Citrus Sinensis ID: 009078

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEAPVVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAMANQQHAFMLQQQQQQQMMMMAPQQTANPFANPYAANVHPYGSGMPVQAYNPYTGLM
cccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccEEEcccccccccHHHHHHHHccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
ccccccHHHHHHHHHccccccEEEEEEEcccHHHHcEEEEEcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHEEEEEccccccccccccccccccccEEEEEEcccccccccHHccccccccHHHHcccHHHHHHHHHHcccccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATnhverpakEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRAlrevdptfHEEVINygrsrshmlnmahfkddsspnawdysAWVRSYALFLEERLECFRVLKydietdrprtkdldtaELLEHLPALQLLLFRVlgcqpqgaaVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSldigrgerfikieqppaSFLQAMEEYVkeaprgstfrkdqtvdnkvdapkeMMAIEykktpeveeakppsppppepvkveapvveppdllglddplpvaseldeKNALALAivpveqptsvaptqgngtaGWELALVtapssnenaTAASKLAGgldkltldslyddalrrnsqnasystwgpqpiagptmqpnghdpfyasgmvsaphSVQMAAMANQQHAFMLQQQQQQQMMMmapqqtanpfanpyaanvhpygsgmpvqaynpytglm
MSGGGTQKSFRKalgalkdtttvslakvnsdykeLDIAIVKatnhverpakekHIRAVFAsisatrpraDVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLkydietdrprtkdlDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKeaprgstfrkdqtvdnkvdapkeMMAIEYKktpeveeakppsppppepVKVEAPVVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRrnsqnasystwgpqPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAMANQQHAFMLQQQQQQQMMMMAPQQTANPFANPYAANVHPYGSGMPVQAYNPYTGLM
MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEllehlpalqlllFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKTpeveeakppsppppepvkveapvveppdllglddplpvASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAManqqhafmlqqqqqqqmmmmapqqtaNPFANPYAANVHPYGSGMPVQAYNPYTGLM
***************ALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQ****F***************************************************************************************ALALAIVPV*************TAGWELALV*********************LTLDSLY***********************************************************************************************************
************ALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKY****************LLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQ*************************************************************************************************************************************************************************************GMVS******************************************************************
*********FRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKT****************VKVEAPVVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAMANQQHA***************PQQTANPFANPYAANVHPYGSGMPVQAYNPYTGLM
********SFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAP*******************************************************PDLLGLDDPLPVASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATA****AGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAMANQQHAFMLQQQQQQQMMMMAPQQTANPFANPYAANVHPYGSGMPVQAYNPYTGLM
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MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEAPVVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSVQMAAMANQQHAFMLQQQQQQQMMMMAPQQTANPFANPYAANVHPYGSGMPVQAYNPYTGLM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query544 2.2.26 [Sep-21-2011]
Q9LHS0544 Putative clathrin assembl yes no 0.955 0.955 0.692 0.0
Q8LBH2571 Putative clathrin assembl no no 0.943 0.898 0.482 1e-139
Q9LVD8591 Putative clathrin assembl no no 0.856 0.788 0.513 1e-133
Q8VYT2601 Putative clathrin assembl no no 0.851 0.770 0.491 1e-133
P94017 692 Putative clathrin assembl no no 0.851 0.669 0.490 1e-130
Q9SA65599 Putative clathrin assembl no no 0.898 0.816 0.324 8e-62
Q8S9J8635 Probable clathrin assembl no no 0.955 0.818 0.302 1e-54
Q8GX47611 Putative clathrin assembl no no 0.900 0.801 0.296 7e-54
Q9ZVN6653 Clathrin coat assembly pr no no 0.533 0.444 0.328 6e-50
Q8LF20 653 Putative clathrin assembl no no 0.268 0.223 0.463 3e-34
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function desciption
 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/549 (69%), Positives = 427/549 (77%), Gaps = 29/549 (5%)

Query: 10  FRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRA 69
            R+ LGA+KDTTTVSLAKVNSDYKELDIAIVKATNHVERP+KE++IRA+F +ISATRPRA
Sbjct: 11  LRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIFMAISATRPRA 70

Query: 70  DVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHF 129
           DVAYCIHALA+RLS+THNWAVALKTLIVIHRALREVD TFHEEVINY RSRSHMLNM+HF
Sbjct: 71  DVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRSRSHMLNMSHF 130

Query: 130 KDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAELLEHLPALQL 189
           KDDS PNAW YSAWVR YALFLEERLECFRVLKYD+E D PRTKDLDT +LLE LPALQ 
Sbjct: 131 KDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPDLLEQLPALQE 190

Query: 190 LLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKA 249
           LLFRVL CQP+GAAV N +IQLALS+V SESTKIYQA++DG  NLVDKFF+MQR+DA+KA
Sbjct: 191 LLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQRNDAVKA 250

Query: 250 LDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFR 309
           LD+YRRA +QA RLSEF+EVCKS+++GRGERFIKIEQPP SFLQAMEEYVKEAP  +  +
Sbjct: 251 LDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYVKEAPLAAGVK 310

Query: 310 KDQTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEA--PVVEPPDLLGLDDP 367
           K+Q V+ K+ APKE++AIEY+  P+V E KP S   PEPVK EA  PV + PDLL +DDP
Sbjct: 311 KEQVVE-KLTAPKEILAIEYEIPPKVVEEKPAS---PEPVKAEAEKPVEKQPDLLSMDDP 366

Query: 368 LPVASELDEKNALALAIVP--VEQPTSVAP-TQGNGTAGWELALVTAPSSNENATAASKL 424
            P+ SEL+EKNALALAIVP  VEQP S    T GN T GWELALVTAPSSNE A A SKL
Sbjct: 367 APMVSELEEKNALALAIVPVSVEQPHSTTDFTNGNST-GWELALVTAPSSNEGAAADSKL 425

Query: 425 AGGLDKLTLDSLYDDALR-RNSQNASYSTWGPQPIAGPTMQPNGHDPFYASGMVSAPHSV 483
           AGGLDKLTLDSLY+DA+R    QN SY+ W   P+    M    H PFYAS  V+AP   
Sbjct: 426 AGGLDKLTLDSLYEDAIRVSQQQNRSYNPWEQNPVHNGHMM---HQPFYASNGVAAPQPF 482

Query: 484 QMAAMANQQHAFMLQQQQQQQMMM--------MAPQQTANPFANPYAANVHPYGSGMPVQ 535
           Q   MANQ H     Q Q   MMM           Q   NPF NP+ +N +P       Q
Sbjct: 483 Q---MANQNHQTFGYQHQNAGMMMGPVQQPYQQQQQNMNNPFGNPFVSNGNPQQP----Q 535

Query: 536 AYNPYTGLM 544
            YNPY   M
Sbjct: 536 GYNPYPRYM 544

Arabidopsis thaliana (taxid: 3702)
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function description
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function description
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1 Back     alignment and function description
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
359484228555 PREDICTED: putative clathrin assembly pr 1.0 0.980 0.798 0.0
356562967548 PREDICTED: putative clathrin assembly pr 0.985 0.978 0.801 0.0
357478253545 hypothetical protein MTR_4g115420 [Medic 0.992 0.990 0.812 0.0
356548512546 PREDICTED: putative clathrin assembly pr 0.981 0.978 0.790 0.0
255582313548 clathrin assembly protein, putative [Ric 0.996 0.989 0.843 0.0
449465625554 PREDICTED: putative clathrin assembly pr 0.998 0.980 0.810 0.0
297739011505 unnamed protein product [Vitis vinifera] 0.911 0.982 0.822 0.0
388505726548 unknown [Lotus japonicus] 0.990 0.983 0.761 0.0
147854711588 hypothetical protein VITISV_037564 [Viti 0.961 0.889 0.781 0.0
224087080548 predicted protein [Populus trichocarpa] 0.996 0.989 0.806 0.0
>gi|359484228|ref|XP_002285448.2| PREDICTED: putative clathrin assembly protein At5g35200 isoform 1 [Vitis vinifera] gi|359484230|ref|XP_003633084.1| PREDICTED: putative clathrin assembly protein At5g35200 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/555 (79%), Positives = 480/555 (86%), Gaps = 11/555 (1%)

Query: 1   MSGGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFA 60
           MSGGGTQKS RKALGA+KD+TTV LAKVNSDYKELDIAIVKATNHVERPAKEKHIRA+F+
Sbjct: 1   MSGGGTQKSLRKALGAIKDSTTVGLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAIFS 60

Query: 61  SISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSR 120
           +ISATRPRADVAYCIHALA+RLSKTHNWAVALKTL+VIHRALREVDPTFHEE+INYGRSR
Sbjct: 61  AISATRPRADVAYCIHALARRLSKTHNWAVALKTLVVIHRALREVDPTFHEELINYGRSR 120

Query: 121 SHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEL 180
           SHMLN+AHFKDDSSPNAWDYSAWVR+YALFLEERLECFRVLKYDIETDRPRTK+LDT EL
Sbjct: 121 SHMLNLAHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDIETDRPRTKELDTVEL 180

Query: 181 LEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFE 240
           LE LPALQ LLFRVLGCQP GAAVHN VIQLALS+VA ES KIY AISDGTVNLVDKFFE
Sbjct: 181 LEQLPALQQLLFRVLGCQPHGAAVHNIVIQLALSMVALESIKIYSAISDGTVNLVDKFFE 240

Query: 241 MQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVK 300
           MQR+DA+KAL+IYRRAG QAE+LSEFYE+CKSLDI RGERFIKIEQPPASFLQAMEEYV+
Sbjct: 241 MQRNDAVKALEIYRRAGSQAEKLSEFYEICKSLDIARGERFIKIEQPPASFLQAMEEYVR 300

Query: 301 EAPRGSTFRKD----QTVDNKVDAPKEMMAIEYKKTPEVEEAKPPSPPPPEPVKVEAPVV 356
           +APR ST RKD    Q V  K+ APK +++IEY K PEV+E  PPSPPPPEPVKVE PVV
Sbjct: 301 DAPRASTVRKDQETKQVVSEKLAAPKVVLSIEYNKAPEVQEEHPPSPPPPEPVKVEMPVV 360

Query: 357 EPPDLLGLDDPLPVASELDEKNALALAIVPV-EQPTSVAPTQGNGTAGWELALVTAPSSN 415
           EPPDLLGLDDP+P  +ELDEKNA+ALAIVPV E P S  P   NGT GWELALVTAPSSN
Sbjct: 361 EPPDLLGLDDPIPNTAELDEKNAMALAIVPVAETPPSAGPNPANGTTGWELALVTAPSSN 420

Query: 416 ENATAASKLAGGLDKLTLDSLYDDALRRNSQNASYSTWGPQPIAGPTMQPNGHDPFYASG 475
           ENATAASKLAGGLD LTLDSLYDDA+RRN+QN SY+ W P P+ GP MQ   HDPF+AS 
Sbjct: 421 ENATAASKLAGGLDMLTLDSLYDDAIRRNNQNVSYNPWQPVPMGGPMMQQTAHDPFFASN 480

Query: 476 MVSAPHSVQMAAMANQQHAFMLQQQQQQQMMMMAPQQTA------NPFANPYAANVHPYG 529
            V+AP +VQMAAM NQQ AFMLQQQQQQQ   M            NPF NPY A  HPYG
Sbjct: 481 AVAAPPNVQMAAMGNQQQAFMLQQQQQQQQQQMMMMMGQQQQQPLNPFGNPYGATAHPYG 540

Query: 530 SGMPVQAYNPYTGLM 544
           SGMPVQ +NPY+G +
Sbjct: 541 SGMPVQTHNPYSGFI 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356562967|ref|XP_003549739.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Glycine max] Back     alignment and taxonomy information
>gi|357478253|ref|XP_003609412.1| hypothetical protein MTR_4g115420 [Medicago truncatula] gi|355510467|gb|AES91609.1| hypothetical protein MTR_4g115420 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356548512|ref|XP_003542645.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Glycine max] Back     alignment and taxonomy information
>gi|255582313|ref|XP_002531947.1| clathrin assembly protein, putative [Ricinus communis] gi|223528393|gb|EEF30429.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449465625|ref|XP_004150528.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Cucumis sativus] gi|449526473|ref|XP_004170238.1| PREDICTED: putative clathrin assembly protein At5g35200-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297739011|emb|CBI28256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388505726|gb|AFK40929.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|147854711|emb|CAN83852.1| hypothetical protein VITISV_037564 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224087080|ref|XP_002308057.1| predicted protein [Populus trichocarpa] gi|222854033|gb|EEE91580.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
TAIR|locus:2182432544 AT5G35200 [Arabidopsis thalian 0.601 0.601 0.771 2.1e-169
TAIR|locus:2120780601 AT4G25940 [Arabidopsis thalian 0.299 0.271 0.707 1.5e-120
TAIR|locus:2165615591 AT5G57200 [Arabidopsis thalian 0.584 0.538 0.6 2.5e-119
TAIR|locus:2049587571 AT2G01600 [Arabidopsis thalian 0.549 0.523 0.602 1.4e-116
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.549 0.432 0.583 3.9e-110
TAIR|locus:2040115 653 AT2G25430 [Arabidopsis thalian 0.268 0.223 0.463 2.3e-60
TAIR|locus:2007524599 AT1G03050 [Arabidopsis thalian 0.279 0.253 0.490 3.3e-58
TAIR|locus:2132382611 AT4G02650 [Arabidopsis thalian 0.273 0.243 0.464 2e-55
TAIR|locus:505006543635 AT4G32285 [Arabidopsis thalian 0.268 0.229 0.429 1e-47
TAIR|locus:2205558 653 AT1G05020 [Arabidopsis thalian 0.303 0.252 0.382 3.3e-41
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1315 (468.0 bits), Expect = 2.1e-169, Sum P(2) = 2.1e-169
 Identities = 253/328 (77%), Positives = 288/328 (87%)

Query:     3 GGGTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASI 62
             GGG+Q S R+ LGA+KDTTTVSLAKVNSDYKELDIAIVKATNHVERP+KE++IRA+F +I
Sbjct:     4 GGGSQSSLRRYLGAIKDTTTVSLAKVNSDYKELDIAIVKATNHVERPSKERYIRAIFMAI 63

Query:    63 SATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSH 122
             SATRPRADVAYCIHALA+RLS+THNWAVALKTLIVIHRALREVD TFHEEVINY RSRSH
Sbjct:    64 SATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINYSRSRSH 123

Query:   123 MLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRPRTKDLDTAEXXX 182
             MLNM+HFKDDS PNAW YSAWVR YALFLEERLECFRVLKYD+E D PRTKDLDT +   
Sbjct:   124 MLNMSHFKDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLDTPDLLE 183

Query:   183 XXXXXXXXXFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQ 242
                      FRVL CQP+GAAV N +IQLALS+V SESTKIYQA++DG  NLVDKFF+MQ
Sbjct:   184 QLPALQELLFRVLDCQPEGAAVQNHIIQLALSMVISESTKIYQALTDGIDNLVDKFFDMQ 243

Query:   243 RHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEA 302
             R+DA+KALD+YRRA +QA RLSEF+EVCKS+++GRGERFIKIEQPP SFLQAMEEYVKEA
Sbjct:   244 RNDAVKALDMYRRAVKQAGRLSEFFEVCKSVNVGRGERFIKIEQPPTSFLQAMEEYVKEA 303

Query:   303 PRGSTFRKDQTVDNKVDAPKEMMAIEYK 330
             P  +  +K+Q V+ K+ APKE++AIEY+
Sbjct:   304 PLAAGVKKEQVVE-KLTAPKEILAIEYE 330
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005545 "1-phosphatidylinositol binding" evidence=IEA
GO:0030118 "clathrin coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=IEA
GO:0048268 "clathrin coat assembly" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007524 AT1G03050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205558 AT1G05020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LHS0CAP10_ARATHNo assigned EC number0.69210.95580.9558yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016968001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (551 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
pfam07651278 pfam07651, ANTH, ANTH domain 1e-104
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 1e-38
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 3e-34
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information 
 Score =  315 bits (808), Expect = e-104
 Identities = 115/282 (40%), Positives = 169/282 (59%), Gaps = 16/282 (5%)

Query: 32  YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVA 91
             +L++A+VKAT+H E P K+KH+R +   +  T   A VA    AL++RL  T NW VA
Sbjct: 1   DSDLEVAVVKATSHDEVPPKKKHVREI---LVGTSSPAKVAALFWALSRRLPLTRNWVVA 57

Query: 92  LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL 151
           LK LI++H+ LRE  P+  +E++   R  S +L ++ F DDS    WDY A++R+YA +L
Sbjct: 58  LKALILVHKLLREGHPSVLQELLRARRRISSLLRISSF-DDSMSLTWDYGAFIRAYAKYL 116

Query: 152 EERLECFRVLKYDIETDR-----------PRTK-DLDTAELLEHLPALQLLLFRVLGCQP 199
           +ERL+  R L  D   +R           P ++  +   +LL+ +P LQ LL  +L C+P
Sbjct: 117 DERLDFHRKLPRDPTFERVEYGSLRAVGDPNSRYTMSMEDLLDIIPKLQKLLDALLKCKP 176

Query: 200 QGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQ 259
            G A+ N  I  AL L+  ES  +Y AI++G +NL++KFFEM + DA  AL IY+R   Q
Sbjct: 177 TGNALTNECIIAALILLIKESFGLYGAINEGIINLLEKFFEMSKPDADAALGIYKRFVSQ 236

Query: 260 AERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301
            ERL EFYEVCK+L   R     K+   P + L A+EE++++
Sbjct: 237 FERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLDALEEHLRD 278

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 544
KOG0251491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.97
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.95
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.4
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.2
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 99.18
KOG2056336 consensus Equilibrative nucleoside transporter pro 98.76
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.17
KOG2057499 consensus Predicted equilibrative nucleoside trans 97.83
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.74
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 95.69
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.63
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 95.48
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 95.38
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 95.27
cd03561133 VHS VHS domain family; The VHS domain is present i 94.88
KOG2199462 consensus Signal transducing adaptor protein STAM/ 84.61
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-88  Score=729.81  Aligned_cols=446  Identities=39%  Similarity=0.631  Sum_probs=348.0

Q ss_pred             HHHhhhcccccchhhcccCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCCChHHH
Q 009078           12 KALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVA   91 (544)
Q Consensus        12 ka~GalKD~tsiglAkv~~~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~nWiVa   91 (544)
                      +++|++||++|+|+|+|.+.++++++||+|||+|+++|||+|||+.|+.+|+.++  +++.+|+++|++||++||||+||
T Consensus         1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA   78 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA   78 (491)
T ss_pred             CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence            4789999999999999998889999999999999999999999999999999875  89999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhhhcCCCccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhcccccccCCC-
Q 009078           92 LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP-  170 (544)
Q Consensus        92 lKtLillHrLLreG~p~f~eEll~~~~sr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~~~~d~e~~~~-  170 (544)
                      +|+||||||||++|+++|.++++.+    .++|+|++|+|++++.+|||++|||+|++||+||++||+.+++|++..+. 
T Consensus        79 lKsLIliH~ll~~G~~~f~~~l~~~----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~  154 (491)
T KOG0251|consen   79 LKALILIHRLLKEGDPSFEQELLSR----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG  154 (491)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhc----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence            9999999999999999999888543    36899999999999999999999999999999999999999999985532 


Q ss_pred             ----CCCCCC-hHHHHhhHHHHHHHHHHHHcCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 009078          171 ----RTKDLD-TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHD  245 (544)
Q Consensus       171 ----~~r~l~-~~~LL~~L~~LQ~LldrlL~c~p~g~a~~N~lvl~AL~llVkDS~~LY~~i~~giinLLe~fFeM~~~D  245 (544)
                          ..+++. .+.+|+.+++||.||+++|+|+|.+.+++|.+|++||.+||+|||+||++||+||++|||+||+|+++|
T Consensus       155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~  234 (491)
T KOG0251|consen  155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD  234 (491)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence                445666 789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHhCCCCCCCC-CCcccCC---CCCCc
Q 009078          246 ALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFR-KDQTVDN---KVDAP  321 (544)
Q Consensus       246 a~kaleIYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEEylrda~~~~~~~-~~~~~~~---~~~~~  321 (544)
                      |+++|+|||||.+|+++|.+||++||++|+.|+++||+|+++|.++|++|||||++.+..+... .......   +....
T Consensus       235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (491)
T KOG0251|consen  235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKVSPVSQFSTDFESS  314 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccccCCccccccchhcc
Confidence            9999999999999999999999999999999999999999999999999999999976332221 0000000   00000


Q ss_pred             cc------c-c--c-ccCCCCCCccCCCCCCCCCCCCCCCCCC--CCCCCCcCCCCCCCCccchhhhhcccccccccCCC
Q 009078          322 KE------M-M--A-IEYKKTPEVEEAKPPSPPPPEPVKVEAP--VVEPPDLLGLDDPLPVASELDEKNALALAIVPVEQ  389 (544)
Q Consensus       322 ~~------~-~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dll~l~~~~~~~~~~~~~~~lala~~~~~~  389 (544)
                      +.      . +  . ++..+.+.+..+.  .+.+.++++.+.+  .+.++|++.+.+..+..++.+..|+||||+ .+ .
T Consensus       315 e~~~~~~~~~e~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~  390 (491)
T KOG0251|consen  315 ESSSRLEEPEEQKEVIEELQEPLEQEED--QPSPNSENPEANDQAGIATDDLLLQPDNLPMFSASTAPNALALAL-PF-P  390 (491)
T ss_pred             ccccccccchhhhhcccccccccccccc--CCCCCCCCccccccccccCcchhhcccCCCccccccCcchhhcCC-CC-C
Confidence            00      0 0  0 1222211111110  1111111111111  123345666666677899999999999998 32 1


Q ss_pred             CCCCCCCCCCCCCccceeeccCCCCCchhhhhhhhcCCcchhhhhhhhhHHHHHhhcc---CCCCCC--CCCCCCCCCCC
Q 009078          390 PTSVAPTQGNGTAGWELALVTAPSSNENATAASKLAGGLDKLTLDSLYDDALRRNSQN---ASYSTW--GPQPIAGPTMQ  464 (544)
Q Consensus       390 ~~~~~~~~~~~~~~wElalv~~~s~~~~~~~~~~l~gg~d~l~Ld~~y~~~~~~~~~~---~~~g~~--~~~p~~~~~~~  464 (544)
                              ....++||+++|+..++.....+..++||||   +||||| ++.+|+.+.   +++|++  ...|. ..+.-
T Consensus       391 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~  457 (491)
T KOG0251|consen  391 --------NHTGSGWGLPAATPDSAAWETATMQALAGGL---TLNSMV-NNPFRATVQTAPQGQGSQPFGAQPM-PAMAA  457 (491)
T ss_pred             --------CCCCCccccccCCcchhhhhhcccccccccc---eecccc-CCchhhhccccccccCCCccccCCc-hhhhc
Confidence                    3456788888888666533221112899999   999999 777776542   234532  11221 11111


Q ss_pred             CCCCCccccccCCCCC
Q 009078          465 PNGHDPFYASGMVSAP  480 (544)
Q Consensus       465 ~~~~dpfaaS~~v~pp  480 (544)
                      ..+.+||..|..+++|
T Consensus       458 ~~~~~~~~~~~~~a~~  473 (491)
T KOG0251|consen  458 LPQPYPVGQPPFPAQL  473 (491)
T ss_pred             ccccCCCCCCCCcCcc
Confidence            2233777777777776

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 8e-22
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 9e-22
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 3e-19
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 4e-19
1hx8_A299 Crystal Structure Of N-Terminal Domain Of Drosophil 2e-17
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 131/267 (49%), Gaps = 14/267 (5%)
Query: 38  AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIV 97
            + KAT H     K+KH+  +           ++     +L +R + + +W V  K+LI 
Sbjct: 32  TVCKATTHEIMGPKKKHLDYLIQC--TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 98  IHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLEC 157
            H  +       +E  I Y  SR+ + N+++F D S    +D S ++R Y+ +L E+   
Sbjct: 89  THHLM----VYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVS 144
Query: 158 FRVLKYDIETDRPRTKD-----LDTAEXXXXXXXXXXXXFRVLGCQPQGAAVHNFVIQLA 212
           +R + +D  T   R  D     ++T +              +L        + N VI  A
Sbjct: 145 YRQVAFDF-TKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAA 203
Query: 213 LSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKS 272
             L+  ++ +++ A ++G +NL++K+F+M+++   + LDIY++   +  R+SEF +V + 
Sbjct: 204 FMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQ 263
Query: 273 LDIGRGERFIKIEQPPASFLQAMEEYV 299
           + I RG+    + Q P+S L A+E+++
Sbjct: 264 VGIDRGD-IPDLSQAPSSLLDALEQHL 289
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180 Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 2e-89
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 3e-85
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 4e-84
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 5e-05
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  275 bits (704), Expect = 2e-89
 Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 15/280 (5%)

Query: 5   GTQKSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISA 64
           G+      +  +L D  T +   V      +   + KAT H     K+KH+  +   I  
Sbjct: 1   GSPIGIHMSGQSLTDRITAAQHSVT--GSAVSKTVCKATTHEIMGPKKKHLDYL---IQC 55

Query: 65  T-RPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHM 123
           T     ++     +L +R + + +W V  K+LI  H  +   +  F    I Y  SR+ +
Sbjct: 56  TNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHHLMVYGNERF----IQYLASRNTL 110

Query: 124 LNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP----RTKDLDTAE 179
            N+++F D S    +D S ++R Y+ +L E+   +R + +D    +       + ++T +
Sbjct: 111 FNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTEK 170

Query: 180 LLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFF 239
           LL+ +P +Q  +  +L        + N VI  A  L+  ++ +++ A ++G +NL++K+F
Sbjct: 171 LLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYF 230

Query: 240 EMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGE 279
           +M+++   + LDIY++   +  R+SEF +V + + I RG+
Sbjct: 231 DMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGD 270
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.55
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.55
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.3
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.3
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.54
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 96.05
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 95.9
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 95.67
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 95.66
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 95.52
3g2s_A149 C-terminal fragment of sortilin-related receptor; 95.52
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 95.43
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 95.15
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 94.66
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=6.8e-73  Score=579.61  Aligned_cols=276  Identities=24%  Similarity=0.437  Sum_probs=243.6

Q ss_pred             hHHHHHHhhhc-ccccchhhcccCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHhcCCCCCcHHHHHHHHHHhhccCC
Q 009078            8 KSFRKALGALK-DTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTH   86 (544)
Q Consensus         8 ~~~rka~GalK-D~tsiglAkv~~~~~dLdvAIvKATshde~PPKeKHVr~Il~~T~~~~p~~~v~~~v~~L~rRL~kT~   86 (544)
                      ++||+++|++| |+|+          .++++||+|||+|+++|||+||||+||.+|+.++  +++++|+++|.+|+ +++
T Consensus         6 ~~~~~~~~a~k~~~~~----------~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R~-~~~   72 (299)
T 1hx8_A            6 QTINDRLLAARHSLAG----------QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIERS-QNA   72 (299)
T ss_dssp             --------------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHH-TCS
T ss_pred             HHHHHHHHHHhhccch----------hHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhhc-cCC
Confidence            69999999999 9988          4566899999999999999999999999999875  78899999999995 899


Q ss_pred             ChHHHHHHHHHHHHHHhhCCcccHHHHHHhhhcCCCccccccccCCCC-----------CCCCcccHHHHHHHHHHHHHH
Q 009078           87 NWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSS-----------PNAWDYSAWVRSYALFLEERL  155 (544)
Q Consensus        87 nWiValKtLillHrLLreG~p~f~eEll~~~~sr~~iL~Ls~F~D~ss-----------~~s~d~safVR~Ya~YLdeRL  155 (544)
                      ||+|+||+|||+|||||||||.|++++.    +++++|+|++|+|+++           +.+||||.|||+|++||++|+
T Consensus        73 ~w~va~K~LivlH~llreG~~~~~~~l~----~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~  148 (299)
T 1hx8_A           73 NWVVVYKSLITTHHLMAYGNERFMQYLA----SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKS  148 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCHHHHHHHH----HTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCCHHHHHHHH----hCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999877663    3567999999999865           356899999999999999999


Q ss_pred             HHhhhcccccccC-----CCCCCCCChHHHHhhHHHHHHHHHHHHcCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 009078          156 ECFRVLKYDIETD-----RPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDG  230 (544)
Q Consensus       156 ~~~r~~~~d~e~~-----~~~~r~l~~~~LL~~L~~LQ~LldrlL~c~p~g~a~~N~lvl~AL~llVkDS~~LY~~i~~g  230 (544)
                      .+|+..++|++..     ..++++|++++||++++.||+|||++++|+|.+.+.+|+|+++||++||+||++||+++|+|
T Consensus       149 ~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~g  228 (299)
T 1hx8_A          149 LSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDG  228 (299)
T ss_dssp             HHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998642     23789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHh
Q 009078          231 TVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE  301 (544)
Q Consensus       231 iinLLe~fFeM~~~Da~kaleIYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEEylrd  301 (544)
                      |+||||+||+|++.||++||+||+||.+|+++|++||++||++++.+ ++||+|+++|++|+++|||||++
T Consensus       229 i~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~  298 (299)
T 1hx8_A          229 IINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  298 (299)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999977 89999999999999999999986
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 544
d1hx8a1133 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop 3e-55
d1hf8a1132 a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye 3e-55
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 7e-41
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 8e-41
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 9e-22
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  180 bits (458), Expect = 3e-55
 Identities = 36/130 (27%), Positives = 76/130 (58%), Gaps = 1/130 (0%)

Query: 170 PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISD 229
              + ++  +LL+ LP LQ  L  +L    Q   + N VI ++  L+  +  +++   +D
Sbjct: 2   GSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYND 61

Query: 230 GTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPA 289
           G +NL++K+F+M +  A  ALD+Y++   + +R+ EF +V +++ I +G+    + + P+
Sbjct: 62  GIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGD-IPDLTKAPS 120

Query: 290 SFLQAMEEYV 299
           S L A+E+++
Sbjct: 121 SLLDALEQHL 130
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.97
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.97
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.84
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 95.76
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.68
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 95.51
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 94.87
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 94.33
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=4.8e-39  Score=290.73  Aligned_cols=130  Identities=27%  Similarity=0.520  Sum_probs=127.5

Q ss_pred             CCCCCChHHHHhhHHHHHHHHHHHHcCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009078          171 RTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKAL  250 (544)
Q Consensus       171 ~~r~l~~~~LL~~L~~LQ~LldrlL~c~p~g~a~~N~lvl~AL~llVkDS~~LY~~i~~giinLLe~fFeM~~~Da~kal  250 (544)
                      .+|+|++++||++++++|+||||+++|+|.+++++|+|+++||++||+||++||+.+|+|||||||+||+|+++||++||
T Consensus         3 ~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al   82 (133)
T d1hx8a1           3 SLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDAL   82 (133)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCccccCCCCCChhhHHHHHHHHHh
Q 009078          251 DIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE  301 (544)
Q Consensus       251 eIYkRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEEylrd  301 (544)
                      +||+||.+|+++|.+||+|||++|++| .+||+|+++|++++++|||||++
T Consensus        83 ~iyk~~~~q~e~L~~f~~~ck~~g~~r-~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          83 DLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999987 69999999999999999999985
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure