Citrus Sinensis ID: 009004

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------

MLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAEINAEPME

cccccEEEEEEcccccccHHHHHHHHHccccccEEEcccccccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHcccccEEccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHccccccEEEccccccccccccccccHHHHHHHHccccccccccccccEEcccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHcccccccEEEcccccccHHHHHHHHHcccccccEEEccccccccHHHHHHHHcccccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccccccccccEEEccccccccHHHHHHHHccccccccEEEccccccHHHHHHHHHHcccEEEEEcccccccccccccccccccccccHHHHHHHHHccccccccHHHHHcccccccccc

cccccHHEEEccccccccHHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHHHcccHcHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccHEEEEcccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHHHHccccccEEEcHccccccccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHcccccEEEEcccccccHHHHHHHHHcccccccEEEccccccccHHHHHHHHcccccccccEEEccccccccHHHHHHHHHHcccccEEEcccccHccHHHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHHHcccHHccEEEccccccHHHHHHHHHccccEEEEEccccccccccccccccEEcccHHHHHHHHHHHccccccccHHHHHHHHccccccc

MLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGsvaekrgrsihISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTEllspnvephqspnqirpsilpgiQKLCLSVDYITDAMVGTISQGLVslthldlrdapliepritfdltnsglqqinqhgkLKHLSLIRSQEFLITYFRRVNDLGILLMADKCasmesiclggfcrvtdtgFKTILHSCSNLYKLRvshgtqltdlVFHDISATSLSLTHVCLRWCNLLTNHAIKslasntgikvldlrdcknlGDEALRAISSLPQLKILlldgsdisdvgVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDgtsklqlqeldlsnlphlsdngiltlatcrvpiselrvrqcpligdTSVIALASMLvdddrwygssirlldlyncggiTQLAFRWlkkpyfprlrwlgvtgsvNRDILDALArsrpflnvacrgeelgvdqwdnsdgmymhdydEVDELEQWLMegedesdndeeMANAeinaepme

MLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKslasntgikvlDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFlnvacrgeelgvdqwdnsdGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAeinaepme

*****LHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLS*************PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWL************************

*LRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGED*******************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		547	2.2.26 [Sep-21-2011]
Q9SDA8		656	F-box/LRR-repeat protein	yes	no	0.965	0.804	0.619	0.0
Q9ZWC6		607	F-box protein At-B OS=Ara	no	no	0.904	0.815	0.360	5e-71
Q5R3Z8		423	F-box/LRR-repeat protein	yes	no	0.455	0.588	0.286	2e-14
Q9UKC9		423	F-box/LRR-repeat protein	yes	no	0.455	0.588	0.286	2e-14
A1A5X2		489	F-box/LRR-repeat protein	yes	no	0.458	0.513	0.266	2e-14
Q8BH16		423	F-box/LRR-repeat protein	yes	no	0.393	0.508	0.298	1e-13
A6H779		423	F-box/LRR-repeat protein	yes	no	0.455	0.588	0.271	1e-12
C8V4D4		585	SCF E3 ubiquitin ligase c	yes	no	0.519	0.485	0.243	1e-12
Q5BJ29		491	F-box/LRR-repeat protein	no	no	0.458	0.511	0.25	2e-12
Q9CZV8		436	F-box/LRR-repeat protein	no	no	0.438	0.550	0.267	1e-11

>sp\|Q9SDA8\|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1	Back alignment and function desciption

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/533 (61%), Positives = 415/533 (77%), Gaps = 5/533 (0%)

Query: 1   MLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGC 60
           ++RP+L E+ LHNC DFSG L+SEIG KCKDLR L LGSVAEK GRSI    LE+LLNGC
Sbjct: 107 LVRPSLREISLHNCRDFSGDLISEIGRKCKDLRLLCLGSVAEKVGRSISRCALEDLLNGC 166

Query: 61  PQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQ 120
             LE L LMFD+SL+LR    R++ L S++LT LE+G+I+S M+T+LL+      Q  N+
Sbjct: 167 SHLEVLALMFDLSLYLRPGDGRIFGLVSDRLTHLELGHITSRMMTQLLTSTEISGQDSNR 226

Query: 121 IRPS-ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQ 179
           +  S +L  +Q+L LSVD ITDA+V  IS+ L SL  LD+RDAPL +PR   DLT+ GL 
Sbjct: 227 VTTSTVLQNVQRLRLSVDCITDAVVKAISKSLPSLIDLDIRDAPLEDPRQVSDLTDFGLH 286

Query: 180 QINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKT 239
           +INQ+GKLKHLSLIRSQEF  TYFRRV+D G+L +ADKC  ME+ICLGGFCRVTD GFKT
Sbjct: 287 EINQNGKLKHLSLIRSQEFHPTYFRRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKT 346

Query: 240 ILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 299
           ILHSC++L K  + HG +LTDLVFHDI AT+LSL+HV LR C+LLT+HAI+ LAS+  ++
Sbjct: 347 ILHSCASLSKFSIYHGPKLTDLVFHDILATTLSLSHVSLRRCHLLTDHAIQKLASSLKLE 406

Query: 300 VLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKR 359
            LDLR C+NL DE L A+S LP+LK+LLLDG+DISD G+SYL+  V+ SLV LS+RGC+ 
Sbjct: 407 NLDLRGCRNLRDETLTAVSHLPKLKVLLLDGADISDTGLSYLKEGVLDSLVSLSVRGCRN 466

Query: 360 LTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSV 419
           LTDK +S LFDG+SKL L+ELDLSNLP+L+D  I  LA    PI++L++R+C LIGD SV
Sbjct: 467 LTDKFMSTLFDGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASV 526

Query: 420 IALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILD 479
           +ALAS  V +D   GSS+ LLDLY+CGGITQL+F+WLKKP+FPRL+WLG+TGSVNRDI+D
Sbjct: 527 MALASTRVYEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGITGSVNRDIVD 586

Query: 480 ALARSRPFLNVACRGEELG---VDQWDNSDGMYMHDYDEVDELEQWLMEGEDE 529
           ALAR RP L V+CRGEELG    D WD++D ++ H   + DELEQW++  E +
Sbjct: 587 ALARRRPHLQVSCRGEELGNDGEDDWDSAD-IHQHIEAQEDELEQWILGDEGD 638

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9ZWC6\|ATB_ARATH F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1	Back alignment and function description

>sp\|Q5R3Z8\|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q9UKC9\|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	Back alignment and function description

>sp\|A1A5X2\|FBXL7_DANRE F-box/LRR-repeat protein 7 OS=Danio rerio GN=fbxl7 PE=2 SV=1	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

>sp\|A6H779\|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|C8V4D4\|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1	Back alignment and function description

>sp\|Q5BJ29\|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1	Back alignment and function description

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		547
255577864		643	ubiquitin-protein ligase, putative [Rici	0.989	0.841	0.828	0.0
224080674		643	predicted protein [Populus trichocarpa]	0.937	0.797	0.828	0.0
356575440		637	PREDICTED: F-box/LRR-repeat protein 10-l	0.990	0.850	0.779	0.0
357444831		643	F-box/LRR-repeat protein [Medicago trunc	0.998	0.849	0.78	0.0
224103131		644	f-box family protein [Populus trichocarp	0.943	0.801	0.827	0.0
359474824		719	PREDICTED: F-box/LRR-repeat protein 10-l	0.956	0.727	0.787	0.0
359474995		640	PREDICTED: F-box/LRR-repeat protein 10-l	0.956	0.817	0.780	0.0
449454247		637	PREDICTED: F-box/LRR-repeat protein 10-l	0.957	0.822	0.740	0.0
449508806		637	PREDICTED: LOW QUALITY PROTEIN: F-box/LR	0.957	0.822	0.738	0.0
242037027		640	hypothetical protein SORBIDRAFT_01g04796	0.976	0.834	0.616	0.0

>gi\|255577864\|ref\|XP_002529805.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223530716\|gb\|EEF32587.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/542 (82%), Positives = 497/542 (91%), Gaps = 1/542 (0%)

Query: 1   MLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGC 60
           ++RP+L ELCL NCADFSGKLLSEIG KC +LR LY+GSVAEKRGR IHISDLEELL GC
Sbjct: 100 LIRPSLQELCLLNCADFSGKLLSEIGSKCGNLRYLYVGSVAEKRGRPIHISDLEELLTGC 159

Query: 61  PQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQ 120
            QLEAL LMFD+SLFLRHNF RVWALASEKLTSLEIGYISSVMVTELL+P+V PHQS N 
Sbjct: 160 TQLEALTLMFDVSLFLRHNFTRVWALASEKLTSLEIGYISSVMVTELLTPSVGPHQSLNH 219

Query: 121 IRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQ 180
           IRPSILPGIQKL LSVDYITD MVGTIS+GL+ LTHLDLRD PLIEPRITFDLTNSGLQQ
Sbjct: 220 IRPSILPGIQKLSLSVDYITDTMVGTISKGLMFLTHLDLRDTPLIEPRITFDLTNSGLQQ 279

Query: 181 INQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTI 240
           INQ+GKL+HLSL RSQEF+ITYFRRVNDLGILLMAD CASMESICLGGFC+VTDTGFKTI
Sbjct: 280 INQYGKLRHLSLFRSQEFVITYFRRVNDLGILLMADNCASMESICLGGFCQVTDTGFKTI 339

Query: 241 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKV 300
           LHSCS+L++LRVS G  LTDLVFHD+SATSL L+HVCLRWCNLLTN+AIK+L +NT +KV
Sbjct: 340 LHSCSSLHRLRVSRGIHLTDLVFHDMSATSLCLSHVCLRWCNLLTNYAIKNLVANTHLKV 399

Query: 301 LDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL 360
           LDLRDCKNLGDE+LRAIS+L +LKILLLDGS ISD G+S LR  VI+SLV LS+RGCKRL
Sbjct: 400 LDLRDCKNLGDESLRAISTLFELKILLLDGSGISDSGLSNLRGRVISSLVSLSVRGCKRL 459

Query: 361 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVI 420
           TDKCISALF+G SKL+LQELD+SNLP+LSDNGIL LA  R+PIS LR+RQCPLIGDTSV+
Sbjct: 460 TDKCISALFEGASKLELQELDISNLPNLSDNGILCLAKSRLPISALRMRQCPLIGDTSVM 519

Query: 421 ALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDA 480
           ALASM VD+DR +GSS+RLLD+YNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDI+DA
Sbjct: 520 ALASMQVDEDRGHGSSLRLLDIYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDIIDA 579

Query: 481 LARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAE 540
           LAR+RPFL+VAC  EELG+DQWDNSD +YMHDYDEVDELEQWL+EGE E +NDEEM +AE
Sbjct: 580 LARNRPFLHVACHAEELGIDQWDNSDSLYMHDYDEVDELEQWLLEGEFE-NNDEEMVDAE 638

Query: 541 IN 542
           IN
Sbjct: 639 IN 640

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224080674\|ref\|XP_002306206.1\| predicted protein [Populus trichocarpa] gi\|222849170\|gb\|EEE86717.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356575440\|ref\|XP_003555849.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Glycine max]	Back alignment and taxonomy information

>gi\|357444831\|ref\|XP_003592693.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|358345302\|ref\|XP_003636720.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|355481741\|gb\|AES62944.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|355502655\|gb\|AES83858.1\| F-box/LRR-repeat protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224103131\|ref\|XP_002312937.1\| f-box family protein [Populus trichocarpa] gi\|222849345\|gb\|EEE86892.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359474824\|ref\|XP_003631537.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359474995\|ref\|XP_003631565.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449454247\|ref\|XP_004144867.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449508806\|ref\|XP_004163416.1\| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|242037027\|ref\|XP_002465908.1\| hypothetical protein SORBIDRAFT_01g047960 [Sorghum bicolor] gi\|241919762\|gb\|EER92906.1\| hypothetical protein SORBIDRAFT_01g047960 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		547
TAIR\|locus:2827644		656	AT2G17020 "AT2G17020" [Arabido	0.985	0.821	0.614	6.2e-172
TAIR\|locus:2020477		607	AT1G55590 [Arabidopsis thalian	0.906	0.817	0.366	7.7e-71
RGD\|1562243		422	Fbxl2 "F-box and leucine-rich	0.391	0.507	0.315	8.4e-17
MGI\|MGI:1919429		423	Fbxl2 "F-box and leucine-rich	0.391	0.505	0.310	1.1e-16
UNIPROTKB\|Q9UKC9		423	FBXL2 "F-box/LRR-repeat protei	0.391	0.505	0.315	1.1e-16
UNIPROTKB\|Q5R3Z8		423	FBXL2 "F-box/LRR-repeat protei	0.391	0.505	0.315	1.1e-16
UNIPROTKB\|F1PWK1		422	FBXL2 "Uncharacterized protein	0.391	0.507	0.310	1.8e-16
UNIPROTKB\|F1NHD2		423	FBXL2 "Uncharacterized protein	0.391	0.505	0.301	1.9e-16
ASPGD\|ASPL0000017608		585	grrA [Emericella nidulans (tax	0.694	0.649	0.246	2.8e-15
UNIPROTKB\|A6H779		423	FBXL2 "F-box/LRR-repeat protei	0.391	0.505	0.297	9.4e-15

TAIR\|locus:2827644 AT2G17020 "AT2G17020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1671 (593.3 bits), Expect = 6.2e-172, P = 6.2e-172
 Identities = 338/550 (61%), Positives = 423/550 (76%)

Query:     1 MLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGC 60
             ++RP+L E+ LHNC DFSG L+SEIG KCKDLR L LGSVAEK GRSI    LE+LLNGC
Sbjct:   107 LVRPSLREISLHNCRDFSGDLISEIGRKCKDLRLLCLGSVAEKVGRSISRCALEDLLNGC 166

Query:    61 PQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQ 120
               LE L LMFD+SL+LR    R++ L S++LT LE+G+I+S M+T+LL+      Q  N+
Sbjct:   167 SHLEVLALMFDLSLYLRPGDGRIFGLVSDRLTHLELGHITSRMMTQLLTSTEISGQDSNR 226

Query:   121 IRPS-ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQ 179
             +  S +L  +Q+L LSVD ITDA+V  IS+ L SL  LD+RDAPL +PR   DLT+ GL 
Sbjct:   227 VTTSTVLQNVQRLRLSVDCITDAVVKAISKSLPSLIDLDIRDAPLEDPRQVSDLTDFGLH 286

Query:   180 QINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKT 239
             +INQ+GKLKHLSLIRSQEF  TYFRRV+D G+L +ADKC  ME+ICLGGFCRVTD GFKT
Sbjct:   287 EINQNGKLKHLSLIRSQEFHPTYFRRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKT 346

Query:   240 ILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK 299
             ILHSC++L K  + HG +LTDLVFHDI AT+LSL+HV LR C+LLT+HAI+ LAS+  ++
Sbjct:   347 ILHSCASLSKFSIYHGPKLTDLVFHDILATTLSLSHVSLRRCHLLTDHAIQKLASSLKLE 406

Query:   300 VLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKR 359
              LDLR C+NL DE L A+S LP+LK+LLLDG+DISD G+SYL+  V+ SLV LS+RGC+ 
Sbjct:   407 NLDLRGCRNLRDETLTAVSHLPKLKVLLLDGADISDTGLSYLKEGVLDSLVSLSVRGCRN 466

Query:   360 LTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSV 419
             LTDK +S LFDG+SKL L+ELDLSNLP+L+D  I  LA    PI++L++R+C LIGD SV
Sbjct:   467 LTDKFMSTLFDGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASV 526

Query:   420 IALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILD 479
             +ALAS  V +D   GSS+ LLDLY+CGGITQL+F+WLKKP+FPRL+WLG+TGSVNRDI+D
Sbjct:   527 MALASTRVYEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGITGSVNRDIVD 586

Query:   480 ALARSRPFLNVACRGEELG---VDQWDNSDGMYMHDYDEVDELEQWLM--EG----EDES 530
             ALAR RP L V+CRGEELG    D WD++D ++ H   + DELEQW++  EG    ED  
Sbjct:   587 ALARRRPHLQVSCRGEELGNDGEDDWDSAD-IHQHIEAQEDELEQWILGDEGDVEMEDAE 645

Query:   531 DNDEEMANAE 540
             D  EE A+ E
Sbjct:   646 DESEEDASEE 655

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006486 "protein glycosylation" evidence=RCA

TAIR\|locus:2020477 AT1G55590 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

RGD\|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000017608 grrA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SDA8	FBL10_ARATH	No assigned EC number	0.6191	0.9652	0.8048	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		547
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-10
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	9e-06
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	2e-04
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	0.002
cd00116		319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 272 SLTHVCLRWCNLLTNHAIKSLASN-TGIKVLDL---RDCKNLGDEALRAISSL-PQLKIL 326
           +L  + LR C  +T+  I +LA+N   ++ ++L   R+   + D +L A+      L+ +
Sbjct: 79  NLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTV 138

Query: 327 LLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP 386
              G D++D GV  L      SL +LSL  C+ LTD+ I A+        L  L+    P
Sbjct: 139 GFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCP 198

Query: 387 HLSD 390
            ++D
Sbjct: 199 LITD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		547
KOG4341		483	consensus F-box protein containing LRR [General fu	99.95
KOG4341		483	consensus F-box protein containing LRR [General fu	99.95
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.89
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.88
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.66
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.62
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.58
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.57
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.56
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.56
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.55
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.49
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.46
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.46
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.45
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.33
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.3
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.96
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.93
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.92
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.89
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.88
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.8
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.76
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.75
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.73
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.59
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.58
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.51
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.5
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.38
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.31
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.26
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.13
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.1
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.06
KOG4308		478	consensus LRR-containing protein [Function unknown	97.93
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.84
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.81
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.74
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.7
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.69
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.6
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.47
KOG4308		478	consensus LRR-containing protein [Function unknown	97.34
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.13
PRK15386		426	type III secretion protein GogB; Provisional	97.05
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.77
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.74
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.61
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.57
PLN03150		623	hypothetical protein; Provisional	96.57
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.51
PLN03150		623	hypothetical protein; Provisional	96.47
PRK15386		426	type III secretion protein GogB; Provisional	96.4
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	96.27
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.23
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	95.94
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.76
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.7
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.69
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.47
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	95.17
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	94.87
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	94.73
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.71
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.19
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	92.66
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	88.42
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.74
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	87.38
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.51
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.37
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	82.04
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	81.85
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	80.81

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=99.95  E-value=2.5e-28  Score=222.29  Aligned_cols=325  Identities=23%  Similarity=0.336  Sum_probs=261.3

Q ss_pred             hHHHHHHhcC-CCccEEecCCCCCCCCccccccchhhhhhhc-cCCCcceEEcccccccccccccccChHHHHHHHHcCC
Q 009004          142 AMVGTISQGL-VSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCA  219 (547)
Q Consensus       142 ~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  219 (547)
                      ..++.+.+.+ ..|++|.++||        ..+.+..+..+. .||++++|.+        .++..+++..+..+...|+
T Consensus       127 ~VV~~~~~Rcgg~lk~LSlrG~--------r~v~~sslrt~~~~CpnIehL~l--------~gc~~iTd~s~~sla~~C~  190 (483)
T KOG4341|consen  127 GVVENMISRCGGFLKELSLRGC--------RAVGDSSLRTFASNCPNIEHLAL--------YGCKKITDSSLLSLARYCR  190 (483)
T ss_pred             cceehHhhhhcccccccccccc--------ccCCcchhhHHhhhCCchhhhhh--------hcceeccHHHHHHHHHhcc
Confidence            4455555433 47888888887        355555555554 7888888887        5577888888888888888


Q ss_pred             CCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh-cCCCC
Q 009004          220 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGI  298 (547)
Q Consensus       220 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L  298 (547)
                      .|++|++..|..+++..+..+..+|++|++|.++.|+.++..++..+.+.+..++.+...||..+....+.... .++-+
T Consensus       191 ~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i  270 (483)
T KOG4341|consen  191 KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI  270 (483)
T ss_pred             hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence            88888888888888888888888888888888888888888888888888888888888888777766665443 56667


Q ss_pred             CEEeCCCCCCCChHHHHhhh-CCCCccEEEecCc-cCChHhHHHHHHhcCCCccEEEeCCCCCCcHHHHHHHhccCCCCC
Q 009004          299 KVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ  376 (547)
Q Consensus       299 ~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~  376 (547)
                      .++++..|..+++.++..+. .+..|+.|..+++ .+++..+.++.. .+++|+.|.+..|..+++.++..++.+|  +.
T Consensus       271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~rn~--~~  347 (483)
T KOG4341|consen  271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLGRNC--PH  347 (483)
T ss_pred             hccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc-CCCceEEEeccccchhhhhhhhhhhcCC--hh
Confidence            77777788778887766555 6888888888886 788888888888 8899999999999889999999988888  89


Q ss_pred             ccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCCCCHHHHHHh
Q 009004          377 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL  456 (547)
Q Consensus       377 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l  456 (547)
                      |+.+++.+|..+.+..+..++.+|+.|+.|.+++|..+||.++..+.....     ....|+.+.+.+|+.+++..+..+
T Consensus       348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c-----~~~~l~~lEL~n~p~i~d~~Le~l  422 (483)
T KOG4341|consen  348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC-----SLEGLEVLELDNCPLITDATLEHL  422 (483)
T ss_pred             hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc-----cccccceeeecCCCCchHHHHHHH
Confidence            999999998888888888888889999999999998889988887776443     667788899999998888888888


Q ss_pred             hCCCCCCCcEEEeeCCC--CHHHHHHHHhhCCCcEeec
Q 009004          457 KKPYFPRLRWLGVTGSV--NRDILDALARSRPFLNVAC  492 (547)
Q Consensus       457 ~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~l~~~~  492 (547)
                      ..  |++|+.+.+.+|.  ..+.+.++....|++++..
T Consensus       423 ~~--c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  423 SI--CRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hh--CcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            76  8999999999885  5678888888888888654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		547
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-38
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-25
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-24
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	6e-30
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-26
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	5e-20
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-18
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	8e-26
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	8e-24
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-15
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-13
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-16
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-14
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-13
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-12
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-11
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	5e-12
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	7e-10
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-12
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-10
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-10
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-04
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-11
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-10
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-10
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	1e-08
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-08
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-06
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	7e-07
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	4e-05
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	8e-05
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	5e-05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	3e-04
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	6e-04
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

 Score =  147 bits (372), Expect = 3e-38
 Identities = 73/454 (16%), Positives = 143/454 (31%), Gaps = 57/454 (12%)

Query: 4   PTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQL 63
             L  L L  C+ F+   L  I   C+ +++L +    E          L EL      L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM---EESSFSEKDGKWLHELAQHNTSL 194

Query: 64  EALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSV----------MVTELLSPNVE 113
           E L         +        A     L S+++G    +           + E    ++ 
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254

Query: 114 PHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDL 173
                 +   +++   +   L + Y+    +  +      +  LDL  A L         
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE-------- 306

Query: 174 TNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFC--- 230
           T      I +   L+ L               + D G+ ++A  C  ++ + +       
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNV----------IGDRGLEVLAQYCKQLKRLRIERGADEQ 356

Query: 231 -------RVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHV------- 276
                   V+  G   +   C  L  + V + + +T+     I     +L          
Sbjct: 357 GMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDR 415

Query: 277 CLRWCNLLTNHAIKSLASN-TGIKVLDLR-DCKNLGDEALRAISSL-PQLKILLLDGSDI 333
             R  +L  ++ ++SL      ++          L D  L  I    P ++ +LL     
Sbjct: 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475

Query: 334 SDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP-HLSDNG 392
           SD G+         +L KL +RGC   +++ I+A         L+ L +      ++   
Sbjct: 476 SDEGLMEF-SRGCPNLQKLEMRGC-CFSERAIAAAVTKLPS--LRYLWVQGYRASMTGQD 531

Query: 393 ILTLATCRVPISELRVRQCPLIGDTSVIALASML 426
           ++ +A     I  +  R+ P +     I      
Sbjct: 532 LMQMARPYWNIELIPSRRVPEVNQQGEIREMEHP 565

PyMOL of 3ogk

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		547
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.98
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.98
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.97
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.9
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.89
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.89
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.89
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.88
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.87
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.87
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.85
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.84
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.83
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.83
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.83
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.83
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.83
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.82
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.81
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.76
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.75
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.75
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.74
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.74
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.72
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.72
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.71
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.71
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.68
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.67
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.62
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.61
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.61
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.58
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.56
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.55
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.53
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.51
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.5
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.5
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.5
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.48
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.48
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.47
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.47
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.47
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.46
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.46
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.46
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.43
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.43
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.42
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.41
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.39
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.39
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.38
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.37
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.37
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.37
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.36
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.36
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.36
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.32
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.31
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.29
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.27
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.26
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.25
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.21
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.21
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.2
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.17
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.15
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.14
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.14
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.14
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.13
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	99.12
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.09
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.08
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.05
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.04
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.04
3m19_A		251	Variable lymphocyte receptor A diversity region; a	99.03
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.91
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.89
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.83
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.76
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.75
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.74
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.73
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.72
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.71
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.71
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.67
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.64
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.64
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.64
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.64
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.63
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.62
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.62
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.62
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.6
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.58
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.56
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.52
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.52
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.52
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.46
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.46
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	98.42
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	98.37
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.36
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.33
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.25
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	98.21
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	98.16
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.12
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	98.06
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	98.05
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	98.01
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.92
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.86
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.79
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.75
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.74
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.66
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.41
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.41
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	97.3
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.02
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.91
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	96.42
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	93.84
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	93.81

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=6.4e-32  Score=283.10  Aligned_cols=432  Identities=17%  Similarity=0.196  Sum_probs=333.3

Q ss_pred             CcccceeeccCCCCCchH-------------HHHHHHhcCCCCceeecCcchhhcCCccchhhHHHHHhcCCccceeecc
Q 009004            3 RPTLHELCLHNCADFSGK-------------LLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILM   69 (547)
Q Consensus         3 ~~~L~~L~L~~~~~~~~~-------------~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~   69 (547)
                      +|+|++|+|++|..+...             .+..++..+++|++|++++      +.+++..+..+...+++|++|+++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~------~~~~~~~~~~l~~~~~~L~~L~L~  138 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR------MVVTDDCLELIAKSFKNFKVLVLS  138 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEES------CBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeC------cEEcHHHHHHHHHhCCCCcEEeCC
Confidence            688999999998644322             2456677899999999985      457777777777679999999998


Q ss_pred             cccccccchhHHHHHHHhhcccceeeccCcchH-----hhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccC--CChh
Q 009004           70 FDISLFLRHNFARVWALASEKLTSLEIGYISSV-----MVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDY--ITDA  142 (547)
Q Consensus        70 ~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~  142 (547)
                      ++.. +....+..+ ...+++|++|+++.+...     .+..+               ...+++|++|+++.+.  +++.
T Consensus       139 ~~~~-~~~~~l~~~-~~~~~~L~~L~L~~~~i~~~~~~~l~~~---------------~~~~~~L~~L~l~~~~~~~~~~  201 (594)
T 2p1m_B          139 SCEG-FSTDGLAAI-AATCRNLKELDLRESDVDDVSGHWLSHF---------------PDTYTSLVSLNISCLASEVSFS  201 (594)
T ss_dssp             SCEE-EEHHHHHHH-HHHCTTCCEEECTTCEEECCCGGGGGGS---------------CTTCCCCCEEECTTCCSCCCHH
T ss_pred             CcCC-CCHHHHHHH-HHhCCCCCEEeCcCCccCCcchHHHHHH---------------hhcCCcCcEEEecccCCcCCHH
Confidence            6532 333334444 234589999999865411     12222               4468999999999764  7788


Q ss_pred             HHHHHHhcCCCccEEecCCCCCCCCccccccchhhhhhhccCCCcceEEcccccccccccccccChHH---HHHHHHcCC
Q 009004          143 MVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLG---ILLMADKCA  219 (547)
Q Consensus       143 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~l~~~~~  219 (547)
                      .+..+...+++|++|++++|.        .++. ....+..+++|++|++..+..       .+....   +......|+
T Consensus       202 ~l~~l~~~~~~L~~L~L~~~~--------~~~~-l~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~l~~~l~~~~  265 (594)
T 2p1m_B          202 ALERLVTRCPNLKSLKLNRAV--------PLEK-LATLLQRAPQLEELGTGGYTA-------EVRPDVYSGLSVALSGCK  265 (594)
T ss_dssp             HHHHHHHHCTTCCEEECCTTS--------CHHH-HHHHHHHCTTCSEEECSBCCC-------CCCHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHhCCCCcEEecCCCC--------cHHH-HHHHHhcCCcceEcccccccC-------ccchhhHHHHHHHHhcCC
Confidence            888888889999999999972        2222 222345899999999853211       122222   222346789


Q ss_pred             CCcEEEEcCCCCCCHHHHHHHHHcCCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEccCCCCCCHHHHHHhh-cCCCC
Q 009004          220 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGI  298 (547)
Q Consensus       220 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L  298 (547)
                      +|+.|.  +........+..+...+++|++|++++|. +++..+..+...+++|++|++.+|  +.+.++..+. .+++|
T Consensus       266 ~L~~Ls--~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L  340 (594)
T 2p1m_B          266 ELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDL  340 (594)
T ss_dssp             TCCEEE--CCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTC
T ss_pred             Cccccc--CCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCC
Confidence            999983  22334445566666678999999999987 898888888889999999999996  5566665554 58999


Q ss_pred             CEEeC--------CCCCCCChHHHHhhh-CCCCccEEEecCccCChHhHHHHHHhcCCCccEEEeC-----CCCCCc---
Q 009004          299 KVLDL--------RDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR-----GCKRLT---  361 (547)
Q Consensus       299 ~~L~l--------~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~~L~~L~l~-----~~~~~~---  361 (547)
                      +.|++        ..+..+++.++..+. .+++|++|.+..+.+++.++..+.. .+++|+.|+++     +|..++   
T Consensus       341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCc
Confidence            99999        345578888887776 5999999988888999999888876 69999999999     677888   


Q ss_pred             -HHHHHHHhccCCCCCccEEecCCCCCCCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEE
Q 009004          362 -DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLL  440 (547)
Q Consensus       362 -~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L  440 (547)
                       +.++..++..+  ++|+.|++++  .+++.++..+...+++|+.|++++| .+++.++..++.        .+++|+.|
T Consensus       420 ~~~~~~~l~~~~--~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~--------~~~~L~~L  486 (594)
T 2p1m_B          420 LDIGFGAIVEHC--KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLS--------GCDSLRKL  486 (594)
T ss_dssp             THHHHHHHHHHC--TTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHH--------HCTTCCEE
T ss_pred             hhhHHHHHHhhC--CCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHh--------cCCCcCEE
Confidence             78888777766  8999999976  7899999988878999999999999 699999998876        88999999


Q ss_pred             ecCCCCCCCHHHHHHhhCCCCCCCcEEEeeCCC-CHHHHHHHHhhCCCcEeeccC
Q 009004          441 DLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV-NRDILDALARSRPFLNVACRG  494 (547)
Q Consensus       441 ~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~~  494 (547)
                      +|++|+ +++.++..+.. .+|+|+.|++++|+ ....++.+....|.+++....
T Consensus       487 ~L~~n~-~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          487 EIRDCP-FGDKALLANAS-KLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             EEESCS-CCHHHHHHTGG-GGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred             ECcCCC-CcHHHHHHHHH-hCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence            999998 79888876765 68999999999997 466788888889999876543

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		547
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 21/246 (8%)

Query: 265 DISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 324
           D++   LS   +  R      +  +    S   ++ +DL +           +S   +L+
Sbjct: 15  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74

Query: 325 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL------- 377
            L L+G  +SD  V+ L     ++LV+L+L GC   ++  +  L    S+L         
Sbjct: 75  NLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132

Query: 378 ----------QELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 427
                            +  L+ +G           + +R     +  D S   +     
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192

Query: 428 DDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPF 487
             + +  + ++ L L  C  I       L +   P L+ L V G V    L  L  + P 
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGE--IPTLKTLQVFGIVPDGTLQLLKEALPH 250

Query: 488 LNVACR 493
           L + C 
Sbjct: 251 LQINCS 256

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		547
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.9
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.9
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.89
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.84
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.69
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.68
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.59
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.49
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.23
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.18
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.15
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.15
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.12
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.12
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.11
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.03
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.02
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.97
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.9
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.83
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.75
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.73
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.72
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.67
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.66
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.58
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.58
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.57
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.52
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.49
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.48
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.43
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.41
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.39
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.37
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.24
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.11
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.64
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.23
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.82
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.8

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7e-21  Score=190.15  Aligned_cols=415  Identities=22%  Similarity=0.232  Sum_probs=268.0

Q ss_pred             cccceeeccCCCCCchHHHHHHHhcCCCCceeecCcchhhcCCccchhhH---HHHHhcCCccceeecccccccccchhH
Q 009004            4 PTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDL---EELLNGCPQLEALILMFDISLFLRHNF   80 (547)
Q Consensus         4 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~~~~~~~~L~~L~L~~~~~~~~~~~~   80 (547)
                      ++|++|+|++.. ++..++..++..++++++|+|.+      +.+++.++   ...+..+++|++|+|+++.  +++.++
T Consensus         2 ~~l~~ld~~~~~-i~~~~~~~l~~~l~~l~~L~L~~------~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~--i~~~~~   72 (460)
T d1z7xw1           2 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDD------CGLTEARCKDISSALRVNPALAELNLRSNE--LGDVGV   72 (460)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEES------SCCCHHHHHHHHHHHHTCTTCCEEECTTCC--CHHHHH
T ss_pred             CCCCEEEeeCCc-CChHHHHHHHHhCCCCCEEEeCC------CCCCHHHHHHHHHHHhcCCCCCEEECcCCc--CChHHH
Confidence            579999997664 99999999888999999999996      45776654   4456789999999998653  333333


Q ss_pred             HHHHHHhhcccceeeccCcchHhhhhhcCCCcCCCCCCCccCCCCCCCccEEEeeccCCChhHHHHHHh---cCCCccEE
Q 009004           81 ARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQ---GLVSLTHL  157 (547)
Q Consensus        81 ~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L  157 (547)
                      ..+....                                   .....+|++|+++.+.+++..+..+..   .+++|++|
T Consensus        73 ~~l~~~l-----------------------------------~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L  117 (460)
T d1z7xw1          73 HCVLQGL-----------------------------------QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL  117 (460)
T ss_dssp             HHHHHTT-----------------------------------CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEE
T ss_pred             HHHHHHH-----------------------------------hcCCCCCCEEECCCCCccccccccccchhhcccccccc
Confidence            3331100                                   112356888888877787776665544   56788888


Q ss_pred             ecCCCCCCCCccccccchhhhhhhc-----cCCCcceEEcccccccccccccccChHHHHHHHHcCCCCcEEEEcCCCCC
Q 009004          158 DLRDAPLIEPRITFDLTNSGLQQIN-----QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRV  232 (547)
Q Consensus       158 ~l~~~~~~~~~~~~~~~~~~l~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  232 (547)
                      ++++|         .+++.++..+.     .......+....      ..................+.++.+.++++ ..
T Consensus       118 ~L~~N---------~i~~~~~~~l~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~ls~~-~~  181 (460)
T d1z7xw1         118 HLSDN---------LLGDAGLQLLCEGLLDPQCRLEKLQLEY------CSLSAASCEPLASVLRAKPDFKELTVSNN-DI  181 (460)
T ss_dssp             ECCSS---------BCHHHHHHHHHHHHTSTTCCCCEEECTT------SCCBGGGHHHHHHHHHHCTTCCEEECCSS-BC
T ss_pred             ccccc---------cchhhhhhhhhhcccccccccccccccc------cccchhhhccccccccccccccccccccc-cc
Confidence            88886         34444443332     112222333311      00111111122223345678888888874 45


Q ss_pred             CHHHHHHHH----HcCCCCcEEEecCCCCCCHH--HHHHHHhcCCCccEEEccCCCCCCHHHHH-----HhhcCCCCCEE
Q 009004          233 TDTGFKTIL----HSCSNLYKLRVSHGTQLTDL--VFHDISATSLSLTHVCLRWCNLLTNHAIK-----SLASNTGIKVL  301 (547)
Q Consensus       233 ~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~l~~~~~L~~L  301 (547)
                      .+.+...+.    ..-.....+.+..+......  .........+.++.+.+.++ .+......     .......++.+
T Consensus       182 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n-~~~~~~~~~~~~~~~~~~~~l~~l  260 (460)
T d1z7xw1         182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTL  260 (460)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             ccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc-cccccccchhhccccccccccccc
Confidence            544433322    22345677777775433322  22233445678888888884 33333221     12256788999


Q ss_pred             eCCCCCCCChHHHH----hhhCCCCccEEEecCccCChHhHHHHHH---hcCCCccEEEeCCCCCCcHHHHHHHh---cc
Q 009004          302 DLRDCKNLGDEALR----AISSLPQLKILLLDGSDISDVGVSYLRL---TVITSLVKLSLRGCKRLTDKCISALF---DG  371 (547)
Q Consensus       302 ~l~~~~~l~~~~~~----~l~~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~~L~~L~l~~~~~~~~~~~~~l~---~~  371 (547)
                      ++++| .+......    .+...+.++.+++++|.+++.++..+..   ...+.|+.+.++++. +++.++..++   ..
T Consensus       261 ~l~~n-~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l~~~~~~  338 (460)
T d1z7xw1         261 WIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQ  338 (460)
T ss_dssp             ECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHH
T ss_pred             ccccc-cccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc-hhhhhhhhccccccc
Confidence            99887 56655432    3346888999999998888877766643   134578899998874 6665554443   22


Q ss_pred             CCCCCccEEecCCCCCCCHHHHHHHHh----cCCCCcEEeccCCCCCCHHHHHHHHhccccCccccCCCccEEecCCCCC
Q 009004          372 TSKLQLQELDLSNLPHLSDNGILTLAT----CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG  447 (547)
Q Consensus       372 ~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~  447 (547)
                      +  ++|++|++++ +.+++.++..+..    ..+.|++|++++| .+++.++..++..+.     .+++|++|+|++|. 
T Consensus       339 ~--~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~-----~~~~L~~L~Ls~N~-  408 (460)
T d1z7xw1         339 N--RFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLL-----ANHSLRELDLSNNC-  408 (460)
T ss_dssp             C--SSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHH-----HCCCCCEEECCSSS-
T ss_pred             c--cchhhhheee-ecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHh-----cCCCCCEEECCCCc-
Confidence            3  6899999998 5788877766653    3466999999999 799988877766554     67889999999886 


Q ss_pred             CCHHHHHHhhC---CCCCCCcEEEeeCCC-C---HHHHHHHHhhCCCcEee
Q 009004          448 ITQLAFRWLKK---PYFPRLRWLGVTGSV-N---RDILDALARSRPFLNVA  491 (547)
Q Consensus       448 i~~~~~~~l~~---~~~~~L~~L~l~~~~-~---~~~~~~~~~~~~~l~~~  491 (547)
                      +++.++..+..   .....|+.|.+.++. .   .+.++++....|++++.
T Consensus       409 i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            89888776643   123379999998885 2   34555667788888764

PyMOL of d1z7xw1

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure