Citrus Sinensis ID: 008975

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
MILNLVCFKLNVIDIIVVVVLANVLTFIIETVAGKMTEPKPNTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINSAKEKNPWMDEIHHFPVDVPKVSTI
ccccEEEEEccccEEEHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccHHHHHccccccEEEEEEcccccccccccEEEEEEEEEccccccccccccEEEcccccEEEEEcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHccccccccEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccc
ccEEEEHEEHcHHHHEHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEHHHHHHccccccccccEEEEEEcccccEEEEccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHccccHHcccHcHccHHHHcEcHHHHHHHHHHHHHHccccccccEEEEEEEEcccEEEEEEHHHHccccccccccccHHHHcccccccccEccc
MILNLVCFKLNVIDIIVVVVLANVLTFIIETVagkmtepkpntplipptspsrnlpdfkksvKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYfltrprpvylvdfscykpeesrkctkrifmdqsrmtgtftEENLQFQKKILErsglgdstylpeavlnippnpsmkEARKEAEAVMFGAIDELfaktsvkpkdiGILIVncslfnptpslSAMVINHYKLRGniisynlggmgcsaGLISIDLANnllqvhpnSYALVISMENItlnwyfgndrskLVSNCLFRMGGAAILLSnrfsdrrrskyRLVHTVrthkgaddncfacvtqeedsegkvgVTLSKNLMAVAGDALKtnittlgplvlpmsEQLLFFATLVGKKLFKMkikpyipdfKLAFEHFCIHAGGRAVLDELEKNlqlsdwhmepsrmtlyrfgntsssSLWYELAYSEAKGrikkgdrtwqiafgsgfkCNSAVWKALRSINSakeknpwmdeihhfpvdvpkvsti
MILNLVCFKLNVIDIIVVVVLANVLTFIIETvagkmtepkpntplipptspsrnlpdfKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDfscykpeesrkctkrifmdqsrmtgtfteeNLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAIllsnrfsdrrrskYRLVHtvrthkgaddncfACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINSAkeknpwmdeihhfpvdvpkvsti
MILNLVCFKlnvidiivvvvlanvlTFIIETVAGKMTEPKPNTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICStllvflltlyfltRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINSAKEKNPWMDEIHHFPVDVPKVSTI
*ILNLVCFKLNVIDIIVVVVLANVLTFIIETVAG*************************KSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPE****C***I*******************************************************AVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINSAKEKNPWMDEIHHFPV********
MILNLVCFKLNVIDIIVVVVLANVLTFII***************************DFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAK***KKGDRTWQIAFGSGFKCNSAVWKALRSINS**EKNPWMDEIHHFPVDVPKV*T*
MILNLVCFKLNVIDIIVVVVLANVLTFIIETVAGKMTEPKPNTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINSAKEKNPWMDEIHHFPVDVPKVSTI
MILNLVCFKLNVIDIIVVVVLANVLTFIIETVAGK*****************RNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINSAKEKNPWMDEIHHFPVDVPKVST*
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MILNLVCFKLNVIDIIVVVVLANVLTFIIETVAGKMTEPKPNTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINSAKEKNPWMDEIHHFPVDVPKVSTI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query547 2.2.26 [Sep-21-2011]
O48780509 3-ketoacyl-CoA synthase 1 yes no 0.917 0.986 0.855 0.0
Q5XEP9528 3-ketoacyl-CoA synthase 1 no no 0.904 0.937 0.720 0.0
Q9FG87529 3-ketoacyl-CoA synthase 1 no no 0.890 0.920 0.736 0.0
Q9LN49516 3-ketoacyl-CoA synthase 4 no no 0.890 0.943 0.684 0.0
Q9SIX1512 3-ketoacyl-CoA synthase 9 no no 0.892 0.953 0.660 0.0
Q9MAM3528 3-ketoacyl-CoA synthase 1 no no 0.893 0.926 0.646 0.0
Q9XF43497 3-ketoacyl-CoA synthase 6 no no 0.901 0.991 0.613 0.0
O65677487 Probable 3-ketoacyl-CoA s no no 0.859 0.965 0.618 1e-180
Q9C6L5492 3-ketoacyl-CoA synthase 5 no no 0.893 0.993 0.604 1e-177
Q570B4550 3-ketoacyl-CoA synthase 1 no no 0.882 0.878 0.560 1e-172
>sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1 Back     alignment and function desciption
 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/504 (85%), Positives = 472/504 (93%), Gaps = 2/504 (0%)

Query: 44  PLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLY 103
           PLI   S  RNLPDFKKSVKLKYVKLGYHYLITHGM+LFLSPLV+++AAQ+STFS  DL 
Sbjct: 8   PLI--ESSDRNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFSVTDLR 65

Query: 104 DLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCTKRIFMDQS 163
            LWEHLQYNLISV++CS LLVFL+T+YF+TRPRPVYLV+FSC+KP+ESRKCTK+IFMD+S
Sbjct: 66  SLWEHLQYNLISVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFKPDESRKCTKKIFMDRS 125

Query: 164 RMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDEL 223
           ++TG+FTEENL+FQ+KIL+RSGLG+STYLPEAVLN+PPNP MKEARKEAE VMFGAIDEL
Sbjct: 126 KLTGSFTEENLEFQRKILQRSGLGESTYLPEAVLNVPPNPCMKEARKEAETVMFGAIDEL 185

Query: 224 FAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDL 283
            AKT+V PKDIGILIVNCSLFNPTPSLSAMV+NHYKLRGNI+SYNLGGMGCSAGLISIDL
Sbjct: 186 LAKTNVNPKDIGILIVNCSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDL 245

Query: 284 ANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSK 343
           A +LL   PN+YA+VISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSN+  DRRRSK
Sbjct: 246 AKHLLHSIPNTYAMVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNKRWDRRRSK 305

Query: 344 YRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLP 403
           Y LV TVRTHKGADD CF C+TQEEDS  K+GVTLSK LMAVAGDALKTNITTLGPLVLP
Sbjct: 306 YELVDTVRTHKGADDKCFGCITQEEDSASKIGVTLSKELMAVAGDALKTNITTLGPLVLP 365

Query: 404 MSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHME 463
            SEQLLFFATLVG+KLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL+L++WHME
Sbjct: 366 TSEQLLFFATLVGRKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLKLTEWHME 425

Query: 464 PSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINS 523
           PSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDR WQIAFGSGFKCNS+VW+A+RS+N 
Sbjct: 426 PSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRIWQIAFGSGFKCNSSVWRAVRSVNP 485

Query: 524 AKEKNPWMDEIHHFPVDVPKVSTI 547
            KEKNPWMDEIH FPV+VPKVSTI
Sbjct: 486 KKEKNPWMDEIHEFPVEVPKVSTI 509
Active on both saturated and mono-unsaturated acyl chains C16 to C20.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 1EC: 9
>sp|Q5XEP9|KCS17_ARATH 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2 Back     alignment and function description
>sp|Q9FG87|KCS19_ARATH 3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1 Back     alignment and function description
>sp|Q9LN49|KCS4_ARATH 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIX1|KCS9_ARATH 3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1 Back     alignment and function description
>sp|Q9MAM3|KCS1_ARATH 3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XF43|KCS6_ARATH 3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=1 SV=1 Back     alignment and function description
>sp|O65677|KCS2_ARATH Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6L5|KCS5_ARATH 3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=1 SV=1 Back     alignment and function description
>sp|Q570B4|KCS10_ARATH 3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
267631202511 fatty acid elongase [Pistacia chinensis] 0.930 0.996 0.917 0.0
449527103513 PREDICTED: 3-ketoacyl-CoA synthase 11-li 0.936 0.998 0.902 0.0
225445394511 PREDICTED: 3-ketoacyl-CoA synthase 11 [V 0.934 1.0 0.882 0.0
356511628510 PREDICTED: 3-ketoacyl-CoA synthase 11-li 0.932 1.0 0.888 0.0
449457111513 PREDICTED: 3-ketoacyl-CoA synthase 11-li 0.936 0.998 0.902 0.0
225430155511 PREDICTED: 3-ketoacyl-CoA synthase 11 [V 0.934 1.0 0.871 0.0
356563067510 PREDICTED: 3-ketoacyl-CoA synthase 11-li 0.932 1.0 0.880 0.0
164564732510 CM0216.300.nc [Lotus japonicus] 0.932 1.0 0.869 0.0
356508342510 PREDICTED: 3-ketoacyl-CoA synthase 11-li 0.932 1.0 0.867 0.0
357477873500 Beta-ketoacyl-coa synthase family protei 0.912 0.998 0.883 0.0
>gi|267631202|gb|ACY78677.1| fatty acid elongase [Pistacia chinensis] Back     alignment and taxonomy information
 Score =  982 bits (2539), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/510 (91%), Positives = 492/510 (96%), Gaps = 1/510 (0%)

Query: 36  MTEPKPNTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLS 95
           M+EP  NTPL PP+S +R LPDFKKS+KLKYVKLGYHYLITHGM+LFLSPLVV++AAQ+S
Sbjct: 1   MSEPNLNTPLNPPSS-TRKLPDFKKSIKLKYVKLGYHYLITHGMYLFLSPLVVLIAAQVS 59

Query: 96  TFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCT 155
           TFS QD YDLWEHLQYNLI VIICSTLLVFL TLYFLTRPRPVYLV+FSCYKPEESRKCT
Sbjct: 60  TFSLQDPYDLWEHLQYNLIFVIICSTLLVFLSTLYFLTRPRPVYLVNFSCYKPEESRKCT 119

Query: 156 KRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAV 215
           K+IFMDQSRMTGTFTEENL FQ KILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAV
Sbjct: 120 KKIFMDQSRMTGTFTEENLLFQHKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAV 179

Query: 216 MFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCS 275
           MFGAIDELFAK SVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNI+SYNLGGMGCS
Sbjct: 180 MFGAIDELFAKASVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIVSYNLGGMGCS 239

Query: 276 AGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNR 335
           AGLISIDLA NLLQVHPNSYALVISMENITLNWYFGNDRSKLVSN LFR+GGAAILLSNR
Sbjct: 240 AGLISIDLAKNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNFLFRVGGAAILLSNR 299

Query: 336 FSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNIT 395
           +SDRRRSKYRLVHTVRTHKGADD CFACVTQEEDSEGK+GV+LS++LMAVAGDALKTNIT
Sbjct: 300 YSDRRRSKYRLVHTVRTHKGADDKCFACVTQEEDSEGKIGVSLSRDLMAVAGDALKTNIT 359

Query: 396 TLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL 455
           TLGPLVLPMSEQLLF ATLVGKKLFKMK+KPYIPDFKLAFEH CIHAGGRAVLDELEKNL
Sbjct: 360 TLGPLVLPMSEQLLFLATLVGKKLFKMKVKPYIPDFKLAFEHLCIHAGGRAVLDELEKNL 419

Query: 456 QLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVW 515
           QLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRI+KGDRTWQIAFGSGFKCNSAVW
Sbjct: 420 QLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIRKGDRTWQIAFGSGFKCNSAVW 479

Query: 516 KALRSINSAKEKNPWMDEIHHFPVDVPKVS 545
           KALR+IN AKEK+PWMDEIH+FPV+VP+VS
Sbjct: 480 KALRTINPAKEKSPWMDEIHNFPVEVPRVS 509

Source: Pistacia chinensis

Species: Pistacia chinensis

Genus: Pistacia

Family: Anacardiaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449527103|ref|XP_004170552.1| PREDICTED: 3-ketoacyl-CoA synthase 11-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225445394|ref|XP_002284986.1| PREDICTED: 3-ketoacyl-CoA synthase 11 [Vitis vinifera] gi|147838768|emb|CAN67313.1| hypothetical protein VITISV_014119 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511628|ref|XP_003524525.1| PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max] Back     alignment and taxonomy information
>gi|449457111|ref|XP_004146292.1| PREDICTED: 3-ketoacyl-CoA synthase 11-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225430155|ref|XP_002284751.1| PREDICTED: 3-ketoacyl-CoA synthase 11 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563067|ref|XP_003549787.1| PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max] Back     alignment and taxonomy information
>gi|164564732|dbj|BAF98214.1| CM0216.300.nc [Lotus japonicus] Back     alignment and taxonomy information
>gi|356508342|ref|XP_003522916.1| PREDICTED: 3-ketoacyl-CoA synthase 11-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|357477873|ref|XP_003609222.1| Beta-ketoacyl-coa synthase family protein [Medicago truncatula] gi|355510277|gb|AES91419.1| Beta-ketoacyl-coa synthase family protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
TAIR|locus:2043849509 KCS11 "3-ketoacyl-CoA synthase 0.917 0.986 0.837 2.8e-233
TAIR|locus:2170837529 KCS20 "3-ketoacyl-CoA synthase 0.914 0.945 0.714 6.8e-198
TAIR|locus:2020215528 KCS2 "3-ketoacyl-CoA synthase 0.904 0.937 0.702 1.9e-193
TAIR|locus:2016397516 KCS4 "3-ketoacyl-CoA synthase 0.890 0.943 0.670 2.7e-180
TAIR|locus:2042684512 KCS9 "3-ketoacyl-CoA synthase 0.888 0.949 0.655 1.7e-176
TAIR|locus:2200955528 KCS1 "3-ketoacyl-CoA synthase 0.893 0.926 0.634 1e-171
TAIR|locus:2201262497 KCS6 "3-ketoacyl-CoA synthase 0.901 0.991 0.605 1e-162
TAIR|locus:2139579487 KCS17 "3-ketoacyl-CoA synthase 0.859 0.965 0.612 5.9e-160
TAIR|locus:2031260492 KCS5 "3-ketoacyl-CoA synthase 0.893 0.993 0.593 4.9e-156
TAIR|locus:2057706550 KCS10 "3-ketoacyl-CoA synthase 0.674 0.670 0.56 3e-155
TAIR|locus:2043849 KCS11 "3-ketoacyl-CoA synthase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2250 (797.1 bits), Expect = 2.8e-233, P = 2.8e-233
 Identities = 422/504 (83%), Positives = 460/504 (91%)

Query:    44 PLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLY 103
             PLI   S  RNLPDFKKSVKLKYVKLGYHYLITHGM+LFLSPLV+++AAQ+STFS  DL 
Sbjct:     8 PLIE--SSDRNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFSVTDLR 65

Query:   104 DLWEHLQYNLISVIICSXXXXXXXXXXXXXRPRPVYLVDFSCYKPEESRKCTKRIFMDQS 163
              LWEHLQYNLISV++CS             RPRPVYLV+FSC+KP+ESRKCTK+IFMD+S
Sbjct:    66 SLWEHLQYNLISVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFKPDESRKCTKKIFMDRS 125

Query:   164 RMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDEL 223
             ++TG+FTEENL+FQ+KIL+RSGLG+STYLPEAVLN+PPNP MKEARKEAE VMFGAIDEL
Sbjct:   126 KLTGSFTEENLEFQRKILQRSGLGESTYLPEAVLNVPPNPCMKEARKEAETVMFGAIDEL 185

Query:   224 FAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDL 283
              AKT+V PKDIGILIVNCSLFNPTPSLSAMV+NHYKLRGNI+SYNLGGMGCSAGLISIDL
Sbjct:   186 LAKTNVNPKDIGILIVNCSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDL 245

Query:   284 ANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSK 343
             A +LL   PN+YA+VISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSN+  DRRRSK
Sbjct:   246 AKHLLHSIPNTYAMVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNKRWDRRRSK 305

Query:   344 YRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLP 403
             Y LV TVRTHKGADD CF C+TQEEDS  K+GVTLSK LMAVAGDALKTNITTLGPLVLP
Sbjct:   306 YELVDTVRTHKGADDKCFGCITQEEDSASKIGVTLSKELMAVAGDALKTNITTLGPLVLP 365

Query:   404 MSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHME 463
              SEQLLFFATLVG+KLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL+L++WHME
Sbjct:   366 TSEQLLFFATLVGRKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLKLTEWHME 425

Query:   464 PSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRSINS 523
             PSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDR WQIAFGSGFKCNS+VW+A+RS+N 
Sbjct:   426 PSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRIWQIAFGSGFKCNSSVWRAVRSVNP 485

Query:   524 AKEKNPWMDEIHHFPVDVPKVSTI 547
              KEKNPWMDEIH FPV+VPKVSTI
Sbjct:   486 KKEKNPWMDEIHEFPVEVPKVSTI 509
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006633 "fatty acid biosynthetic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0008610 "lipid biosynthetic process" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA
GO:0009409 "response to cold" evidence=IEP
GO:0009416 "response to light stimulus" evidence=IEP
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0030243 "cellulose metabolic process" evidence=RCA
TAIR|locus:2170837 KCS20 "3-ketoacyl-CoA synthase 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020215 KCS2 "3-ketoacyl-CoA synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016397 KCS4 "3-ketoacyl-CoA synthase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042684 KCS9 "3-ketoacyl-CoA synthase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200955 KCS1 "3-ketoacyl-CoA synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201262 KCS6 "3-ketoacyl-CoA synthase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139579 KCS17 "3-ketoacyl-CoA synthase 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031260 KCS5 "3-ketoacyl-CoA synthase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057706 KCS10 "3-ketoacyl-CoA synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XEP9KCS17_ARATH2, ., 3, ., 1, ., -0.72020.90490.9375nono
Q9FG87KCS19_ARATH2, ., 3, ., 1, ., -0.73630.89030.9206nono
O48780KCS11_ARATH2, ., 3, ., 1, ., 1, 1, 90.85510.91770.9862yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.983
3rd Layer2.3.1.1190.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
PLN02192511 PLN02192, PLN02192, 3-ketoacyl-CoA synthase 0.0
PLN02854521 PLN02854, PLN02854, 3-ketoacyl-CoA synthase 0.0
PLN02377502 PLN02377, PLN02377, 3-ketoacyl-CoA synthase 0.0
PLN02932478 PLN02932, PLN02932, 3-ketoacyl-CoA synthase 0.0
pfam08392290 pfam08392, FAE1_CUT1_RppA, FAE1/Type III polyketid 0.0
PLN00415466 PLN00415, PLN00415, 3-ketoacyl-CoA synthase 0.0
cd00831361 cd00831, CHS_like, Chalcone and stilbene synthases 1e-147
COG3424356 COG3424, BcsA, Predicted naringenin-chalcone synth 3e-25
COG0332323 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein] 1e-13
cd00827324 cd00827, init_cond_enzymes, "initiating" condensin 4e-12
TIGR00747318 TIGR00747, fabH, 3-oxoacyl-(acyl-carrier-protein) 2e-10
pfam0854190 pfam08541, ACP_syn_III_C, 3-Oxoacyl-[acyl-carrier- 5e-09
PRK12879325 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protei 2e-08
PLN03169391 PLN03169, PLN03169, chalcone synthase family prote 2e-07
cd00830320 cd00830, KAS_III, Ketoacyl-acyl carrier protein sy 9e-07
cd00830320 cd00830, KAS_III, Ketoacyl-acyl carrier protein sy 3e-06
pfam02797151 pfam02797, Chal_sti_synt_C, Chalcone and stilbene 3e-06
PLN03170401 PLN03170, PLN03170, chalcone synthase; Provisional 2e-05
PLN03171399 PLN03171, PLN03171, chalcone synthase-like protein 3e-05
PLN03168389 PLN03168, PLN03168, chalcone synthase; Provisional 6e-05
PLN03172393 PLN03172, PLN03172, chalcone synthase family prote 8e-05
PRK09352319 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protei 8e-05
PLN03173391 PLN03173, PLN03173, chalcone synthase; Provisional 0.001
PLN02326379 PLN02326, PLN02326, 3-oxoacyl-[acyl-carrier-protei 0.002
>gnl|CDD|215123 PLN02192, PLN02192, 3-ketoacyl-CoA synthase Back     alignment and domain information 
 Score = 1046 bits (2706), Expect = 0.0
 Identities = 460/512 (89%), Positives = 491/512 (95%), Gaps = 1/512 (0%)

Query: 36  MTEPKPNTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLS 95
           M+E    TPLI P S SR LPDFKKSVKLKYVKLGYHYLITHGM+LFLSPLVV++AAQLS
Sbjct: 1   MSEVNQKTPLIEP-SSSRKLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVVVIAAQLS 59

Query: 96  TFSFQDLYDLWEHLQYNLISVIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCT 155
           TFS QDL+DLWEHL++NLISVI+CSTLLVFL TLYFLTRPRPVYLVDFSCYKP++SRKCT
Sbjct: 60  TFSIQDLHDLWEHLKFNLISVILCSTLLVFLSTLYFLTRPRPVYLVDFSCYKPDDSRKCT 119

Query: 156 KRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAEAV 215
           ++IFMD+S++TG+FTEENL+FQ+KILERSGLG+STYLPEAVLN+PPNP M EARKEAE V
Sbjct: 120 RKIFMDRSKLTGSFTEENLEFQRKILERSGLGESTYLPEAVLNVPPNPCMAEARKEAETV 179

Query: 216 MFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCS 275
           MFGAID+L AKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNI+SYNLGGMGCS
Sbjct: 180 MFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNILSYNLGGMGCS 239

Query: 276 AGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNR 335
           AGLISIDLA +LLQVHPNSYALVISMENITLNWYFGNDRS LVSNCLFRMGGAAILLSN+
Sbjct: 240 AGLISIDLAKHLLQVHPNSYALVISMENITLNWYFGNDRSMLVSNCLFRMGGAAILLSNK 299

Query: 336 FSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNIT 395
            SDRRRSKY+LVHTVRTHKGADD CFACVTQEEDS GK+GV+LSK+LMAVAGDALKTNIT
Sbjct: 300 RSDRRRSKYQLVHTVRTHKGADDKCFACVTQEEDSAGKIGVSLSKDLMAVAGDALKTNIT 359

Query: 396 TLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL 455
           TLGPLVLPMSEQLLFFATLVGKKLFKMK+KPYIPDFKLAFEHFCIHAGGRAVLDELEKNL
Sbjct: 360 TLGPLVLPMSEQLLFFATLVGKKLFKMKLKPYIPDFKLAFEHFCIHAGGRAVLDELEKNL 419

Query: 456 QLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVW 515
           QLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVW
Sbjct: 420 QLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVW 479

Query: 516 KALRSINSAKEKNPWMDEIHHFPVDVPKVSTI 547
           KALR++N AKEKNPWMDEIH FPVDVPKVSTI
Sbjct: 480 KALRTVNPAKEKNPWMDEIHEFPVDVPKVSTI 511

Length = 511
>gnl|CDD|215459 PLN02854, PLN02854, 3-ketoacyl-CoA synthase Back     alignment and domain information
>gnl|CDD|166018 PLN02377, PLN02377, 3-ketoacyl-CoA synthase Back     alignment and domain information
>gnl|CDD|178520 PLN02932, PLN02932, 3-ketoacyl-CoA synthase Back     alignment and domain information
>gnl|CDD|116972 pfam08392, FAE1_CUT1_RppA, FAE1/Type III polyketide synthase-like protein Back     alignment and domain information
>gnl|CDD|177808 PLN00415, PLN00415, 3-ketoacyl-CoA synthase Back     alignment and domain information
>gnl|CDD|238427 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs Back     alignment and domain information
>gnl|CDD|225958 COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein] Back     alignment and domain information
>gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes Back     alignment and domain information
>gnl|CDD|233113 TIGR00747, fabH, 3-oxoacyl-(acyl-carrier-protein) synthase III Back     alignment and domain information
>gnl|CDD|117118 pfam08541, ACP_syn_III_C, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Back     alignment and domain information
>gnl|CDD|237245 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>gnl|CDD|215612 PLN03169, PLN03169, chalcone synthase family protein; Provisional Back     alignment and domain information
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems Back     alignment and domain information
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems Back     alignment and domain information
>gnl|CDD|111670 pfam02797, Chal_sti_synt_C, Chalcone and stilbene synthases, C-terminal domain Back     alignment and domain information
>gnl|CDD|178714 PLN03170, PLN03170, chalcone synthase; Provisional Back     alignment and domain information
>gnl|CDD|178715 PLN03171, PLN03171, chalcone synthase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|178712 PLN03168, PLN03168, chalcone synthase; Provisional Back     alignment and domain information
>gnl|CDD|178716 PLN03172, PLN03172, chalcone synthase family protein; Provisional Back     alignment and domain information
>gnl|CDD|236475 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>gnl|CDD|178717 PLN03173, PLN03173, chalcone synthase; Provisional Back     alignment and domain information
>gnl|CDD|215185 PLN02326, PLN02326, 3-oxoacyl-[acyl-carrier-protein] synthase III Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 547
PLN02192511 3-ketoacyl-CoA synthase 100.0
PLN02854521 3-ketoacyl-CoA synthase 100.0
PLN02377502 3-ketoacyl-CoA synthase 100.0
PLN02932478 3-ketoacyl-CoA synthase 100.0
PLN00415466 3-ketoacyl-CoA synthase 100.0
PF08392290 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- 100.0
COG0332323 FabH 3-oxoacyl-[acyl-carrier-protein] 100.0
PLN03172393 chalcone synthase family protein; Provisional 100.0
cd00831361 CHS_like Chalcone and stilbene synthases; plant-sp 100.0
PLN03168389 chalcone synthase; Provisional 100.0
PLN03169391 chalcone synthase family protein; Provisional 100.0
PLN03173391 chalcone synthase; Provisional 100.0
PLN03170401 chalcone synthase; Provisional 100.0
PLN03171399 chalcone synthase-like protein; Provisional 100.0
PRK05963326 3-oxoacyl-(acyl carrier protein) synthase II; Revi 100.0
COG3424356 BcsA Predicted naringenin-chalcone synthase [Secon 100.0
PRK12880353 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
PLN02326379 3-oxoacyl-[acyl-carrier-protein] synthase III 100.0
CHL00203326 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr 100.0
PRK12879325 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
PRK07204329 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
PRK09258338 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
PRK06840339 hypothetical protein; Validated 100.0
cd00830320 KAS_III Ketoacyl-acyl carrier protein synthase III 100.0
TIGR00747318 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III 100.0
PRK09352319 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
PRK04262347 hypothetical protein; Provisional 100.0
PRK06816378 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
TIGR00748345 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase 100.0
PRK07515372 3-oxoacyl-(acyl carrier protein) synthase III; Rev 100.0
cd00827324 init_cond_enzymes "initiating" condensing enzymes 100.0
TIGR01835379 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt 100.0
PLN02577459 hydroxymethylglutaryl-CoA synthase 100.0
PF00195226 Chal_sti_synt_N: Chalcone and stilbene synthases, 99.97
COG3425377 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi 99.97
TIGR01833454 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth 99.97
cd00327254 cond_enzymes Condensing enzymes; Family of enzymes 99.95
cd00825332 decarbox_cond_enzymes decarboxylating condensing e 99.92
PF01154174 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s 99.78
PF02797151 Chal_sti_synt_C: Chalcone and stilbene synthases, 99.78
PF0854190 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC 99.78
KOG1393462 consensus Hydroxymethylglutaryl-CoA synthase [Lipi 99.69
PRK06147348 3-oxoacyl-(acyl carrier protein) synthase; Validat 99.64
TIGR02845327 spore_V_AD stage V sporulation protein AD. Bacillu 99.6
PRK08304337 stage V sporulation protein AD; Validated 99.53
cd00834406 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) 99.49
cd00751386 thiolase Thiolase are ubiquitous enzymes that cata 99.45
smart00825424 PKS_KS Beta-ketoacyl synthase. The structure of be 99.4
PF0854580 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) 99.37
PRK09051394 beta-ketothiolase; Provisional 99.36
PRK05656393 acetyl-CoA acetyltransferase; Provisional 99.35
TIGR01930386 AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi 99.35
PRK06064389 acetyl-CoA acetyltransferase; Provisional 99.34
cd00829375 SCP-x_thiolase Thiolase domain associated with ste 99.31
PRK08313386 acetyl-CoA acetyltransferase; Provisional 99.31
PRK09052399 acetyl-CoA acetyltransferase; Provisional 99.3
PRK12578385 acetyl-CoA acetyltransferase; Provisional 99.28
cd00828407 elong_cond_enzymes "elongating" condensing enzymes 99.27
PRK06501425 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.25
TIGR03150407 fabF beta-ketoacyl-acyl-carrier-protein synthase I 99.24
cd00833421 PKS polyketide synthases (PKSs) polymerize simple 99.23
PRK05790393 putative acyltransferase; Provisional 99.2
PRK06025417 acetyl-CoA acetyltransferase; Provisional 99.18
PRK06445394 acetyl-CoA acetyltransferase; Provisional 99.17
PRK07314411 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.16
PRK12404334 stage V sporulation protein AD; Provisional 99.13
PRK07661391 acetyl-CoA acetyltransferase; Provisional 99.12
PRK06158384 thiolase; Provisional 99.09
PRK07103410 polyketide beta-ketoacyl:acyl carrier protein synt 99.09
PRK06333424 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.08
PRK06690361 acetyl-CoA acetyltransferase; Provisional 99.07
PRK08256391 lipid-transfer protein; Provisional 99.05
PRK08722414 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.05
PRK08439406 3-oxoacyl-(acyl carrier protein) synthase II; Revi 99.04
PRK07108392 acetyl-CoA acetyltransferase; Provisional 99.02
PLN02644394 acetyl-CoA C-acetyltransferase 99.01
PRK06205404 acetyl-CoA acetyltransferase; Provisional 99.0
PRK08235393 acetyl-CoA acetyltransferase; Provisional 98.99
PRK08242402 acetyl-CoA acetyltransferase; Validated 98.98
PRK06059399 lipid-transfer protein; Provisional 98.94
PRK09116405 3-oxoacyl-(acyl carrier protein) synthase II; Revi 98.92
PRK05952381 3-oxoacyl-(acyl carrier protein) synthase II; Revi 98.91
PRK08170426 acetyl-CoA acetyltransferase; Provisional 98.9
cd00826393 nondecarbox_cond_enzymes nondecarboxylating conden 98.87
PRK07801382 acetyl-CoA acetyltransferase; Provisional 98.86
PRK09185392 3-oxoacyl-(acyl carrier protein) synthase I; Revie 98.85
PRK06954397 acetyl-CoA acetyltransferase; Provisional 98.85
PLN02836437 3-oxoacyl-[acyl-carrier-protein] synthase 98.85
PLN02787540 3-oxoacyl-[acyl-carrier-protein] synthase II 98.83
cd00832399 CLF Chain-length factor (CLF) is a factor required 98.82
PF00108264 Thiolase_N: Thiolase, N-terminal domain; InterPro: 98.81
PRK07967406 3-oxoacyl-(acyl carrier protein) synthase I; Revie 98.79
PTZ00050421 3-oxoacyl-acyl carrier protein synthase; Provision 98.79
PRK06065392 acetyl-CoA acetyltransferase; Provisional 98.79
PRK07910418 3-oxoacyl-(acyl carrier protein) synthase II; Revi 98.77
PRK08257 498 acetyl-CoA acetyltransferase; Validated 98.72
PRK13359400 beta-ketoadipyl CoA thiolase; Provisional 98.69
PRK08963428 fadI 3-ketoacyl-CoA thiolase; Reviewed 98.67
PLN02287452 3-ketoacyl-CoA thiolase 98.67
PRK07851406 acetyl-CoA acetyltransferase; Provisional 98.66
PRK07516389 acetyl-CoA acetyltransferase; Provisional 98.65
PF00109254 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal 98.65
PRK09050401 beta-ketoadipyl CoA thiolase; Validated 98.63
PRK07850387 acetyl-CoA acetyltransferase; Provisional 98.62
PRK06633392 acetyl-CoA acetyltransferase; Provisional 98.61
PRK06289403 acetyl-CoA acetyltransferase; Provisional 98.61
PRK08131401 acetyl-CoA acetyltransferase; Provisional 98.6
TIGR02430400 pcaF beta-ketoadipyl CoA thiolase. Members of this 98.6
PRK06366388 acetyl-CoA acetyltransferase; Provisional 98.58
TIGR02446430 FadI fatty oxidation complex, beta subunit FadI. T 98.56
PRK14691342 3-oxoacyl-(acyl carrier protein) synthase II; Prov 98.55
PRK06504390 acetyl-CoA acetyltransferase; Provisional 98.53
PRK06157398 acetyl-CoA acetyltransferase; Validated 98.5
PRK08947387 fadA 3-ketoacyl-CoA thiolase; Reviewed 98.49
PRK06519398 3-oxoacyl-(acyl carrier protein) synthase II; Revi 98.48
TIGR02813 2582 omega_3_PfaA polyketide-type polyunsaturated fatty 98.47
PTZ00455438 3-ketoacyl-CoA thiolase; Provisional 98.46
PRK06066385 acetyl-CoA acetyltransferase; Provisional 98.43
PRK06365430 acetyl-CoA acetyltransferase; Provisional 98.43
TIGR02445385 fadA fatty oxidation complex, beta subunit FadA. T 98.41
PRK09268427 acetyl-CoA acetyltransferase; Provisional 98.37
PF07451329 SpoVAD: Stage V sporulation protein AD (SpoVAD); I 98.23
PRK07937352 lipid-transfer protein; Provisional 98.2
COG0304412 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li 98.09
PRK08142388 acetyl-CoA acetyltransferase; Provisional 98.03
PRK07855386 lipid-transfer protein; Provisional 97.9
COG3321 1061 Polyketide synthase modules and related proteins [ 97.76
KOG1389435 consensus 3-oxoacyl CoA thiolase [Lipid transport 97.7
COG0183392 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis 97.57
KOG1390396 consensus Acetyl-CoA acetyltransferase [Lipid tran 97.39
PF08540282 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A s 96.87
KOG1394440 consensus 3-oxoacyl-(acyl-carrier-protein) synthas 96.57
KOG1406408 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 96.46
KOG1391396 consensus Acetyl-CoA acetyltransferase [Lipid tran 95.06
PF0854190 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC 94.09
TIGR00748345 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase 93.45
PRK06025417 acetyl-CoA acetyltransferase; Provisional 93.45
PRK06816378 3-oxoacyl-(acyl carrier protein) synthase III; Rev 93.29
PRK09258338 3-oxoacyl-(acyl carrier protein) synthase III; Rev 92.53
PRK05963326 3-oxoacyl-(acyl carrier protein) synthase II; Revi 92.31
cd00825332 decarbox_cond_enzymes decarboxylating condensing e 91.62
PRK07204329 3-oxoacyl-(acyl carrier protein) synthase III; Rev 91.46
KOG1392465 consensus Acetyl-CoA acetyltransferase [Lipid tran 91.0
TIGR00747318 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III 90.85
PRK12879325 3-oxoacyl-(acyl carrier protein) synthase III; Rev 90.78
PRK09352319 3-oxoacyl-(acyl carrier protein) synthase III; Rev 90.78
PRK04262347 hypothetical protein; Provisional 90.2
PLN02326379 3-oxoacyl-[acyl-carrier-protein] synthase III 89.63
PRK06840339 hypothetical protein; Validated 89.51
cd00327254 cond_enzymes Condensing enzymes; Family of enzymes 89.49
PRK13359400 beta-ketoadipyl CoA thiolase; Provisional 89.05
cd00830320 KAS_III Ketoacyl-acyl carrier protein synthase III 88.97
PRK09050401 beta-ketoadipyl CoA thiolase; Validated 88.79
PRK07515372 3-oxoacyl-(acyl carrier protein) synthase III; Rev 88.57
CHL00203326 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr 88.2
PF13723218 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina 87.49
PRK06954397 acetyl-CoA acetyltransferase; Provisional 86.68
TIGR02430400 pcaF beta-ketoadipyl CoA thiolase. Members of this 86.65
PRK06366388 acetyl-CoA acetyltransferase; Provisional 86.48
COG3425377 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi 85.46
PRK06147348 3-oxoacyl-(acyl carrier protein) synthase; Validat 85.1
PRK06504390 acetyl-CoA acetyltransferase; Provisional 84.87
PF02803123 Thiolase_C: Thiolase, C-terminal domain; InterPro: 84.8
PRK09052399 acetyl-CoA acetyltransferase; Provisional 83.95
PRK05656393 acetyl-CoA acetyltransferase; Provisional 83.51
cd00831361 CHS_like Chalcone and stilbene synthases; plant-sp 82.15
PLN02287452 3-ketoacyl-CoA thiolase 82.04
PRK06445394 acetyl-CoA acetyltransferase; Provisional 82.02
PRK08242402 acetyl-CoA acetyltransferase; Validated 81.93
PRK09051394 beta-ketothiolase; Provisional 81.3
PRK06690361 acetyl-CoA acetyltransferase; Provisional 81.22
PRK07851406 acetyl-CoA acetyltransferase; Provisional 81.0
>PLN02192 3-ketoacyl-CoA synthase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-122  Score=998.04  Aligned_cols=511  Identities=90%  Similarity=1.412  Sum_probs=485.2

Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhhHHH
Q 008975           36 MTEPKPNTPLIPPTSPSRNLPDFKKSVKLKYVKLGYHYLITHGMFLFLSPLVVIVAAQLSTFSFQDLYDLWEHLQYNLIS  115 (547)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (547)
                      |+|+...++. ..+++|++||||++|+|+||||+||||+++|+++++++|++++++.++.+++++|++.+|..+++++++
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (511)
T PLN02192          1 MSEVNQKTPL-IEPSSSRKLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVVVIAAQLSTFSIQDLHDLWEHLKFNLIS   79 (511)
T ss_pred             CccccccCcc-cccchhhhcchHHHhhhhhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            4454433332 234789999999999999999999999999999999999998889999999999998899988889999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCeEEEEEeEEcCCCCceecHHHHHHHhhhcCCCChHhHHHHHHHHHHhCCceEEecCCc
Q 008975          116 VIICSTLLVFLLTLYFLTRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEA  195 (547)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~v~Iv~~g~y~P~~~~~vt~e~~~e~~~~~~~~~~~~~~f~~rI~~~sGI~er~~~~~~  195 (547)
                      ++.+++++++++++|+|+||++|||+||+||+|++++++|.+.++|+.+..|.|++++++||+|+++|||+|++||+|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sglg~~t~~p~~  159 (511)
T PLN02192         80 VILCSTLLVFLSTLYFLTRPRPVYLVDFSCYKPDDSRKCTRKIFMDRSKLTGSFTEENLEFQRKILERSGLGESTYLPEA  159 (511)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcccCChh
Confidence            89888888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCCccEEEEeccCCCCCCChHHHHHHHcCCCCceeEEEecCccch
Q 008975          196 VLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCS  275 (547)
Q Consensus       196 ~~~~~~~~~ma~~r~ea~~l~~~Aa~~aL~kagi~p~dID~LIv~~s~~~~~Psla~~I~~~lGl~~~~~~fdL~gmgCs  275 (547)
                      .++.|++.+|+++|+|+++++++|+++||+++|++|+|||+||++|++++++||++++|+++||+++++.+|||+|||||
T Consensus       160 ~~~~~~~~~~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr~~i~afdLsgmGCS  239 (511)
T PLN02192        160 VLNVPPNPCMAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNILSYNLGGMGCS  239 (511)
T ss_pred             hccCCCCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCCCCceEEEcccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEccccCcccCCCCccccccccccccceEEEEEeccCCCcccccceeeeEEEeeec
Q 008975          276 AGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKG  355 (547)
Q Consensus       276 ggl~AL~lA~~lL~sg~~~~aLVVstE~~S~~~~~~~dr~~lv~~~lFGDGAAAvLLs~~~~~~~~a~~~L~~~v~t~~~  355 (547)
                      ||++||++|+++|+++++++||||++|++|.+||.++||+++++|++|||||||+||++++.++++++|+|.++++++.+
T Consensus       240 ggl~aLdlA~~lL~a~~~~~aLVVstE~~S~n~y~g~drs~lv~n~LFgDGAaAvLLs~~~~~~~~~k~~L~~~vrt~~~  319 (511)
T PLN02192        240 AGLISIDLAKHLLQVHPNSYALVISMENITLNWYFGNDRSMLVSNCLFRMGGAAILLSNKRSDRRRSKYQLVHTVRTHKG  319 (511)
T ss_pred             hHHHHHHHHHHHHHcCCCCeEEEEEEEeccccCCCCCCHHHHhccccccccceEEEEeccccccccccceeeeeEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999766555689999999999999


Q ss_pred             CCCCcccceeeccCCCCccccccchhhHHHhhhhhhccccccCCCcccchhhHHHHHHHHHHHHHHhhhccccccccccc
Q 008975          356 ADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAF  435 (547)
Q Consensus       356 sd~~~~~~v~~~ed~~G~~g~~Lskdl~~v~g~~lk~ni~~lgp~vlP~se~~~~~~~~~~r~v~~~a~~~~ip~~~~di  435 (547)
                      +|++.|+|+++++|++|+.|+.|+||+|.++|++++.|++++||.++|.+|+.+++++|.++++|+.+++.|+|+++.+|
T Consensus       320 ~dd~~~~~v~~~ed~~g~~g~~Lskdl~~vag~al~~ni~~l~p~vlp~~e~~~~~~~m~gr~vfk~~~~~~~p~~~~~I  399 (511)
T PLN02192        320 ADDKCFACVTQEEDSAGKIGVSLSKDLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKLKPYIPDFKLAF  399 (511)
T ss_pred             CChhhccceecccccccceeeEecchhhhhhhhhhhhhhhhcccccCccchhhceeEEEcChHHHHHHhhhccHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999988899999999999998999999999


Q ss_pred             cEEEeccCCHHHHHHHHHHcCCCcccccccccccccccccccchHHHHHHHHHHcCCCCCCCEEEEEEecchhhheeEEE
Q 008975          436 EHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVW  515 (547)
Q Consensus       436 d~f~~H~~gr~vl~~v~k~LgL~~e~~e~S~~tl~r~GNtsSaSi~~~La~~~~~gri~~GDrVlliafGsG~~~~sav~  515 (547)
                      ||||+||+|++++|.++++||++++++|+|+++++|||||||||+||+|++++++|++++||+|||+|||+||+||++||
T Consensus       400 dhf~iHqggr~IId~v~k~LgL~~~~~e~sr~tL~rfGNTSSaSI~~aL~~~eakgrik~GDrVl~iaFGsGf~~~sav~  479 (511)
T PLN02192        400 EHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVW  479 (511)
T ss_pred             ceEeeccCCHHHHHHHHHHcCCCchhhhHHHHHHhHcCChHHhHHHHHHHHHHHcCCCCCCCEEEEEEEcchHhhhhhhe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccCCcccCCCCccccccCCCCCCCCCCC
Q 008975          516 KALRSINSAKEKNPWMDEIHHFPVDVPKVSTI  547 (547)
Q Consensus       516 r~~~~~~~~~~~~~w~~~i~~~p~~~~~~~~~  547 (547)
                      ||++++++..+.|||+||||+|||++|++..|
T Consensus       480 ~~~~~~~~~~~~~~w~~~i~~yp~~~~~~~~~  511 (511)
T PLN02192        480 KALRTVNPAKEKNPWMDEIHEFPVDVPKVSTI  511 (511)
T ss_pred             eeecccCCcccCCCchhhHHhCCCCCCCCCCC
Confidence            99999987642499999999999999998764

>PLN02854 3-ketoacyl-CoA synthase Back     alignment and domain information
>PLN02377 3-ketoacyl-CoA synthase Back     alignment and domain information
>PLN02932 3-ketoacyl-CoA synthase Back     alignment and domain information
>PLN00415 3-ketoacyl-CoA synthase Back     alignment and domain information
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species Back     alignment and domain information
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] Back     alignment and domain information
>PLN03172 chalcone synthase family protein; Provisional Back     alignment and domain information
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs Back     alignment and domain information
>PLN03168 chalcone synthase; Provisional Back     alignment and domain information
>PLN03169 chalcone synthase family protein; Provisional Back     alignment and domain information
>PLN03173 chalcone synthase; Provisional Back     alignment and domain information
>PLN03170 chalcone synthase; Provisional Back     alignment and domain information
>PLN03171 chalcone synthase-like protein; Provisional Back     alignment and domain information
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III Back     alignment and domain information
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional Back     alignment and domain information
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK06840 hypothetical protein; Validated Back     alignment and domain information
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems Back     alignment and domain information
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III Back     alignment and domain information
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK04262 hypothetical protein; Provisional Back     alignment and domain information
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative Back     alignment and domain information
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes Back     alignment and domain information
>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade Back     alignment and domain information
>PLN02577 hydroxymethylglutaryl-CoA synthase Back     alignment and domain information
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 Back     alignment and domain information
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] Back     alignment and domain information
>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade Back     alignment and domain information
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction Back     alignment and domain information
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction Back     alignment and domain information
>PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase Back     alignment and domain information
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 Back     alignment and domain information
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 Back     alignment and domain information
>KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism] Back     alignment and domain information
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated Back     alignment and domain information
>TIGR02845 spore_V_AD stage V sporulation protein AD Back     alignment and domain information
>PRK08304 stage V sporulation protein AD; Validated Back     alignment and domain information
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II Back     alignment and domain information
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine Back     alignment and domain information
>smart00825 PKS_KS Beta-ketoacyl synthase Back     alignment and domain information
>PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways Back     alignment and domain information
>PRK09051 beta-ketothiolase; Provisional Back     alignment and domain information
>PRK05656 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases Back     alignment and domain information
>PRK06064 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism Back     alignment and domain information
>PRK08313 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK09052 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK12578 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases Back     alignment and domain information
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II Back     alignment and domain information
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations Back     alignment and domain information
>PRK05790 putative acyltransferase; Provisional Back     alignment and domain information
>PRK06025 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06445 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK12404 stage V sporulation protein AD; Provisional Back     alignment and domain information
>PRK07661 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06158 thiolase; Provisional Back     alignment and domain information
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated Back     alignment and domain information
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK06690 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08256 lipid-transfer protein; Provisional Back     alignment and domain information
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK07108 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PLN02644 acetyl-CoA C-acetyltransferase Back     alignment and domain information
>PRK06205 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08235 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08242 acetyl-CoA acetyltransferase; Validated Back     alignment and domain information
>PRK06059 lipid-transfer protein; Provisional Back     alignment and domain information
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK08170 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine Back     alignment and domain information
>PRK07801 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed Back     alignment and domain information
>PRK06954 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase Back     alignment and domain information
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II Back     alignment and domain information
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria Back     alignment and domain information
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 Back     alignment and domain information
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed Back     alignment and domain information
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional Back     alignment and domain information
>PRK06065 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>PRK08257 acetyl-CoA acetyltransferase; Validated Back     alignment and domain information
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional Back     alignment and domain information
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed Back     alignment and domain information
>PLN02287 3-ketoacyl-CoA thiolase Back     alignment and domain information
>PRK07851 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07516 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 Back     alignment and domain information
>PRK09050 beta-ketoadipyl CoA thiolase; Validated Back     alignment and domain information
>PRK07850 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06633 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06289 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08131 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase Back     alignment and domain information
>PRK06366 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI Back     alignment and domain information
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional Back     alignment and domain information
>PRK06504 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06157 acetyl-CoA acetyltransferase; Validated Back     alignment and domain information
>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed Back     alignment and domain information
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA Back     alignment and domain information
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional Back     alignment and domain information
>PRK06066 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06365 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA Back     alignment and domain information
>PRK09268 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long Back     alignment and domain information
>PRK07937 lipid-transfer protein; Provisional Back     alignment and domain information
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK08142 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07855 lipid-transfer protein; Provisional Back     alignment and domain information
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] Back     alignment and domain information
>COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] Back     alignment and domain information
>KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] Back     alignment and domain information
>PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase Back     alignment and domain information
>KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] Back     alignment and domain information
>KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] Back     alignment and domain information
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 Back     alignment and domain information
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative Back     alignment and domain information
>PRK06025 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed Back     alignment and domain information
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction Back     alignment and domain information
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] Back     alignment and domain information
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III Back     alignment and domain information
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>PRK04262 hypothetical protein; Provisional Back     alignment and domain information
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III Back     alignment and domain information
>PRK06840 hypothetical protein; Validated Back     alignment and domain information
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction Back     alignment and domain information
>PRK13359 beta-ketoadipyl CoA thiolase; Provisional Back     alignment and domain information
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems Back     alignment and domain information
>PRK09050 beta-ketoadipyl CoA thiolase; Validated Back     alignment and domain information
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed Back     alignment and domain information
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional Back     alignment and domain information
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain Back     alignment and domain information
>PRK06954 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase Back     alignment and domain information
>PRK06366 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] Back     alignment and domain information
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated Back     alignment and domain information
>PRK06504 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 Back     alignment and domain information
>PRK09052 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK05656 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs Back     alignment and domain information
>PLN02287 3-ketoacyl-CoA thiolase Back     alignment and domain information
>PRK06445 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK08242 acetyl-CoA acetyltransferase; Validated Back     alignment and domain information
>PRK09051 beta-ketothiolase; Provisional Back     alignment and domain information
>PRK06690 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information
>PRK07851 acetyl-CoA acetyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
1u0m_A382 Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalen 2e-12
1tee_A393 Crystal Structure Of C205f Mutant Of Pks18 From Myc 7e-10
1ted_A393 Crystal Structure Of A Type Iii Polyketide Synthase 8e-10
1xes_A413 Crystal Structure Of Stilbene Synthase From Pinus S 3e-07
1u0u_A397 An Aldol Switch Discovered In Stilbene Synthases Me 3e-07
1u0v_A393 An Aldol Switch Discovered In Stilbene Synthases Me 5e-07
1cgz_A389 Chalcone Synthase From Alfalfa Complexed With Resve 5e-07
1z1e_A390 Crystal Structure Of Stilbene Synthase From Arachis 1e-06
1i88_A389 Chalcone Synthase (G256v) Length = 389 5e-06
3ale_A416 A Type Iii Polyketide Synthase That Produces Diaryl 5e-06
1cml_A389 Chalcone Synthase From Alfalfa Complexed With Malon 8e-06
3tsy_A979 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr 8e-06
1chw_A389 Chalcone Synthase From Alfalfa Complexed With Hexan 1e-05
1bi5_A389 Chalcone Synthase From Alfalfa Length = 389 1e-05
1bq6_A388 Chalcone Synthase From Alfalfa With Coenzyme A Leng 1e-05
1i89_A389 Chalcone Synthase (G256l) Length = 389 1e-05
1i86_A389 Chalcone Synthase, G256a Mutant Length = 389 1e-05
1i8b_A389 Chalcone Synthase (g256f) Length = 389 2e-05
1qlv_A402 Pyrone Synthase (Pys) From Gerbera Hybrida Length = 3e-05
3oit_A387 Crystal Structure Of Curcuminoid Synthase Cus From 3e-05
2h84_A374 Crystal Structure Of The C-terminal Type Iii Polyke 4e-05
1d6h_A387 Chalone Synthase (N336a Mutant Complexed With Coa) 8e-05
1d6i_A388 Chalcone Synthase (H303q Mutant) Length = 388 9e-05
3awj_A402 Crystal Structure Of The Huperzia Serrata Polyketid 1e-04
1jwx_A389 Chalcone Synthase--F215s Mutant Length = 389 1e-04
2d3m_A406 Pentaketide Chromone Synthase Complexed With Coenzy 6e-04
2d51_A406 Pentaketide Chromone Synthase (M207g Mutant) Length 7e-04
2ebd_A309 Crystal Structure Of 3-oxoacyl-[acyl-carrier-protei 8e-04
2p0u_A413 Crystal Structure Of Marchantia Polymorpha Stilbene 8e-04
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene Synthase (Thns) From Streptomyces Coelicolor A3(2): A Bacterial Type Iii Polyketide Synthase (Pks) Provides Insights Into Enzymatic Control Of Reactive Polyketide Intermediates Length = 382 Back     alignment and structure 
Iteration: 1

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 155/401 (38%), Gaps = 97/401 (24%)
Query: 136 RPVYLVDFSCYKPEESRKCTKRIFMDQSRM---------TGTFTEENLQFQKKILERSGL 186
           RP   V       EE+ +  +R   D  ++         TG  T   +Q  +  LE  G 
Sbjct: 14  RPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGF 73
Query: 187 GDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILI-VNCSLFN 245
            D   + E           +EA+    AV+  A+D+      +   DI ++I V+C+ F 
Sbjct: 74  EDRNKVYE-----------REAKSRVPAVIQRALDD----AELLATDIDVIIYVSCTGFM 118
Query: 246 PTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENIT 305
             PSL+A +IN            +  +GC+AG  +I+ A++    +P + AL+++ E  +
Sbjct: 119 -MPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCS 177
Query: 306 LNWYFGN-DRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACV 364
           L +   +     L+ N LF  G AA ++  R                             
Sbjct: 178 LCYQPTDLGVGSLLCNGLFGDGIAAAVVRGR----------------------------- 208
Query: 365 TQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLF-------FATLVGK 417
                  G  GV L +N                G  ++P +E  +        F  L+ K
Sbjct: 209 -------GGTGVRLERN----------------GSYLIPKTEDWIMYDVKATGFHFLLDK 245
Query: 418 KLFKMKIKPYIPDFK-LAFEH---------FCIHAGGRAVLDELEKNLQLSDWHMEPSRM 467
           ++    ++P  P  K LA EH         + +HAGG  +LD+L   L++       SR 
Sbjct: 246 RV-PATMEPLAPALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRA 304
Query: 468 TLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGF 508
           TL  +GN +S+ +   L     +G +++G R     FG G 
Sbjct: 305 TLTEYGNIASAVVLDALRRLFDEGGVEEGARGLLAGFGPGI 345
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From Mycobacterium Tuberculosis Length = 393 Back     alignment and structure
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18 From Mycobacterium Tuberculosis Length = 393 Back     alignment and structure
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus Sylvestris Length = 413 Back     alignment and structure
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates Cyclization Specificity Of Type Iii Polyketide Synthases: Pine Stilbene Synthase Structure Length = 397 Back     alignment and structure
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates Cyclization Of Specificity Of Type Iii Polyketide Synthases: 18xchs Structure Length = 393 Back     alignment and structure
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol Length = 389 Back     alignment and structure
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis Hypogaea Length = 390 Back     alignment and structure
>pdb|1I88|A Chain A, Chalcone Synthase (G256v) Length = 389 Back     alignment and structure
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces Diarylheptanoid Length = 416 Back     alignment and structure
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa Length = 389 Back     alignment and structure
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 Back     alignment and structure
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa Length = 389 Back     alignment and structure
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa Length = 389 Back     alignment and structure
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A Length = 388 Back     alignment and structure
>pdb|1I89|A Chain A, Chalcone Synthase (G256l) Length = 389 Back     alignment and structure
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant Length = 389 Back     alignment and structure
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f) Length = 389 Back     alignment and structure
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida Length = 402 Back     alignment and structure
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza Sativa Length = 387 Back     alignment and structure
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks Hybrid From Dictyostelium) Length = 374 Back     alignment and structure
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa) Length = 387 Back     alignment and structure
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant) Length = 388 Back     alignment and structure
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide Synthase 1 Complexed With Coa-Sh Length = 402 Back     alignment and structure
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant Length = 389 Back     alignment and structure
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A Length = 406 Back     alignment and structure
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant) Length = 406 Back     alignment and structure
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein] Synthase Iii From Aquifex Aeolicus Vf5 Length = 309 Back     alignment and structure
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha Stilbenecarboxylate Synthase 2 (Stcs2) Length = 413 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
2h84_A374 Steely1; thiolase-fold, type III polyketide syntha 1e-117
3oit_A387 OS07G0271500 protein; type III polyketide synthase 1e-111
1i88_A389 CHS2, chalcone synthase 2; polyketide synthase, tr 1e-79
3awk_A402 Chalcone synthase-like polyketide synthase; type I 5e-79
3a5r_A387 Benzalacetone synthase; chalcone synthase, type II 5e-77
3v7i_A413 Putative polyketide synthase; type III polyketide 3e-76
2p0u_A413 Stilbenecarboxylate synthase 2; polyketide synthas 7e-65
2d3m_A406 Pentaketide chromone synthase; chalcone synthase, 2e-64
1xes_A413 Dihydropinosylvin synthase; native structure, tran 9e-64
3e1h_A465 PKSIIINC, putative uncharacterized protein; resorc 4e-49
1ee0_A402 2-pyrone synthase; polyketide synthase, thiolase f 7e-49
3euo_A379 Type III pentaketide synthase; alpha helix, acyltr 2e-46
1u0m_A382 Putative polyketide synthase; type III polyketide 3e-35
1ted_A393 PKS18; thiolase fold, substrate binding tunnel, tr 7e-34
3ov2_A393 Curcumin synthase; type III polyketide synthase, t 3e-29
3s3l_A357 CERJ; acyltransferase, FABH homologue, KS III homo 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
3led_A392 3-oxoacyl-acyl carrier protein synthase III; struc 8e-10
3gwa_A365 3-oxoacyl-(acyl-carrier-protein) synthase III; str 9e-08
1ub7_A322 3-oxoacyl-[acyl-carrier protein] synthase; fatty a 1e-07
3sqz_A425 Putative hydroxymethylglutaryl-COA synthase; thiol 1e-06
3h78_A359 PQS biosynthetic enzyme; PQSD, anthranilic acid, a 1e-06
3s21_A345 3-oxoacyl-[ACP] synthase III; non-decarboxylative 2e-06
4efi_A354 3-oxoacyl-(acyl-carrier protein) synthase; structu 3e-06
3tsy_A979 Fusion protein 4-coumarate--COA ligase 1, resvera 3e-06
2p8u_A478 Hydroxymethylglutaryl-COA synthase, cytoplasmic; h 4e-06
2ebd_A309 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 1e-05
1hnj_A317 Beta-ketoacyl-acyl carrier protein synthase III; F 2e-05
1zow_A313 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB 2e-05
3il3_A323 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 2e-05
2x3e_A331 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, 2e-05
4dfe_A333 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci 4e-05
1mzj_A339 Beta-ketoacylsynthase III; beta-ketosynthase, arom 4e-05
2v4w_A460 Hydroxymethylglutaryl-COA synthase, mitochondrial; 7e-05
1u6e_A335 3-oxoacyl-[acyl-carrier-protein] synthase III; tra 9e-05
3v4n_A388 HMG-COA synthase; hydroxymethylglutaryl-COA syntha 2e-04
3il6_A321 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 2e-04
1xpm_A396 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s 3e-04
2f82_A450 HMG-COA synthase; HMGS1, transferase; 2.10A {Brass 4e-04
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} Length = 374 Back     alignment and structure
 Score =  351 bits (903), Expect = e-117
 Identities = 65/394 (16%), Positives = 140/394 (35%), Gaps = 39/394 (9%)

Query: 134 RPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSG-----LGD 188
                +++      P      +++   D      +   E  +  K+I E+S      L  
Sbjct: 10  SNNNSFVLGIGISVPG--EPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVR 67

Query: 189 STYLPEAVLNIPPNPSMKE----ARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLF 244
               PE  +      ++ +     +K    +   A             DI  ++   S  
Sbjct: 68  DYTKPENSIKFRHLETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTG 127

Query: 245 NPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENI 304
              P ++  +I+   L  ++   +L  MGC AGL S+  A +L +  P +  LV+  E  
Sbjct: 128 IIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVC 187

Query: 305 TLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACV 364
           +L++   +   ++V++ +F  G AA ++           Y ++ ++       +N     
Sbjct: 188 SLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAMVW- 246

Query: 365 TQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKI 424
              +  +    + L  ++  V G  ++  +                  TL+ K   +   
Sbjct: 247 ---DLEKEGWNLGLDASIPIVIGSGIEAFVD-----------------TLLDKAKLQTST 286

Query: 425 KPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYEL 484
                D       F IH GG+++L  +E +L +     + +    + +GN SS+S+ + +
Sbjct: 287 AISAKDC-----EFLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVM 341

Query: 485 AYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKAL 518
            ++           +  +AFG G        K +
Sbjct: 342 DHARKSK--SLPTYSISLAFGPGLAFEGCFLKNV 373
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A Length = 387 Back     alignment and structure
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A Length = 387 Back     alignment and structure
>3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} Length = 413 Back     alignment and structure
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A Length = 413 Back     alignment and structure
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} Length = 465 Back     alignment and structure
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 Length = 382 Back     alignment and structure
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A Length = 393 Back     alignment and structure
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A Length = 393 Back     alignment and structure
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* Length = 357 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} Length = 392 Back     alignment and structure
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A Length = 365 Back     alignment and structure
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 Length = 322 Back     alignment and structure
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* Length = 359 Back     alignment and structure
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A Length = 345 Back     alignment and structure
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} Length = 354 Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 Back     alignment and structure
>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478 Back     alignment and structure
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} Length = 309 Back     alignment and structure
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* Length = 317 Back     alignment and structure
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A Length = 313 Back     alignment and structure
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} Length = 323 Back     alignment and structure
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} Length = 331 Back     alignment and structure
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} Length = 333 Back     alignment and structure
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 Length = 339 Back     alignment and structure
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A Length = 335 Back     alignment and structure
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Length = 388 Back     alignment and structure
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* Length = 321 Back     alignment and structure
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396 Back     alignment and structure
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Length = 450 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
4ewp_A350 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans 100.0
3e1h_A465 PKSIIINC, putative uncharacterized protein; resorc 100.0
3il6_A321 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 100.0
3oit_A387 OS07G0271500 protein; type III polyketide synthase 100.0
3euo_A379 Type III pentaketide synthase; alpha helix, acyltr 100.0
3ov2_A393 Curcumin synthase; type III polyketide synthase, t 100.0
3gwa_A365 3-oxoacyl-(acyl-carrier-protein) synthase III; str 100.0
3il3_A323 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 100.0
3v7i_A413 Putative polyketide synthase; type III polyketide 100.0
4dfe_A333 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci 100.0
2h84_A374 Steely1; thiolase-fold, type III polyketide syntha 100.0
4efi_A354 3-oxoacyl-(acyl-carrier protein) synthase; structu 100.0
1i88_A389 CHS2, chalcone synthase 2; polyketide synthase, tr 100.0
2p0u_A413 Stilbenecarboxylate synthase 2; polyketide synthas 100.0
3h78_A359 PQS biosynthetic enzyme; PQSD, anthranilic acid, a 100.0
3awk_A402 Chalcone synthase-like polyketide synthase; type I 100.0
3a5r_A387 Benzalacetone synthase; chalcone synthase, type II 100.0
1xes_A413 Dihydropinosylvin synthase; native structure, tran 100.0
3s21_A345 3-oxoacyl-[ACP] synthase III; non-decarboxylative 100.0
1ee0_A402 2-pyrone synthase; polyketide synthase, thiolase f 100.0
1ted_A393 PKS18; thiolase fold, substrate binding tunnel, tr 100.0
2d3m_A406 Pentaketide chromone synthase; chalcone synthase, 100.0
3led_A392 3-oxoacyl-acyl carrier protein synthase III; struc 100.0
1u0m_A382 Putative polyketide synthase; type III polyketide 100.0
2x3e_A331 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, 100.0
1mzj_A339 Beta-ketoacylsynthase III; beta-ketosynthase, arom 100.0
3s3l_A357 CERJ; acyltransferase, FABH homologue, KS III homo 100.0
1hnj_A317 Beta-ketoacyl-acyl carrier protein synthase III; F 100.0
3tsy_A979 Fusion protein 4-coumarate--COA ligase 1, resvera 100.0
1zow_A313 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB 100.0
2ebd_A309 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 100.0
1u6e_A335 3-oxoacyl-[acyl-carrier-protein] synthase III; tra 100.0
1ub7_A322 3-oxoacyl-[acyl-carrier protein] synthase; fatty a 100.0
3v4n_A388 HMG-COA synthase; hydroxymethylglutaryl-COA syntha 100.0
2v4w_A460 Hydroxymethylglutaryl-COA synthase, mitochondrial; 100.0
2p8u_A478 Hydroxymethylglutaryl-COA synthase, cytoplasmic; h 100.0
3sqz_A425 Putative hydroxymethylglutaryl-COA synthase; thiol 100.0
2f82_A450 HMG-COA synthase; HMGS1, transferase; 2.10A {Brass 100.0
1xpm_A396 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s 100.0
2wya_A460 Hydroxymethylglutaryl-COA synthase, mitochondrial; 100.0
3lma_A347 Stage V sporulation protein AD (spovad); NESG, str 99.85
4e1l_A395 Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, 99.71
3o04_A413 LMO2201 protein, beta-keto-acyl carrier protein sy 99.71
3ss6_A394 Acetyl-COA acetyltransferase; structural genomics, 99.7
2gqd_A437 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli 99.7
1tqy_A424 Beta-ketoacyl synthase/acyl transferase; alpha-bet 99.69
4dd5_A396 Acetyl-COA acetyltransferase; structural genomics, 99.68
3ho9_A427 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, 99.67
1j3n_A408 3-oxoacyl-(acyl-carrier protein) synthase II; cond 99.67
3kzu_A428 3-oxoacyl-(acyl-carrier-protein) synthase II; seat 99.64
1e5m_A416 KAS II, beta ketoacyl acyl carrier protein synthas 99.62
1ox0_A430 Beta ketoacyl-acyl carrier protein synthase; trans 99.62
3svk_A407 Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, 99.6
2iwz_A438 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho 99.59
2gp6_A434 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol 99.59
1tqy_B415 Actinorhodin polyketide putative beta-ketoacyl SY; 99.59
4ewg_A412 Beta-ketoacyl synthase; ssgcid, structural genomic 99.58
3goa_A387 3-ketoacyl-COA thiolase; metabolism, fatty acid, p 99.58
2vu1_A392 Acetyl-COA acetyltransferase; acyltransferase, PHB 99.55
4ddo_A451 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci 99.54
2iik_A418 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m 99.54
1ulq_A401 Putative acetyl-COA acetyltransferase; structural 99.54
2ix4_A431 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke 99.53
1wl4_A397 Acetyl-coenzyme A acetyltransferase 2; thiolase fo 99.53
2vba_A406 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop 99.52
2wge_A416 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta 99.5
3mqd_A428 Beta-ketoacyl synthase; ssgcid, ALS collaborative 99.5
1wdk_C390 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame 99.49
2ib8_A395 Acetyl-COA acetyltransferase; thiolase fold, potas 99.48
1afw_A393 3-ketoacetyl-COA thiolase; fatty acid metabolism; 99.47
2wu9_A442 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o 99.44
2qo3_A 915 Eryaii erythromycin polyketide synthase modules 3; 99.37
2hg4_A 917 DEBS, 6-deoxyerythronolide B synthase; ketosynthas 99.36
3hhd_A 965 Fatty acid synthase; transferase, multienzyme, meg 99.31
4egv_A 520 Acetyl-COA acetyltransferase; NEW SUB-family, thio 98.88
3zen_D3089 Fatty acid synthase; transferase, mycolic acid bio 98.7
2vz8_A 2512 Fatty acid synthase; transferase, phosphopantethei 98.29
2pff_A 1688 Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl 97.68
2uv9_A 1878 Fatty acid synthase alpha subunits; fungal, dehydr 97.59
2uv8_A 1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 97.18
1mzj_A339 Beta-ketoacylsynthase III; beta-ketosynthase, arom 93.44
3il3_A323 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 93.03
2x3e_A331 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, 92.78
1u6e_A335 3-oxoacyl-[acyl-carrier-protein] synthase III; tra 92.48
1zow_A313 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB 92.25
4ewp_A350 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans 92.09
3lma_A347 Stage V sporulation protein AD (spovad); NESG, str 91.84
1hnj_A317 Beta-ketoacyl-acyl carrier protein synthase III; F 91.72
2ebd_A309 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, 91.32
1ub7_A322 3-oxoacyl-[acyl-carrier protein] synthase; fatty a 91.2
3s21_A345 3-oxoacyl-[ACP] synthase III; non-decarboxylative 91.04
3h78_A359 PQS biosynthetic enzyme; PQSD, anthranilic acid, a 90.96
4dfe_A333 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci 90.84
3gwa_A365 3-oxoacyl-(acyl-carrier-protein) synthase III; str 90.83
4efi_A354 3-oxoacyl-(acyl-carrier protein) synthase; structu 90.51
1ulq_A401 Putative acetyl-COA acetyltransferase; structural 89.23
3s3l_A357 CERJ; acyltransferase, FABH homologue, KS III homo 88.31
1ted_A393 PKS18; thiolase fold, substrate binding tunnel, tr 88.13
1u0m_A382 Putative polyketide synthase; type III polyketide 87.97
3svk_A407 Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, 87.56
2vu1_A392 Acetyl-COA acetyltransferase; acyltransferase, PHB 87.15
4e1l_A395 Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, 86.99
3ss6_A394 Acetyl-COA acetyltransferase; structural genomics, 85.05
4dd5_A396 Acetyl-COA acetyltransferase; structural genomics, 84.36
3led_A392 3-oxoacyl-acyl carrier protein synthase III; struc 82.23
2h84_A374 Steely1; thiolase-fold, type III polyketide syntha 81.61
2iik_A418 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m 81.05
1wl4_A397 Acetyl-coenzyme A acetyltransferase 2; thiolase fo 80.77
1wdk_C390 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame 80.69
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} Back     alignment and structure
Probab=100.00  E-value=3.8e-56  Score=464.31  Aligned_cols=330  Identities=19%  Similarity=0.263  Sum_probs=252.6

Q ss_pred             cCCCCeEEEEEeEEcCCCCceecHHHHHHHhhhcCCCChHhHHHHHHHHHHhCCceEEecCCcccCCCCCcchHHHHHHH
Q 008975          133 TRPRPVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEA  212 (547)
Q Consensus       133 ~~~~~v~Iv~~g~y~P~~~~~vt~e~~~e~~~~~~~~~~~~~~f~~rI~~~sGI~er~~~~~~~~~~~~~~~ma~~r~ea  212 (547)
                      .||...+|+++|.|+|+  +++||+|+.+.++.    +++|      |.+++||++|+++.+++    +..+|       
T Consensus         9 ~~~~~srI~g~g~ylP~--~~v~n~el~~~~~~----~~e~------I~~rtGI~~R~~a~~~e----~~~~l-------   65 (350)
T 4ewp_A            9 ERPAASRIVAVGAYRPA--NLVPNEDLIGPIDS----SDEW------IRQRTGIVTRQRATAEE----TVPVM-------   65 (350)
T ss_dssp             CCCSEEEEEEEEEECCS--CEEEHHHHTTTTTC----CHHH------HHHHHCCSEEECCCSSC----CHHHH-------
T ss_pred             cCCCCCEEEEEEEEcCC--CeEcHHHHHHHhCC----CHHH------HHhccCceEEEEcCCCC----CHHHH-------
Confidence            47778899999999999  89999999887754    6766      78899999999998776    23444       


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCccEEEEec-cCCCCCCChHHHHHHHcCCCCceeEEEecCccchHHHHHHHHHHHHHhcC
Q 008975          213 EAVMFGAIDELFAKTSVKPKDIGILIVNC-SLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVH  291 (547)
Q Consensus       213 ~~l~~~Aa~~aL~kagi~p~dID~LIv~~-s~~~~~Psla~~I~~~lGl~~~~~~fdL~gmgCsggl~AL~lA~~lL~sg  291 (547)
                         +.+|+++||+++|++|+|||+||++| +++++.|+++++|+++||++ ++.+||++ +||+|++.||++|.++++++
T Consensus        66 ---a~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~~P~~a~~v~~~LGl~-~~~a~di~-~~C~g~~~aL~~A~~~i~~g  140 (350)
T 4ewp_A           66 ---AVGAAREALERAGLQGSDLDAVIVSTVTFPHATPSAAALVAHEIGAT-PAPAYDVS-AACAGYCYGVAQADALVRSG  140 (350)
T ss_dssp             ---HHHHHHHHHHHTTCCGGGCSEEEEECSCCSCSSSCHHHHHHHHTTCT-TSCEEEEE-CGGGHHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCCchHHHHHHHhCCC-CceEEEee-cchhhHHHHHHHhhhhhhCC
Confidence               59999999999999999999999986 57899999999999999998 57799999 69999999999999999999


Q ss_pred             CCCeEEEEEEccccCcccCCCCccccccccccccceEEEEEeccCCCcccccceeeeEEEeeecCCCCcccceeeccCCC
Q 008975          292 PNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSE  371 (547)
Q Consensus       292 ~~~~aLVVstE~~S~~~~~~~dr~~lv~~~lFGDGAAAvLLs~~~~~~~~a~~~L~~~v~t~~~sd~~~~~~v~~~ed~~  371 (547)
                      +.++||||++|.+|. +.++.||.+   ..+|||||+|++|++.+...         +....+++|++.++.+..+... 
T Consensus       141 ~~~~~Lvv~~E~~s~-~~d~~~~~~---~~lfgDGA~A~vl~~~~~~~---------~~~~~~~sdg~~~~~~~~~~~~-  206 (350)
T 4ewp_A          141 TARHVLVVGVERLSD-VVDPTDRSI---SFLLGDGAGAVIVAASDEPG---------ISPSVWGSDGERWSTISMTHSQ-  206 (350)
T ss_dssp             SCSEEEEEEEEEGGG-GCCTTCTTT---GGGBCEEEEEEEEEEESSCC---------BCCCEEEECGGGTTSEEESSCH-
T ss_pred             CccceeEeeeeecee-ccccccccc---ccccccchheeeeecccCCC---------ccceeeeecccccceeeecCCc-
Confidence            999999999999997 456677775   57999999999999876431         1223445677777666554321 


Q ss_pred             CccccccchhhHHHhhhhhhccccccCCCcccchhhHHHHHHHHHHHHHHhhhccc----------cccccccccEEEec
Q 008975          372 GKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPY----------IPDFKLAFEHFCIH  441 (547)
Q Consensus       372 G~~g~~Lskdl~~v~g~~lk~ni~~lgp~vlP~se~~~~~~~~~~r~v~~~a~~~~----------ip~~~~did~f~~H  441 (547)
                        ....-..+.....++...  +..  .     ......+++|.++++++.+++.+          .....+|||||++|
T Consensus       207 --~~~~~~~~~~~~~~~~~~--~~~--~-----~~~~~~~~~~~g~~v~~~a~~~~~~~i~~~L~~~gl~~~did~~v~H  275 (350)
T 4ewp_A          207 --LELRDAVEHARTTGDASA--ITG--A-----EGMLWPTLRQDGPSVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPH  275 (350)
T ss_dssp             --HHHHHHHHHHHHHSCCTT--TTT--C-----SSCSSCCEEECHHHHHHHHHHTHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred             --cccCcccccccccCCccc--ccc--c-----cccccceeEehhHHHHHHHHHhhhHHHHHHHHhhcCChhHhceEEec
Confidence              000000000000000000  000  0     00000011223333333222110          12236899999999


Q ss_pred             cCCHHHHHHHHHHcCCCcccccccccccccccccccchHHHHHHHHHHcCCCCCCCEEEEEEecchhhheeEEEEE
Q 008975          442 AGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWKA  517 (547)
Q Consensus       442 ~~gr~vl~~v~k~LgL~~e~~e~S~~tl~r~GNtsSaSi~~~La~~~~~gri~~GDrVlliafGsG~~~~sav~r~  517 (547)
                      |+|+++++.+++.||++++++.  .+++++||||||+|+|+.|++++++|++++||+|+++|||+||+|+++||||
T Consensus       276 q~~~~i~~~~~~~Lgl~~~~~~--~~~l~~~GNtssasi~~~L~~~~~~g~~~~Gd~vll~~fG~G~t~~~~vlr~  349 (350)
T 4ewp_A          276 QANMRIIDEFAKQLKLPESVVV--ARDIADAGNTSAASIPLAMHRLLEENPELSGGLALQIGFGAGLVYGAQVVRL  349 (350)
T ss_dssp             CSCHHHHHHHHHHTTCCTTSEE--CCTHHHHCBCGGGHHHHHHHHHHHHCGGGTTSEEEEEEEETTTEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHcCcChHhEE--ecccccccchHHHHHHHHHHHHHHhCCCCCcCEEEEEEEchhhEeEEEEEEe
Confidence            9999999999999999999975  3689999999999999999999999999999999999999999999999997
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} Back     alignment and structure
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* Back     alignment and structure
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A Back     alignment and structure
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A Back     alignment and structure
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A Back     alignment and structure
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} Back     alignment and structure
>3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} Back     alignment and structure
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} Back     alignment and structure
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} Back     alignment and structure
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} Back     alignment and structure
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* Back     alignment and structure
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A Back     alignment and structure
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A Back     alignment and structure
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A Back     alignment and structure
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A Back     alignment and structure
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} Back     alignment and structure
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} Back     alignment and structure
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* Back     alignment and structure
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A Back     alignment and structure
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A Back     alignment and structure
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Back     alignment and structure
>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Back     alignment and structure
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Back     alignment and structure
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Back     alignment and structure
>2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} Back     alignment and structure
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A Back     alignment and structure
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} Back     alignment and structure
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Back     alignment and structure
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} Back     alignment and structure
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Back     alignment and structure
>1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} Back     alignment and structure
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Back     alignment and structure
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Back     alignment and structure
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Back     alignment and structure
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} Back     alignment and structure
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Back     alignment and structure
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Back     alignment and structure
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} Back     alignment and structure
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... Back     alignment and structure
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Back     alignment and structure
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} Back     alignment and structure
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Back     alignment and structure
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A Back     alignment and structure
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Back     alignment and structure
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Back     alignment and structure
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Back     alignment and structure
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* Back     alignment and structure
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* Back     alignment and structure
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A Back     alignment and structure
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A Back     alignment and structure
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Back     alignment and structure
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Back     alignment and structure
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Back     alignment and structure
>4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} Back     alignment and structure
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* Back     alignment and structure
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Back     alignment and structure
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Back     alignment and structure
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} Back     alignment and structure
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} Back     alignment and structure
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A Back     alignment and structure
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A Back     alignment and structure
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} Back     alignment and structure
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A Back     alignment and structure
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* Back     alignment and structure
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A Back     alignment and structure
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* Back     alignment and structure
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} Back     alignment and structure
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A Back     alignment and structure
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} Back     alignment and structure
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Back     alignment and structure
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* Back     alignment and structure
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A Back     alignment and structure
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 Back     alignment and structure
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} Back     alignment and structure
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... Back     alignment and structure
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} Back     alignment and structure
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} Back     alignment and structure
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} Back     alignment and structure
>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} Back     alignment and structure
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} Back     alignment and structure
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} Back     alignment and structure
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A Back     alignment and structure
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 547
d1teda_372 c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacte 2e-47
d1u0ma1200 c.95.1.2 (A:2-201) Putative polyketide synthase SC 6e-30
d1u0ma2148 c.95.1.2 (A:202-349) Putative polyketide synthase 3e-21
d1bi5a1235 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Med 2e-20
d1ee0a2160 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcon 2e-20
d1bi5a2154 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (M 5e-18
d1u0ua2156 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {S 1e-17
d1u6ea2148 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (Fa 1e-12
d1ub7a2149 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (Fa 3e-12
d1mzja2153 c.95.1.2 (A:184-336) Priming beta-ketosynthase fro 2e-11
d1hnja2143 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (Fa 1e-10
d1xpma1166 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA 0.004
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 372 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Polyketide synthase PKS18
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  167 bits (423), Expect = 2e-47
 Identities = 64/352 (18%), Positives = 121/352 (34%), Gaps = 39/352 (11%)

Query: 178 KKILERSG-------LGDSTYLPEAVLNIPPNPSMKEARKEAEAVMFG--AIDELFAKTS 228
            ++ ++S        +       +     P     +       AV           A   
Sbjct: 49  PRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFYEHAVPLAVDVSKRALAGLP 108

Query: 229 VKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLL 288
            +  +IG+L++  S     P +   ++    L  +I    +  MGC+A + ++  A N +
Sbjct: 109 YRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYV 168

Query: 289 QVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVH 348
           + HP   ALV+ +E  ++N  F +D + +V + LF  G AA+++       +    ++V 
Sbjct: 169 RAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVV 228

Query: 349 TVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQL 408
                +  D+           +   +   LS+NL       +   +T             
Sbjct: 229 RSSFSQLLDN--TEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTE------------ 274

Query: 409 LFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT 468
                              I D       + IH GG  ++++  ++L +S      S   
Sbjct: 275 -----------MLWDNGLQISDID----LWAIHPGGPKIIEQSVRSLGISAELAAQSWDV 319

Query: 469 LYRFGNTSSSSLWYELAYSEAKGRIKKG-DRTWQIAFGSGFKCNSAVWKALR 519
           L RFGN  S SL + L     +    K        AFG G      ++  +R
Sbjct: 320 LARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 371
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} Length = 200 Back     information, alignment and structure
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} Length = 148 Back     information, alignment and structure
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 235 Back     information, alignment and structure
>d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]} Length = 160 Back     information, alignment and structure
>d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 154 Back     information, alignment and structure
>d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]} Length = 156 Back     information, alignment and structure
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 Back     information, alignment and structure
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} Length = 149 Back     information, alignment and structure
>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} Length = 153 Back     information, alignment and structure
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} Length = 143 Back     information, alignment and structure
>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 166 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
d1teda_372 Polyketide synthase PKS18 {Mycobacterium tuberculo 100.0
d1u0ma1200 Putative polyketide synthase SCO1206 {Streptomyces 100.0
d1u6ea1184 Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu 99.98
d1hnja1174 Ketoacyl-ACP synthase III (FabH) {Escherichia coli 99.97
d1bi5a1235 Chalcone synthase {Alfalfa (Medicago sativa) [TaxI 99.97
d1mzja1181 Priming beta-ketosynthase from the r1128 polyketid 99.97
d1ub7a1172 Ketoacyl-ACP synthase III (FabH) {Thermus thermoph 99.97
d1xpma1166 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap 99.95
d1hnja2143 Ketoacyl-ACP synthase III (FabH) {Escherichia coli 99.87
d1ub7a2149 Ketoacyl-ACP synthase III (FabH) {Thermus thermoph 99.86
d1u0ua2156 Dihydropinosylvin synthase {Scots pine (Pinus sylv 99.85
d1mzja2153 Priming beta-ketosynthase from the r1128 polyketid 99.85
d1u6ea2148 Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu 99.85
d1ee0a2160 Pyrone synthase (PyS, chalcone synthase 2) {Gerber 99.85
d1bi5a2154 Chalcone synthase {Alfalfa (Medicago sativa) [TaxI 99.84
d1u0ma2148 Putative polyketide synthase SCO1206 {Streptomyces 99.84
d1j3na1249 Beta-ketoacyl-ACP synthase II {Thermus thermophilu 98.92
d1ulqa1273 Beta-ketoadipyl CoA thiolase {Thermus thermophilus 98.81
d1m3ka1268 Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 98.77
d2gfva1250 Beta-ketoacyl-ACP synthase II {Escherichia coli [T 98.77
d1ox0a1256 Beta-ketoacyl-ACP synthase II {Streptococcus pneum 98.76
d1e5ma1250 Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ 98.66
d1xpma2221 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap 98.64
d1wdkc1262 Fatty oxidation complex beta subunit (3-ketoacyl-C 98.63
d1tqya1216 Actinorhodin polyketide putative beta-ketoacyl syn 98.37
d1afwa1269 Thiolase {Baker's yeast (Saccharomyces cerevisiae) 98.33
d2ix4a1270 Beta-ketoacyl-ACP synthase II {Thale cress (Arabid 98.32
d2vbaa1253 Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta 98.14
d1tqyb1208 Actinorhodin polyketide putative beta-ketoacyl syn 98.07
d1u6ea2148 Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu 96.59
d1ub7a2149 Ketoacyl-ACP synthase III (FabH) {Thermus thermoph 96.05
d1mzja2153 Priming beta-ketosynthase from the r1128 polyketid 95.5
d1hnja2143 Ketoacyl-ACP synthase III (FabH) {Escherichia coli 95.18
d1m3ka2124 Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 92.15
d1u0ma2148 Putative polyketide synthase SCO1206 {Streptomyces 90.65
d1ulqa2125 Beta-ketoadipyl CoA thiolase {Thermus thermophilus 88.5
d1tqyb2194 Actinorhodin polyketide putative beta-ketoacyl syn 87.36
d1teda_372 Polyketide synthase PKS18 {Mycobacterium tuberculo 87.23
d1afwa2124 Thiolase {Baker's yeast (Saccharomyces cerevisiae) 85.35
d1wdkc2128 Fatty oxidation complex beta subunit (3-ketoacyl-C 83.13
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Polyketide synthase PKS18
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.8e-52  Score=434.15  Aligned_cols=349  Identities=18%  Similarity=0.219  Sum_probs=262.9

Q ss_pred             CeEEEEEeEEcCCCCceecHHHHHHHhhhcCCCChHhHHHHHHHHHHhCCceEEecCCccc-------CCCCC--cchHH
Q 008975          137 PVYLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVL-------NIPPN--PSMKE  207 (547)
Q Consensus       137 ~v~Iv~~g~y~P~~~~~vt~e~~~e~~~~~~~~~~~~~~f~~rI~~~sGI~er~~~~~~~~-------~~~~~--~~ma~  207 (547)
                      ..+|.++|+|+|+  ++|+|+|+.+.++.... ++++.+.+.||++++||++||++.+...       ..++.  ..++.
T Consensus        11 ~a~I~g~g~~~P~--~~v~n~e~~~~~~~~~~-~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~   87 (372)
T d1teda_          11 VAVIEGLATGTPR--RVVNQSDAADRVAELFL-DPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHL   87 (372)
T ss_dssp             EEEEEEEEEECCS--CEEEHHHHHHHHHTC-----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHH
T ss_pred             eEEEEEEEEeCCC--eEEcHHHHHHHHHhhcC-ChHHHHHHHHHHHccCCcccceeccccccchhhhhhcCCCHHHHHHH
Confidence            3789999999999  99999999998865322 3344556688999999999998754321       01111  12445


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCccEEEEeccCCCCCCChHHHHHHHcCCCCceeEEEecCccchHHHHHHHHHHHH
Q 008975          208 ARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNL  287 (547)
Q Consensus       208 ~r~ea~~l~~~Aa~~aL~kagi~p~dID~LIv~~s~~~~~Psla~~I~~~lGl~~~~~~fdL~gmgCsggl~AL~lA~~l  287 (547)
                      +.+++.+|+.+|+++||+++|++|+|||+||++|++++..|+++++|+++||+++++..++++++||+|++.||++|.++
T Consensus        88 ~~e~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~  167 (372)
T d1teda_          88 FYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNY  167 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCchHHHHHHhhhccCCceeEeeccccCccHHHHHHHHHHHH
Confidence            67889999999999999999999999999999987788999999999999999988999999888999999999999999


Q ss_pred             HhcCCCCeEEEEEEccccCcccCCCCccccccccccccceEEEEEeccCCCccc--ccceeeeEEEeeecCCCCccccee
Q 008975          288 LQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRR--SKYRLVHTVRTHKGADDNCFACVT  365 (547)
Q Consensus       288 L~sg~~~~aLVVstE~~S~~~~~~~dr~~lv~~~lFGDGAAAvLLs~~~~~~~~--a~~~L~~~v~t~~~sd~~~~~~v~  365 (547)
                      +++++.++||||++|.+|.++...++....++.++|||||+|+||++++.....  ..+.+..... +...+.  .+...
T Consensus       168 l~sg~~~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~  244 (372)
T d1teda_         168 VRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFS-QLLDNT--EDGIV  244 (372)
T ss_dssp             HHHSTTCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEE-EECTTC--TTSEE
T ss_pred             HhcCCCccceeeeehhhcccccCCCcchhhhhhhhhcccceeEEeccCCcccccCCceeEEecccc-cccCCC--ccccc
Confidence            999999999999999998866555555555567899999999999987653221  1122222111 111111  11111


Q ss_pred             eccCCCCccccccchhhHHHhhhhhhccccccCCCcccchhhHHHHHHHHHHHHHHhhhccccccccccccEEEeccCCH
Q 008975          366 QEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGR  445 (547)
Q Consensus       366 ~~ed~~G~~g~~Lskdl~~v~g~~lk~ni~~lgp~vlP~se~~~~~~~~~~r~v~~~a~~~~ip~~~~did~f~~H~~gr  445 (547)
                      .+.+ ++..-+..+++++....+.                          ..++++..++. .+...+|||+|++||+|+
T Consensus       245 ~~~~-~~~~~~~~~~~~~~~~~~~--------------------------~~~~i~~~L~~-~gl~~~did~~i~Hq~~~  296 (372)
T d1teda_         245 LGVN-HNGITCELSENLPGYIFSG--------------------------VAPVVTEMLWD-NGLQISDIDLWAIHPGGP  296 (372)
T ss_dssp             EEEE-TTEEEEEECTTHHHHHHHH--------------------------HHHHHHHHHHH-TTCCGGGCSCEEECCSCH
T ss_pred             cCCC-CCcceeechHHHHHHHHHH--------------------------HHHHHHHHHHh-cCCCHHHhhhhhccCccH
Confidence            1111 1112222333333322111                          11222222222 233368999999999999


Q ss_pred             HHHHHHHHHcCCCcccccccccccccccccccchHHHHHHHHHHcCCCCCC-CEEEEEEecchhhheeEEEEEec
Q 008975          446 AVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKG-DRTWQIAFGSGFKCNSAVWKALR  519 (547)
Q Consensus       446 ~vl~~v~k~LgL~~e~~e~S~~tl~r~GNtsSaSi~~~La~~~~~gri~~G-DrVlliafGsG~~~~sav~r~~~  519 (547)
                      ++++.+++.||++++++..|+.++.+||||+|+|+|+.|+++.++|++++| |++++++||+|++|++++||+++
T Consensus       297 ~i~~~i~~~Lgl~~ek~~~s~~~l~~~GN~~sasip~~L~~~l~~g~~~~g~d~vll~~fG~G~s~~~~ll~~~~  371 (372)
T d1teda_         297 KIIEQSVRSLGISAELAAQSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR  371 (372)
T ss_dssp             HHHHHHHHHHTCCGGGGHHHHHHHHHHCBCTHHHHHHHHHHHHHSCSSSSSSEEEEEEEEETTTEEEEEEEEECC
T ss_pred             HHHHHHHHHcCCCHHHhhhhHHHHhccCCcHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEcHHHhHHHHhheeec
Confidence            999999999999999998778889999999999999999999999998776 89999999999999999999986
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} Back     information, alignment and structure
>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]} Back     information, alignment and structure
>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} Back     information, alignment and structure
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]} Back     information, alignment and structure
>d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} Back     information, alignment and structure
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure
>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Back     information, alignment and structure
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} Back     information, alignment and structure
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} Back     information, alignment and structure
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure