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~g~~~~~~~~ 159 (346)
T d1usga_ 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred ccchhhhhhhhhccccccccccCChhhhccCccccccccccchhHHHHHHhhhhhccccceeEEecCchhhhHHHHHHHh
Confidence 9999999999999999999999888887767899999999999999998887 556789999999999999999999999
Q ss_pred HHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCccccc
Q 008904 181 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 260 (549)
Q Consensus 181 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 260 (549)
+.+++.|+++.....++.. ..++...+.+++.+++++|++.+.......++++++++|+.. .++........
T Consensus 160 ~~~~~~g~~i~~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~- 231 (346)
T d1usga_ 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKT---QFMGPEGVGNA- 231 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGGCCT-
T ss_pred hhhhcccceEEEEEecCcc----ccchhhHHHHhhccCCCEEEEeccchhhhheeeccccccccc---eEEeeeeccCc-
Confidence 9999999999988888755 668889999999999999999999999999999999999753 34444322211
Q ss_pred CCCCcCChhhHhhccceEEEeEecC-CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 261 DSKSPLSLKTAKSILGALTLRQHTP-DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.. .........|.+...+... ..+..+.|.+.|++.++ ..+..++...|||+++++.|++++...
T Consensus 232 ~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~a~~~Yda~~~la~Al~~ags~-------- 297 (346)
T d1usga_ 232 SL----SNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK--DPSGPYVWITYAAVQSLATALERTGSD-------- 297 (346)
T ss_dssp TH----HHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_pred ch----hhhhhccccceeeecccCCCcCchhhHHHHHHHHHhC--CCCCchHHHHHHHHHHHHHHHHHHCCC--------
Confidence 11 0233456677776655433 34667889999998876 566778999999999999999986210
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCce
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGY 404 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~ 404 (549)
++..|.++|+++.|+|++|+++||++|++....|.|++|+.+|.
T Consensus 298 ---------------------d~~~l~~al~~~~~~g~~G~v~fd~~Gd~~~~~~~v~q~~~dG~ 341 (346)
T d1usga_ 298 ---------------------EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGS 341 (346)
T ss_dssp ---------------------CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSC
T ss_pred ---------------------CHHHHHHHHHhCCCccceEEEEECCCcCcCCCCEEEEEEEcCCe
Confidence 37889999999999999999999999998788899999976554
|
| >d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Amide receptor/negative regulator of the amidase operon (AmiC) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.4e-36 Score=300.63 Aligned_cols=341 Identities=13% Similarity=0.079 Sum_probs=279.6
Q ss_pred eEEEEEEeccCC---CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcCCCc
Q 008904 26 VLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSA 101 (549)
Q Consensus 26 ~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~-~v~aiiGp~~s 101 (549)
+| ||+++|++. ..|...+.|+++|+++||++||++ |++|+++++|+++++..+++.+.+|+.+ +|.+|||+.+|
T Consensus 2 pv-IG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S 79 (373)
T d1qo0a_ 2 PL-IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMS 79 (373)
T ss_dssp CE-EEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSH
T ss_pred CE-EEEEcCCcCchhhhhHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEEcCCCCHHHHHHHHHHHHhhCCceEEEechhh
Confidence 55 999999984 457888999999999999999996 9999999999999999999999999865 99999999999
Q ss_pred hHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHH
Q 008904 102 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 181 (549)
Q Consensus 102 ~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~ 181 (549)
..+.+++++++..++|+++.++... ....+++||+.|++..++.++++++.+.+|+++++++.|+.||....+.+.+
T Consensus 80 ~~~~av~~~~~~~~vp~i~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~ 156 (373)
T d1qo0a_ 80 HTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRH 156 (373)
T ss_dssp HHHHHHHHHHHHHTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhCCcEEecccccc---cccCCceeeeccChHHHHHHHHHHHHhccCceeeeccCCccccHHHHhhhhh
Confidence 9999999999999999998644332 1346899999999999999999999999999999999999999999999999
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccccC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 261 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 261 (549)
.+++.|++|+....++.. ....|+...+.++++.++++|++.+...+...+++++.+.+.......+...........
T Consensus 157 ~~~~~G~~vv~~~~~~~~--~~~~d~~~~~~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 234 (373)
T d1qo0a_ 157 LYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVA 234 (373)
T ss_dssp HHHTTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCSTTHHHHHHHHHHHHCSSCCCCEEESSCCHHHHT
T ss_pred hhhcccCceeEEEEccCc--cccchhHHHHHHHHhhCCCceeeccccchHHHHHHHHHHhcCccccccccccccchHHHh
Confidence 999999999876655543 458899999999999999999999999999999999888776544443333332222211
Q ss_pred CCCcCChhhHhhccceEEEeEecC--CChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 262 SKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 262 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
. .......|.+....+.+ +.+..++|.++|+++++....++.++...||+++++++|++++..
T Consensus 235 ~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~aY~a~~~~a~Ai~~ag~--------- 299 (373)
T d1qo0a_ 235 K------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGN--------- 299 (373)
T ss_dssp T------SCHHHHTTCEEEESCCTTCCSHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHHHHHHTS---------
T ss_pred h------hhhhhhcCceeecccccccchHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHhCC---------
Confidence 1 12346677777665433 567889999999999975555677888999999999999998621
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEE
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 408 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~V 408 (549)
. ++..|.++|++++|+|.+|+|+|++++++......|.+++.+|.+..|
T Consensus 300 -------------------~-d~~~i~~aL~~~~~~~~~G~i~f~~~~~~~~~~~~i~q~~~dg~~~vv 348 (373)
T d1qo0a_ 300 -------------------W-RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVR 348 (373)
T ss_dssp -------------------C-CHHHHHHHHSSCCEEETTEEEEECTTTSBEEBCCEEEEECTTSCEEEE
T ss_pred -------------------C-CHHHHHHHHhcCceeCCceeEEEcCCCCcccCceEEEEEccCCcEEEE
Confidence 1 488999999999999999999999876555555666666655443444
|
| >d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: YraM C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.93 E-value=2.1e-25 Score=214.77 Aligned_cols=308 Identities=10% Similarity=0.062 Sum_probs=225.1
Q ss_pred EEEEEeccCCC---CchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHH
Q 008904 28 NVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 104 (549)
Q Consensus 28 ~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~ 104 (549)
|||+++|++.. .|...+.++++|++ +++++++++|+++++..++ ...+..++|.+||||.+|..+
T Consensus 2 kIG~~lPlSG~~a~~G~~~~~g~~lA~~----------~~~i~l~~~D~~~~~~~aa--~~~l~~~~v~~iiGp~~s~~~ 69 (317)
T d3ckma1 2 QIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQNL 69 (317)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHhcC----------CCCceEEEEcCCCCHHHHH--HHHHHHcCCeEEEEcccccch
Confidence 69999999854 47788999999864 4678999999999986553 345566799999999999877
Q ss_pred HHHHH-hhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHH
Q 008904 105 HVLSH-LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 183 (549)
Q Consensus 105 ~~va~-~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~ 183 (549)
.+++. ..+...+|+++.++++.. ...+++||+.|++..++.++++++...+|++|++++.+++||....+.+.+.+
T Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~la~~~~~~g~k~vail~~~~~~g~~~~~~~~~~~ 146 (317)
T d3ckma1 70 DVILADPAQIQGMDVLALNATPNS---RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (317)
T ss_dssp HHHHHCGGGGTTCEEEESCCCTTC---CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCceEEeccccccc---ccccceEEeccCCHHHHHHHHhhhhhcccceeEEeccccccchhHHHHHHHHH
Confidence 77555 556666777765433321 24588999999999999999999999999999999999999999999999999
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCCcccc-cCC
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF-IDS 262 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~-~~~ 262 (549)
++.|++|.....++.. ..+ ......+..+++++++...+..+..+++++...++. ..++..+..... ...
T Consensus 147 ~~~G~~v~~~~~~~~~----~~~--~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~ 217 (317)
T d3ckma1 147 QQLAGTDANIRYYNLP----ADV--TYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPN---LAIYASSRASASATNT 217 (317)
T ss_dssp HHHHSSCCEEEEESST----THH--HHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTT---CEEEECGGGCCHHHHT
T ss_pred HHcCCEEEEEEecccc----chh--hhhhhhcccCcceEEEecChhHHHHHHHHHHHhccc---cceeeccccccCcccc
Confidence 9999999888777644 333 345566778899999999999999999998877754 234444322211 111
Q ss_pred CCcCChhhHhhccceEEEeEe---cCCChhHHHHHHHHHhhcCCCCCCCchhhhHhHHHHHHHHHHHHHHhcCCCccccC
Q 008904 263 KSPLSLKTAKSILGALTLRQH---TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 339 (549)
Q Consensus 263 ~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 339 (549)
.........|++..... .+..+....|.+.|+..++ ...+.++.|||+.+++++.+.
T Consensus 218 ----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~gyDa~~l~~~~~~~------------ 277 (317)
T d3ckma1 218 ----NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----LMRLYAMGADAWLLINQFNEL------------ 277 (317)
T ss_dssp ----CHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----HHHHHHHHHHHHHHHHTHHHH------------
T ss_pred ----chhhhhhhcCcEEecccccCCCCCHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHHHHHH------------
Confidence 02334456666655432 3456677777777665443 223567899998887654332
Q ss_pred CccccCCCCCccccCCccccCchHHHHHHHHhccccccceeeEEccCCCCCCCceEEEEEeeCceeeEE
Q 008904 340 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 408 (549)
Q Consensus 340 ~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~tG~v~fd~~g~r~~~~~~I~~~~~~~~~~~V 408 (549)
+.+.+..|+|++|.++||++|+. ...+.+++++++.+ ++|
T Consensus 278 ---------------------------~~~~~~~~~G~tG~~~fd~~G~~-~r~~~~~~~~~G~~-vp~ 317 (317)
T d3ckma1 278 ---------------------------RQVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAI-VPV 317 (317)
T ss_dssp ---------------------------HHSTTCCEEETTEEEEECTTCBE-EEECEEEEEETTEE-EEC
T ss_pred ---------------------------hccCCCCeecCeEEEEECCCCCE-eecceEEEEECCEE-eEC
Confidence 11223468999999999999974 56778888876544 654
|
| >d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: N-methyl-D-aspartate receptor subunit 1 species: Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]
Probab=99.47 E-value=1.1e-14 Score=135.75 Aligned_cols=64 Identities=16% Similarity=0.336 Sum_probs=60.3
Q ss_pred cceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC----CCCChHHHHHhHhcCcccEEecceEEeecccC
Q 008904 484 TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----KNPTYSELINQITTGVSRILTKKVAQLTRVSL 549 (549)
Q Consensus 484 ~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~----~~g~~~gl~~~l~~~~~d~~~~~~ti~~~r~~ 549 (549)
.++++||||||+++||++|||+ |+++.++||+ .+++|++|+++|.+|++||+++++|||++|+.
T Consensus 50 ~~~~~G~~iDl~~~ia~~lg~~--~e~~~v~~~~~g~~~~~~w~~~l~~l~~g~~Di~i~~~tit~eR~~ 117 (277)
T d2a5sa1 50 KKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSE 117 (277)
T ss_dssp EEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHT
T ss_pred ccceeeeHHHHHHHHHHHhCCC--EEEEEccCCCcCccCCCCHHHHHhhhhcccEEEEEEccEeehhhhh
Confidence 5689999999999999999999 9999999987 57899999999999999999999999999974
|
| >d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Glutamate receptor ligand binding core species: Rat (Rattus norvegicus), GluR2 [TaxId: 10116]
Probab=99.19 E-value=4.2e-12 Score=116.83 Aligned_cols=87 Identities=15% Similarity=0.302 Sum_probs=72.5
Q ss_pred CCeEEEeecCcccccccEE---eecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC------CCCChHHHHHhHhc
Q 008904 461 GRQLRIGVPNRVSYRDFVF---KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITT 531 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~---~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~------~~g~~~gl~~~l~~ 531 (549)
+|+++|++..++||..+.. ...++++++||||||++++++.||++ |+++.+++++ ....|+.++..|.+
T Consensus 1 ~~t~~v~t~~~pPf~~~~~~~~~~~~~~k~~G~~idl~~~ia~~lg~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~l~~ 78 (260)
T d1mqia_ 1 NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVY 78 (260)
T ss_dssp CCCEEEEECCBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHHHHT
T ss_pred CeEEEEEEcccCCceEEccCccccCCCCCeEEEHHHHHHHHHHHhCCC--eEEEecCCCccceeccccccHHHHHHhhhc
Confidence 4789999866666643211 12456789999999999999999999 9999998754 45789999999999
Q ss_pred CcccEEecceEEeecccC
Q 008904 532 GVSRILTKKVAQLTRVSL 549 (549)
Q Consensus 532 ~~~d~~~~~~ti~~~r~~ 549 (549)
|++|++++++|+|++|+.
T Consensus 79 G~~D~~~~~~t~T~eR~~ 96 (260)
T d1mqia_ 79 GKADIAIAPLTITLVREE 96 (260)
T ss_dssp TSCSEECSSCBCCHHHHT
T ss_pred CcHHHHHhhhcCcHHHHh
Confidence 999999999999999974
|
| >d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: N-methyl-D-aspartate receptor subunit 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=4.5e-12 Score=118.57 Aligned_cols=84 Identities=12% Similarity=0.310 Sum_probs=66.5
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC----------CCCChHHHHHhHh
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----------KNPTYSELINQIT 530 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~----------~~g~~~gl~~~l~ 530 (549)
.+.+++++.. .++|+.... .+++++||||||+++||+.|||+ |++++++||. .+++|++++++|.
T Consensus 37 ~~~~~~~~~~--~~pp~~~~~-~~~~~~G~~vDl~~~ia~~lg~~--~e~~~v~~~~~g~~~~~~~~~~~~w~~~~~~l~ 111 (289)
T d1pb7a_ 37 KKVICTGPND--TSPGSPRHT-VPQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELL 111 (289)
T ss_dssp CCEEEEEEC----------CE-EEEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHH
T ss_pred CceEEeeccC--CCCCccccC-CCCceEEEhHHHHHHHHHHhCCc--EEEEEccccccccccccccccccChhHhhhhhh
Confidence 4677777654 444554433 36789999999999999999999 9999999875 3468999999999
Q ss_pred cCcccEEecceEEeecccC
Q 008904 531 TGVSRILTKKVAQLTRVSL 549 (549)
Q Consensus 531 ~~~~d~~~~~~ti~~~r~~ 549 (549)
+|++||+++++++|++|+.
T Consensus 112 ~g~~Di~~~~~s~t~eR~~ 130 (289)
T d1pb7a_ 112 SGQADMIVAPLTINNERAQ 130 (289)
T ss_dssp HTSCSEECSSCBCCHHHHT
T ss_pred hhheeEEeeccccCHHHHH
Confidence 9999999999999999963
|
| >d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Glutamate receptor ligand binding core species: Rat (Rattus norvegicus), GluR5 [TaxId: 10116]
Probab=99.12 E-value=1.3e-11 Score=112.18 Aligned_cols=85 Identities=14% Similarity=0.273 Sum_probs=71.6
Q ss_pred eEEEeecCcccccccEEe---ecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCC-----CCCChHHHHHhHhcCcc
Q 008904 463 QLRIGVPNRVSYRDFVFK---VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH-----KNPTYSELINQITTGVS 534 (549)
Q Consensus 463 ~~~v~~~~~~~~~~~~~~---~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~-----~~g~~~gl~~~l~~~~~ 534 (549)
||+|+|..++||...... ..|+++++||||||+++++++||++ ++++.++.+. ..++|++++..|..|++
T Consensus 1 t~~v~t~~~~Py~~~~~~~~~~~~n~~~~G~~iDl~~~ia~~lg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 78 (246)
T d2f34a1 1 TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFL--YDVKLVPDGKYGAQNDKGEWNGMVKELIDHRA 78 (246)
T ss_dssp EEEEEECCBTTTBEECSCCSCCCGGGGEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHHHHHHTTSC
T ss_pred CEEEEecccCCCEEEccCCCccCCCCceEEeHHHHHHHHHHHhCCC--eEEEeccccccccccccCchhhhhhhhhhccc
Confidence 578888766666543211 2367899999999999999999999 9999998765 56799999999999999
Q ss_pred cEEecceEEeecccC
Q 008904 535 RILTKKVAQLTRVSL 549 (549)
Q Consensus 535 d~~~~~~ti~~~r~~ 549 (549)
|++++++++|++|+.
T Consensus 79 D~~i~~~~~t~~R~~ 93 (246)
T d2f34a1 79 DLAVAPLTITYVREK 93 (246)
T ss_dssp SEECSSCBCCHHHHT
T ss_pred cEEEeccccchhhhh
Confidence 999999999999963
|
| >d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Glutamine-binding protein species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=1e-08 Score=91.08 Aligned_cols=72 Identities=19% Similarity=0.363 Sum_probs=63.8
Q ss_pred EEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecceEE
Q 008904 464 LRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKVAQ 543 (549)
Q Consensus 464 ~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ti 543 (549)
|+|++.. .|+||.+.. ++.++||++|+++++++.+|++ ++++.. +|+.++..|.+|++|++++++++
T Consensus 2 l~v~~~~--~~pP~~~~~--~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-------~~~~~~~~l~~g~~D~~~~~~~~ 68 (223)
T d1wdna_ 2 LVVATDT--AFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLD--YELKPM-------DFSGIIPALQTKNVDLALAGITI 68 (223)
T ss_dssp EEEEEES--SBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEEE-------CGGGHHHHHHTTSSSEEEEEEEC
T ss_pred EEEEeCC--CCCCeEEcc--CCeEEEHHHHHHHHHHHHhCCc--EEEEec-------CHHHHHhhhhhccceeeeccccc
Confidence 6777743 577887654 4779999999999999999999 999999 99999999999999999999999
Q ss_pred eeccc
Q 008904 544 LTRVS 548 (549)
Q Consensus 544 ~~~r~ 548 (549)
|++|+
T Consensus 69 ~~~r~ 73 (223)
T d1wdna_ 69 TDERK 73 (223)
T ss_dssp CHHHH
T ss_pred chhhh
Confidence 99986
|
| >d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Glutamate receptor ligand binding core species: Synechocystis sp., GluR0 [TaxId: 1143]
Probab=98.63 E-value=1.6e-08 Score=89.97 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=62.5
Q ss_pred CCeEEEeecCcccccccEEeec-CcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEec
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVN-GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTK 539 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~ 539 (549)
.++|||++... +||..... .++.++||++|+++++++.+|++ ++++.. .+|+.++.+|.+|++|++++
T Consensus 3 a~~lrVg~~~~---pP~~~~~~~~~g~~~G~~~dl~~~ia~~~g~~--~~~v~~------~~~~~~~~~l~~G~~D~~~~ 71 (226)
T d1ii5a_ 3 AMALKVGVVGN---PPFVFYGEGKNAAFTGISLDVWRAVAESQKWN--SEYVRQ------NSISAGITAVAEGELDILIG 71 (226)
T ss_dssp SCCEEEEECCC---TTTCEEC-----CEESHHHHHHHHHHHHHTCC--EEEEEC------SCHHHHHHHHHTTSCSEEEE
T ss_pred CCCEEEEEeCC---CCCeEeecCCCCcEEEHHHHHHHHHHHHhCCC--eEEEEc------CCHHHHHHHHhcCCcccccc
Confidence 47899998554 45544432 46789999999999999999999 998754 27999999999999999999
Q ss_pred ceEEeeccc
Q 008904 540 KVAQLTRVS 548 (549)
Q Consensus 540 ~~ti~~~r~ 548 (549)
++++|++|+
T Consensus 72 ~~~~t~~r~ 80 (226)
T d1ii5a_ 72 PISVTPERA 80 (226)
T ss_dssp EEECCHHHH
T ss_pred cccchhhhh
Confidence 999999985
|
| >d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Lysine-,arginine-,ornithine-binding (LAO) protein species: Salmonella typhimurium [TaxId: 90371]
Probab=98.59 E-value=1.6e-08 Score=90.80 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=66.9
Q ss_pred CeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhCCCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEEecce
Q 008904 462 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVSRILTKKV 541 (549)
Q Consensus 462 ~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~~~~~ 541 (549)
++|||++.. .|+||.+.. ++++.+||++||++++++.+|++ ++++.+ +|...+..|..|++|++++++
T Consensus 4 ~tl~v~~~~--~~pP~~~~d-~~G~~~G~~~dl~~~ia~~lg~~--~~~~~~-------~~~~~~~~l~~g~~d~~~~~~ 71 (238)
T d1lsta_ 4 QTVRIGTDT--TYAPFSSKD-AKGEFIGFDIDLGNEMCKRMQVK--CTWVAS-------DFDALIPSLKAKKIDAIISSL 71 (238)
T ss_dssp SEEEEEECS--CBTTTBEEC-TTCCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHTTSCSEECSSC
T ss_pred CEEEEEECC--CCCCeeEEC-CCCCEEEhHHHHHHHHHHHhCCc--eEEeec-------hHHHHHHHHHhcccceeeccc
Confidence 679999843 577887654 46789999999999999999999 999999 999999999999999999999
Q ss_pred EEeeccc
Q 008904 542 AQLTRVS 548 (549)
Q Consensus 542 ti~~~r~ 548 (549)
++|++|.
T Consensus 72 ~~~~~r~ 78 (238)
T d1lsta_ 72 SITDKRQ 78 (238)
T ss_dssp BCCHHHH
T ss_pred chhhhhh
Confidence 9999985
|
| >d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Putative amino-acid transporter CjaA species: Campylobacter jejuni [TaxId: 197]
Probab=98.39 E-value=1.2e-07 Score=85.39 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=66.6
Q ss_pred CCeEEEeecCcccccccEEeecCcceeeeeeHHHHHHHHHhC---CCCcCEEEEECCCCCCCCChHHHHHhHhcCcccEE
Q 008904 461 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVSRIL 537 (549)
Q Consensus 461 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~G~~idl~~~~~~~l---~~~~~~~~~~~~dg~~~g~~~gl~~~l~~~~~d~~ 537 (549)
.++|+|++.. .|+||.+.. .++...||++||++++|+.| +++ ++++++ +|+.+...|.+|+.|++
T Consensus 10 ~g~l~v~v~~--~~pP~~~~~-~~g~~~G~~~Dl~~~ia~~l~~~~~~--i~~~~~-------~~~~~~~~l~~g~~d~~ 77 (248)
T d1xt8a1 10 NGVVRIGVFG--DKPPFGYVD-EKGNNQGYDIALAKRIAKELFGDENK--VQFVLV-------EAANRVEFLKSNKVDII 77 (248)
T ss_dssp HSSEEEEECS--EETTTEEEC-TTSCEESHHHHHHHHHHHHHHSCTTC--EEEEEC-------CGGGHHHHHHTTSCSEE
T ss_pred CCEEEEEEcC--CCCCceEEC-CCCCEeEHHHHHHHHHHHHhcCCCce--eeeeee-------cccccccccccCccccc
Confidence 4679999754 577887654 46789999999999999998 566 999999 99999999999999999
Q ss_pred ecceEEeecccC
Q 008904 538 TKKVAQLTRVSL 549 (549)
Q Consensus 538 ~~~~ti~~~r~~ 549 (549)
++++++|.+|+.
T Consensus 78 ~~~~~~t~~R~~ 89 (248)
T d1xt8a1 78 LANFTQTPQRAE 89 (248)
T ss_dssp CSSCBCCHHHHT
T ss_pred ccccccchhhhc
Confidence 999999999863
|
| >d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Lac-repressor (lacR) core (C-terminal domain) species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=9.1e-05 Score=66.91 Aligned_cols=206 Identities=8% Similarity=-0.035 Sum_probs=120.8
Q ss_pred EEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
+.||++.|.- .........+++-+.++ .|+.+.+...+ ..++..-.+....+++++|++||=........
T Consensus 1 ~~igv~~~~l~~~~~~~i~~~i~~~a~~--------~Gy~v~v~~~~-~~~~~~~~~~l~~l~~~~vdgiIl~~~~~~~~ 71 (271)
T d1jyea_ 1 LLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVSMVE-RSGVEACKTAVHNLLAQRVSGLIINYPLDDQD 71 (271)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEEECC-SSSHHHHHHHHHHHHTTTCSCEEEESCCCHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEEEECC-CCCHHHHHHHHHHHHhcCCCEEEeccccCchh
Confidence 3699999963 32222344555555544 36777443322 23444444556667888998877422222334
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC--cccchHHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKL 183 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~--~g~~~~~~l~~~~ 183 (549)
.....+...++|+|..... + +..+++ +..+....++.+++.|...|-+++++|..+.. ......+.+.+.+
T Consensus 72 ~~~~~~~~~~iPvV~~d~~-~---~~~~~~---V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~~ 144 (271)
T d1jyea_ 72 AIAVEAACTNVPALFLDVS-D---QTPINS---IIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYL 144 (271)
T ss_dssp HHHHHHHTTTSCEEESSSC-T---TSSSCE---EEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeeeeecc-c---cccCCc---cccchhhccccceeeeeccccccccccccccccchHHhhhHHHHHHh
Confidence 4555677899999987431 1 222343 33566667777888888889999999975432 2345567788888
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEE
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 251 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i 251 (549)
++.+.+.......+.. ....+....+.+.....-..|++.+...+..+++.+++.|+..++.+-|
T Consensus 145 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ai~~~~~~~a~~~~~~l~~~g~~vp~di~I 209 (271)
T d1jyea_ 145 TRNQIQPIAEREGDWS---AMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISV 209 (271)
T ss_dssp HHTTCCCSEEEECCSS---HHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred hhccccccceeccccc---cccccchhhhhhhcccccchhhccchhhhhHHHHhHHHhhccCCceEEE
Confidence 8888766544433322 2233333333343333223455566666778899999998765443333
|
| >d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Galactose/glucose-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=0.00043 Score=63.25 Aligned_cols=207 Identities=8% Similarity=-0.001 Sum_probs=128.4
Q ss_pred eEEEEEEeccCCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCCchHH
Q 008904 26 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMA 104 (549)
Q Consensus 26 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~~ 104 (549)
++|||+++|.-. ..+..++...+++.-+.. .|+ ++.+.+...++.+-.+.+.+++++++.+|| .|..+...
T Consensus 1 ~~kIgv~~~~~~---~~f~~~i~~gi~~~a~~~---~~~--~l~~~~~~~~~~~q~~~i~~li~~~vDgiii~~~~~~~~ 72 (305)
T d2fvya1 1 DTRIGVTIYKYD---DNFMSVVRKAIEQDAKAA---PDV--QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 72 (305)
T ss_dssp CEEEEEEESCTT---SHHHHHHHHHHHHHHHTC---TTE--EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred CcEEEEEeCCCC---CHHHHHHHHHHHHHHHHc---CCc--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEeeccccccc
Confidence 589999998843 244555555555543322 234 555677888999999999999999999876 57777777
Q ss_pred HHHHHhhhhcCCcEEecccCCCCCCC-CCCCceEEccCCcHHHHHHHHHHHHHc------------CCcEEEEEEecCCc
Q 008904 105 HVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYF------------GWGEVIAIFNDDDQ 171 (549)
Q Consensus 105 ~~va~~~~~~~iP~Is~~~~~~~ls~-~~~~~~~r~~ps~~~~~~ai~~~l~~~------------~W~~v~ii~~~~~~ 171 (549)
.....-+...++|++.+....+ ... ..++....+..+....+..+++++... |-++++++..+...
T Consensus 73 ~~~~~~~~~~~ipvv~~~~~~~-~~~~~~~~~~~~V~~dn~~~g~~~~~~l~~~~~~~~~~~~~~~g~~~i~~i~g~~~~ 151 (305)
T d2fvya1 73 GTVIEKARGQNVPVVFFNKEPS-RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 151 (305)
T ss_dssp HHHHHHHHTTTCCEEEESSCCC-HHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTC
T ss_pred HHHHHHHHhcCCceeeeeeccc-ccccccCCCceEEEeCcHHHHHHHHHHHHHHhhhccccccccCCCceEEEEeCCCcc
Confidence 7777778899999999743221 111 234556666666676666666666442 55688888754432
Q ss_pred --ccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCe-EEEEEcchHHHHHHHHHHHHcCC
Q 008904 172 --GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEAR-VIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 172 --g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~-viil~~~~~~~~~il~~a~~~g~ 243 (549)
.....+.+.+.+++.|++.......... ............+.. ...+ ..+++.....+..+++++++.|.
T Consensus 152 ~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~g~~~a~~~~g~ 226 (305)
T d2fvya1 152 PDAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK 226 (305)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHhhhcCCcccceeEeecc--ccchhhHHHHHHHHhhccCCCceEEEecchHHhHHHHHHHHHhCC
Confidence 2344567778888888765543322221 122222333322222 2222 24555666667788888888874
|
| >d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Quorum-sensing signal (autoinducer-2) binding protein LuxP species: Vibrio harveyi [TaxId: 669]
Probab=97.96 E-value=0.00051 Score=64.03 Aligned_cols=211 Identities=7% Similarity=-0.010 Sum_probs=129.8
Q ss_pred CCCceEEEEEEeccC--CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-C
Q 008904 22 LKPEVLNVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-P 98 (549)
Q Consensus 22 ~~~~~i~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p 98 (549)
...++++||+++|.. +.+-.....+++.++++.+ . ++.+.....++..++..-.+....++.+++++||- |
T Consensus 36 ~~~k~~~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g----~--~~~i~~~~~~s~~d~~~q~~~i~~~i~~~vDgIIi~~ 109 (338)
T d1jx6a_ 36 PTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLN----I--NYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTL 109 (338)
T ss_dssp CCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTT----C--CEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHcC----C--cEEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 567899999999964 2222344556655555532 1 34566666777788888788888889999988774 5
Q ss_pred CCchHHHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCC--cEEEEEEecCCc-ccch
Q 008904 99 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAIFNDDDQ-GRNG 175 (549)
Q Consensus 99 ~~s~~~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W--~~v~ii~~~~~~-g~~~ 175 (549)
..+.....+..++...++|++......+......++.+..+.......++.+++.|...+. .+++++.....+ +...
T Consensus 110 ~~~~~~~~i~~~~~~~~ipvv~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~i~~i~~~~~~~~~~R 189 (338)
T d1jx6a_ 110 DTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVR 189 (338)
T ss_dssp SSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHH
T ss_pred CcccchHHHHHHHHhCCCeEEEEccCCcccccccCCCceEEecCHHHHHHHHHHHHHHhCCCCeEEEEEecccccccHHH
Confidence 5567778888999999999998643322211122333444556777778888888887765 467777544322 2334
Q ss_pred HHHHHHHHhhcC-eEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 176 VTALGDKLAEIR-CKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 176 ~~~l~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
.+.+.+.+++.| +.+.....-. .....-...++.+.. ..++.|+. ++...+..+++++++.|.
T Consensus 190 ~~gf~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~ 255 (338)
T d1jx6a_ 190 GDTFIHQVNRDNNFELQSAYYTK----ATKQSGYDAAKASLAKHPDVDFIYA-CSTDVALGAVDALAELGR 255 (338)
T ss_dssp HHHHHHHHHHHHCCEEEEEECCC----SSHHHHHHHHHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhcccccceeeccc----chHHHHHHHHHHHhhhccccccccc-ccchhHhhhhhhhhhhhc
Confidence 566777777665 3443332211 123333344454433 23444443 444556677888888885
|
| >d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Purine repressor (PurR), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=0.0011 Score=59.73 Aligned_cols=207 Identities=11% Similarity=0.017 Sum_probs=119.3
Q ss_pred EEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+||+++|.-. ++......+++-+..+ . |+.+ .+.++..++....+....++..+++++|- +..... .
T Consensus 2 tIg~i~~~~~~pf~~~~~~gi~~~~~~---~-----gy~~--~~~~~~~d~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 70 (282)
T d1dbqa_ 2 SIGLLATSSEAAYFAEIIEAVEKNCFQ---K-----GYTL--ILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-P 70 (282)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH---H-----TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCH-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHH---c-----CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEeeecccccc-h
Confidence 5999998853 3333444555544444 2 4554 45566677777667777777888888553 333332 2
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc--ccchHHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ--GRNGVTALGDKL 183 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~--g~~~~~~l~~~~ 183 (549)
.........++|++......+. ..++ .-..++....+..+.+.+.+.|-++++++...... .......+...+
T Consensus 71 ~~~~~~~~~~iPvV~~~~~~~~---~~~~--~~v~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~~~~~~~~~~ 145 (282)
T d1dbqa_ 71 LLAMLEEYRHIPMVVMDWGEAK---ADFT--DAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAM 145 (282)
T ss_dssp HHHHHHHTTTSCEEEEECSSCC---SSSC--EEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHH
T ss_pred hhhhHHhhcCCCceEEEecccc---cccc--eEEEecccchhhhhhhhhccccccccccccCCcchhhhhhhhhhHHHHH
Confidence 2334445578999987543322 1122 22345556677888888999999999998765432 344455666666
Q ss_pred hhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCe-EEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 184 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEAR-VIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 184 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
++.+............ ...........++.+...+ -.+++.+...+..+++.+.++|+..++-+-|.
T Consensus 146 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~ 213 (282)
T d1dbqa_ 146 EEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLI 213 (282)
T ss_dssp HHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred hhcCCCccceEEEecc--cchhhHHHHHHHHHhCCCCCceEEEecchhhhhHHHHHHhccCCCCceEEEE
Confidence 6666544332222222 2233334555555444333 23444556667778889999987655444443
|
| >d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: L-arabinose-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.0065 Score=55.07 Aligned_cols=214 Identities=10% Similarity=0.017 Sum_probs=118.6
Q ss_pred eEEEEEEeccCC-CCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchH
Q 008904 26 VLNVGAIFSFGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 103 (549)
Q Consensus 26 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~ 103 (549)
+|+||++.+... ++-.....+++.|.++. |+++-+ .+ ..++..-.+.+..++.+++++||= |.....
T Consensus 1 ~~kIg~v~~~~~~p~~~~~~~g~~~aa~~~--------G~~~i~--~~-~~d~~~q~~~i~~li~~~vDgiIi~~~~~~~ 69 (305)
T d8abpa_ 1 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEVIK--IA-VPDGEKTLNAIDSLAASGAKGFVICTPDPKL 69 (305)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEEEE--EE-CCSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEE--Ec-CCCHHHHHHHHHHHHHcCCCEEEEccccccc
Confidence 589999999864 33334455555555553 566532 22 347777777888889999998774 555666
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHH----HHcCC---cEEEEEEecCCcc--cc
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV----SYFGW---GEVIAIFNDDDQG--RN 174 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l----~~~~W---~~v~ii~~~~~~g--~~ 174 (549)
...+...+...++|+|.+...-........+.+..+.......+..+++.+ .+.++ ....++....... ..
T Consensus 70 ~~~~~~~a~~~giPVV~~d~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 149 (305)
T d8abpa_ 70 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 149 (305)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred cHHHHHHHHhcCCCEEEEcCccccccccccCccceeeehHHHHHHHHHHHHHHHhccccccccceEEEEcCCCCCcHHHH
Confidence 677778888999999997432111111112222233334444445444443 33333 3444444443322 33
Q ss_pred hHHHHHHHHhhcCeE---EEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEE-EcchHHHHHHHHHHHHcCCCCCCe
Q 008904 175 GVTALGDKLAEIRCK---ISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVV-HGYSRTGLMVFDVAQRLGMMDSGY 248 (549)
Q Consensus 175 ~~~~l~~~~~~~g~~---v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil-~~~~~~~~~il~~a~~~g~~~~~~ 248 (549)
..+.+.+.+++.+.. +..... . . .....-....+.+... +.+.+++ ++....+..+++++++.|+..++.
T Consensus 150 R~~g~~~~l~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~a~g~~~Al~~~G~~~~~i 225 (305)
T d8abpa_ 150 RTTGSMDALKAAGFPEKQIYQVPT-K-S--NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 225 (305)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEC-S-S--SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHHhhccccccceecc-C-C--cchhhhHHHHHhhhccCCCcccccccccchHHHHHHHHHHHHhhccCCCc
Confidence 456677777776643 222111 1 1 1223333444444333 2345444 444555677888999999875555
Q ss_pred EEEEeC
Q 008904 249 VWIATT 254 (549)
Q Consensus 249 ~~i~~~ 254 (549)
.-++.+
T Consensus 226 ~~vg~d 231 (305)
T d8abpa_ 226 IGIGIN 231 (305)
T ss_dssp EEEEES
T ss_pred eEEEec
Confidence 555544
|
| >d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Glucose-resistance amylase regulator CcpA, C-terminal domain species: Bacillus megaterium [TaxId: 1404]
Probab=97.56 E-value=0.0015 Score=58.59 Aligned_cols=206 Identities=12% Similarity=0.027 Sum_probs=120.1
Q ss_pred EEEEEEecc-CCCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 27 LNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 27 i~IG~l~~~-~~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
=.||+++|. +.++......+++-+.++ . |+++ .+.++..++..-.+....++..+++++|-........
T Consensus 4 ~tIgvvvp~l~~~f~~~~~~gi~~~~~~---~-----g~~~--~~~~~~~~~~~e~~~i~~~~~~~vdgii~~~~~~~~~ 73 (275)
T d2nzug1 4 TTVGVIIPDISNIFYAELARGIEDIATM---Y-----KYNI--ILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEE 73 (275)
T ss_dssp SEEEEEESCTTSHHHHHHHHHHHHHHHH---T-----TCEE--EEEECTTCHHHHHHHHHHHHTTCCSEEEECCSCCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHH---c-----CCEE--EEEECCCCHHHHHHHHHHHHhcCCceeeccccchhhH
Confidence 369999985 322222333444333333 2 5655 4455566776666666777788888888433222222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCCc---ccchHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ---GRNGVTALGDK 182 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~~---g~~~~~~l~~~ 182 (549)
....+...++|++......+ ...++ .+.+.....+..+++.+...|-++++++..+... .......+...
T Consensus 74 -~~~~l~~~~~pvv~~~~~~~---~~~~~---~V~~d~~~~~~~~~~~l~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~ 146 (275)
T d2nzug1 74 -HVEELKKSPVPVVLAASIES---TNQIP---SVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRA 146 (275)
T ss_dssp -HHHHHHHCSSCEEEESCCCT---TCCSC---EEEECHHHHHHHHHHHHHHTTCSCEEEEESCTTSHHHHTTHHHHHHHH
T ss_pred -HHHHHhhccccccccccccc---ccccc---ccccccccchhHHHHHHHHhcccceEEEecCcccchhhhHHHHHHHHH
Confidence 23456778999988643222 11233 3456677778888899999999999999854322 22344556666
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEE
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 252 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~ 252 (549)
.++.|+++......... .+...-...++++... .++. |++++...+..++..+.++|+..+.-+.|.
T Consensus 147 ~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a-i~~~~d~~A~g~~~~l~~~g~~ip~di~vi 215 (275)
T d2nzug1 147 LTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTA-IFVGTDEMALGVIHGAQDRGLNVPNDLEII 215 (275)
T ss_dssp HHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSE-EEESSHHHHHHHHHHHHTTTCCTTTTCEEE
T ss_pred HHHcCCCCCcceEEecc--CCHHHHHHHHHHHHhcCCCCeE-EEecChHHHHHHHHHHhhcCCCCCccceee
Confidence 77777765322111111 2233444555665543 3334 444555677789999999998755544444
|
| >d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: D-ribose-binding protein species: Escherichia coli, strain k-12 [TaxId: 562]
Probab=97.32 E-value=0.009 Score=52.93 Aligned_cols=195 Identities=11% Similarity=0.081 Sum_probs=115.3
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
.||++.|.- .++-.....+++-+.++. |+.+ .+.++..++..-.+...+++.+++.+++- |.......
T Consensus 3 tIgvvvp~~~~~f~~~~~~gi~~~a~~~--------g~~~--~i~~~~~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~ 72 (271)
T d2dria_ 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNL--VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCcccccccccccchH
Confidence 399999864 222233445555555442 4555 45667778888888888888899988875 44444444
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCC--cEEEEEEecCCc--ccchHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAIFNDDDQ--GRNGVTALGD 181 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W--~~v~ii~~~~~~--g~~~~~~l~~ 181 (549)
.....+...++|+|.+....+. .+.+-.+.+.+...+..+++.+.+.+- .+++++...... .......+.+
T Consensus 73 ~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (271)
T d2dria_ 73 NAVKMANQANIPVITLDRQATK-----GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCSS-----SCCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhcceeEEEecccccc-----cccceEEeecchhhHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHhHHH
Confidence 5566777889999987432211 122344456666677788888766433 477776643322 2334455667
Q ss_pred HHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhc--CCCeEEEEEcchHHHHHHHHHHHHcC
Q 008904 182 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLG 242 (549)
Q Consensus 182 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~viil~~~~~~~~~il~~a~~~g 242 (549)
.++..+........... ...........+.. ...+. |++.+...+..+++++++.|
T Consensus 148 ~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a-i~~~~d~~a~g~~~al~~~g 205 (271)
T d2dria_ 148 AVAAHKFNVLASQPADF----DRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAG 205 (271)
T ss_dssp HHHHHTCEEEEEEECTT----CHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHT
T ss_pred Hhhcccccccceeeecc----hhhhhhhhHHHHHhcccCceE-EecccHHHHHHHHHHHHHhC
Confidence 77776665554433332 23333333333333 23344 44455566777888888877
|
| >d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Trehalose repressor, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.008 Score=52.94 Aligned_cols=190 Identities=12% Similarity=0.030 Sum_probs=117.6
Q ss_pred EEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcCCCchHHH
Q 008904 27 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 105 (549)
Q Consensus 27 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiGp~~s~~~~ 105 (549)
-.||+++|.- .........++.-++++ . |+.+ .+.++..++..-.+....+.++++.+||=-..+...
T Consensus 3 k~Igvi~p~~~~~~~~~~~~~i~~~~~~---~-----Gy~~--~~~~s~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~~- 71 (255)
T d1byka_ 3 KVVAIIVTRLDSLSENLAVQTMLPAFYE---Q-----GYDP--IMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT- 71 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH---H-----TCEE--EEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCC-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHH---c-----CCEE--EEEeCCCCHHHHHHHHHHHHhccccceeeccccchH-
Confidence 3699999964 22222334454444444 2 5554 455677777776777777777888888843222222
Q ss_pred HHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHHHcCCcEEEEEEecCC---cccchHHHHHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD---QGRNGVTALGDK 182 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~~~~W~~v~ii~~~~~---~g~~~~~~l~~~ 182 (549)
..+....++|++..+...+ .++ .+.++....++.+++.|...|-++++++..... ......+.+.+.
T Consensus 72 --~~~~~~~~~p~v~i~~~~~-----~~~---~v~~D~~~~g~~~~~~L~~~g~~~i~~i~~~~~~~~~~~~r~~g~~~~ 141 (255)
T d1byka_ 72 --EEMLAHWQSSLVLLARDAK-----GFA---SVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp --TTTSGGGSSSEEEESSCCS-----SCE---EEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred --HHHHHHcCCCEEEeccCCC-----CCC---EEEeCcHHHHHHHHHHHHHhccccccccCCCcccccHHHHHhhHHHHH
Confidence 2567778899987643221 233 345677778888999999999999999964322 223456788888
Q ss_pred HhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcchHHHHHHHHHHHHcCC
Q 008904 183 LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 243 (549)
Q Consensus 183 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~~~~~~~il~~a~~~g~ 243 (549)
+++.|+..... ... ....+-...++++...+++.| ++.+...+..+++.+++.|+
T Consensus 142 ~~~~~i~~~~~--~~~---~~~~~~~~~~~~~l~~~~~ai-i~~~d~~A~g~~~~l~~~g~ 196 (255)
T d1byka_ 142 CKAHKLHPVAA--LPG---LAMKQGYENVAKVITPETTAL-LCATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHHTTCCCEEE--CCC---SCHHHHHHHSGGGCCTTCCEE-EESSHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCcccc--cCC---CCHHHHHHHHHHHhCCcccee-eccchhhHhhHHHHHHHhCc
Confidence 88888754332 121 122332344445444566654 45666667788899988885
|
| >d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: D-allose-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.041 Score=48.98 Aligned_cols=214 Identities=9% Similarity=-0.035 Sum_probs=124.1
Q ss_pred EEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-CCCchHHH
Q 008904 28 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 105 (549)
Q Consensus 28 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aiiG-p~~s~~~~ 105 (549)
+.+++.+.- .++-.....+++-+.++. |+++.+...++..++.+-.+...+++.+++++||- |..+....
T Consensus 3 ~~a~i~~~~~npff~~i~~g~~~~a~~~--------g~~~~i~~~~~~~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~ 74 (288)
T d1guda_ 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEEecCCcchhh
Confidence 456677663 333345566777666663 67888887788888888888888899999999974 55555555
Q ss_pred HHHHhhhhcCCcEEecccCCCCC--CCCCCCceEEccCCcHHHHHHHHHHHHHcC---CcEEEEEEecCCc--ccchHHH
Q 008904 106 VLSHLANELQVPLLSFTALDPTL--SPLQYPFFVQTAPNDLYLMSAIAEMVSYFG---WGEVIAIFNDDDQ--GRNGVTA 178 (549)
Q Consensus 106 ~va~~~~~~~iP~Is~~~~~~~l--s~~~~~~~~r~~ps~~~~~~ai~~~l~~~~---W~~v~ii~~~~~~--g~~~~~~ 178 (549)
....-+...++|+|.+...-... .....+...-+.+.....+...++.+.... -.++.++..+... .......
T Consensus 75 ~~l~~~~~~gipvv~~d~~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~r~~~ 154 (288)
T d1guda_ 75 MPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNG 154 (288)
T ss_dssp HHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEeCCCCccccccccCCCeeeEEecCHHHHHHHHHHHHHHHhccCCceeeccCCCcccchhhHHHHh
Confidence 55566778899999864321100 001123333445556666666666654432 2366666543322 2233345
Q ss_pred HHHHHhhc-CeEEEEEEccCCCCCCChhhHHHHHHHHhcC--CCeEEEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeCC
Q 008904 179 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 255 (549)
Q Consensus 179 l~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 255 (549)
+.+.+.+. +..+........ +.......++.+... ..+. |+++....+..+++.+++.|+. .+..-++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~a-i~~~~d~~a~g~~~al~~~g~~-~di~ivg~D~ 228 (288)
T d1guda_ 155 ATEAFKKASQIKLVASQPADW----DRIKALDVATNVLQRNPNIKA-IYCANDTMAMGVAQAVANAGKT-GKVLVVGTDG 228 (288)
T ss_dssp HHHHHHTCTTEEEEEEEECTT----CHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHTTCT-TTSEEEEESC
T ss_pred hhcccccccccccceeeeccc----hhhHHHHHHHHhhccCcccce-eeccCCHHHHHHHHHHHHcCCC-CCeEEEecCC
Confidence 55555554 345443332222 244444445554333 3343 4556666777789999999973 4556666554
|
| >d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: AI-2 receptor LsrB species: Salmonella typhi [TaxId: 90370]
Probab=95.90 E-value=0.52 Score=41.72 Aligned_cols=209 Identities=10% Similarity=-0.004 Sum_probs=108.2
Q ss_pred eEEEEEEeccC-CCCchHHHHHHHHHHHHHHcCCCCCCCceEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-cCCCchH
Q 008904 26 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVM 103 (549)
Q Consensus 26 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~il~g~~l~~~~~d~~~~~~~a~~~~~~l~~~~v~aii-Gp~~s~~ 103 (549)
.-+||++.+.. .++-.....+++.+.++. |+++.+. ..+..++.+-.+....++.+++.+|| .|..+..
T Consensus 3 ~~kI~~i~~~~~npf~~~~~~g~~~~a~~~--------G~~v~~~-~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~~~ 73 (316)
T d1tjya_ 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GIDVTYD-GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDG 73 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCEEEEC-CCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSST
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEEEE-ECCCCCHHHHHHHHHHHHhcCCCeeeecccccch
Confidence 46899998774 333345567777777763 5555432 23456788878888889999998877 4666655
Q ss_pred HHHHHHhhhhcCCcEEecccCCCCCCCCCCCceEEccCCcHHHHHHHHHHHH---HcCCcEEEEEEecCCcccch---HH
Q 008904 104 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS---YFGWGEVIAIFNDDDQGRNG---VT 177 (549)
Q Consensus 104 ~~~va~~~~~~~iP~Is~~~~~~~ls~~~~~~~~r~~ps~~~~~~ai~~~l~---~~~W~~v~ii~~~~~~g~~~---~~ 177 (549)
......-+...++|++.+....+. ... ..+.-. .........+...+. ..+...+.++.... ..... ..
T Consensus 74 ~~~~~~~a~~~gi~vv~~d~~~~~--~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 148 (316)
T d1tjya_ 74 LCPALKRAMQRGVKILTWDSDTKP--ECR-SYYINQ-GTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSP-TVTDQNQWVK 148 (316)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCG--GGC-SEEEES-CCHHHHHHHHHHHHHHHHCSSSEEEEEEESCS-SCHHHHHHHH
T ss_pred hhhhhhhhhcccccceeccccccc--ccc-cccccc-chhHHHHHHHHHHHHHhhcccccceeeecccc-cccchhhhhh
Confidence 666667777889999987433221 111 222221 222222333333332 23456666555332 22222 22
Q ss_pred HHHHHHhhc--CeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeE-EEEEcchHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 008904 178 ALGDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEARV-IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 254 (549)
Q Consensus 178 ~l~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~v-iil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 254 (549)
.+....... +..+.....-. .+...-...++.+....+++ .|++.+...+.-+++.+++.|. .+...++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~p~~~aI~~~nd~~a~ga~~al~~~g~--~~~~~vg~d 222 (316)
T d1tjya_ 149 EAKAKISQEHPGWEIVTTQFGY----NDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR--NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHHHHHHHHHTTC--CSCEEEEBC
T ss_pred HHHHHHHhhcccccchhhccch----hhhHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHcCC--CCcEEEEEc
Confidence 233333333 33333332211 12333334444443333332 3334444556667777777764 334455444
|
| >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: NADH-dependent butanol dehydrogenase A (TM0820) species: Thermotoga maritima [TaxId: 2336]
Probab=90.64 E-value=0.38 Score=44.76 Aligned_cols=88 Identities=11% Similarity=0.125 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCccc-chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
+-+.++++.+|.+++.+|+++..+.. ...+.+.+.+++.|+.+.....+.+. ....+..+.++.++..++|.||-.+
T Consensus 23 ~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~--pt~~~v~~~~~~~~~~~~D~IIavG 100 (398)
T d1vlja_ 23 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVG 100 (398)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCC--CCHHHHHHHhhhcccccCceEEecC
Confidence 44888999999999999997655433 35789999999999987654444433 3567788888899999999999877
Q ss_pred chH--HHHHHHHH
Q 008904 227 YSR--TGLMVFDV 237 (549)
Q Consensus 227 ~~~--~~~~il~~ 237 (549)
.+. ++.+.+..
T Consensus 101 GGs~iD~aK~ia~ 113 (398)
T d1vlja_ 101 GGSVVDSAKAVAA 113 (398)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHH
Confidence 664 44444433
|
| >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Lactaldehyde reductase FucO species: Escherichia coli [TaxId: 562]
Probab=89.72 E-value=0.29 Score=45.36 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCcccchHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEcc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 227 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~~ 227 (549)
..+.++++.+|.+++.+|++....-....+++.+.+++.|+++.....+.+. ....++.+.++..++.++|.||-.+.
T Consensus 19 ~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~--p~~~~v~~~~~~~~~~~~D~IiaiGG 96 (385)
T d1rrma_ 19 GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGVFQNSGADYLIAIGG 96 (385)
T ss_dssp GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECcchhhCcHHHHHHHHHHHcCCeEEEEcCccCC--CCHHHHHHHhhhhhccCCCEEEecCC
Confidence 5588889999999998887543222235688999999999987654445544 45778888899999999999998776
Q ss_pred hH--HHHHHHHH
Q 008904 228 SR--TGLMVFDV 237 (549)
Q Consensus 228 ~~--~~~~il~~ 237 (549)
+. ++.+.+..
T Consensus 97 GS~iD~aK~ia~ 108 (385)
T d1rrma_ 97 GSPQDTCKAIGI 108 (385)
T ss_dssp HHHHHHHHHHHH
T ss_pred CchhhHHHHHHH
Confidence 53 44444433
|
| >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Alcohol dehydrogenase TM0920 species: Thermotoga maritima [TaxId: 2336]
Probab=85.15 E-value=1.4 Score=40.00 Aligned_cols=86 Identities=9% Similarity=0.097 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCccc-chHHHHHHHHhhcCeEEEEEEccCCCCCCChhhHHHHHHHHhcCCCeEEEEEc
Q 008904 148 SAIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 226 (549)
Q Consensus 148 ~ai~~~l~~~~W~~v~ii~~~~~~g~-~~~~~l~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viil~~ 226 (549)
..+.++++.+| +++.+|+++..+.. ...+.+.+.+++.|+.+.....+.+. ...+++.+.++.+++.++|.||-.+
T Consensus 18 ~~l~~~~~~~g-~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavG 94 (359)
T d1o2da_ 18 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVERYRNDSFDFVVGLG 94 (359)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHHHcC-CeEEEEEcCcHHHHhhHHHHHHHHHHHcCCeEEEEcCccCC--CCHHHHHHhhhhccccCCceEEecc
Confidence 34666778888 78888987665443 35689999999999887643344444 4577888889999999999988877
Q ss_pred chH--HHHHHHH
Q 008904 227 YSR--TGLMVFD 236 (549)
Q Consensus 227 ~~~--~~~~il~ 236 (549)
.+. ++.+++.
T Consensus 95 GGs~iD~aK~ia 106 (359)
T d1o2da_ 95 GGSPMDFAKAVA 106 (359)
T ss_dssp SHHHHHHHHHHH
T ss_pred cccchhHHHHHH
Confidence 653 4444443
|