Citrus Sinensis ID: 008975

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
MILNLVCFKLNVIDIIVVVVLANVLTFIIETVAGKMTEPKPNTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINSAKEKNPWMDEIHHFPVDVPKVSTI
ccccEEEEEccccEEEHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEECccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccHHHHHccccccEEEEEEcccccccccccEEEEEEEECccccccccccccEEEcccccEEEEEcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccHHHHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHHccccccccEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccc
MILNLVCFKLNVIDIIVVVVLANVLTFIIETVAG**********************DFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINSAKEKNPWMDEIHHFPVDVPKV*T*
xxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MILNLVCFKLNVIDIIVVVVLANVLTFIIETVAGKMTEPKPNTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINSAKEKNPWMDEIHHFPVDVPKVSTI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
3-ketoacyl-CoA synthase 11 Active on both saturated and mono-unsaturated acyl chains C16 to C20.confidentO48780
3-ketoacyl-CoA synthase 17 Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26).probableQ5XEP9
3-ketoacyl-CoA synthase 19 Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26).probableQ9FG87

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
2.-.-.-Transferases.probable
2.3.-.-Acyltransferases.probable
2.3.1.-Transferring groups other than amino-acyl groups.probable
2.3.1.119Icosanoyl-CoA synthase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1U0M, chain A
Confidence level:very confident
Coverage over the Query: 138-389,412-520
View the alignment between query and template
View the model in PyMOL
Template: 2H84, chain A
Confidence level:very confident
Coverage over the Query: 136-392,415-519
View the alignment between query and template
View the model in PyMOL
Template: 1TEE, chain A
Confidence level:probable
Coverage over the Query: 230-333,362-519
View the alignment between query and template
View the model in PyMOL