Citrus Sinensis ID: 009071

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----

MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRYDWLANKSLQAGYFLWAMLAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLRVLWTRGEPERPCPHVHLQHSHELNVEK

ccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEcccccccccccccccccEEEcccccccccccccccccccEEEEEcccccccHHHHHHHHccccEEEEEEccccccccccccccccccEEEEEEEcccHHHHHHHHHHHccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHEEEEEEEEEcccccccccEEEEccccccccccccEEEEEcccccccccEEEEccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHcHHHHHccccccccccccccccccccccccc

ccHHHHHHHHHHHHHHHHHHcccHccccccccccccccccccccccEEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHcccEEEEEEEccccccccccccccccccEEEEEEEEEHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEcHHHccccEEEEEEcccccccccccEEEEEccccccccccEEEccccEEHcHHHHHEHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc

MDFKRLSWVLFPVAVVSLVCypasvtagdivhdddlapkkpgcendfVLVKVQTWidgieneefvgvgarfgttivskeknanqihltlshprdccsmpkhkyagdvimvdrgnckfttKANIAEAAGASALLIINNQKELYkmvcdpdetdldihipavmmpqdagASLEKMLLNTSSVsvqlysprrpvvDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVdeipdakavgVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAgesfikvpffgavshltlAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIvhipnlkvGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARgdksgedgipmllkiprmfdpwggysiigfgdillPGLIIAFSLRYDWLANKSLQAGYFLWAMLAYGLGLLITYVALNLmdghgqpallyIVPFTLGTFLALgkkrgdlrvlwtrgeperpcphvhlqhshelnvek

mdfkrlswVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTlshprdccsmpKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVArgdksgedgiPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRYDWLANKSLQAGYFLWAMLAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLRVLWTRGEperpcphvhlqhshelnvek

****RLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRYDWLANKSLQAGYFLWAMLAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLRVLWTRG*********************

***KRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKM****DETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRYDWLANKSLQAGYFLWAMLAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLRVLWTR**********************

MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIE********************SGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRYDWLANKSLQAGYFLWAMLAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLRVLWTRG*********************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		544	2.2.26 [Sep-21-2011]
Q8W469		540	Signal peptide peptidase-	yes	no	0.946	0.953	0.810	0.0
Q5Z413		542	Signal peptide peptidase-	yes	no	0.931	0.935	0.732	0.0
Q0DWA9		545	Signal peptide peptidase-	no	no	0.933	0.932	0.756	0.0
Q0WMJ8		540	Signal peptide peptidase-	no	no	0.957	0.964	0.719	0.0
Q53P98		534	Signal peptide peptidase-	no	no	0.897	0.913	0.505	1e-148
Q4V3B8		540	Signal peptide peptidase-	no	no	0.926	0.933	0.471	1e-131
Q9MA44		536	Signal peptide peptidase-	no	no	0.919	0.932	0.459	1e-126
Q5N808		523	Signal peptide peptidase-	no	no	0.889	0.925	0.432	1e-114
Q8TCT7		592	Signal peptide peptidase-	yes	no	0.738	0.679	0.343	5e-55
Q5PQL3		577	Signal peptide peptidase-	yes	no	0.744	0.701	0.326	1e-54

>sp\|Q8W469\|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1	Back alignment and function desciption

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/517 (81%), Positives = 471/517 (91%), Gaps = 2/517 (0%)

Query: 24  SVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNAN 83
           +VTAGDIVH D+LAPKKPGCENDFVLVKVQTWIDG+ENEEFVGVGARFG  IVSKEKNAN
Sbjct: 24  TVTAGDIVHQDNLAPKKPGCENDFVLVKVQTWIDGVENEEFVGVGARFGKRIVSKEKNAN 83

Query: 84  QIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYK 143
           Q HL  ++PRD C+  K+K +GDV++V+RGNC+FT KAN AEAAGASALLIINNQKELYK
Sbjct: 84  QTHLVFANPRDSCTPLKNKLSGDVVIVERGNCRFTAKANNAEAAGASALLIINNQKELYK 143

Query: 144 MVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMA 203
           MVC+PDETDLDI IPAVM+PQDAGASL+KML N+S VS QLYSPRRP VDVAEVFLWLMA
Sbjct: 144 MVCEPDETDLDIQIPAVMLPQDAGASLQKMLANSSKVSAQLYSPRRPAVDVAEVFLWLMA 203

Query: 204 VGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVAS 263
           +GTILCASYWSAWSARE AIE +KLLKDA+DEIP+    G SGVV+IN+ SA+ FV++AS
Sbjct: 204 IGTILCASYWSAWSAREAAIEHDKLLKDAIDEIPNTNDGG-SGVVEINSISAIFFVVLAS 262

Query: 264 CFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSH 323
            FLV+LYKLMS WF+ELLV++FCIGGVEGLQTCLVALLSRWF+RA ++++KVPF G +S+
Sbjct: 263 GFLVILYKLMSYWFVELLVVVFCIGGVEGLQTCLVALLSRWFQRAADTYVKVPFLGPISY 322

Query: 324 LTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAF 383
           LTLAV+PFCI FAV+WA+YR  SFAWIGQD+LGIALIITVLQIVH+PNLKVGTVLLSCAF
Sbjct: 323 LTLAVSPFCIVFAVLWAVYRVHSFAWIGQDVLGIALIITVLQIVHVPNLKVGTVLLSCAF 382

Query: 384 MYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLP 443
           +YDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLP
Sbjct: 383 LYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLP 442

Query: 444 GLIIAFSLRYDWLANKSLQAGYFLWAMLAYGLGLLITYVALNLMDGHGQPALLYIVPFTL 503
           GL+IAF+LRYDWLANK+L+ GYF+WAM+AYGLGLLITYVALNLMDGHGQPALLYIVPFTL
Sbjct: 443 GLLIAFALRYDWLANKTLRTGYFIWAMVAYGLGLLITYVALNLMDGHGQPALLYIVPFTL 502

Query: 504 GTFLALGKKRGDLRVLWTRGEPERPCP-HVHLQHSHE 539
           GT L L +KR DL +LWT+GEPER CP HV L+   E
Sbjct: 503 GTMLTLARKRDDLWILWTKGEPERACPHHVRLEQCSE 539

Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp\|Q5Z413\|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1	Back alignment and function description

>sp\|Q0DWA9\|SIPL4_ORYSJ Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1	Back alignment and function description

>sp\|Q0WMJ8\|SIPL4_ARATH Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1	Back alignment and function description

>sp\|Q53P98\|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1	Back alignment and function description

>sp\|Q4V3B8\|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1	Back alignment and function description

>sp\|Q9MA44\|SIPL5_ARATH Signal peptide peptidase-like 5 OS=Arabidopsis thaliana GN=SPPL5 PE=2 SV=1	Back alignment and function description

>sp\|Q5N808\|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1	Back alignment and function description

>sp\|Q8TCT7\|SPP2B_HUMAN Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2	Back alignment and function description

>sp\|Q5PQL3\|SPP2B_RAT Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		544
224071926		541	predicted protein [Populus trichocarpa]	0.994	1.0	0.870	0.0
255537495		542	Minor histocompatibility antigen H13, pu	0.990	0.994	0.859	0.0
359474199		548	PREDICTED: signal peptide peptidase-like	0.998	0.990	0.841	0.0
224058471		541	predicted protein [Populus trichocarpa]	0.994	1.0	0.842	0.0
16118856		537	growth-on protein GRO10 [Euphorbia esula	0.957	0.970	0.858	0.0
449452304		545	PREDICTED: signal peptide peptidase-like	1.0	0.998	0.809	0.0
356539700		543	PREDICTED: signal peptide peptidase-like	0.998	1.0	0.780	0.0
356497238		543	PREDICTED: signal peptide peptidase-like	0.998	1.0	0.769	0.0
18407872		540	signal peptide peptidase-like 2 [Arabido	0.946	0.953	0.810	0.0
42571983		540	signal peptide peptidase-like 2 [Arabido	0.946	0.953	0.808	0.0

>gi\|224071926\|ref\|XP_002303595.1\| predicted protein [Populus trichocarpa] gi\|222841027\|gb\|EEE78574.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  980 bits (2533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/541 (87%), Positives = 508/541 (93%)

Query: 1   MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIE 60
           MD ++L  V+   AV+SLVCYP+SVTAGDIVHDD+LAPKKPGCENDFVLVKVQTW+DG+E
Sbjct: 1   MDLQKLCLVITVTAVISLVCYPSSVTAGDIVHDDNLAPKKPGCENDFVLVKVQTWVDGVE 60

Query: 61  NEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTK 120
           + EFVGVGARFGTTIVSKEKNANQI LTLS P DCCS PKHK  GDVIMV RG+CKFTTK
Sbjct: 61  DAEFVGVGARFGTTIVSKEKNANQIRLTLSDPLDCCSAPKHKLDGDVIMVHRGHCKFTTK 120

Query: 121 ANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSV 180
           AN AEAAGASALLIINNQKELYKMVC+PDETDLDIHIPAVM+PQDAG+SLEKMLL  SSV
Sbjct: 121 ANNAEAAGASALLIINNQKELYKMVCEPDETDLDIHIPAVMLPQDAGSSLEKMLLTNSSV 180

Query: 181 SVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAK 240
           SVQLYSPRRP+VD+AEVFLWLMAVGTILCASYWSAWSARE AIEQ+KLLKDAVDEIP+ K
Sbjct: 181 SVQLYSPRRPLVDIAEVFLWLMAVGTILCASYWSAWSAREAAIEQDKLLKDAVDEIPNEK 240

Query: 241 AVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVAL 300
           AVG S VVDINT SAVLFV++ASCFLV+LYKLMS WF+ELLV+LFCIGGVEGLQTCLVAL
Sbjct: 241 AVGFSTVVDINTTSAVLFVVIASCFLVILYKLMSYWFIELLVVLFCIGGVEGLQTCLVAL 300

Query: 301 LSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALI 360
           LSRWF+ AGES+IKVPFFG +S+LTLAV PFCIAFAVVWA+YR VSFAWIGQDILGIALI
Sbjct: 301 LSRWFKHAGESYIKVPFFGPLSYLTLAVAPFCIAFAVVWAVYRTVSFAWIGQDILGIALI 360

Query: 361 ITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLL 420
           ITVLQIVH+PNLKVGTVLLSCAF+YDIFWVFVSKK+FHESVMIVVARGD+SGEDGIPMLL
Sbjct: 361 ITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKVFHESVMIVVARGDRSGEDGIPMLL 420

Query: 421 KIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRYDWLANKSLQAGYFLWAMLAYGLGLLIT 480
           KIPR+FDPWGGYSIIGFGDILLPGL+IAFSLRYDWLA KSL+AGYF WAMLAYGLGLL+T
Sbjct: 421 KIPRLFDPWGGYSIIGFGDILLPGLLIAFSLRYDWLATKSLRAGYFPWAMLAYGLGLLVT 480

Query: 481 YVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLRVLWTRGEPERPCPHVHLQHSHEL 540
           YVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLRVLWT+GEPE PC HV LQHS EL
Sbjct: 481 YVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLRVLWTQGEPETPCSHVRLQHSEEL 540

Query: 541 N 541
           +
Sbjct: 541 D 541

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255537495\|ref\|XP_002509814.1\| Minor histocompatibility antigen H13, putative [Ricinus communis] gi\|223549713\|gb\|EEF51201.1\| Minor histocompatibility antigen H13, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359474199\|ref\|XP_002274996.2\| PREDICTED: signal peptide peptidase-like 2B-like [Vitis vinifera] gi\|297742511\|emb\|CBI34660.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224058471\|ref\|XP_002299526.1\| predicted protein [Populus trichocarpa] gi\|222846784\|gb\|EEE84331.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|16118856\|gb\|AAL14629.1\|AF417576_1 growth-on protein GRO10 [Euphorbia esula]	Back alignment and taxonomy information

>gi\|449452304\|ref\|XP_004143899.1\| PREDICTED: signal peptide peptidase-like 2-like [Cucumis sativus] gi\|449495775\|ref\|XP_004159941.1\| PREDICTED: signal peptide peptidase-like 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356539700\|ref\|XP_003538333.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

>gi\|356497238\|ref\|XP_003517469.1\| PREDICTED: signal peptide peptidase-like 2B-like [Glycine max]	Back alignment and taxonomy information

>gi|18407872|ref|NP_564815.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] gi|75248730|sp|Q8W469.1|SIPL2_ARATH RecName: Full=Signal peptide peptidase-like 2; Short=AtSPPL2; Flags: Precursor gi|17065462|gb|AAL32885.1| Unknown protein [Arabidopsis thaliana] gi|31711956|gb|AAP68334.1| At1g63690 [Arabidopsis thaliana] gi|332196013|gb|AEE34134.1| signal peptide peptidase-like 2 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|42571983\|ref\|NP_974082.1\| signal peptide peptidase-like 2 [Arabidopsis thaliana] gi\|332196012\|gb\|AEE34133.1\| signal peptide peptidase-like 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		544
TAIR\|locus:2026684		540	SPPL2 "SIGNAL PEPTIDE PEPTIDAS	0.988	0.996	0.783	1e-233
TAIR\|locus:2198155		540	SPPL4 "SIGNAL PEPTIDE PEPTIDAS	0.974	0.981	0.710	1.1e-206
TAIR\|locus:2040971		540	SPPL3 "SIGNAL PEPTIDE PEPTIDAS	0.948	0.955	0.470	2.6e-127
TAIR\|locus:2198733		536	SPPL5 "SIGNAL PEPTIDE PEPTIDAS	0.900	0.914	0.466	1.7e-121
UNIPROTKB\|Q8TCT7		592	SPPL2B "Signal peptide peptida	0.742	0.682	0.340	1.4e-57
UNIPROTKB\|F1S8G9		585	LOC100515648 "Uncharacterized	0.761	0.707	0.332	3.6e-57
UNIPROTKB\|F1Q1B4		580	SPPL2B "Uncharacterized protei	0.746	0.7	0.335	1.6e-56
UNIPROTKB\|J9P0Q5		650	SPPL2B "Uncharacterized protei	0.746	0.624	0.335	1.6e-56
UNIPROTKB\|E1BKF8		583	SPPL2B "Uncharacterized protei	0.777	0.725	0.329	5.3e-56
RGD\|1308556		577	Sppl2b "signal peptide peptida	0.746	0.703	0.327	8.6e-56

TAIR\|locus:2026684 SPPL2 "SIGNAL PEPTIDE PEPTIDASE-LIKE 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2254 (798.5 bits), Expect = 1.0e-233, P = 1.0e-233
 Identities = 423/540 (78%), Positives = 480/540 (88%)

Query:     1 MDFKRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIE 60
             MD  R   +L   + + L+   ++VTAGDIVH D+LAPKKPGCENDFVLVKVQTWIDG+E
Sbjct:     1 MDSLRFLRILLLSSSILLLSLRSTVTAGDIVHQDNLAPKKPGCENDFVLVKVQTWIDGVE 60

Query:    61 NEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTK 120
             NEEFVGVGARFG  IVSKEKNANQ HL  ++PRD C+  K+K +GDV++V+RGNC+FT K
Sbjct:    61 NEEFVGVGARFGKRIVSKEKNANQTHLVFANPRDSCTPLKNKLSGDVVIVERGNCRFTAK 120

Query:   121 ANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSV 180
             AN AEAAGASALLIINNQKELYKMVC+PDETDLDI IPAVM+PQDAGASL+KML N+S V
Sbjct:   121 ANNAEAAGASALLIINNQKELYKMVCEPDETDLDIQIPAVMLPQDAGASLQKMLANSSKV 180

Query:   181 SVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAK 240
             S QLYSPRRP VDVAEVFLWLMA+GTILCASYWSAWSARE AIE +KLLKDA+DEIP+  
Sbjct:   181 SAQLYSPRRPAVDVAEVFLWLMAIGTILCASYWSAWSAREAAIEHDKLLKDAIDEIPNTN 240

Query:   241 AVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVAL 300
               G SGVV+IN+ SA+ FV++AS FLV+LYKLMS WF+ELLV++FCIGGVEGLQTCLVAL
Sbjct:   241 DGG-SGVVEINSISAIFFVVLASGFLVILYKLMSYWFVELLVVVFCIGGVEGLQTCLVAL 299

Query:   301 LSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALI 360
             LSRWF+RA ++++KVPF G +S+LTLAV+PFCI FAV+WA+YR  SFAWIGQD+LGIALI
Sbjct:   300 LSRWFQRAADTYVKVPFLGPISYLTLAVSPFCIVFAVLWAVYRVHSFAWIGQDVLGIALI 359

Query:   361 ITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLL 420
             ITVLQIVH+PNLKVGTVLLSCAF+YDIFWVFVSKKLFHESVMIVV RGDKSGEDGIPMLL
Sbjct:   360 ITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHESVMIVVTRGDKSGEDGIPMLL 419

Query:   421 KIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRYDWLANKSLQAGYFLWAMLAYGLGLLIT 480
             KIPRMFDPWGGYSIIGFGDILLPGL+IAF+LRYDWLANK+L+ GYF+WAM+AYGLGLLIT
Sbjct:   420 KIPRMFDPWGGYSIIGFGDILLPGLLIAFALRYDWLANKTLRTGYFIWAMVAYGLGLLIT 479

Query:   481 YVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLRVLWTRGEPERPCPH-VHLQHSHE 539
             YVALNLMDGHGQPALLYIVPFTLGT L L +KR DL +LWT+GEPER CPH V L+   E
Sbjct:   480 YVALNLMDGHGQPALLYIVPFTLGTMLTLARKRDDLWILWTKGEPERACPHHVRLEQCSE 539

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

TAIR\|locus:2198155 SPPL4 "SIGNAL PEPTIDE PEPTIDASE-LIKE 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TCT7 SPPL2B "Signal peptide peptidase-like 2B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S8G9 LOC100515648 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q1B4 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P0Q5 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BKF8 SPPL2B "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1308556 Sppl2b "signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0DWA9	SIPL4_ORYSJ	3, ., 4, ., 2, 3, ., -	0.7563	0.9338	0.9321	no	no
Q5Z413	SIPL5_ORYSJ	3, ., 4, ., 2, 3, ., -	0.7322	0.9319	0.9354	yes	no
Q8W469	SIPL2_ARATH	3, ., 4, ., 2, 3, ., -	0.8104	0.9466	0.9537	yes	no
Q0WMJ8	SIPL4_ARATH	3, ., 4, ., 2, 3, ., -	0.7194	0.9577	0.9648	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_III1147	hypothetical protein (541 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		544
pfam04258		291	pfam04258, Peptidase_A22B, Signal peptide peptidas	1e-109
smart00730		249	smart00730, PSN, Presenilin, signal peptide peptid	5e-70
cd02132		139	cd02132, PA_GO-like, PA_GO-like: Protease-associat	2e-68
cd00538		126	cd00538, PA, PA: Protease-associated (PA) domain	1e-13
cd04818		118	cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas	5e-13
cd02127		118	cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-	1e-12
pfam02225		96	pfam02225, PA, PA domain	1e-11
cd02125		127	cd02125, PA_VSR, PA_VSR: Protease-associated (PA)	1e-09
cd02123		153	cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a	4e-08
cd04816		122	cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-	1e-06
cd02126		126	cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as	1e-06
cd02129		120	cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as	5e-06
cd04813		117	cd04813, PA_1, PA_1: Protease-associated (PA) doma	2e-05
cd02133		143	cd02133, PA_C5a_like, PA_C5a_like: Protease-associ	2e-05
cd02130		122	cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-as	4e-05
cd02122		138	cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a	1e-04

>gnl\|CDD\|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase	Back alignment and domain information

 Score =  328 bits (842), Expect = e-109
 Identities = 129/290 (44%), Positives = 167/290 (57%), Gaps = 19/290 (6%)

Query: 247 VVDINTASAVLFVLVASCFLVMLYKLMSNWFLE------LLVILFCIGGVEGLQ-TCLVA 299
              I++  A++F + ASC L+ LY    +   E      +L   FCI G   L    L  
Sbjct: 6   TGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAFLILPP 65

Query: 300 LLSRWFRRAGESFIKVP-----FFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDI 354
            + R        F K         G  ++  L     CI FAV W + RK    WI QDI
Sbjct: 66  CIRRLSFMGAYRFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVLRKEH--WILQDI 123

Query: 355 LGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGED 414
           LGIAL I V++I+ +PNLKVGT+LLS  F YDIFWVF+S  +F  SVM+ VA G     +
Sbjct: 124 LGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGPFDAAE 183

Query: 415 GIPMLLKIPRMFD---PWGGYSIIGFGDILLPGLIIAFSLRYDWLANKSLQAGYFLWAML 471
            +PM L  PR+ D    WG +S++G GDI++PGL+IAF LR+D   NKS +  YF+  M+
Sbjct: 184 KLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDISKNKSSR-TYFISTMI 242

Query: 472 AYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLRVLWT 521
           AYGLGLLIT+VALNL     QPALLY+VP TLGT L +   RG+L+ LW 
Sbjct: 243 AYGLGLLITFVALNLFK-AAQPALLYLVPCTLGTLLLVALWRGELKKLWN 291

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291

>gnl\|CDD\|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family	Back alignment and domain information

>gnl\|CDD\|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10	Back alignment and domain information

>gnl\|CDD\|238300 cd00538, PA, PA: Protease-associated (PA) domain	Back alignment and domain information

>gnl\|CDD\|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	Back alignment and domain information

>gnl\|CDD\|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)	Back alignment and domain information

>gnl\|CDD\|216938 pfam02225, PA, PA domain	Back alignment and domain information

>gnl\|CDD\|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)	Back alignment and domain information

>gnl\|CDD\|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like	Back alignment and domain information

>gnl\|CDD\|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)	Back alignment and domain information

>gnl\|CDD\|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins	Back alignment and domain information

>gnl\|CDD\|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like	Back alignment and domain information

>gnl\|CDD\|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1	Back alignment and domain information

>gnl\|CDD\|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase	Back alignment and domain information

>gnl\|CDD\|239045 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)	Back alignment and domain information

>gnl\|CDD\|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		544
KOG2442		541	consensus Uncharacterized conserved protein, conta	100.0
KOG2443		362	consensus Uncharacterized conserved protein [Funct	100.0
PF04258		298	Peptidase_A22B: Signal peptide peptidase; InterPro	100.0
smart00730		249	PSN Presenilin, signal peptide peptidase, family.	100.0
cd02132		139	PA_GO-like PA_GO-like: Protease-associated domain	99.96
cd02129		120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	99.89
cd02126		126	PA_EDEM3_like PA_EDEM3_like: protease associated d	99.87
cd02127		118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	99.85
cd02123		153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	99.84
cd02125		127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	99.84
cd02122		138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	99.84
cd04818		118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	99.79
cd04813		117	PA_1 PA_1: Protease-associated (PA) domain subgrou	99.79
cd04816		122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	99.75
KOG3920		193	consensus Uncharacterized conserved protein, conta	99.72
PF06550		283	DUF1119: Protein of unknown function (DUF1119); In	99.72
cd02130		122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	99.71
cd02124		129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	99.67
cd04817		139	PA_VapT_like PA_VapT_like: Protease-associated dom	99.64
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.62
PF02225		101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	99.49
cd00538		126	PA PA: Protease-associated (PA) domain. The PA dom	99.49
COG3389		277	Uncharacterized protein conserved in archaea [Func	99.45
cd02133		143	PA_C5a_like PA_C5a_like: Protease-associated domai	99.37
cd04819		127	PA_2 PA_2: Protease-associated (PA) domain subgrou	99.31
cd04815		134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	99.25
cd02120		126	PA_subtilisin_like PA_subtilisin_like: Protease-as	99.14
cd02128		183	PA_TfR PA_TfR: Protease-associated domain containi	98.73
cd04822		151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	98.23
cd04814		142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	98.12
cd02121		220	PA_GCPII_like PA_GCPII_like: Protease-associated d	98.08
cd04820		137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	98.07
cd02131		153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	97.87
cd04821		157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	94.31
KOG2736		406	consensus Presenilin [Signal transduction mechanis	94.26
PF01080		403	Presenilin: Presenilin Alzheimer disease; InterPro	92.5

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=8.6e-130  Score=1016.16  Aligned_cols=520  Identities=50%  Similarity=0.856  Sum_probs=492.5

Q ss_pred             HHHhccccccCCCccccCCCCCCCCCCCcceEEEEEEeeeCCccceeEEecccCcCCcccccccCcceEEEeecCCCCCC
Q 009071           17 SLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCC   96 (544)
Q Consensus        17 ~~~~~~~~~~~~~~~~~d~~~p~~p~c~~~f~lv~v~~~~~G~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~dgC   96 (544)
                      +++-.....+++|..|+++..|++|||+|+||++|+++|+||++..++.+..++||..++...+++...++..++|.|.|
T Consensus         8 ~l~g~~~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~c   87 (541)
T KOG2442|consen    8 LLLGLGSFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSC   87 (541)
T ss_pred             hhhhhhheEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCcccc
Confidence            33333566788999999999999999999999999999999999999999999999999988877777788889999999


Q ss_pred             CCCCCCCcceEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcccccccCCCCCCCCccceEEEechhhhHHHHHHHhc
Q 009071           97 SMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLN  176 (544)
Q Consensus        97 ~~~~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l~~M~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~  176 (544)
                      +++++.++|+++++.||+|+|++|+++||++||+|++|+||.+++..|.|++.++..+++||++||++++|+++.+....
T Consensus        88 s~~~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~  167 (541)
T KOG2442|consen   88 STLQSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS  167 (541)
T ss_pred             CCCCccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999988888999999999999999999999999


Q ss_pred             cceEEEEeecCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCccccccCCCCeeeeccccch
Q 009071          177 TSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAV  256 (544)
Q Consensus       177 G~~V~V~l~~p~~p~vD~s~~~L~l~Av~tV~~gs~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~  256 (544)
                      +++|++++|+|++|.+|++++++|+|||+||.+|+|||++++||+..|+++.++|..+++.+.+|++|++..++|+..|+
T Consensus       168 ~~~V~~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~  247 (541)
T KOG2442|consen  168 NDNVELALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAV  247 (541)
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEE
Confidence            99999999999999999999999999999999999999999999999999988887777778888889999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcCCceeeeccccccccchhhhhhhHHHhh
Q 009071          257 LFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFA  336 (544)
Q Consensus       257 ~f~v~as~~L~~ly~f~~~~~~~~l~~~f~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~  336 (544)
                      .|++++|.+|++||||++ |++++++++|||+|+.+|++|+.+++.|++.+..+.....|..|..++..+++.++|++++
T Consensus       248 ~fvv~~c~~LvLlyfF~~-~~V~v~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~a  326 (541)
T KOG2442|consen  248 FFVVTACGFLVLLYFFYS-YLVYVLIIIFCIGGAQGLYNCLAALVHRLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVA  326 (541)
T ss_pred             EehhhhHHHHHHHHHHHH-HHHHHHhhheeecccchHHHHHHHHHhhhhhhcccccccccccCChhHHHHHHHHhhhhee
Confidence            999999999999999996 5999999999999999999999999999987665566677888999999999999999999


Q ss_pred             hhhheeecCccchhHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHhhhheeeecccccc--ceeEEEecccCCCCCC
Q 009071          337 VVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARGDKSGED  414 (544)
Q Consensus       337 ~~w~~~~~~~~~W~~~nilgi~~~~~~i~~~~l~s~k~~~ilL~~lf~YDif~Vf~sp~~~~--~sVMv~VA~~~~~~~~  414 (544)
                      ++|+++||++|+|++||++|||+|++++|.+|+||+|++++||+++|+|||||||+||++|+  ||||++||+|.++++|
T Consensus       327 V~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~E  406 (541)
T KOG2442|consen  327 VVWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEE  406 (541)
T ss_pred             EEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998  9999999999999999


Q ss_pred             CCCEEEEecccc-----CCCCCeeeecCCCchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 009071          415 GIPMLLKIPRMF-----DPWGGYSIIGFGDILLPGLIIAFSLRYDWLANKSLQAGYFLWAMLAYGLGLLITYVALNLMDG  489 (544)
Q Consensus       415 ~~P~~l~~P~~~-----~~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~~~~~~YF~~~~igY~~GL~~t~~~~~~~~~  489 (544)
                      ++||++++||++     ++|++|||||||||++||++|+||+|||...++. ++.||.++++||++||++||+|+++| +
T Consensus       407 kiPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~-~~iYfv~~tvaYgiGLlvTfvaL~LM-~  484 (541)
T KOG2442|consen  407 KIPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSV-SNIYFVWSTVAYGIGLLVTFVALVLM-K  484 (541)
T ss_pred             CcceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhcccc-ceeEEehhHHHHHHHHHHHHHHHHHh-c
Confidence            999999999999     8899999999999999999999999999988875 68999999999999999999999999 6


Q ss_pred             CCcceecccchhhhHHHHHHHhhccchhhhccccCCCCCCCCCCcCCccc
Q 009071          490 HGQPALLYIVPFTLGTFLALGKKRGDLRVLWTRGEPERPCPHVHLQHSHE  539 (544)
Q Consensus       490 ~~QPALlYlvP~~l~~~~~~a~~rgel~~lw~~~~~~~~~~~~~~~~~~~  539 (544)
                      .|||||||||||||++.+++|++|||++++|+|..++..++|.+.++++.
T Consensus       485 ~GQPALLYLVP~TL~t~~~lal~R~El~~fWtg~~~~~~~~~~~~~p~~~  534 (541)
T KOG2442|consen  485 GGQPALLYLVPCTLGTAVVLALCRGELKKFWTGGSYQKMPAPNDLNPKPI  534 (541)
T ss_pred             CCCceEEEEechHHHHHHHHHHHHHHHHHHhccCCcccCCCCCcCCCCcC
Confidence            69999999999999999999999999999999999999888877777643

>KOG2443 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>smart00730 PSN Presenilin, signal peptide peptidase, family	Back alignment and domain information

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10	Back alignment and domain information

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like	Back alignment and domain information

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins	Back alignment and domain information

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)	Back alignment and domain information

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like	Back alignment and domain information

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)	Back alignment and domain information

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like	Back alignment and domain information

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	Back alignment and domain information

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1	Back alignment and domain information

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)	Back alignment and domain information

>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]	Back alignment and domain information

>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function	Back alignment and domain information

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)	Back alignment and domain information

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like	Back alignment and domain information

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []	Back alignment and domain information

>cd00538 PA PA: Protease-associated (PA) domain	Back alignment and domain information

>COG3389 Uncharacterized protein conserved in archaea [Function unknown]	Back alignment and domain information

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase	Back alignment and domain information

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2	Back alignment and domain information

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2	Back alignment and domain information

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases	Back alignment and domain information

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)	Back alignment and domain information

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3	Back alignment and domain information

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1	Back alignment and domain information

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like	Back alignment and domain information

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1	Back alignment and domain information

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)	Back alignment and domain information

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2	Back alignment and domain information

>KOG2736 consensus Presenilin [Signal transduction mechanisms]	Back alignment and domain information

>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		544
3icu_A		194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	1e-13
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	6e-04

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194	Back alignment and structure

 Score = 68.7 bits (167), Expect = 1e-13
 Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 13/139 (9%)

Query: 64  FVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCS----------MPKHKYAGDVIMVDRG 113
            +     +G     +      +        + C+                   + ++ RG
Sbjct: 54  ELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRG 113

Query: 114 N-CKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEK 172
             C F  K ++A   GAS  +I N      +++         + I A+M+    G  + +
Sbjct: 114 GGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG--AVDIVAIMIGNLKGTKILQ 171

Query: 173 MLLNTSSVSVQLYSPRRPV 191
            +     V++ +   ++  
Sbjct: 172 SIQRGIQVTMVIEVGKKHG 190

PyMOL of 3icu

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		544
4hyg_A		301	Putative uncharacterized protein; protease, membra	99.93
3icu_A		194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	99.86
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	99.01
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	98.86
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	98.46
3kas_A		640	Transferrin receptor protein 1; transferrin recept	98.37
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	98.25
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	98.0
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	97.89
2kr6_A		176	Presenilin-1; protease, alternative splicing, alzh	96.28
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	90.29

>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A	Back alignment and structure

Probab=99.93  E-value=1e-26  Score=231.42  Aligned_cols=175  Identities=25%  Similarity=0.307  Sum_probs=123.1

Q ss_pred             hhhhHHHhhhhhheeecCccchhHHHHHHHHHHHHHHHhccc--CchhHHHHHHHHHHHhhhheeeeccccccceeEEEe
Q 009071          328 VTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHI--PNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVV  405 (544)
Q Consensus       328 ~~~~~~~~~~~w~~~~~~~~~W~~~nilgi~~~~~~i~~~~l--~s~k~~~ilL~~lf~YDif~Vf~sp~~~~~sVMv~V  405 (544)
                      ..+.++++++.++.|.    +|+..|+.|++++..+...+.+  ..+ .+.+||+++++||++|||+|+      +|+++
T Consensus       107 a~~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtL  175 (301)
T 4hyg_A          107 TLIGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITL  175 (301)
T ss_dssp             HHHHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred             HHHHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHH
Confidence            3344666666665555    4999999999999998776555  666 899999999999999999776      99999


Q ss_pred             cccCCCCCCCCCEEEEeccccC-------------CCCCeeeecCCCchhhHHHHHHHHhhcccccc-cccchhHHHHHH
Q 009071          406 ARGDKSGEDGIPMLLKIPRMFD-------------PWGGYSIIGFGDILLPGLIIAFSLRYDWLANK-SLQAGYFLWAML  471 (544)
Q Consensus       406 A~~~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDIviPGl~ia~~~rfD~~~~~-~~~~~YF~~~~i  471 (544)
                      |+|..  +.++|+++++|+..+             .+++..++|+||+++|+++++.+.+||..... ...+.-++.+++
T Consensus       176 Aegvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lPalgA~~  253 (301)
T 4hyg_A          176 AEGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAPTLGAMV  253 (301)
T ss_dssp             TTTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCSCHHHHH
T ss_pred             HHhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccchHHHHHH
Confidence            99964  257999999998422             13668899999999999999999999975441 101123889999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCcceecccchhhhHHHHHHHhhccchh
Q 009071          472 AYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLALGKKRGDLR  517 (544)
Q Consensus       472 gY~~GL~~t~~~~~~~~~~~QPALlYlvP~~l~~~~~~a~~rgel~  517 (544)
                      ||.+||.+++..  ++.+++||+|.||.+.++++.++.++.+||++
T Consensus       254 Gt~~Gl~vLl~~--V~~grpqaGLP~LN~GaI~Gfllg~l~~G~~~  297 (301)
T 4hyg_A          254 GSLVGLAVLLYF--VNKGNPQAGLPPLNGGAILGFLVGAALAGSFS  297 (301)
T ss_dssp             HHHHHHHHHHHH--HTSSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHHH--HHcCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence            999999999663  23589999999999999999999999999987

PyMOL of 4hyg

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}	Back alignment and structure

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...	Back alignment and structure

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A	Back alignment and structure

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*	Back alignment and structure

>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}	Back alignment and structure

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		544
d1de4c2		193	Transferrin receptor ectodomain, apical domain {Hu	98.53
d3bi1a2		233	Glutamate carboxypeptidase II {Human (Homo sapiens	98.35

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=6.3e-08  Score=90.50  Aligned_cols=90  Identities=18%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             ceEEEeecCCCCCCCC-----CCCCCcceEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCcc------------cccc
Q 009071           83 NQIHLTLSHPRDCCSM-----PKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL------------YKMV  145 (544)
Q Consensus        83 ~~~~Lv~~~p~dgC~~-----~~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~N~~~~l------------~~M~  145 (544)
                      ++++++.++-   |..     +..+++|||+|++||+|+|.+|++|||++||.|+|||+|..+.            ..+.
T Consensus        39 v~g~lVy~n~---G~~~Df~~L~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~  115 (193)
T d1de4c2          39 VTGKLVHANF---GTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLG  115 (193)
T ss_dssp             EEECEEECST---TCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSS
T ss_pred             eeEEEEEccC---CCHHHHHHhccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccC
Confidence            5677776642   322     2247899999999999999999999999999999999974320            1111


Q ss_pred             cCCC----------------CCCCCccceEEEechhhhHHHHHHHh
Q 009071          146 CDPD----------------ETDLDIHIPAVMMPQDAGASLEKMLL  175 (544)
Q Consensus       146 ~~~~----------------~~~~~i~IPvv~Is~~~G~~L~~~L~  175 (544)
                      .+|.                +...-.+||+.-|+++|++.|++.|.
T Consensus       116 ~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         116 TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             SSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred             CCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence            1110                00112479999999999999999885

PyMOL of d1de4c2

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure