Citrus Sinensis ID: 008961

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
Protein Sequence
MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
Secondary Structure (PSIPRED)
ccccccccccccEEEEHHHHHHHccccccccccEEEEEEccccEEEEEEEEEcccccEEEEEcccHHHHHccccccccEEEEEEccccccEEEEEEEccccccccccccccccccccccccccccccccccEEcccccccccccccccccHHHccccccccccccEEEEEccccccccccHHHHcccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHccccccccHHHHHHccccccHHHcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccccccEEEcHHHHHHHcccccccccEEEEEEcccccEEEEEEEEcccccccEEEEccccHHHHHcccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHccHHHHHHHcccccccccEEEEEEccEEEEcccccEEcccEEEEEcccccccEEEEccccHHHccccccEEcccccccccccccccccccccHHHccHHHHHHHccccccHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mlsasdagrigrlvlpkkcaeayfppisqpeglplkvqdskgKEWIFQFrfwpnnnsrmyvLEGVTPCiqnmqlqagdivtfsrlepegklvmgfrkassasasdqdneankagtgipanghaeladpsswskvdksgyiaTEALgakssisrkrknttlgskskrlkieNEDVIELKLTWEEaqgllrpppnnvpsvvviegyefeeyedapilgkptifatdnvgekiqwvqcedcskwrkvpanarlpskwtcsgnlwdpersVCSVAQELREEQLEdliapnnpasskklkaakqepDCVEALEGLDTLANLAIlgegegltassqattkhprhrpgcscivciqppsgkgpkhkqtctcnvcltvKRRFHTLMLRREKKQSEKDAETSRKKQqqqklpvpeksadddplscsktgnnspnekkvvsegsdddssriksstspfkgqidlniqpereeelspgsdsgSMIRLLQDATEKYLRQQrlsssgvntssvdneglqggvtgekisngitldgshqdtdedhhgslsvkasaSISATG
Flexible Loop (DISEMBL)
mlsasdagrigRLVLPKKCAEayfppisqpeglPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAssasasdqdneaNKAGTGIPANGHAELADPSSWSKVDKSGYIATealgakssisrkrknttlgskskrlkienedvIELKLTWeeaqgllrpppnnvpsVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWrkvpanarlpskwtcsgnlwdpeRSVCSVAQELREEQLedliapnnpasskklKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPpsgkgpkhkqtctcnvcltvkRRFHTLMLrrekkqsekdaetsrkkqqqqklpvpeksadddplscsktgnnspnekkvvsegsdddssriksstspfkgqidlniqpereeelspgsdsgSMIRLLQDATEKYLRQQRlsssgvntssvdneglqggvTGEKISNGITLDGSHQdtdedhhgslsvkasasisatg
Low Complexity Region (SEG)
MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRpppnnvpsvvvIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
Disordered region (IsUnstruct)
*********IGRLVLPKKCAEAYFPPIS****LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLV*******************************************************************************EDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSV********************************CVEALEGLDTLANLAILGE*******************GCSCIVCIQ*********KQTCTCNVCLTVKRRFHTLML************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMG***************************HAELADPSSWSKVDKSG******************************IENEDVIELKL*W**************************************IFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDP********************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGF*****************AGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPA***********PDCVEALEGLDTLANLAILGEGEGL**************PGCSCIVCIQPP*********TCTCNVCLTVKRRFHTLMLR*******************************************************************FKGQIDLNIQPE***********GSMIRLLQDATEKYLRQ*************DNEGLQGGVTGEKISNGITLDGS************************
Disordered Region (DISPRO)
*****DAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAS***************************************************************KSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKL*************EGLDTLANLAILGE*****************RPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQ*****************************************************************QI***IQPERE******SDSGSMIRLLQDATEKYLRQQRL*********************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRxxxxxxxxxxxxxxxxxxxxxLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	547	2.2.26 [Sep-21-2011]
Q0D5G4	955	B3 domain-containing prot	yes	no	0.848	0.485	0.587	1e-158
Q5CCK4	780	B3 domain-containing tran	yes	no	0.870	0.610	0.453	1e-123
Q6Z3U3	949	B3 domain-containing prot	no	no	0.857	0.494	0.458	1e-114
Q8W4L5	790	B3 domain-containing tran	no	no	0.744	0.515	0.496	1e-107
O65420	713	B3 domain-containing tran	no	no	0.382	0.293	0.552	4e-54
Q7XKC4	438	Putative B3 domain-contai	no	no	0.186	0.232	0.456	4e-18
Q7XKC5	433	B3 domain-containing prot	no	no	0.177	0.224	0.469	2e-17
Q9LW31	313	B3 domain-containing tran	no	no	0.195	0.341	0.398	2e-16
Q6Z1Z3	362	B3 domain-containing prot	no	no	0.177	0.267	0.418	3e-15
A4LBC0	402	B3 domain-containing prot	no	no	0.188	0.256	0.390	1e-14

>sp|Q0D5G4|Y7633_ORYSJ B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2

 Score =  558 bits (1437), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 298/507 (58%), Positives = 358/507 (70%), Gaps = 43/507 (8%)

Query: 1   MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
           MLSASDAGRIGRLVLPKKCAEAYFP ISQ EGLPLKVQD+ GKEW+FQFRFWPNNNSRMY
Sbjct: 456 MLSASDAGRIGRLVLPKKCAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMY 515

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIP-- 118
           VLEGVTPCIQ+MQLQAGD VTFSR++PEGKLVMGFRKA++ SA +QD     A   +P  
Sbjct: 516 VLEGVTPCIQSMQLQAGDTVTFSRIDPEGKLVMGFRKATNLSA-EQDQPTKPANGVLPPP 574

Query: 119 -ANGHAELADPS------------------------SWSKVDKSGYIATEALGAKSS--I 151
            AN    + D S                        +  K+DK      E  G  SS  +
Sbjct: 575 EANNKVVVPDSSPNAAVPRPIKVNTESKSSSPVEQATACKIDKGALPQKEGPGTSSSSPL 634

Query: 152 SRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYED 211
             KRK T++G K KR  +++E+ +ELK+TWEEAQ LLRPPP   PS+VV++G+EFEEYE+
Sbjct: 635 PVKRKATSVGPKIKRFHMDSEESMELKITWEEAQELLRPPP-KAPSIVVVDGHEFEEYEE 693

Query: 212 APILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVA 271
            PILG+ T F TD  GE  QW QCEDCSKWRK+P +A LPSKWTCS N WD ERS C  A
Sbjct: 694 PPILGRRTYFVTDQSGENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSA 753

Query: 272 QELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQA 331
           QE+  E+L ++I P  P ++KK K  K + D ++  +GLDTLANLAILGEGE L   SQ 
Sbjct: 754 QEINMEELGEMI-PIKPGAAKKTK-GKVDTDNIDVSDGLDTLANLAILGEGESL--PSQP 809

Query: 332 TTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKK-QSEKDA 390
           TT+HPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVC+TV+RRF TLM+RREK+ QSEKD+
Sbjct: 810 TTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDS 869

Query: 391 ETSRKKQQ-QQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVS-EGSDDDSSRIKSSTSPF 448
              RK++  Q   PVP+  +   P S S     SP+++   + EG +D S   K ++SP 
Sbjct: 870 GVPRKREPGQSSEPVPQSGSGAHPTSTS-----SPHQRADTNGEGPEDMSIDNKRTSSPV 924

Query: 449 KGQIDLNIQPEREEELSPGSDSGSMIR 475
           K QIDLN QPERE+E SP SD+  ++R
Sbjct: 925 KNQIDLNSQPEREDEQSPKSDATRLLR 951

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5CCK4|VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1

 Score =  444 bits (1141), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/536 (45%), Positives = 325/536 (60%), Gaps = 60/536 (11%)

Query: 1   MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
           +LSASDAGRIGRLVLPK CAEAYFPPIS PEGLPLK+QD KGKEW+FQFRFWPNNNSRMY
Sbjct: 289 VLSASDAGRIGRLVLPKACAEAYFPPISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMY 348

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 120
           VLEGVTPCIQ+MQLQAGD VTFSR EPEGKLVMG+RKA++++A+     +++    + +N
Sbjct: 349 VLEGVTPCIQSMQLQAGDTVTFSRTEPEGKLVMGYRKATNSTATQMFKGSSEPNLNMFSN 408

Query: 121 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNT-TLGSKSKRLKIENEDVIELKL 179
                    +WSK++KS  +A + L  +SS++  RK    +G+KSKRL I++ DV+ELK+
Sbjct: 409 SLNPGCGDINWSKLEKSEDMAKDNLFLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKI 468

Query: 180 TWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCS 239
           TWEEAQ LLRPP +  PS+  +E  +FEEY++ P+ GK T+F +   GE+ QWVQC+ C 
Sbjct: 469 TWEEAQELLRPPQSTKPSIFTLENQDFEEYDEPPVFGKRTLFVSRQTGEQEQWVQCDACG 528

Query: 240 KWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQ 299
           KWR++P +  LP KW+CS NL DP RS CS   EL   + + L+  +     ++L ++ +
Sbjct: 529 KWRQLPVDILLPPKWSCSDNLLDPGRSSCSAPDELSPREQDTLVRQSKEFKRRRLASSNE 588

Query: 300 EPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHK 359
           + +  +    L++L N  I   GE    +  ATTKHPRHR GCSCIVC QPPSGKG KHK
Sbjct: 589 KLNQSQDASALNSLGNAGITTTGEQGEITVAATTKHPRHRAGCSCIVCSQPPSGKG-KHK 647

Query: 360 QTCTCNVCLTVKRRFHTLMLRREKK-------QSEKDAETSRKKQQQQKLPVPEKSADDD 412
            +CTC VC  VKRRF TLMLR+  K       Q  +     R + + + +P  E +A ++
Sbjct: 648 PSCTCTVCEAVKRRFRTLMLRKRNKGEAGQASQQAQSQSECRDETEVESIPAVELAAGEN 707

Query: 413 PLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGS 472
                                                  IDLN          PG+   S
Sbjct: 708 ---------------------------------------IDLNSD--------PGASRVS 720

Query: 473 MIRLLQDAT---EKYLRQQRLSSSGVNTSSVDNEGLQ-GGVTGEKISNGITLDGSH 524
           M+RLLQ A    E YL+Q+ +S++     S D    + G  +  + +   T +G+H
Sbjct: 721 MMRLLQAAAFPLEAYLKQKAISNTAGEQQSSDMVSTEHGSSSAAQETEKDTTNGAH 776

Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z3U3|Y7797_ORYSJ B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 247/539 (45%), Positives = 315/539 (58%), Gaps = 70/539 (12%)

Query: 1   MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
           +LSASDAGRIGRLVLPK CAEAYFPPISQPEG PL +QD+KGKEW FQFRFWPNNNSRMY
Sbjct: 366 VLSASDAGRIGRLVLPKACAEAYFPPISQPEGRPLTIQDAKGKEWHFQFRFWPNNNSRMY 425

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASA----------------- 103
           VLEGVTPCIQ++QLQAGD VTFSR+EP GKLVMGFRKA++  +                 
Sbjct: 426 VLEGVTPCIQSLQLQAGDTVTFSRIEPGGKLVMGFRKATNTVSLPDSQISAIANGSILGD 485

Query: 104 ----SDQDNEANKAG---------------TGIPANGHAELADPS-SWSKVDKSGYIATE 143
               S  +N A  +G               T    + H   AD   SW K DK G    E
Sbjct: 486 TLFSSTNENLAIVSGYSGFLQSIKGAADLHTSSIYDHHVNSADGDVSWLKTDKFGSRPDE 545

Query: 144 ALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEG 203
                 S+   ++   +GSKS+RL ++ E+  ELKL W+E Q LLRP P   P+VV+IE 
Sbjct: 546 G-----SLQFLKRGRNIGSKSRRLSMDAEEAWELKLYWDEVQELLRPAPTAKPTVVMIED 600

Query: 204 YEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDP 263
           YE EEY++ P+  K +IF   + GE+ QW+QC+DCSKWR++P N  + SKWTC+ N  D 
Sbjct: 601 YEIEEYDEPPVFAKRSIFTIRSTGEQDQWIQCDDCSKWRRLPLNVIVASKWTCADNTIDS 660

Query: 264 ERSVCSVAQELREEQLEDLIAPNNPASSKK----LKAAKQEPDCVEALEGLDTLANLAIL 319
           +   CS  +EL  ++L  ++        ++     K    E D V     LD  A  A+ 
Sbjct: 661 KSCSCSAPEELTPKELHIVLQQYEDMRRRRNSFGFKQNIPEMDAVS----LDAFATAAVY 716

Query: 320 GE-GEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLM 378
           G+ G   + S   TTKHPRHRPGC+CIVCIQPPSGKGPKH   CTCNVC+TV+RRF TLM
Sbjct: 717 GDVGNQGSPSVATTTKHPRHRPGCTCIVCIQPPSGKGPKHNPACTCNVCMTVRRRFKTLM 776

Query: 379 LRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDS 438
           +R++++QSE++   + KK        PE S+    LS       SP       +G     
Sbjct: 777 MRKKQRQSEREEAEASKKIAWMNRDEPEGSS----LS------RSPQTVDTTRDGDVTMF 826

Query: 439 SRIKSSTSPFKGQIDLNIQPE--REEELSPGSDSGSMIRLLQDAT---EKYLRQQRLSS 492
            ++  +    KG IDLN  P   R+EE   G    SM+ LL+ A    E Y++Q  L+S
Sbjct: 827 DKVDIN----KGHIDLNFHPTAVRDEERHGGQPRVSMVSLLEVANRPLENYMKQNGLTS 881

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8W4L5|VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=1 SV=1

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/449 (49%), Positives = 297/449 (66%), Gaps = 42/449 (9%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 61
           LSASDAGRIGRLVLPK CAEAYFPPISQ EG+PLK+QD +G+EW FQFR+WPNNNSRMYV
Sbjct: 299 LSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDVRGREWTFQFRYWPNNNSRMYV 358

Query: 62  LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSA----------SASDQDNEAN 111
           LEGVTPCIQ+M LQAGD VTFSR++P GKL+MG RKA++A            S +D  ++
Sbjct: 359 LEGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAANAGDMQGCGLTNGTSTEDTSSS 418

Query: 112 KAGTGIPA-NGHAELA--------DPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGS 162
                 P+ NG + ++         P + +     G I  +     + +  K++  T+G+
Sbjct: 419 GVTENPPSINGSSCISLIPKELNGMPENLNSETNGGRIGDDP----TRVKEKKRTRTIGA 474

Query: 163 KSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFA 222
           K+KRL + +E+ +EL+LTWEEAQ LLRP P+  P++VVIE  E EEY++ P+ GK TI  
Sbjct: 475 KNKRLLLHSEESMELRLTWEEAQDLLRPSPSVKPTIVVIEEQEIEEYDEPPVFGKRTIVT 534

Query: 223 TDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDL 282
           T   GE+ +W  C+DCSKWR++P +A L  KWTC  N+WD  R  CS  +E  +E LE++
Sbjct: 535 TKPSGEQERWATCDDCSKWRRLPVDALLSFKWTCIDNVWDVSRCSCSAPEESLKE-LENV 593

Query: 283 IAPNNPASSKKL---KAAK--QEPDCVEALEGLDTLANLAILGE--GEGLTASSQATTKH 335
           +        ++    +AAK  QEP C     GLD LA+ A+LG+  GE   A+   TT+H
Sbjct: 594 LKVGREHKKRRTGESQAAKSQQEP-C-----GLDALASAAVLGDTIGEPEVAT---TTRH 644

Query: 336 PRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSR- 394
           PRHR GCSCIVCIQPPSGKG +HK TC C VC TVKRRF TLM+RR+KKQ E+D   +  
Sbjct: 645 PRHRAGCSCIVCIQPPSGKG-RHKPTCGCTVCSTVKRRFKTLMMRRKKKQLERDVTAAED 703

Query: 395 KKQQQQKLPVPEKSADDDPLSCSKTGNNS 423
           KK++  +L   +KS ++  ++ ++   NS
Sbjct: 704 KKKKDMELAESDKSKEEKEVNTARIDLNS 732

Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O65420|VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=4 SV=3

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/228 (55%), Positives = 155/228 (67%), Gaps = 19/228 (8%)

Query: 1   MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
           +LSA+D G+  RLVLPKK AEA+ P +S  +G+PL VQD  GKEW FQFRFWP++  R+Y
Sbjct: 331 ILSATDTGK--RLVLPKKYAEAFLPQLSHTKGVPLTVQDPMGKEWRFQFRFWPSSKGRIY 388

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 120
           VLEGVTP IQ +QLQAGD V FSRL+PE KL++GFRKAS   +SDQ +         PA+
Sbjct: 389 VLEGVTPFIQTLQLQAGDTVIFSRLDPERKLILGFRKASITQSSDQAD---------PAD 439

Query: 121 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 180
            H+         +V KS YI  E  G + S S K+K++ + ++SKR K+E  D   LKLT
Sbjct: 440 MHSPF-------EVKKSAYITKETPGVECS-SGKKKSSMMITRSKRQKVEKGDDNLLKLT 491

Query: 181 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGE 228
           WEEAQG L PPPN  PS VVIE YEFEEYE+API+GKPT  A     E
Sbjct: 492 WEEAQGFLLPPPNLTPSRVVIEDYEFEEYEEAPIIGKPTDVAGSTCTE 539

May be involved in plant development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XKC4|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica GN=Os04g0676650 PE=3 SV=2

 Score = 93.2 bits (230), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-WIFQFRFWPNNNSRMY 60
           L+ SD G IGR+V+PK+ AEA+ P + Q EG+ LK+ D K +  W F++RFWPNN SRMY
Sbjct: 306 LTNSDVGNIGRIVMPKRDAEAHLPALHQREGVTLKMDDFKFETTWNFKYRFWPNNKSRMY 365

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASA 103
           VLE     +++  LQ GDI    +    GK V+   KA   +A
Sbjct: 366 VLESTGGFVKHHGLQTGDIFIIYKSSESGKFVVRGEKAIKPNA 408

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XKC5|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-WIFQFRFWPNNNSRMY 60
           L+ SD G IGR+V+PK+ AEA+ P + Q EG+ LK+ D K +  W F++RFWPNN SRMY
Sbjct: 301 LTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYRFWPNNKSRMY 360

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 98
           VLE     ++   LQ GDI    +     KLV+   KA
Sbjct: 361 VLESTGGFVKQHVLQTGDIFIIYKSSESEKLVVRGEKA 398

Probable transcription regulator that binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LW31|FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 1/108 (0%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-WIFQFRFWPNNNSRMY 60
           L  SD   + R++LPKK AEA+ P +   EG+P++++D  G   W F++R+WPNNNSRMY
Sbjct: 96  LKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWTFKYRYWPNNNSRMY 155

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDN 108
           VLE     +    LQ GD +   +       V+  RKAS     D  N
Sbjct: 156 VLENTGDFVNAHGLQLGDFIMVYQDLYSNNYVIQARKASEEEEVDVIN 203

Transcription regulator involved in gene regulation during late embryogenesis. Its expression to the epidermis is sufficient to control foliar organ identity by regulating positively the synthesis abscisic acid (ABA) and negatively gibberellin production. Negatively regulates TTG1 in the embryo. Positively regulates the abundance of the ABI3 protein in the seed.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z1Z3|IDEF1_ORYSJ B3 domain-containing protein IDEF1 OS=Oryza sativa subsp. japonica GN=IDEF1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSK-GKEWIFQFRFWPNNNSRMY 60
           L+ SD G +GR+VLPKK AEA  PP+ Q + L L + D      W F++R+WPNN SRMY
Sbjct: 257 LTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFKYRYWPNNKSRMY 316

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 98
           +L+     ++   LQAGD++   +    GK ++   KA
Sbjct: 317 ILDSAGEFLKTHGLQAGDVIIIYKNLAPGKFIIRGEKA 354

Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A4LBC0|LFL1_ORYSJ B3 domain-containing protein LFL1 OS=Oryza sativa subsp. japonica GN=LFL1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 2/105 (1%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQPEGL-PLKVQDSKGKE-WIFQFRFWPNNNSRM 59
           L  SD  ++GR+VLPKK AEAY P ++  +G   L + D +  + W F++R+WPNN SRM
Sbjct: 185 LRYSDVSQLGRIVLPKKEAEAYLPILTSKDGKKSLCMHDLQNAQLWTFKYRYWPNNKSRM 244

Query: 60  YVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASAS 104
           YVLE     ++   LQ GD +   + +   + V+G +KA    A+
Sbjct: 245 YVLENTGDYVRTHDLQLGDSIVIYKDDENNRFVIGAKKAGDQQAA 289

Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	547
224076806	918	predicted protein [Populus trichocarpa]	0.990	0.590	0.760	0.0
255560846	854	transcription factor, putative [Ricinus	0.963	0.617	0.764	0.0
449433878	896	PREDICTED: B3 domain-containing protein	0.996	0.608	0.716	0.0
357446313	888	B3 domain-containing transcription repre	0.974	0.600	0.745	0.0
224116220	842	predicted protein [Populus trichocarpa]	0.983	0.638	0.74	0.0
356549411	889	PREDICTED: B3 domain-containing protein	0.979	0.602	0.734	0.0
449479362	899	PREDICTED: LOW QUALITY PROTEIN: B3 domai	0.996	0.606	0.718	0.0
356549413	855	PREDICTED: B3 domain-containing protein	0.950	0.608	0.730	0.0
356555034	854	PREDICTED: B3 domain-containing protein	0.941	0.603	0.729	0.0
239983848	955	RecName: Full=B3 domain-containing prote	0.848	0.485	0.587	1e-156

>gi|224076806|ref|XP_002305001.1| predicted protein [Populus trichocarpa] gi|222847965|gb|EEE85512.1| predicted protein [Populus trichocarpa]

 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/559 (76%), Positives = 466/559 (83%), Gaps = 17/559 (3%)

Query: 1   MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
           MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPL+VQDSKGKEWIFQFRFWPNNNSRMY
Sbjct: 365 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLRVQDSKGKEWIFQFRFWPNNNSRMY 424

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 120
           VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA+SA  SDQDNE ++ G G+   
Sbjct: 425 VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKATSAPPSDQDNETSQTGNGVSTK 484

Query: 121 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 180
           G AEL DPS WSKVDKSGYIA E L  KSSI RKRK++TLGSKSKRL+IENED+IELKLT
Sbjct: 485 GDAEL-DPSPWSKVDKSGYIAKEVLEGKSSI-RKRKSSTLGSKSKRLRIENEDMIELKLT 542

Query: 181 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSK 240
           WEEAQGLLRPPP++VPS+V IEG+EFEEYEDAP+LGKPTIFATDNVG+KIQWVQCEDC K
Sbjct: 543 WEEAQGLLRPPPDHVPSIVAIEGFEFEEYEDAPVLGKPTIFATDNVGQKIQWVQCEDCLK 602

Query: 241 WRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNN-PASSKKLKAAKQ 299
           WRK+PANA LPSKW CS N WDPERS CSVAQEL  EQLEDL+   N   +SK+ K AK+
Sbjct: 603 WRKLPANALLPSKWACSSNTWDPERSSCSVAQELTAEQLEDLLPSCNLVVTSKRSKDAKK 662

Query: 300 EPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHK 359
           + D VEALEGLDTLANLAILGEGE   ASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHK
Sbjct: 663 DIDRVEALEGLDTLANLAILGEGEAFPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHK 722

Query: 360 QTCTCNVCLTVKRRFHTLMLRREK---------KQSEKDAETSRKKQQQQKLPVPEKSAD 410
           QTCTCNVC TVKRRF TLM++REK         KQSEK+AET+RK+QQ+   P  EK  D
Sbjct: 723 QTCTCNVCQTVKRRFKTLMMKREKKQSEKEAETKQSEKEAETTRKRQQE---PSAEKLLD 779

Query: 411 DDPLSCSKTG--NNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGS 468
           D+P   S TG  + SPN+KK VSEGSDDD SR+KSSTSPFKGQIDLNIQPERE+ELSPGS
Sbjct: 780 DEPSPSSNTGSESGSPNKKKTVSEGSDDDPSRMKSSTSPFKGQIDLNIQPEREDELSPGS 839

Query: 469 DSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTD 528
           DSG M+R+LQDATE YLR QR  SS  + +   N  L  G T EK+S+ I L  SHQD D
Sbjct: 840 DSGGMMRMLQDATETYLRMQRFLSSDGDNNPSGNHMLSSGGTREKVSDVIMLGSSHQDAD 899

Query: 529 EDHHGSLSVKASASISATG 547
           +DH  + S+ ASAS  ATG
Sbjct: 900 KDHPSAFSMNASASTPATG 918

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560846|ref|XP_002521436.1| transcription factor, putative [Ricinus communis] gi|223539335|gb|EEF40926.1| transcription factor, putative [Ricinus communis]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/547 (76%), Positives = 462/547 (84%), Gaps = 20/547 (3%)

Query: 1   MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
           MLSASDAGRIGRLVLPKKCAEAYFPPIS PEGLPLKVQD+KG+EWIFQFRFWPNNNSRMY
Sbjct: 328 MLSASDAGRIGRLVLPKKCAEAYFPPISHPEGLPLKVQDAKGREWIFQFRFWPNNNSRMY 387

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 120
           VLEGVTPCIQNM+LQAGDIVTFSRLEPEGKLVMGFRK S+  +SDQ              
Sbjct: 388 VLEGVTPCIQNMRLQAGDIVTFSRLEPEGKLVMGFRKTSNVPSSDQ-------------- 433

Query: 121 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 180
             AELAD S WSKVDKSGYIA E L AKSSI RKRK++TLGSKSKRL+IENED+IELKLT
Sbjct: 434 --AELADSSPWSKVDKSGYIAKEVLEAKSSI-RKRKSSTLGSKSKRLRIENEDMIELKLT 490

Query: 181 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSK 240
           WEEAQGLLRPPP+++PSV+VIEGYEFEEYEDAPILGKPTIFATDN G+K+QWVQCEDC K
Sbjct: 491 WEEAQGLLRPPPDHIPSVLVIEGYEFEEYEDAPILGKPTIFATDNSGQKVQWVQCEDCFK 550

Query: 241 WRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQE 300
           WRK+PANA LPSKWTC+GN WDPERS+CS  QEL  EQ+EDL+   N  +SKKLKAAKQE
Sbjct: 551 WRKLPANADLPSKWTCTGNSWDPERSLCSATQELTAEQIEDLLPSCNIVASKKLKAAKQE 610

Query: 301 PDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQ 360
            + VEALEGLDTLANLAILGE E L ASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQ
Sbjct: 611 TENVEALEGLDTLANLAILGENEALPASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQ 670

Query: 361 TCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTG 420
           TCTCNVC TVKRRF TLM++REKKQSEK+AET+RKKQQQ   P+PEK  DDDP   S TG
Sbjct: 671 TCTCNVCQTVKRRFKTLMMKREKKQSEKEAETTRKKQQQ---PLPEKLLDDDPSPSSNTG 727

Query: 421 NNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDA 480
           ++SPN+KKV SEGSDDD +R+KSSTSPFKGQIDLNIQPEREEELSPGSDSGSM++++Q A
Sbjct: 728 SSSPNKKKVFSEGSDDDPNRMKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMMKMIQGA 787

Query: 481 TEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKAS 540
           TE+YLRQQ L SS  +T S   + L G   GE++ NGITL  S QD D+D+  + S K  
Sbjct: 788 TERYLRQQLLLSSDGDTVSAGKQALAGHAMGEEVGNGITLGSSLQDPDKDNSTTFSTKVP 847

Query: 541 ASISATG 547
           AS  A G
Sbjct: 848 ASSPAIG 854

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433878|ref|XP_004134723.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Cucumis sativus]

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/550 (71%), Positives = 454/550 (82%), Gaps = 5/550 (0%)

Query: 1   MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
           MLSASDAGRIGRLVLPKKCAEAYFP ISQPEGLPLKVQD+KGKEWIFQFRFWPNNNSRMY
Sbjct: 349 MLSASDAGRIGRLVLPKKCAEAYFPSISQPEGLPLKVQDAKGKEWIFQFRFWPNNNSRMY 408

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 120
           VLEGVTPCIQ+MQLQAGD VTFSRLEPEGKLVMGFRKAS+ +  DQ+NE NK   G P +
Sbjct: 409 VLEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRKASATA--DQENETNKTKNGAPVH 466

Query: 121 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 180
           G AELADP+SW+KVDKSGYIA E LGAK SISRKRKN+TLGSKSKRL+I+NED+IELK+T
Sbjct: 467 GDAELADPNSWTKVDKSGYIAKEVLGAKPSISRKRKNSTLGSKSKRLRIDNEDMIELKIT 526

Query: 181 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSK 240
           WEEAQGLLRPPPN VP+++VIEG+EFE YE+AP+LGKP+I   DN GE+IQW QCEDC K
Sbjct: 527 WEEAQGLLRPPPNQVPNILVIEGFEFEAYEEAPVLGKPSIIPPDNTGERIQWTQCEDCLK 586

Query: 241 WRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNP-ASSKKLKAAKQ 299
           WRK+PA+A LPSKWTCS N W+PERS CS  QEL  EQLE+L++P N  A  KK+KAAK 
Sbjct: 587 WRKLPASALLPSKWTCSDNSWEPERSFCSAPQELSTEQLEELLSPGNSVAPVKKMKAAKL 646

Query: 300 EPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHK 359
           EPD VEALEGLDTLANLAILGEGE      QATTKHPRHRPGCSCIVCIQPPSGKGPKHK
Sbjct: 647 EPDNVEALEGLDTLANLAILGEGEASQTPGQATTKHPRHRPGCSCIVCIQPPSGKGPKHK 706

Query: 360 QTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKT 419
           QTCTCNVCLTVKRRF TLMLRREKKQ EK+AET R++ + Q    P++S D++ L+CS T
Sbjct: 707 QTCTCNVCLTVKRRFRTLMLRREKKQFEKEAETMRQRHKFQDEMFPDRSMDEESLTCSNT 766

Query: 420 GNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQD 479
             +   E+  +++GSD+D +R K STSPFKGQIDLN+QPEREEELSPGSDSGSM+++LQD
Sbjct: 767 STSKLMEEGKMNDGSDEDPNRNKPSTSPFKGQIDLNMQPEREEELSPGSDSGSMMKMLQD 826

Query: 480 ATEKYLRQQRLSSSGVNTSSVD--NEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSV 537
             +++L QQR +S G  +SS D    G +    GE  SN I L  ++ D D+DH  +LS+
Sbjct: 827 TGDRFLEQQRSNSGGTRSSSSDPLEPGGEREHKGESSSNVIDLSSNNLDADKDHPATLSL 886

Query: 538 KASASISATG 547
             SAS+S TG
Sbjct: 887 NPSASMSTTG 896

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446313|ref|XP_003593434.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] gi|355482482|gb|AES63685.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/542 (74%), Positives = 449/542 (82%), Gaps = 9/542 (1%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 61
           LSASDAGRIGRLVLPKKCAE YFPPISQPEGLPLK+ D+KGKEWIFQFRFWPNNNSRMYV
Sbjct: 348 LSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYV 407

Query: 62  LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANG 121
           LEGVTPCIQ+MQLQAGD VTFSRLEPEG+LVMGFRKA++   SDQDNEANK G G  A  
Sbjct: 408 LEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNPLPSDQDNEANKTGNGFSA-P 466

Query: 122 HAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTW 181
             ELADPSSWS VDKSGYIA EALG+KS ISRKRKN  LGSKSKRLKIENED+IELK+TW
Sbjct: 467 EVELADPSSWSNVDKSGYIAKEALGSKSLISRKRKNNILGSKSKRLKIENEDIIELKITW 526

Query: 182 EEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKW 241
           +EAQGLLRPPPN+VPS+VVIEG+EFEEYEDAP+LGKP+IF +DN+GE+IQW +CEDC KW
Sbjct: 527 QEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPSIFTSDNMGERIQWARCEDCLKW 586

Query: 242 RKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEP 301
           RK+PA A LP+KWTCS N WDPERS CS AQEL  EQLE+L+ P N + SKK+KA KQ+P
Sbjct: 587 RKLPACALLPAKWTCSDNSWDPERSSCSAAQELTTEQLENLLPPCN-SVSKKMKATKQDP 645

Query: 302 DCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT 361
           D  EALEGLDTLANLAILGEGE L  SSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT
Sbjct: 646 DHAEALEGLDTLANLAILGEGEAL-PSSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT 704

Query: 362 CTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKK---QQQQKLPVPEKSADDDPLSCSK 418
           CTCNVCLTVKRRF TLMLRREKKQSEK+AET+RKK   Q  Q+LP  E   DDD L  S 
Sbjct: 705 CTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQNFQQLPSSEILLDDDSLHNSN 764

Query: 419 TGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQ 478
           TG++SP   K  ++GSDDD  RIKSS SPFKGQIDLNIQPEREEELSPGSDSG +++LL 
Sbjct: 765 TGDSSPTMNKEGNDGSDDDPHRIKSSVSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLH 824

Query: 479 D-ATEKYLRQQR-LSSSGVNTSSVDNEGLQGGVTGE-KISNGITLDGSHQDTDEDHHGSL 535
           D A E YL+QQ+ L +SG   SS       G V  E K+SNG+    S  + D++H  SL
Sbjct: 825 DAAAEMYLKQQQTLLNSGTGDSSGSQSQQVGDVVREVKLSNGVIHGSSSHNADKEHAQSL 884

Query: 536 SV 537
           S+
Sbjct: 885 SM 886

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116220|ref|XP_002317242.1| predicted protein [Populus trichocarpa] gi|222860307|gb|EEE97854.1| predicted protein [Populus trichocarpa]

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/550 (74%), Positives = 450/550 (81%), Gaps = 12/550 (2%)

Query: 1   MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
           MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPL+VQDSKGKEWIFQFRFWPNNNSRMY
Sbjct: 295 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLRVQDSKGKEWIFQFRFWPNNNSRMY 354

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQ----DNEANKAGTG 116
           VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSAS SDQ         K    
Sbjct: 355 VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASLSDQAWNFTWHVFKNLKF 414

Query: 117 IPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIE 176
           +  +  AEL  PS WSKVDKSGYIA E L AKSS  +KRK++TLGSKSKRL+IENED+IE
Sbjct: 415 MYQSNSAELG-PSPWSKVDKSGYIAKEVLEAKSS-IKKRKSSTLGSKSKRLRIENEDMIE 472

Query: 177 LKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCE 236
           LKLTWEEAQGLLRP P++VPS+VVIEG+EFEEYEDAP+LGKPTIFA DNVG KIQWVQCE
Sbjct: 473 LKLTWEEAQGLLRPAPDHVPSIVVIEGFEFEEYEDAPVLGKPTIFAMDNVGHKIQWVQCE 532

Query: 237 DCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKA 296
           DC KWRK+P N  LPSKWTCSGN WD ERS CS AQ+L  EQLE+L+   N  +SK+LKA
Sbjct: 533 DCLKWRKLPLNVLLPSKWTCSGNTWDSERSSCSAAQDLTSEQLENLLPSRNLVTSKRLKA 592

Query: 297 AKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGP 356
           AK++ D VEAL GLDTLANLAILGEGE L ASSQATTKHPRHRPGCSCIVCIQPPSGKGP
Sbjct: 593 AKKDIDNVEALGGLDTLANLAILGEGEALLASSQATTKHPRHRPGCSCIVCIQPPSGKGP 652

Query: 357 KHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDD--PL 414
           KHKQTCTCNVC TVKRRF TLM++REKKQSEK+AET+RK+Q+       EK  DDD  P 
Sbjct: 653 KHKQTCTCNVCQTVKRRFKTLMMKREKKQSEKEAETTRKQQESSA----EKLLDDDPSPS 708

Query: 415 SCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMI 474
           S + + + SPN+KK VSE SDDD +R+KSSTSPFKGQIDLNIQPERE+ELSPGSDSG M+
Sbjct: 709 SNAGSASGSPNKKKAVSEVSDDDPNRMKSSTSPFKGQIDLNIQPEREDELSPGSDSGGMM 768

Query: 475 RLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGS 534
           R+LQDA+E+YLR QR  SS  +     N  +  G   EK  +GI L GSHQD  EDH  +
Sbjct: 769 RMLQDASERYLRMQRFLSSDGDNIPASNHSVSSGGADEKAGSGIMLGGSHQDVSEDHPSA 828

Query: 535 LSVKASASIS 544
            S+ AS S S
Sbjct: 829 FSLIASESAS 838

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549411|ref|XP_003543087.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 1 [Glycine max]

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/539 (73%), Positives = 452/539 (83%), Gaps = 3/539 (0%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 61
           LSASDAGRIGRLVLPKKCAE YFPPISQPEGLPLK+ D+KGKEWIFQFRFWPNNNSRMYV
Sbjct: 349 LSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYV 408

Query: 62  LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANG 121
           LEGVTPCIQ+MQLQAGD VTFSRLEPEG+LVMGFRKASS   SDQ  E     T      
Sbjct: 409 LEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSVMPSDQFGENLNLYTESLHML 468

Query: 122 HAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTW 181
             ELADP+SWSKVDKSGYIA EALG+KS ISRKRK+  L SKSKRL+IENED+IELK+TW
Sbjct: 469 CVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSNILSSKSKRLRIENEDLIELKITW 528

Query: 182 EEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKW 241
           +EAQGLLRPPP+++PS+VVIEG+EFEEYE+AP+LGKPTIF +D+VGEKIQW QCEDC KW
Sbjct: 529 QEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDSVGEKIQWAQCEDCFKW 588

Query: 242 RKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEP 301
           RK+PA+A LPSKWTCS N WDPER  CS AQEL  EQLE+L+ P N A  KK+KA KQ+P
Sbjct: 589 RKLPASALLPSKWTCSDNSWDPERFSCSAAQELTAEQLENLLPPCNSAVPKKMKATKQDP 648

Query: 302 DCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT 361
           D  EALEGLDTLANLAILGEGE L AS+QATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT
Sbjct: 649 DNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT 708

Query: 362 CTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQK-LPVP--EKSADDDPLSCSK 418
           CTCNVCLTVKRRF TLMLRREKKQSEK+AET+RKKQQQQ  LP+P  E   D+D L CS 
Sbjct: 709 CTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHPLPLPSSEILLDEDSLPCSN 768

Query: 419 TGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQ 478
           TG++SPN+ K  ++GSDDD SRIKSS SPFKG+IDLNIQPEREEELSPGSDSG M++LL 
Sbjct: 769 TGDSSPNQNKEGNDGSDDDPSRIKSSASPFKGKIDLNIQPEREEELSPGSDSGGMMKLLH 828

Query: 479 DATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSV 537
           DATE+YL+QQ ++S   ++S   ++ +   +  +K+SNG+    S  +TD++H  SL +
Sbjct: 829 DATERYLKQQTVNSGTGDSSGSQSQLVGDAMREDKLSNGVAHGSSSHNTDKEHAQSLPM 887

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479362|ref|XP_004155579.1| PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os07g0563300-like [Cucumis sativus]

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/550 (71%), Positives = 455/550 (82%), Gaps = 5/550 (0%)

Query: 1   MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
           MLSASDAGRIGRLVLPKKCAEAYFP ISQPEGLPLKVQD+KGKEWIFQFRFWPNNNSRMY
Sbjct: 352 MLSASDAGRIGRLVLPKKCAEAYFPSISQPEGLPLKVQDAKGKEWIFQFRFWPNNNSRMY 411

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 120
           VLEGVTPCIQ+MQLQAGD VTFSRLEPEGKLVMGFRKAS+ +  DQ+NE NK   G P +
Sbjct: 412 VLEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRKASATA--DQENETNKTKNGAPVH 469

Query: 121 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 180
           G AELADP+SW+KVDKSGYIA E LGAK SISRKRKN+TLGSKSKRL+I+NED+IELK+T
Sbjct: 470 GDAELADPNSWTKVDKSGYIAKEVLGAKPSISRKRKNSTLGSKSKRLRIDNEDMIELKIT 529

Query: 181 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSK 240
           WEEAQGLLRPPPN VP+++VIEG+EFEEYE+AP+LGKP+I   DN GE+IQW QCEDC K
Sbjct: 530 WEEAQGLLRPPPNQVPNILVIEGFEFEEYEEAPVLGKPSIIPPDNTGERIQWTQCEDCLK 589

Query: 241 WRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNP-ASSKKLKAAKQ 299
           WRK+PA+A LPSKWTCS N W+PERS CS  QEL  EQLE+L++P N  A  KK+KAAK 
Sbjct: 590 WRKLPASALLPSKWTCSDNSWEPERSFCSAPQELSTEQLEELLSPGNSVAPVKKMKAAKL 649

Query: 300 EPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHK 359
           EPD VEALEGLDTLANLAILGEGE      QATTKHPRHRPGCSCIVCIQPPSGKGPKHK
Sbjct: 650 EPDNVEALEGLDTLANLAILGEGEASQTPGQATTKHPRHRPGCSCIVCIQPPSGKGPKHK 709

Query: 360 QTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKT 419
           QTCTCNVCLTVKRRF TLMLRREKKQ EK+AET R++ + Q    P++S D++ L+CS T
Sbjct: 710 QTCTCNVCLTVKRRFRTLMLRREKKQFEKEAETMRQRHKFQDEMFPDRSMDEESLTCSNT 769

Query: 420 GNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQD 479
             +   E+  +++GSD+D +R K STSPFKGQIDLN+QPEREEELSPGSDSGSM+++LQD
Sbjct: 770 STSKLMEEGKMNDGSDEDPNRNKPSTSPFKGQIDLNMQPEREEELSPGSDSGSMMKMLQD 829

Query: 480 ATEKYLRQQRLSSSGVNTSSVD--NEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSV 537
             +++L QQR +S G  +SS D    G +    GE  SN I L  ++ D D+DH  +LS+
Sbjct: 830 TGDRFLEQQRSNSGGTRSSSSDPLEPGGEREHKGESSSNVIDLSSNNLDADKDHPATLSL 889

Query: 538 KASASISATG 547
             SAS+S TG
Sbjct: 890 NPSASMSTTG 899

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549413|ref|XP_003543088.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 2 [Glycine max]

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/539 (73%), Positives = 450/539 (83%), Gaps = 19/539 (3%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 61
           LSASDAGRIGRLVLPKKCAE YFPPISQPEGLPLK+ D+KGKEWIFQFRFWPNNNSRMYV
Sbjct: 331 LSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYV 390

Query: 62  LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANG 121
           LEGVTPCIQ+MQLQAGD VTFSRLEPEG+LVMGFRKASS   SDQ               
Sbjct: 391 LEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSVMPSDQ--------------- 435

Query: 122 HAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTW 181
             ELADP+SWSKVDKSGYIA EALG+KS ISRKRK+  L SKSKRL+IENED+IELK+TW
Sbjct: 436 -VELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSNILSSKSKRLRIENEDLIELKITW 494

Query: 182 EEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKW 241
           +EAQGLLRPPP+++PS+VVIEG+EFEEYE+AP+LGKPTIF +D+VGEKIQW QCEDC KW
Sbjct: 495 QEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDSVGEKIQWAQCEDCFKW 554

Query: 242 RKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEP 301
           RK+PA+A LPSKWTCS N WDPER  CS AQEL  EQLE+L+ P N A  KK+KA KQ+P
Sbjct: 555 RKLPASALLPSKWTCSDNSWDPERFSCSAAQELTAEQLENLLPPCNSAVPKKMKATKQDP 614

Query: 302 DCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT 361
           D  EALEGLDTLANLAILGEGE L AS+QATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT
Sbjct: 615 DNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT 674

Query: 362 CTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQK-LPVP--EKSADDDPLSCSK 418
           CTCNVCLTVKRRF TLMLRREKKQSEK+AET+RKKQQQQ  LP+P  E   D+D L CS 
Sbjct: 675 CTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHPLPLPSSEILLDEDSLPCSN 734

Query: 419 TGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQ 478
           TG++SPN+ K  ++GSDDD SRIKSS SPFKG+IDLNIQPEREEELSPGSDSG M++LL 
Sbjct: 735 TGDSSPNQNKEGNDGSDDDPSRIKSSASPFKGKIDLNIQPEREEELSPGSDSGGMMKLLH 794

Query: 479 DATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSV 537
           DATE+YL+QQ ++S   ++S   ++ +   +  +K+SNG+    S  +TD++H  SL +
Sbjct: 795 DATERYLKQQTVNSGTGDSSGSQSQLVGDAMREDKLSNGVAHGSSSHNTDKEHAQSLPM 853

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555034|ref|XP_003545844.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Glycine max]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/544 (72%), Positives = 449/544 (82%), Gaps = 29/544 (5%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 61
           LSASDAGRIGRLVLPKKCAE YFPPISQPEGLPLK+ D+KGKEWIFQFRFWPNNNSRMYV
Sbjct: 330 LSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYV 389

Query: 62  LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANG 121
           LEGVTPCIQ+MQLQAGD VTFSRLEPEG+LVMGFRKASSA  SDQ               
Sbjct: 390 LEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQ--------------- 434

Query: 122 HAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTW 181
             ELADP+SWSKVDKSGYIA EALG+KS ISRKRK+  LGSKSKRL+IENED+IELK+TW
Sbjct: 435 -VELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSNILGSKSKRLRIENEDLIELKITW 493

Query: 182 EEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKW 241
           +EAQGLLRPPP+++PS+VVIEG+EFEEYE+AP+LGKPTIF +D+VGEKIQW QCEDC KW
Sbjct: 494 QEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDSVGEKIQWAQCEDCFKW 553

Query: 242 RKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEP 301
           RK+PA+A LPSKWTCS N WDPERS CS AQEL  EQLE+L+ P + A  KK+KAAKQ+P
Sbjct: 554 RKLPASALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPCSSAVPKKMKAAKQDP 613

Query: 302 DCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT 361
           D  EALEGLDTLANLAILGEGE L AS+QATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT
Sbjct: 614 DNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQT 673

Query: 362 CTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKS---ADDDPLSCSK 418
           CTCNVCLTVKRRF TLMLRREKKQSEK+AET+RKKQQQQ       S    D+D L CS 
Sbjct: 674 CTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHPQPLPSSEILLDEDSLPCSN 733

Query: 419 TGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQ 478
           TG++SPN+ K  ++GSDDD +RIKSS  PFKGQIDLNIQPEREEELSPGSDSG M++LL 
Sbjct: 734 TGDSSPNQNKEGNDGSDDDPNRIKSSALPFKGQIDLNIQPEREEELSPGSDSGGMMKLLH 793

Query: 479 DATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTG-----EKISNGITLDGSHQDTDEDHHG 533
           DATE+YL+QQ      VN+ + D+ G Q  + G     +K+SNG+       +TD++H  
Sbjct: 794 DATERYLKQQT-----VNSGTGDSSGSQSRLVGDAMREDKLSNGVAHGSGSHNTDKEHAQ 848

Query: 534 SLSV 537
           SLS+
Sbjct: 849 SLSM 852

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239983848|sp|Q0D5G4.2|Y7633_ORYSJ RecName: Full=B3 domain-containing protein Os07g0563300

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 298/507 (58%), Positives = 358/507 (70%), Gaps = 43/507 (8%)

Query: 1   MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
           MLSASDAGRIGRLVLPKKCAEAYFP ISQ EGLPLKVQD+ GKEW+FQFRFWPNNNSRMY
Sbjct: 456 MLSASDAGRIGRLVLPKKCAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMY 515

Query: 61  VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIP-- 118
           VLEGVTPCIQ+MQLQAGD VTFSR++PEGKLVMGFRKA++ SA +QD     A   +P  
Sbjct: 516 VLEGVTPCIQSMQLQAGDTVTFSRIDPEGKLVMGFRKATNLSA-EQDQPTKPANGVLPPP 574

Query: 119 -ANGHAELADPS------------------------SWSKVDKSGYIATEALGAKSS--I 151
            AN    + D S                        +  K+DK      E  G  SS  +
Sbjct: 575 EANNKVVVPDSSPNAAVPRPIKVNTESKSSSPVEQATACKIDKGALPQKEGPGTSSSSPL 634

Query: 152 SRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYED 211
             KRK T++G K KR  +++E+ +ELK+TWEEAQ LLRPPP   PS+VV++G+EFEEYE+
Sbjct: 635 PVKRKATSVGPKIKRFHMDSEESMELKITWEEAQELLRPPP-KAPSIVVVDGHEFEEYEE 693

Query: 212 APILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVA 271
            PILG+ T F TD  GE  QW QCEDCSKWRK+P +A LPSKWTCS N WD ERS C  A
Sbjct: 694 PPILGRRTYFVTDQSGENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSA 753

Query: 272 QELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQA 331
           QE+  E+L ++I P  P ++KK K  K + D ++  +GLDTLANLAILGEGE L   SQ 
Sbjct: 754 QEINMEELGEMI-PIKPGAAKKTK-GKVDTDNIDVSDGLDTLANLAILGEGESL--PSQP 809

Query: 332 TTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKK-QSEKDA 390
           TT+HPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVC+TV+RRF TLM+RREK+ QSEKD+
Sbjct: 810 TTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDS 869

Query: 391 ETSRKKQQ-QQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVS-EGSDDDSSRIKSSTSPF 448
              RK++  Q   PVP+  +   P S S     SP+++   + EG +D S   K ++SP 
Sbjct: 870 GVPRKREPGQSSEPVPQSGSGAHPTSTS-----SPHQRADTNGEGPEDMSIDNKRTSSPV 924

Query: 449 KGQIDLNIQPEREEELSPGSDSGSMIR 475
           K QIDLN QPERE+E SP SD+  ++R
Sbjct: 925 KNQIDLNSQPEREDEQSPKSDATRLLR 951

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	547
TAIR|locus:2116592	780	HSL1 "HSI2-like 1" [Arabidopsi	0.751	0.526	0.514	6.8e-117
TAIR|locus:2064417	790	HSI2 "high-level expression of	0.791	0.548	0.468	6.7e-104
UNIPROTKB|Q7XKC5	433	LOC_Os04g58000 "B3 domain-cont	0.177	0.224	0.469	7.4e-15
TAIR|locus:2088439	313	FUS3 "FUSCA 3" [Arabidopsis th	0.193	0.338	0.403	2.1e-14
UNIPROTKB|Q6Z1Z3	362	IDEF1 "B3 domain-containing pr	0.175	0.265	0.444	9.1e-14
UNIPROTKB|A4LBC0	402	LFL1 "B3 domain-containing pro	0.254	0.345	0.342	1.7e-13
TAIR|locus:2039165	244	ABS2 "ABNORMAL SHOOT 2" [Arabi	0.186	0.418	0.383	4.2e-13
UNIPROTKB|P37398	727	VP1 "B3 domain-containing prot	0.202	0.152	0.370	7.8e-12
TAIR|locus:2093166	720	ABI3 "AT3G24650" [Arabidopsis	0.208	0.158	0.367	9.8e-12
TAIR|locus:2032170	363	LEC2 "LEAFY COTYLEDON 2" [Arab	0.199	0.300	0.362	1.8e-11

TAIR|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1105 (394.0 bits), Expect = 6.8e-117, Sum P(2) = 6.8e-117
 Identities = 216/420 (51%), Positives = 286/420 (68%)

Query:     1 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 60
             +LSASDAGRIGRLVLPK CAEAYFPPIS PEGLPLK+QD KGKEW+FQFRFWPNNNSRMY
Sbjct:   289 VLSASDAGRIGRLVLPKACAEAYFPPISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMY 348

Query:    61 VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 120
             VLEGVTPCIQ+MQLQAGD VTFSR EPEGKLVMG+RKA++++A+     +++    + +N
Sbjct:   349 VLEGVTPCIQSMQLQAGDTVTFSRTEPEGKLVMGYRKATNSTATQMFKGSSEPNLNMFSN 408

Query:   121 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNT-TLGSKSKRLKIENEDVIELKL 179
                      +WSK++KS  +A + L  +SS++  RK    +G+KSKRL I++ DV+ELK+
Sbjct:   409 SLNPGCGDINWSKLEKSEDMAKDNLFLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKI 468

Query:   180 TWEEAQGLLRXXXXXXXXXXXIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCS 239
             TWEEAQ LLR           +E  +FEEY++ P+ GK T+F +   GE+ QWVQC+ C 
Sbjct:   469 TWEEAQELLRPPQSTKPSIFTLENQDFEEYDEPPVFGKRTLFVSRQTGEQEQWVQCDACG 528

Query:   240 KWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQ 299
             KWR++P +  LP KW+CS NL DP RS CS   EL   + + L+  +     ++L ++ +
Sbjct:   529 KWRQLPVDILLPPKWSCSDNLLDPGRSSCSAPDELSPREQDTLVRQSKEFKRRRLASSNE 588

Query:   300 EPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHK 359
             + +  +    L++L N  I   GE    +  ATTKHPRHR GCSCIVC QPPSGKG KHK
Sbjct:   589 KLNQSQDASALNSLGNAGITTTGEQGEITVAATTKHPRHRAGCSCIVCSQPPSGKG-KHK 647

Query:   360 QTCTCNVCLTVKRRFHTLMLRREKK----QSEKDAETS---RKKQQQQKLPVPEKSADDD 412
              +CTC VC  VKRRF TLMLR+  K    Q+ + A++    R + + + +P  E +A ++
Sbjct:   648 PSCTCTVCEAVKRRFRTLMLRKRNKGEAGQASQQAQSQSECRDETEVESIPAVELAAGEN 707

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009790 "embryo development" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048316 "seed development" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 215/459 (46%), Positives = 295/459 (64%)

Query:     2 LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 61
             LSASDAGRIGRLVLPK CAEAYFPPISQ EG+PLK+QD +G+EW FQFR+WPNNNSRMYV
Sbjct:   299 LSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDVRGREWTFQFRYWPNNNSRMYV 358

Query:    62 LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSAS----------ASDQDNEAN 111
             LEGVTPCIQ+M LQAGD VTFSR++P GKL+MG RKA++A            S +D  ++
Sbjct:   359 LEGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAANAGDMQGCGLTNGTSTEDTSSS 418

Query:   112 KAGTGIPA-NGHAELA-DPSSWSKVDKSGYIATEALGAK-----SSISRKRKNTTLGSKS 164
                   P+ NG + ++  P   + + ++  + +E  G +     + +  K++  T+G+K+
Sbjct:   419 GVTENPPSINGSSCISLIPKELNGMPEN--LNSETNGGRIGDDPTRVKEKKRTRTIGAKN 476

Query:   165 KRLKIENEDVIELKLTWEEAQGLLRXXXXXXXXXXXIEGYEFEEYEDAPILGKPTIFATD 224
             KRL + +E+ +EL+LTWEEAQ LLR           IE  E EEY++ P+ GK TI  T 
Sbjct:   477 KRLLLHSEESMELRLTWEEAQDLLRPSPSVKPTIVVIEEQEIEEYDEPPVFGKRTIVTTK 536

Query:   225 NVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIA 284
               GE+ +W  C+DCSKWR++P +A L  KWTC  N+WD  R  CS  +E  +E LE+++ 
Sbjct:   537 PSGEQERWATCDDCSKWRRLPVDALLSFKWTCIDNVWDVSRCSCSAPEESLKE-LENVLK 595

Query:   285 PNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSC 344
                    ++   ++      E   GLD LA+ A+LG+  G       TT+HPRHR GCSC
Sbjct:   596 VGREHKKRRTGESQAAKSQQEPC-GLDALASAAVLGDTIG-EPEVATTTRHPRHRAGCSC 653

Query:   345 IVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSR-KKQQQQKLP 403
             IVCIQPPSGKG +HK TC C VC TVKRRF TLM+RR+KKQ E+D   +  KK++  +L 
Sbjct:   654 IVCIQPPSGKG-RHKPTCGCTVCSTVKRRFKTLMMRRKKKQLERDVTAAEDKKKKDMELA 712

Query:   404 VPEKSADDDPLSCSKTGNNS-P-NEKKVVSEGSDDDSSR 440
               +KS ++  ++ ++   NS P N++ V +   + + SR
Sbjct:   713 ESDKSKEEKEVNTARIDLNSDPYNKEDVEAVAVEKEESR 751

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=TAS

GO:0009744 "response to sucrose stimulus" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q7XKC5 LOC_Os04g58000 "B3 domain-containing protein Os04g0676600" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 217 (81.4 bits), Expect = 7.4e-15, P = 7.4e-15
 Identities = 46/98 (46%), Positives = 61/98 (62%)

Query:     2 LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-WIFQFRFWPNNNSRMY 60
             L+ SD G IGR+V+PK+ AEA+ P + Q EG+ LK+ D K +  W F++RFWPNN SRMY
Sbjct:   301 LTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYRFWPNNKSRMY 360

Query:    61 VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 98
             VLE     ++   LQ GDI    +     KLV+   KA
Sbjct:   361 VLESTGGFVKQHVLQTGDIFIIYKSSESEKLVVRGEKA 398

GO:0003677 "DNA binding" evidence=IDA

TAIR|locus:2088439 FUS3 "FUSCA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 44/109 (40%), Positives = 62/109 (56%)

Query:     2 LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-WIFQFRFWPNNNSRMY 60
             L  SD   + R++LPKK AEA+ P +   EG+P++++D  G   W F++R+WPNNNSRMY
Sbjct:    96 LKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWTFKYRYWPNNNSRMY 155

Query:    61 VLEGVTPCIQNMQLQAGD-IVTFSRLEPEGKLVMGFRKASSASASDQDN 108
             VLE     +    LQ GD I+ +  L     ++   RKAS     D  N
Sbjct:   156 VLENTGDFVNAHGLQLGDFIMVYQDLYSNNYVIQA-RKASEEEEVDVIN 203

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010116 "positive regulation of abscisic acid biosynthetic process" evidence=IMP

GO:0010373 "negative regulation of gibberellin biosynthetic process" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

UNIPROTKB|Q6Z1Z3 IDEF1 "B3 domain-containing protein IDEF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 205 (77.2 bits), Expect = 9.1e-14, P = 9.1e-14
 Identities = 44/99 (44%), Positives = 61/99 (61%)

Query:     2 LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSK-GKEWIFQFRFWPNNNSRMY 60
             L+ SD G +GR+VLPKK AEA  PP+ Q + L L + D      W F++R+WPNN SRMY
Sbjct:   257 LTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFKYRYWPNNKSRMY 316

Query:    61 VLEGVTPCIQNMQLQAGD-IVTFSRLEPEGKLVMGFRKA 98
             +L+     ++   LQAGD I+ +  L P GK ++   KA
Sbjct:   317 ILDSAGEFLKTHGLQAGDVIIIYKNLAP-GKFIIRGEKA 354

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

UNIPROTKB|A4LBC0 LFL1 "B3 domain-containing protein LFL1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 204 (76.9 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 49/143 (34%), Positives = 75/143 (52%)

Query:     2 LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLP-LKVQDSKGKE-WIFQFRFWPNNNSRM 59
             L  SD  ++GR+VLPKK AEAY P ++  +G   L + D +  + W F++R+WPNN SRM
Sbjct:   185 LRYSDVSQLGRIVLPKKEAEAYLPILTSKDGKKSLCMHDLQNAQLWTFKYRYWPNNKSRM 244

Query:    60 YVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPA 119
             YVLE     ++   LQ GD +   + +   + V+G +KA    A+          T  P 
Sbjct:   245 YVLENTGDYVRTHDLQLGDSIVIYKDDENNRFVIGAKKAGDQQAATVPQVDEHISTLFPI 304

Query:   120 NGHAELADPSS--WSKVDKSGYI 140
                A++ D  S    +VD S ++
Sbjct:   305 FPIAQVDDYLSPMAPQVDISAFV 327

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2039165 ABS2 "ABNORMAL SHOOT 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 43/112 (38%), Positives = 69/112 (61%)

Query:     2 LSASDAGRIGRLVLPKKCAEAYFPPISQP-----EGLPLKVQDSKGKEWIFQFRFWPNNN 56
             L+ SD G++ RLV+PK+ AE YFP  +       +GL L  +D +GK W F++ +W  N+
Sbjct:    42 LTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYW--NS 99

Query:    57 SRMYVL-EGVTPCIQNMQLQAGDIVTFSRLEPEG-KLVMGFRK-ASSASASD 105
             S+ YVL +G +  ++   L AGD+V F R   +G +  +G+R+   S+S+SD
Sbjct:   100 SQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRRRGDSSSSSD 151

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

UNIPROTKB|P37398 VP1 "B3 domain-containing protein VP1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 194 (73.4 bits), Expect = 7.8e-12, P = 7.8e-12
 Identities = 43/116 (37%), Positives = 68/116 (58%)

Query:     1 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQD-SKGKEWIFQFRFWPNNNSRM 59
             +L  SD G +GR+VLPK+ AE + P +   +G+ + ++D    + W  ++RFWPNN SRM
Sbjct:   540 VLKQSDVGSLGRIVLPKE-AEVHLPELKTRDGVSIPMEDIGTSQVWNMRYRFWPNNKSRM 598

Query:    60 YVLEGVTPCIQNMQLQAGD-IVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAG 114
             Y+LE     +++ +LQ GD IV +S ++    L+ G  K   A A +Q N +   G
Sbjct:   599 YLLENTGDFVRSNELQEGDFIVIYSDIKSGKYLIRGV-KVRRA-AQEQGNSSGAVG 652

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009790 "embryo development" evidence=IEP

TAIR|locus:2093166 ABI3 "AT3G24650" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 43/117 (36%), Positives = 64/117 (54%)

Query:     1 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQD-SKGKEWIFQFRFWPNNNSRM 59
             +L  SD G +GR+VLPKK AE + P +   +G+ L ++D    + W  ++RFWPNN SRM
Sbjct:   575 VLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMRYRFWPNNKSRM 634

Query:    60 YVLEGVTPCIQNMQLQAGD-IVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGT 115
             Y+LE     ++   LQ GD IV +S ++    L+ G  K    S    +   + A T
Sbjct:   635 YLLENTGDFVKTNGLQEGDFIVIYSDVKCGKYLIRGV-KVRQPSGQKPEAPPSSAAT 690

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IEP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IDA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2032170 LEC2 "LEAFY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 41/113 (36%), Positives = 62/113 (54%)

Query:     2 LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKE-WIFQFRFWPNNNSRMY 60
             L  SD G +GR+VLPK+ AEA  P +S  EG+ ++++D    + W F+++FW NN SRMY
Sbjct:   175 LKNSDVGSLGRIVLPKRDAEANLPKLSDKEGIVVQMRDVFSMQSWSFKYKFWSNNKSRMY 234

Query:    61 VLEGVTPCIQNMQLQAGDIVTFSRLEPEGK-LVMGFRKASSASASDQDNEANK 112
             VLE     ++    + GD +T    E E K L       S      ++NE+ +
Sbjct:   235 VLENTGEFVKQNGAEIGDFLTI--YEDESKNLYFAMNGNSGKQNEGRENESRE 285

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010344 "seed oilbody biogenesis" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

GO:0010601 "positive regulation of auxin biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	547
cd10017	98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	6e-20
pfam02362	97	pfam02362, B3, B3 DNA binding domain	9e-19
smart01019	96	smart01019, B3, B3 DNA binding domain	7e-16
pfam07496	50	pfam07496, zf-CW, CW-type Zinc Finger	3e-12
cd10015	109	cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o	2e-07

>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain

 Score = 84.7 bits (210), Expect = 6e-20
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 2  LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 61
          L+ SD   +GRLVLPKK A+A+ PP    EG+ + ++D  GK+W  + +   N+  RM +
Sbjct: 7  LTPSDVSSLGRLVLPKKFAKAHLPP---KEGVEVTLEDPDGKKWTVKLKKRKNSG-RMVL 62

Query: 62 LEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 97
            G    ++   L+ GD + F       K  +   +
Sbjct: 63 SGGWKEFVRANGLKEGDFLVFELDGRNSKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain

 Score = 81.2 bits (201), Expect = 9e-19
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 2  LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 61
          L+ SD  + GRLVLPKK AE         +G  + + D  GK W  + R+    + R Y+
Sbjct: 5  LTPSDVSKDGRLVLPKKFAEENGLN---KKGQEITLLDPDGKSWTVKLRYR--KSGRRYL 59

Query: 62 LE-GVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAS 99
          L  G    ++   L+AGD + F +L+  GK V+G  + S
Sbjct: 60 LTSGWKEFVKANGLKAGDSLVF-KLDGGGKFVVGIFRKS 97

This is a family of plant transcription factors with various roles in development, the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by. Length = 97

>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain

 Score = 72.7 bits (179), Expect = 7e-16
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 8/98 (8%)

Query: 2  LSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYV 61
          L+ SD  + GRLVLPK+ AE+  PP+   E   + + D  GK W  + ++    +S M++
Sbjct: 5  LTTSDVSKHGRLVLPKQFAESNGPPLKPKE---ITLLDPDGKSWKVKLKYR--GSSGMFL 59

Query: 62 LEGVTP--CIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 97
          L G        N  L+AGD +TF        +V  FRK
Sbjct: 60 LTGGWKEFVKAN-GLKAGDSLTFELDGNGEFVVSIFRK 96

Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. Length = 96

>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger

 Score = 61.3 bits (149), Expect = 3e-12
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 231 QWVQCEDCSKWRKVPANA-----RLPSKWTCSGNLWDPERSVCSVAQEL 274
            WVQC+ C KWRK+P        +LP  W CS N  DP  + C   +E+
Sbjct: 2   YWVQCDKCLKWRKLPEEYEEIRSKLPDPWFCSMNP-DPAYNSCDDPEEI 49

This domain appears to be a zinc finger. The alignment shows four conserved cysteine residues and a conserved tryptophan. It was first identified by, and is predicted to be a "highly specialised mononuclear four-cysteine zinc finger...that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including...chromatin methylation status and early embryonic development." Weak homology to pfam00628 further evidences these predictions (personal obs: C Yeats). Twelve different CW-domain-containing protein subfamilies are described, with different subfamilies being characteristic of vertebrates, higher plants and other animals in which these domain is found. Length = 50

>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 2  LSASDAGRIG----RLVLPKKCAEAYFPPISQPEGLP----LKVQD-SKGKEWIFQFRFW 52
          LSA+D G  G     L +PK   E + P I+          L + D S  ++W  +  F+
Sbjct: 7  LSANDTGATGGHQVGLYIPKGIVEKFPPSINHTREANPSIFLTMHDISDCRDWEARAIFY 66

Query: 53 PNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSR 84
           +N +   +  G    ++   L  GD+   + 
Sbjct: 67 NSNRNEKRLTRGGRGFVKQNPLNTGDLTLIAF 98

This family contains the N-terminal DNA binding domain of type IIE restriction endonuclease EcoRII-like proteins, the C-terminal DNA binding domain of type IIS restriction endonuclease BfiI-like proteins and plant-specific B3 proteins. Type II restriction endonucleases are components of restriction modification (RM) systems that protect bacteria and archaea against invading foreign DNA. They usually function as homodimers or homotetramers that cleave DNA at defined sites of 4 to 8 bp in length, and they require Mg2+, not ATP or GTP, for catalysis. EcoRII is specific for the 5'-CCWGG sequence (W stands for A or T). EcoRII consists of 2 domains, the C-terminal catalytic/dimerization domain (EcoRII-C), and the N-terminal effector DNA binding domain (EcoRII-N). BfiI is unique in cleaving DNA at fixed positions downstream of an asymmetric sequence in the absence of Mg2+. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. B3 proteins are a family of plant-specific transcription factors, involved in a great variety of processes, including seed development and auxin response. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	547
PF07496	50	zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi	99.63
PF02362	100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.61
PF09217	156	EcoRII-N: Restriction endonuclease EcoRII, N-termi	97.79
PF03754	114	DUF313: Domain of unknown function (DUF313) ; Inte	97.07
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	80.2

>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.63  E-value=6.2e-17  Score=125.43  Aligned_cols=45  Identities=42%  Similarity=1.032  Sum_probs=30.4

Q ss_pred             CceEecCCcccccccCCCC-----CCCCCcEeecCCCCCCCCCCCcccccC
Q 008961          230 IQWVQCEDCSKWRKVPANA-----RLPSKWTCSGNLWDPERSVCSVAQELR  275 (547)
Q Consensus       230 ~~WVQCD~C~KWRrLP~~~-----~lP~~W~CsmN~WDp~~~sCsaPEE~~  275 (547)
                      +.|||||.|+|||+||.++     .+|+.|+|+||+ |+.+++|++|||.+
T Consensus         1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~-~~~~~sC~~pee~e   50 (50)
T PF07496_consen    1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNP-DPPFNSCDAPEEIE   50 (50)
T ss_dssp             -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS--CCC-STTS--SS-
T ss_pred             CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCC-CCCCCCCCCcccCC
Confidence            4799999999999999987     468999999999 99999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species

Probab=99.61  E-value=3.1e-15  Score=125.53  Aligned_cols=96  Identities=22%  Similarity=0.415  Sum_probs=67.3

Q ss_pred             CCCcCcCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeecCchhHhhhcCCCCCCEE
Q 008961            1 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIV   80 (547)
Q Consensus         1 vLT~SDVg~lgRLVIPK~~AE~~FP~Ld~~~G~~L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLtGWs~FVRsK~LqaGDtV   80 (547)
                      +|+++|+...++|.||++.++.|.  +....++.|.+.|..|+.|.+++.++. +..+.|+..||..||++++|++||.|
T Consensus         4 ~l~~s~~~~~~~l~iP~~f~~~~~--~~~~~~~~v~l~~~~g~~W~v~~~~~~-~~~~~~l~~GW~~Fv~~n~L~~GD~~   80 (100)
T PF02362_consen    4 VLKPSDVSSSCRLIIPKEFAKKHG--GNKRKSREVTLKDPDGRSWPVKLKYRK-NSGRYYLTGGWKKFVRDNGLKEGDVC   80 (100)
T ss_dssp             E--TTCCCCTT-EEE-HHHHTTTS----SS--CEEEEEETTTEEEEEEEEEEC-CTTEEEEETTHHHHHHHCT--TT-EE
T ss_pred             EEEccCcCCCCEEEeCHHHHHHhC--CCcCCCeEEEEEeCCCCEEEEEEEEEc-cCCeEEECCCHHHHHHHcCCCCCCEE
Confidence            478999998889999999999982  222357899999999999999999883 44454555699999999999999999


Q ss_pred             EEEEec-CCCeEEEEEEecC
Q 008961           81 TFSRLE-PEGKLVMGFRKAS   99 (547)
Q Consensus        81 vF~R~e-~~GkL~IGvRRa~   99 (547)
                      +|+... ...++.|.+.|++
T Consensus        81 ~F~~~~~~~~~~~v~i~~~~  100 (100)
T PF02362_consen   81 VFELIGNSNFTLKVHIFRKS  100 (100)
T ss_dssp             EEEE-SSSCE-EEEEEE---
T ss_pred             EEEEecCCCceEEEEEEECc
Confidence            999875 3456799988763

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=97.79  E-value=4.2e-05  Score=72.58  Aligned_cols=82  Identities=24%  Similarity=0.398  Sum_probs=53.2

Q ss_pred             CCCcCcCCCCC----cEEeehhhhhhcCCCCCC----CCCceEEEEeCCC--CeEEEEEEEcCCC-----CCcceeecCc
Q 008961            1 MLSASDAGRIG----RLVLPKKCAEAYFPPISQ----PEGLPLKVQDSKG--KEWIFQFRFWPNN-----NSRMYVLEGV   65 (547)
Q Consensus         1 vLT~SDVg~lg----RLVIPK~~AE~~FP~Ld~----~~G~~L~v~D~~G--k~W~FR~~yw~Nn-----~SR~YLLtGW   65 (547)
                      .||+.|+|.+|    ++.|||..++.+||.+..    .+...|.+++..+  ..|.|||+|+ ||     .+..|.+++|
T Consensus        13 ~LSaNDtGaTGgHQaGiyIpk~~~~~lFp~~~~~~~~Np~~~~~~~~~s~~~~~~~~r~iYY-nn~~~~gTRNE~RIT~~   91 (156)
T PF09217_consen   13 RLSANDTGATGGHQAGIYIPKSAAELLFPSINHTKEENPDIWLKARWQSHFVTDSQVRFIYY-NNRLFGGTRNEYRITRF   91 (156)
T ss_dssp             E--CCCCTTTSSS--EEEE-HHHHHHH-GGG-SSSSSS-EEEEEEEETTTT---EEEEEEEE--CCCTTSS--EEEEE--
T ss_pred             EccCCCCCCcCcccceeEecccHHHHhCCCCCcccccCCceeEEEEECCCCccceeEEEEEE-cccccCCCcCceEEeee
Confidence            48999999764    899999999999998764    4568899999877  6789999999 44     3678999999


Q ss_pred             hhHhhhcC-CCCCCEEEEE
Q 008961           66 TPCIQNMQ-LQAGDIVTFS   83 (547)
Q Consensus        66 s~FVRsK~-LqaGDtVvF~   83 (547)
                      +.+..--+ =.+||.++|.
T Consensus        92 G~~~~~~~~~~tGaL~vla  110 (156)
T PF09217_consen   92 GRGFPLQNPENTGALLVLA  110 (156)
T ss_dssp             -TTSGGG-GGGTT-EEEEE
T ss_pred             cCCCccCCccccccEEEEE
Confidence            86665333 3678888776

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the N-terminal effector-binding domain of the type II restriction endonuclease EcoRII, which has a DNA recognition fold, allowing for binding to 5'-CCWGG sequences. It assumes a structure composed of an eight-stranded beta-sheet with the strands in the order of b2, b5, b4, b3, b7, b6, b1 and b8. They are mostly antiparallel to each other except that b3 is parallel to b7. Alternatively, it may also be viewed as consisting of two mini beta-sheets of four antiparallel beta-strands, sheet I from beta-strands b2, b5, b4, b3 and sheet II from strands b7, b6, b1, b8, folded into an open mixed beta-barrel with a novel topology. Sheet I has a simple Greek key motif while sheet II does not []. The domain represented by this entry is only found in bacterial proteins.; PDB: 3HQF_A 1NA6_A.

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function

Probab=97.07  E-value=0.0012  Score=59.97  Aligned_cols=69  Identities=20%  Similarity=0.406  Sum_probs=55.0

Q ss_pred             CCCcCcCC-CCCcEEeehhhhhhcCCCCC---------------CCCCceEEEEeCCCCeEEEEEEEcCC-CCCcceeec
Q 008961            1 MLSASDAG-RIGRLVLPKKCAEAYFPPIS---------------QPEGLPLKVQDSKGKEWIFQFRFWPN-NNSRMYVLE   63 (547)
Q Consensus         1 vLT~SDVg-~lgRLVIPK~~AE~~FP~Ld---------------~~~G~~L~v~D~~Gk~W~FR~~yw~N-n~SR~YLLt   63 (547)
                      .|++|||. ..+||.||...... ..+|.               ...|+.+.+.|..++.|..+++.|.- +..-.|+|.
T Consensus        27 ~L~~tDv~~~qsRLsmP~~qi~~-~dFLt~eE~~~i~~~~~~~~~~~Gv~V~lvdp~~~~~~m~lkkW~mg~~~~~YvL~  105 (114)
T PF03754_consen   27 TLFKTDVDPHQSRLSMPFNQIID-NDFLTEEEKRIIKEEKKNNDKKKGVEVILVDPSLRKWTMRLKKWNMGNGTSNYVLN  105 (114)
T ss_pred             eecccCCCCCCceeeccHHHhcc-cccCCHHHHHHHHHhhccCcccCCceEEEECCcCcEEEEEEEEecccCCceEEEEE
Confidence            48999998 56899999877643 23332               35789999999999999999999964 445679996


Q ss_pred             -CchhHhh
Q 008961           64 -GVTPCIQ   70 (547)
Q Consensus        64 -GWs~FVR   70 (547)
                       ||..+|.
T Consensus       106 ~gWn~VV~  113 (114)
T PF03754_consen  106 SGWNKVVE  113 (114)
T ss_pred             cChHhhcc
Confidence             9999886

>smart00249 PHD PHD zinc finger

Probab=80.20  E-value=1.8  Score=30.95  Aligned_cols=30  Identities=27%  Similarity=0.797  Sum_probs=22.2

Q ss_pred             CcCceEecCCccccccc-----CCC-CCCCCCcEee
Q 008961          228 EKIQWVQCEDCSKWRKV-----PAN-ARLPSKWTCS  257 (547)
Q Consensus       228 e~~~WVQCD~C~KWRrL-----P~~-~~lP~~W~Cs  257 (547)
                      ....||+||.|.+|--+     +.. ...+..|+|.
T Consensus        10 ~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~~C~   45 (47)
T smart00249       10 DGGELLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCP   45 (47)
T ss_pred             CCCCEEECCCCCchhhhhhCCCcccCCCCCCCEECc
Confidence            46789999999999743     333 3567788885

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	547
1wid_A	130	Solution Structure Of The B3 Dna-Binding Domain Of		1e-11
2l7p_A	100	Ashh2 A Cw Domain Length = 100		6e-05

>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 10/118 (8%)
Query: 2   LSASDAGRIGRLVLPKKCAEAYFP-PISQ--PEGLPLKVQDSKGKEWIFQFRFWPNNNSR 58
           ++ SD G++ RLV+PK  AE +FP P S    +G+ L  +D  GK W F++ +W  N+S+
Sbjct: 18  VTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQ 75
Query: 59  MYVL-EGVTPCIQNMQLQAGDIVTFSRLEPEG-KLVMGFRKASSASASDQDNEANKAG 114
            YVL +G +  ++   L+AGD+V+FSR   +  +L +G++   S S SD D     +G
Sbjct: 76  SYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWK---SRSGSDLDASGPSSG 130

>pdb|2L7P|A Chain A, Ashh2 A Cw Domain Length = 100

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 232 WVQCEDCSKWRKVPANA----RLPSKWTCSGNLWDPERSVCSVAQELREEQL-EDLIAPN 286
           WV+C+DC KWR++PA+        S+W C  N  D   + CS +QE+  E++ E+L    
Sbjct: 28  WVRCDDCFKWRRIPASVVGSIDESSRWICMNNS-DKRFADCSKSQEMSNEEINEELGIGQ 86
Query: 287 NPASSKKLKAAKQ 299
           + A +    AAK+
Sbjct: 87  DEADAYDCDAAKR 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	547
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	4e-23
2l7p_A	100	Histone-lysine N-methyltransferase ASHH2; CW-domai	3e-15
2e61_A	69	Zinc finger CW-type PWWP domain protein 1; ZF-CW d	5e-14

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130

 Score = 94.0 bits (233), Expect = 4e-23
 Identities = 38/108 (35%), Positives = 65/108 (60%), Gaps = 7/108 (6%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPIS---QPEGLPLKVQDSKGKEWIFQFRFWPNNNSR 58
           ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK W F++ +W  N+S+
Sbjct: 18  VTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQ 75

Query: 59  MYVL-EGVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASAS 104
            YVL +G +  ++   L+AGD+V+FSR    + +L +G++  S +   
Sbjct: 76  SYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLD 123

>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100

 Score = 70.6 bits (172), Expect = 3e-15
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 222 ATDNVGEKIQWVQCEDCSKWRKVPANAR----LPSKWTCSGNLWDPERSVCSVAQELREE 277
             D+   +  WV+C+DC KWR++PA+        S+W C  N  D   + CS +QE+  E
Sbjct: 18  IEDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNN-SDKRFADCSKSQEMSNE 76

Query: 278 QLEDLIAPNNPASSKKLKAAKQE 300
           ++ + +      +      A + 
Sbjct: 77  EINEELGIGQDEADAYDCDAAKR 99

>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69

 Score = 66.1 bits (161), Expect = 5e-14
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 223 TDNVGEKIQWVQCE--DCSKWRKVPAN---ARLPSKWTCSGNLWDPERSVCSVAQE 273
               G+ + WVQC   +C KWR++  N   + LP  W+C  N  D + + C + +E
Sbjct: 9   ISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQN-TDVQYNRCDIPEE 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	547
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	99.93
2l7p_A	100	Histone-lysine N-methyltransferase ASHH2; CW-domai	99.76
2e61_A	69	Zinc finger CW-type PWWP domain protein 1; ZF-CW d	99.69
4i1k_A	146	B3 domain-containing transcription factor VRN1; B3	99.51
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	99.3
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	94.58
1na6_A	404	Ecorii, restriction endonuclease ecorii; site-spec	90.68
1we9_A	64	PHD finger family protein; structural genomics, PH	86.42
1wee_A	72	PHD finger family protein; structural genomics, PH	85.19
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	83.29
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	82.31
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	82.03

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.93  E-value=4e-26  Score=204.21  Aligned_cols=106  Identities=37%  Similarity=0.724  Sum_probs=92.1

Q ss_pred             CCCcCcCCCCCcEEeehhhhhhcCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcceeec-CchhHhhhcCCCC
Q 008961            1 MLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE-GVTPCIQNMQLQA   76 (547)
Q Consensus         1 vLT~SDVg~lgRLVIPK~~AE~~FP~Ld~---~~G~~L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLt-GWs~FVRsK~Lqa   76 (547)
                      +||+|||++++||+||+.+|+.|||.++.   .+++.|.++|.+|+.|+|+|+||  +.+++|+|+ ||..||++|+|++
T Consensus        17 ~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt~GW~~FV~~~~L~~   94 (130)
T 1wid_A           17 AVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLRA   94 (130)
T ss_dssp             ECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEESSHHHHHHHTTCCT
T ss_pred             EEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEcCChHHHHHHcCCCC
Confidence            59999999889999999999999999974   57899999999999999999999  456778885 9999999999999


Q ss_pred             CCEEEEEEec-CCCeEEEEEEecCCCCCCccccc
Q 008961           77 GDIVTFSRLE-PEGKLVMGFRKASSASASDQDNE  109 (547)
Q Consensus        77 GDtVvF~R~e-~~GkL~IGvRRa~~~~~s~q~~~  109 (547)
                      ||+|+|++.+ ++++|+|++||+.... ++|.++
T Consensus        95 GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~~~  127 (130)
T 1wid_A           95 GDVVSFSRSNGQDQQLYIGWKSRSGSD-LDASGP  127 (130)
T ss_dssp             TCEEEEEECCSSSCCEEEEEECCCSCS-SCC---
T ss_pred             CCEEEEEEecCCCcEEEEEEEECCCCC-ccccCC
Confidence            9999999986 4578999999998755 455443

>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}

Probab=99.76  E-value=1.8e-19  Score=156.93  Aligned_cols=61  Identities=33%  Similarity=0.793  Sum_probs=56.0

Q ss_pred             CCCcCceEecCCcccccccCCCC----CCCCCcEeecCCCCCCCCCCCcccccChHHHHHHhCCCc
Q 008961          226 VGEKIQWVQCEDCSKWRKVPANA----RLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNN  287 (547)
Q Consensus       226 ~~e~~~WVQCD~C~KWRrLP~~~----~lP~~W~CsmN~WDp~~~sCsaPEE~~~~eld~ll~~~~  287 (547)
                      .....+|||||.|+|||+||..+    .+|++|||+||+ |+.+++|++|||++++||+.+|+.+.
T Consensus        22 ~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~-D~~~nsCs~PEE~~~~ei~~~l~~~~   86 (100)
T 2l7p_A           22 YSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNS-DKRFADCSKSQEMSNEEINEELGIGQ   86 (100)
T ss_dssp             CSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSS-CSSSCSTTSCCSSCHHHHHHHHTCCC
T ss_pred             CCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCC-CCCCCCCCCccCCCHHHHHHHhcccc
Confidence            34588999999999999999865    479999999998 99999999999999999999998876

>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*

Probab=99.69  E-value=4.7e-18  Score=139.14  Aligned_cols=51  Identities=35%  Similarity=0.906  Sum_probs=46.9

Q ss_pred             CCCcCceEecC--CcccccccCCCC---CCCCCcEeecCCCCCCCCCCCcccccChH
Q 008961          226 VGEKIQWVQCE--DCSKWRKVPANA---RLPSKWTCSGNLWDPERSVCSVAQELREE  277 (547)
Q Consensus       226 ~~e~~~WVQCD--~C~KWRrLP~~~---~lP~~W~CsmN~WDp~~~sCsaPEE~~~~  277 (547)
                      .++..+|||||  .|+|||+||..+   .+|++|||+||+ |+.+++|++|||.++.
T Consensus        12 ~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~-d~~~~~Cs~pEE~~~~   67 (69)
T 2e61_A           12 FGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNT-DVQYNRCDIPEETWTG   67 (69)
T ss_dssp             CCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCS-CGGGCSSSSCCCCCCC
T ss_pred             CCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCC-CCccCCCCCCcccCCC
Confidence            46789999999  999999999986   689999999999 9999999999999764

>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}

Probab=99.51  E-value=4.6e-14  Score=128.95  Aligned_cols=91  Identities=24%  Similarity=0.257  Sum_probs=77.4

Q ss_pred             CCCcCcCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeecCchhHhhhcCCCCCCEE
Q 008961            1 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIV   80 (547)
Q Consensus         1 vLT~SDVg~lgRLVIPK~~AE~~FP~Ld~~~G~~L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLtGWs~FVRsK~LqaGDtV   80 (547)
                      +|++|||.+..+|+||+.+++.|||..    ...|.++|. |+.|.|+|.|+.   +++++..||..||++++|++||+|
T Consensus        52 ~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~~---~~~~ls~GW~~Fv~dn~L~~GD~c  123 (146)
T 4i1k_A           52 VLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYKA---GRAKFSQGWYEFTLENNLGEGDVC  123 (146)
T ss_dssp             ECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEET---TEEEECTTHHHHHHHTTCCTTCEE
T ss_pred             EECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEeC---CcEEECCchHHHHHHcCCCCCCEE
Confidence            589999987678999999999999974    468889998 699999999982   366667799999999999999999


Q ss_pred             EEEEecCCC-eEEEEEEecC
Q 008961           81 TFSRLEPEG-KLVMGFRKAS   99 (547)
Q Consensus        81 vF~R~e~~G-kL~IGvRRa~   99 (547)
                      +|...+... .|.|.|-|+.
T Consensus       124 vFeli~~~~~~f~V~IfR~~  143 (146)
T 4i1k_A          124 VFELLRTRDFVLKVTAFRVN  143 (146)
T ss_dssp             EEEECSSSSCEEEEEEECCC
T ss_pred             EEEEecCCceEEEEEEEecc
Confidence            999986432 5888877764

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.30  E-value=5.5e-12  Score=107.98  Aligned_cols=87  Identities=13%  Similarity=0.284  Sum_probs=70.0

Q ss_pred             CCCcCcCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeecCchhHhhhcCCCCCCEE
Q 008961            1 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIV   80 (547)
Q Consensus         1 vLT~SDVg~lgRLVIPK~~AE~~FP~Ld~~~G~~L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLtGWs~FVRsK~LqaGDtV   80 (547)
                      +|+++|.  ..+|.||+..++.+.|.+    +..+.++|..|+.|.++|.++.   .+.|+..||..||++++|++||.|
T Consensus        14 ~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~---~~~~l~~GW~~Fv~~~~L~~GD~l   84 (104)
T 1yel_A           14 PFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG---EKVFLTVGWENFVKDNNLEDGKYL   84 (104)
T ss_dssp             ECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET---TEEEECTTHHHHHHHHTCCTTCEE
T ss_pred             EECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC---CcEEEccChHHHHHHcCCCCCCEE
Confidence            3667774  379999999998876553    4689999999999999999872   344566699999999999999999


Q ss_pred             EEEEecCCCeEEEEEEe
Q 008961           81 TFSRLEPEGKLVMGFRK   97 (547)
Q Consensus        81 vF~R~e~~GkL~IGvRR   97 (547)
                      +|.... +..+.|-|=+
T Consensus        85 vF~~~~-~~~f~V~If~  100 (104)
T 1yel_A           85 QFIYDR-DRTFYVIIYG  100 (104)
T ss_dssp             EEEECS-SSEEEEEEEC
T ss_pred             EEEEcC-CCeEEEEEEC
Confidence            998864 6677776543

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=94.58  E-value=0.004  Score=69.63  Aligned_cols=50  Identities=26%  Similarity=0.721  Sum_probs=39.4

Q ss_pred             CcCceEecC--CcccccccCCCC----CCCCCcEeecCCCCC-----CCCCCCcccccChHH
Q 008961          228 EKIQWVQCE--DCSKWRKVPANA----RLPSKWTCSGNLWDP-----ERSVCSVAQELREEQ  278 (547)
Q Consensus       228 e~~~WVQCD--~C~KWRrLP~~~----~lP~~W~CsmN~WDp-----~~~sCsaPEE~~~~e  278 (547)
                      .-+-||||-  .|+|||+||...    .++.+.+|.|-. +.     .--.|+.||++--.+
T Consensus        89 ~l~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~  149 (776)
T 4gut_A           89 QLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKP-NTAIKPETSDHCSLPEDLRVLE  149 (776)
T ss_dssp             TSCCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCC-C-------CCGGGSCCCHHHHH
T ss_pred             cCcHhhhcCcccccchhhCCCcCCCChhhhheeeccCcc-CcccccccCCCCCCCcccchhh
Confidence            458999999  999999999987    457899998864 22     356799999965555

>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A

Probab=90.68  E-value=0.29  Score=51.72  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=59.8

Q ss_pred             CCCcCcCCCC----CcEEeehhhhhhcCCCCCC----CCCceEEEE--eCCCCeEEEEEEEcCC-----CCCcceeecCc
Q 008961            1 MLSASDAGRI----GRLVLPKKCAEAYFPPISQ----PEGLPLKVQ--DSKGKEWIFQFRFWPN-----NNSRMYVLEGV   65 (547)
Q Consensus         1 vLT~SDVg~l----gRLVIPK~~AE~~FP~Ld~----~~G~~L~v~--D~~Gk~W~FR~~yw~N-----n~SR~YLLtGW   65 (547)
                      .|++.|++.+    ..|.+|+..+..+||.|..    .+.+.+.++  |...-.+.++++|+ |     ..+..|.|+.|
T Consensus        24 ~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twY-n~R~~~~tRnEyRLt~~  102 (404)
T 1na6_A           24 RLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYY-NSAHFGKTRNEKRITRW  102 (404)
T ss_dssp             ECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEE-CGGGTTSCCCEEEEECC
T ss_pred             EcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEe-cccccCCCCCceEEeec
Confidence            3888899854    4899999778999998872    222334432  33344559999999 4     13457999988


Q ss_pred             h-hHhhhcCCCCCCEEEEEEe
Q 008961           66 T-PCIQNMQLQAGDIVTFSRL   85 (547)
Q Consensus        66 s-~FVRsK~LqaGDtVvF~R~   85 (547)
                      . .|.=.....+||.++|-+.
T Consensus       103 ~~~~~~~~~a~~GDLlvia~~  123 (404)
T 1na6_A          103 GRGSPLQDPENTGALTLLAFK  123 (404)
T ss_dssp             CTTSGGGCGGGTTCEEEEEEE
T ss_pred             CCCCcccccCCCCCEEEEEEe
Confidence            5 5566688899999999865

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=86.42  E-value=0.34  Score=37.73  Aligned_cols=31  Identities=16%  Similarity=0.568  Sum_probs=21.0

Q ss_pred             CcCceEecCCcccccccCC-CC-----CCCCCcEeec
Q 008961          228 EKIQWVQCEDCSKWRKVPA-NA-----RLPSKWTCSG  258 (547)
Q Consensus       228 e~~~WVQCD~C~KWRrLP~-~~-----~lP~~W~Csm  258 (547)
                      ....|||||.|..|=-+.= ++     ..++.|+|..
T Consensus        18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~   54 (64)
T 1we9_A           18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS   54 (64)
T ss_dssp             SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred             CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence            3578999999999944321 11     2367898865

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=85.19  E-value=0.47  Score=38.02  Aligned_cols=30  Identities=30%  Similarity=0.752  Sum_probs=20.9

Q ss_pred             cCceEecCCcccccccCC---C--CCCCCCcEeec
Q 008961          229 KIQWVQCEDCSKWRKVPA---N--ARLPSKWTCSG  258 (547)
Q Consensus       229 ~~~WVQCD~C~KWRrLP~---~--~~lP~~W~Csm  258 (547)
                      ...|||||.|..|--+.=   .  ..+|+.|+|..
T Consensus        28 g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~   62 (72)
T 1wee_A           28 GERMLACDGCGVWHHTRCIGINNADALPSKFLCFR   62 (72)
T ss_dssp             SSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHH
T ss_pred             CCcEEECCCCCCccCCeeeccCccccCCCcEECCC
Confidence            347999999999954321   1  13578899854

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=83.29  E-value=0.75  Score=39.15  Aligned_cols=33  Identities=18%  Similarity=0.672  Sum_probs=24.2

Q ss_pred             CCcCceEecCCcccccccCC---C-CCCCCCcEeecC
Q 008961          227 GEKIQWVQCEDCSKWRKVPA---N-ARLPSKWTCSGN  259 (547)
Q Consensus       227 ~e~~~WVQCD~C~KWRrLP~---~-~~lP~~W~CsmN  259 (547)
                      .+...+||||.|..|--+.=   . ..+|+.|+|..-
T Consensus        37 ~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C   73 (98)
T 2lv9_A           37 HDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERC   73 (98)
T ss_dssp             SCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTT
T ss_pred             cCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCC
Confidence            34678999999999965431   1 257889999664

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=82.31  E-value=0.52  Score=38.12  Aligned_cols=31  Identities=16%  Similarity=0.443  Sum_probs=20.7

Q ss_pred             CcCceEecCCccccccc-----CC-CCCCCCCcEeec
Q 008961          228 EKIQWVQCEDCSKWRKV-----PA-NARLPSKWTCSG  258 (547)
Q Consensus       228 e~~~WVQCD~C~KWRrL-----P~-~~~lP~~W~Csm  258 (547)
                      ....|||||.|..|=-.     .. .+..++.|+|..
T Consensus        21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~   57 (75)
T 3kqi_A           21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPN   57 (75)
T ss_dssp             TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHH
T ss_pred             CCCCEEEcCCCCCCEecccccccccccCCCCEEECCC
Confidence            35789999999999432     22 123347888854

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=82.03  E-value=0.7  Score=37.12  Aligned_cols=30  Identities=17%  Similarity=0.700  Sum_probs=21.6

Q ss_pred             cCceEecCCcccccccCCC-C---CCCCCcEeec
Q 008961          229 KIQWVQCEDCSKWRKVPAN-A---RLPSKWTCSG  258 (547)
Q Consensus       229 ~~~WVQCD~C~KWRrLP~~-~---~lP~~W~Csm  258 (547)
                      ...+||||.|..|--+.=- +   .+|+.|+|..
T Consensus        30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~   63 (68)
T 3o70_A           30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQK   63 (68)
T ss_dssp             TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHH
T ss_pred             CCCEEECCCCCccccccccCcCcccCCCcEECCC
Confidence            5679999999999654321 1   4678999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	547
d1wida_	117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	9e-27
d1na6a1	175	b.142.1.1 (A:4-178) Restriction endonuclease EcoRI	6e-20
d1yela1	102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	1e-10

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  102 bits (256), Expect = 9e-27
 Identities = 34/105 (32%), Positives = 62/105 (59%), Gaps = 5/105 (4%)

Query: 2   LSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSR 58
           ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK W F++ +W ++ S 
Sbjct: 11  VTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSY 70

Query: 59  MYVLEGVTPCIQNMQLQAGDIVTFSRLEPE-GKLVMGFRKASSAS 102
           +   +G +  ++   L+AGD+V+FSR   +  +L +G++  S + 
Sbjct: 71  VL-TKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 114

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 85.0 bits (210), Expect = 6e-20
 Identities = 25/135 (18%), Positives = 39/135 (28%), Gaps = 20/135 (14%)

Query: 2   LSASDAGRIGR----LVLPKKCAEAYFPPISQPE------GLPLKVQDSKGKEWIFQFRF 51
           LSA+D G  G     L +P    E  FP I+          L   V      +   +  +
Sbjct: 22  LSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIY 81

Query: 52  WPN-------NNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAS-SASA 103
           + +       N  R+      +P         G +   +    E             AS 
Sbjct: 82  YNSAHFGKTRNEKRITRWGRGSPLQD--PENTGALTLLAFKLDEQGGDCKEVNIWVCAST 139

Query: 104 SDQDNEANKAGTGIP 118
            ++D      G  IP
Sbjct: 140 DEEDVIETAIGEVIP 154

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 11 GRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQ 70
            L +P    E +  P        + + D  G+ W  + +       ++++  G    ++
Sbjct: 20 KSLEIPLGFNEYFPAPFPIT----VDLLDYSGRSWTVRMK---KRGEKVFLTVGWENFVK 72

Query: 71 NMQLQAGDIVTFSRLEP 87
          +  L+ G  + F     
Sbjct: 73 DNNLEDGKYLQFIYDRD 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	547
d1wida_	117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.9
d1na6a1	175	Restriction endonuclease EcoRII, N-terminal domain	99.56
d1yela1	102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.29

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=2.8e-24  Score=185.13  Aligned_cols=101  Identities=33%  Similarity=0.682  Sum_probs=88.9

Q ss_pred             CCCcCcCCCCCcEEeehhhhhhcCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcceeecCchhHhhhcCCCCC
Q 008961            1 MLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAG   77 (547)
Q Consensus         1 vLT~SDVg~lgRLVIPK~~AE~~FP~Ld~---~~G~~L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLtGWs~FVRsK~LqaG   77 (547)
                      +||+|||++++||+||+.+|++|||+++.   .+++.|.+.|.+|+.|.|+|+||. +..++++..||..||++++|++|
T Consensus        10 ~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~-~~~~~~l~~GW~~Fv~~~~Lk~G   88 (117)
T d1wida_          10 AVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN-SSQSYVLTKGWSRFVKEKNLRAG   88 (117)
T ss_dssp             ECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEET-TTTEEEEESSHHHHHHHTTCCTT
T ss_pred             EecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEEC-CCCceEEecCHHHHHHHcCCCCC
Confidence            59999999889999999999999999874   468899999999999999999993 33444556799999999999999


Q ss_pred             CEEEEEEec-CCCeEEEEEEecCCCC
Q 008961           78 DIVTFSRLE-PEGKLVMGFRKASSAS  102 (547)
Q Consensus        78 DtVvF~R~e-~~GkL~IGvRRa~~~~  102 (547)
                      |+|+|++.+ .+++|+|++||+....
T Consensus        89 D~~~F~~~~~~~~~~~i~~r~~~~~~  114 (117)
T d1wida_          89 DVVSFSRSNGQDQQLYIGWKSRSGSD  114 (117)
T ss_dssp             CEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             CEEEEEEEeCCCCEEEEEEEECCCCC
Confidence            999999976 4679999999998654

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=6e-16  Score=143.41  Aligned_cols=96  Identities=18%  Similarity=0.164  Sum_probs=75.4

Q ss_pred             CCCcCcCCCCCc----EEeehhhhhhcCCCCCCC----CCceEE--EEeCCCCeEEEEEEEcCCCC-----Ccceeec-C
Q 008961            1 MLSASDAGRIGR----LVLPKKCAEAYFPPISQP----EGLPLK--VQDSKGKEWIFQFRFWPNNN-----SRMYVLE-G   64 (547)
Q Consensus         1 vLT~SDVg~lgR----LVIPK~~AE~~FP~Ld~~----~G~~L~--v~D~~Gk~W~FR~~yw~Nn~-----SR~YLLt-G   64 (547)
                      +||+|||+++||    |+|||++||.+||+|+..    +.+.|.  +.|.+|..|+|||+|| ||.     +..|+++ .
T Consensus        21 ~LtasD~g~tg~HQaG~~IPK~~ae~~FP~l~~~~e~nP~~~l~~~i~d~~g~~w~fR~iYy-n~~~~ggTRneyRiT~~   99 (175)
T d1na6a1          21 RLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYY-NSAHFGKTRNEKRITRW   99 (175)
T ss_dssp             ECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEE-CGGGTTSCCCEEEEECC
T ss_pred             EcccccccccCCccceeeecHHHHHHhCCCCCcccccCCCceEEEEEecCCCCeeEEEEEEE-CCccCCCccccEEEEec
Confidence            499999999997    999999999999999842    445565  5599999999999999 332     4789998 6


Q ss_pred             chhHhhhcCCCCCCEEEEEEecCC---CeEEEEEEe
Q 008961           65 VTPCIQNMQLQAGDIVTFSRLEPE---GKLVMGFRK   97 (547)
Q Consensus        65 Ws~FVRsK~LqaGDtVvF~R~e~~---GkL~IGvRR   97 (547)
                      |..|+..+.+.+||.++|.+..+.   -.++|.+-.
T Consensus       100 g~~~~~~~~~n~G~l~i~af~~~~~~~~~~~~~vwv  135 (175)
T d1na6a1         100 GRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWV  135 (175)
T ss_dssp             CTTSGGGCGGGTTCEEEEEEECCTTSCCCCEEEEEE
T ss_pred             cccccccCccccccEEEEEeecCCCCCceeEEEEEE
Confidence            679999999999999999996322   234555443

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.29  E-value=3.4e-12  Score=107.78  Aligned_cols=85  Identities=13%  Similarity=0.318  Sum_probs=70.5

Q ss_pred             CCCcCcCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeecCchhHhhhcCCCCCCEE
Q 008961            1 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIV   80 (547)
Q Consensus         1 vLT~SDVg~lgRLVIPK~~AE~~FP~Ld~~~G~~L~v~D~~Gk~W~FR~~yw~Nn~SR~YLLtGWs~FVRsK~LqaGDtV   80 (547)
                      +|.++++.  .+|.||+..+..+.+.+    ...+.++|..|+.|.+++...   +..+|+..||..||++++|++||.|
T Consensus        12 v~~~~~~~--~~L~IP~~F~~~~~~~~----~~~i~L~d~~G~~W~v~~~~~---~~~~~~~~GW~~Fv~~n~L~~GD~~   82 (102)
T d1yela1          12 PFISEKSS--KSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKR---GEKVFLTVGWENFVKDNNLEDGKYL   82 (102)
T ss_dssp             ECCHHHHT--TCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEE---TTEEEECTTHHHHHHHHTCCTTCEE
T ss_pred             EEcCcccC--CCEECCHHHHHhCCCCC----CCEEEEEcCCCCEEEEEEEEe---CCeEEEccCHHHHHHHcCCCcCCEE
Confidence            35666765  58999999998877664    468999999999999998765   4567888899999999999999999


Q ss_pred             EEEEecCCCeEEEEE
Q 008961           81 TFSRLEPEGKLVMGF   95 (547)
Q Consensus        81 vF~R~e~~GkL~IGv   95 (547)
                      +|.... +..+.|.+
T Consensus        83 vF~~~~-~~~f~V~I   96 (102)
T d1yela1          83 QFIYDR-DRTFYVII   96 (102)
T ss_dssp             EEEECS-SSEEEEEE
T ss_pred             EEEEcC-CcEEEEEE
Confidence            998864 77777765