Citrus Sinensis ID: 008946

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
MASNTRIDSRSGFCKSNSIFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL
cccccccccccccccccEEEEcccccccccccccHHHHHHHHccccccccEEEEcccccEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHccccEEEcccccccHHHHHHHHHHcccEEEEEccccHHHHccccccEEEEccccccccccccccccHHHHHHccccccccccccccccEEEEEcccccccccccEEEccHHHHHHHHHHHccccccccccEEEECccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccECccccHHHHHHHHcccccccccccccccEEEcccccccHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccEEEEEccccccccccccccEEEEEcccccccccccHHHHHHcccccccccccccEEEcccccEEEEccccHHHHccccccccHHHHHHHccccccccEEEccccccccccEEEEEEEEcccccccHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHHHccc
***********GFCKSNSIFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKE*SGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKL*TS**
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MASNTRIDSRSGFCKSNSIFYSKRKPVSLPPNESLDVTTFISSRAHHGRTAFIDAATGRHLTFSELWRAVDSVSTCLSDMGIRKGHVILLLSPNSIFFPVVCLAVMSLGAIITTTNPLNTKQEIAKQIADSKPVLAFTISQLVPKLAGSTLPIVLLDDEKTTSTEGIKTVTTLPQMMRKEPSGTLVRDRINQDDVATLLYSSGTTGASKGVVSSHRNLIAMVQTVLGRFKLEDGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFDMHEMLSSISKYRATYLPLVPPILVALISGADQIRSKYDLSSLQSVLSGGAPLSREVIEGFVQKYPKVRILQGYGLTESTGIGASTDSLEESRKYGTAGMLSPSMEAKIVDPDSGKALLVNQTGELWLKGPSIMKGYFSNPEATTSTLDSEGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
4-coumarate--CoA ligase-like 5 Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.confidentQ84P21
4-coumarate--CoA ligase-like 4 probableQ10S72
Probable 4-coumarate--CoA ligase 2 probableQ54P78

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
6.-.-.-Ligases.probable
6.2.-.-Forming carbon-sulfur bonds.probable
6.2.1.-Acid--thiol ligases.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3TSY, chain A
Confidence level:very confident
Coverage over the Query: 17-466
View the alignment between query and template
View the model in PyMOL